Query 014536
Match_columns 423
No_of_seqs 19 out of 21
Neff 1.8
Searched_HMMs 29240
Date Mon Mar 25 13:21:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014536.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014536hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ghg_A Fibrinogen alpha chain; 89.5 0.79 2.7E-05 47.3 7.7 13 319-331 174-186 (562)
2 3dtp_E RLC, myosin regulatory 86.6 0.67 2.3E-05 37.4 4.2 43 223-266 44-86 (196)
3 1t3j_A Mitofusin 1; coiled coi 85.0 1.1 3.8E-05 37.1 4.8 36 297-332 36-75 (96)
4 2k21_A Potassium voltage-gated 78.4 1.5 5.2E-05 38.5 3.5 32 3-37 49-80 (138)
5 3trt_A Vimentin; cytoskeleton, 78.1 8.1 0.00028 28.8 7.0 21 230-251 7-27 (77)
6 1deq_A Fibrinogen (alpha chain 76.2 21 0.00071 35.7 11.1 58 257-322 102-159 (390)
7 3bbp_D GRIP and coiled-coil do 54.1 5.8 0.0002 31.7 1.9 49 270-319 17-65 (71)
8 3p8c_D Wiskott-aldrich syndrom 53.4 5.8 0.0002 37.7 2.1 15 176-190 166-180 (279)
9 1m1j_A Fibrinogen alpha subuni 49.7 1E+02 0.0036 31.6 10.5 59 256-322 99-157 (491)
10 1quu_A Human skeletal muscle a 45.3 1.4E+02 0.0048 25.3 10.4 98 233-330 94-195 (250)
11 1xaw_A Occludin; coiled-coil, 43.9 43 0.0015 29.2 6.0 38 261-299 53-90 (140)
12 2i3s_B Checkpoint serine/threo 40.7 10 0.00034 26.8 1.2 14 364-377 17-30 (36)
13 2i3t_B Spindle assembly checkp 39.9 12 0.0004 28.7 1.5 13 364-376 24-36 (54)
14 3gp4_A Transcriptional regulat 39.4 1.6E+02 0.0054 24.2 9.1 66 245-325 51-116 (142)
15 2a26_A Calcyclin-binding prote 37.9 31 0.0011 25.3 3.5 31 287-317 16-47 (50)
16 3ljc_A ATP-dependent protease 35.6 1.8E+02 0.0062 25.3 8.7 62 231-292 134-209 (252)
17 2ctr_A DNAJ homolog subfamily 33.2 59 0.002 24.3 4.6 24 232-255 18-41 (88)
18 2cug_A Mkiaa0962 protein; DNAJ 31.9 67 0.0023 24.0 4.7 31 224-254 19-50 (88)
19 2f95_B Sensory rhodopsin II tr 31.0 36 0.0012 25.8 3.0 25 22-46 72-96 (163)
20 2oxo_A Integrase; DNA-binding 30.9 1.2E+02 0.0041 20.3 5.8 57 233-294 22-81 (103)
21 2yua_A Williams-beuren syndrom 28.0 69 0.0024 24.5 4.2 34 221-254 16-50 (99)
22 1sjj_A Actinin; 3-helix bundle 27.8 3.6E+02 0.012 26.9 10.3 95 236-330 453-551 (863)
23 2ys8_A RAB-related GTP-binding 25.7 70 0.0024 24.2 3.8 43 232-274 38-80 (90)
24 3lys_A Prophage PI2 protein 01 25.1 1.4E+02 0.0048 21.6 5.3 58 232-294 26-86 (112)
25 4dac_A Computationally designe 25.1 42 0.0014 22.7 2.1 16 305-320 2-17 (28)
26 1q90_L Cytochrome B6F complex 25.1 57 0.002 22.5 2.9 26 10-35 1-30 (32)
27 3gee_A MNME, tRNA modification 24.9 1.7E+02 0.006 28.2 7.3 83 248-331 132-235 (476)
28 2ctp_A DNAJ homolog subfamily 24.2 1E+02 0.0035 22.3 4.4 23 232-254 18-40 (78)
29 2zt9_E Cytochrome B6-F complex 24.1 67 0.0023 22.2 3.0 26 10-35 1-29 (31)
30 2kj8_A Putative prophage CPS-5 24.0 1E+02 0.0036 22.4 4.4 40 250-294 46-85 (118)
31 3va9_A Sensor histidine kinase 23.8 2.9E+02 0.0099 22.3 9.3 81 234-316 56-139 (164)
32 2i0m_A Phosphate transport sys 23.5 3E+02 0.01 22.5 8.0 59 261-323 4-62 (216)
33 2kj5_A Phage integrase; GFT PS 23.2 76 0.0026 22.7 3.4 39 251-294 48-86 (116)
34 3ghg_A Fibrinogen alpha chain; 23.1 1.8E+02 0.0062 30.4 7.3 47 275-322 110-156 (562)
35 3fx7_A Putative uncharacterize 22.8 3.2E+02 0.011 22.4 8.3 74 254-331 6-80 (94)
36 3ra3_B P2F; coiled coil domain 22.2 58 0.002 22.0 2.4 18 300-317 10-27 (28)
37 3c7l_A Regulator of G-protein 21.5 1.6E+02 0.0055 23.2 5.4 72 233-339 65-136 (137)
38 2dlv_A RGS18, regulator of G-p 20.6 3E+02 0.01 21.4 6.8 74 233-341 62-135 (140)
No 1
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=89.49 E-value=0.79 Score=47.34 Aligned_cols=13 Identities=38% Similarity=0.353 Sum_probs=9.2
Q ss_pred hHHHHHHHHHHhc
Q 014536 319 DVYVYNWLQDQLR 331 (423)
Q Consensus 319 Da~VYN~LQqQLK 331 (423)
|..-|+.+|.||.
T Consensus 174 d~~sY~~~QKQLe 186 (562)
T 3ghg_A 174 DLKDYEDQQKQLE 186 (562)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHH
Confidence 3345999998874
No 2
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=86.58 E-value=0.67 Score=37.43 Aligned_cols=43 Identities=7% Similarity=0.079 Sum_probs=30.5
Q ss_pred CCCcccccchhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhH
Q 014536 223 CLCPLTSMGSATQRKIKELYHQLVQSCESNELTLAQVGEFTKCL 266 (423)
Q Consensus 223 c~yPfTSs~sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcL 266 (423)
..-.+..++....++|.+.|+.+ -.+....+|..++..++..|
T Consensus 44 ~~~~~~~ls~~~~~~l~~~F~~~-D~d~~G~i~~~el~~~l~~l 86 (196)
T 3dtp_E 44 GSNVFAMFTQHQVQEFKEAFQLI-DQDKDGFISKNDIRATFDSL 86 (196)
T ss_dssp CCCSSCSSCTTTHHHHHHHHHHH-CCSCSSBCCHHHHHHHHHTT
T ss_pred chhhhhhCCHHHHHHHHHHHHHH-CCCCCCcCCHHHHHHHHHHh
Confidence 33444555666677888888754 56778899999988877654
No 3
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=84.96 E-value=1.1 Score=37.09 Aligned_cols=36 Identities=28% Similarity=0.406 Sum_probs=31.7
Q ss_pred chHHHHHHHHHH----HHHHHHhhhhhHHHHHHHHHHhcc
Q 014536 297 SSIDRLRQQIYN----LEKQQRRLEEDVYVYNWLQDQLRL 332 (423)
Q Consensus 297 SS~DRL~qQIyk----LE~EqkRLekDa~VYN~LQqQLKl 332 (423)
+-|.|||+||+. ||.|.++|+++...+..+|..+|.
T Consensus 36 ~tfarLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~ 75 (96)
T 1t3j_A 36 TTFARLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKL 75 (96)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 579999999975 788999999999999999988774
No 4
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=78.42 E-value=1.5 Score=38.54 Aligned_cols=32 Identities=38% Similarity=0.736 Sum_probs=26.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 014536 3 ENNLMLFMLLVISFFFLTIFFTVTLFLTYKKIKRL 37 (423)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (423)
.++-.|++|+|++|| -||++.+.|.|-+-||+
T Consensus 49 ~~~~ylYIL~vmgff---gff~~GImLsYiRSKk~ 80 (138)
T 2k21_A 49 GKLEALYVLMVLGFF---GFFTLGIMLSYIRSKKL 80 (138)
T ss_dssp CSSTTCHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred CCceeehHHHHHHHH---HHHHHHHHHHHhHhhhc
Confidence 445678888888887 47889999999999987
No 5
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=78.12 E-value=8.1 Score=28.83 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.1
Q ss_pred cchhHHHHHHHHHHHHHhhhcc
Q 014536 230 MGSATQRKIKELYHQLVQSCES 251 (423)
Q Consensus 230 s~sAtQRRIkeqYDELvran~a 251 (423)
+++++ +.|..+|++++..|+.
T Consensus 7 L~~il-~eiRaQYE~ia~knr~ 27 (77)
T 3trt_A 7 CTAAM-RDVRQQYESVAAKNLQ 27 (77)
T ss_dssp CHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHHHHHHhHH
Confidence 34566 8999999999998864
No 6
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=76.23 E-value=21 Score=35.70 Aligned_cols=58 Identities=24% Similarity=0.370 Sum_probs=33.8
Q ss_pred HHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 014536 257 AQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (423)
Q Consensus 257 aQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~V 322 (423)
+|+.+.-|-.-+.=.+|.++.+.|||++.-. -. ...+|+..|..+-.+.+|||.|+++
T Consensus 102 ~q~~dndn~~~e~s~eLe~~i~~lk~~V~~q------~~--~ir~Lq~~l~~q~~kiqRLE~~Id~ 159 (390)
T 1deq_A 102 AKANNNDNTFKQINEDLRSRIEILRRKVIEQ------VQ--RINLLQKNVRDQLVDMKRLEVDIDI 159 (390)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHHHHHHH------hH--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444445555555555554322 12 6667788888888888888877643
No 7
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=54.08 E-value=5.8 Score=31.73 Aligned_cols=49 Identities=29% Similarity=0.365 Sum_probs=31.8
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhh
Q 014536 270 REELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEED 319 (423)
Q Consensus 270 RnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekD 319 (423)
..+|.++-++++++..=..+||.-+. +.-.||-+|+.-|..|..||+.+
T Consensus 17 ~eel~~~L~~~~k~~~Hl~~LL~EsE-atnarL~eq~~lLK~EIRRlERn 65 (71)
T 3bbp_D 17 KEELVQKLSSTTKSADHLNGLLRETE-ATNAILMEQIKLLKSEIRRLERN 65 (71)
T ss_dssp ------------CTTSHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999999999999997643 45679999999999999999875
No 8
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=53.37 E-value=5.8 Score=37.67 Aligned_cols=15 Identities=40% Similarity=0.751 Sum_probs=6.9
Q ss_pred hhHHHHHHHHHhhhh
Q 014536 176 LEEEEEERVKKKKKK 190 (423)
Q Consensus 176 ~~~~eeqr~K~kkkr 190 (423)
|.+-|+.+.+|||+|
T Consensus 166 l~d~k~~~k~krk~~ 180 (279)
T 3p8c_D 166 LQDTEDKRKEKRKQK 180 (279)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcc
Confidence 444445554444444
No 9
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=49.73 E-value=1e+02 Score=31.62 Aligned_cols=59 Identities=22% Similarity=0.343 Sum_probs=36.5
Q ss_pred HHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 014536 256 LAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (423)
Q Consensus 256 LaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~V 322 (423)
++|+.+.-|-.-+.=.+|..+.+.|+|+..-. . ....=|+..|..+-.+.+|||.|+++
T Consensus 99 ~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~q------i--~~IrvLq~~l~~q~skIQRLE~dI~~ 157 (491)
T 1m1j_A 99 LEGAQQLDENYGHVSTELRRRIVTLKQRVATQ------V--NRIKALQNSIQEQVVEMKRLEVDIDI 157 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhccchhHHHHHHHHHHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555556666666666654322 1 34445667778888888888888875
No 10
>1quu_A Human skeletal muscle alpha-actinin 2; triple-helix coiled coil, contractIle protein; 2.50A {Homo sapiens} SCOP: a.7.1.1 a.7.1.1
Probab=45.25 E-value=1.4e+02 Score=25.27 Aligned_cols=98 Identities=10% Similarity=0.081 Sum_probs=73.0
Q ss_pred hHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCC----cchHHHHHHHHHH
Q 014536 233 ATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKAD----RSSIDRLRQQIYN 308 (423)
Q Consensus 233 AtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAd----RSS~DRL~qQIyk 308 (423)
.-...|.++|+.|......++-.|.+...+...+-++|.....+.+.+.--+.=+...|...+ -.+...|.++...
T Consensus 94 ~r~~~l~~~W~~L~~~~~~R~~~L~~~l~~~~~~d~l~~qF~~~a~~~~~Wl~~~e~~l~~~~~~~d~e~v~~ll~~h~~ 173 (250)
T 1quu_A 94 DRCQKICDQWDRLGTLTQKRREALERMEKLLETIDQLHLEFAKRAAPFNNWMEGAMEDLQDMFIVHSIEEIQSLITAHEQ 173 (250)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCCCSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHH
Confidence 346678999999999999999999998888877777887888888888777777777777654 3456666666666
Q ss_pred HHHHHHhhhhhHHHHHHHHHHh
Q 014536 309 LEKQQRRLEEDVYVYNWLQDQL 330 (423)
Q Consensus 309 LE~EqkRLekDa~VYN~LQqQL 330 (423)
++.+...++........|.+++
T Consensus 174 ~~~~l~~~~~~~~~i~~l~~~~ 195 (250)
T 1quu_A 174 FKATLPEADGERQSIMAIQNEV 195 (250)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665666554
No 11
>1xaw_A Occludin; coiled-coil, cell adhesion; 1.45A {Homo sapiens} SCOP: h.4.17.1 PDB: 1wpa_A 3g7c_A
Probab=43.92 E-value=43 Score=29.18 Aligned_cols=38 Identities=18% Similarity=0.230 Sum_probs=29.4
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchH
Q 014536 261 EFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSI 299 (423)
Q Consensus 261 eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~ 299 (423)
+|-..+-+-| +|+.+-+.|.++|+-..++|...++.|-
T Consensus 53 ~F~~dy~EYk-~Lhaev~~v~~~F~~Ld~~L~~l~~~s~ 90 (140)
T 1xaw_A 53 NFDTGLQEYK-SLQSVLDEINKELSRLDKELDDYREESE 90 (140)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHSCTTSH
T ss_pred HHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3444444443 6899999999999999999999887664
No 12
>2i3s_B Checkpoint serine/threonine-protein kinase; WD40 protein, beta-propeller, glebs motif, mitotic spindle checkpoint, cell cycle; 1.90A {Saccharomyces cerevisiae}
Probab=40.71 E-value=10 Score=26.84 Aligned_cols=14 Identities=36% Similarity=0.330 Sum_probs=11.2
Q ss_pred cccCCHHHHHhhhc
Q 014536 364 FADISFEELLAQEK 377 (423)
Q Consensus 364 ~adiSFEELLAQEK 377 (423)
-.|+|||||||--+
T Consensus 17 ~~E~s~eEllA~sR 30 (36)
T 2i3s_B 17 DEEFNTEEILAMIK 30 (36)
T ss_dssp SCCCCHHHHHHHHT
T ss_pred CcEecHHHHHHHhh
Confidence 46899999999543
No 13
>2i3t_B Spindle assembly checkpoint component; WD40 protein, beta propeller, mitotic spindle checkpoint, cell cycle; 2.80A {Saccharomyces cerevisiae}
Probab=39.85 E-value=12 Score=28.72 Aligned_cols=13 Identities=38% Similarity=0.442 Sum_probs=10.3
Q ss_pred cccCCHHHHHhhh
Q 014536 364 FADISFEELLAQE 376 (423)
Q Consensus 364 ~adiSFEELLAQE 376 (423)
-.|+|||||||--
T Consensus 24 ~~E~sfeEllA~s 36 (54)
T 2i3t_B 24 RLEFSLEEVLAIS 36 (54)
T ss_dssp -CBCCHHHHHHHT
T ss_pred cceeeHHHHHHHh
Confidence 4589999999963
No 14
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=39.38 E-value=1.6e+02 Score=24.17 Aligned_cols=66 Identities=14% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHHH
Q 014536 245 LVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVYN 324 (423)
Q Consensus 245 Lvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~VYN 324 (423)
++++-..-+++|+++.+++..+-+.. .+ ..-...+|. .-.+.|.++|..|+...+.|+.-...|.
T Consensus 51 ~I~~lr~~G~sL~eIk~~l~~~~~~~-------~~----~~~~~~~L~----~~~~~l~~~i~~L~~~~~~L~~~i~~~~ 115 (142)
T 3gp4_A 51 FTRQMRRAGLSIEALIDYLALFREGE-------HT----LEARAELLK----KQRIELKNRIDVMQEALDRLDFKIDNYD 115 (142)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHCG-------GG----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhccC-------CC----HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555677999999999987642211 11 111223332 2345667777777777777776666554
Q ss_pred H
Q 014536 325 W 325 (423)
Q Consensus 325 ~ 325 (423)
.
T Consensus 116 ~ 116 (142)
T 3gp4_A 116 T 116 (142)
T ss_dssp H
T ss_pred H
Confidence 4
No 15
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=37.91 E-value=31 Score=25.34 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=25.9
Q ss_pred HHHHhhcCCcchHH-HHHHHHHHHHHHHHhhh
Q 014536 287 QKALLSKADRSSID-RLRQQIYNLEKQQRRLE 317 (423)
Q Consensus 287 ~KALLskAdRSS~D-RL~qQIykLE~EqkRLe 317 (423)
.++||+.|-|+++. =|-.+|.+||.+.+.++
T Consensus 16 l~~Ll~~AkR~rVk~~L~~ei~~lE~ei~~~~ 47 (50)
T 2a26_A 16 VKVLLEKATRKRVRDALTAEKSKIETEIKNKM 47 (50)
T ss_dssp HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHhh
Confidence 57899999999887 56689999999988653
No 16
>3ljc_A ATP-dependent protease LA; LON N-domain, allosteric enzyme, ATP-binding, DNA-binding, H nucleotide-binding, serine protease, stress respo; 2.60A {Escherichia coli}
Probab=35.63 E-value=1.8e+02 Score=25.31 Aligned_cols=62 Identities=8% Similarity=0.026 Sum_probs=38.3
Q ss_pred chhHHHHHHHHHHHHHhhhccCc----------chHHHHHHHHHhH----HHHHHHHhhhhhhhhhHHHHHHHHhh
Q 014536 231 GSATQRKIKELYHQLVQSCESNE----------LTLAQVGEFTKCL----AQAREELEDKSETIKRKFSIQKALLS 292 (423)
Q Consensus 231 ~sAtQRRIkeqYDELvran~aK~----------LTLaQV~eF~NcL----VdARnEL~~KSE~iqRkftI~KALLs 292 (423)
..|+-|.+++.+.+++..+..-. -+...+..|+-.. ++.|.+|++-.+...|--.+...|-.
T Consensus 134 ~~al~~~l~~~~~~~~~l~~~~~~e~~~~~~~~~dp~~Lad~ia~~l~l~~~eKQ~LLe~~d~~~Rl~~l~~lL~~ 209 (252)
T 3ljc_A 134 QEVLVRTAISQFEGYIKLNKKIPPEVLTSLNSIDDPARLADTIAAHMPLKLADKQSVLEMSDVNERLEYLMAMMES 209 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCHHHHHHTTSCCCHHHHHHHHHHTSCCCHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHccCCHHHHHHHHHHhCCCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56788999999999887654211 1122333333222 34677888877777777666665543
No 17
>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.17 E-value=59 Score=24.32 Aligned_cols=24 Identities=29% Similarity=0.526 Sum_probs=20.0
Q ss_pred hhHHHHHHHHHHHHHhhhccCcch
Q 014536 232 SATQRKIKELYHQLVQSCESNELT 255 (423)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~LT 255 (423)
.|++..|+.+|.+|++...--+..
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~~ 41 (88)
T 2ctr_A 18 SASERQIKKAFHKLAMKYHPDKNK 41 (88)
T ss_dssp TCCHHHHHHHHHHHHHHTCTTTCC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCC
Confidence 588999999999999998755543
No 18
>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}
Probab=31.91 E-value=67 Score=24.03 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCccccc-chhHHHHHHHHHHHHHhhhccCcc
Q 014536 224 LCPLTSM-GSATQRKIKELYHQLVQSCESNEL 254 (423)
Q Consensus 224 ~yPfTSs-~sAtQRRIkeqYDELvran~aK~L 254 (423)
.|=+.-+ -.|++..|+.+|..|++...--+.
T Consensus 19 ~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (88)
T 2cug_A 19 PYRVLGVSRTASQADIKKAYKKLAREWHPDKN 50 (88)
T ss_dssp HHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred HHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 4444333 468999999999999998775443
No 19
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=31.01 E-value=36 Score=25.84 Aligned_cols=25 Identities=20% Similarity=0.018 Sum_probs=1.9
Q ss_pred HHHHHHHHhHHHHHHHHHHhhhhhh
Q 014536 22 FFTVTLFLTYKKIKRLQELENYANV 46 (423)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~ 46 (423)
.+.+.+++...-.+.+++|.+.++-
T Consensus 72 ~~~~~~~~~~~i~~pl~~l~~~~~~ 96 (163)
T 2f95_B 72 LGLVAATLGGDTAASLSTLAAKASR 96 (163)
T ss_dssp HHHHC--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444445667776655543
No 20
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=30.85 E-value=1.2e+02 Score=20.25 Aligned_cols=57 Identities=11% Similarity=0.059 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHHHhhh---ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 014536 233 ATQRKIKELYHQLVQSC---ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (423)
Q Consensus 233 AtQRRIkeqYDELvran---~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskA 294 (423)
.+.+.....+..+...- .-..+|..+|.+|.+.|.+. ....++++.+++.++++..|
T Consensus 22 ~T~~~y~~~~~~~~~~~g~~~l~~it~~~i~~~~~~l~~~-----~~~~t~~~~~~~l~~~~~~a 81 (103)
T 2oxo_A 22 KTLINYMSKIKAIRRGLPDAPLEDITTKEIAAMLNGYIDE-----GKAASAKLIRSTLSDAFREA 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHSCSCBGGGCCHHHHHHHHHHHHHT-----TCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHCcCchhhCCHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHH
Confidence 34444444444443322 23468889999998887532 25678889999998888764
No 21
>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.03 E-value=69 Score=24.53 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=25.2
Q ss_pred CCCCCccccc-chhHHHHHHHHHHHHHhhhccCcc
Q 014536 221 LGCLCPLTSM-GSATQRKIKELYHQLVQSCESNEL 254 (423)
Q Consensus 221 ~~c~yPfTSs-~sAtQRRIkeqYDELvran~aK~L 254 (423)
....|-++-+ -.|++..|+.+|..|++...--+.
T Consensus 16 ~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~ 50 (99)
T 2yua_A 16 RTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRN 50 (99)
T ss_dssp SSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTC
T ss_pred ccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCC
Confidence 3455655554 468999999999999988775444
No 22
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1
Probab=27.85 E-value=3.6e+02 Score=26.88 Aligned_cols=95 Identities=9% Similarity=0.077 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCC----cchHHHHHHHHHHHHH
Q 014536 236 RKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKAD----RSSIDRLRQQIYNLEK 311 (423)
Q Consensus 236 RRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAd----RSS~DRL~qQIykLE~ 311 (423)
..|.++++.|......++-.|.+-.++...+-+.+.+..++.+.+.--+.-+...|+..+ -.+.+.|-+....++.
T Consensus 453 ~~l~~~W~~L~~~~~~R~~~L~~~l~~~q~~~~l~~~f~~~a~~~~~Wl~~~e~~l~~~~~g~dl~~ve~ll~kh~~~~~ 532 (863)
T 1sjj_A 453 QKICDQWDNLGALTQKRREALERTEKLLETIDQLYLEYAKRAAPFNNWMEGAMEDLQDTFIVHTIEEIQGLTTAHEQFKA 532 (863)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHCCCCCSSSGGGHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHhhccHHHHHHHHHHHHHHHh
Confidence 345556666666666666666555555544444444444444444444444555555543 2344444444444444
Q ss_pred HHHhhhhhHHHHHHHHHHh
Q 014536 312 QQRRLEEDVYVYNWLQDQL 330 (423)
Q Consensus 312 EqkRLekDa~VYN~LQqQL 330 (423)
+....+..+.-.+.|.++|
T Consensus 533 ~l~~~~~~~~~~~~l~~~l 551 (863)
T 1sjj_A 533 TLPDADKERQAILGIHNEV 551 (863)
T ss_dssp THHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444444444444454444
No 23
>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.68 E-value=70 Score=24.25 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHh
Q 014536 232 SATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELE 274 (423)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~ 274 (423)
.|++..|+.+|..|++...--+..-....+-...+.+|..-|.
T Consensus 38 ~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~ 80 (90)
T 2ys8_A 38 GASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALL 80 (90)
T ss_dssp TCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHC
Confidence 6788999999999999887555421112222234445554443
No 24
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=25.15 E-value=1.4e+02 Score=21.61 Aligned_cols=58 Identities=12% Similarity=0.033 Sum_probs=37.4
Q ss_pred hhHHHHHHHHHHHHHhhh---ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 014536 232 SATQRKIKELYHQLVQSC---ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (423)
Q Consensus 232 sAtQRRIkeqYDELvran---~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskA 294 (423)
..|.+.....+..+...- .-..+|..+|.+|.+.|.+. ....+++|.+++.++++..|
T Consensus 26 ~~T~~~y~~~~~~i~p~~g~~~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~i~~~A 86 (112)
T 3lys_A 26 EMTYKGYEQTLKYLKTYMPNVLISEITASSYQRALNKFAET-----HAKASTKGFHTRVRASIQCL 86 (112)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCBTTTCCHHHHHHHHHHHHTT-----SCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCHHhCCHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHH
Confidence 344444444444443332 34678999999999887421 24577888888888887654
No 25
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=25.11 E-value=42 Score=22.66 Aligned_cols=16 Identities=38% Similarity=0.858 Sum_probs=11.3
Q ss_pred HHHHHHHHHHhhhhhH
Q 014536 305 QIYNLEKQQRRLEEDV 320 (423)
Q Consensus 305 QIykLE~EqkRLekDa 320 (423)
.+|||....|||+|.+
T Consensus 2 evykldanvkrlekev 17 (28)
T 4dac_A 2 EVYKLDANVKRLEKEV 17 (28)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred ceeeccccHHHHHHHH
Confidence 3677777777777765
No 26
>1q90_L Cytochrome B6F complex subunit PETL; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.24.1
Probab=25.10 E-value=57 Score=22.52 Aligned_cols=26 Identities=35% Similarity=0.595 Sum_probs=15.1
Q ss_pred HHHHHHHHH-HH--HHHHHHHHHhHHH-HH
Q 014536 10 MLLVISFFF-LT--IFFTVTLFLTYKK-IK 35 (423)
Q Consensus 10 ~~~~~~~~~-~~--~~~~~~~~~~~~~-~~ 35 (423)
|+.+||+|- |. ..+|..+|+...| ||
T Consensus 1 M~tiisYf~fL~~al~~t~~lfiGL~K~Ik 30 (32)
T 1q90_L 1 MLTITSYVGLLIGALVFTLGIYLGLLKVVK 30 (32)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 455666553 33 3455667777766 65
No 27
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=24.92 E-value=1.7e+02 Score=28.25 Aligned_cols=83 Identities=18% Similarity=0.186 Sum_probs=52.3
Q ss_pred hhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhH-------HHHHHHHhhc----------C----CcchHHHHHHHH
Q 014536 248 SCESNELTLAQVGEFTKCLAQAREELEDKSETIKRK-------FSIQKALLSK----------A----DRSSIDRLRQQI 306 (423)
Q Consensus 248 an~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRk-------ftI~KALLsk----------A----dRSS~DRL~qQI 306 (423)
+--+.+++|.|+.. +.-||+|+++.+.+...-+-+ -.+++.|+.- + +-..-+++.++|
T Consensus 132 Aflngk~dL~qaEa-v~dli~a~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iea~iDf~eedi~~~~~~~l~~~i 210 (476)
T 3gee_A 132 AFLNGRIDLLQAEA-IGEMIHARTESAYRTAVSQMKGDLSVRLGGLREQLIRSCALIELELDFSEEDVEFQSRDELTMQI 210 (476)
T ss_dssp HHHTTSSCHHHHHH-HHHHHHCCSHHHHHHHHHHHHTHHHHHHHHHHTHHHHHHHTTTTCSSCCSSCCSSSCHHHHHHHH
T ss_pred hhccCcCcHHHHHH-HHHHHhCCCHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHhheecCCCcccccchhHHHHHHHH
Confidence 34456889999755 456888887776665543322 2344444431 1 123455788999
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHhc
Q 014536 307 YNLEKQQRRLEEDVYVYNWLQDQLR 331 (423)
Q Consensus 307 ykLE~EqkRLekDa~VYN~LQqQLK 331 (423)
.+++.+.+++.+....-..+.+.++
T Consensus 211 ~~l~~~l~~~~~~~~~~~~~r~~~k 235 (476)
T 3gee_A 211 ETLRSEVNRLIDSYQHGRIVSEGVS 235 (476)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHhhHhhcCCCE
Confidence 9999998888887766666655543
No 28
>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.22 E-value=1e+02 Score=22.26 Aligned_cols=23 Identities=17% Similarity=0.364 Sum_probs=19.2
Q ss_pred hhHHHHHHHHHHHHHhhhccCcc
Q 014536 232 SATQRKIKELYHQLVQSCESNEL 254 (423)
Q Consensus 232 sAtQRRIkeqYDELvran~aK~L 254 (423)
.|.+..|+.+|..|++...--+.
T Consensus 18 ~as~~eIk~ayr~l~~~~HPDk~ 40 (78)
T 2ctp_A 18 GASDEDLKKAYRRLALKFHPDKN 40 (78)
T ss_dssp TCCHHHHHHHHHHHHTTSCTTTC
T ss_pred CCCHHHHHHHHHHHHHHHCcCCC
Confidence 57899999999999998875444
No 29
>2zt9_E Cytochrome B6-F complex subunit 6; photosynthesis, heme B,2Fe-2S protei cytochrome F; HET: HEM UMQ CLA OPC SQD BCR; 3.00A {Nostoc SP}
Probab=24.05 E-value=67 Score=22.16 Aligned_cols=26 Identities=15% Similarity=0.322 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHH-HH--HHHHHhHHHHH
Q 014536 10 MLLVISFFFLTIF-FT--VTLFLTYKKIK 35 (423)
Q Consensus 10 ~~~~~~~~~~~~~-~~--~~~~~~~~~~~ 35 (423)
|..+|+++.+..+ |. +.||+..|.||
T Consensus 1 m~~~i~y~~~l~~~~~iA~GL~fGLrsiK 29 (31)
T 2zt9_E 1 MLAIVAYIGFLALFTGIAAGLLFGLRSAK 29 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4556666544443 33 45677767665
No 30
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=24.05 E-value=1e+02 Score=22.42 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=30.0
Q ss_pred ccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 014536 250 ESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (423)
Q Consensus 250 ~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskA 294 (423)
.-..+|..+|.+|.+.|.+. ....+++|.+++.++++.-|
T Consensus 46 ~l~~It~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~A 85 (118)
T 2kj8_A 46 EIQDIEPMQLLEVIRRFEDR-----GAMERANKARRRCGEVFRYA 85 (118)
T ss_dssp BTTSCCHHHHHHHHHHHHTT-----TCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHH
Confidence 35678999999998877532 14578889888888887664
No 31
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase family 9, phosphotransfer, transferase two-component system; 2.30A {Rhodopseudomonas palustris}
Probab=23.84 E-value=2.9e+02 Score=22.35 Aligned_cols=81 Identities=12% Similarity=0.176 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHH--H-hhcCCcchHHHHHHHHHHHH
Q 014536 234 TQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKA--L-LSKADRSSIDRLRQQIYNLE 310 (423)
Q Consensus 234 tQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KA--L-LskAdRSS~DRL~qQIykLE 310 (423)
-+..|...+++|-+.....+--.+.+.+ +.-+|+.+-+...+.-.++|. ....| + .....+..+|+++.++..+.
T Consensus 56 a~~~~~~~l~~L~~l~~dnp~Q~~~l~~-l~~~~~~~~~~~~~~i~l~~~-~~~~a~~~~~~~~Gk~~md~iR~~~~~~~ 133 (164)
T 3va9_A 56 ARDALAARLDGLRAVLADNPEQIAHIDE-LRLLTDMRMAQLGRVVELGPE-RMREALDILEQARVDRLTERIETSLSVLT 133 (164)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHGGGCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 3466777888877665444322222222 344566665555544334444 33322 2 24466889999999999998
Q ss_pred HHHHhh
Q 014536 311 KQQRRL 316 (423)
Q Consensus 311 ~EqkRL 316 (423)
.++.+|
T Consensus 134 ~~E~~l 139 (164)
T 3va9_A 134 RAEQAL 139 (164)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877665
No 32
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=23.55 E-value=3e+02 Score=22.49 Aligned_cols=59 Identities=12% Similarity=0.130 Sum_probs=42.6
Q ss_pred HHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHH
Q 014536 261 EFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVY 323 (423)
Q Consensus 261 eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~VY 323 (423)
.|-.-|..++.++.+-++.+...+.-.-..|.+.|. .+.++|.+.|.+..+|+.+..-|
T Consensus 4 ~~~~~l~~l~~~l~~M~~~v~~~l~~a~~al~~~d~----~~a~~v~~~d~~iD~l~~~I~~~ 62 (216)
T 2i0m_A 4 QFDLELHELEQSFLGLGQLVLETASKALLALASKDK----EMAELIINKDHAINQGQSAIELT 62 (216)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCH----HHHHHHHHhHHHHHHHHHHHHHH
Confidence 466778888888888888888887776666665553 46667777777777777766544
No 33
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=23.16 E-value=76 Score=22.66 Aligned_cols=39 Identities=8% Similarity=0.170 Sum_probs=26.9
Q ss_pred cCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcC
Q 014536 251 SNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKA 294 (423)
Q Consensus 251 aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskA 294 (423)
-..+|..+|.+|.+.|.+. ....+++|.+++.++++.-|
T Consensus 48 l~~it~~~i~~~~~~l~~~-----~s~~t~~~~~~~l~~~~~~A 86 (116)
T 2kj5_A 48 VEDVKPRHIDDVLKAVMKR-----GAPSIANDTLRWLKRMFNYA 86 (116)
T ss_dssp SSSCCHHHHHHHHHHHHHH-----TCHHHHHHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHHHHHc-----cChHHHHHHHHHHHHHHHHH
Confidence 4567888888888877542 15567788888777776543
No 34
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=23.13 E-value=1.8e+02 Score=30.37 Aligned_cols=47 Identities=19% Similarity=0.280 Sum_probs=27.0
Q ss_pred hhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHH
Q 014536 275 DKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYV 322 (423)
Q Consensus 275 ~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~V 322 (423)
|=++.++|++...|.=+.+.- +.+.=|+..|..+-.+.+|||.|++|
T Consensus 110 E~S~ELRRrIqyLKekVdnQl-snIrvLQsnLedq~~kIQRLEvDIdi 156 (562)
T 3ghg_A 110 RVSEDLRSRIEVLKRKVIEKV-QHIQLLQKNVRAQLVDMKRLEVDIDI 156 (562)
T ss_dssp HTTHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444443333222 34455667777777788888888876
No 35
>3fx7_A Putative uncharacterized protein; double helix, unknown function; 1.65A {Helicobacter pylori} SCOP: a.25.5.1 PDB: 2gts_A
Probab=22.81 E-value=3.2e+02 Score=22.43 Aligned_cols=74 Identities=20% Similarity=0.394 Sum_probs=54.8
Q ss_pred chHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHhhhhhHHHH-HHHHHHhc
Q 014536 254 LTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQQRRLEEDVYVY-NWLQDQLR 331 (423)
Q Consensus 254 LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~EqkRLekDa~VY-N~LQqQLK 331 (423)
.+..+|.+|++-|-.-++.|++.-..+.-.|.= | +.=.=.-+++.-++..+|....++..+++.=| .||.++++
T Consensus 6 ~dpeElr~Fa~~L~~F~d~Lq~~~~~L~~~f~~---L-~sWqDqkr~kFee~fe~l~s~l~~f~e~a~e~vp~L~~~i~ 80 (94)
T 3fx7_A 6 MDTEEVREFVGHLERFKELLREEVNSLSNHFHN---L-ESWRDARRDKFSEVLDNLKSTFNEFDEAAQEQIAWLKERIR 80 (94)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---C-CSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---c-chHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHHHHHHH
Confidence 357899999999999999999999888877753 3 31111345555677777778888888888766 47777775
No 36
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.16 E-value=58 Score=21.96 Aligned_cols=18 Identities=44% Similarity=0.532 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhh
Q 014536 300 DRLRQQIYNLEKQQRRLE 317 (423)
Q Consensus 300 DRL~qQIykLE~EqkRLe 317 (423)
.||.|.|..||-|...|+
T Consensus 10 arlkqeiaaleyeiaale 27 (28)
T 3ra3_B 10 ARLKQEIAALEYEIAALE 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHhc
Confidence 488899999998887775
No 37
>3c7l_A Regulator of G-protein signaling 16; RGS, RGS16, GAP, GTPase activating protein, heterotrimeric G-protein, lipoprotein, palmitate, phosphoprotein; 1.89A {Mus musculus} PDB: 3c7k_B* 2ik8_B*
Probab=21.50 E-value=1.6e+02 Score=23.20 Aligned_cols=72 Identities=21% Similarity=0.391 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Q 014536 233 ATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQ 312 (423)
Q Consensus 233 AtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~E 312 (423)
.++.+.+.-|++-+.......+.|.. ..|.++.+. |..++..-||....+|+.+
T Consensus 65 ~~~~~a~~Iy~~yi~~~s~~evNi~~---------~~r~~i~~~--------------l~~~~~~~Fd~aq~~V~~~--- 118 (137)
T 3c7l_A 65 KLASRAHHIFDEYIRSEAPKEVNIDH---------ETRELTKTN--------------LQAATTSCFDVAQGKTRTL--- 118 (137)
T ss_dssp HHHHHHHHHHHHHTSTTCTTCCCCCH---------HHHHHHHHH--------------HHTTCTTTTHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCCCCccCCCCH---------HHHHHHHHH--------------HHcCCHHHHHHHHHHHHHH---
Confidence 45667788888888766555555542 122222211 1246788999999998876
Q ss_pred HHhhhhhHHHHHHHHHHhccCHHHHHH
Q 014536 313 QRRLEEDVYVYNWLQDQLRLSPACKKM 339 (423)
Q Consensus 313 qkRLekDa~VYN~LQqQLKlSpAYKkM 339 (423)
|+.|.+ .+..-|+.|+.+
T Consensus 119 ---m~~d~~------~rFl~S~~y~~~ 136 (137)
T 3c7l_A 119 ---MEKDSY------PRFLKSPAYRDL 136 (137)
T ss_dssp ---HHTTHH------HHHHTSHHHHTT
T ss_pred ---HHHChh------HhhCcCHHHHHh
Confidence 455532 356678888765
No 38
>2dlv_A RGS18, regulator of G-protein signaling 18; RGS domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.56 E-value=3e+02 Score=21.35 Aligned_cols=74 Identities=20% Similarity=0.417 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHHHhhhccCcchHHHHHHHHHhHHHHHHHHhhhhhhhhhHHHHHHHHhhcCCcchHHHHHHHHHHHHHH
Q 014536 233 ATQRKIKELYHQLVQSCESNELTLAQVGEFTKCLAQAREELEDKSETIKRKFSIQKALLSKADRSSIDRLRQQIYNLEKQ 312 (423)
Q Consensus 233 AtQRRIkeqYDELvran~aK~LTLaQV~eF~NcLVdARnEL~~KSE~iqRkftI~KALLskAdRSS~DRL~qQIykLE~E 312 (423)
.++.+.+.-|++-+.......+.|.. ..|+++.+. |..++..-||....+|+.+
T Consensus 62 ~~~~~a~~Iy~~yi~~~s~~evni~~---------~~r~~i~~~--------------l~~p~~~~F~~aq~~V~~~--- 115 (140)
T 2dlv_A 62 QIHLKAKAIYEKFIQTDAPKEVNLDF---------HTKEVITNS--------------ITQPTLHSFDAAQSRVYQL--- 115 (140)
T ss_dssp HHHHHHHHHHHHTTSSSSTTCCCCCH---------HHHHHHHHG--------------GGSCCTTTTHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHCCCCCccccCCcH---------HHHHHHHHH--------------hcCCCHHHHHHHHHHHHHH---
Confidence 35566667777766655444444432 122222211 2356788999999888876
Q ss_pred HHhhhhhHHHHHHHHHHhccCHHHHHHHH
Q 014536 313 QRRLEEDVYVYNWLQDQLRLSPACKKMFE 341 (423)
Q Consensus 313 qkRLekDa~VYN~LQqQLKlSpAYKkMlE 341 (423)
|+.|. | .+..-|+.|+.++.
T Consensus 116 ---m~~d~--~----~rFl~S~~y~~~l~ 135 (140)
T 2dlv_A 116 ---MEQDS--Y----TRFLKSDIYLDLMS 135 (140)
T ss_dssp ---HHHTH--H----HHHHTSHHHHHHHC
T ss_pred ---HhhCc--c----hhhccCHHHHHHHH
Confidence 44553 2 45667999998875
Done!