Query 014537
Match_columns 423
No_of_seqs 210 out of 1761
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 06:07:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014537.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014537hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03146 aspartyl protease fam 100.0 1.1E-73 2.4E-78 567.6 44.6 405 14-423 10-431 (431)
2 PTZ00165 aspartyl protease; Pr 100.0 9.2E-59 2E-63 462.8 36.4 306 79-422 109-450 (482)
3 cd05478 pepsin_A Pepsin A, asp 100.0 3.7E-56 8.1E-61 428.3 31.0 296 84-417 4-317 (317)
4 cd05490 Cathepsin_D2 Cathepsin 100.0 8.2E-56 1.8E-60 427.6 31.6 296 86-417 2-325 (325)
5 cd06096 Plasmepsin_5 Plasmepsi 100.0 1.2E-55 2.5E-60 426.1 31.6 297 89-421 2-326 (326)
6 cd05486 Cathespin_E Cathepsin 100.0 9.1E-56 2E-60 425.4 29.0 289 91-417 1-316 (316)
7 KOG1339 Aspartyl protease [Pos 100.0 6.3E-55 1.4E-59 431.1 35.5 332 83-421 39-397 (398)
8 cd06098 phytepsin Phytepsin, a 100.0 1.1E-54 2.3E-59 417.8 31.4 286 83-417 3-317 (317)
9 cd05477 gastricsin Gastricsins 100.0 1.5E-54 3.3E-59 417.4 31.7 293 88-418 1-318 (318)
10 cd05472 cnd41_like Chloroplast 100.0 4.1E-54 8.9E-59 411.0 33.0 282 90-420 1-299 (299)
11 cd05487 renin_like Renin stimu 100.0 2.5E-54 5.5E-59 417.0 31.1 295 85-418 3-326 (326)
12 cd05488 Proteinase_A_fungi Fun 100.0 3.4E-54 7.3E-59 415.1 31.7 295 84-417 4-320 (320)
13 cd05485 Cathepsin_D_like Cathe 100.0 4.2E-54 9E-59 415.7 31.4 299 82-417 3-329 (329)
14 PTZ00147 plasmepsin-1; Provisi 100.0 1.3E-53 2.9E-58 422.7 34.7 298 81-419 130-450 (453)
15 PTZ00013 plasmepsin 4 (PM4); P 100.0 7.8E-53 1.7E-57 416.3 34.4 301 79-419 127-449 (450)
16 cd05489 xylanase_inhibitor_I_l 100.0 3.3E-51 7.2E-56 398.1 32.2 306 97-418 2-361 (362)
17 cd05473 beta_secretase_like Be 100.0 2.4E-51 5.3E-56 402.0 30.9 303 89-423 2-350 (364)
18 cd05475 nucellin_like Nucellin 100.0 5.6E-51 1.2E-55 383.8 29.4 257 89-420 1-273 (273)
19 cd06097 Aspergillopepsin_like 100.0 2.6E-49 5.5E-54 373.9 26.1 263 91-417 1-278 (278)
20 cd05476 pepsin_A_like_plant Ch 100.0 9.8E-49 2.1E-53 367.3 28.8 244 90-420 1-265 (265)
21 PF00026 Asp: Eukaryotic aspar 100.0 2.6E-49 5.6E-54 381.3 21.6 292 90-418 1-317 (317)
22 cd05474 SAP_like SAPs, pepsin- 100.0 6.1E-47 1.3E-51 361.1 27.8 262 90-418 2-295 (295)
23 cd05471 pepsin_like Pepsin-lik 100.0 2.4E-44 5.2E-49 340.9 28.7 262 91-417 1-283 (283)
24 PF14543 TAXi_N: Xylanase inhi 100.0 4.3E-30 9.3E-35 222.4 15.0 157 91-259 1-164 (164)
25 PF14541 TAXi_C: Xylanase inhi 99.9 4.9E-24 1.1E-28 184.4 14.5 139 279-417 1-161 (161)
26 cd05470 pepsin_retropepsin_lik 99.9 6.6E-24 1.4E-28 171.5 12.6 106 93-224 1-109 (109)
27 cd05483 retropepsin_like_bacte 98.2 4.9E-06 1.1E-10 64.8 7.3 93 90-226 2-94 (96)
28 TIGR02281 clan_AA_DTGA clan AA 97.1 0.0028 6E-08 51.7 7.7 96 87-226 8-103 (121)
29 PF13650 Asp_protease_2: Aspar 96.9 0.0056 1.2E-07 46.6 8.2 89 93-225 1-89 (90)
30 cd05479 RP_DDI RP_DDI; retrope 95.9 0.027 5.8E-07 46.1 6.6 100 287-415 21-124 (124)
31 cd05479 RP_DDI RP_DDI; retrope 95.5 0.11 2.3E-06 42.6 8.8 92 88-226 14-107 (124)
32 PF11925 DUF3443: Protein of u 95.2 0.31 6.7E-06 46.7 11.9 106 90-227 23-149 (370)
33 PF08284 RVP_2: Retroviral asp 93.3 0.13 2.9E-06 42.7 4.5 97 298-418 32-132 (135)
34 cd05484 retropepsin_like_LTR_2 92.6 0.14 3.1E-06 39.2 3.5 30 91-122 1-30 (91)
35 cd06095 RP_RTVL_H_like Retrope 90.9 1.2 2.7E-05 33.6 7.0 28 94-123 2-29 (86)
36 COG3577 Predicted aspartyl pro 90.3 0.53 1.1E-05 41.3 4.9 81 85-204 100-180 (215)
37 PF13975 gag-asp_proteas: gag- 89.2 0.7 1.5E-05 33.7 4.2 35 87-123 5-39 (72)
38 cd05484 retropepsin_like_LTR_2 86.6 9.1 0.0002 29.0 9.3 30 286-320 4-33 (91)
39 TIGR03698 clan_AA_DTGF clan AA 85.0 7.1 0.00015 30.8 8.1 24 390-413 84-107 (107)
40 PF00077 RVP: Retroviral aspar 84.8 1.4 3E-05 34.2 3.9 30 91-122 6-35 (100)
41 PF02160 Peptidase_A3: Caulifl 82.7 2.1 4.7E-05 37.8 4.6 97 298-417 20-117 (201)
42 TIGR02281 clan_AA_DTGA clan AA 81.1 3.5 7.7E-05 33.4 5.1 37 276-320 8-44 (121)
43 cd05482 HIV_retropepsin_like R 77.8 3 6.5E-05 31.7 3.4 26 94-121 2-27 (87)
44 PF13650 Asp_protease_2: Aspar 77.0 3.4 7.3E-05 30.9 3.6 29 287-320 3-31 (90)
45 PF09668 Asp_protease: Asparty 72.3 20 0.00044 29.2 7.1 30 286-320 28-57 (124)
46 PF13975 gag-asp_proteas: gag- 70.4 9.2 0.0002 27.7 4.4 29 287-320 13-41 (72)
47 cd05483 retropepsin_like_bacte 70.3 8 0.00017 29.1 4.3 30 286-320 6-35 (96)
48 cd06095 RP_RTVL_H_like Retrope 64.9 8.5 0.00018 28.9 3.3 29 287-320 3-31 (86)
49 PF12384 Peptidase_A2B: Ty3 tr 61.0 25 0.00053 30.0 5.6 25 296-320 43-67 (177)
50 PF12384 Peptidase_A2B: Ty3 tr 56.4 15 0.00033 31.2 3.6 30 91-120 33-62 (177)
51 PF00077 RVP: Retroviral aspar 54.7 11 0.00023 29.0 2.4 26 286-316 9-34 (100)
52 cd06094 RP_Saci_like RP_Saci_l 51.7 84 0.0018 23.9 6.6 22 296-317 7-28 (89)
53 PF09668 Asp_protease: Asparty 44.5 39 0.00084 27.5 4.2 31 88-120 22-52 (124)
54 cd05481 retropepsin_like_LTR_1 44.2 25 0.00055 26.9 2.9 23 298-320 10-32 (93)
55 PF08194 DIM: DIM protein; In 39.8 30 0.00064 21.4 2.1 16 1-17 1-16 (36)
56 COG5550 Predicted aspartyl pro 39.6 21 0.00046 28.8 1.9 21 300-320 28-49 (125)
57 PF05984 Cytomega_UL20A: Cytom 36.5 43 0.00093 24.8 2.9 8 89-96 67-74 (100)
58 KOG0012 DNA damage inducible p 34.7 2.8E+02 0.0061 27.0 8.7 39 380-418 307-346 (380)
59 COG3577 Predicted aspartyl pro 32.7 63 0.0014 28.7 3.9 37 276-320 102-138 (215)
60 TIGR03698 clan_AA_DTGF clan AA 32.1 59 0.0013 25.5 3.4 24 93-116 2-29 (107)
61 cd01206 Homer Homer type EVH1 31.6 1.1E+02 0.0024 24.2 4.7 40 186-230 54-94 (111)
62 PF13752 DUF4165: Domain of un 22.1 1.9E+02 0.0042 23.4 4.6 50 254-306 73-122 (124)
63 PF08284 RVP_2: Retroviral asp 21.7 1.3E+02 0.0028 24.8 3.7 30 89-120 20-49 (135)
64 PTZ00165 aspartyl protease; Pr 21.1 99 0.0021 31.6 3.5 42 270-317 110-152 (482)
65 cd06098 phytepsin Phytepsin, a 21.0 76 0.0017 30.2 2.6 35 276-316 7-41 (317)
66 cd05475 nucellin_like Nucellin 20.4 1.1E+02 0.0024 28.3 3.5 32 89-120 157-194 (273)
No 1
>PLN03146 aspartyl protease family protein; Provisional
Probab=100.00 E-value=1.1e-73 Score=567.55 Aligned_cols=405 Identities=61% Similarity=1.033 Sum_probs=340.8
Q ss_pred HHHhhccccccCCCceEEEEeccCCCCCCCCCCCCChhHHHHHHHhhhHhhhcccccccccCCCCCccceeecCCccEEE
Q 014537 14 LCFYVVSPIEAQTGGFSVELIHRDSPKSPFYNSSETPYQRLRDALTRSLNRLNHFNQNSSISSSKASQADIIPNNANYLI 93 (423)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~ 93 (423)
+.++.+.+...+..+++++|+||+++++|+..+...+.++++++++|+.+|.+++..+... ..........++++|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~l~h~~~~~sp~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~--~~~~~~~~~~~~~~Y~v 87 (431)
T PLN03146 10 FSFSELSAAEAPKGGFTVDLIHRDSPKSPFYNPSETPSQRLRNAFRRSISRVNHFRPTDAS--PNDPQSDLISNGGEYLM 87 (431)
T ss_pred HHHhhhhhccccCCceEEEEEeCCCCCCCCCCCCCChhHHHHHHHHHHHHHHHHHhhcccc--CCccccCcccCCccEEE
Confidence 5566666666788899999999999999987777778899999999999999887543222 12334445567889999
Q ss_pred EEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC-CCCCC-CceeeEE
Q 014537 94 RISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK-SCSGV-NCQYSVS 171 (423)
Q Consensus 94 ~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~-~c~~~-~~~~~~~ 171 (423)
+|.||||||++.|++||||+++||+|.+|. .|..+.++.|||++|+||+.++|.++.|...... .|..+ .|.|.+.
T Consensus 88 ~i~iGTPpq~~~vi~DTGS~l~Wv~C~~C~--~C~~~~~~~fdps~SST~~~~~C~s~~C~~~~~~~~c~~~~~c~y~i~ 165 (431)
T PLN03146 88 NISIGTPPVPILAIADTGSDLIWTQCKPCD--DCYKQVSPLFDPKKSSTYKDVSCDSSQCQALGNQASCSDENTCTYSYS 165 (431)
T ss_pred EEEcCCCCceEEEEECCCCCcceEcCCCCc--ccccCCCCcccCCCCCCCcccCCCCcccccCCCCCCCCCCCCCeeEEE
Confidence 999999999999999999999999999998 8988888999999999999999999999876643 47554 6999999
Q ss_pred cCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCCCCCchhhhhhhcccCceEEEeccCC
Q 014537 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVPVS 251 (423)
Q Consensus 172 Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~~~~ 251 (423)
|+||+.+.|.+++|+|+|++..++.+.++++.|||+....+.|....+||||||++..|+++|++....++|||||.+..
T Consensus 166 Ygdgs~~~G~l~~Dtltlg~~~~~~~~v~~~~FGc~~~~~g~f~~~~~GilGLG~~~~Sl~sql~~~~~~~FSycL~~~~ 245 (431)
T PLN03146 166 YGDGSFTKGNLAVETLTIGSTSGRPVSFPGIVFGCGHNNGGTFDEKGSGIVGLGGGPLSLISQLGSSIGGKFSYCLVPLS 245 (431)
T ss_pred eCCCCceeeEEEEEEEEeccCCCCcceeCCEEEeCCCCCCCCccCCCceeEecCCCCccHHHHhhHhhCCcEEEECCCCC
Confidence 99999888999999999998655555799999999998877664468999999999999999987655679999997521
Q ss_pred -----CceeeeCCCCccCCCCeEEeecc-C-CCCceEEEeEEEEeccEEecc--------CCCcEEEecCCcceecChhH
Q 014537 252 -----STKINFGTNGIVSGPGVVSTPLT-K-AKTFYVLTIDAISVGNQRLGV--------STPDIVIDSGTTLTFLPQGY 316 (423)
Q Consensus 252 -----~g~l~fGg~~~~~g~~~~~~p~~-~-~~~~w~v~l~~i~v~~~~~~~--------~~~~~iiDsGt~~~~lp~~~ 316 (423)
.|.|+||+.+++.+.++.|+|++ + .+.+|.|+|++|+||++.+.. +..++||||||++++||+++
T Consensus 246 ~~~~~~g~l~fG~~~~~~~~~~~~tPl~~~~~~~~y~V~L~gIsVgg~~l~~~~~~~~~~~~g~~iiDSGTt~t~Lp~~~ 325 (431)
T PLN03146 246 SDSNGTSKINFGTNAIVSGSGVVSTPLVSKDPDTFYYLTLEAISVGSKKLPYTGSSKNGVEEGNIIIDSGTTLTLLPSDF 325 (431)
T ss_pred CCCCCcceEEeCCccccCCCCceEcccccCCCCCeEEEeEEEEEECCEECcCCccccccCCCCcEEEeCCccceecCHHH
Confidence 29999999766666568999998 3 467999999999999988621 23579999999999999999
Q ss_pred HHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEEEEecCCCcceech
Q 014537 317 NSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGN 396 (423)
Q Consensus 317 ~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~ 396 (423)
|++|.++|.+.+...........++.|+.......+|.|+|+|+|+++.|++++|+++..++..|+++... ...||||+
T Consensus 326 y~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~F~Ga~~~l~~~~~~~~~~~~~~Cl~~~~~-~~~~IlG~ 404 (431)
T PLN03146 326 YSELESAVEEAIGGERVSDPQGLLSLCYSSTSDIKLPIITAHFTGADVKLQPLNTFVKVSEDLVCFAMIPT-SSIAIFGN 404 (431)
T ss_pred HHHHHHHHHHHhccccCCCCCCCCCccccCCCCCCCCeEEEEECCCeeecCcceeEEEcCCCcEEEEEecC-CCceEECe
Confidence 99999999988864433233334567998644447899999999999999999999987777889998765 45799999
Q ss_pred hhhcceEEEEECCCCEEEEeeCCCCCC
Q 014537 397 IMQTNFLVGYDIEQQTVSFKPTDCTKQ 423 (423)
Q Consensus 397 ~fl~~~y~vfD~~~~~igfa~~~c~~~ 423 (423)
.|||++|++||++++|||||+++|+++
T Consensus 405 ~~q~~~~vvyDl~~~~igFa~~~C~~~ 431 (431)
T PLN03146 405 LAQMNFLVGYDLESKTVSFKPTDCTKM 431 (431)
T ss_pred eeEeeEEEEEECCCCEEeeecCCcCcC
Confidence 999999999999999999999999874
No 2
>PTZ00165 aspartyl protease; Provisional
Probab=100.00 E-value=9.2e-59 Score=462.80 Aligned_cols=306 Identities=22% Similarity=0.403 Sum_probs=253.8
Q ss_pred CccceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCC
Q 014537 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (423)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (423)
..++..++.+.+|+++|+||||||+|.|++||||+++||+|..|....| ..++.|||++|+||+...+...
T Consensus 109 ~~~~l~n~~d~~Y~~~I~IGTPpQ~f~Vv~DTGSS~lWVps~~C~~~~C--~~~~~yd~s~SSTy~~~~~~~~------- 179 (482)
T PTZ00165 109 LQQDLLNFHNSQYFGEIQVGTPPKSFVVVFDTGSSNLWIPSKECKSGGC--APHRKFDPKKSSTYTKLKLGDE------- 179 (482)
T ss_pred cceecccccCCeEEEEEEeCCCCceEEEEEeCCCCCEEEEchhcCcccc--cccCCCCccccCCcEecCCCCc-------
Confidence 4466678889999999999999999999999999999999999985567 5788999999999998432110
Q ss_pred CCCCCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCc------
Q 014537 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------ 230 (423)
Q Consensus 159 ~~c~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------ 230 (423)
...+.+.||+|+.. |.+++|+|+||+. .+++|.||+++..++ .| ...+|||||||++..+
T Consensus 180 ------~~~~~i~YGsGs~~-G~l~~DtV~ig~l-----~i~~q~FG~a~~~s~~~f~~~~~DGILGLg~~~~s~~s~~~ 247 (482)
T PTZ00165 180 ------SAETYIQYGTGECV-LALGKDTVKIGGL-----KVKHQSIGLAIEESLHPFADLPFDGLVGLGFPDKDFKESKK 247 (482)
T ss_pred ------cceEEEEeCCCcEE-EEEEEEEEEECCE-----EEccEEEEEEEeccccccccccccceeecCCCcccccccCC
Confidence 02578999999877 9999999999987 999999999998765 45 5678999999998652
Q ss_pred ---hhhhh---hhcccCceEEEeccCCC--ceeeeCC-CCccC--CCCeEEeeccCCCCceEEEeEEEEeccEEec--cC
Q 014537 231 ---LISQM---RTTIAGKFSYCLVPVSS--TKINFGT-NGIVS--GPGVVSTPLTKAKTFYVLTIDAISVGNQRLG--VS 297 (423)
Q Consensus 231 ---l~~ql---~~i~~~~Fs~~l~~~~~--g~l~fGg-~~~~~--g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~--~~ 297 (423)
++.+| +.+..++||+||.+..+ |+|+||| +.++. +.+++|+|+. ...+|.|++++|+|+++.+. ..
T Consensus 248 ~~p~~~~l~~qgli~~~~FS~yL~~~~~~~G~l~fGGiD~~~~~~~g~i~~~Pv~-~~~yW~i~l~~i~vgg~~~~~~~~ 326 (482)
T PTZ00165 248 ALPIVDNIKKQNLLKRNIFSFYMSKDLNQPGSISFGSADPKYTLEGHKIWWFPVI-STDYWEIEVVDILIDGKSLGFCDR 326 (482)
T ss_pred CCCHHHHHHHcCCcccceEEEEeccCCCCCCEEEeCCcCHHHcCCCCceEEEEcc-ccceEEEEeCeEEECCEEeeecCC
Confidence 22333 56788999999986533 9999999 44443 4459999999 88999999999999997763 35
Q ss_pred CCcEEEecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCc-----EEEeCCCceE
Q 014537 298 TPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGA-----DVKLSRSNFF 372 (423)
Q Consensus 298 ~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~-----~~~l~~~~~~ 372 (423)
...+|+||||+++++|++++++|.+++... .+|+... .+|+|+|+|+|. +|.|+|++|+
T Consensus 327 ~~~aIiDTGTSli~lP~~~~~~i~~~i~~~-------------~~C~~~~---~lP~itf~f~g~~g~~v~~~l~p~dYi 390 (482)
T PTZ00165 327 KCKAAIDTGSSLITGPSSVINPLLEKIPLE-------------EDCSNKD---SLPRISFVLEDVNGRKIKFDMDPEDYV 390 (482)
T ss_pred ceEEEEcCCCccEeCCHHHHHHHHHHcCCc-------------ccccccc---cCCceEEEECCCCCceEEEEEchHHee
Confidence 678999999999999999999998877431 1498654 689999999864 8999999999
Q ss_pred EEe----CCCeEEEE-EEecC-----CCcceechhhhcceEEEEECCCCEEEEeeCCCCC
Q 014537 373 VKV----SEDIVCSV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTK 422 (423)
Q Consensus 373 ~~~----~~~~~C~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~~ 422 (423)
++. .++..|+. |...+ +..||||++|||++|+|||++++|||||+++|+.
T Consensus 391 ~~~~~~~~~~~~C~~g~~~~d~~~~~g~~~ILGd~Flr~yy~VFD~~n~rIGfA~a~~~~ 450 (482)
T PTZ00165 391 IEEGDSEEQEHQCVIGIIPMDVPAPRGPLFVLGNNFIRKYYSIFDRDHMMVGLVPAKHDQ 450 (482)
T ss_pred eecccCCCCCCeEEEEEEECCCCCCCCceEEEchhhheeEEEEEeCCCCEEEEEeeccCC
Confidence 874 23568975 77643 3579999999999999999999999999999864
No 3
>cd05478 pepsin_A Pepsin A, aspartic protease produced in gastric mucosa of mammals. Pepsin, a well-known aspartic protease, is produced by the human gastric mucosa in seven different zymogen isoforms, subdivided into two types: pepsinogen A and pepsinogen C. The prosequence of the zymogens are self cleaved under acidic pH. The mature enzymes are called pepsin A and pepsin C, correspondingly. The well researched porcine pepsin is also in this pepsin A family. Pepsins play an integral role in the digestion process of vertebrates. Pepsins are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. More recently evolved enzymes have similar three-dimensional structures, however their amino acid sequences are more divergent except for the conserved catalytic site motif. Pepsins specifically cleave bonds in peptides which
Probab=100.00 E-value=3.7e-56 Score=428.31 Aligned_cols=296 Identities=26% Similarity=0.460 Sum_probs=250.7
Q ss_pred eecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCC
Q 014537 84 IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (423)
Q Consensus 84 ~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (423)
.+..+..|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++...
T Consensus 4 ~n~~~~~Y~~~i~vGtp~q~~~v~~DTGS~~~wv~~~~C~~~~c--~~~~~f~~~~Sst~~~~~---------------- 65 (317)
T cd05478 4 TNYLDMEYYGTISIGTPPQDFTVIFDTGSSNLWVPSVYCSSQAC--SNHNRFNPRQSSTYQSTG---------------- 65 (317)
T ss_pred ccccCCEEEEEEEeCCCCcEEEEEEeCCCccEEEecCCCCcccc--cccCcCCCCCCcceeeCC----------------
Confidence 34568899999999999999999999999999999999985556 567899999999999876
Q ss_pred CCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC--CCCcceeeecCCCCCc------hhhhh
Q 014537 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGLGGGDIS------LISQM 235 (423)
Q Consensus 164 ~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGLg~~~~s------l~~ql 235 (423)
+.|.+.|++|+. .|.+++|+|+||+. .++++.|||+....+.+ ....+||||||++..+ ++.||
T Consensus 66 --~~~~~~yg~gs~-~G~~~~D~v~ig~~-----~i~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~L 137 (317)
T cd05478 66 --QPLSIQYGTGSM-TGILGYDTVQVGGI-----SDTNQIFGLSETEPGSFFYYAPFDGILGLAYPSIASSGATPVFDNM 137 (317)
T ss_pred --cEEEEEECCceE-EEEEeeeEEEECCE-----EECCEEEEEEEecCccccccccccceeeeccchhcccCCCCHHHHH
Confidence 899999999985 59999999999987 89999999998876654 3468999999987543 44444
Q ss_pred ---hhcccCceEEEeccCCC--ceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEec-cCCCcEEEecCC
Q 014537 236 ---RTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVIDSGT 307 (423)
Q Consensus 236 ---~~i~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~iiDsGt 307 (423)
+.+.++.||+||.+... |+|+||| .+++.|+ +.|+|+. ...+|.|++++++||++.+. .....+||||||
T Consensus 138 ~~~g~i~~~~FS~~L~~~~~~~g~l~~Gg~d~~~~~g~-l~~~p~~-~~~~w~v~l~~v~v~g~~~~~~~~~~~iiDTGt 215 (317)
T cd05478 138 MSQGLVSQDLFSVYLSSNGQQGSVVTFGGIDPSYYTGS-LNWVPVT-AETYWQITVDSVTINGQVVACSGGCQAIVDTGT 215 (317)
T ss_pred HhCCCCCCCEEEEEeCCCCCCCeEEEEcccCHHHccCc-eEEEECC-CCcEEEEEeeEEEECCEEEccCCCCEEEECCCc
Confidence 56678999999998653 9999999 3456665 9999998 78999999999999999873 345689999999
Q ss_pred cceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEE-EEe
Q 014537 308 TLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKG 386 (423)
Q Consensus 308 ~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~ 386 (423)
+++++|++++++|++++..... ..+.+.+ +|+... .+|+|+|+|+|++++|++++|+.+. +..|++ |..
T Consensus 216 s~~~lp~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~~---~~P~~~f~f~g~~~~i~~~~y~~~~--~~~C~~~~~~ 285 (317)
T cd05478 216 SLLVGPSSDIANIQSDIGASQN----QNGEMVV-NCSSIS---SMPDVVFTINGVQYPLPPSAYILQD--QGSCTSGFQS 285 (317)
T ss_pred hhhhCCHHHHHHHHHHhCCccc----cCCcEEe-CCcCcc---cCCcEEEEECCEEEEECHHHheecC--CCEEeEEEEe
Confidence 9999999999999988855321 1233434 488654 6899999999999999999998865 468987 777
Q ss_pred cC-CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 387 IT-NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 387 ~~-~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
.+ ...||||++|||++|+|||++++||||||
T Consensus 286 ~~~~~~~IlG~~fl~~~y~vfD~~~~~iG~A~ 317 (317)
T cd05478 286 MGLGELWILGDVFIRQYYSVFDRANNKVGLAP 317 (317)
T ss_pred CCCCCeEEechHHhcceEEEEeCCCCEEeecC
Confidence 64 46799999999999999999999999996
No 4
>cd05490 Cathepsin_D2 Cathepsin_D2, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets and flank
Probab=100.00 E-value=8.2e-56 Score=427.55 Aligned_cols=296 Identities=24% Similarity=0.448 Sum_probs=245.5
Q ss_pred cCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCC
Q 014537 86 PNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (423)
Q Consensus 86 ~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (423)
+.+.+|+++|.||||+|+|.|++||||+++||+|..|.. ..| ..++.|||++|+||+...
T Consensus 2 ~~~~~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C--~~~~~y~~~~SsT~~~~~---------------- 63 (325)
T cd05490 2 YMDAQYYGEIGIGTPPQTFTVVFDTGSSNLWVPSVHCSLLDIAC--WLHHKYNSSKSSTYVKNG---------------- 63 (325)
T ss_pred CcCCEEEEEEEECCCCcEEEEEEeCCCccEEEEcCCCCCCCccc--cCcCcCCcccCcceeeCC----------------
Confidence 457899999999999999999999999999999999972 356 467899999999999755
Q ss_pred CCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCc------hhhhh
Q 014537 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS------LISQM 235 (423)
Q Consensus 164 ~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s------l~~ql 235 (423)
+.|.+.|++|+. .|.+++|+|+||+. .++++.||+++...+ .| ....+||||||++..+ ++++|
T Consensus 64 --~~~~i~Yg~G~~-~G~~~~D~v~~g~~-----~~~~~~Fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 135 (325)
T cd05490 64 --TEFAIQYGSGSL-SGYLSQDTVSIGGL-----QVEGQLFGEAVKQPGITFIAAKFDGILGMAYPRISVDGVTPVFDNI 135 (325)
T ss_pred --cEEEEEECCcEE-EEEEeeeEEEECCE-----EEcCEEEEEEeeccCCcccceeeeEEEecCCccccccCCCCHHHHH
Confidence 899999999975 59999999999987 899999999988765 34 4578999999997665 22333
Q ss_pred ---hhcccCceEEEeccCC----CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEe-ccCCCcEEEec
Q 014537 236 ---RTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL-GVSTPDIVIDS 305 (423)
Q Consensus 236 ---~~i~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~-~~~~~~~iiDs 305 (423)
+.+..++||+||.+.. .|+|+||| ..++.|+ +.|+|+. ...+|.|++++|+|+++.. ......+||||
T Consensus 136 ~~~g~i~~~~FS~~L~~~~~~~~~G~l~~Gg~d~~~~~g~-l~~~~~~-~~~~w~v~l~~i~vg~~~~~~~~~~~aiiDS 213 (325)
T cd05490 136 MAQKLVEQNVFSFYLNRDPDAQPGGELMLGGTDPKYYTGD-LHYVNVT-RKAYWQIHMDQVDVGSGLTLCKGGCEAIVDT 213 (325)
T ss_pred HhcCCCCCCEEEEEEeCCCCCCCCCEEEECccCHHHcCCc-eEEEEcC-cceEEEEEeeEEEECCeeeecCCCCEEEECC
Confidence 5567899999998642 29999999 4455554 9999998 7889999999999998754 23457899999
Q ss_pred CCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCC--CeEEEE
Q 014537 306 GTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVCSV 383 (423)
Q Consensus 306 Gt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~--~~~C~~ 383 (423)
||+++++|++++++|.+++.+. ....+.+.+ +|+... .+|+|+|+|+|+.++|+|++|+++... ...|++
T Consensus 214 GTt~~~~p~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~P~i~f~fgg~~~~l~~~~y~~~~~~~~~~~C~~ 285 (325)
T cd05490 214 GTSLITGPVEEVRALQKAIGAV----PLIQGEYMI-DCEKIP---TLPVISFSLGGKVYPLTGEDYILKVSQRGTTICLS 285 (325)
T ss_pred CCccccCCHHHHHHHHHHhCCc----cccCCCEEe-cccccc---cCCCEEEEECCEEEEEChHHeEEeccCCCCCEEee
Confidence 9999999999999999888642 111334444 598654 689999999999999999999987543 457986
Q ss_pred -EEecC-----CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 384 -FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 384 -i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
|+..+ ...||||++|||++|+|||++++|||||+
T Consensus 286 ~~~~~~~~~~~~~~~ilGd~flr~~y~vfD~~~~~IGfA~ 325 (325)
T cd05490 286 GFMGLDIPPPAGPLWILGDVFIGRYYTVFDRDNDRVGFAK 325 (325)
T ss_pred EEEECCCCCCCCceEEEChHhheeeEEEEEcCCcEeeccC
Confidence 76532 45799999999999999999999999996
No 5
>cd06096 Plasmepsin_5 Plasmepsins are a class of aspartic proteinases produced by the plasmodium parasite. The family contains a group of aspartic proteinases homologous to plasmepsin 5. Plasmepsins are a class of at least 10 enzymes produced by the plasmodium parasite. Through their haemoglobin-degrading activity, they are an important cause of symptoms in malaria sufferers. This family of enzymes is a potential target for anti-malarial drugs. Plasmepsins are aspartic acid proteases, which means their active site contains two aspartic acid residues. These two aspartic acid residue act respectively as proton donor and proton acceptor, catalyzing the hydrolysis of peptide bond in proteins. Aspartic proteinases are composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalytic Asp residues are contained in an Asp-Thr-Gly-Ser/thr motif in both N- and C-terminal l
Probab=100.00 E-value=1.2e-55 Score=426.14 Aligned_cols=297 Identities=27% Similarity=0.481 Sum_probs=247.7
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 014537 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (423)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (423)
+.|+++|+||||+|++.|+|||||+++||+|.+|. .|..+.++.|||++|+|++.+.|++..|.. ...|.++.|.|
T Consensus 2 ~~Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~C~--~c~~~~~~~y~~~~Sst~~~~~C~~~~c~~--~~~~~~~~~~~ 77 (326)
T cd06096 2 AYYFIDIFIGNPPQKQSLILDTGSSSLSFPCSQCK--NCGIHMEPPYNLNNSITSSILYCDCNKCCY--CLSCLNNKCEY 77 (326)
T ss_pred ceEEEEEEecCCCeEEEEEEeCCCCceEEecCCCC--CcCCCCCCCcCcccccccccccCCCccccc--cCcCCCCcCcE
Confidence 57999999999999999999999999999999999 897677889999999999999999999953 34576668999
Q ss_pred eEEcCCCCeeeEEEEEEEEEecCCCCC--ceecCceEEEeEEecCCCC-CCCcceeeecCCCCCc--------hhhhhhh
Q 014537 169 SVSYGDGSFSNGNLATETVTLGSTTGQ--AVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDIS--------LISQMRT 237 (423)
Q Consensus 169 ~~~Yg~g~~~~G~~~~D~v~ig~~~~~--~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s--------l~~ql~~ 237 (423)
.+.|++|+.+.|.+++|+|+|++.... +....++.|||+....+.| ....+||||||+...+ +.+| ..
T Consensus 78 ~i~Y~~gs~~~G~~~~D~v~lg~~~~~~~~~~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~l~~~-~~ 156 (326)
T cd06096 78 SISYSEGSSISGFYFSDFVSFESYLNSNSEKESFKKIFGCHTHETNLFLTQQATGILGLSLTKNNGLPTPIILLFTK-RP 156 (326)
T ss_pred EEEECCCCceeeEEEEEEEEeccCCCCccccccccEEeccCccccCcccccccceEEEccCCcccccCchhHHHHHh-cc
Confidence 999999987789999999999976211 0111257899999887766 5678999999998653 1233 22
Q ss_pred cc--cCceEEEeccCCCceeeeCC--CCccC---------CCCeEEeeccCCCCceEEEeEEEEeccEE--e-ccCCCcE
Q 014537 238 TI--AGKFSYCLVPVSSTKINFGT--NGIVS---------GPGVVSTPLTKAKTFYVLTIDAISVGNQR--L-GVSTPDI 301 (423)
Q Consensus 238 i~--~~~Fs~~l~~~~~g~l~fGg--~~~~~---------g~~~~~~p~~~~~~~w~v~l~~i~v~~~~--~-~~~~~~~ 301 (423)
+. .++||+||.+.. |.|+||| ..++. ..++.|+|+. ...+|.|++++|+|+++. . ......+
T Consensus 157 ~~~~~~~FS~~l~~~~-G~l~~Gg~d~~~~~~~~~~~~~~~~~~~~~p~~-~~~~y~v~l~~i~vg~~~~~~~~~~~~~a 234 (326)
T cd06096 157 KLKKDKIFSICLSEDG-GELTIGGYDKDYTVRNSSIGNNKVSKIVWTPIT-RKYYYYVKLEGLSVYGTTSNSGNTKGLGM 234 (326)
T ss_pred cccCCceEEEEEcCCC-eEEEECccChhhhcccccccccccCCceEEecc-CCceEEEEEEEEEEcccccceecccCCCE
Confidence 33 489999999754 9999999 33333 1358999998 678999999999999885 2 3567889
Q ss_pred EEecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEe-CcEEEeCCCceEEEeCCCeE
Q 014537 302 VIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIV 380 (423)
Q Consensus 302 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~~~~~~~~~~~ 380 (423)
||||||++++||++++++|.+++ |+|+|+|+ |++++|+|++|+++..+..+
T Consensus 235 ivDSGTs~~~lp~~~~~~l~~~~----------------------------P~i~~~f~~g~~~~i~p~~y~~~~~~~~c 286 (326)
T cd06096 235 LVDSGSTLSHFPEDLYNKINNFF----------------------------PTITIIFENNLKIDWKPSSYLYKKESFWC 286 (326)
T ss_pred EEeCCCCcccCCHHHHHHHHhhc----------------------------CcEEEEEcCCcEEEECHHHhccccCCceE
Confidence 99999999999999999987655 89999998 79999999999988765555
Q ss_pred EEEEEecCCCcceechhhhcceEEEEECCCCEEEEeeCCCC
Q 014537 381 CSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCT 421 (423)
Q Consensus 381 C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~ 421 (423)
|+++... .+.+|||++|||++|+|||++++|||||+++|-
T Consensus 287 ~~~~~~~-~~~~ILG~~flr~~y~vFD~~~~riGfa~~~C~ 326 (326)
T cd06096 287 KGGEKSV-SNKPILGASFFKNKQIIFDLDNNRIGFVESNCP 326 (326)
T ss_pred EEEEecC-CCceEEChHHhcCcEEEEECcCCEEeeEcCCCC
Confidence 5556554 568999999999999999999999999999993
No 6
>cd05486 Cathespin_E Cathepsin E, non-lysosomal aspartic protease. Cathepsin E is an intracellular, non-lysosomal aspartic protease expressed in a variety of cells and tissues. The protease has proposed physiological roles in antigen presentation by the MHC class II system, in the biogenesis of the vasoconstrictor peptide endothelin, and in neurodegeneration associated with brain ischemia and aging. Cathepsin E is the only A1 aspartic protease that exists as a homodimer with a disulfide bridge linking the two monomers. Like many other aspartic proteases, it is synthesized as a zymogen which is catalytically inactive towards its natural substrates at neutral pH and which auto-activates in an acidic environment. The overall structure follows the general fold of aspartic proteases of the A1 family, it is composed of two structurally similar beta barrel lobes, each lobe contributing an aspartic acid residue to form a catalytic dyad that acts to cleave the substrate peptide bond. The catalyt
Probab=100.00 E-value=9.1e-56 Score=425.41 Aligned_cols=289 Identities=26% Similarity=0.464 Sum_probs=242.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeE
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (423)
|+++|+||||||+++|+|||||+++||+|..|....| ..++.|||++|+||+... +.|.+
T Consensus 1 Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~s~~C~~~~C--~~~~~y~~~~SsT~~~~~------------------~~~~i 60 (316)
T cd05486 1 YFGQISIGTPPQNFTVIFDTGSSNLWVPSIYCTSQAC--TKHNRFQPSESSTYVSNG------------------EAFSI 60 (316)
T ss_pred CeEEEEECCCCcEEEEEEcCCCccEEEecCCCCCccc--CccceECCCCCcccccCC------------------cEEEE
Confidence 8999999999999999999999999999999985577 467899999999999877 99999
Q ss_pred EcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCc----------hhhhhhhc
Q 014537 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS----------LISQMRTT 238 (423)
Q Consensus 171 ~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s----------l~~ql~~i 238 (423)
.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+ +.+| +.+
T Consensus 61 ~Yg~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~p~~~~l~~q-g~i 133 (316)
T cd05486 61 QYGTGSL-TGIIGIDQVTVEGI-----TVQNQQFAESVSEPGSTFQDSEFDGILGLAYPSLAVDGVTPVFDNMMAQ-NLV 133 (316)
T ss_pred EeCCcEE-EEEeeecEEEECCE-----EEcCEEEEEeeccCcccccccccceEeccCchhhccCCCCCHHHHHHhc-CCC
Confidence 9999975 59999999999987 899999999877655 34 4678999999997665 2344 556
Q ss_pred ccCceEEEeccCC----CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEec-cCCCcEEEecCCccee
Q 014537 239 IAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVIDSGTTLTF 311 (423)
Q Consensus 239 ~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~iiDsGt~~~~ 311 (423)
..++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|++++|+|+++.+. .....+||||||++++
T Consensus 134 ~~~~FS~~L~~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pi~-~~~~w~v~l~~i~v~g~~~~~~~~~~aiiDTGTs~~~ 211 (316)
T cd05486 134 ELPMFSVYMSRNPNSADGGELVFGGFDTSRFSGQ-LNWVPVT-VQGYWQIQLDNIQVGGTVIFCSDGCQAIVDTGTSLIT 211 (316)
T ss_pred CCCEEEEEEccCCCCCCCcEEEEcccCHHHcccc-eEEEECC-CceEEEEEeeEEEEecceEecCCCCEEEECCCcchhh
Confidence 7899999998642 29999999 3566665 9999999 78999999999999998763 3457899999999999
Q ss_pred cChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEe--CCCeEEEE-EEecC
Q 014537 312 LPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKV--SEDIVCSV-FKGIT 388 (423)
Q Consensus 312 lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~--~~~~~C~~-i~~~~ 388 (423)
+|++++++|.+++... . ..+.+.+ +|+... .+|+|+|+|+|+.++|+|++|++.. .++..|++ |+..+
T Consensus 212 lP~~~~~~l~~~~~~~----~-~~~~~~~-~C~~~~---~~p~i~f~f~g~~~~l~~~~y~~~~~~~~~~~C~~~~~~~~ 282 (316)
T cd05486 212 GPSGDIKQLQNYIGAT----A-TDGEYGV-DCSTLS---LMPSVTFTINGIPYSLSPQAYTLEDQSDGGGYCSSGFQGLD 282 (316)
T ss_pred cCHHHHHHHHHHhCCc----c-cCCcEEE-eccccc---cCCCEEEEECCEEEEeCHHHeEEecccCCCCEEeeEEEECC
Confidence 9999999998777432 1 1333444 487543 6899999999999999999999875 23568986 76532
Q ss_pred -----CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 389 -----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 389 -----~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
...||||++|||++|+|||++++|||||+
T Consensus 283 ~~~~~~~~~ILGd~flr~~y~vfD~~~~~IGfA~ 316 (316)
T cd05486 283 IPPPAGPLWILGDVFIRQYYSVFDRGNNRVGFAP 316 (316)
T ss_pred CCCCCCCeEEEchHHhcceEEEEeCCCCEeeccC
Confidence 35799999999999999999999999996
No 7
>KOG1339 consensus Aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-55 Score=431.07 Aligned_cols=332 Identities=41% Similarity=0.727 Sum_probs=271.9
Q ss_pred eeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCC
Q 014537 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (423)
Q Consensus 83 ~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (423)
.....+++|+++|.||||||+|.|++||||+++||+|.+|.. .|..+.++.|||++|+||+..+|.++.|.......|.
T Consensus 39 ~~~~~~~~Y~~~i~IGTPpq~f~v~~DTGS~~lWV~c~~c~~-~C~~~~~~~f~p~~SSt~~~~~c~~~~c~~~~~~~~~ 117 (398)
T KOG1339|consen 39 LSSYSSGEYYGNISIGTPPQSFTVVLDTGSDLLWVPCAPCSS-ACYSQHNPIFDPSASSTYKSVGCSSPRCKSLPQSCSP 117 (398)
T ss_pred cccccccccEEEEecCCCCeeeEEEEeCCCCceeeccccccc-cccccCCCccCccccccccccCCCCccccccccCccc
Confidence 334567799999999999999999999999999999999974 6876555669999999999999999999988877555
Q ss_pred CCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC-C-CCcceeeecCCCCCchhhhhhhcc-
Q 014537 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-N-SKTTGIVGLGGGDISLISQMRTTI- 239 (423)
Q Consensus 163 ~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~sl~~ql~~i~- 239 (423)
...|.|.+.|+||+.+.|++++|+|+|++.+ .+.++++.|||+....+.+ . ...+||||||+.++++.+|+....
T Consensus 118 ~~~C~y~i~Ygd~~~~~G~l~~Dtv~~~~~~--~~~~~~~~FGc~~~~~g~~~~~~~~dGIlGLg~~~~S~~~q~~~~~~ 195 (398)
T KOG1339|consen 118 NSSCPYSIQYGDGSSTSGYLATDTVTFGGTT--SLPVPNQTFGCGTNNPGSFGLFAAFDGILGLGRGSLSVPSQLPSFYN 195 (398)
T ss_pred CCcCceEEEeCCCCceeEEEEEEEEEEcccc--ccccccEEEEeeecCccccccccccceEeecCCCCccceeecccccC
Confidence 5599999999998888899999999999832 2277889999999987643 2 568999999999999999976543
Q ss_pred -cCceEEEeccCC-----CceeeeCC--CCccCCCCeEEeeccCCC--CceEEEeEEEEeccEE-----eccC-CCcEEE
Q 014537 240 -AGKFSYCLVPVS-----STKINFGT--NGIVSGPGVVSTPLTKAK--TFYVLTIDAISVGNQR-----LGVS-TPDIVI 303 (423)
Q Consensus 240 -~~~Fs~~l~~~~-----~g~l~fGg--~~~~~g~~~~~~p~~~~~--~~w~v~l~~i~v~~~~-----~~~~-~~~~ii 303 (423)
.++||+||.+.+ .|.|+||+ ..++.+ .++|+|+. .. .+|.|+|++|+|+++. .... ..++|+
T Consensus 196 ~~~~FS~cL~~~~~~~~~~G~i~fG~~d~~~~~~-~l~~tPl~-~~~~~~y~v~l~~I~vgg~~~~~~~~~~~~~~~~ii 273 (398)
T KOG1339|consen 196 AINVFSYCLSSNGSPSSGGGSIIFGGVDSSHYTG-SLTYTPLL-SNPSTYYQVNLDGISVGGKRPIGSSLFCTDGGGAII 273 (398)
T ss_pred CceeEEEEeCCCCCCCCCCcEEEECCCcccCcCC-ceEEEeec-cCCCccEEEEEeEEEECCccCCCcceEecCCCCEEE
Confidence 336999999874 39999999 333444 49999999 33 4999999999999732 2222 589999
Q ss_pred ecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCC-CCCCeEEEEEe-CcEEEeCCCceEEEeCCCeE-
Q 014537 304 DSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSL-SQVPEVTIHFR-GADVKLSRSNFFVKVSEDIV- 380 (423)
Q Consensus 304 DsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~-~~~P~i~~~f~-g~~~~l~~~~~~~~~~~~~~- 380 (423)
||||++++||.++|++|.+++...+.. ......+ +..|+..... ..+|.|+|+|+ |+.|.+++++|+++..++..
T Consensus 274 DSGTs~t~lp~~~y~~i~~~~~~~~~~-~~~~~~~-~~~C~~~~~~~~~~P~i~~~f~~g~~~~l~~~~y~~~~~~~~~~ 351 (398)
T KOG1339|consen 274 DSGTSLTYLPTSAYNALREAIGAEVSV-VGTDGEY-FVPCFSISTSGVKLPDITFHFGGGAVFSLPPKNYLVEVSDGGGV 351 (398)
T ss_pred ECCcceeeccHHHHHHHHHHHHhheec-cccCCce-eeecccCCCCcccCCcEEEEECCCcEEEeCccceEEEECCCCCc
Confidence 999999999999999999999876411 1112223 3469977521 13899999999 79999999999998876444
Q ss_pred EEEEEecC-C-CcceechhhhcceEEEEECC-CCEEEEee--CCCC
Q 014537 381 CSVFKGIT-N-SVPIYGNIMQTNFLVGYDIE-QQTVSFKP--TDCT 421 (423)
Q Consensus 381 C~~i~~~~-~-~~~ilG~~fl~~~y~vfD~~-~~~igfa~--~~c~ 421 (423)
|+++.... . ..||||+.|||+++++||.. ++|||||+ ..|.
T Consensus 352 Cl~~~~~~~~~~~~ilG~~~~~~~~~~~D~~~~~riGfa~~~~~c~ 397 (398)
T KOG1339|consen 352 CLAFFNGMDSGPLWILGDVFQQNYLVVFDLGENSRVGFAPALTNCS 397 (398)
T ss_pred eeeEEecCCCCceEEEchHHhCCEEEEEeCCCCCEEEeccccccCC
Confidence 99955443 3 48999999999999999999 99999999 7785
No 8
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=100.00 E-value=1.1e-54 Score=417.81 Aligned_cols=286 Identities=26% Similarity=0.439 Sum_probs=240.4
Q ss_pred eeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCC-CCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCC
Q 014537 83 DIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP-PSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSC 161 (423)
Q Consensus 83 ~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~-~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c 161 (423)
+.+..+.+|+++|.||||+|++.|+|||||+++||+|..|. ...|. .++.|||++|+||+...
T Consensus 3 l~n~~~~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~~C~--~~~~y~~~~SsT~~~~~-------------- 66 (317)
T cd06098 3 LKNYLDAQYFGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCYFSIACY--FHSKYKSSKSSTYKKNG-------------- 66 (317)
T ss_pred ccccCCCEEEEEEEECCCCeEEEEEECCCccceEEecCCCCCCcccc--ccCcCCcccCCCcccCC--------------
Confidence 34567889999999999999999999999999999999996 34684 67899999999999876
Q ss_pred CCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCch--------
Q 014537 162 SGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL-------- 231 (423)
Q Consensus 162 ~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl-------- 231 (423)
..+.+.|++|+. .|.+++|+|+||+. .++++.||++..... .| ....+||||||++..+.
T Consensus 67 ----~~~~i~Yg~G~~-~G~~~~D~v~ig~~-----~v~~~~f~~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~ 136 (317)
T cd06098 67 ----TSASIQYGTGSI-SGFFSQDSVTVGDL-----VVKNQVFIEATKEPGLTFLLAKFDGILGLGFQEISVGKAVPVWY 136 (317)
T ss_pred ----CEEEEEcCCceE-EEEEEeeEEEECCE-----EECCEEEEEEEecCCccccccccceeccccccchhhcCCCCHHH
Confidence 889999999986 59999999999987 899999999987655 34 46789999999986542
Q ss_pred --hhhhhhcccCceEEEeccCC----CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEe--ccCCCcE
Q 014537 232 --ISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL--GVSTPDI 301 (423)
Q Consensus 232 --~~ql~~i~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~--~~~~~~~ 301 (423)
++| +.+..++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|++++|+|+++.+ ......+
T Consensus 137 ~l~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~a 213 (317)
T cd06098 137 NMVEQ-GLVKEPVFSFWLNRNPDEEEGGELVFGGVDPKHFKGE-HTYVPVT-RKGYWQFEMGDVLIGGKSTGFCAGGCAA 213 (317)
T ss_pred HHHhc-CCCCCCEEEEEEecCCCCCCCcEEEECccChhhcccc-eEEEecC-cCcEEEEEeCeEEECCEEeeecCCCcEE
Confidence 344 5677899999998642 29999999 4566665 9999998 7889999999999999875 2345689
Q ss_pred EEecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCC--Ce
Q 014537 302 VIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DI 379 (423)
Q Consensus 302 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~--~~ 379 (423)
||||||+++++|++++++|. +.+ +|+... .+|+|+|+|+|+.++|+|++|+++..+ ..
T Consensus 214 ivDTGTs~~~lP~~~~~~i~----------------~~~-~C~~~~---~~P~i~f~f~g~~~~l~~~~yi~~~~~~~~~ 273 (317)
T cd06098 214 IADSGTSLLAGPTTIVTQIN----------------SAV-DCNSLS---SMPNVSFTIGGKTFELTPEQYILKVGEGAAA 273 (317)
T ss_pred EEecCCcceeCCHHHHHhhh----------------ccC-Cccccc---cCCcEEEEECCEEEEEChHHeEEeecCCCCC
Confidence 99999999999998776652 223 498654 689999999999999999999987543 45
Q ss_pred EEEE-EEecC-----CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 380 VCSV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 380 ~C~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
.|++ |+..+ ...||||++|||++|+|||++++|||||+
T Consensus 274 ~C~~~~~~~~~~~~~~~~~IlGd~Flr~~y~VfD~~~~~iGfA~ 317 (317)
T cd06098 274 QCISGFTALDVPPPRGPLWILGDVFMGAYHTVFDYGNLRVGFAE 317 (317)
T ss_pred EEeceEEECCCCCCCCCeEEechHHhcccEEEEeCCCCEEeecC
Confidence 8987 76432 34799999999999999999999999996
No 9
>cd05477 gastricsin Gastricsins, asparate proteases produced in gastric mucosa. Gastricsin is also called pepsinogen C. Gastricsins are produced in gastric mucosa of mammals. It is synthesized by the chief cells in the stomach as an inactive zymogen. It is self-converted to a mature enzyme under acidic conditions. Human gastricsin is distributed throughout all parts of the stomach. Gastricsin is synthesized as an inactive progastricsin that has an approximately 40 residue prosequence. It is self-converting to a mature enzyme being triggered by a drop in pH from neutrality to acidic conditions. Like other aspartic proteases, gastricsin are characterized by two catalytic aspartic residues at the active site, and display optimal activity at acidic pH. Mature enzyme has a pseudo-2-fold symmetry that passes through the active site between the catalytic aspartate residues. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic aspartate residue, with an exten
Probab=100.00 E-value=1.5e-54 Score=417.41 Aligned_cols=293 Identities=27% Similarity=0.491 Sum_probs=246.0
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCce
Q 014537 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (423)
Q Consensus 88 ~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (423)
|..|+++|.||||||++.|++||||+++||+|..|....| ..++.|||++|+||+... |.
T Consensus 1 ~~~y~~~i~iGtP~q~~~v~~DTGS~~~wv~~~~C~~~~C--~~~~~f~~~~SsT~~~~~------------------~~ 60 (318)
T cd05477 1 DMSYYGEISIGTPPQNFLVLFDTGSSNLWVPSVLCQSQAC--TNHTKFNPSQSSTYSTNG------------------ET 60 (318)
T ss_pred CcEEEEEEEECCCCcEEEEEEeCCCccEEEccCCCCCccc--cccCCCCcccCCCceECC------------------cE
Confidence 4679999999999999999999999999999999986667 457899999999999876 99
Q ss_pred eeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCC-C-CCCcceeeecCCCCC------chhhhh---h
Q 014537 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI------SLISQM---R 236 (423)
Q Consensus 168 ~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~------sl~~ql---~ 236 (423)
|.+.|++|+. .|.+++|+|+||+. .++++.|||+....+. + ....+||||||++.. ++++|| +
T Consensus 61 ~~~~Yg~Gs~-~G~~~~D~i~~g~~-----~i~~~~Fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~~~~~~L~~~g 134 (318)
T cd05477 61 FSLQYGSGSL-TGIFGYDTVTVQGI-----IITNQEFGLSETEPGTNFVYAQFDGILGLAYPSISAGGATTVMQGMMQQN 134 (318)
T ss_pred EEEEECCcEE-EEEEEeeEEEECCE-----EEcCEEEEEEEecccccccccceeeEeecCcccccccCCCCHHHHHHhcC
Confidence 9999999986 59999999999987 8999999999987552 3 456799999998643 355555 4
Q ss_pred hcccCceEEEeccCC---CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEec--cCCCcEEEecCCcc
Q 014537 237 TTIAGKFSYCLVPVS---STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG--VSTPDIVIDSGTTL 309 (423)
Q Consensus 237 ~i~~~~Fs~~l~~~~---~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~--~~~~~~iiDsGt~~ 309 (423)
.+..+.||+||.+.. .|.|+||| .+++.++ +.|+|+. ...+|.|++++|+|+++.+. .....+||||||++
T Consensus 135 ~i~~~~FS~~L~~~~~~~~g~l~fGg~d~~~~~g~-l~~~pv~-~~~~w~v~l~~i~v~g~~~~~~~~~~~~iiDSGtt~ 212 (318)
T cd05477 135 LLQAPIFSFYLSGQQGQQGGELVFGGVDNNLYTGQ-IYWTPVT-SETYWQIGIQGFQINGQATGWCSQGCQAIVDTGTSL 212 (318)
T ss_pred CcCCCEEEEEEcCCCCCCCCEEEEcccCHHHcCCc-eEEEecC-CceEEEEEeeEEEECCEEecccCCCceeeECCCCcc
Confidence 567899999998752 29999999 3456654 9999998 78999999999999998762 34567999999999
Q ss_pred eecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEE-EEecC
Q 014537 310 TFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKGIT 388 (423)
Q Consensus 310 ~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~~~ 388 (423)
+++|++++++|++++..... ..+.+.+ +|+... .+|.|+|+|+|+++.|++++|+.+. +..|+. |.+..
T Consensus 213 ~~lP~~~~~~l~~~~~~~~~----~~~~~~~-~C~~~~---~~p~l~~~f~g~~~~v~~~~y~~~~--~~~C~~~i~~~~ 282 (318)
T cd05477 213 LTAPQQVMSTLMQSIGAQQD----QYGQYVV-NCNNIQ---NLPTLTFTINGVSFPLPPSAYILQN--NGYCTVGIEPTY 282 (318)
T ss_pred EECCHHHHHHHHHHhCCccc----cCCCEEE-eCCccc---cCCcEEEEECCEEEEECHHHeEecC--CCeEEEEEEecc
Confidence 99999999999998865432 1233333 488654 5899999999999999999998875 457975 76431
Q ss_pred ------CCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 389 ------NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 389 ------~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
...||||++|||++|++||++++|||||++
T Consensus 283 ~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~ig~a~~ 318 (318)
T cd05477 283 LPSQNGQPLWILGDVFLRQYYSVYDLGNNQVGFATA 318 (318)
T ss_pred cCCCCCCceEEEcHHHhhheEEEEeCCCCEEeeeeC
Confidence 246999999999999999999999999985
No 10
>cd05472 cnd41_like Chloroplast Nucleoids DNA-binding Protease, catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco. Antisense tobacco with reduced amount of CND41 maintained green leaves and constant protein levels, especially Rubisco. CND41 has DNA-binding as well as aspartic protease activities. The pepsin-like aspartic protease domain is located at the C-terminus of the protein. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. This fami
Probab=100.00 E-value=4.1e-54 Score=411.00 Aligned_cols=282 Identities=41% Similarity=0.798 Sum_probs=235.2
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 014537 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (423)
Q Consensus 90 ~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (423)
+|+++|.||||||++.|++||||+++||+|. .| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~c~-----~c--------------------------------------~~~~ 37 (299)
T cd05472 1 EYVVTVGLGTPARDQTVIVDTGSDLTWVQCQ-----PC--------------------------------------CLYQ 37 (299)
T ss_pred CeEEEEecCCCCcceEEEecCCCCcccccCC-----CC--------------------------------------Ceee
Confidence 5999999999999999999999999999765 34 5688
Q ss_pred EEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCCCCCchhhhhhhcccCceEEEecc
Q 014537 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLVP 249 (423)
Q Consensus 170 ~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~~ 249 (423)
+.|++|+.++|.+++|+|+|++.. .++++.|||+...++.+ ...+||||||+...++.+|+.....++||+||.+
T Consensus 38 i~Yg~Gs~~~G~~~~D~v~ig~~~----~~~~~~Fg~~~~~~~~~-~~~~GilGLg~~~~s~~~ql~~~~~~~FS~~L~~ 112 (299)
T cd05472 38 VSYGDGSYTTGDLATDTLTLGSSD----VVPGFAFGCGHDNEGLF-GGAAGLLGLGRGKLSLPSQTASSYGGVFSYCLPD 112 (299)
T ss_pred eEeCCCceEEEEEEEEEEEeCCCC----ccCCEEEECCccCCCcc-CCCCEEEECCCCcchHHHHhhHhhcCceEEEccC
Confidence 999999987899999999999741 67899999999877655 4789999999999999999876667999999987
Q ss_pred CC---CceeeeCCCCccCCCCeEEeecc-C--CCCceEEEeEEEEeccEEec-----cCCCcEEEecCCcceecChhHHH
Q 014537 250 VS---STKINFGTNGIVSGPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG-----VSTPDIVIDSGTTLTFLPQGYNS 318 (423)
Q Consensus 250 ~~---~g~l~fGg~~~~~g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~-----~~~~~~iiDsGt~~~~lp~~~~~ 318 (423)
.. .|+|+|||.+...| ++.|+|+. + ...+|.|+|++|+||++.+. .....+||||||+++++|+++|+
T Consensus 113 ~~~~~~G~l~fGg~d~~~g-~l~~~pv~~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~~~~~~ivDSGTt~~~lp~~~~~ 191 (299)
T cd05472 113 RSSSSSGYLSFGAAASVPA-GASFTPMLSNPRVPTFYYVGLTGISVGGRRLPIPPASFGAGGVIIDSGTVITRLPPSAYA 191 (299)
T ss_pred CCCCCCceEEeCCccccCC-CceECCCccCCCCCCeEEEeeEEEEECCEECCCCccccCCCCeEEeCCCcceecCHHHHH
Confidence 43 39999999433355 49999998 3 24799999999999999873 23568999999999999999999
Q ss_pred HHHHHHHhhhccCcCCCCCCCcccccccCCC--CCCCeEEEEEe-CcEEEeCCCceEEEe-CCCeEEEEEEecC--CCcc
Q 014537 319 NLLSVMSSMIEAQPVADPTGSLELCYSFNSL--SQVPEVTIHFR-GADVKLSRSNFFVKV-SEDIVCSVFKGIT--NSVP 392 (423)
Q Consensus 319 ~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~--~~~P~i~~~f~-g~~~~l~~~~~~~~~-~~~~~C~~i~~~~--~~~~ 392 (423)
+|.+++.+...........+.++.|+..++. ..+|+|+|+|+ |++++|++++|+++. ..+..|+++...+ ...|
T Consensus 192 ~l~~~l~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~f~f~~g~~~~l~~~~y~~~~~~~~~~C~~~~~~~~~~~~~ 271 (299)
T cd05472 192 ALRDAFRAAMAAYPRAPGFSILDTCYDLSGFRSVSVPTVSLHFQGGADVELDASGVLYPVDDSSQVCLAFAGTSDDGGLS 271 (299)
T ss_pred HHHHHHHHHhccCCCCCCCCCCCccCcCCCCcCCccCCEEEEECCCCEEEeCcccEEEEecCCCCEEEEEeCCCCCCCCE
Confidence 9999998876432211233344469876432 36999999998 799999999999843 4467899976653 4679
Q ss_pred eechhhhcceEEEEECCCCEEEEeeCCC
Q 014537 393 IYGNIMQTNFLVGYDIEQQTVSFKPTDC 420 (423)
Q Consensus 393 ilG~~fl~~~y~vfD~~~~~igfa~~~c 420 (423)
|||+.|||++|+|||++++|||||+++|
T Consensus 272 ilG~~fl~~~~vvfD~~~~~igfa~~~C 299 (299)
T cd05472 272 IIGNVQQQTFRVVYDVAGGRIGFAPGGC 299 (299)
T ss_pred EEchHHccceEEEEECCCCEEeEecCCC
Confidence 9999999999999999999999999999
No 11
>cd05487 renin_like Renin stimulates production of angiotensin and thus affects blood pressure. Renin, also known as angiotensinogenase, is a circulating enzyme that participates in the renin-angiotensin system that mediates extracellular volume, arterial vasoconstriction, and consequently mean arterial blood pressure. The enzyme is secreted by the kidneys from specialized juxtaglomerular cells in response to decreases in glomerular filtration rate (a consequence of low blood volume), diminished filtered sodium chloride and sympathetic nervous system innervation. The enzyme circulates in the blood stream and hydrolyzes angiotensinogen secreted from the liver into the peptide angiotensin I. Angiotensin I is further cleaved in the lungs by endothelial bound angiotensin converting enzyme (ACE) into angiotensin II, the final active peptide. Renin is a member of the aspartic protease family. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate r
Probab=100.00 E-value=2.5e-54 Score=417.03 Aligned_cols=295 Identities=25% Similarity=0.426 Sum_probs=247.0
Q ss_pred ecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCC
Q 014537 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCS 162 (423)
Q Consensus 85 ~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~ 162 (423)
+..+..|+++|+||||+|+++|++||||+++||++..|.. ..| ..++.|||++|+||+...
T Consensus 3 ~~~~~~y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~SsT~~~~~--------------- 65 (326)
T cd05487 3 NYLDTQYYGEIGIGTPPQTFKVVFDTGSSNLWVPSSKCSPLYTAC--VTHNLYDASDSSTYKENG--------------- 65 (326)
T ss_pred ccCCCeEEEEEEECCCCcEEEEEEeCCccceEEccCCCcCcchhh--cccCcCCCCCCeeeeECC---------------
Confidence 4567899999999999999999999999999999998873 246 467899999999999876
Q ss_pred CCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCc----------
Q 014537 163 GVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDIS---------- 230 (423)
Q Consensus 163 ~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~s---------- 230 (423)
|.|.+.|++|+ +.|.+++|+|+|++. .+ ++.||++..... .+ ....+||||||++..+
T Consensus 66 ---~~~~~~Yg~g~-~~G~~~~D~v~~g~~-----~~-~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~s~~~~~~~~~~ 135 (326)
T cd05487 66 ---TEFTIHYASGT-VKGFLSQDIVTVGGI-----PV-TQMFGEVTALPAIPFMLAKFDGVLGMGYPKQAIGGVTPVFDN 135 (326)
T ss_pred ---EEEEEEeCCce-EEEEEeeeEEEECCE-----Ee-eEEEEEEEeccCCccceeecceEEecCChhhcccCCCCHHHH
Confidence 99999999998 569999999999986 56 478999987643 34 4578999999997654
Q ss_pred hhhhhhhcccCceEEEeccCC----CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEec-cCCCcEEE
Q 014537 231 LISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLG-VSTPDIVI 303 (423)
Q Consensus 231 l~~ql~~i~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~-~~~~~~ii 303 (423)
|++| +.+..++||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|+|++++|+++.+. .....++|
T Consensus 136 L~~q-g~i~~~~FS~~L~~~~~~~~~G~l~fGg~d~~~y~g~-l~~~~~~-~~~~w~v~l~~i~vg~~~~~~~~~~~aii 212 (326)
T cd05487 136 IMSQ-GVLKEDVFSVYYSRDSSHSLGGEIVLGGSDPQHYQGD-FHYINTS-KTGFWQIQMKGVSVGSSTLLCEDGCTAVV 212 (326)
T ss_pred HHhc-CCCCCCEEEEEEeCCCCCCCCcEEEECCcChhhccCc-eEEEECC-cCceEEEEecEEEECCEEEecCCCCEEEE
Confidence 5666 7788999999998753 29999999 4566665 9999998 78899999999999998863 34568999
Q ss_pred ecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCC--CeEE
Q 014537 304 DSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DIVC 381 (423)
Q Consensus 304 DsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~--~~~C 381 (423)
||||+++++|++++++|++++..... .+.+.+ +|+... .+|+|+|+|+|+.++|++++|+++..+ +..|
T Consensus 213 DSGts~~~lP~~~~~~l~~~~~~~~~-----~~~y~~-~C~~~~---~~P~i~f~fgg~~~~v~~~~yi~~~~~~~~~~C 283 (326)
T cd05487 213 DTGASFISGPTSSISKLMEALGAKER-----LGDYVV-KCNEVP---TLPDISFHLGGKEYTLSSSDYVLQDSDFSDKLC 283 (326)
T ss_pred CCCccchhCcHHHHHHHHHHhCCccc-----CCCEEE-eccccC---CCCCEEEEECCEEEEeCHHHhEEeccCCCCCEE
Confidence 99999999999999999988864321 233434 498654 689999999999999999999987643 5679
Q ss_pred EE-EEecC-----CCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 382 SV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 382 ~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
+. |+..+ .+.||||++|||++|+|||++++|||||++
T Consensus 284 ~~~~~~~~~~~~~~~~~ilG~~flr~~y~vfD~~~~~IGfA~a 326 (326)
T cd05487 284 TVAFHAMDIPPPTGPLWVLGATFIRKFYTEFDRQNNRIGFALA 326 (326)
T ss_pred EEEEEeCCCCCCCCCeEEEehHHhhccEEEEeCCCCEEeeeeC
Confidence 76 77532 357999999999999999999999999985
No 12
>cd05488 Proteinase_A_fungi Fungal Proteinase A , aspartic proteinase superfamily. Fungal Proteinase A, a proteolytic enzyme distributed among a variety of organisms, is a member of the aspartic proteinase superfamily. In Saccharomyces cerevisiae, targeted to the vacuole as a zymogen, activation of proteinases A at acidic pH can occur by two different pathways: a one-step process to release mature proteinase A, involving the intervention of proteinase B, or a step-wise pathway via the auto-activation product known as pseudo-proteinase A. Once active, S. cerevisiae proteinase A is essential to the activities of other yeast vacuolar hydrolases, including proteinase B and carboxypeptidase Y. The mature enzyme is bilobal, with each lobe providing one of the two catalytically essential aspartic acid residues in the active site. The crystal structure of free proteinase A shows that flap loop is atypically pointing directly into the S(1) pocket of the enzyme. Proteinase A preferentially hydro
Probab=100.00 E-value=3.4e-54 Score=415.08 Aligned_cols=295 Identities=26% Similarity=0.481 Sum_probs=247.3
Q ss_pred eecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCC
Q 014537 84 IIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSG 163 (423)
Q Consensus 84 ~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~ 163 (423)
.++.+..|+++|.||||+|++.|++||||+++||+|..|....| ..++.|||++|+|++...
T Consensus 4 ~n~~~~~Y~~~i~iGtp~q~~~v~~DTGSs~~wv~~~~C~~~~C--~~~~~y~~~~Sst~~~~~---------------- 65 (320)
T cd05488 4 TNYLNAQYFTDITLGTPPQKFKVILDTGSSNLWVPSVKCGSIAC--FLHSKYDSSASSTYKANG---------------- 65 (320)
T ss_pred cccCCCEEEEEEEECCCCcEEEEEEecCCcceEEEcCCCCCccc--CCcceECCCCCcceeeCC----------------
Confidence 34567889999999999999999999999999999999986678 456799999999999876
Q ss_pred CCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCC-C-CCCcceeeecCCCCCch----------
Q 014537 164 VNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISL---------- 231 (423)
Q Consensus 164 ~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~sl---------- 231 (423)
|.+.+.|++|+. .|.+++|+|+|++. .++++.|||+....+. + ....+||||||++..+.
T Consensus 66 --~~~~~~y~~g~~-~G~~~~D~v~ig~~-----~~~~~~f~~a~~~~g~~~~~~~~dGilGLg~~~~s~~~~~~~~~~l 137 (320)
T cd05488 66 --TEFKIQYGSGSL-EGFVSQDTLSIGDL-----TIKKQDFAEATSEPGLAFAFGKFDGILGLAYDTISVNKIVPPFYNM 137 (320)
T ss_pred --CEEEEEECCceE-EEEEEEeEEEECCE-----EECCEEEEEEecCCCcceeeeeeceEEecCCccccccCCCCHHHHH
Confidence 899999999985 69999999999987 8999999999877553 3 35789999999987653
Q ss_pred hhhhhhcccCceEEEeccCC--CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEeccCCCcEEEecCC
Q 014537 232 ISQMRTTIAGKFSYCLVPVS--STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSGT 307 (423)
Q Consensus 232 ~~ql~~i~~~~Fs~~l~~~~--~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt 307 (423)
++| +.+..+.||+||.+.. .|.|+||| .+++.++ +.|+|+. ...+|.|++++|+||++.+......++|||||
T Consensus 138 ~~q-g~i~~~~FS~~L~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~-~~~~w~v~l~~i~vg~~~~~~~~~~~ivDSGt 214 (320)
T cd05488 138 INQ-GLLDEPVFSFYLGSSEEDGGEATFGGIDESRFTGK-ITWLPVR-RKAYWEVELEKIGLGDEELELENTGAAIDTGT 214 (320)
T ss_pred Hhc-CCCCCCEEEEEecCCCCCCcEEEECCcCHHHcCCc-eEEEeCC-cCcEEEEEeCeEEECCEEeccCCCeEEEcCCc
Confidence 234 6678899999999753 39999999 3455554 9999999 78899999999999998875556789999999
Q ss_pred cceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEE-EEe
Q 014537 308 TLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSV-FKG 386 (423)
Q Consensus 308 ~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~-i~~ 386 (423)
+++++|++++++|.+++.+.. ...+.+.+ +|+... .+|+|+|+|+|++++|++++|+++. ++.|++ |..
T Consensus 215 t~~~lp~~~~~~l~~~~~~~~----~~~~~~~~-~C~~~~---~~P~i~f~f~g~~~~i~~~~y~~~~--~g~C~~~~~~ 284 (320)
T cd05488 215 SLIALPSDLAEMLNAEIGAKK----SWNGQYTV-DCSKVD---SLPDLTFNFDGYNFTLGPFDYTLEV--SGSCISAFTG 284 (320)
T ss_pred ccccCCHHHHHHHHHHhCCcc----ccCCcEEe-eccccc---cCCCEEEEECCEEEEECHHHheecC--CCeEEEEEEE
Confidence 999999999999988875432 11334444 488653 6899999999999999999999864 347987 655
Q ss_pred cC-----CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 387 IT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 387 ~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
.+ ...||||++|||++|+|||++++|||||+
T Consensus 285 ~~~~~~~~~~~ilG~~fl~~~y~vfD~~~~~iG~a~ 320 (320)
T cd05488 285 MDFPEPVGPLAIVGDAFLRKYYSVYDLGNNAVGLAK 320 (320)
T ss_pred CcCCCCCCCeEEEchHHhhheEEEEeCCCCEEeecC
Confidence 32 34799999999999999999999999996
No 13
>cd05485 Cathepsin_D_like Cathepsin_D_like, pepsin family of proteinases. Cathepsin D is the major aspartic proteinase of the lysosomal compartment where it functions in protein catabolism. It is a member of the pepsin family of proteinases. This enzyme is distinguished from other members of the pepsin family by two features that are characteristic of lysosomal hydrolases. First, mature Cathepsin D is found predominantly in a two-chain form due to a posttranslational cleavage event. Second, it contains phosphorylated, N-linked oligosaccharides that target the enzyme to lysosomes via mannose-6-phosphate receptors. Cathepsin D preferentially attacks peptide bonds flanked by bulky hydrophobic amino acids and its pH optimum is between pH 2.8 and 4.0. Two active site aspartic acid residues are essential for the catalytic activity of aspartic proteinases. Like other aspartic proteinases, Cathepsin D is a bilobed molecule; the two evolutionary related lobes are mostly made up of beta-sheets an
Probab=100.00 E-value=4.2e-54 Score=415.66 Aligned_cols=299 Identities=27% Similarity=0.482 Sum_probs=249.2
Q ss_pred ceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCC--CCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC
Q 014537 82 ADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPP--SQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK 159 (423)
Q Consensus 82 ~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~--~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~ 159 (423)
.+.++.+..|+++|.||||+|++.|++||||+++||+|..|.. ..| ..++.|||++|+|++...
T Consensus 3 ~~~n~~~~~Y~~~i~vGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~c--~~~~~y~~~~Sst~~~~~------------ 68 (329)
T cd05485 3 PLSNYMDAQYYGVITIGTPPQSFKVVFDTGSSNLWVPSKKCSWTNIAC--LLHNKYDSTKSSTYKKNG------------ 68 (329)
T ss_pred cceeccCCeEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCCCCccc--cCCCeECCcCCCCeEECC------------
Confidence 3456778999999999999999999999999999999999972 246 357889999999999876
Q ss_pred CCCCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC-CC-CCCcceeeecCCCCCch------
Q 014537 160 SCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG-LF-NSKTTGIVGLGGGDISL------ 231 (423)
Q Consensus 160 ~c~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~-~~-~~~~~GilGLg~~~~sl------ 231 (423)
+.|.+.|++|+. .|.+++|+|+|++. .++++.||++....+ .| ....+||||||++..+.
T Consensus 69 ------~~~~i~Y~~g~~-~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGLg~~~~s~~~~~p~ 136 (329)
T cd05485 69 ------TEFAIQYGSGSL-SGFLSTDTVSVGGV-----SVKGQTFAEAINEPGLTFVAAKFDGILGMGYSSISVDGVVPV 136 (329)
T ss_pred ------eEEEEEECCceE-EEEEecCcEEECCE-----EECCEEEEEEEecCCccccccccceEEEcCCccccccCCCCH
Confidence 999999999985 69999999999987 889999999987654 34 46789999999987652
Q ss_pred ----hhhhhhcccCceEEEeccCC----CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEeccCCCcE
Q 014537 232 ----ISQMRTTIAGKFSYCLVPVS----STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDI 301 (423)
Q Consensus 232 ----~~ql~~i~~~~Fs~~l~~~~----~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 301 (423)
.+| +.+..+.||+||.+.. .|+|+||| .+++.|+ +.|+|+. ...+|.|++++++++++.+......+
T Consensus 137 ~~~l~~q-g~i~~~~FS~~l~~~~~~~~~G~l~fGg~d~~~~~g~-l~~~p~~-~~~~~~v~~~~i~v~~~~~~~~~~~~ 213 (329)
T cd05485 137 FYNMVNQ-KLVDAPVFSFYLNRDPSAKEGGELILGGSDPKHYTGN-FTYLPVT-RKGYWQFKMDSVSVGEGEFCSGGCQA 213 (329)
T ss_pred HHHHHhC-CCCCCCEEEEEecCCCCCCCCcEEEEcccCHHHcccc-eEEEEcC-CceEEEEEeeEEEECCeeecCCCcEE
Confidence 334 5677899999998643 29999999 3456664 9999998 78999999999999998875566789
Q ss_pred EEecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCC--Ce
Q 014537 302 VIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSE--DI 379 (423)
Q Consensus 302 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~--~~ 379 (423)
||||||+++++|++++++|.+++... ....+.+.+ +|+... .+|+|+|+|+|++++|++++|+++..+ ..
T Consensus 214 iiDSGtt~~~lP~~~~~~l~~~~~~~----~~~~~~~~~-~C~~~~---~~p~i~f~fgg~~~~i~~~~yi~~~~~~~~~ 285 (329)
T cd05485 214 IADTGTSLIAGPVDEIEKLNNAIGAK----PIIGGEYMV-NCSAIP---SLPDITFVLGGKSFSLTGKDYVLKVTQMGQT 285 (329)
T ss_pred EEccCCcceeCCHHHHHHHHHHhCCc----cccCCcEEE-eccccc---cCCcEEEEECCEEeEEChHHeEEEecCCCCC
Confidence 99999999999999999998887643 111233433 487543 579999999999999999999987653 46
Q ss_pred EEEE-EEecC-----CCcceechhhhcceEEEEECCCCEEEEee
Q 014537 380 VCSV-FKGIT-----NSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 380 ~C~~-i~~~~-----~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
.|++ |+..+ ...||||++|||++|+|||++++|||||+
T Consensus 286 ~C~~~~~~~~~~~~~~~~~IlG~~fl~~~y~vFD~~~~~ig~a~ 329 (329)
T cd05485 286 ICLSGFMGIDIPPPAGPLWILGDVFIGKYYTEFDLGNNRVGFAT 329 (329)
T ss_pred EEeeeEEECcCCCCCCCeEEEchHHhccceEEEeCCCCEEeecC
Confidence 8986 77532 35799999999999999999999999985
No 14
>PTZ00147 plasmepsin-1; Provisional
Probab=100.00 E-value=1.3e-53 Score=422.66 Aligned_cols=298 Identities=20% Similarity=0.385 Sum_probs=244.6
Q ss_pred cceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCC
Q 014537 81 QADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKS 160 (423)
Q Consensus 81 ~~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~ 160 (423)
.++.+..+.+|+++|+||||||++.|+|||||+++||+|..|....| +.++.|||++|+||+...
T Consensus 130 v~L~n~~n~~Y~~~I~IGTP~Q~f~Vi~DTGSsdlWVps~~C~~~~C--~~~~~yd~s~SsT~~~~~------------- 194 (453)
T PTZ00147 130 VELKDLANVMSYGEAKLGDNGQKFNFIFDTGSANLWVPSIKCTTEGC--ETKNLYDSSKSKTYEKDG------------- 194 (453)
T ss_pred eeccccCCCEEEEEEEECCCCeEEEEEEeCCCCcEEEeecCCCcccc--cCCCccCCccCcceEECC-------------
Confidence 34446778899999999999999999999999999999999985566 577899999999999887
Q ss_pred CCCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC---CC-CCCcceeeecCCCCCc------
Q 014537 161 CSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS------ 230 (423)
Q Consensus 161 c~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s------ 230 (423)
+.|.+.|++|+. .|.+++|+|+||+. .++ ..|+++.+..+ .+ ....|||||||++..+
T Consensus 195 -----~~f~i~Yg~Gsv-sG~~~~DtVtiG~~-----~v~-~qF~~~~~~~~f~~~~~~~~~DGILGLG~~~~S~~~~~p 262 (453)
T PTZ00147 195 -----TKVEMNYVSGTV-SGFFSKDLVTIGNL-----SVP-YKFIEVTDTNGFEPFYTESDFDGIFGLGWKDLSIGSVDP 262 (453)
T ss_pred -----CEEEEEeCCCCE-EEEEEEEEEEECCE-----EEE-EEEEEEEeccCcccccccccccceecccCCccccccCCC
Confidence 899999999975 59999999999986 777 57888876543 12 3578999999998764
Q ss_pred ----hhhhhhhcccCceEEEeccCCC--ceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEeccCCCcEE
Q 014537 231 ----LISQMRTTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIV 302 (423)
Q Consensus 231 ----l~~ql~~i~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~i 302 (423)
|..| +.+..++||+||.+.+. |.|+||| .+++.|+ +.|+|+. ...+|.|+++ +.+++.. .....+|
T Consensus 263 ~~~~L~~q-g~I~~~vFS~~L~~~~~~~G~L~fGGiD~~ky~G~-l~y~pl~-~~~~W~V~l~-~~vg~~~--~~~~~aI 336 (453)
T PTZ00147 263 YVVELKNQ-NKIEQAVFTFYLPPEDKHKGYLTIGGIEERFYEGP-LTYEKLN-HDLYWQVDLD-VHFGNVS--SEKANVI 336 (453)
T ss_pred HHHHHHHc-CCCCccEEEEEecCCCCCCeEEEECCcChhhcCCc-eEEEEcC-CCceEEEEEE-EEECCEe--cCceeEE
Confidence 2334 56788999999987533 9999999 4566665 9999998 7889999998 5777653 4567899
Q ss_pred EecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeC--CCeE
Q 014537 303 IDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS--EDIV 380 (423)
Q Consensus 303 iDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~--~~~~ 380 (423)
|||||+++++|+++++++.+++.... ... .+.+ +.+|+.. .+|+|+|+|+|..++|+|++|+.+.. ....
T Consensus 337 iDSGTsli~lP~~~~~ai~~~l~~~~-~~~--~~~y-~~~C~~~----~lP~~~f~f~g~~~~L~p~~yi~~~~~~~~~~ 408 (453)
T PTZ00147 337 VDSGTSVITVPTEFLNKFVESLDVFK-VPF--LPLY-VTTCNNT----KLPTLEFRSPNKVYTLEPEYYLQPIEDIGSAL 408 (453)
T ss_pred ECCCCchhcCCHHHHHHHHHHhCCee-cCC--CCeE-EEeCCCC----CCCeEEEEECCEEEEECHHHheeccccCCCcE
Confidence 99999999999999999998885431 111 2223 3359852 58999999999999999999987643 2457
Q ss_pred EEE-EEecC--CCcceechhhhcceEEEEECCCCEEEEeeCC
Q 014537 381 CSV-FKGIT--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 419 (423)
Q Consensus 381 C~~-i~~~~--~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 419 (423)
|++ |++.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 409 C~~~i~~~~~~~~~~ILGd~FLr~~YtVFD~~n~rIGfA~a~ 450 (453)
T PTZ00147 409 CMLNIIPIDLEKNTFILGDPFMRKYFTVFDYDNHTVGFALAK 450 (453)
T ss_pred EEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEec
Confidence 986 87754 4589999999999999999999999999997
No 15
>PTZ00013 plasmepsin 4 (PM4); Provisional
Probab=100.00 E-value=7.8e-53 Score=416.28 Aligned_cols=301 Identities=19% Similarity=0.387 Sum_probs=243.8
Q ss_pred CccceeecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCC
Q 014537 79 ASQADIIPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ 158 (423)
Q Consensus 79 ~~~~~~~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~ 158 (423)
......+..+.+|+++|.||||+|++.|+|||||+++||+|..|....| +.++.|||++|+|++..+
T Consensus 127 ~~~~l~d~~n~~Yy~~i~IGTP~Q~f~vi~DTGSsdlWV~s~~C~~~~C--~~~~~yd~s~SsT~~~~~----------- 193 (450)
T PTZ00013 127 DVIELDDVANIMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCDSIGC--SIKNLYDSSKSKSYEKDG----------- 193 (450)
T ss_pred CceeeeccCCCEEEEEEEECCCCeEEEEEEeCCCCceEEecccCCcccc--ccCCCccCccCcccccCC-----------
Confidence 3344556778899999999999999999999999999999999985567 567899999999999887
Q ss_pred CCCCCCCceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCC---CC-CCCcceeeecCCCCCc----
Q 014537 159 KSCSGVNCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGG---LF-NSKTTGIVGLGGGDIS---- 230 (423)
Q Consensus 159 ~~c~~~~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~---~~-~~~~~GilGLg~~~~s---- 230 (423)
+.+.+.|++|+ +.|.+++|+|+||+. .++ +.|+++..... .+ ....|||||||++..+
T Consensus 194 -------~~~~i~YG~Gs-v~G~~~~Dtv~iG~~-----~~~-~~f~~~~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~~ 259 (450)
T PTZ00013 194 -------TKVDITYGSGT-VKGFFSKDLVTLGHL-----SMP-YKFIEVTDTDDLEPIYSSSEFDGILGLGWKDLSIGSI 259 (450)
T ss_pred -------cEEEEEECCce-EEEEEEEEEEEECCE-----EEc-cEEEEEEeccccccceecccccceecccCCccccccC
Confidence 89999999998 459999999999986 776 57888776532 23 3578999999998664
Q ss_pred --hhhhh---hhcccCceEEEeccCC--CceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEeccCCCcE
Q 014537 231 --LISQM---RTTIAGKFSYCLVPVS--STKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDI 301 (423)
Q Consensus 231 --l~~ql---~~i~~~~Fs~~l~~~~--~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~ 301 (423)
++.+| +.+..++||+||.+.+ .|.|+||| .+++.|+ +.|+|+. ...+|.|+++ +.+|... .....+
T Consensus 260 ~p~~~~L~~qg~I~~~vFS~~L~~~~~~~G~L~fGGiD~~~y~G~-L~y~pv~-~~~yW~I~l~-v~~G~~~--~~~~~a 334 (450)
T PTZ00013 260 DPIVVELKNQNKIDNALFTFYLPVHDVHAGYLTIGGIEEKFYEGN-ITYEKLN-HDLYWQIDLD-VHFGKQT--MQKANV 334 (450)
T ss_pred CCHHHHHHhccCcCCcEEEEEecCCCCCCCEEEECCcCccccccc-eEEEEcC-cCceEEEEEE-EEECcee--ccccce
Confidence 23333 5578899999998653 39999999 4566665 9999998 7889999998 6776543 345779
Q ss_pred EEecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEe--CCCe
Q 014537 302 VIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKV--SEDI 379 (423)
Q Consensus 302 iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~--~~~~ 379 (423)
|+||||+++++|+++++++.+++..... . ..+.+ ..+|+.. .+|+|+|+|+|.+++|+|++|+.+. .++.
T Consensus 335 IlDSGTSli~lP~~~~~~i~~~l~~~~~-~--~~~~y-~~~C~~~----~lP~i~F~~~g~~~~L~p~~Yi~~~~~~~~~ 406 (450)
T PTZ00013 335 IVDSGTTTITAPSEFLNKFFANLNVIKV-P--FLPFY-VTTCDNK----EMPTLEFKSANNTYTLEPEYYMNPLLDVDDT 406 (450)
T ss_pred EECCCCccccCCHHHHHHHHHHhCCeec-C--CCCeE-EeecCCC----CCCeEEEEECCEEEEECHHHheehhccCCCC
Confidence 9999999999999999999888754311 1 12223 3358742 5899999999999999999998753 2356
Q ss_pred EEEE-EEecC--CCcceechhhhcceEEEEECCCCEEEEeeCC
Q 014537 380 VCSV-FKGIT--NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTD 419 (423)
Q Consensus 380 ~C~~-i~~~~--~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~ 419 (423)
.|+. |.+.+ .+.||||++|||++|+|||++++|||||+++
T Consensus 407 ~C~~~i~~~~~~~~~~ILGd~FLr~~Y~VFD~~n~rIGfA~a~ 449 (450)
T PTZ00013 407 LCMITMLPVDIDDNTFILGDPFMRKYFTVFDYDKESVGFAIAK 449 (450)
T ss_pred eeEEEEEECCCCCCCEEECHHHhccEEEEEECCCCEEEEEEeC
Confidence 8986 77654 4579999999999999999999999999986
No 16
>cd05489 xylanase_inhibitor_I_like TAXI-I inhibits degradation of xylan in the cell wall. Xylanase inhibitor-I (TAXI-I) is a member of potent TAXI-type inhibitors of fungal and bacterial family 11 xylanases. Plants developed a diverse battery of defense mechanisms in response to continual challenges by a broad spectrum of pathogenic microorganisms. Their defense arsenal includes inhibitors of cell wall-degrading enzymes, which hinder a possible invasion and colonization by antagonists. Xylanases of fungal and bacterial pathogens are the key enzymes in the degradation of xylan in the cell wall. Plants secrete proteins that inhibit these degradation glycosidases, including xylanase. Surprisingly, TAXI-I displays structural homology with the pepsin-like family of aspartic proteases but is proteolytically nonfunctional, because one or more residues of the essential catalytic triad are absent. The structure of the TAXI-inhibitor, Aspergillus niger xylanase I complex, illustrates the ability
Probab=100.00 E-value=3.3e-51 Score=398.08 Aligned_cols=306 Identities=22% Similarity=0.398 Sum_probs=244.9
Q ss_pred ecCCCce-EEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCC------------CCCCC
Q 014537 97 IGTPPTE-RLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQ------------KSCSG 163 (423)
Q Consensus 97 vGtP~q~-~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~------------~~c~~ 163 (423)
+|||-.+ +.|++||||+++||+|.+ .+|+||+.++|+++.|..... ..|.+
T Consensus 2 ~~~~~~~~~~~~~DTGS~l~WvqC~~----------------~~sst~~~~~C~s~~C~~~~~~~~~~~~~~~~~~~c~~ 65 (362)
T cd05489 2 TITPLKGAVPLVLDLAGPLLWSTCDA----------------GHSSTYQTVPCSSSVCSLANRYHCPGTCGGAPGPGCGN 65 (362)
T ss_pred cccCccCCeeEEEECCCCceeeeCCC----------------CCcCCCCccCcCChhhccccccCCCccccCCCCCCCCC
Confidence 5788777 999999999999997764 347799999999999986542 25655
Q ss_pred CCceeeEE-cCCCCeeeEEEEEEEEEecCCCCCc---eecCceEEEeEEecCC-CCCCCcceeeecCCCCCchhhhhhhc
Q 014537 164 VNCQYSVS-YGDGSFSNGNLATETVTLGSTTGQA---VALPGITFGCGTNNGG-LFNSKTTGIVGLGGGDISLISQMRTT 238 (423)
Q Consensus 164 ~~~~~~~~-Yg~g~~~~G~~~~D~v~ig~~~~~~---~~~~~~~fg~~~~~~~-~~~~~~~GilGLg~~~~sl~~ql~~i 238 (423)
+.|.|... |++|+...|++++|+|+|+..++.. ..++++.|||+..... .+....|||||||++.+|+..||...
T Consensus 66 ~~C~y~~~~y~~gs~t~G~l~~Dtl~~~~~~g~~~~~~~~~~~~FGC~~~~~~~~~~~~~dGIlGLg~~~lSl~sql~~~ 145 (362)
T cd05489 66 NTCTAHPYNPVTGECATGDLTQDVLSANTTDGSNPLLVVIFNFVFSCAPSLLLKGLPPGAQGVAGLGRSPLSLPAQLASA 145 (362)
T ss_pred CcCeeEccccccCcEeeEEEEEEEEEecccCCCCcccceeCCEEEEcCCcccccCCccccccccccCCCccchHHHhhhh
Confidence 56888665 7899888899999999998755432 4789999999988643 23356899999999999999998643
Q ss_pred --ccCceEEEeccCC--CceeeeCCCC--ccC-----CCCeEEeecc-C--CCCceEEEeEEEEeccEEec---------
Q 014537 239 --IAGKFSYCLVPVS--STKINFGTNG--IVS-----GPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG--------- 295 (423)
Q Consensus 239 --~~~~Fs~~l~~~~--~g~l~fGg~~--~~~-----g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~--------- 295 (423)
..++||+||.+.. .|.|+||+.+ .+. ..+++|+|++ + ...+|.|+|++|+||++.+.
T Consensus 146 ~~~~~~FS~CL~~~~~~~g~l~fG~~~~~~~~~~~~~~~~~~~tPl~~~~~~~~~Y~v~l~~IsVg~~~l~~~~~~~~~~ 225 (362)
T cd05489 146 FGVARKFALCLPSSPGGPGVAIFGGGPYYLFPPPIDLSKSLSYTPLLTNPRKSGEYYIGVTSIAVNGHAVPLNPTLSAND 225 (362)
T ss_pred cCCCcceEEEeCCCCCCCeeEEECCCchhcccccccccCCccccccccCCCCCCceEEEEEEEEECCEECCCCchhcccc
Confidence 3589999998753 3999999933 221 1359999999 3 35799999999999999872
Q ss_pred -cCCCcEEEecCCcceecChhHHHHHHHHHHhhhccCcCCCC-CCCcccccccCC------CCCCCeEEEEEeC--cEEE
Q 014537 296 -VSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADP-TGSLELCYSFNS------LSQVPEVTIHFRG--ADVK 365 (423)
Q Consensus 296 -~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~C~~~~~------~~~~P~i~~~f~g--~~~~ 365 (423)
.+..++||||||++++||+++|++|.+++.+++........ ....+.|+.... ...+|+|+|+|+| ++|+
T Consensus 226 ~~~~~g~iiDSGTs~t~lp~~~y~~l~~a~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~P~it~~f~g~g~~~~ 305 (362)
T cd05489 226 RLGPGGVKLSTVVPYTVLRSDIYRAFTQAFAKATARIPRVPAAAVFPELCYPASALGNTRLGYAVPAIDLVLDGGGVNWT 305 (362)
T ss_pred ccCCCcEEEecCCceEEECHHHHHHHHHHHHHHhcccCcCCCCCCCcCccccCCCcCCcccccccceEEEEEeCCCeEEE
Confidence 23468999999999999999999999999987753222111 111257987521 2479999999986 9999
Q ss_pred eCCCceEEEeCCCeEEEEEEecC---CCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 366 LSRSNFFVKVSEDIVCSVFKGIT---NSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 366 l~~~~~~~~~~~~~~C~~i~~~~---~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
|++++|+++..++..|++|.+.+ ...||||+.|||++|++||++++|||||+.
T Consensus 306 l~~~ny~~~~~~~~~Cl~f~~~~~~~~~~~IlG~~~~~~~~vvyD~~~~riGfa~~ 361 (362)
T cd05489 306 IFGANSMVQVKGGVACLAFVDGGSEPRPAVVIGGHQMEDNLLVFDLEKSRLGFSSS 361 (362)
T ss_pred EcCCceEEEcCCCcEEEEEeeCCCCCCceEEEeeheecceEEEEECCCCEeecccC
Confidence 99999999887777899988764 357999999999999999999999999974
No 17
>cd05473 beta_secretase_like Beta-secretase, aspartic-acid protease important in the pathogenesis of Alzheimer's disease. Beta-secretase also called BACE (beta-site of APP cleaving enzyme) or memapsin-2. Beta-secretase is an aspartic-acid protease important in the pathogenesis of Alzheimer's disease, and in the formation of myelin sheaths in peripheral nerve cells. It cleaves amyloid precursor protein (APP) to reveal the N-terminus of the beta-amyloid peptides. The beta-amyloid peptides are the major components of the amyloid plaques formed in the brain of patients with Alzheimer's disease (AD). Since BACE mediates one of the cleavages responsible for generation of AD, it is regarded as a potential target for pharmacological intervention in AD. Beta-secretase is a member of pepsin family of aspartic proteases. Same as other aspartic proteases, beta-secretase is a bilobal enzyme, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two
Probab=100.00 E-value=2.4e-51 Score=401.97 Aligned_cols=303 Identities=24% Similarity=0.407 Sum_probs=233.3
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 014537 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (423)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (423)
.+|+++|.||||+|+|.|+|||||+++||+|..|. ..++.|||++|+||+... |.|
T Consensus 2 ~~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~~~------~~~~~f~~~~SsT~~~~~------------------~~~ 57 (364)
T cd05473 2 QGYYIEMLIGTPPQKLNILVDTGSSNFAVAAAPHP------FIHTYFHRELSSTYRDLG------------------KGV 57 (364)
T ss_pred CceEEEEEecCCCceEEEEEecCCcceEEEcCCCc------cccccCCchhCcCcccCC------------------ceE
Confidence 36999999999999999999999999999998774 346789999999999987 999
Q ss_pred eEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC-C-CCcceeeecCCCCC------------chhhh
Q 014537 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-N-SKTTGIVGLGGGDI------------SLISQ 234 (423)
Q Consensus 169 ~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~-~~~~GilGLg~~~~------------sl~~q 234 (423)
.+.|++|+. .|.+++|+|+|++.... .+ .+.|++..+....+ . ...|||||||++.+ ++++|
T Consensus 58 ~i~Yg~Gs~-~G~~~~D~v~ig~~~~~--~~-~~~~~~~~~~~~~~~~~~~~dGIlGLg~~~l~~~~~~~~~~~~~l~~q 133 (364)
T cd05473 58 TVPYTQGSW-EGELGTDLVSIPKGPNV--TF-RANIAAITESENFFLNGSNWEGILGLAYAELARPDSSVEPFFDSLVKQ 133 (364)
T ss_pred EEEECcceE-EEEEEEEEEEECCCCcc--ce-EEeeEEEeccccceecccccceeeeecccccccCCCCCCCHHHHHHhc
Confidence 999999976 59999999999863110 11 12345655444433 2 36799999999866 35556
Q ss_pred hhhcccCceEEEecc---------C--CCceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEecc-----
Q 014537 235 MRTTIAGKFSYCLVP---------V--SSTKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGV----- 296 (423)
Q Consensus 235 l~~i~~~~Fs~~l~~---------~--~~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~----- 296 (423)
+.+ .++||++|.. . ..|.|+||| ..++.|+ +.|+|+. ...+|.|++++|+|+++.+..
T Consensus 134 -~~~-~~~FS~~l~~~~~~~~~~~~~~~~g~l~fGg~D~~~~~g~-l~~~p~~-~~~~~~v~l~~i~vg~~~~~~~~~~~ 209 (364)
T cd05473 134 -TGI-PDVFSLQMCGAGLPVNGSASGTVGGSMVIGGIDPSLYKGD-IWYTPIR-EEWYYEVIILKLEVGGQSLNLDCKEY 209 (364)
T ss_pred -cCC-ccceEEEecccccccccccccCCCcEEEeCCcCHhhcCCC-ceEEecC-cceeEEEEEEEEEECCEecccccccc
Confidence 333 5799998842 1 129999999 3466665 9999999 778999999999999988731
Q ss_pred CCCcEEEecCCcceecChhHHHHHHHHHHhhhccCcCCCC--CCCcccccccCCC--CCCCeEEEEEeC------cEEEe
Q 014537 297 STPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADP--TGSLELCYSFNSL--SQVPEVTIHFRG------ADVKL 366 (423)
Q Consensus 297 ~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~--~~~~~~C~~~~~~--~~~P~i~~~f~g------~~~~l 366 (423)
....+||||||+++++|++++++|.+++.++......... .....+|+..... ..+|+|+|+|+| .+++|
T Consensus 210 ~~~~~ivDSGTs~~~lp~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~P~i~~~f~g~~~~~~~~l~l 289 (364)
T cd05473 210 NYDKAIVDSGTTNLRLPVKVFNAAVDAIKAASLIEDFPDGFWLGSQLACWQKGTTPWEIFPKISIYLRDENSSQSFRITI 289 (364)
T ss_pred cCccEEEeCCCcceeCCHHHHHHHHHHHHhhcccccCCccccCcceeecccccCchHhhCCcEEEEEccCCCCceEEEEE
Confidence 1247999999999999999999999999886532211111 1112359865321 258999999976 36899
Q ss_pred CCCceEEEeC---CCeEEEEEEec-CCCcceechhhhcceEEEEECCCCEEEEeeCCCCCC
Q 014537 367 SRSNFFVKVS---EDIVCSVFKGI-TNSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDCTKQ 423 (423)
Q Consensus 367 ~~~~~~~~~~---~~~~C~~i~~~-~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c~~~ 423 (423)
+|++|+.... .+..|+++... ..+.||||+.|||++|+|||++++|||||+++|..+
T Consensus 290 ~p~~Y~~~~~~~~~~~~C~~~~~~~~~~~~ILG~~flr~~yvvfD~~~~rIGfa~~~C~~~ 350 (364)
T cd05473 290 LPQLYLRPVEDHGTQLDCYKFAISQSTNGTVIGAVIMEGFYVVFDRANKRVGFAVSTCAEH 350 (364)
T ss_pred CHHHhhhhhccCCCcceeeEEeeecCCCceEEeeeeEcceEEEEECCCCEEeeEecccccc
Confidence 9999987642 24689863322 245799999999999999999999999999999863
No 18
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=100.00 E-value=5.6e-51 Score=383.84 Aligned_cols=257 Identities=32% Similarity=0.581 Sum_probs=218.4
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCC-CCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCce
Q 014537 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE-PCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (423)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~-~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (423)
++|+++|.||||||++.|++||||+++||+|. +|. .| . |.
T Consensus 1 ~~Y~~~i~iGtP~q~~~v~~DTGS~~~Wv~c~~~c~--~c-------------------~------------------c~ 41 (273)
T cd05475 1 GYYYVTINIGNPPKPYFLDIDTGSDLTWLQCDAPCT--GC-------------------Q------------------CD 41 (273)
T ss_pred CceEEEEEcCCCCeeEEEEEccCCCceEEeCCCCCC--CC-------------------c------------------Cc
Confidence 47999999999999999999999999999984 676 55 1 88
Q ss_pred eeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC---CCCcceeeecCCCCCchhhhhhhc--ccCc
Q 014537 168 YSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF---NSKTTGIVGLGGGDISLISQMRTT--IAGK 242 (423)
Q Consensus 168 ~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~---~~~~~GilGLg~~~~sl~~ql~~i--~~~~ 242 (423)
|.+.|+|++.+.|.+++|+|+|+..++. ..++++.|||+......+ ....+||||||++..++++||... .+++
T Consensus 42 ~~i~Ygd~~~~~G~~~~D~v~~~~~~~~-~~~~~~~Fgc~~~~~~~~~~~~~~~dGIlGLg~~~~s~~~ql~~~~~i~~~ 120 (273)
T cd05475 42 YEIEYADGGSSMGVLVTDIFSLKLTNGS-RAKPRIAFGCGYDQQGPLLNPPPPTDGILGLGRGKISLPSQLASQGIIKNV 120 (273)
T ss_pred cEeEeCCCCceEEEEEEEEEEEeecCCC-cccCCEEEEeeeccCCcccCCCccCCEEEECCCCCCCHHHHHHhcCCcCce
Confidence 9999998888889999999999754332 267899999998776533 357899999999999999998532 2789
Q ss_pred eEEEeccCCCceeeeCCCCccCCCCeEEeecc-C-CCCceEEEeEEEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 243 FSYCLVPVSSTKINFGTNGIVSGPGVVSTPLT-K-AKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 243 Fs~~l~~~~~g~l~fGg~~~~~g~~~~~~p~~-~-~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
||+||.+...|.|+||+..++.++ +.|+|+. + ...+|.|++.+|+||++.+......+||||||+++++|+++|
T Consensus 121 Fs~~l~~~~~g~l~~G~~~~~~g~-i~ytpl~~~~~~~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~~y--- 196 (273)
T cd05475 121 IGHCLSSNGGGFLFFGDDLVPSSG-VTWTPMRRESQKKHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQAY--- 196 (273)
T ss_pred EEEEccCCCCeEEEECCCCCCCCC-eeecccccCCCCCeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCccc---
Confidence 999998754599999986555554 9999998 2 258999999999999987655678899999999999999865
Q ss_pred HHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeC----cEEEeCCCceEEEeCCCeEEEEEEecC----CCcc
Q 014537 321 LSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRG----ADVKLSRSNFFVKVSEDIVCSVFKGIT----NSVP 392 (423)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g----~~~~l~~~~~~~~~~~~~~C~~i~~~~----~~~~ 392 (423)
+|+|+|+|++ ++++|++++|++...++..|+++.... ...|
T Consensus 197 -------------------------------~p~i~~~f~~~~~~~~~~l~~~~y~~~~~~~~~Cl~~~~~~~~~~~~~~ 245 (273)
T cd05475 197 -------------------------------FKPLTLKFGKGWRTRLLEIPPENYLIISEKGNVCLGILNGSEIGLGNTN 245 (273)
T ss_pred -------------------------------cccEEEEECCCCceeEEEeCCCceEEEcCCCCEEEEEecCCCcCCCceE
Confidence 4899999987 699999999998766677899965432 3579
Q ss_pred eechhhhcceEEEEECCCCEEEEeeCCC
Q 014537 393 IYGNIMQTNFLVGYDIEQQTVSFKPTDC 420 (423)
Q Consensus 393 ilG~~fl~~~y~vfD~~~~~igfa~~~c 420 (423)
|||+.|||++|++||++++|||||+++|
T Consensus 246 ilG~~~l~~~~~vfD~~~~riGfa~~~C 273 (273)
T cd05475 246 IIGDISMQGLMVIYDNEKQQIGWVRSDC 273 (273)
T ss_pred EECceEEEeeEEEEECcCCEeCcccCCC
Confidence 9999999999999999999999999999
No 19
>cd06097 Aspergillopepsin_like Aspergillopepsin_like, aspartic proteases of fungal origin. The members of this family are aspartic proteases of fungal origin, including aspergillopepsin, rhizopuspepsin, endothiapepsin, and rodosporapepsin. The various fungal species in this family may be the most economically important genus of fungi. They may serve as virulence factors or as industrial aids. For example, Aspergillopepsin from A. fumigatus is involved in invasive aspergillosis owing to its elastolytic activity and Aspergillopepsins from the mold A. saitoi are used in fermentation industry. Aspartic proteinases are a group of proteolytic enzymes in which the scissile peptide bond is attacked by a nucleophilic water molecule activated by two aspartic residues in a DT(S)G motif at the active site. They have a similar fold composed of two beta-barrel domains. Between the N-terminal and C-terminal domains, each of which contributes one catalytic aspartic residue, there is an extended active-
Probab=100.00 E-value=2.6e-49 Score=373.93 Aligned_cols=263 Identities=27% Similarity=0.426 Sum_probs=217.5
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeE
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSV 170 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~ 170 (423)
|+++|+||||+|++.|+|||||+++||+|..|. .|....++.||+++|+|++..+ .+.|.+
T Consensus 1 Y~~~i~vGtP~Q~~~v~~DTGS~~~wv~~~~c~--~~~~~~~~~y~~~~Sst~~~~~-----------------~~~~~i 61 (278)
T cd06097 1 YLTPVKIGTPPQTLNLDLDTGSSDLWVFSSETP--AAQQGGHKLYDPSKSSTAKLLP-----------------GATWSI 61 (278)
T ss_pred CeeeEEECCCCcEEEEEEeCCCCceeEeeCCCC--chhhccCCcCCCccCccceecC-----------------CcEEEE
Confidence 899999999999999999999999999999998 7766678889999999998753 189999
Q ss_pred EcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCC-C-CCCcceeeecCCCCCch---------hhhhhh-c
Q 014537 171 SYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDISL---------ISQMRT-T 238 (423)
Q Consensus 171 ~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~sl---------~~ql~~-i 238 (423)
.|++|+.+.|.+++|+|+|++. .++++.||+++..... + ....+||||||++..+. .++|.. .
T Consensus 62 ~Y~~G~~~~G~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~dGilGLg~~~~~~~~~~~~~~~~~~l~~~~ 136 (278)
T cd06097 62 SYGDGSSASGIVYTDTVSIGGV-----EVPNQAIELATAVSASFFSDTASDGLLGLAFSSINTVQPPKQKTFFENALSSL 136 (278)
T ss_pred EeCCCCeEEEEEEEEEEEECCE-----EECCeEEEEEeecCccccccccccceeeeccccccccccCCCCCHHHHHHHhc
Confidence 9999987779999999999987 8999999999987763 3 46899999999986643 222211 1
Q ss_pred ccCceEEEeccCCCceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccEEe-ccCCCcEEEecCCcceecChh
Q 014537 239 IAGKFSYCLVPVSSTKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRL-GVSTPDIVIDSGTTLTFLPQG 315 (423)
Q Consensus 239 ~~~~Fs~~l~~~~~g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~-~~~~~~~iiDsGt~~~~lp~~ 315 (423)
..+.||++|.+...|+|+||| ..++.|+ +.|+|+.+...+|.|++++|+|+++.. ......++|||||+++++|++
T Consensus 137 ~~~~Fs~~l~~~~~G~l~fGg~D~~~~~g~-l~~~pi~~~~~~w~v~l~~i~v~~~~~~~~~~~~~iiDSGTs~~~lP~~ 215 (278)
T cd06097 137 DAPLFTADLRKAAPGFYTFGYIDESKYKGE-ISWTPVDNSSGFWQFTSTSYTVGGDAPWSRSGFSAIADTGTTLILLPDA 215 (278)
T ss_pred cCceEEEEecCCCCcEEEEeccChHHcCCc-eEEEEccCCCcEEEEEEeeEEECCcceeecCCceEEeecCCchhcCCHH
Confidence 258999999875459999999 4466665 999999822789999999999999843 456788999999999999999
Q ss_pred HHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEEEEecCCCcceec
Q 014537 316 YNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYG 395 (423)
Q Consensus 316 ~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG 395 (423)
++++|.+++.+..... ..+.+.+ +|.. .+|+|+|+| .||||
T Consensus 216 ~~~~l~~~l~g~~~~~--~~~~~~~-~C~~-----~~P~i~f~~-------------------------------~~ilG 256 (278)
T cd06097 216 IVEAYYSQVPGAYYDS--EYGGWVF-PCDT-----TLPDLSFAV-------------------------------FSILG 256 (278)
T ss_pred HHHHHHHhCcCCcccC--CCCEEEE-ECCC-----CCCCEEEEE-------------------------------EEEEc
Confidence 9999988884321111 1223334 3763 489999999 69999
Q ss_pred hhhhcceEEEEECCCCEEEEee
Q 014537 396 NIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 396 ~~fl~~~y~vfD~~~~~igfa~ 417 (423)
++|||++|+|||++++|||||+
T Consensus 257 d~fl~~~y~vfD~~~~~ig~A~ 278 (278)
T cd06097 257 DVFLKAQYVVFDVGGPKLGFAP 278 (278)
T ss_pred chhhCceeEEEcCCCceeeecC
Confidence 9999999999999999999996
No 20
>cd05476 pepsin_A_like_plant Chroloplast Nucleoids DNA-binding Protease and Nucellin, pepsin-like aspartic proteases from plants. This family contains pepsin like aspartic proteases from plants including Chloroplast Nucleoids DNA-binding Protease and Nucellin. Chloroplast Nucleoids DNA-binding Protease catalyzes the degradation of ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco) in senescent leaves of tobacco and Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The enzymes specifically cleave bonds in peptides which
Probab=100.00 E-value=9.8e-49 Score=367.27 Aligned_cols=244 Identities=49% Similarity=0.888 Sum_probs=212.6
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 014537 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (423)
Q Consensus 90 ~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (423)
+|+++|+||||+|++.|+|||||+++||+| |.|.
T Consensus 1 ~Y~~~i~iGtP~q~~~v~~DTGSs~~wv~~----------------------------------------------~~~~ 34 (265)
T cd05476 1 EYLVTLSIGTPPQPFSLIVDTGSDLTWTQC----------------------------------------------CSYE 34 (265)
T ss_pred CeEEEEecCCCCcceEEEecCCCCCEEEcC----------------------------------------------CceE
Confidence 699999999999999999999999999954 3467
Q ss_pred EEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC-CCCcceeeecCCCCCchhhhhhhcccCceEEEec
Q 014537 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDISLISQMRTTIAGKFSYCLV 248 (423)
Q Consensus 170 ~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~l~ 248 (423)
+.|+||+...|.+++|+|+|++.+ ..++++.|||+..... + ....+||||||+...++++||.... ++||+||.
T Consensus 35 ~~Y~dg~~~~G~~~~D~v~~g~~~---~~~~~~~Fg~~~~~~~-~~~~~~~GIlGLg~~~~s~~~ql~~~~-~~Fs~~l~ 109 (265)
T cd05476 35 YSYGDGSSTSGVLATETFTFGDSS---VSVPNVAFGCGTDNEG-GSFGGADGILGLGRGPLSLVSQLGSTG-NKFSYCLV 109 (265)
T ss_pred eEeCCCceeeeeEEEEEEEecCCC---CccCCEEEEecccccC-CccCCCCEEEECCCCcccHHHHhhccc-CeeEEEcc
Confidence 899999888899999999999852 2578999999998876 4 5788999999999999999986544 89999998
Q ss_pred cCC----CceeeeCC-CCccCCCCeEEeecc-C--CCCceEEEeEEEEeccEEec----------cCCCcEEEecCCcce
Q 014537 249 PVS----STKINFGT-NGIVSGPGVVSTPLT-K--AKTFYVLTIDAISVGNQRLG----------VSTPDIVIDSGTTLT 310 (423)
Q Consensus 249 ~~~----~g~l~fGg-~~~~~g~~~~~~p~~-~--~~~~w~v~l~~i~v~~~~~~----------~~~~~~iiDsGt~~~ 310 (423)
+.. .|+|+||+ +..+.+ ++.|+|+. + ...+|.|++++|+|+++.+. .....+||||||+++
T Consensus 110 ~~~~~~~~G~l~fGg~d~~~~~-~l~~~p~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~~~~~~ai~DTGTs~~ 188 (265)
T cd05476 110 PHDDTGGSSPLILGDAADLGGS-GVVYTPLVKNPANPTYYYVNLEGISVGGKRLPIPPSVFAIDSDGSGGTIIDSGTTLT 188 (265)
T ss_pred CCCCCCCCCeEEECCcccccCC-CceEeecccCCCCCCceEeeeEEEEECCEEecCCchhcccccCCCCcEEEeCCCcce
Confidence 741 29999999 333444 59999999 2 36899999999999998762 356789999999999
Q ss_pred ecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEe-CcEEEeCCCceEEEeCCCeEEEEEEec-C
Q 014537 311 FLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI-T 388 (423)
Q Consensus 311 ~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~-~ 388 (423)
++|++++ |+|+|+|+ |+++.+++++|+++..++..|+++... .
T Consensus 189 ~lp~~~~-----------------------------------P~i~~~f~~~~~~~i~~~~y~~~~~~~~~C~~~~~~~~ 233 (265)
T cd05476 189 YLPDPAY-----------------------------------PDLTLHFDGGADLELPPENYFVDVGEGVVCLAILSSSS 233 (265)
T ss_pred EcCcccc-----------------------------------CCEEEEECCCCEEEeCcccEEEECCCCCEEEEEecCCC
Confidence 9999876 78999999 899999999999977667899997765 4
Q ss_pred CCcceechhhhcceEEEEECCCCEEEEeeCCC
Q 014537 389 NSVPIYGNIMQTNFLVGYDIEQQTVSFKPTDC 420 (423)
Q Consensus 389 ~~~~ilG~~fl~~~y~vfD~~~~~igfa~~~c 420 (423)
...||||++|||++|++||++++|||||+++|
T Consensus 234 ~~~~ilG~~fl~~~~~vFD~~~~~iGfa~~~C 265 (265)
T cd05476 234 GGVSILGNIQQQNFLVEYDLENSRLGFAPADC 265 (265)
T ss_pred CCcEEEChhhcccEEEEEECCCCEEeeecCCC
Confidence 67899999999999999999999999999999
No 21
>PF00026 Asp: Eukaryotic aspartyl protease The Prosite entry also includes Pfam:PF00077.; InterPro: IPR001461 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to MEROPS peptidase family A1 (pepsin family, clan AA). The type example is pepsin A from Homo sapiens (Human) . More than 70 aspartic peptidases, from all from eukaryotic organisms, have been identified. These include pepsins, cathepsins, and renins. The enzymes are synthesised with signal peptides, and the proenzymes are secreted or passed into the lysosomal/endosomal system, where acidification leads to autocatalytic activation. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residues in both the P1 and P1' positions []. Crystallography has shown the active site to form a groove across the junction of the two lobes, with an extended loop projecting over the cleft to form an 11-residue flap, which encloses substrates and inhibitors within the active site []. Specificity is determined by several hydrophobic residues surrounding the catalytic aspartates, and by three residues in the flap. Cysteine residues are well conserved within the pepsin family, pepsin itself containing three disulphide loops. The first loop is found in all but the fungal enzymes, and is usually around five residues in length, but is longer in barrierpepsin and candidapepsin; the second loop is also small and found only in the animal enzymes; and the third loop is the largest, found in all members of the family, except for the cysteine-free polyporopepsin. The loops are spread unequally throughout the two lobes, suggesting that they formed after the initial gene duplication and fusion event []. This family does not include the retroviral nor retrotransposon aspartic proteases which are much smaller and appear to be homologous to the single domain aspartic proteases.; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 1CZI_E 3CMS_A 1CMS_A 4CMS_A 1YG9_A 2NR6_A 3LIZ_A 1FLH_A 3UTL_A 1QRP_E ....
Probab=100.00 E-value=2.6e-49 Score=381.27 Aligned_cols=292 Identities=28% Similarity=0.546 Sum_probs=247.1
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCC-CCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 014537 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQC-YMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (423)
Q Consensus 90 ~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C-~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (423)
+|+++|.||||+|+++|++||||+++||++..|. .| .......|++++|+|++... +.+
T Consensus 1 ~Y~~~v~iGtp~q~~~~~iDTGS~~~wv~~~~c~--~~~~~~~~~~y~~~~S~t~~~~~------------------~~~ 60 (317)
T PF00026_consen 1 QYYINVTIGTPPQTFRVLIDTGSSDTWVPSSNCN--SCSSCASSGFYNPSKSSTFSNQG------------------KPF 60 (317)
T ss_dssp EEEEEEEETTTTEEEEEEEETTBSSEEEEBTTEC--SHTHHCTSC-BBGGGSTTEEEEE------------------EEE
T ss_pred CeEEEEEECCCCeEEEEEEecccceeeeceeccc--cccccccccccccccccccccce------------------eee
Confidence 5999999999999999999999999999999998 44 33567899999999999887 889
Q ss_pred eEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCC-C-CCCcceeeecCCCCC-------chhhhh---h
Q 014537 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGL-F-NSKTTGIVGLGGGDI-------SLISQM---R 236 (423)
Q Consensus 169 ~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~-~-~~~~~GilGLg~~~~-------sl~~ql---~ 236 (423)
.+.|++|+ ++|.+++|+|+|++. .++++.||++....+. + ....+||||||++.. +++.+| +
T Consensus 61 ~~~y~~g~-~~G~~~~D~v~ig~~-----~~~~~~f~~~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~~~~~~~l~~~g 134 (317)
T PF00026_consen 61 SISYGDGS-VSGNLVSDTVSIGGL-----TIPNQTFGLADSYSGDPFSPIPFDGILGLGFPSLSSSSTYPTFLDQLVQQG 134 (317)
T ss_dssp EEEETTEE-EEEEEEEEEEEETTE-----EEEEEEEEEEEEEESHHHHHSSSSEEEE-SSGGGSGGGTS-SHHHHHHHTT
T ss_pred eeeccCcc-cccccccceEeeeec-----cccccceeccccccccccccccccccccccCCcccccccCCcceecchhhc
Confidence 99999999 779999999999997 8899999999996553 2 578899999997532 344444 5
Q ss_pred hcccCceEEEeccCCC--ceeeeCC--CCccCCCCeEEeeccCCCCceEEEeEEEEeccE-EeccCCCcEEEecCCccee
Q 014537 237 TTIAGKFSYCLVPVSS--TKINFGT--NGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQ-RLGVSTPDIVIDSGTTLTF 311 (423)
Q Consensus 237 ~i~~~~Fs~~l~~~~~--g~l~fGg--~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~-~~~~~~~~~iiDsGt~~~~ 311 (423)
.|.+++||++|.+... |.|+||| .+++.|+ +.|+|+. ...+|.+.+++|.++++ ........++||||+++++
T Consensus 135 ~i~~~~fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~~~~-~~~~w~v~~~~i~i~~~~~~~~~~~~~~~Dtgt~~i~ 212 (317)
T PF00026_consen 135 LISSNVFSLYLNPSDSQNGSLTFGGYDPSKYDGD-LVWVPLV-SSGYWSVPLDSISIGGESVFSSSGQQAILDTGTSYIY 212 (317)
T ss_dssp SSSSSEEEEEEESTTSSEEEEEESSEEGGGEESE-EEEEEBS-STTTTEEEEEEEEETTEEEEEEEEEEEEEETTBSSEE
T ss_pred cccccccceeeeecccccchheeeccccccccCc-eeccCcc-cccccccccccccccccccccccceeeeccccccccc
Confidence 6788999999998863 9999999 5566665 9999999 89999999999999999 3344557799999999999
Q ss_pred cChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCC--eEEEE-EEe--
Q 014537 312 LPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSED--IVCSV-FKG-- 386 (423)
Q Consensus 312 lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~--~~C~~-i~~-- 386 (423)
+|.+++++|++++...... +.+.+ +|.... .+|.|+|+|++.+++|++++|+.+.... ..|+. |..
T Consensus 213 lp~~~~~~i~~~l~~~~~~-----~~~~~-~c~~~~---~~p~l~f~~~~~~~~i~~~~~~~~~~~~~~~~C~~~i~~~~ 283 (317)
T PF00026_consen 213 LPRSIFDAIIKALGGSYSD-----GVYSV-PCNSTD---SLPDLTFTFGGVTFTIPPSDYIFKIEDGNGGYCYLGIQPMD 283 (317)
T ss_dssp EEHHHHHHHHHHHTTEEEC-----SEEEE-ETTGGG---GSEEEEEEETTEEEEEEHHHHEEEESSTTSSEEEESEEEES
T ss_pred ccchhhHHHHhhhcccccc-----eeEEE-eccccc---ccceEEEeeCCEEEEecchHhcccccccccceeEeeeeccc
Confidence 9999999999999765432 33334 487654 5899999999999999999999987653 48988 877
Q ss_pred --cCCCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 387 --ITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 387 --~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
.....+|||.+|||++|++||++++|||||+|
T Consensus 284 ~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~A~a 317 (317)
T PF00026_consen 284 SSDDSDDWILGSPFLRNYYVVFDYENNRIGFAQA 317 (317)
T ss_dssp STTSSSEEEEEHHHHTTEEEEEETTTTEEEEEEE
T ss_pred ccccCCceEecHHHhhceEEEEeCCCCEEEEecC
Confidence 23678999999999999999999999999986
No 22
>cd05474 SAP_like SAPs, pepsin-like proteinases secreted from pathogens to degrade host proteins. SAPs (Secreted aspartic proteinases) are secreted from a group of pathogenic fungi, predominantly Candida species. They are secreted from the pathogen to degrade host proteins. SAP is one of the most significant extracellular hydrolytic enzymes produced by C. albicans. SAP proteins, encoded by a family of 10 SAP genes. All 10 SAP genes of C. albicans encode preproenzymes, approximately 60 amino acid longer than the mature enzyme, which are processed when transported via the secretory pathway. The mature enzymes contain sequence motifs typical for all aspartyl proteinases, including the two conserved aspartate residues other active site and conserved cysteine residues implicated in the maintenance of the three-dimensional structure. Most Sap proteins contain putative N-glycosylation sites, but it remains to be determined which Sap proteins are glycosylated. This family of aspartate proteases
Probab=100.00 E-value=6.1e-47 Score=361.11 Aligned_cols=262 Identities=25% Similarity=0.440 Sum_probs=221.1
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 014537 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (423)
Q Consensus 90 ~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (423)
.|+++|.||||+|++.|++||||+++||+ .|.
T Consensus 2 ~Y~~~i~iGtp~q~~~v~~DTgS~~~wv~------------------------------------------------~~~ 33 (295)
T cd05474 2 YYSAELSVGTPPQKVTVLLDTGSSDLWVP------------------------------------------------DFS 33 (295)
T ss_pred eEEEEEEECCCCcEEEEEEeCCCCcceee------------------------------------------------eeE
Confidence 59999999999999999999999999994 257
Q ss_pred EEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCCCCC-----------chhhhhh--
Q 014537 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDI-----------SLISQMR-- 236 (423)
Q Consensus 170 ~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~-----------sl~~ql~-- 236 (423)
+.|++|+.+.|.+++|+|+|++. .++++.|||+.+. ...+||||||++.. +++.||.
T Consensus 34 ~~Y~~g~~~~G~~~~D~v~~g~~-----~~~~~~fg~~~~~-----~~~~GilGLg~~~~~~~~~~~~~~~s~~~~L~~~ 103 (295)
T cd05474 34 ISYGDGTSASGTWGTDTVSIGGA-----TVKNLQFAVANST-----SSDVGVLGIGLPGNEATYGTGYTYPNFPIALKKQ 103 (295)
T ss_pred EEeccCCcEEEEEEEEEEEECCe-----EecceEEEEEecC-----CCCcceeeECCCCCcccccCCCcCCCHHHHHHHC
Confidence 88999877779999999999987 8899999999984 35689999999876 5667664
Q ss_pred -hcccCceEEEeccCC--CceeeeCC--CCccCCCCeEEeecc-CC----CCceEEEeEEEEeccEEe----ccCCCcEE
Q 014537 237 -TTIAGKFSYCLVPVS--STKINFGT--NGIVSGPGVVSTPLT-KA----KTFYVLTIDAISVGNQRL----GVSTPDIV 302 (423)
Q Consensus 237 -~i~~~~Fs~~l~~~~--~g~l~fGg--~~~~~g~~~~~~p~~-~~----~~~w~v~l~~i~v~~~~~----~~~~~~~i 302 (423)
.+.++.||+||.+.. .|.|+||| .+++.++ +.|+|+. +. ..+|.|++++|+++++.+ ......++
T Consensus 104 g~i~~~~Fsl~l~~~~~~~g~l~~Gg~d~~~~~g~-~~~~p~~~~~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~~~i 182 (295)
T cd05474 104 GLIKKNAYSLYLNDLDASTGSILFGGVDTAKYSGD-LVTLPIVNDNGGSEPSELSVTLSSISVNGSSGNTTLLSKNLPAL 182 (295)
T ss_pred CcccceEEEEEeCCCCCCceeEEEeeeccceeece-eEEEeCcCcCCCCCceEEEEEEEEEEEEcCCCcccccCCCccEE
Confidence 467899999999853 39999999 4566665 9999999 32 279999999999999874 35668999
Q ss_pred EecCCcceecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeC----CC
Q 014537 303 IDSGTTLTFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS----ED 378 (423)
Q Consensus 303 iDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~----~~ 378 (423)
|||||+++++|++++++|++++.+..... ...+. .+|+... . |+|+|+|+|++++||+++|+++.. .+
T Consensus 183 iDSGt~~~~lP~~~~~~l~~~~~~~~~~~---~~~~~-~~C~~~~---~-p~i~f~f~g~~~~i~~~~~~~~~~~~~~~~ 254 (295)
T cd05474 183 LDSGTTLTYLPSDIVDAIAKQLGATYDSD---EGLYV-VDCDAKD---D-GSLTFNFGGATISVPLSDLVLPASTDDGGD 254 (295)
T ss_pred ECCCCccEeCCHHHHHHHHHHhCCEEcCC---CcEEE-EeCCCCC---C-CEEEEEECCeEEEEEHHHhEeccccCCCCC
Confidence 99999999999999999999997654322 23333 3598754 3 999999999999999999998764 25
Q ss_pred eEEE-EEEecCCCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 379 IVCS-VFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 379 ~~C~-~i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
..|+ +|.+.+...||||++|||++|++||++++|||||++
T Consensus 255 ~~C~~~i~~~~~~~~iLG~~fl~~~y~vfD~~~~~ig~a~a 295 (295)
T cd05474 255 GACYLGIQPSTSDYNILGDTFLRSAYVVYDLDNNEISLAQA 295 (295)
T ss_pred CCeEEEEEeCCCCcEEeChHHhhcEEEEEECCCCEEEeecC
Confidence 6786 488775578999999999999999999999999986
No 23
>cd05471 pepsin_like Pepsin-like aspartic proteases, bilobal enzymes that cleave bonds in peptides at acidic pH. Pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, renin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (renin, cathepsin D and E, pepsin) or commercially (chymosin) important. Structurally, aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Aspartate residue, with an extended active site cleft localized between the two lobes of the molecule. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. Most members of the pepsin family specifically cleave bonds in peptides that are at least six residues in length, with hydrophobic residu
Probab=100.00 E-value=2.4e-44 Score=340.92 Aligned_cols=262 Identities=32% Similarity=0.643 Sum_probs=219.0
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCC--CCCCCCCcccccCCCCccccCCCCCCCCCCCcee
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPL--FDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQY 168 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~--y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~ 168 (423)
|+++|.||||+|++.|++||||+++||+|..|. .|..+.... |++..|+++.... |.+
T Consensus 1 Y~~~i~iGtp~q~~~l~~DTGS~~~wv~~~~c~--~~~~~~~~~~~~~~~~s~~~~~~~------------------~~~ 60 (283)
T cd05471 1 YYGEITIGTPPQKFSVIFDTGSSLLWVPSSNCT--SCSCQKHPRFKYDSSKSSTYKDTG------------------CTF 60 (283)
T ss_pred CEEEEEECCCCcEEEEEEeCCCCCEEEecCCCC--ccccccCCCCccCccCCceeecCC------------------CEE
Confidence 789999999999999999999999999999998 564444444 7888888887765 999
Q ss_pred eEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC-CCCcceeeecCCCC------Cchhhhhhh---c
Q 014537 169 SVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGD------ISLISQMRT---T 238 (423)
Q Consensus 169 ~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~------~sl~~ql~~---i 238 (423)
.+.|++|+.. |.+++|+|+|++. .++++.|||+......+ ....+||||||+.. .++++||.. +
T Consensus 61 ~~~Y~~g~~~-g~~~~D~v~~~~~-----~~~~~~fg~~~~~~~~~~~~~~~GilGLg~~~~~~~~~~s~~~~l~~~~~i 134 (283)
T cd05471 61 SITYGDGSVT-GGLGTDTVTIGGL-----TIPNQTFGCATSESGDFSSSGFDGILGLGFPSLSVDGVPSFFDQLKSQGLI 134 (283)
T ss_pred EEEECCCeEE-EEEEEeEEEECCE-----EEeceEEEEEeccCCcccccccceEeecCCcccccccCCCHHHHHHHCCCC
Confidence 9999998665 9999999999997 78999999999987644 57899999999988 678877754 5
Q ss_pred ccCceEEEeccC----CCceeeeCCC--CccCCCCeEEeeccC-CCCceEEEeEEEEeccE--EeccCCCcEEEecCCcc
Q 014537 239 IAGKFSYCLVPV----SSTKINFGTN--GIVSGPGVVSTPLTK-AKTFYVLTIDAISVGNQ--RLGVSTPDIVIDSGTTL 309 (423)
Q Consensus 239 ~~~~Fs~~l~~~----~~g~l~fGg~--~~~~g~~~~~~p~~~-~~~~w~v~l~~i~v~~~--~~~~~~~~~iiDsGt~~ 309 (423)
.+++||+||.+. ..|.|+|||. .++.+ ++.|+|+.. ...+|.|.+++|+++++ ........++|||||++
T Consensus 135 ~~~~Fs~~l~~~~~~~~~g~l~~Gg~d~~~~~~-~~~~~p~~~~~~~~~~v~l~~i~v~~~~~~~~~~~~~~iiDsGt~~ 213 (283)
T cd05471 135 SSPVFSFYLGRDGDGGNGGELTFGGIDPSKYTG-DLTYTPVVSNGPGYWQVPLDGISVGGKSVISSSGGGGAIVDSGTSL 213 (283)
T ss_pred CCCEEEEEEcCCCCCCCCCEEEEcccCccccCC-ceEEEecCCCCCCEEEEEeCeEEECCceeeecCCCcEEEEecCCCC
Confidence 789999999985 3399999992 33444 499999992 28899999999999997 33567889999999999
Q ss_pred eecChhHHHHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeCCCeEEEEEEecCC
Q 014537 310 TFLPQGYNSNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVSEDIVCSVFKGITN 389 (423)
Q Consensus 310 ~~lp~~~~~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~~~~~C~~i~~~~~ 389 (423)
++||++++++|++++.+..... ...+.. .|.... .+|+|+|+|
T Consensus 214 ~~lp~~~~~~l~~~~~~~~~~~---~~~~~~-~~~~~~---~~p~i~f~f------------------------------ 256 (283)
T cd05471 214 IYLPSSVYDAILKALGAAVSSS---DGGYGV-DCSPCD---TLPDITFTF------------------------------ 256 (283)
T ss_pred EeCCHHHHHHHHHHhCCccccc---CCcEEE-eCcccC---cCCCEEEEE------------------------------
Confidence 9999999999999998765431 112212 244333 789999999
Q ss_pred CcceechhhhcceEEEEECCCCEEEEee
Q 014537 390 SVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 390 ~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
.+|||++|||++|++||+++++||||+
T Consensus 257 -~~ilG~~fl~~~y~vfD~~~~~igfa~ 283 (283)
T cd05471 257 -LWILGDVFLRNYYTVFDLDNNRIGFAP 283 (283)
T ss_pred -EEEccHhhhhheEEEEeCCCCEEeecC
Confidence 689999999999999999999999986
No 24
>PF14543 TAXi_N: Xylanase inhibitor N-terminal; PDB: 3HD8_A 3VLB_A 3VLA_A 3AUP_D 1T6G_A 1T6E_X 2B42_A.
Probab=99.97 E-value=4.3e-30 Score=222.40 Aligned_cols=157 Identities=50% Similarity=0.914 Sum_probs=128.6
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCC--CCC--CCCc
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQK--SCS--GVNC 166 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~--~c~--~~~~ 166 (423)
|+++|.||||+|++.|++||||+++|++| ..+.|+|++|+||+.++|.++.|...... .|. +..|
T Consensus 1 Y~~~~~iGtP~~~~~lvvDtgs~l~W~~C-----------~~~~f~~~~Sst~~~v~C~s~~C~~~~~~~~~~~~~~~~C 69 (164)
T PF14543_consen 1 YYVSVSIGTPPQPFSLVVDTGSDLTWVQC-----------PDPPFDPSKSSTYRPVPCSSPQCSSAPSFCPCCCCSNNSC 69 (164)
T ss_dssp EEEEEECTCTTEEEEEEEETT-SSEEEET---------------STT-TTSSBEC-BTTSHHHHHCTSSBTCCTCESSEE
T ss_pred CEEEEEeCCCCceEEEEEECCCCceEEcC-----------CCcccCCccCCcccccCCCCcchhhcccccccCCCCcCcc
Confidence 89999999999999999999999999977 35789999999999999999999976632 333 3389
Q ss_pred eeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCCCCCchhhhhhhcccCceEEE
Q 014537 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGGGDISLISQMRTTIAGKFSYC 246 (423)
Q Consensus 167 ~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~~~~sl~~ql~~i~~~~Fs~~ 246 (423)
.|.+.|++++...|.+++|+|+++..++....+.++.|||+....+.+ ...+||||||+.++||++||+....++||||
T Consensus 70 ~y~~~y~~~s~~~G~l~~D~~~~~~~~~~~~~~~~~~FGC~~~~~g~~-~~~~GilGLg~~~~Sl~sQl~~~~~~~FSyC 148 (164)
T PF14543_consen 70 PYSQSYGDGSSSSGFLASDTLTFGSSSGGSNSVPDFIFGCATSNSGLF-YGADGILGLGRGPLSLPSQLASSSGNKFSYC 148 (164)
T ss_dssp EEEEEETTTEEEEEEEEEEEEEEEEESSSSEEEEEEEEEEE-GGGTSS-TTEEEEEE-SSSTTSHHHHHHHH--SEEEEE
T ss_pred cceeecCCCccccCceEEEEEEecCCCCCCceeeeEEEEeeeccccCC-cCCCcccccCCCcccHHHHHHHhcCCeEEEE
Confidence 999999999999999999999999876555678899999999998655 5899999999999999999977788999999
Q ss_pred ecc-CCC--ceeeeCC
Q 014537 247 LVP-VSS--TKINFGT 259 (423)
Q Consensus 247 l~~-~~~--g~l~fGg 259 (423)
|.+ ... |.|+||+
T Consensus 149 L~~~~~~~~g~l~fG~ 164 (164)
T PF14543_consen 149 LPSSSPSSSGFLSFGD 164 (164)
T ss_dssp B-S-SSSSEEEEEECS
T ss_pred CCCCCCCCCEEEEeCc
Confidence 999 222 9999996
No 25
>PF14541 TAXi_C: Xylanase inhibitor C-terminal; PDB: 3AUP_D 3HD8_A 1T6G_A 1T6E_X 2B42_A 3VLB_A 3VLA_A.
Probab=99.91 E-value=4.9e-24 Score=184.41 Aligned_cols=139 Identities=37% Similarity=0.702 Sum_probs=113.5
Q ss_pred ceEEEeEEEEeccEEec---------cCCCcEEEecCCcceecChhHHHHHHHHHHhhhccCcC---CCCCCCccccccc
Q 014537 279 FYVLTIDAISVGNQRLG---------VSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQPV---ADPTGSLELCYSF 346 (423)
Q Consensus 279 ~w~v~l~~i~v~~~~~~---------~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~~~---~~~~~~~~~C~~~ 346 (423)
+|.|+|.+|+||++++. ....++||||||++++||+++|+++++++.+++..... ......++.||+.
T Consensus 1 ~Y~v~l~~Isvg~~~l~~~~~~~~~~~~~g~~iiDSGT~~T~L~~~~y~~l~~al~~~~~~~~~~~~~~~~~~~~~Cy~~ 80 (161)
T PF14541_consen 1 FYYVNLTGISVGGKRLPIPPSVFQLSDGSGGTIIDSGTTYTYLPPPVYDALVQALDAQMGAPGVSREAPPFSGFDLCYNL 80 (161)
T ss_dssp SEEEEEEEEEETTEEE---TTCSCETTSTCSEEE-SSSSSEEEEHHHHHHHHHHHHHHHHTCT--CEE---TT-S-EEEG
T ss_pred CccEEEEEEEECCEEecCChHHhhccCCCCCEEEECCCCccCCcHHHHHHHHHHHHHHhhhcccccccccCCCCCceeec
Confidence 58999999999999981 24688999999999999999999999999998865431 1334556789999
Q ss_pred CC------CCCCCeEEEEEe-CcEEEeCCCceEEEeCCCeEEEEEEec---CCCcceechhhhcceEEEEECCCCEEEEe
Q 014537 347 NS------LSQVPEVTIHFR-GADVKLSRSNFFVKVSEDIVCSVFKGI---TNSVPIYGNIMQTNFLVGYDIEQQTVSFK 416 (423)
Q Consensus 347 ~~------~~~~P~i~~~f~-g~~~~l~~~~~~~~~~~~~~C~~i~~~---~~~~~ilG~~fl~~~y~vfD~~~~~igfa 416 (423)
.. ...+|+|+|+|. |++++|++++|++...++..|++|.++ +.+..|||..+|++++++||++++||||+
T Consensus 81 ~~~~~~~~~~~~P~i~l~F~~ga~l~l~~~~y~~~~~~~~~Cla~~~~~~~~~~~~viG~~~~~~~~v~fDl~~~~igF~ 160 (161)
T PF14541_consen 81 SSFGVNRDWAKFPTITLHFEGGADLTLPPENYFVQVSPGVFCLAFVPSDADDDGVSVIGNFQQQNYHVVFDLENGRIGFA 160 (161)
T ss_dssp GCS-EETTEESS--EEEEETTSEEEEE-HHHHEEEECTTEEEESEEEETSTTSSSEEE-HHHCCTEEEEEETTTTEEEEE
T ss_pred cccccccccccCCeEEEEEeCCcceeeeccceeeeccCCCEEEEEEccCCCCCCcEEECHHHhcCcEEEEECCCCEEEEe
Confidence 76 247999999999 699999999999999888999998887 47899999999999999999999999999
Q ss_pred e
Q 014537 417 P 417 (423)
Q Consensus 417 ~ 417 (423)
|
T Consensus 161 ~ 161 (161)
T PF14541_consen 161 P 161 (161)
T ss_dssp E
T ss_pred C
Confidence 7
No 26
>cd05470 pepsin_retropepsin_like Cellular and retroviral pepsin-like aspartate proteases. This family includes both cellular and retroviral pepsin-like aspartate proteases. The cellular pepsin and pepsin-like enzymes are twice as long as their retroviral counterparts. The cellular pepsin-like aspartic proteases are found in mammals, plants, fungi and bacteria. These well known and extensively characterized enzymes include pepsins, chymosin, rennin, cathepsins, and fungal aspartic proteases. Several have long been known to be medically (rennin, cathepsin D and E, pepsin) or commercially (chymosin) important. The eukaryotic pepsin-like proteases contain two domains possessing similar topological features. The N- and C-terminal domains, although structurally related by a 2-fold axis, have only limited sequence homology except in the vicinity of the active site. This suggests that the enzymes evolved by an ancient duplication event. The eukaryotic pepsin-like proteases have two active site
Probab=99.91 E-value=6.6e-24 Score=171.49 Aligned_cols=106 Identities=40% Similarity=0.741 Sum_probs=94.2
Q ss_pred EEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCC-CCCCCCcccccCCCCccccCCCCCCCCCCCceeeEE
Q 014537 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLF-DPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVS 171 (423)
Q Consensus 93 ~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y-~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~ 171 (423)
++|.||||+|++.|+|||||+++||+|+.|. .|..+.++.| ||+.|++++... |.|.+.
T Consensus 1 ~~i~vGtP~q~~~~~~DTGSs~~Wv~~~~c~--~~~~~~~~~~~~~~~sst~~~~~------------------~~~~~~ 60 (109)
T cd05470 1 IEIGIGTPPQTFNVLLDTGSSNLWVPSVDCQ--SLAIYSHSSYDDPSASSTYSDNG------------------CTFSIT 60 (109)
T ss_pred CEEEeCCCCceEEEEEeCCCCCEEEeCCCCC--CcccccccccCCcCCCCCCCCCC------------------cEEEEE
Confidence 4799999999999999999999999999998 6654556667 999999999876 999999
Q ss_pred cCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCC--CCCcceeeec
Q 014537 172 YGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLF--NSKTTGIVGL 224 (423)
Q Consensus 172 Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~--~~~~~GilGL 224 (423)
|++|+.. |.++.|+|+|++. .++++.|||+....+.+ ....+|||||
T Consensus 61 Y~~g~~~-g~~~~D~v~ig~~-----~~~~~~fg~~~~~~~~~~~~~~~~GilGL 109 (109)
T cd05470 61 YGTGSLS-GGLSTDTVSIGDI-----EVVGQAFGCATDEPGATFLPALFDGILGL 109 (109)
T ss_pred eCCCeEE-EEEEEEEEEECCE-----EECCEEEEEEEecCCccccccccccccCC
Confidence 9999765 9999999999987 89999999999987753 4678999998
No 27
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=98.21 E-value=4.9e-06 Score=64.79 Aligned_cols=93 Identities=14% Similarity=0.215 Sum_probs=66.8
Q ss_pred cEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceee
Q 014537 90 NYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYS 169 (423)
Q Consensus 90 ~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~ 169 (423)
.|++++.|+ .+++.+++|||++.+|+...... .+. . ... .. ....
T Consensus 2 ~~~v~v~i~--~~~~~~llDTGa~~s~i~~~~~~--~l~-----~-------~~~-~~------------------~~~~ 46 (96)
T cd05483 2 HFVVPVTIN--GQPVRFLLDTGASTTVISEELAE--RLG-----L-------PLT-LG------------------GKVT 46 (96)
T ss_pred cEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--HcC-----C-------Ccc-CC------------------CcEE
Confidence 589999999 79999999999999999665322 110 0 000 00 4556
Q ss_pred EEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCC
Q 014537 170 VSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (423)
Q Consensus 170 ~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (423)
+...+|.........+.++||+. .++++.+........ ..+||||+.+
T Consensus 47 ~~~~~G~~~~~~~~~~~i~ig~~-----~~~~~~~~v~d~~~~----~~~gIlG~d~ 94 (96)
T cd05483 47 VQTANGRVRAARVRLDSLQIGGI-----TLRNVPAVVLPGDAL----GVDGLLGMDF 94 (96)
T ss_pred EEecCCCccceEEEcceEEECCc-----EEeccEEEEeCCccc----CCceEeChHH
Confidence 67777776666777999999987 788888877655432 5789999864
No 28
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=97.07 E-value=0.0028 Score=51.72 Aligned_cols=96 Identities=13% Similarity=0.197 Sum_probs=63.9
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCc
Q 014537 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNC 166 (423)
Q Consensus 87 ~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~ 166 (423)
.++.|++++.|. .+++.+++|||++.+-+....-. .. ..++.. .. .
T Consensus 8 ~~g~~~v~~~In--G~~~~flVDTGAs~t~is~~~A~--~L------gl~~~~------~~------------------~ 53 (121)
T TIGR02281 8 GDGHFYATGRVN--GRNVRFLVDTGATSVALNEEDAQ--RL------GLDLNR------LG------------------Y 53 (121)
T ss_pred CCCeEEEEEEEC--CEEEEEEEECCCCcEEcCHHHHH--Hc------CCCccc------CC------------------c
Confidence 468899999998 78999999999999988544221 01 011110 00 2
Q ss_pred eeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCC
Q 014537 167 QYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (423)
Q Consensus 167 ~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (423)
...+.-..|......+.-|.+.+|+. .+.|+.+.++... ...+|+||+.+
T Consensus 54 ~~~~~ta~G~~~~~~~~l~~l~iG~~-----~~~nv~~~v~~~~-----~~~~~LLGm~f 103 (121)
T TIGR02281 54 TVTVSTANGQIKAARVTLDRVAIGGI-----VVNDVDAMVAEGG-----ALSESLLGMSF 103 (121)
T ss_pred eEEEEeCCCcEEEEEEEeCEEEECCE-----EEeCcEEEEeCCC-----cCCceEcCHHH
Confidence 33333445655546678999999997 8888987776432 12379999874
No 29
>PF13650 Asp_protease_2: Aspartyl protease
Probab=96.95 E-value=0.0056 Score=46.64 Aligned_cols=89 Identities=18% Similarity=0.235 Sum_probs=55.3
Q ss_pred EEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCceeeEEc
Q 014537 93 IRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQYSVSY 172 (423)
Q Consensus 93 ~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~~~~~Y 172 (423)
+++.|+ .+++.+++|||++.+.+...-.. .. ...+.. .. ....+.-
T Consensus 1 V~v~vn--g~~~~~liDTGa~~~~i~~~~~~--~l------~~~~~~------~~------------------~~~~~~~ 46 (90)
T PF13650_consen 1 VPVKVN--GKPVRFLIDTGASISVISRSLAK--KL------GLKPRP------KS------------------VPISVSG 46 (90)
T ss_pred CEEEEC--CEEEEEEEcCCCCcEEECHHHHH--Hc------CCCCcC------Cc------------------eeEEEEe
Confidence 367777 68999999999998888554333 11 000000 00 1233333
Q ss_pred CCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecC
Q 014537 173 GDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLG 225 (423)
Q Consensus 173 g~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg 225 (423)
.+|.........+.++||+. .+.++.|-+... ....+||||+-
T Consensus 47 ~~g~~~~~~~~~~~i~ig~~-----~~~~~~~~v~~~-----~~~~~~iLG~d 89 (90)
T PF13650_consen 47 AGGSVTVYRGRVDSITIGGI-----TLKNVPFLVVDL-----GDPIDGILGMD 89 (90)
T ss_pred CCCCEEEEEEEEEEEEECCE-----EEEeEEEEEECC-----CCCCEEEeCCc
Confidence 44554445666778999986 777787766661 25678999974
No 30
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.90 E-value=0.027 Score=46.12 Aligned_cols=100 Identities=10% Similarity=0.113 Sum_probs=56.8
Q ss_pred EEeccEEeccCCCcEEEecCCcceecChhHHHHHHHHHHhhhccC-cC---CCCCCCcccccccCCCCCCCeEEEEEeCc
Q 014537 287 ISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEAQ-PV---ADPTGSLELCYSFNSLSQVPEVTIHFRGA 362 (423)
Q Consensus 287 i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~~-~~---~~~~~~~~~C~~~~~~~~~P~i~~~f~g~ 362 (423)
+.+||.. ..+++|||++.+.++.+..+.+ .-..... +. ..+..... +.. ......+.++|.
T Consensus 21 ~~Ing~~-----~~~LvDTGAs~s~Is~~~a~~l----gl~~~~~~~~~~~~~g~g~~~-~~g-----~~~~~~l~i~~~ 85 (124)
T cd05479 21 VEINGVP-----VKAFVDSGAQMTIMSKACAEKC----GLMRLIDKRFQGIAKGVGTQK-ILG-----RIHLAQVKIGNL 85 (124)
T ss_pred EEECCEE-----EEEEEeCCCceEEeCHHHHHHc----CCccccCcceEEEEecCCCcE-EEe-----EEEEEEEEECCE
Confidence 4456654 4689999999999999987764 2110000 00 00000000 110 123444455544
Q ss_pred EEEeCCCceEEEeCCCeEEEEEEecCCCcceechhhhcceEEEEECCCCEEEE
Q 014537 363 DVKLSRSNFFVKVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSF 415 (423)
Q Consensus 363 ~~~l~~~~~~~~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igf 415 (423)
.+.+ + +.+.+......|||..||+.+-.+.|+.+.+|-|
T Consensus 86 ~~~~---~-----------~~Vl~~~~~d~ILG~d~L~~~~~~ID~~~~~i~~ 124 (124)
T cd05479 86 FLPC---S-----------FTVLEDDDVDFLIGLDMLKRHQCVIDLKENVLRI 124 (124)
T ss_pred Eeee---E-----------EEEECCCCcCEEecHHHHHhCCeEEECCCCEEEC
Confidence 3221 1 1122322457799999999999999999998854
No 31
>cd05479 RP_DDI RP_DDI; retropepsin-like domain of DNA damage inducible protein. The family represents the retropepsin-like domain of DNA damage inducible protein. DNA damage inducible protein has a retropepsin-like domain and an amino-terminal ubiquitin-like domain and/or a UBA (ubiquitin-associated) domain. This CD represents the retropepsin-like domain of DDI.
Probab=95.54 E-value=0.11 Score=42.59 Aligned_cols=92 Identities=16% Similarity=0.256 Sum_probs=57.2
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCCCce
Q 014537 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGVNCQ 167 (423)
Q Consensus 88 ~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~~~~ 167 (423)
...+++++.|+ ++++.+++|||++.+++...-+. .+.-. +... ..
T Consensus 14 ~~~~~v~~~In--g~~~~~LvDTGAs~s~Is~~~a~--~lgl~------~~~~-------------------------~~ 58 (124)
T cd05479 14 VPMLYINVEIN--GVPVKAFVDSGAQMTIMSKACAE--KCGLM------RLID-------------------------KR 58 (124)
T ss_pred eeEEEEEEEEC--CEEEEEEEeCCCceEEeCHHHHH--HcCCc------cccC-------------------------cc
Confidence 45689999999 78999999999999999655333 22100 0000 11
Q ss_pred ee-EEcC-CCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEecCCCCCCCcceeeecCC
Q 014537 168 YS-VSYG-DGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNNGGLFNSKTTGIVGLGG 226 (423)
Q Consensus 168 ~~-~~Yg-~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~~~~~~~~~~GilGLg~ 226 (423)
+. ...+ ++....|....+.+.+++. ..+ ..|.+... ...|+|||+-+
T Consensus 59 ~~~~~~g~g~~~~~g~~~~~~l~i~~~-----~~~-~~~~Vl~~------~~~d~ILG~d~ 107 (124)
T cd05479 59 FQGIAKGVGTQKILGRIHLAQVKIGNL-----FLP-CSFTVLED------DDVDFLIGLDM 107 (124)
T ss_pred eEEEEecCCCcEEEeEEEEEEEEECCE-----Eee-eEEEEECC------CCcCEEecHHH
Confidence 11 1222 2234457777889999886 443 55554422 36789999874
No 32
>PF11925 DUF3443: Protein of unknown function (DUF3443); InterPro: IPR021847 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 400 to 434 amino acids in length. This protein has two conserved sequence motifs: NPV and DNNG.
Probab=95.23 E-value=0.31 Score=46.74 Aligned_cols=106 Identities=19% Similarity=0.254 Sum_probs=58.3
Q ss_pred cEEEEEEecCCC----ceE-EEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCC
Q 014537 90 NYLIRISIGTPP----TER-LAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (423)
Q Consensus 90 ~Y~~~i~vGtP~----q~~-~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (423)
.-++.|+|=-|. |.+ +|+|||||.=+=|..+.-... ..+..-+..+ .-..+ .+
T Consensus 23 ~p~VsVtVC~PGts~CqTIdnvlVDTGS~GLRi~~sAl~~~-----l~~~Lp~~t~-~g~~l------------aE---- 80 (370)
T PF11925_consen 23 IPTVSVTVCAPGTSNCQTIDNVLVDTGSYGLRIFASALPSS-----LAGSLPQQTG-GGAPL------------AE---- 80 (370)
T ss_pred ceeeEEEEeCCCCCCceeeCcEEEeccchhhhHHHhhhchh-----hhccCCcccC-CCcch------------hh----
Confidence 346667765553 566 799999998777755533100 0001111111 00111 01
Q ss_pred CceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEEEeEEec-------------CC--C-CCCCcceeeecCCC
Q 014537 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITFGCGTNN-------------GG--L-FNSKTTGIVGLGGG 227 (423)
Q Consensus 165 ~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~fg~~~~~-------------~~--~-~~~~~~GilGLg~~ 227 (423)
| ..|++|..+ |-+.+-+|+|++. ...++++-++.+. .. . ......||||+|.-
T Consensus 81 -C---~~F~sgytW-GsVr~AdV~igge-----~A~~iPiQvI~D~~~~~~P~sC~~~g~~~~t~~~lgaNGILGIg~~ 149 (370)
T PF11925_consen 81 -C---AQFASGYTW-GSVRTADVTIGGE-----TASSIPIQVIGDSAAPSVPSSCSNSGASMNTVADLGANGILGIGPF 149 (370)
T ss_pred -h---hhccCcccc-cceEEEEEEEcCe-----eccccCEEEEcCCCCCCCCchhhcCCCCCCCcccccCceEEeecCC
Confidence 1 346777788 9999999999987 3333333333221 10 0 14578999999964
No 33
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=93.30 E-value=0.13 Score=42.65 Aligned_cols=97 Identities=23% Similarity=0.378 Sum_probs=56.2
Q ss_pred CCcEEEecCCcceecChhHHHHHHHHHHhhhcc-C---cCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEE
Q 014537 298 TPDIVIDSGTTLTFLPQGYNSNLLSVMSSMIEA-Q---PVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFV 373 (423)
Q Consensus 298 ~~~~iiDsGt~~~~lp~~~~~~l~~~~~~~~~~-~---~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~ 373 (423)
...++||||++-.++.......+ .-.... . ......... .|. ...+.+.+.++|.++....
T Consensus 32 ~~~vLiDSGAThsFIs~~~a~~~----~l~~~~l~~~~~V~~~g~~~-~~~-----~~~~~~~~~i~g~~~~~dl----- 96 (135)
T PF08284_consen 32 PASVLIDSGATHSFISSSFAKKL----GLPLEPLPRPIVVSAPGGSI-NCE-----GVCPDVPLSIQGHEFVVDL----- 96 (135)
T ss_pred EEEEEEecCCCcEEccHHHHHhc----CCEEEEccCeeEEecccccc-ccc-----ceeeeEEEEECCeEEEeee-----
Confidence 34689999999999998876543 111100 0 000000000 011 1234555555554432211
Q ss_pred EeCCCeEEEEEEecCCCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 374 KVSEDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 374 ~~~~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
.+.+..+...|||.++|+.+...-|+.+++|-|...
T Consensus 97 ---------~vl~l~~~DvILGm~WL~~~~~~IDw~~k~v~f~~p 132 (135)
T PF08284_consen 97 ---------LVLDLGGYDVILGMDWLKKHNPVIDWATKTVTFNSP 132 (135)
T ss_pred ---------EEecccceeeEeccchHHhCCCEEEccCCEEEEeCC
Confidence 112222457899999999999999999999999754
No 34
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=92.61 E-value=0.14 Score=39.21 Aligned_cols=30 Identities=13% Similarity=0.053 Sum_probs=26.1
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCC
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c 122 (423)
|++++.|+ .+++.+++||||+.+++..+.+
T Consensus 1 ~~~~~~In--g~~i~~lvDTGA~~svis~~~~ 30 (91)
T cd05484 1 KTVTLLVN--GKPLKFQLDTGSAITVISEKTW 30 (91)
T ss_pred CEEEEEEC--CEEEEEEEcCCcceEEeCHHHH
Confidence 57899999 8999999999999999966543
No 35
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=90.90 E-value=1.2 Score=33.55 Aligned_cols=28 Identities=18% Similarity=0.233 Sum_probs=22.3
Q ss_pred EEEecCCCceEEEEEEcCCCceeeeCCCCC
Q 014537 94 RISIGTPPTERLAVADTGSDLIWTQCEPCP 123 (423)
Q Consensus 94 ~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~ 123 (423)
.+.|. .+++.+++|||++.+-+......
T Consensus 2 ~v~In--G~~~~fLvDTGA~~tii~~~~a~ 29 (86)
T cd06095 2 TITVE--GVPIVFLVDTGATHSVLKSDLGP 29 (86)
T ss_pred EEEEC--CEEEEEEEECCCCeEEECHHHhh
Confidence 45666 78999999999999999655443
No 36
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=90.28 E-value=0.53 Score=41.34 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=58.2
Q ss_pred ecCCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCCCCCCCCCCCCCCCCCCCCcccccCCCCccccCCCCCCCCCC
Q 014537 85 IPNNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCPPSQCYMQDSPLFDPKMSSTYKSLPCSSSQCASLNQKSCSGV 164 (423)
Q Consensus 85 ~~~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~~~~C~~~~~~~y~p~~Sst~~~~~c~~~~C~~~~~~~c~~~ 164 (423)
...++-|.++..|- .|++..++|||-+..-+..+.-. .-.+|.+. +.
T Consensus 100 k~~~GHF~a~~~VN--Gk~v~fLVDTGATsVal~~~dA~--------RlGid~~~------l~----------------- 146 (215)
T COG3577 100 KSRDGHFEANGRVN--GKKVDFLVDTGATSVALNEEDAR--------RLGIDLNS------LD----------------- 146 (215)
T ss_pred ecCCCcEEEEEEEC--CEEEEEEEecCcceeecCHHHHH--------HhCCCccc------cC-----------------
Confidence 45678899999998 89999999999999888555322 11233322 11
Q ss_pred CceeeEEcCCCCeeeEEEEEEEEEecCCCCCceecCceEE
Q 014537 165 NCQYSVSYGDGSFSNGNLATETVTLGSTTGQAVALPGITF 204 (423)
Q Consensus 165 ~~~~~~~Yg~g~~~~G~~~~D~v~ig~~~~~~~~~~~~~f 204 (423)
.++.+.-..|....-.+-.|.|.||+. .+.|+.=
T Consensus 147 -y~~~v~TANG~~~AA~V~Ld~v~IG~I-----~~~nV~A 180 (215)
T COG3577 147 -YTITVSTANGRARAAPVTLDRVQIGGI-----RVKNVDA 180 (215)
T ss_pred -CceEEEccCCccccceEEeeeEEEccE-----EEcCchh
Confidence 555666677877667789999999987 6666643
No 37
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=89.24 E-value=0.7 Score=33.68 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=29.8
Q ss_pred CCccEEEEEEecCCCceEEEEEEcCCCceeeeCCCCC
Q 014537 87 NNANYLIRISIGTPPTERLAVADTGSDLIWTQCEPCP 123 (423)
Q Consensus 87 ~~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c~ 123 (423)
..+.+++.+.|| .+++.+++|||++...|..+.+.
T Consensus 5 ~~g~~~v~~~I~--g~~~~alvDtGat~~fis~~~a~ 39 (72)
T PF13975_consen 5 DPGLMYVPVSIG--GVQVKALVDTGATHNFISESLAK 39 (72)
T ss_pred cCCEEEEEEEEC--CEEEEEEEeCCCcceecCHHHHH
Confidence 457899999999 69999999999999988766444
No 38
>cd05484 retropepsin_like_LTR_2 Retropepsins_like_LTR, pepsin-like aspartate proteases. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate peptidases is classif
Probab=86.56 E-value=9.1 Score=28.99 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=25.3
Q ss_pred EEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 286 AISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 286 ~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
.+.|||+.+ .+.+|||++.+.++++.+..+
T Consensus 4 ~~~Ing~~i-----~~lvDTGA~~svis~~~~~~l 33 (91)
T cd05484 4 TLLVNGKPL-----KFQLDTGSAITVISEKTWRKL 33 (91)
T ss_pred EEEECCEEE-----EEEEcCCcceEEeCHHHHHHh
Confidence 466788765 789999999999999988766
No 39
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=85.00 E-value=7.1 Score=30.85 Aligned_cols=24 Identities=17% Similarity=0.281 Sum_probs=21.0
Q ss_pred CcceechhhhcceEEEEECCCCEE
Q 014537 390 SVPIYGNIMQTNFLVGYDIEQQTV 413 (423)
Q Consensus 390 ~~~ilG~~fl~~~y~vfD~~~~~i 413 (423)
+..+||..||+.+-++.|+.++++
T Consensus 84 ~~~LLG~~~L~~l~l~id~~~~~~ 107 (107)
T TIGR03698 84 DEPLLGTELLEGLGIVIDYRNQGL 107 (107)
T ss_pred CccEecHHHHhhCCEEEehhhCcC
Confidence 478999999999999999987753
No 40
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=84.76 E-value=1.4 Score=34.17 Aligned_cols=30 Identities=23% Similarity=0.228 Sum_probs=24.5
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCCCC
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCEPC 122 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~~c 122 (423)
-+.+|.|. .+++.+++||||+.+-|....+
T Consensus 6 p~i~v~i~--g~~i~~LlDTGA~vsiI~~~~~ 35 (100)
T PF00077_consen 6 PYITVKIN--GKKIKALLDTGADVSIISEKDW 35 (100)
T ss_dssp SEEEEEET--TEEEEEEEETTBSSEEESSGGS
T ss_pred ceEEEeEC--CEEEEEEEecCCCcceeccccc
Confidence 35678888 6899999999999999966543
No 41
>PF02160 Peptidase_A3: Cauliflower mosaic virus peptidase (A3); InterPro: IPR000588 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of sequences contain an aspartic peptidase signature that belongs to MEROPS peptidase family A3, subfamily A3A (cauliflower mosaic virus-type endopeptidase, clan AA). Cauliflower mosaic virus belongs to the Retro-transcribing viruses, which have a double-stranded DNA genome. The genome includes an open reading frame (ORF V) that shows similarities to the pol gene of retroviruses. This ORF codes for a polyprotein that includes a reverse transcriptase, which, on the basis of a DTG triplet near the N terminus, was suggested to include an aspartic protease. The presence of an aspartic protease has been confirmed by mutational studies, implicating Asp-45 in catalysis. The protease releases itself from the polyprotein and is involved in reactions required to process the ORF IV polyprotein, which includes the viral coat protein []. The viral aspartic peptidase signature has also been found associated with a polyprotein encoded by integrated pararetrovirus-like sequences in the genome of Nicotiana tabacum (Common tobacco) []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis
Probab=82.70 E-value=2.1 Score=37.75 Aligned_cols=97 Identities=10% Similarity=0.081 Sum_probs=55.2
Q ss_pred CCcEEEecCCcceecChhHH-HHHHHHHHhhhccCcCCCCCCCcccccccCCCCCCCeEEEEEeCcEEEeCCCceEEEeC
Q 014537 298 TPDIVIDSGTTLTFLPQGYN-SNLLSVMSSMIEAQPVADPTGSLELCYSFNSLSQVPEVTIHFRGADVKLSRSNFFVKVS 376 (423)
Q Consensus 298 ~~~~iiDsGt~~~~lp~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~P~i~~~f~g~~~~l~~~~~~~~~~ 376 (423)
...++||||.+.-.....+. +.+++.....+...-+.+....+ =+ ..+.+.+.++|..|.+|-- ++.+
T Consensus 20 ~~~~~vDTGAt~C~~~~~iiP~e~we~~~~~i~v~~an~~~~~i--~~------~~~~~~i~I~~~~F~IP~i---Yq~~ 88 (201)
T PF02160_consen 20 NYHCYVDTGATICCASKKIIPEEYWEKSKKPIKVKGANGSIIQI--NK------KAKNGKIQIADKIFRIPTI---YQQE 88 (201)
T ss_pred EEEEEEeCCCceEEecCCcCCHHHHHhCCCcEEEEEecCCceEE--EE------EecCceEEEccEEEeccEE---EEec
Confidence 45689999999987766554 22222222111111110111111 11 3567888888877777643 2222
Q ss_pred CCeEEEEEEecCCCcceechhhhcceEEEEECCCCEEEEee
Q 014537 377 EDIVCSVFKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKP 417 (423)
Q Consensus 377 ~~~~C~~i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~ 417 (423)
++...|||.+|+|.|+=-...+ .+|-|..
T Consensus 89 -----------~g~d~IlG~NF~r~y~Pfiq~~-~~I~f~~ 117 (201)
T PF02160_consen 89 -----------SGIDIILGNNFLRLYEPFIQTE-DRIQFHK 117 (201)
T ss_pred -----------CCCCEEecchHHHhcCCcEEEc-cEEEEEe
Confidence 1468899999999887666654 4677764
No 42
>TIGR02281 clan_AA_DTGA clan AA aspartic protease, TIGR02281 family. This family consists of predicted aspartic proteases, typically from 180 to 230 amino acids in length, in MEROPS clan AA. This model describes the well-conserved 121-residue C-terminal region. The poorly conserved, variable length N-terminal region usually contains a predicted transmembrane helix. Sequences in the seed alignment and those scoring above the trusted cutoff are Proteobacterial; homologs scroing between trusted and noise are found in Pyrobaculum aerophilum str. IM2 (archaeal), Pirellula sp. (Planctomycetes), and Nostoc sp. PCC 7120 (Cyanobacteria).
Probab=81.05 E-value=3.5 Score=33.40 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=28.4
Q ss_pred CCCceEEEeEEEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 276 AKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 276 ~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
..++|.++ +.|||+. ..+++|||.+.+.++.+..+++
T Consensus 8 ~~g~~~v~---~~InG~~-----~~flVDTGAs~t~is~~~A~~L 44 (121)
T TIGR02281 8 GDGHFYAT---GRVNGRN-----VRFLVDTGATSVALNEEDAQRL 44 (121)
T ss_pred CCCeEEEE---EEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 45666544 5577775 4799999999999999987665
No 43
>cd05482 HIV_retropepsin_like Retropepsins, pepsin-like aspartate proteases. This is a subfamily of retropepsins. The family includes pepsin-like aspartate proteases from retroviruses, retrotransposons and retroelements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This gro
Probab=77.79 E-value=3 Score=31.67 Aligned_cols=26 Identities=19% Similarity=0.132 Sum_probs=21.6
Q ss_pred EEEecCCCceEEEEEEcCCCceeeeCCC
Q 014537 94 RISIGTPPTERLAVADTGSDLIWTQCEP 121 (423)
Q Consensus 94 ~i~vGtP~q~~~~~~DTGSs~~WV~~~~ 121 (423)
.+.|+ .|.+.+++|||++++-+....
T Consensus 2 ~~~i~--g~~~~~llDTGAd~Tvi~~~~ 27 (87)
T cd05482 2 TLYIN--GKLFEGLLDTGADVSIIAEND 27 (87)
T ss_pred EEEEC--CEEEEEEEccCCCCeEEcccc
Confidence 46677 799999999999999996543
No 44
>PF13650 Asp_protease_2: Aspartyl protease
Probab=77.00 E-value=3.4 Score=30.88 Aligned_cols=29 Identities=17% Similarity=0.480 Sum_probs=24.0
Q ss_pred EEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 287 ISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 287 i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
++|||+. ..+++|||++.+.+.++.++.+
T Consensus 3 v~vng~~-----~~~liDTGa~~~~i~~~~~~~l 31 (90)
T PF13650_consen 3 VKVNGKP-----VRFLIDTGASISVISRSLAKKL 31 (90)
T ss_pred EEECCEE-----EEEEEcCCCCcEEECHHHHHHc
Confidence 5677765 4799999999999999888776
No 45
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=72.28 E-value=20 Score=29.17 Aligned_cols=30 Identities=10% Similarity=0.257 Sum_probs=23.3
Q ss_pred EEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 286 AISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 286 ~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
.+++||+.+ .+++|||+..+.++.+..+.+
T Consensus 28 ~~~ing~~v-----kA~VDtGAQ~tims~~~a~r~ 57 (124)
T PF09668_consen 28 NCKINGVPV-----KAFVDTGAQSTIMSKSCAERC 57 (124)
T ss_dssp EEEETTEEE-----EEEEETT-SS-EEEHHHHHHT
T ss_pred EEEECCEEE-----EEEEeCCCCccccCHHHHHHc
Confidence 456787765 799999999999999988775
No 46
>PF13975 gag-asp_proteas: gag-polyprotein putative aspartyl protease
Probab=70.39 E-value=9.2 Score=27.69 Aligned_cols=29 Identities=24% Similarity=0.606 Sum_probs=24.1
Q ss_pred EEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 287 ISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 287 i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
+.+++..+ .+++|||.+..+++.+..+.+
T Consensus 13 ~~I~g~~~-----~alvDtGat~~fis~~~a~rL 41 (72)
T PF13975_consen 13 VSIGGVQV-----KALVDTGATHNFISESLAKRL 41 (72)
T ss_pred EEECCEEE-----EEEEeCCCcceecCHHHHHHh
Confidence 55676654 599999999999999988776
No 47
>cd05483 retropepsin_like_bacteria Bacterial aspartate proteases, retropepsin-like protease family. This family of bacteria aspartate proteases is a subfamily of retropepsin-like protease family, which includes enzymes from retrovirus and retrotransposons. While fungal and mammalian pepsin-like aspartate proteases are bilobal proteins with structurally related N- and C-termini, this family of bacteria aspartate proteases is half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified. This group of aspartate proteases is classified by MEROPS as the peptidase family A2 (retropepsin family, clan AA), subfamily A2A.
Probab=70.29 E-value=8 Score=29.12 Aligned_cols=30 Identities=17% Similarity=0.430 Sum_probs=23.7
Q ss_pred EEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 286 AISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 286 ~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
.+.+|++. ..+++|||++.++++.+..+.+
T Consensus 6 ~v~i~~~~-----~~~llDTGa~~s~i~~~~~~~l 35 (96)
T cd05483 6 PVTINGQP-----VRFLLDTGASTTVISEELAERL 35 (96)
T ss_pred EEEECCEE-----EEEEEECCCCcEEcCHHHHHHc
Confidence 45666655 4799999999999999876655
No 48
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=64.86 E-value=8.5 Score=28.93 Aligned_cols=29 Identities=21% Similarity=0.360 Sum_probs=24.0
Q ss_pred EEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 287 ISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 287 i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
+.+||+.+ .+++|||.+.+.++++..+.+
T Consensus 3 v~InG~~~-----~fLvDTGA~~tii~~~~a~~~ 31 (86)
T cd06095 3 ITVEGVPI-----VFLVDTGATHSVLKSDLGPKQ 31 (86)
T ss_pred EEECCEEE-----EEEEECCCCeEEECHHHhhhc
Confidence 56777764 789999999999999888765
No 49
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=60.98 E-value=25 Score=30.03 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=20.8
Q ss_pred cCCCcEEEecCCcceecChhHHHHH
Q 014537 296 VSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 296 ~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
.....++||||++..++-.++.+.|
T Consensus 43 ~t~i~vLfDSGSPTSfIr~di~~kL 67 (177)
T PF12384_consen 43 GTPIKVLFDSGSPTSFIRSDIVEKL 67 (177)
T ss_pred CcEEEEEEeCCCccceeehhhHHhh
Confidence 3446899999999999999887776
No 50
>PF12384 Peptidase_A2B: Ty3 transposon peptidase; InterPro: IPR024650 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Ty3 is a gypsy-type, retrovirus-like, element found in the budding yeast. The Ty3 aspartyl protease is required for processing of the viral polyprotein into its mature species [].
Probab=56.42 E-value=15 Score=31.25 Aligned_cols=30 Identities=13% Similarity=0.144 Sum_probs=23.0
Q ss_pred EEEEEEecCCCceEEEEEEcCCCceeeeCC
Q 014537 91 YLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (423)
Q Consensus 91 Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~ 120 (423)
=...+.++.-..+++++|||||....+...
T Consensus 33 ~T~~v~l~~~~t~i~vLfDSGSPTSfIr~d 62 (177)
T PF12384_consen 33 KTAIVQLNCKGTPIKVLFDSGSPTSFIRSD 62 (177)
T ss_pred cEEEEEEeecCcEEEEEEeCCCccceeehh
Confidence 344555555589999999999999888655
No 51
>PF00077 RVP: Retroviral aspartyl protease The Prosite entry also includes Pfam:PF00026; InterPro: IPR018061 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This group of aspartic peptidases belong to the MEROPS peptidase family A2 (retropepsin family, clan AA), subfamily A2A. The family includes the single domain aspartic proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). Retroviral aspartyl protease is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins.; PDB: 3D3T_B 3SQF_A 1NSO_A 2HB3_A 2HS2_A 2HS1_B 3K4V_A 3GGV_C 1HTG_B 2FDE_A ....
Probab=54.65 E-value=11 Score=29.00 Aligned_cols=26 Identities=8% Similarity=0.484 Sum_probs=20.8
Q ss_pred EEEeccEEeccCCCcEEEecCCcceecChhH
Q 014537 286 AISVGNQRLGVSTPDIVIDSGTTLTFLPQGY 316 (423)
Q Consensus 286 ~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~ 316 (423)
.|.++|+.+ .++||||+..+.++.+.
T Consensus 9 ~v~i~g~~i-----~~LlDTGA~vsiI~~~~ 34 (100)
T PF00077_consen 9 TVKINGKKI-----KALLDTGADVSIISEKD 34 (100)
T ss_dssp EEEETTEEE-----EEEEETTBSSEEESSGG
T ss_pred EEeECCEEE-----EEEEecCCCcceecccc
Confidence 466677654 79999999999999764
No 52
>cd06094 RP_Saci_like RP_Saci_like, retropepsin family. Retropepsin on retrotransposons with long terminal repeats (LTR) including Saci-1, -2 and -3 of Schistosoma mansoni. Retropepsins are related to fungal and mammalian pepsins. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identified
Probab=51.72 E-value=84 Score=23.93 Aligned_cols=22 Identities=23% Similarity=0.489 Sum_probs=18.2
Q ss_pred cCCCcEEEecCCcceecChhHH
Q 014537 296 VSTPDIVIDSGTTLTFLPQGYN 317 (423)
Q Consensus 296 ~~~~~~iiDsGt~~~~lp~~~~ 317 (423)
..+...++|||.....+|....
T Consensus 7 ~s~~~fLVDTGA~vSviP~~~~ 28 (89)
T cd06094 7 TSGLRFLVDTGAAVSVLPASST 28 (89)
T ss_pred CCCcEEEEeCCCceEeeccccc
Confidence 4567789999999999997654
No 53
>PF09668 Asp_protease: Aspartyl protease; InterPro: IPR019103 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Aspartic endopeptidases 3.4.23. from EC of vertebrate, fungal and retroviral origin have been characterised []. More recently, aspartic endopeptidases associated with the processing of bacterial type 4 prepilin [] and archaean preflagellin have been described [, ]. Structurally, aspartic endopeptidases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localised between the two lobes of the molecule. One lobe has probably evolved from the other through a gene duplication event in the distant past. In modern-day enzymes, although the three-dimensional structures are very similar, the amino acid sequences are more divergent, except for the catalytic site motif, which is very conserved. The presence and position of disulphide bridges are other conserved features of aspartic peptidases. All or most aspartate peptidases are endopeptidases. These enzymes have been assigned into clans (proteins which are evolutionary related), and further sub-divided into families, largely on the basis of their tertiary structure. This family of eukaryotic aspartyl proteases have a fold similar to retroviral proteases which implies they function proteolytically during regulated protein turnover []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis; PDB: 3S8I_A 2I1A_B.
Probab=44.48 E-value=39 Score=27.54 Aligned_cols=31 Identities=19% Similarity=0.100 Sum_probs=22.7
Q ss_pred CccEEEEEEecCCCceEEEEEEcCCCceeeeCC
Q 014537 88 NANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (423)
Q Consensus 88 ~~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~ 120 (423)
....|++++|+ .+++++++|||...+-+..+
T Consensus 22 v~mLyI~~~in--g~~vkA~VDtGAQ~tims~~ 52 (124)
T PF09668_consen 22 VSMLYINCKIN--GVPVKAFVDTGAQSTIMSKS 52 (124)
T ss_dssp ----EEEEEET--TEEEEEEEETT-SS-EEEHH
T ss_pred cceEEEEEEEC--CEEEEEEEeCCCCccccCHH
Confidence 34689999999 89999999999999988655
No 54
>cd05481 retropepsin_like_LTR_1 Retropepsins_like_LTR; pepsin-like aspartate protease from retrotransposons with long terminal repeats. Retropepsin of retrotransposons with long terminal repeats are pepsin-like aspartate proteases. While fungal and mammalian pepsins are bilobal proteins with structurally related N and C-terminals, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where catalytic residues have been identifi
Probab=44.17 E-value=25 Score=26.89 Aligned_cols=23 Identities=26% Similarity=0.473 Sum_probs=20.1
Q ss_pred CCcEEEecCCcceecChhHHHHH
Q 014537 298 TPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 298 ~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
...+.+|||++...+|...+..+
T Consensus 10 ~v~~~vDtGA~vnllp~~~~~~l 32 (93)
T cd05481 10 SVKFQLDTGATCNVLPLRWLKSL 32 (93)
T ss_pred eEEEEEecCCEEEeccHHHHhhh
Confidence 34789999999999999988776
No 55
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=39.78 E-value=30 Score=21.41 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=6.9
Q ss_pred CcchhhHHHHHHHHHHh
Q 014537 1 MATFLSCVFILFFLCFY 17 (423)
Q Consensus 1 M~~~~~~~~~~~~~~~~ 17 (423)
||.+ ++.+++++++++
T Consensus 1 Mk~l-~~a~~l~lLal~ 16 (36)
T PF08194_consen 1 MKCL-SLAFALLLLALA 16 (36)
T ss_pred Ccee-HHHHHHHHHHHH
Confidence 6633 443444444433
No 56
>COG5550 Predicted aspartyl protease [Posttranslational modification, protein turnover, chaperones]
Probab=39.61 E-value=21 Score=28.83 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=18.6
Q ss_pred cEEEecCCc-ceecChhHHHHH
Q 014537 300 DIVIDSGTT-LTFLPQGYNSNL 320 (423)
Q Consensus 300 ~~iiDsGt~-~~~lp~~~~~~l 320 (423)
..++|||.+ ++.+|..+++++
T Consensus 28 ~~LiDTGFtg~lvlp~~vaek~ 49 (125)
T COG5550 28 DELIDTGFTGYLVLPPQVAEKL 49 (125)
T ss_pred eeEEecCCceeEEeCHHHHHhc
Confidence 348999999 999999998887
No 57
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=36.55 E-value=43 Score=24.82 Aligned_cols=8 Identities=25% Similarity=0.538 Sum_probs=4.4
Q ss_pred ccEEEEEE
Q 014537 89 ANYLIRIS 96 (423)
Q Consensus 89 ~~Y~~~i~ 96 (423)
+.|-+-|.
T Consensus 67 gdYDVLIt 74 (100)
T PF05984_consen 67 GDYDVLIT 74 (100)
T ss_pred ccccEEEe
Confidence 45655553
No 58
>KOG0012 consensus DNA damage inducible protein [Replication, recombination and repair]
Probab=34.71 E-value=2.8e+02 Score=26.95 Aligned_cols=39 Identities=15% Similarity=0.144 Sum_probs=31.6
Q ss_pred EEEE-EEecCCCcceechhhhcceEEEEECCCCEEEEeeC
Q 014537 380 VCSV-FKGITNSVPIYGNIMQTNFLVGYDIEQQTVSFKPT 418 (423)
Q Consensus 380 ~C~~-i~~~~~~~~ilG~~fl~~~y~vfD~~~~~igfa~~ 418 (423)
.|-. +....+....||...||.+-..-|++++++-|+..
T Consensus 307 ~c~ftV~d~~~~d~llGLd~Lrr~~ccIdL~~~~L~ig~~ 346 (380)
T KOG0012|consen 307 PCSFTVLDRRDMDLLLGLDMLRRHQCCIDLKTNVLRIGNT 346 (380)
T ss_pred ccceEEecCCCcchhhhHHHHHhccceeecccCeEEecCC
Confidence 3644 66554678899999999999999999999887654
No 59
>COG3577 Predicted aspartyl protease [General function prediction only]
Probab=32.74 E-value=63 Score=28.70 Aligned_cols=37 Identities=19% Similarity=0.306 Sum_probs=29.1
Q ss_pred CCCceEEEeEEEEeccEEeccCCCcEEEecCCcceecChhHHHHH
Q 014537 276 AKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYNSNL 320 (423)
Q Consensus 276 ~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~~~l 320 (423)
.++||.++ ..|||+.+ ..++|||.|.+.++++....+
T Consensus 102 ~~GHF~a~---~~VNGk~v-----~fLVDTGATsVal~~~dA~Rl 138 (215)
T COG3577 102 RDGHFEAN---GRVNGKKV-----DFLVDTGATSVALNEEDARRL 138 (215)
T ss_pred CCCcEEEE---EEECCEEE-----EEEEecCcceeecCHHHHHHh
Confidence 56666644 56888875 789999999999999876655
No 60
>TIGR03698 clan_AA_DTGF clan AA aspartic protease, AF_0612 family. Members of this protein family are clan AA aspartic proteases, related to family TIGR02281. These proteins resemble retropepsins, pepsin-like proteases of retroviruses such as HIV. Members of this family are found in archaea and bacteria.
Probab=32.07 E-value=59 Score=25.54 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=18.8
Q ss_pred EEEEecCCCc----eEEEEEEcCCCcee
Q 014537 93 IRISIGTPPT----ERLAVADTGSDLIW 116 (423)
Q Consensus 93 ~~i~vGtP~q----~~~~~~DTGSs~~W 116 (423)
++|.|..|.| ++.+++|||.+..-
T Consensus 2 ~~v~~~~p~~~~~~~v~~LVDTGat~~~ 29 (107)
T TIGR03698 2 LDVELSNPKNPEFMEVRALVDTGFSGFL 29 (107)
T ss_pred EEEEEeCCCCCCceEEEEEEECCCCeEE
Confidence 5778887733 68999999999764
No 61
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=31.57 E-value=1.1e+02 Score=24.18 Aligned_cols=40 Identities=25% Similarity=0.387 Sum_probs=26.2
Q ss_pred EEEecCCCCCceecCceEEEeEEecCCCC-CCCcceeeecCCCCCc
Q 014537 186 TVTLGSTTGQAVALPGITFGCGTNNGGLF-NSKTTGIVGLGGGDIS 230 (423)
Q Consensus 186 ~v~ig~~~~~~~~~~~~~fg~~~~~~~~~-~~~~~GilGLg~~~~s 230 (423)
.+-|.-. ..+++.|--++...+.+ +....-+.|||++...
T Consensus 54 ~~iINc~-----i~~~~~y~kas~~FhQWrD~R~~tVyGLnF~Sk~ 94 (111)
T cd01206 54 KAIINST-----ITPNMTFTKTSQKFGQWADSRANTVYGLGFSSEQ 94 (111)
T ss_pred EEEEecc-----ccCCcceeecccccccccccccceeeecccCCHH
Confidence 4555544 55667666655555555 4555699999998765
No 62
>PF13752 DUF4165: Domain of unknown function (DUF4165)
Probab=22.14 E-value=1.9e+02 Score=23.42 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=36.3
Q ss_pred eeeeCCCCccCCCCeEEeeccCCCCceEEEeEEEEeccEEeccCCCcEEEecC
Q 014537 254 KINFGTNGIVSGPGVVSTPLTKAKTFYVLTIDAISVGNQRLGVSTPDIVIDSG 306 (423)
Q Consensus 254 ~l~fGg~~~~~g~~~~~~p~~~~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsG 306 (423)
.+.+.|... .|. ....|-. .++.|.|+.+=+...|+.+.......+||+-
T Consensus 73 ~~s~~G~ef-YGk-~ltlp~l-~dG~ytvk~eiL~s~g~vV~t~s~~~~IDtt 122 (124)
T PF13752_consen 73 RISSNGKEF-YGK-ELTLPAL-GDGTYTVKSEILDSQGTVVQTYSYPFTIDTT 122 (124)
T ss_pred eEEeCCcee-eee-EEEeccC-CCCcEEEEEEeeccCCCEEEeeeEeEEEecc
Confidence 344555433 344 3445555 7999999999999999988788888999974
No 63
>PF08284 RVP_2: Retroviral aspartyl protease; InterPro: IPR013242 This region defines single domain aspartyl proteases from retroviruses, retrotransposons, and badnaviruses (plant dsDNA viruses). These proteases are generally part of a larger polyprotein; usually pol, more rarely gag. Retroviral proteases appear to be homologous to a single domain of the two-domain eukaryotic aspartyl proteases.
Probab=21.69 E-value=1.3e+02 Score=24.79 Aligned_cols=30 Identities=10% Similarity=0.063 Sum_probs=24.7
Q ss_pred ccEEEEEEecCCCceEEEEEEcCCCceeeeCC
Q 014537 89 ANYLIRISIGTPPTERLAVADTGSDLIWTQCE 120 (423)
Q Consensus 89 ~~Y~~~i~vGtP~q~~~~~~DTGSs~~WV~~~ 120 (423)
..-.+.+.|. .++..+++|+|++...|..+
T Consensus 20 ~vi~g~~~I~--~~~~~vLiDSGAThsFIs~~ 49 (135)
T PF08284_consen 20 DVITGTFLIN--SIPASVLIDSGATHSFISSS 49 (135)
T ss_pred CeEEEEEEec--cEEEEEEEecCCCcEEccHH
Confidence 4567888888 58999999999999988544
No 64
>PTZ00165 aspartyl protease; Provisional
Probab=21.14 E-value=99 Score=31.65 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=28.9
Q ss_pred EeeccC-CCCceEEEeEEEEeccEEeccCCCcEEEecCCcceecChhHH
Q 014537 270 STPLTK-AKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGYN 317 (423)
Q Consensus 270 ~~p~~~-~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~~ 317 (423)
..|+.| .+..|.. .|+||.. .....+++|||++.+++|....
T Consensus 110 ~~~l~n~~d~~Y~~---~I~IGTP---pQ~f~Vv~DTGSS~lWVps~~C 152 (482)
T PTZ00165 110 QQDLLNFHNSQYFG---EIQVGTP---PKSFVVVFDTGSSNLWIPSKEC 152 (482)
T ss_pred ceecccccCCeEEE---EEEeCCC---CceEEEEEeCCCCCEEEEchhc
Confidence 344443 5566654 3667763 3456899999999999998644
No 65
>cd06098 phytepsin Phytepsin, a plant homolog of mammalian lysosomal pepsins. Phytepsin, a plant homolog of mammalian lysosomal pepsins, resides in grains, roots, stems, leaves and flowers. Phytepsin may participate in metabolic turnover and in protein processing events. In addition, it highly expressed in several plant tissues undergoing apoptosis. Phytepsin contains an internal region consisting of about 100 residues not present in animal or microbial pepsins. This region is thus called a plant specific insert. The insert is highly similar to saponins, which are lysosomal sphingolipid-activating proteins in mammalian cells. The saponin-like domain may have a role in the vacuolar targeting of phytepsin. Phytepsin, as its animal counterparts, possesses a topology typical of all aspartic proteases. They are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe has probably evolved fro
Probab=21.01 E-value=76 Score=30.22 Aligned_cols=35 Identities=17% Similarity=0.383 Sum_probs=24.1
Q ss_pred CCCceEEEeEEEEeccEEeccCCCcEEEecCCcceecChhH
Q 014537 276 AKTFYVLTIDAISVGNQRLGVSTPDIVIDSGTTLTFLPQGY 316 (423)
Q Consensus 276 ~~~~w~v~l~~i~v~~~~~~~~~~~~iiDsGt~~~~lp~~~ 316 (423)
.+..|.+ .|+||.. .....++||||++.+++|...
T Consensus 7 ~~~~Y~~---~i~iGtP---~Q~~~v~~DTGSs~lWv~~~~ 41 (317)
T cd06098 7 LDAQYFG---EIGIGTP---PQKFTVIFDTGSSNLWVPSSK 41 (317)
T ss_pred CCCEEEE---EEEECCC---CeEEEEEECCCccceEEecCC
Confidence 3455644 4566642 334679999999999999753
No 66
>cd05475 nucellin_like Nucellins, plant aspartic proteases specifically expressed in nucellar cells during degradation. Nucellins are important regulators of nucellar cell's progressive degradation after ovule fertilization. This degradation is a characteristic of programmed cell death. Nucellins are plant aspartic proteases specifically expressed in nucellar cells during degradation. The enzyme is characterized by having two aspartic protease catalytic site motifs, the Asp-Thr-Gly-Ser in the N-terminal and Asp-Ser-Gly-Ser in the C-terminal region, and two other regions nearly identical to two regions of plant aspartic proteases. Aspartic proteases are bilobal enzymes, each lobe contributing a catalytic Asp residue, with an extended active site cleft localized between the two lobes of the molecule. One lobe may be evolved from the other through ancient gene-duplication event. Although the three-dimensional structures of the two lobes are very similar, the amino acid sequences are more d
Probab=20.40 E-value=1.1e+02 Score=28.32 Aligned_cols=32 Identities=16% Similarity=0.168 Sum_probs=22.6
Q ss_pred ccEEEE---EEecC---CCceEEEEEEcCCCceeeeCC
Q 014537 89 ANYLIR---ISIGT---PPTERLAVADTGSDLIWTQCE 120 (423)
Q Consensus 89 ~~Y~~~---i~vGt---P~q~~~~~~DTGSs~~WV~~~ 120 (423)
..|.++ |.||. +.....+++|||++.+.++..
T Consensus 157 ~~y~v~l~~i~vg~~~~~~~~~~~ivDTGTt~t~lp~~ 194 (273)
T cd05475 157 KHYSPGPASLLFNGQPTGGKGLEVVFDSGSSYTYFNAQ 194 (273)
T ss_pred CeEEEeEeEEEECCEECcCCCceEEEECCCceEEcCCc
Confidence 456555 57873 223467899999999999655
Done!