BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014539
(423 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255544712|ref|XP_002513417.1| GTP-binding protein, putative [Ricinus communis]
gi|223547325|gb|EEF48820.1| GTP-binding protein, putative [Ricinus communis]
Length = 417
Score = 717 bits (1850), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 356/424 (83%), Positives = 381/424 (89%), Gaps = 8/424 (1%)
Query: 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
M R A + LIP L+ SS RN L +S RRFSS+ KISMSL+AG
Sbjct: 1 MARVVARSTLIPTLS-------SSFICRNPYLFTKTSQFINNSNRRFSSSFKISMSLKAG 53
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG VAVPDPRLHVLSGLSKSQ+AVP
Sbjct: 54 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGTVAVPDPRLHVLSGLSKSQRAVP 113
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV+GKVDPKSD+
Sbjct: 114 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVSGKVDPKSDI 173
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVT 239
DVINLELVFSDLDQIEKR+EKLKKGKAKDSQSKLK+ AEK+ALE+IQ ALMDGKPARSV
Sbjct: 174 DVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKLKEEAEKSALERIQGALMDGKPARSVA 233
Query: 240 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 299
L+DFE+D+IK LCLLTMKP+IYVANVAESDLA P +NPHV EVMNLASDLQSG V +SAQ
Sbjct: 234 LSDFEKDAIKHLCLLTMKPVIYVANVAESDLAVPDNNPHVKEVMNLASDLQSGLVAVSAQ 293
Query: 300 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 359
VE+ELTELP +ER EYL SLGVSESGLGNLIR+TY+LLGLRTYFTSGEKETKAWTI AGM
Sbjct: 294 VESELTELPVDERTEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAWTILAGM 353
Query: 360 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419
TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG+LRSEGKDY+VQEGDVMLF
Sbjct: 354 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGVLRSEGKDYVVQEGDVMLF 413
Query: 420 RFNV 423
RFNV
Sbjct: 414 RFNV 417
>gi|225462191|ref|XP_002269074.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD-like
[Vitis vinifera]
Length = 422
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/426 (84%), Positives = 387/426 (90%), Gaps = 7/426 (1%)
Query: 1 MVRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMS--LR 58
M RTA C+ L+P L P +SS FT++ L + + + FSS+S +S L+
Sbjct: 1 MARTA-CHTLLPTLAF---PFKSSFFTKSPILCPSQSLFFHAFPKPFSSSSSAKISMSLK 56
Query: 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118
AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS +SKSQ+
Sbjct: 57 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISKSQRV 116
Query: 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 178
VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS
Sbjct: 117 VPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKS 176
Query: 179 DVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARS 237
D+DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK+ AEK+ALE+I++ALMDGKPARS
Sbjct: 177 DIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGKPARS 236
Query: 238 VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 297
VTL DFE+D+IK LCLLTMKPIIYVANVAESDLA+PGSNP+V EVMNLAS+LQSG VTIS
Sbjct: 237 VTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGIVTIS 296
Query: 298 AQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRA 357
AQVE+ELTELPSEER E+L SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAWTI A
Sbjct: 297 AQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTILA 356
Query: 358 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 417
GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM
Sbjct: 357 GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 416
Query: 418 LFRFNV 423
LFRFNV
Sbjct: 417 LFRFNV 422
>gi|296082781|emb|CBI21786.3| unnamed protein product [Vitis vinifera]
Length = 370
Score = 702 bits (1813), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/370 (92%), Positives = 360/370 (97%), Gaps = 1/370 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS +SK
Sbjct: 1 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSDISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV
Sbjct: 61 SQRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGK 233
DPKSD+DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK+ AEK+ALE+I++ALMDGK
Sbjct: 121 DPKSDIDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKEEAEKSALERIREALMDGK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSVTL DFE+D+IK LCLLTMKPIIYVANVAESDLA+PGSNP+V EVMNLAS+LQSG
Sbjct: 181 PARSVTLTDFEKDAIKHLCLLTMKPIIYVANVAESDLAEPGSNPYVKEVMNLASELQSGI 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
VTISAQVE+ELTELPSEER E+L SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAW
Sbjct: 241 VTISAQVESELTELPSEERTEFLKSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE
Sbjct: 301 TILAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 360
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 361 GDVMLFRFNV 370
>gi|449453790|ref|XP_004144639.1| PREDICTED: GTP-dependent nucleic acid-binding protein EngD-like
[Cucumis sativus]
gi|449523505|ref|XP_004168764.1| PREDICTED: GTP-dependent nucleic acid-binding protein EngD-like
[Cucumis sativus]
Length = 421
Score = 692 bits (1786), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/430 (82%), Positives = 388/430 (90%), Gaps = 16/430 (3%)
Query: 1 MVRTAACNYLIPALTLLPKPME----SSLFTRNANL--IGVLGITTTSSRRRFSSASKIS 54
M RT C+++IP+L LLP SLF+R + + VLG RRFSS+SKIS
Sbjct: 1 MARTV-CSHIIPSL-LLPSKSSFFGTHSLFSRPSQFDHVMVLG-------RRFSSSSKIS 51
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG+VAVPDPRLH LS LSK
Sbjct: 52 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGVVAVPDPRLHKLSDLSK 111
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+AV AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK+
Sbjct: 112 SQRAVAASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKI 171
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGK 233
DPK+D+DVINLELVFSDLDQIEKR+EKLKKGKAKDSQSK+K+ AEK+ALEKIQ+ L+DGK
Sbjct: 172 DPKTDIDVINLELVFSDLDQIEKRLEKLKKGKAKDSQSKVKEEAEKSALEKIQKVLLDGK 231
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSVTL DFE+D+IK LCLLTMKP+IYVANVAESDLA+P SN HV EVM LAS+LQSG
Sbjct: 232 PARSVTLTDFEKDAIKHLCLLTMKPVIYVANVAESDLAEPASNLHVKEVMGLASELQSGI 291
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
VT+SAQVE+EL+ELPSEER EYL SLGVSESGLGNLIR+TY+LLGLRTYFTSGEKETKAW
Sbjct: 292 VTVSAQVESELSELPSEERFEYLKSLGVSESGLGNLIRATYNLLGLRTYFTSGEKETKAW 351
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGMTAPQAAGVIHSDFE+GFIRAETVAYDDFVAAGS AAAREKGLLR+EGK+YIVQE
Sbjct: 352 TILAGMTAPQAAGVIHSDFERGFIRAETVAYDDFVAAGSFAAAREKGLLRAEGKEYIVQE 411
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 412 GDVMLFRFNV 421
>gi|356526427|ref|XP_003531819.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD [Glycine
max]
Length = 420
Score = 682 bits (1761), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/427 (80%), Positives = 379/427 (88%), Gaps = 18/427 (4%)
Query: 5 AACNYL--IPALTLLPKPMESSLFTRNANLIGVLGITTTSSR-----RRFSSASKISMS- 56
AACN+L +P+L P++S+LFT + ++TT +R RRFSS+S
Sbjct: 4 AACNHLHLVPSLV---HPLKSTLFTNHT-------LSTTRTRFYGIHRRFSSSSSKISMS 53
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RLHVLS LSKSQ
Sbjct: 54 LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKSQ 113
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+AVPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP
Sbjct: 114 RAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 173
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
KSD+DVINLELVFSDLDQIEKR++KLKKGKAKDSQ ++AEK+ALEKI++ALMDGKPAR
Sbjct: 174 KSDIDVINLELVFSDLDQIEKRIDKLKKGKAKDSQKLKEEAEKSALEKIREALMDGKPAR 233
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SVTL DFERD++K LCLLTMKP+IYVANVAESDLADP +N +V +V N+ S+LQS VTI
Sbjct: 234 SVTLTDFERDAVKHLCLLTMKPVIYVANVAESDLADPANNNYVKDVTNVVSELQSRIVTI 293
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAELTELP EER EYL SLGVSESGLGNLIR+TY LLGLRTYFTSGEKETKAWTI
Sbjct: 294 SAQVEAELTELPVEERQEYLQSLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTIL 353
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIHSDFEKGFIRAETV+Y+DFVAAGSL+AAREKGLLRSEGKDY+VQE DV
Sbjct: 354 AGMTAPQAAGVIHSDFEKGFIRAETVSYEDFVAAGSLSAAREKGLLRSEGKDYVVQEADV 413
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 414 MLFRFNV 420
>gi|224056743|ref|XP_002299001.1| predicted protein [Populus trichocarpa]
gi|222846259|gb|EEE83806.1| predicted protein [Populus trichocarpa]
Length = 370
Score = 674 bits (1740), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 328/370 (88%), Positives = 354/370 (95%), Gaps = 1/370 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL+VLS LSK
Sbjct: 1 MSLKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLNVLSELSK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+AVPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDIVHVNG V
Sbjct: 61 SQRAVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIVHVNGNV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGK 233
DPKSD+DVINLELVFSDLDQIEKR+EKLKKGKA+DSQSKLK+ AEK+ALE+I++ALMDGK
Sbjct: 121 DPKSDIDVINLELVFSDLDQIEKRLEKLKKGKARDSQSKLKEEAEKSALERIREALMDGK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L DFE+D++K LCLLTMKP+IYVANVAES+LAD G+NP+V EVMNLAS+LQSG
Sbjct: 181 PARSVALTDFEKDAVKHLCLLTMKPVIYVANVAESELADAGNNPYVKEVMNLASELQSGL 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
VTISAQVE+ELTELP EER E+L SLGVSESGLGNLI +TY LLGLRTYFTSGEKE+KAW
Sbjct: 241 VTISAQVESELTELPFEERNEFLKSLGVSESGLGNLITATYILLGLRTYFTSGEKESKAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGMTAPQAAGVIHSDFEKGFIRAETV+YDDFVAAGSLAAAREKGLLRSEGKDYIVQE
Sbjct: 301 TIHAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 360
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 361 GDVMLFRFNV 370
>gi|42562778|ref|NP_176001.2| putative GTP-binding protein [Arabidopsis thaliana]
gi|332195215|gb|AEE33336.1| putative GTP-binding protein [Arabidopsis thaliana]
Length = 421
Score = 674 bits (1738), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 333/424 (78%), Positives = 373/424 (87%), Gaps = 11/424 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC+ ++ A+ LLP LF+ N+ +GVL T +R FSS K+SMSL+AG
Sbjct: 4 AACSSVVTAMALLPSKSLLCRNQLLFSGNSKFVGVL----TLQKRCFSS--KVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVT 239
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK+K+ AEK+ALE+IQ+AL++GKPARSV
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSKVKEEAEKSALERIQEALLEGKPARSVA 237
Query: 240 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 299
L+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQ
Sbjct: 238 LSDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQ 297
Query: 300 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 359
VE+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGM
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357
Query: 360 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419
TAPQAAGVIHSDFEKGFIRAETVAY+DFV AGS+AAAREKGLLRSEGK+YIV+EGDVMLF
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLLRSEGKEYIVKEGDVMLF 417
Query: 420 RFNV 423
RFNV
Sbjct: 418 RFNV 421
>gi|297847982|ref|XP_002891872.1| hypothetical protein ARALYDRAFT_474672 [Arabidopsis lyrata subsp.
lyrata]
gi|297337714|gb|EFH68131.1| hypothetical protein ARALYDRAFT_474672 [Arabidopsis lyrata subsp.
lyrata]
Length = 421
Score = 673 bits (1736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/424 (79%), Positives = 371/424 (87%), Gaps = 11/424 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC ++ AL LP LF+ N+ +GVL T +R F ASK+SMSL+AG
Sbjct: 4 AACTSVVTALAFLPSTSLLCRNQLLFSGNSKFVGVL----TLQKRCF--ASKVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVT 239
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK K+ AEK+ALE+IQ+AL+DGKPARSV
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSKNKEEAEKSALERIQEALLDGKPARSVA 237
Query: 240 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 299
L+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQ
Sbjct: 238 LSDLEMEVVKHLCLLTMKPMIYVANVAENDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQ 297
Query: 300 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 359
VE+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGM
Sbjct: 298 VESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGM 357
Query: 360 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419
TAPQAAGVIHSDFEKGFIRAETVAY+DFV+AGSLAAAREKGLLRSEGK+YIV+EGDVMLF
Sbjct: 358 TAPQAAGVIHSDFEKGFIRAETVAYEDFVSAGSLAAAREKGLLRSEGKEYIVKEGDVMLF 417
Query: 420 RFNV 423
RFNV
Sbjct: 418 RFNV 421
>gi|6056379|gb|AAF02843.1|AC009894_14 Similar to GTP-binding protein [Arabidopsis thaliana]
Length = 419
Score = 672 bits (1733), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/423 (78%), Positives = 372/423 (87%), Gaps = 11/423 (2%)
Query: 5 AACNYLIPALTLLPKP----MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAG 60
AAC+ ++ A+ LLP LF+ N+ +GVL T +R FSS K+SMSL+AG
Sbjct: 4 AACSSVVTAMALLPSKSLLCRNQLLFSGNSKFVGVL----TLQKRCFSS--KVSMSLKAG 57
Query: 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120
IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LS SQK VP
Sbjct: 58 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSKLSGSQKTVP 117
Query: 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDV 180
AS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDI+HVNGKVDPKSD+
Sbjct: 118 ASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIIHVNGKVDPKSDI 177
Query: 181 DVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTL 240
DVINLEL+F DLDQI KR+E+LKKGKAKDSQSK ++AEK+ALE+IQ+AL++GKPARSV L
Sbjct: 178 DVINLELIFCDLDQIGKRIERLKKGKAKDSQSK-EEAEKSALERIQEALLEGKPARSVAL 236
Query: 241 NDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQV 300
+D E + +K LCLLTMKP+IYVANVAE+DLA+P N +V EV L+SDLQSG V +SAQV
Sbjct: 237 SDLEMEVVKHLCLLTMKPMIYVANVAETDLAEPEKNAYVEEVKGLSSDLQSGHVVVSAQV 296
Query: 301 EAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMT 360
E+ELTELP EER EYL SLGVSESGLGNLIR+TYSLLGL+TYFTSGEKET+AWTI AGMT
Sbjct: 297 ESELTELPLEERTEYLNSLGVSESGLGNLIRATYSLLGLQTYFTSGEKETRAWTIHAGMT 356
Query: 361 APQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420
APQAAGVIHSDFEKGFIRAETVAY+DFV AGS+AAAREKGLLRSEGK+YIV+EGDVMLFR
Sbjct: 357 APQAAGVIHSDFEKGFIRAETVAYEDFVTAGSIAAAREKGLLRSEGKEYIVKEGDVMLFR 416
Query: 421 FNV 423
FNV
Sbjct: 417 FNV 419
>gi|388499262|gb|AFK37697.1| unknown [Lotus japonicus]
Length = 424
Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/428 (79%), Positives = 373/428 (87%), Gaps = 9/428 (2%)
Query: 1 MVRTAACN-YLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMS--- 56
M R A + +++P+ P++S+LF RN L + + RFS +S S
Sbjct: 1 MARVACYHLHMVPSFV---HPLKSTLF-RNHTLFTIHSPHRYGVQPRFSFSSSSSSKISM 56
Query: 57 -LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RLHVLS LSKS
Sbjct: 57 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLHVLSDLSKS 116
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
Q+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDI+HVNGKVD
Sbjct: 117 QRVVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVD 176
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
PKSD+DVINLELVF DLDQIEKR++KLKKGK KDSQ ++AEK+ALEKI+ AL+DGKPA
Sbjct: 177 PKSDIDVINLELVFCDLDQIEKRLDKLKKGKPKDSQRVKEEAEKSALEKIRVALLDGKPA 236
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RSVTL D ERD++K LCLLTMKPIIYVANVAESDLADP N +VN+V N+AS+LQSG VT
Sbjct: 237 RSVTLTDSERDAVKHLCLLTMKPIIYVANVAESDLADPAKNNYVNDVTNVASELQSGIVT 296
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
+SAQVEAELTEL +EER EYL SLGVSESGLGNLIR+TYSLLGLRTYFTSGEKETKAWTI
Sbjct: 297 VSAQVEAELTELATEERKEYLNSLGVSESGLGNLIRATYSLLGLRTYFTSGEKETKAWTI 356
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
AGMTAPQAAGVIHSDFEKGFIRAETV+YDDFVAAGSLAAAREKG+LRSEGKDYIVQEGD
Sbjct: 357 LAGMTAPQAAGVIHSDFEKGFIRAETVSYDDFVAAGSLAAAREKGVLRSEGKDYIVQEGD 416
Query: 416 VMLFRFNV 423
VMLFRFNV
Sbjct: 417 VMLFRFNV 424
>gi|388508988|gb|AFK42560.1| unknown [Medicago truncatula]
Length = 417
Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 322/368 (87%), Positives = 344/368 (93%), Gaps = 1/368 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD RL VLS LSKSQ
Sbjct: 50 LKAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDSRLQVLSDLSKSQ 109
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPAS+EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF+DNDI+HVNGKVDP
Sbjct: 110 RMVPASIEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFDDNDIIHVNGKVDP 169
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPA 235
KSD+DVINLELVF+DLDQIEKR++KLKKGK KDSQSK+K+ AEK ALEKI+ AL+DGKPA
Sbjct: 170 KSDIDVINLELVFTDLDQIEKRLDKLKKGKTKDSQSKVKEEAEKTALEKIRVALLDGKPA 229
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RSVTL DFER+S+KQLCLLTMKPIIYVANVAESDLAD +N +V V N+AS+LQSG VT
Sbjct: 230 RSVTLTDFERESVKQLCLLTMKPIIYVANVAESDLADATNNDYVTGVKNVASELQSGVVT 289
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQVEAEL+EL EER EYL LGVSESGLGNLIR+TY LLGLRTYFTSGEKETKAWTI
Sbjct: 290 ISAQVEAELSELALEERQEYLKPLGVSESGLGNLIRATYDLLGLRTYFTSGEKETKAWTI 349
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSL AAREKGLLRSEGKDYIV+EGD
Sbjct: 350 LAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLGAAREKGLLRSEGKDYIVREGD 409
Query: 416 VMLFRFNV 423
VMLFRFNV
Sbjct: 410 VMLFRFNV 417
>gi|12957710|gb|AAK09228.1|AC084320_15 putative GTP-binding protein [Oryza sativa Japonica Group]
gi|108711387|gb|ABF99182.1| GTP-dependent nucleic acid-binding protein engD, putative,
expressed [Oryza sativa Japonica Group]
Length = 431
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/382 (80%), Positives = 347/382 (90%), Gaps = 3/382 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RRF+S ++ISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PNVG+VA+P
Sbjct: 50 RRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIP 109
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RLHVLS LSKS++ +P S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 110 DARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 169
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAA 221
ED+DIVHV+GKVDPKSD+DVINLEL+FSDLDQIEKR++KLKK K KD Q K+K+ AE+
Sbjct: 170 EDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTG 229
Query: 222 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 281
LEKIQ LMDGKPARSV L D E+++I+ LCLLTMKP+IYVANV ESDLA+PG+NPHV E
Sbjct: 230 LEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKE 289
Query: 282 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 341
V LA+DL+SG VTISAQVEAEL ELP EERVEYL SLGV+ESGLGNL+++TY LLGLRT
Sbjct: 290 VAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRT 349
Query: 342 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 401
YFT+G+KETKAWTI AGMTAPQAAGVIHSDF+KGFIRAETV+YDDFVAAGSL AREKGL
Sbjct: 350 YFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGL 409
Query: 402 LRSEGKDYIVQEGDVMLFRFNV 423
LR EGKDYIVQEGDVMLFRFNV
Sbjct: 410 LRLEGKDYIVQEGDVMLFRFNV 431
>gi|218193845|gb|EEC76272.1| hypothetical protein OsI_13746 [Oryza sativa Indica Group]
gi|222625906|gb|EEE60038.1| hypothetical protein OsJ_12813 [Oryza sativa Japonica Group]
Length = 428
Score = 642 bits (1657), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 308/382 (80%), Positives = 347/382 (90%), Gaps = 3/382 (0%)
Query: 45 RRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
RRF+S ++ISMSLRAGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTI PNVG+VA+P
Sbjct: 47 RRFASGRNARISMSLRAGIVGLPNVGKSTLFNAIVENGKAQAANFPFCTINPNVGVVAIP 106
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RLHVLS LSKS++ +P S+E VDIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCF
Sbjct: 107 DARLHVLSKLSKSKETIPTSIELVDIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCF 166
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAA 221
ED+DIVHV+GKVDPKSD+DVINLEL+FSDLDQIEKR++KLKK K KD Q K+K+ AE+
Sbjct: 167 EDDDIVHVSGKVDPKSDIDVINLELIFSDLDQIEKRLDKLKKSKTKDQQVKVKEQAERTG 226
Query: 222 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 281
LEKIQ LMDGKPARSV L D E+++I+ LCLLTMKP+IYVANV ESDLA+PG+NPHV E
Sbjct: 227 LEKIQTVLMDGKPARSVDLADHEKEAIQHLCLLTMKPVIYVANVTESDLAEPGNNPHVKE 286
Query: 282 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 341
V LA+DL+SG VTISAQVEAEL ELP EERVEYL SLGV+ESGLGNL+++TY LLGLRT
Sbjct: 287 VAKLATDLESGMVTISAQVEAELAELPLEERVEYLKSLGVTESGLGNLVKATYDLLGLRT 346
Query: 342 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 401
YFT+G+KETKAWTI AGMTAPQAAGVIHSDF+KGFIRAETV+YDDFVAAGSL AREKGL
Sbjct: 347 YFTTGDKETKAWTILAGMTAPQAAGVIHSDFQKGFIRAETVSYDDFVAAGSLGVAREKGL 406
Query: 402 LRSEGKDYIVQEGDVMLFRFNV 423
LR EGKDYIVQEGDVMLFRFNV
Sbjct: 407 LRLEGKDYIVQEGDVMLFRFNV 428
>gi|224030549|gb|ACN34350.1| unknown [Zea mays]
gi|414873180|tpg|DAA51737.1| TPA: hypothetical protein ZEAMMB73_901646 [Zea mays]
Length = 431
Score = 642 bits (1656), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 315/412 (76%), Positives = 357/412 (86%), Gaps = 9/412 (2%)
Query: 15 TLLPKPMESSLFTRNANLIGVLGITTTSSRRRFSS--ASKISMSLRAGIVGLPNVGKSTL 72
T LP P SS ++ + RRFSS A++ISMSLRAGIVGLPNVGKSTL
Sbjct: 26 TTLPSPYGSSALHQHWRW------SRACRTRRFSSGRAARISMSLRAGIVGLPNVGKSTL 79
Query: 73 FNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132
FNA+VENGKAQAANFPFCTI PNVG+VA+PDPRL VLS LSKSQ+ VP S+E VDIAGLV
Sbjct: 80 FNAIVENGKAQAANFPFCTISPNVGVVAIPDPRLQVLSKLSKSQQTVPTSIELVDIAGLV 139
Query: 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDL 192
KGAS+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDP+SD+DVINLEL+FSDL
Sbjct: 140 KGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPRSDIDVINLELIFSDL 199
Query: 193 DQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQL 251
+QIEKR++KL K K KD+Q K+K+ AEK+ LEKIQQALM+GKPARSV L + E+++IK L
Sbjct: 200 EQIEKRLDKLNKSKTKDTQVKVKEQAEKSGLEKIQQALMEGKPARSVDLAEHEKEAIKHL 259
Query: 252 CLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEE 311
LLTMKP+IYVANV ESDLA+P SN HV EV ASDLQSG VTISAQVEAEL ELP EE
Sbjct: 260 YLLTMKPVIYVANVTESDLAEPDSNSHVKEVAKAASDLQSGMVTISAQVEAELAELPLEE 319
Query: 312 RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSD 371
RVEYL SLGV+ESGLGNL+++TY+LLGLRTYFT+G+KETKAWTI +GMTAPQAAGVIHSD
Sbjct: 320 RVEYLKSLGVAESGLGNLVKATYNLLGLRTYFTTGDKETKAWTILSGMTAPQAAGVIHSD 379
Query: 372 FEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
F+KGFIRAETV+YDDFVAAGSL AREKGLLR EGKDY+VQEGDVMLFRFNV
Sbjct: 380 FQKGFIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYVVQEGDVMLFRFNV 431
>gi|242032799|ref|XP_002463794.1| hypothetical protein SORBIDRAFT_01g006280 [Sorghum bicolor]
gi|241917648|gb|EER90792.1| hypothetical protein SORBIDRAFT_01g006280 [Sorghum bicolor]
Length = 431
Score = 641 bits (1654), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 313/408 (76%), Positives = 354/408 (86%), Gaps = 5/408 (1%)
Query: 17 LPKPMESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAV 76
LP P SS ++ SS R +++ISMSLRAGIVGLPNVGKSTLFNA+
Sbjct: 28 LPSPCGSSALLQHWRWSRASRARRFSSGR----SARISMSLRAGIVGLPNVGKSTLFNAI 83
Query: 77 VENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136
VENGKAQAANFPFCTI PNVG+VA+PDPRL VLS LSKSQ+ VP S+E VDIAGLVKGAS
Sbjct: 84 VENGKAQAANFPFCTINPNVGVVAIPDPRLQVLSKLSKSQQTVPTSIELVDIAGLVKGAS 143
Query: 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIE 196
+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDP+SD+DVINLEL+FSDL+QIE
Sbjct: 144 KGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPRSDIDVINLELIFSDLEQIE 203
Query: 197 KRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLT 255
KR++KL K K KD+Q K K+ AEK+ LEKIQQALM+GKPARSV L + E+++I+ LCLLT
Sbjct: 204 KRLDKLNKSKTKDAQVKAKEQAEKSGLEKIQQALMEGKPARSVDLAEHEKEAIQHLCLLT 263
Query: 256 MKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEY 315
MKP+IYVANV ESDLA+P SNPHV EV ASDLQSG VTISAQVEAEL ELP EERVEY
Sbjct: 264 MKPVIYVANVTESDLAEPDSNPHVKEVAKAASDLQSGMVTISAQVEAELAELPLEERVEY 323
Query: 316 LASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKG 375
L SLGV+ESGLGNL+++TY+LLGLRTYFT+GEKETKAWTI +GMTAPQAAGVIHSDF+KG
Sbjct: 324 LKSLGVAESGLGNLVKATYNLLGLRTYFTTGEKETKAWTILSGMTAPQAAGVIHSDFQKG 383
Query: 376 FIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
FIRAETV+YDDFVAAGSL AREKGLLR EGKDY+VQEGDVMLFRFNV
Sbjct: 384 FIRAETVSYDDFVAAGSLGVAREKGLLRLEGKDYVVQEGDVMLFRFNV 431
>gi|326511136|dbj|BAJ87582.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 438
Score = 628 bits (1620), Expect = e-177, Method: Compositional matrix adjust.
Identities = 313/418 (74%), Positives = 357/418 (85%), Gaps = 5/418 (1%)
Query: 11 IPALTLLPKP--MESSLFTRNANLIGVLGITTTSSRRRFSSA--SKISMSLRAGIVGLPN 66
+PA T LP P SS +G+ RR+SS +KISMSLRAGIVGLPN
Sbjct: 21 VPATTPLPLPSSCASSALLLRWQRSRGVGVVGGGCARRYSSGRNAKISMSLRAGIVGLPN 80
Query: 67 VGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126
VGKSTLFNA+VENGKAQAANFPFCTI PN G+VA+PDPRL VLS LSKS++ VP S+E V
Sbjct: 81 VGKSTLFNAIVENGKAQAANFPFCTINPNTGVVAIPDPRLQVLSKLSKSKQTVPTSIELV 140
Query: 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLE 186
DIAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDPKSD+DVINLE
Sbjct: 141 DIAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPKSDIDVINLE 200
Query: 187 LVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVTLNDFER 245
L+F DL+QIEKR++KLKK K KD Q K+K+ AE++ LEKI ALMDGKPARSV L D E+
Sbjct: 201 LIFCDLEQIEKRLDKLKKSKTKDPQVKVKEGAERSGLEKILDALMDGKPARSVDLPDHEK 260
Query: 246 DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELT 305
++I+ L LLTMKP+IYVANV ESDLADP NPHV EV LAS+L+SG VTISAQVEAEL+
Sbjct: 261 EAIQHLYLLTMKPVIYVANVTESDLADPDKNPHVQEVAKLASELKSGMVTISAQVEAELS 320
Query: 306 ELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAA 365
ELP EERVEYL SL V+ESGLGNL+++TY+LLGLRTYFT+GE+ETKAWTI +GMTAPQAA
Sbjct: 321 ELPLEERVEYLNSLDVAESGLGNLVKATYNLLGLRTYFTTGEQETKAWTIISGMTAPQAA 380
Query: 366 GVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
GVIHSDF+KGFIRAETV+YDDFVAAGSL AAREKGL+R EGK+YIVQEGDVMLFRFNV
Sbjct: 381 GVIHSDFQKGFIRAETVSYDDFVAAGSLGAAREKGLMRLEGKEYIVQEGDVMLFRFNV 438
>gi|357113186|ref|XP_003558385.1| PREDICTED: GTP-dependent nucleic acid-binding protein engD-like
[Brachypodium distachyon]
Length = 430
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 311/417 (74%), Positives = 355/417 (85%), Gaps = 11/417 (2%)
Query: 11 IPALTLLPKPMESS-LFTRNANLIGVLGITTTSSRRRFSSA--SKISMSLRAGIVGLPNV 67
+P T LP SS L R G RRFSS ++ISMSLRAGIVGLPNV
Sbjct: 21 VPPATTLPSSCASSALLLRWQRSRG-------GGARRFSSGRNARISMSLRAGIVGLPNV 73
Query: 68 GKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127
GKSTLFNA+VENGKAQAANFPFCTI PN G+VA+PDPRLHVLSGLSKS++ VP S+E VD
Sbjct: 74 GKSTLFNAIVENGKAQAANFPFCTINPNTGVVAIPDPRLHVLSGLSKSKQTVPTSIELVD 133
Query: 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLEL 187
IAGLVKGAS+GEGLGN+FLS+IREVDSILQVVRCFED+DIVHVNGKVDPKSD+DVINLEL
Sbjct: 134 IAGLVKGASKGEGLGNQFLSNIREVDSILQVVRCFEDDDIVHVNGKVDPKSDIDVINLEL 193
Query: 188 VFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGKPARSVTLNDFERD 246
+F DL+QIEKR++KLKK K KD Q K+K+ AE++ LEKI +ALMDGKPARSV L D E++
Sbjct: 194 IFCDLEQIEKRLDKLKKSKTKDPQVKVKEEAERSGLEKILKALMDGKPARSVELADHEKE 253
Query: 247 SIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTE 306
+++ L LLTMKP+IYVANV ESDLA+P NPHV EV LA +LQSG VTISAQVEAEL+E
Sbjct: 254 AVQHLYLLTMKPVIYVANVTESDLAEPDQNPHVKEVAKLALELQSGMVTISAQVEAELSE 313
Query: 307 LPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAG 366
LP EERVEYL SL V+ESGLG L+++TY+LLGLRTYFT+GE+ETKAWTI AGMTAPQAAG
Sbjct: 314 LPLEERVEYLKSLDVAESGLGVLVKATYNLLGLRTYFTTGEQETKAWTILAGMTAPQAAG 373
Query: 367 VIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
VIHSDF+KGFIRAETV+YDDFVA GSL AAREKG+LR EGK+Y+VQEGDVMLFRFNV
Sbjct: 374 VIHSDFQKGFIRAETVSYDDFVATGSLGAAREKGVLRLEGKEYVVQEGDVMLFRFNV 430
>gi|302767476|ref|XP_002967158.1| hypothetical protein SELMODRAFT_144847 [Selaginella moellendorffii]
gi|300165149|gb|EFJ31757.1| hypothetical protein SELMODRAFT_144847 [Selaginella moellendorffii]
Length = 376
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 282/375 (75%), Positives = 332/375 (88%), Gaps = 1/375 (0%)
Query: 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL 109
+SKISMSLR+GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVGIVAVPD RL VL
Sbjct: 2 SSKISMSLRSGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGIVAVPDTRLSVL 61
Query: 110 SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169
+ +S S++ VPAS+EFVDIAGLVKGAS+GEGLGNKFL HIREVDSI+QVVRCF+D+DI+H
Sbjct: 62 TDISSSKQTVPASMEFVDIAGLVKGASKGEGLGNKFLQHIREVDSIVQVVRCFDDSDILH 121
Query: 170 VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK-DAEKAALEKIQQA 228
VNGKVDP++D+D+INLEL FSD+ QIEKR+EKLKKG+AKD Q+K K D E AALE+I +A
Sbjct: 122 VNGKVDPEADIDIINLELAFSDIAQIEKRLEKLKKGRAKDPQTKAKEDMEAAALERINEA 181
Query: 229 LMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
L+ GK AR+V L++ ER ++QLCLLTMKP+IY ANVAE+DL DP N +V V+ A+D
Sbjct: 182 LLAGKAARTVDLSNDERKQVQQLCLLTMKPVIYAANVAETDLGDPSKNEYVQRVVKTAAD 241
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
L S V +SAQVE+EL EL ++ER E+L SLG +E GLG+L+++TYSLLGLRTYFT+GEK
Sbjct: 242 LGSEAVVVSAQVESELAELDAKERKEFLESLGAAEGGLGSLVKATYSLLGLRTYFTTGEK 301
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ETKAWTI++GMTAPQAAGVIHSDFE+GFIRAETVAY DFV+ GSL AAREKGLLRSEGKD
Sbjct: 302 ETKAWTIKSGMTAPQAAGVIHSDFERGFIRAETVAYKDFVSVGSLQAAREKGLLRSEGKD 361
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQEGDVMLFRFNV
Sbjct: 362 YVVQEGDVMLFRFNV 376
>gi|302754864|ref|XP_002960856.1| hypothetical protein SELMODRAFT_74913 [Selaginella moellendorffii]
gi|300171795|gb|EFJ38395.1| hypothetical protein SELMODRAFT_74913 [Selaginella moellendorffii]
Length = 429
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 283/379 (74%), Positives = 333/379 (87%), Gaps = 1/379 (0%)
Query: 46 RFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPR 105
R +SKISMSLR+GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVGIVAVPD R
Sbjct: 51 RRGMSSKISMSLRSGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGIVAVPDTR 110
Query: 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165
L VL+ +S S++ VPAS+EFVDIAGLVKGAS+GEGLGNKFL HIREVDSI+QVVRCF+D+
Sbjct: 111 LSVLTDISSSKQTVPASMEFVDIAGLVKGASKGEGLGNKFLQHIREVDSIVQVVRCFDDS 170
Query: 166 DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK-DAEKAALEK 224
DI+HVNGKVDP++D+D+INLEL FSD+ QIEKR+EKLKKG+AKD Q+K K D E AALE+
Sbjct: 171 DILHVNGKVDPEADIDIINLELAFSDIAQIEKRLEKLKKGRAKDPQTKAKEDMEAAALER 230
Query: 225 IQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 284
I +AL+ GK AR+V L++ ER ++QLCLLTMKP+IY ANVAE+DL DP N +V V+
Sbjct: 231 INEALLAGKAARTVDLSNDERKQVQQLCLLTMKPVIYAANVAETDLGDPSKNEYVQRVVK 290
Query: 285 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 344
A+DL S V +SAQVE+EL EL ++ER E+L SLG +E GLG+L+++TYSLLGLRTYFT
Sbjct: 291 TAADLGSEAVVVSAQVESELAELDAKERKEFLESLGAAEGGLGSLVKATYSLLGLRTYFT 350
Query: 345 SGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRS 404
+GEKETKAWTI++GMTAPQAAGVIHSDFE+GFIRAETVAY DFV+ GSL AAREKGLLRS
Sbjct: 351 TGEKETKAWTIKSGMTAPQAAGVIHSDFERGFIRAETVAYKDFVSVGSLQAAREKGLLRS 410
Query: 405 EGKDYIVQEGDVMLFRFNV 423
EGKDY+VQEGDVMLFRFNV
Sbjct: 411 EGKDYVVQEGDVMLFRFNV 429
>gi|168019233|ref|XP_001762149.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686553|gb|EDQ72941.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 370
Score = 585 bits (1509), Expect = e-164, Method: Compositional matrix adjust.
Identities = 277/370 (74%), Positives = 329/370 (88%), Gaps = 1/370 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L++GIVGLPNVGKSTLFNA+VENGKAQAANFPFCTIEPNVG+VAVPDPRL VLS LSK
Sbjct: 1 MALKSGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGVVAVPDPRLGVLSQLSK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK VP SVEFVDIAGLVKGASQGEGLGNKFLSHIREVD I+QVVRCFED+DIVHVNGKV
Sbjct: 61 SQKTVPTSVEFVDIAGLVKGASQGEGLGNKFLSHIREVDCIVQVVRCFEDDDIVHVNGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA-EKAALEKIQQALMDGK 233
DP+ D+D+INLEL F+D+ QIEKR+E+LKKG+AKD Q K K+ E AL++I +AL++GK
Sbjct: 121 DPEVDIDIINLELAFADMSQIEKRLERLKKGRAKDPQVKAKEEIEIEALKRINEALLNGK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V L++ E ++ QLCLLTMKP+I+ ANV+E+DLAD NPHV++V A+DL +
Sbjct: 181 PARMVPLSEEENKAVLQLCLLTMKPVIFAANVSEADLADASGNPHVDKVKKCAADLNAEV 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVEAELTEL +EER +YL S+GV+E GLG+L+R+TY+LLGLRTYFTSGEKET+AW
Sbjct: 241 VVVSAQVEAELTELDAEERTDYLQSIGVTEGGLGSLVRATYNLLGLRTYFTSGEKETRAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGMTAPQAAGVIH+DFE+GFIRAET+AYDD+V AGS AA++KGL+R+EGKDYIV+E
Sbjct: 301 TILAGMTAPQAAGVIHTDFERGFIRAETIAYDDYVQAGSYPAAKDKGLMRAEGKDYIVKE 360
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 361 GDVMLFRFNV 370
>gi|307105683|gb|EFN53931.1| hypothetical protein CHLNCDRAFT_25367 [Chlorella variabilis]
Length = 370
Score = 515 bits (1327), Expect = e-143, Method: Compositional matrix adjust.
Identities = 249/368 (67%), Positives = 295/368 (80%), Gaps = 1/368 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPN+GKST+FNA+ EN KAQAANFPFCTIEPNVGIVAVPDPRL LS +S
Sbjct: 1 MALKTGIVGLPNIGKSTMFNALCENAKAQAANFPFCTIEPNVGIVAVPDPRLQELSKISG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+K +P SVEFVDIAGLVKGAS+GEGLGN+FL++IRE DSI+QVVRCFED D++HV GKV
Sbjct: 61 SEKIIPTSVEFVDIAGLVKGASKGEGLGNQFLANIRECDSIVQVVRCFEDGDVIHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQ-SKLKDAEKAALEKIQQALMDGK 233
DP D DVIN EL +D+ QIEKR+E+LKK K K + +K + E AL++I AL K
Sbjct: 121 DPLDDTDVINFELALADITQIEKRLERLKKTKGKSGEEAKRNEVEAGALQRIMAALEQNK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L+D E + ++ L LLT KP++Y ANVAE DLADPG+N HV + + A + G
Sbjct: 181 PARSVALSDEEAELVRGLYLLTAKPMVYAANVAEDDLADPGANRHVAALRSKAEEEGRGV 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVEAEL EL SEE EYLA LGV E GL +LIR TY LGL TYFT+GEKET+AW
Sbjct: 241 VVVSAQVEAELNELDSEEAAEYLAGLGVEEGGLKSLIRCTYQQLGLLTYFTTGEKETRAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAGVIH+DFEKGFIRAETVAYDDFVAAG AA+EKGLLR EGK+Y+V+E
Sbjct: 301 TIHEGYTAPQAAGVIHTDFEKGFIRAETVAYDDFVAAGGFGAAKEKGLLRLEGKEYVVKE 360
Query: 414 GDVMLFRF 421
GD+++FRF
Sbjct: 361 GDILMFRF 368
>gi|434391453|ref|YP_007126400.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]
gi|428263294|gb|AFZ29240.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 7428]
Length = 363
Score = 503 bits (1296), Expect = e-140, Method: Compositional matrix adjust.
Identities = 252/369 (68%), Positives = 298/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQVLGEISASA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
K D+++INLEL +DL QIE+R+E+ KK +A+ S KDA E + LEK+ AL +GK
Sbjct: 122 KRDIEIINLELALADLAQIERRIERTKK-QARTS----KDAQFEVSVLEKLSTALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + L + E +IK L LL+ KPIIY ANV+E DLA N +V +V +AS + V
Sbjct: 177 VRQINLTEEEATTIKGLGLLSGKPIIYAANVSEEDLAT--GNEYVEQVRQIASQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ E+LASLGV E GL +LIR+TY LLGLRTYFTSG KET+AWT
Sbjct: 235 IVSAQVEAELVELPEEDKAEFLASLGVEEGGLKSLIRATYELLGLRTYFTSGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGL+RSEGK+Y+VQEG
Sbjct: 295 IHAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLVRSEGKEYVVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|56750976|ref|YP_171677.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus
elongatus PCC 6301]
gi|81299365|ref|YP_399573.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus
elongatus PCC 7942]
gi|56685935|dbj|BAD79157.1| probable GTP binding protein [Synechococcus elongatus PCC 6301]
gi|81168246|gb|ABB56586.1| conserved hypothetical protein [Synechococcus elongatus PCC 7942]
Length = 363
Score = 502 bits (1293), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/367 (67%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL L+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDTRLAALTEISSSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR+VD+I+QVVRCF+D+DI+HV G VDP
Sbjct: 62 QTVPTRIEFVDIAGLVKGASQGEGLGNQFLSHIRQVDAIVQVVRCFDDDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL QIE+R+E+L+K + ++ AE A LE++Q L GK AR
Sbjct: 122 ARDIEIINLELALADLGQIERRIERLRKQARTNKEAA---AELAVLERLQPHLDAGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L + E I L LLT KP+IY ANV+E +LA N +V +V +LA+ + V I
Sbjct: 179 QFELTEEEEALIAPLDLLTRKPLIYGANVSEGELAT--GNAYVEQVRSLAAAENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP EER +YL SLGV E GL +LIR+TY+LLGLRTYFT+G KET+AWTIR
Sbjct: 237 SAQVEAELVELPEEERADYLGSLGVEEGGLQSLIRATYALLGLRTYFTTGPKETRAWTIR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 AGMTAPQAAGVIHSDFERGFIRAETVAYADLVATGSMTAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|300863737|ref|ZP_07108668.1| GTP-dependent nucleic acid-binding protein EngD [Oscillatoria sp.
PCC 6506]
gi|300338244|emb|CBN53814.1| GTP-dependent nucleic acid-binding protein EngD [Oscillatoria sp.
PCC 6506]
Length = 363
Score = 502 bits (1292), Expect = e-139, Method: Compositional matrix adjust.
Identities = 246/367 (67%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL+VLS + S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLNVLSNICNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D+INLEL+ +DL QIEK++E+ +K +++L E ALEK+ L +GKP R
Sbjct: 122 LRDIDIINLELILADLAQIEKKIERTRKQARTSKEAQL---ELGALEKLAAVLNEGKPTR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+L + E +S+K L L+T KPIIY ANV+E +LA G N +V +V LAS + V +
Sbjct: 179 QCSLTEEEAESVKGLGLMTNKPIIYAANVSEDELA--GGNNYVEQVRELASKENAKVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP ER ++LASLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 237 SAQVESELVELPESERADFLASLGVEEGGLKSLIRATYELLGLRTYFTSGPKETRAWTIL 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAY D VA GS+ AA+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMLAPQAAGVIHSDFERGFIRAETVAYKDLVATGSMNAAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|427418921|ref|ZP_18909104.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7375]
gi|425761634|gb|EKV02487.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7375]
Length = 363
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/367 (66%), Positives = 299/367 (81%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPNVG+VAVPD RL VL+ +SKS+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNVGVVAVPDARLAVLTEISKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE++DI+HV+G +DP
Sbjct: 62 NTVPARIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVDGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D ++INLEL +DL+QIE+RME+++K +D +++ AE A LEKIQ L +GK AR
Sbjct: 122 LRDAEIINLELALADLEQIERRMERVRKQARRDPEAQ---AELAVLEKIQPVLAEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L D E IK L LT KPIIY ANV+E +LA+ N V ++ LA+ + VTI
Sbjct: 179 LVELEDDEELLIKSLGFLTRKPIIYGANVSEDELAE--GNDWVEQIKTLAAKENAQVVTI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP +ER+++L +LGV E GL +LIR+TY LLGLRTYFT+G +E++AWTI
Sbjct: 237 SAQVEAELLELPEDERIDFLEALGVEEGGLKSLIRATYDLLGLRTYFTTGPQESRAWTIN 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM+APQAAGVIHSDFE+GFIRAET+AY V GS+ AA+EKGLLRSEGKDY+VQEGDV
Sbjct: 297 AGMSAPQAAGVIHSDFERGFIRAETIAYKALVEHGSMNAAKEKGLLRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|427732590|ref|YP_007078827.1| GTP-binding protein YchF [Nostoc sp. PCC 7524]
gi|427368509|gb|AFY51230.1| GTP-binding protein YchF [Nostoc sp. PCC 7524]
Length = 363
Score = 499 bits (1284), Expect = e-138, Method: Compositional matrix adjust.
Identities = 246/367 (67%), Positives = 297/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSNISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I+LEL +DL Q+E+R+E+ +K + SK E LEK+ AL +GK R
Sbjct: 122 ARDIEIISLELGLADLAQVERRIERTRK---QARTSKEAQFEVTVLEKLAAALNEGKSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+LN+ E I+ L LLT KPIIY ANV+E DLA N V +V +A+ + V +
Sbjct: 179 QVSLNEEEAAVIQGLGLLTNKPIIYAANVSEDDLAT--GNKFVEQVRQIAAQENAQVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TY+LLGLRTYFTSG+KET+AWTI
Sbjct: 237 SAQVEAELVELPEEDKADFLASLGVEEGGLKSLIRATYTLLGLRTYFTSGQKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM+APQAAGVIHSDFE+GFIRAETVAY+D V +GSL AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 AGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTSGSLNAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|428307632|ref|YP_007144457.1| GTP-binding protein YchF [Crinalium epipsammum PCC 9333]
gi|428249167|gb|AFZ14947.1| GTP-binding protein YchF [Crinalium epipsammum PCC 9333]
Length = 363
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 242/367 (65%), Positives = 297/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL+VL+ +S+S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLNVLAKISESA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL QIE+R+E+ +K + ++++ E +ALEK+ AL +GKPAR
Sbjct: 122 LRDIEIINLELGLADLSQIERRIERTRKNARTNKEAQI---ELSALEKLSTALNEGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
VTL++ E +S+K L LLT KPIIY NV+E DLA N V +V A+ + V I
Sbjct: 179 QVTLSEEEAESVKLLGLLTSKPIIYATNVSEDDLAT--GNQWVEQVRQFATQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL +LP E++E+L SLGV E GL +LI +TY LLGLRTYFT+G KET+AWTI+
Sbjct: 237 SAQVESELVDLPEAEKLEFLESLGVKEGGLKSLIHATYELLGLRTYFTTGPKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM+APQAAGVIH+DFE+GFIRAETVAY+D VA SL+AA+EKGL+RSEGK+YIV EGDV
Sbjct: 297 TGMSAPQAAGVIHTDFERGFIRAETVAYNDLVATNSLSAAKEKGLVRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|354567155|ref|ZP_08986325.1| GTP-binding protein YchF [Fischerella sp. JSC-11]
gi|353543456|gb|EHC12914.1| GTP-binding protein YchF [Fischerella sp. JSC-11]
Length = 363
Score = 493 bits (1268), Expect = e-136, Method: Compositional matrix adjust.
Identities = 252/367 (68%), Positives = 296/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL+VL +SKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLGKISKSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL +DL QIE+R+E+ KK + SK E LEK+ AL +GK R
Sbjct: 122 ARDIETINLELGLADLAQIERRIERTKK---QARTSKEAQFELTVLEKLAAALNEGKSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+L + E IK L LLT KPIIY ANV+E +LA N V +V +A+ + V +
Sbjct: 179 QVSLTEEEAAVIKLLGLLTSKPIIYAANVSEDELAT--GNEFVEKVRQIAATENAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER ++LASLGV E GL +LIR+TY+LLGLRTYFTSGEKET+AWTI+
Sbjct: 237 SAQVEAELIELSEEERADFLASLGVEEGGLKSLIRATYTLLGLRTYFTSGEKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAYDD VAAGS+AAA+EKGL+RSEGKDY+V+EGDV
Sbjct: 297 AGMLAPQAAGVIHSDFERGFIRAETVAYDDLVAAGSMAAAKEKGLVRSEGKDYVVKEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|186686385|ref|YP_001869581.1| GTP-dependent nucleic acid-binding protein EngD [Nostoc punctiforme
PCC 73102]
gi|186468837|gb|ACC84638.1| GTP-binding protein YchF [Nostoc punctiforme PCC 73102]
Length = 363
Score = 492 bits (1267), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/369 (66%), Positives = 296/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLAKIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D+++IN+EL SDL QIE+R+++ +K +KD+Q E + LEK+ AL +GK
Sbjct: 122 ARDIEIINIELGLSDLAQIERRIDRTRKLARTSKDAQF-----EVSVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+LN+ E + IK L LLT KPIIY ANV+E +LA N V V +A+ + V
Sbjct: 177 VRQVSLNEEETEIIKGLELLTYKPIIYAANVSEDELAT--GNHFVETVRQIAATENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TYSLLGLRTYFT G KET+AWT
Sbjct: 235 IVSAQVEAELVELPEEDKADFLASLGVEEGGLKSLIRATYSLLGLRTYFTCGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA+EKGL+RSEGK+Y+VQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYKDLVTTGSMNAAKEKGLVRSEGKEYVVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|282901754|ref|ZP_06309669.1| GTP-binding protein, HSR1-related [Cylindrospermopsis raciborskii
CS-505]
gi|281193371|gb|EFA68353.1| GTP-binding protein, HSR1-related [Cylindrospermopsis raciborskii
CS-505]
Length = 400
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 249/374 (66%), Positives = 300/374 (80%), Gaps = 10/374 (2%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
K +M L+AGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+
Sbjct: 35 KFTM-LKAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDDRLNVLAK 93
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L+ S++ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV+
Sbjct: 94 LASSEQIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVS 153
Query: 172 GKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQAL 229
G VDP D+D+INLEL SDL Q+E+R+E+ +K +KD+Q ++ L+K+ AL
Sbjct: 154 GSVDPVRDIDIINLELGLSDLAQVERRIERSRKLARTSKDAQFEI-----TVLDKLVAAL 208
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+GK R V+L E IK L LLT KPIIY ANVAE DLA N V +V +A+
Sbjct: 209 NEGKLVRQVSLTPEEAGVIKNLGLLTSKPIIYAANVAEDDLAT--GNDFVEKVRAVAAQE 266
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V +SAQVEAEL ELP ++ ++LASLGV E GL +LIR+TY+LLGLRTYFTSG KE
Sbjct: 267 NAQVVIVSAQVEAELVELPDADKFDFLASLGVQEGGLKSLIRATYALLGLRTYFTSGPKE 326
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWTI AGM+APQAAGVIHSDFE+GFIRAETVAYDD V GS+ AA+EKGL+RSEGK+Y
Sbjct: 327 TRAWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYDDLVTHGSINAAKEKGLVRSEGKEY 386
Query: 410 IVQEGDVMLFRFNV 423
IVQEGDVMLFRFNV
Sbjct: 387 IVQEGDVMLFRFNV 400
>gi|428771363|ref|YP_007163153.1| GTP-binding protein YchF [Cyanobacterium aponinum PCC 10605]
gi|428685642|gb|AFZ55109.1| GTP-binding protein YchF [Cyanobacterium aponinum PCC 10605]
Length = 363
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 247/367 (67%), Positives = 290/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ LSKSQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKATAANFPFCTIEPNVGVVAVPDERLEVLAKLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+DVINLEL +DL Q+EKR+E+ +K K+ ++ E LEKI L +GKPAR
Sbjct: 122 LRDMDVINLELSLADLSQVEKRLERQRKQAKKEKEA---GEEVEILEKILPILNEGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L E+ IK L LLT KP+IY ANV++ DLA N VN+V A + V I
Sbjct: 179 LVELTQEEKAIIKPLGLLTAKPVIYAANVSDEDLAT--GNDWVNQVKQQAETENAKVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EE+ E+L SLGVSE GL +LI++TY LLGLRTY T+GE ET+AWTI
Sbjct: 237 SAQVESELVELSPEEKTEFLESLGVSEGGLQSLIQATYDLLGLRTYLTTGETETRAWTIL 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIHSDFE+GFIRAETV+Y D V GS+ AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 AGMTAPQAAGVIHSDFERGFIRAETVSYQDLVDCGSMTAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|282897871|ref|ZP_06305866.1| GTP-binding protein, HSR1-related [Raphidiopsis brookii D9]
gi|281197015|gb|EFA71916.1| GTP-binding protein, HSR1-related [Raphidiopsis brookii D9]
Length = 400
Score = 490 bits (1261), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/372 (66%), Positives = 297/372 (79%), Gaps = 9/372 (2%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S L+AGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIVAVPD RL+VL+ L+
Sbjct: 36 STMLKAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVAVPDDRLNVLAKLA 95
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S++ +PA VEFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV+G
Sbjct: 96 SSEQIIPARVEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVSGS 155
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D+D+INLEL SDL Q+E+R+E+ +K +KD+Q E L+K+ AL +
Sbjct: 156 VDPVRDIDIINLELGLSDLAQVERRIERSRKLARTSKDAQF-----EVTVLDKLVAALNE 210
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R V+L E IK L LLT KPIIY ANVAE DLA N V +V +A+ +
Sbjct: 211 GKSVRQVSLTPEEAAVIKNLGLLTSKPIIYAANVAEDDLAT--GNDFVEKVRAVAAQENA 268
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SAQVEAEL ELP ++V++LASLGV E GL +LIR+TY+LLGLRTYFTSG KET+
Sbjct: 269 QVVIVSAQVEAELVELPDADKVDFLASLGVQEGGLKSLIRATYALLGLRTYFTSGPKETR 328
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI AGM+APQAAGVIHSDFE+GFIRAETVAY+D V S+ AA+EKGL+RSEGK+YIV
Sbjct: 329 AWTIHAGMSAPQAAGVIHSDFERGFIRAETVAYEDLVTHRSINAAKEKGLVRSEGKEYIV 388
Query: 412 QEGDVMLFRFNV 423
QEGDVMLFRFNV
Sbjct: 389 QEGDVMLFRFNV 400
>gi|443311670|ref|ZP_21041295.1| GTP-binding protein YchF [Synechocystis sp. PCC 7509]
gi|442778243|gb|ELR88511.1| GTP-binding protein YchF [Synechocystis sp. PCC 7509]
Length = 363
Score = 489 bits (1260), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/369 (66%), Positives = 295/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVGI +VPD RL VL+ +SKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGIASVPDERLQVLADISKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQ EGLGNKFLSHIREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASQNEGLGNKFLSHIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKA--KDSQSKLKDAEKAALEKIQQALMDGKP 234
D+++INLEL +DLDQIE++ ++ +K KD+Q AE LEK+ AL GKP
Sbjct: 122 ARDIEIINLELGLADLDQIERKCDRTRKQARANKDAQ-----AEVLVLEKLITALNAGKP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V L++ E SIK L LLT KPIIY ANV+E +LA N V EV +A+ + V
Sbjct: 177 ARQVNLDEEELASIKDLGLLTNKPIIYAANVSEEELAT--GNKWVEEVRKIAAQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP+E+R ++LASLGV E GL +LIR+TY LLGLRTYFT+G KET+AWT
Sbjct: 235 IVSAQVEAELVELPAEDRADFLASLGVEEGGLKSLIRATYELLGLRTYFTAGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM APQAAGVIHSDFE+GFIRAETVAY D VA S+ AA+EKGL+RSEGK+Y+VQEG
Sbjct: 295 IHAGMFAPQAAGVIHSDFERGFIRAETVAYKDLVANKSMGAAKEKGLVRSEGKEYVVQEG 354
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 355 DVLLFRFNV 363
>gi|86604757|ref|YP_473520.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
JA-3-3Ab]
gi|86553299|gb|ABC98257.1| GTP-binding protein YchF [Synechococcus sp. JA-3-3Ab]
Length = 363
Score = 489 bits (1259), Expect = e-136, Method: Compositional matrix adjust.
Identities = 248/367 (67%), Positives = 291/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA+AANFPFCTIEPN+G VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKAEAANFPFCTIEPNIGRVAVPDERLQVLAKISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA +EFVDIAGLV GAS+GEGLGN+FLSHIR+VD+I+ VVRCF+D +IVHV G VDP
Sbjct: 62 AIVPAQIEFVDIAGLVAGASKGEGLGNQFLSHIRQVDAIVHVVRCFKDENIVHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+ VINLEL +DL QIE+R+E+++K D +++ E ALEK+Q AL +GKPAR
Sbjct: 122 VRDMGVINLELALADLAQIERRLERVRKQAKSDKTAQV---ELQALEKLQAALDEGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E SIK L LLT K +IY ANVAE++LA N V +V +A + V +
Sbjct: 179 LVPLSPEEEASIKGLGLLTRKKVIYAANVAETELAT--GNDWVEQVRQVAQAEGARVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP ER YL SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 237 SAQVEAELVELPPAERQAYLDSLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTIP 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AG TAPQAAGVIHSDFE+GFIRAET+AY+D VAAGSL+AAREKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGATAPQAAGVIHSDFERGFIRAETIAYEDLVAAGSLSAAREKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRF+V
Sbjct: 357 MLFRFHV 363
>gi|427719911|ref|YP_007067905.1| GTP-binding protein YchF [Calothrix sp. PCC 7507]
gi|427352347|gb|AFY35071.1| GTP-binding protein YchF [Calothrix sp. PCC 7507]
Length = 363
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/369 (66%), Positives = 294/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLAKIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D+D+IN+EL SDL QIE+R+++ +K +KD+Q E LEK+ AL +GK
Sbjct: 122 ARDIDIINIELGLSDLFQIERRIDRTRKLARTSKDAQF-----EVTILEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+L E + IK L LLT KPIIY ANV+E +LA N V +V +AS + V
Sbjct: 177 VRQVSLTAEETEIIKGLGLLTNKPIIYAANVSEDELAT--GNAFVEKVRQVASAENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++LASLGV E GL +LIR+TY+LLGLRTYFT G KET+AWT
Sbjct: 235 IVSAQVEAELVELPEEDKADFLASLGVQEGGLKSLIRATYALLGLRTYFTCGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAYD V GS+ AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYDALVTTGSMNAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|298492272|ref|YP_003722449.1| GTP-binding protein YchF ['Nostoc azollae' 0708]
gi|298234190|gb|ADI65326.1| GTP-binding protein YchF ['Nostoc azollae' 0708]
Length = 363
Score = 488 bits (1257), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/369 (66%), Positives = 296/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDDRLNVLARIATSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++INLEL SDL QIEKR+++ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 AQDIEIINLELGLSDLAQIEKRIDRTRK-QARTS----KDAQFEITVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R VTLN+ E IK L LLT KPIIY ANV+E DL N V +V +AS + V
Sbjct: 177 VRQVTLNEEEAAIIKGLGLLTNKPIIYAANVSEDDLET--GNDFVEQVRQVASRESTQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G +ET+AWT
Sbjct: 235 IVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYALLGLRTYFTCGPQETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY+D V GS+ A+EKGL+RSEGK+Y+VQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTHGSMNGAKEKGLVRSEGKEYVVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|428206579|ref|YP_007090932.1| GTP-binding protein YchF [Chroococcidiopsis thermalis PCC 7203]
gi|428008500|gb|AFY87063.1| GTP-binding protein YchF [Chroococcidiopsis thermalis PCC 7203]
Length = 363
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/367 (66%), Positives = 292/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLKVLAEISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVEGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIE+R ++ +K +++L E L+K+ +AL GKPAR
Sbjct: 122 VRDIEVINLELGLADLAQIERRSDRARKLARTSKEAQL---ELTVLDKLTEALNLGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+L D E IK L LLT KP+IY ANV+E DL+ N V +V A+ ++ V +
Sbjct: 179 QVSLTDEEAVLIKGLGLLTAKPVIYAANVSEDDLST--GNQWVEKVRQFAASDKAQVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL E+P EER E+LA+LGV E GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 237 SAQVESELVEIPEEERAEFLATLGVEEGGLKSLIRATYELLGLRTYFTTGPKETRAWTIT 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAYDD VA GS+ A+EKGL+RSEGK+YIV+EGDV
Sbjct: 297 AGMVAPQAAGVIHSDFERGFIRAETVAYDDLVANGSMNGAKEKGLVRSEGKEYIVKEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|440682880|ref|YP_007157675.1| GTP-binding protein YchF [Anabaena cylindrica PCC 7122]
gi|428679999|gb|AFZ58765.1| GTP-binding protein YchF [Anabaena cylindrica PCC 7122]
Length = 363
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 245/369 (66%), Positives = 296/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDDRLNVLAKIATSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D+++INLEL SDL QIE+R+++ +K +KD+Q ++ A LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLFQIERRIDRTRKLARTSKDAQFEI-----AVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+LN+ E + IK L LLT KPIIY ANV+E DLA N V V +A+ + V
Sbjct: 177 VRQVSLNEEEAEIIKGLGLLTNKPIIYAANVSEDDLAT--GNDFVERVQEVAAQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP ++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G KET+AWT
Sbjct: 235 IVSAQVEAELVELPEADKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTCGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY+D V GS+ AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVTHGSMNAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 355 DVLLFRFNV 363
>gi|86610344|ref|YP_479106.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
JA-2-3B'a(2-13)]
gi|86558886|gb|ABD03843.1| GTP-binding protein YchF [Synechococcus sp. JA-2-3B'a(2-13)]
Length = 363
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 247/367 (67%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA+AANFPFCTIEPNVG VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKAEAANFPFCTIEPNVGRVAVPDERLQVLAKISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P+ +EFVDIAGLV GAS+GEGLGN+FLSHIR+VD+++ VVRCF+D +IVHV G VDP
Sbjct: 62 EIIPSQIEFVDIAGLVAGASKGEGLGNQFLSHIRQVDAVVHVVRCFQDENIVHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+ VINLEL +DL QIE+R+E+++K D ++L E ALE++Q AL +GKPAR
Sbjct: 122 LRDIGVINLELALADLAQIERRIERVRKQAKSDKTAQL---ELQALEQLQAALDEGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E IK L LLT K +IY ANVAE+DLA N V +V A +G V +
Sbjct: 179 LVPLSPEEEQLIKGLGLLTRKKVIYAANVAETDLAS--GNAWVEQVRQFAEAEGAGVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP +ER YL SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 237 SAQVEAELVELPPDERQAYLDSLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTIP 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAPQAAGVIHSDFE+GFIRAETVAY D VAAGSL AA+EKGLLRSEGKDY+VQEGDV
Sbjct: 297 VGATAPQAAGVIHSDFERGFIRAETVAYADLVAAGSLNAAKEKGLLRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
M FRFNV
Sbjct: 357 MHFRFNV 363
>gi|218247856|ref|YP_002373227.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
8801]
gi|257060823|ref|YP_003138711.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
8802]
gi|218168334|gb|ACK67071.1| GTP-binding protein YchF [Cyanothece sp. PCC 8801]
gi|256590989|gb|ACV01876.1| GTP-binding protein YchF [Cyanothece sp. PCC 8802]
Length = 363
Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust.
Identities = 243/367 (66%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLQVLANLSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+ +K +AK K +AE ALEKI L +GK AR
Sbjct: 122 VRDIEVINLELALADLSQVEKRLERARK-QAKG--KKEAEAEIPALEKILAYLNEGKAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+LN+ E + IK L LLT KPIIY ANV+E DLA N V +V +A + + V +
Sbjct: 179 HVSLNEEEEELIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVKQVEGVAHNENAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL E+ EE+ +YL SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVEISEEEKADYLESLGVKEGGLQSLIKATYELLGLRTYLTTGPQETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIH+DFE+GFIRAETVAYDD VA ++ AA+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGMKAPQAAGVIHTDFERGFIRAETVAYDDLVACKTMVAAKEKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|443319257|ref|ZP_21048491.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 6406]
gi|442781084|gb|ELR91190.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 6406]
Length = 363
Score = 487 bits (1254), Expect = e-135, Method: Compositional matrix adjust.
Identities = 242/367 (65%), Positives = 291/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KAQAANFPFCTIEPNVGIVAVPDPRL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAQAANFPFCTIEPNVGIVAVPDPRLGVLAQISDSS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCFE+ DI+HV G +DP
Sbjct: 62 EIVPARVEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFENEDIIHVAGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D ++INLEL SDL Q+EKR+++ +K KD + + AE A+EK+ AL +G+ AR
Sbjct: 122 ARDAEIINLELALSDLAQLEKRLDRARKQAKKDKEIQ---AEVEAIEKLLPALNEGQSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++L E IK L LLT KP+IY ANV+E DLA N V +V +A+ Q+ V +
Sbjct: 179 QISLTLEEELLIKPLGLLTRKPVIYAANVSEDDLAT--GNAWVEKVRAIAATEQAQVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL +L EER ++L SLGV E GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 237 SAQVEAELVDLSQEERTDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPKETRAWTIT 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIH+DFE+GFIRAET+AY D V GS+ AA+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMVAPQAAGVIHTDFERGFIRAETIAYSDLVTFGSMGAAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|376006741|ref|ZP_09783956.1| translation-associated GTPase [Arthrospira sp. PCC 8005]
gi|375324805|emb|CCE19709.1| translation-associated GTPase [Arthrospira sp. PCC 8005]
Length = 363
Score = 484 bits (1246), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 290/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL + DL Q+E+R+E+ +K +++L E ALEKI L DGK AR
Sbjct: 122 VRDIEIINLELAYRDLSQVERRIERTRKQARTSKEAQL---ELGALEKIAAVLNDGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V I
Sbjct: 179 LVDLSEEEAEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E+ E+L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 237 SAQVESELVELSDSEKQEFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA++KGL+RSEGK+YIVQEGDV
Sbjct: 297 EGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNAAKDKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|317970481|ref|ZP_07971871.1| GTP-binding protein YchF [Synechococcus sp. CB0205]
Length = 363
Score = 484 bits (1245), Expect = e-134, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 287/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A+AAN+PFCTIEPN G+VAVPDPRL LS LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAEAANYPFCTIEPNSGVVAVPDPRLQQLSDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL Q+EKR E+LKK + SK AE ALE+IQ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQVEKRRERLKK---QARTSKEAQAEDEALERIQAVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV+L + E IK L LLT KPIIY NV+E DL+ N + EV LA +G V I
Sbjct: 179 SVSLTEEEAAMIKPLGLLTAKPIIYATNVSEDDLSR--GNAYCEEVAVLAEKEGAGTVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP E+R E+L LGV E GL +LIR+TYSLLGLRTYFT+GEKET+AWTI+
Sbjct: 237 SAQVEAELIELPEEDRAEFLEGLGVEEGGLQSLIRATYSLLGLRTYFTTGEKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ Y + AGSL+ AR KG LR+EGK+Y+V+EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGYKQLLEAGSLSEARNKGWLRAEGKEYVVEEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|307154902|ref|YP_003890286.1| GTP-binding protein YchF [Cyanothece sp. PCC 7822]
gi|306985130|gb|ADN17011.1| GTP-binding protein YchF [Cyanothece sp. PCC 7822]
Length = 363
Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKLSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+++++K +AK SK AE A LEK+ L +G+ AR
Sbjct: 122 LRDIEVINLELALADLAQVEKRIDRVRK-QAK--TSKDAQAELAVLEKVIAVLNEGQSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L + E D IK L LL+ KPIIY ANV+E DLA N V +V N+A + V +
Sbjct: 179 QAQLTEEEADLIKTLGLLSAKPIIYAANVSEDDLA--SGNEWVEQVRNIAQTEAAEVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL +L EER ++L SLGV E GL +LI++TY LLGLRTY T+G ET+AWTIR
Sbjct: 237 SAQVESELVDLSEEERKDFLESLGVEEGGLKSLIKATYHLLGLRTYLTTGPTETRAWTIR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETVAY D VA G++ AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 SGMKAPQAAGVIHSDFERGFIRAETVAYQDLVACGTMNAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|75910821|ref|YP_325117.1| GTP-dependent nucleic acid-binding protein EngD [Anabaena
variabilis ATCC 29413]
gi|75704546|gb|ABA24222.1| GTP-binding protein, HSR1-related protein [Anabaena variabilis ATCC
29413]
Length = 363
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 299/369 (81%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++I++EL SDL QIE+R+E+ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 ARDIEIISIELGLSDLAQIERRIERTRK-QARTS----KDAQFEITVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R ++L + E + IK L LLT KPIIY ANV+E +LA N V V +A+ + V
Sbjct: 177 VRQISLTEEEAEIIKGLGLLTNKPIIYAANVSEEELAT--GNEFVERVRQVAAQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFTSG+KET+AWT
Sbjct: 235 VVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYALLGLRTYFTSGQKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GSL AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSLIAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|414079340|ref|YP_007000764.1| GTP-binding protein YchF [Anabaena sp. 90]
gi|413972619|gb|AFW96707.1| GTP-binding protein YchF [Anabaena sp. 90]
Length = 363
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 244/369 (66%), Positives = 294/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+V+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGMVSVPDDRLNVLAKIATSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D+++INLEL SDL QIEKR+++ +K +KD+Q +++ LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLFQIEKRIDRSRKLARTSKDAQVEVE-----ILEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V LN E + IK L LLT KPIIY ANV+E DLA N V V +A+ + V
Sbjct: 177 VRQVGLNAEESEIIKGLGLLTNKPIIYAANVSEEDLAT--GNDFVERVREVAAVENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP ++ ++L SLGV E GL +LIR+TY+LLGLRTYFT G KET+AWT
Sbjct: 235 IVSAQVEAELVELPEADKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTCGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS++AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYHDLVTHGSMSAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 355 DVLLFRFNV 363
>gi|428776929|ref|YP_007168716.1| GTP-binding protein YchF [Halothece sp. PCC 7418]
gi|428691208|gb|AFZ44502.1| GTP-binding protein YchF [Halothece sp. PCC 7418]
Length = 363
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 242/369 (65%), Positives = 289/369 (78%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLEVLAKISNSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCFE++DIVHV+G VDP
Sbjct: 62 RIVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFENDDIVHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D++VINLEL +DL QIEKR+ + +K K KD+Q +L+ LEK+ A+ +GK
Sbjct: 122 VRDIEVINLELALADLAQIEKRIARTRKEAKKNKDAQVELE-----LLEKLAAAINEGKT 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V L + E D IK L LLT KPIIY NV+E DLA N V +V LA+ S V
Sbjct: 177 ARQVELTEDEEDLIKPLGLLTKKPIIYATNVSEDDLAT--GNQAVEQVRELAAKENSSVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQVE+EL EL EE+ ++L SLGV E GL +LIR+TY LLGLRTY T+GE ET+AWT
Sbjct: 235 VISAQVESELIELSDEEKADFLESLGVEEGGLQSLIRATYDLLGLRTYLTTGETETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IRAGM APQAAGVIHSDFE+GFIRAET++Y+ S AAAREKGL+RSEGKDY+VQEG
Sbjct: 295 IRAGMKAPQAAGVIHSDFERGFIRAETISYEKLAEIQSYAAAREKGLIRSEGKDYVVQEG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVIEFRFNV 363
>gi|17228218|ref|NP_484766.1| GTP-dependent nucleic acid-binding protein EngD [Nostoc sp. PCC
7120]
gi|17130068|dbj|BAB72680.1| all0723 [Nostoc sp. PCC 7120]
Length = 363
Score = 481 bits (1239), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/369 (67%), Positives = 298/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++I++EL SDL QIE+R+E+ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 ARDIEIISIELGLSDLAQIERRIERTRK-QARTS----KDAQFEVTVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R ++L + E + IK L LLT KPIIY ANV+E +LA N V V +A+ + V
Sbjct: 177 VRQISLTEEEAEIIKGLGLLTNKPIIYAANVSEEELAT--GNEFVERVRQVAAQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWT
Sbjct: 235 VVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GSL+AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSLSAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|209524577|ref|ZP_03273125.1| GTP-binding protein YchF [Arthrospira maxima CS-328]
gi|423064332|ref|ZP_17053122.1| GTP-binding protein YchF [Arthrospira platensis C1]
gi|209495035|gb|EDZ95342.1| GTP-binding protein YchF [Arthrospira maxima CS-328]
gi|406713575|gb|EKD08743.1| GTP-binding protein YchF [Arthrospira platensis C1]
Length = 363
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 290/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDQRLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCFE++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL + DL Q+E+R+E+ +K +++L E ALEKI L +GK AR
Sbjct: 122 VRDIEIINLELAYRDLSQVERRIERTRKQARTSKEAQL---ELGALEKIAAVLNEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V I
Sbjct: 179 LVDLSEEEAEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 237 SAQVESELVELSDSEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA++KGL+RSEGK+YIVQEGDV
Sbjct: 297 EGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNAAKDKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|434403132|ref|YP_007146017.1| GTP-binding protein YchF [Cylindrospermum stagnale PCC 7417]
gi|428257387|gb|AFZ23337.1| GTP-binding protein YchF [Cylindrospermum stagnale PCC 7417]
Length = 363
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 243/369 (65%), Positives = 294/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLDVLAKIASSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ + A VEFVDIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QILAARVEFVDIAGLVKGASKGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++IN+EL +DL QIE+R+++ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 ARDIEIINIELGLADLSQIERRIDRTRK-QARTS----KDAQFEITVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+L + E + IK L LLT KPIIY ANV+E +LA N V +V +AS + V
Sbjct: 177 VRQVSLTEEETEIIKGLELLTYKPIIYAANVSEEELAT--GNDFVEQVRLIASQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TYSLLGLRTYFT G KET+AWT
Sbjct: 235 IVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYSLLGLRTYFTCGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHSDFERGFIRAETVAYHDLVTTGSMNAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 355 DVLLFRFNV 363
>gi|411120865|ref|ZP_11393237.1| GTP-binding protein YchF [Oscillatoriales cyanobacterium JSC-12]
gi|410709534|gb|EKQ67049.1| GTP-binding protein YchF [Oscillatoriales cyanobacterium JSC-12]
Length = 363
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/367 (66%), Positives = 296/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNVGVVAVPDERLSVLAKISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCFE++DI+HV G V+P
Sbjct: 62 EIIPARVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVAGSVEP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+++ KK + + +L E ALEK+ L +GKPAR
Sbjct: 122 IRDIEVINLELALADLGQVEKRLDRAKKQARGNKELQL---EVDALEKLLAVLNEGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L + E ++K L +LT KPIIY ANV+E DLA N V +V LA+ + V +
Sbjct: 179 QVNLTEEEEMAVKALGMLTRKPIIYAANVSEDDLAT--GNHWVEQVRELAAQENAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP+EER ++L SLGVSE GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 237 SAQVESELIELPAEERADFLESLGVSEGGLQSLIRATYELLGLRTYFTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIH+DFE+GFIRAETVAY+D VAAGS+ AA+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGMVAPQAAGVIHTDFERGFIRAETVAYNDLVAAGSMNAAKEKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|428203386|ref|YP_007081975.1| GTP-binding protein YchF [Pleurocapsa sp. PCC 7327]
gi|427980818|gb|AFY78418.1| GTP-binding protein YchF [Pleurocapsa sp. PCC 7327]
Length = 363
Score = 481 bits (1237), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/366 (65%), Positives = 296/366 (80%), Gaps = 9/366 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLQVLAKLSHSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D++VINLEL +DL Q+E+R+++ +K +K++Q +L+ ALEK+ AL +GK
Sbjct: 122 VRDIEVINLELALADLAQVERRIDRTRKQARNSKEAQIELR-----ALEKLSAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +A+ S V
Sbjct: 177 ARQVDLSEEEAEAIKSLGLLTGKPIIYAANVSEEDLAQ--GNEWVEKVKQVAAAEGSKVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL +L ER +YLA+LGV E GL +LI++TY LLGLRTY T+G +E++AWT
Sbjct: 235 VVSAQVEAELVDLSEGERADYLAALGVEEGGLKSLIKATYELLGLRTYLTTGPQESRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IRAGM APQAAGVIHSDFEK FIRAET++Y+D VAAGS+AAAREKGL+RSEGKDY+VQEG
Sbjct: 295 IRAGMKAPQAAGVIHSDFEKKFIRAETISYEDLVAAGSMAAAREKGLVRSEGKDYVVQEG 354
Query: 415 DVMLFR 420
DVMLFR
Sbjct: 355 DVMLFR 360
>gi|220909626|ref|YP_002484937.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
7425]
gi|219866237|gb|ACL46576.1| GTP-binding protein YchF [Cyanothece sp. PCC 7425]
Length = 363
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 290/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL +L+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLQILANISSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGNKFL++IRE D+I+QVVRCFED+DI+HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASEGEGLGNKFLANIRETDAIVQVVRCFEDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+ VINLEL +DL+QI +R+E+ +K +++L E ALEK+ AL +GK AR
Sbjct: 122 VRDMSVINLELALADLEQIGRRIERTRKTARTSKEAQL---ELEALEKLSAALNEGKTAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+L++ E ++K L LLT KP+IY ANVAE DLA N V +V +A+ + V +
Sbjct: 179 QVSLSEEEEQAVKFLGLLTRKPVIYAANVAEDDLAT--GNAWVEQVRQVAATEGAEVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL +R ++LA+LGVSE GL +LIR+TY LLGLRT+FTSG KET+AWTI
Sbjct: 237 SAQVEAELVELSESDRQDFLATLGVSEGGLKSLIRATYDLLGLRTFFTSGPKETRAWTIL 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAETVAY D VA GS+ A+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 RGDKAPQAAGTIHSDFERGFIRAETVAYADLVATGSMTTAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|254430116|ref|ZP_05043819.1| GTP-binding protein YchF [Cyanobium sp. PCC 7001]
gi|197624569|gb|EDY37128.1| GTP-binding protein YchF [Cyanobium sp. PCC 7001]
Length = 363
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A+AAN+PFCTIEPN G+VAVPDPRL L+ +S+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAEAANYPFCTIEPNSGVVAVPDPRLQQLATISRSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCF+D+D++HV G VDP
Sbjct: 62 EIIPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFDDDDVIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL Q+EKR E+LKK + SK E LE+IQ L G AR
Sbjct: 122 VRDAEVINLELGLADLGQVEKRRERLKK---QVRTSKEAQQEDGVLERIQTVLEAGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V L ER ++ L LLT KPIIY +NV+E DLA G N HV V LA+ + V I
Sbjct: 179 TVPLTAEERSLVRPLGLLTAKPIIYASNVSEDDLA--GGNAHVEAVQALAAQEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP E+R E+L LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWTI
Sbjct: 237 SAQVEAELIELPEEDRAEFLEGLGVSEGGLQSLIRATYALLGLRTYFTTGEKETRAWTIT 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ + V AGSLA AR +G LRSEGKDY+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGHQQLVEAGSLAEARNRGWLRSEGKDYVVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|384252422|gb|EIE25898.1| hypothetical protein COCSUDRAFT_52611 [Coccomyxa subellipsoidea
C-169]
Length = 371
Score = 479 bits (1233), Expect = e-132, Method: Compositional matrix adjust.
Identities = 240/371 (64%), Positives = 285/371 (76%), Gaps = 2/371 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ENGKAQAANFPFCTIEPNVGIVAVPD RL LS +SK
Sbjct: 1 MSLKTGIVGLPNVGKSTLFNAICENGKAQAANFPFCTIEPNVGIVAVPDSRLETLSNISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ VP SVEFVDIAGLVKGAS+GEGLGN+FL++IRE D++ QVVRCFED +++HV GKV
Sbjct: 61 SKAIVPTSVEFVDIAGLVKGASKGEGLGNQFLANIRECDALAQVVRCFEDENVIHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS-KLKDAEKAALEKIQQALMDGK 233
DP D DVIN EL +D+ QIEKR+++L+KG+AK + + EKAAL +I +AL
Sbjct: 121 DPVEDTDVINFELALADITQIEKRLQRLEKGRAKTKEEIASNEVEKAALSRIVEALDQNI 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 292
PAR+V L E ++ L LLTMKP+IY ANV ESDLAD G SN V + A+
Sbjct: 181 PARAVQLTADESVLVRGLQLLTMKPMIYAANVNESDLADQGSSNTFVQALRKKAAQENCD 240
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SAQVEAEL EL E EYL SLG SE GL +LIR+ Y LGL TYFT+G +ET+A
Sbjct: 241 VIIVSAQVEAELRELDPVEAAEYLESLGASEGGLASLIRTAYRQLGLLTYFTTGVQETRA 300
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTIR GMTAP+AAGVIHSDFE+GFI+AETV YDD V+AGSL A+E G LR EGK+Y+V
Sbjct: 301 WTIRKGMTAPEAAGVIHSDFERGFIKAETVGYDDLVSAGSLGQAKENGRLRLEGKEYLVN 360
Query: 413 EGDVMLFRFNV 423
EGDVM F+FNV
Sbjct: 361 EGDVMNFKFNV 371
>gi|159471011|ref|XP_001693650.1| predicted protein [Chlamydomonas reinhardtii]
gi|158283153|gb|EDP08904.1| predicted protein [Chlamydomonas reinhardtii]
Length = 415
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 244/398 (61%), Positives = 302/398 (75%), Gaps = 10/398 (2%)
Query: 32 LIGVLGITTTSSRRRFSSASK-----ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN 86
L+ + IT T S R + S+ +L+AGIVGLPNVGKSTLFNA+VENGKAQAAN
Sbjct: 22 LLHRVSITATPSLVRPGAGSRGFRTTTVAALQAGIVGLPNVGKSTLFNALVENGKAQAAN 81
Query: 87 FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFL 146
FPFCTIEPNVGIV V DPRL LS +S S+ +PA+VEFVDIAGLVKGAS+GEG+GN+FL
Sbjct: 82 FPFCTIEPNVGIVQVEDPRLAQLSAISGSKDLIPATVEFVDIAGLVKGASKGEGMGNQFL 141
Query: 147 SHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206
++IR D+I QVVRCFED+DIVHV DP D+DVINLEL +DL+ I KR E+L+KGK
Sbjct: 142 TNIRNTDAICQVVRCFEDDDIVHV----DPLDDIDVINLELALADLEVISKRQERLRKGK 197
Query: 207 AKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVA 266
Q++ + E +AL+KIQ A+ GK AR+ L E ++K L LLT+KP+IY ANV
Sbjct: 198 KAADQAERDELELSALDKIQAAIEAGKGARTAQLTKDEAVAVKGLGLLTLKPLIYAANVM 257
Query: 267 ESDLADPGSN-PHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESG 325
E DLAD G+N HV + A + V +SA+VEAEL ELP EE E+LASLGV++ G
Sbjct: 258 EDDLADQGANNTHVQALRKRAVEEGVQVVVVSAKVEAELNELPKEEAKEWLASLGVTDGG 317
Query: 326 LGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYD 385
L +L+R+TYS LGL+TYFT+GEKET+AWTIR GMTAPQAAGVIH+DFEKGFIRAET+A++
Sbjct: 318 LSSLVRATYSTLGLQTYFTTGEKETRAWTIRKGMTAPQAAGVIHTDFEKGFIRAETIAFN 377
Query: 386 DFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
DFV + ++E G LR EGK+Y+VQEGDV+LFRFNV
Sbjct: 378 DFVKNKGYSGSKEAGALRLEGKEYVVQEGDVLLFRFNV 415
>gi|428226882|ref|YP_007110979.1| GTP-binding protein YchF [Geitlerinema sp. PCC 7407]
gi|427986783|gb|AFY67927.1| GTP-binding protein YchF [Geitlerinema sp. PCC 7407]
Length = 364
Score = 478 bits (1231), Expect = e-132, Method: Compositional matrix adjust.
Identities = 239/368 (64%), Positives = 290/368 (78%), Gaps = 6/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLAVLAKISASE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+E+R+++++K + SK E LEKI L +GK AR
Sbjct: 122 VRDIEVINLELALADLSQVERRIDRIRK---QARSSKEAQTELTILEKIAAVLNEGKAAR 178
Query: 237 -SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
+ E I+ L LLT KPIIY ANVAE DLA N V +V +A + V
Sbjct: 179 HVELHPEEEEPLIRALGLLTRKPIIYAANVAEDDLAS--GNEWVEQVRAIAGQENAQVVI 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
+SAQVE+EL E+P EER ++L SLGVSE GL +LIR+TY LLGLRTYFT+G KET+AWTI
Sbjct: 237 VSAQVESELVEIPIEERADFLESLGVSEGGLQSLIRATYELLGLRTYFTTGPKETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
AGMTAPQAAGVIH+DFE+GFIRAETVAY D V++G++A A+EKGL+RSEGK+Y+VQEGD
Sbjct: 297 HAGMTAPQAAGVIHTDFERGFIRAETVAYSDLVSSGAMAGAKEKGLVRSEGKEYVVQEGD 356
Query: 416 VMLFRFNV 423
VMLFRFNV
Sbjct: 357 VMLFRFNV 364
>gi|22299130|ref|NP_682377.1| GTP-dependent nucleic acid-binding protein EngD
[Thermosynechococcus elongatus BP-1]
gi|22295312|dbj|BAC09139.1| tll1587 [Thermosynechococcus elongatus BP-1]
Length = 363
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 287/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL VL+ +S+S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDERLEVLAKISQSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED+DIVHV G+V+P
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDDIVHVAGRVNP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+ VINLEL +DL QIEKR+E+ +K ++++ E ALEK+ L +G+PAR
Sbjct: 122 VEDIAVINLELALADLAQIEKRIERTRKAARSQKEAQI---ELTALEKLLGVLNEGQPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L + E +I+ L LLT KP+IY ANVAE DLA N V +A + V +
Sbjct: 179 LCQLTEEEEAAIRFLGLLTRKPVIYAANVAEEDLAT--GNEWTAAVQEIAKQEGAEVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL +LP +R EYLASLGV E GL +LIRSTY LLGL+T+FT+G KET+AWTI
Sbjct: 237 SAQVEAELVDLPEGDRAEYLASLGVREGGLRSLIRSTYKLLGLQTFFTTGPKETRAWTIP 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AG APQAAGVIHSDFE+GFIRAETV+YDD VA S+ A+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGAKAPQAAGVIHSDFERGFIRAETVSYDDLVACQSMTVAKEKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|291565998|dbj|BAI88270.1| probable GTP-binding protein [Arthrospira platensis NIES-39]
Length = 363
Score = 477 bits (1228), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 289/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q+E+R+E+ +K +++L E ALEKI L +GK AR
Sbjct: 122 VRDIEIINLELALADLSQVERRIERTRKQARTSKEAQL---ELGALEKIAAVLNEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +AS + V I
Sbjct: 179 LVDLSEEETEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIASQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 237 SAQVESELVELSEAEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ A++KGL+RSEGK+YIVQEGDV
Sbjct: 297 EGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNGAKDKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|16330542|ref|NP_441270.1| GTP-dependent nucleic acid-binding protein EngD [Synechocystis sp.
PCC 6803]
gi|383322283|ref|YP_005383136.1| hypothetical protein SYNGTI_1374 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|383325452|ref|YP_005386305.1| hypothetical protein SYNPCCP_1373 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|383491336|ref|YP_005409012.1| hypothetical protein SYNPCCN_1373 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|384436603|ref|YP_005651327.1| hypothetical protein SYNGTS_1374 [Synechocystis sp. PCC 6803]
gi|451814700|ref|YP_007451152.1| hypothetical protein MYO_113860 [Synechocystis sp. PCC 6803]
gi|1653033|dbj|BAA17950.1| sll0245 [Synechocystis sp. PCC 6803]
gi|339273635|dbj|BAK50122.1| hypothetical protein SYNGTS_1374 [Synechocystis sp. PCC 6803]
gi|359271602|dbj|BAL29121.1| hypothetical protein SYNGTI_1374 [Synechocystis sp. PCC 6803
substr. GT-I]
gi|359274772|dbj|BAL32290.1| hypothetical protein SYNPCCN_1373 [Synechocystis sp. PCC 6803
substr. PCC-N]
gi|359277942|dbj|BAL35459.1| hypothetical protein SYNPCCP_1373 [Synechocystis sp. PCC 6803
substr. PCC-P]
gi|407958465|dbj|BAM51705.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7613]
gi|451780669|gb|AGF51638.1| hypothetical protein MYO_113860 [Synechocystis sp. PCC 6803]
Length = 363
Score = 476 bits (1224), Expect = e-131, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 298/367 (81%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL L+ +S+S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDDRLGKLAEISQSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KVVPTRMEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+VI+LELV +DL Q+EKR+E+ +K +A+ ++ L+ E A LE++ AL +G PAR
Sbjct: 122 VRDVEVIDLELVLADLAQVEKRLERSRK-QARGNKDLLE--EVAILERLVAALNEGIPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L E++ IK L LLT+KPIIY NV E DLA G N V +V +A+ ++ V I
Sbjct: 179 RVGLTAEEQELIKSLGLLTLKPIIYATNVTEDDLA--GGNDWVEQVKAIAAKDEAKVVVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP EER ++LASLGV+E GL +LIR+TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVELPEEERQDFLASLGVTEGGLKSLIRATYELLGLRTYLTTGPQETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIH+DFE+GFIRAETVAY+D ++ GS+ A+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 SGMKAPQAAGVIHTDFERGFIRAETVAYEDLISCGSMQGAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|254413674|ref|ZP_05027444.1| GTP-binding protein YchF [Coleofasciculus chthonoplastes PCC 7420]
gi|196179781|gb|EDX74775.1| GTP-binding protein YchF [Coleofasciculus chthonoplastes PCC 7420]
Length = 363
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 231/367 (62%), Positives = 292/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDERLSVLAKISTSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D +I+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDENIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+DVINLEL +DL Q+E+RME+ +K +++L E ALEK+ L +GK AR
Sbjct: 122 VRDIDVINLELALADLAQVERRMERTRKQARTSKEAQL---ELEALEKLSAGLNEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+++L + E + +K L LL+ KPIIY ANV+E DLA N V +V +A+ + V +
Sbjct: 179 NISLTEDEAEVVKPLGLLSAKPIIYAANVSEDDLA--SGNEWVEQVRQVATAETAEVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP +ER ++L SLGV E GL +LIR+TY+LLGLRT+ T+G KET+AWTI
Sbjct: 237 SAQVESELVELPEDERGDFLESLGVEEGGLKSLIRATYNLLGLRTFLTTGPKETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAG IH+DFE+GFIRAETV YDD V +GS+ AA++KGL+R+EGK+Y+VQEGDV
Sbjct: 297 AGMKAPQAAGTIHTDFERGFIRAETVGYDDLVTSGSMNAAKDKGLVRAEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|409991137|ref|ZP_11274426.1| GTP-binding protein YchF [Arthrospira platensis str. Paraca]
gi|409938003|gb|EKN79378.1| GTP-binding protein YchF [Arthrospira platensis str. Paraca]
Length = 363
Score = 475 bits (1223), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/367 (64%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV+GASQGEGLGN+FLSHIREVD+I+QVVRCF+++DI+HV+G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVQGASQGEGLGNQFLSHIREVDAIVQVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q+E+R+E+ +K +++L E ALEKI L +GK AR
Sbjct: 122 VRDIEIINLELALADLSQVERRIERTRKQARTSKEAQL---ELGALEKIAAVLNEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L++ E ++IK L LLT KPIIY ANV+E DLA N V +V +A + V I
Sbjct: 179 LVDLSEEETEAIKGLGLLTRKPIIYAANVSEDDLAT--GNEWVEKVRAIACQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E+ ++L SLGV E GL +LI +TY LLGLRT+ T+G KET+AWTI
Sbjct: 237 SAQVESELVELSEAEKQDFLESLGVQEGGLKSLIAATYKLLGLRTFLTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM+APQAAGVIHSDFE+GFIRAETVAY D V GS+ A++KGL+RSEGK+YIVQEGDV
Sbjct: 297 EGMSAPQAAGVIHSDFERGFIRAETVAYQDLVTHGSMNGAKDKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|254424345|ref|ZP_05038063.1| GTP-binding protein YchF [Synechococcus sp. PCC 7335]
gi|196191834|gb|EDX86798.1| GTP-binding protein YchF [Synechococcus sp. PCC 7335]
Length = 363
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 293/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KAQAANFPFCTIEPNVG+VAVPD RL L+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAQAANFPFCTIEPNVGVVAVPDERLGTLADISSSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ PA VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCFE +DI+HV+G + P
Sbjct: 62 EVTPARVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIIHVVRCFESDDIIHVSGSIGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL SDL QIEKRME+++K + +++ AE LEK+Q L +GK AR
Sbjct: 122 LRDIEVINLELALSDLSQIEKRMERIRKQARNNKEAQ---AELDILEKLQPVLDEGKAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V L+D E IK L LLT KP+IY ANV+E DLA N V +V + A D + V +
Sbjct: 179 TVELDDDESLIIKPLGLLTRKPVIYAANVSEDDLAT--GNEWVEQVRSQAEDEDAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL E+P +ER ++L +LGV E GL +LIR+TY LLGLRTYFT+G +ET+AWTI+
Sbjct: 237 SAQVEAELLEIPEDERADFLEALGVEEGGLQSLIRATYDLLGLRTYFTTGPQETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIH+DFE+GFIRAETV Y+D V +GS+ AA+EKGL+RSEGK+Y V+EGDV
Sbjct: 297 AGMLAPQAAGVIHTDFERGFIRAETVGYEDLVTSGSMTAAKEKGLVRSEGKEYTVKEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|427739944|ref|YP_007059488.1| GTP-binding protein YchF [Rivularia sp. PCC 7116]
gi|427374985|gb|AFY58941.1| GTP-binding protein YchF [Rivularia sp. PCC 7116]
Length = 362
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 235/368 (63%), Positives = 295/368 (80%), Gaps = 9/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S ++
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISSAK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED+D++HV+G V P
Sbjct: 62 QIVPARVEFVDIAGLVKGASKGEGLGNQFLSNIRETDAIVHVVRCFEDDDVIHVSGTVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKA-KDSQSKLKDAEKAALEKIQQALMDGKP 234
D++VINLELV +DL Q+E+RME+ +K +A KD+Q E + LEK+ L +GK
Sbjct: 122 ARDIEVINLELVLADLAQVERRMERTRKQARANKDAQY-----EMSVLEKVAAELNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + L++ E + IK L LL+ K IIY ANV+E DL+ N +V +V +A + V
Sbjct: 177 VRQIQLSEEEAELIKPLTLLSAKKIIYAANVSEDDLST--GNKYVEQVREIAVKEDAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSGEKET+AWT
Sbjct: 235 IVSAQVESELIELSDEERADFLESLGVEEGGLKSLIRATYDLLGLRTYFTSGEKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I++GM+APQAAGVIHSDFEKGFIRAETV+Y+D VA+GSL++A+EKGL+R+EGK YIV+EG
Sbjct: 295 IKSGMSAPQAAGVIHSDFEKGFIRAETVSYEDLVASGSLSSAKEKGLVRAEGKAYIVKEG 354
Query: 415 DVMLFRFN 422
DVMLF N
Sbjct: 355 DVMLFLTN 362
>gi|302831940|ref|XP_002947535.1| hypothetical protein VOLCADRAFT_57264 [Volvox carteri f.
nagariensis]
gi|300267399|gb|EFJ51583.1| hypothetical protein VOLCADRAFT_57264 [Volvox carteri f.
nagariensis]
Length = 366
Score = 474 bits (1220), Expect = e-131, Method: Compositional matrix adjust.
Identities = 243/368 (66%), Positives = 292/368 (79%), Gaps = 3/368 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+VENGKAQAANFPFCTIEPNVGIV V DPRL LSG+S S+
Sbjct: 1 LQAGIVGLPNVGKSTLFNALVENGKAQAANFPFCTIEPNVGIVQVEDPRLKELSGISGSK 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA+VEFVDIAGLVKGAS+GEG+GN+FL++IR D+I QVVRCFED+DI+HV GKVDP
Sbjct: 61 EIIPATVEFVDIAGLVKGASKGEGMGNQFLTNIRNTDAICQVVRCFEDDDIIHVAGKVDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+DVINLEL +DL IEKR+E+LKKGK Q++ + E AAL KIQ A+ GK AR
Sbjct: 121 LDDIDVINLELALADLGVIEKRVERLKKGKKSGDQAERDELELAALAKIQAAIEAGKGAR 180
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNP-HVNEVMNLASDLQSGRVT 295
+ L E ++K L LLT+KP+IY ANV E DLAD G+N H V A++ V
Sbjct: 181 TAPLTRDEAAAVKGLGLLTLKPLIYAANVVEDDLADQGANNRHALRVR--AAEEGVSVVV 238
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
+SA+VEAEL ELP EE E+L SLGV + GL +L+R+TYS LGL+TYFT+GEKET+AWTI
Sbjct: 239 VSAKVEAELNELPKEEAREWLESLGVQDGGLSSLVRATYSTLGLQTYFTTGEKETRAWTI 298
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
R GMTAPQAAGVIH+DFEKGFIRAET+AY+D+V A+E G LR EGK+Y+V+EGD
Sbjct: 299 RKGMTAPQAAGVIHTDFEKGFIRAETIAYNDYVKYQGYTGAKEAGALRLEGKEYVVEEGD 358
Query: 416 VMLFRFNV 423
VMLFRFNV
Sbjct: 359 VMLFRFNV 366
>gi|119487016|ref|ZP_01620888.1| hypothetical protein L8106_18906 [Lyngbya sp. PCC 8106]
gi|119455945|gb|EAW37079.1| hypothetical protein L8106_18906 [Lyngbya sp. PCC 8106]
Length = 363
Score = 473 bits (1218), Expect = e-131, Method: Compositional matrix adjust.
Identities = 230/367 (62%), Positives = 289/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKATAANFPFCTIEPNVGVVAVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IR+VD+I+ VVRCFE++DI+HV+G +DP
Sbjct: 62 QIIPTRIEFVDIAGLVKGASQGEGLGNKFLANIRQVDAIIHVVRCFENDDIIHVSGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL QIE+R+++++K +++L E ALEK+ L +GK AR
Sbjct: 122 VRDIEIINLELGLADLSQIERRIDRVRKLARTSKEAQL---ELGALEKLTAVLNEGKSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L + E +++K L LLT KPIIY NV+E DLA N V +V +A+ + V I
Sbjct: 179 QADLTEEELEAVKVLELLTQKPIIYATNVSEEDLAT--GNDWVEKVREVATQENAQVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP EER ++L SLGV E GL +LI++TY LLGLRT+ T+G KET+AWTI+
Sbjct: 237 SAQVESELVELPPEERADFLESLGVKEGGLKSLIKATYQLLGLRTFLTTGPKETRAWTIQ 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM APQAAGVIH+DFE+GFIRAETVAY D V+ GS+ A+EKGL+RSEGK+Y VQEGDV
Sbjct: 297 VGMLAPQAAGVIHTDFERGFIRAETVAYQDLVSTGSMNGAKEKGLVRSEGKEYTVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|119510992|ref|ZP_01630113.1| hypothetical protein N9414_04185 [Nodularia spumigena CCY9414]
gi|119464337|gb|EAW45253.1| hypothetical protein N9414_04185 [Nodularia spumigena CCY9414]
Length = 363
Score = 473 bits (1217), Expect = e-131, Method: Compositional matrix adjust.
Identities = 244/369 (66%), Positives = 296/369 (80%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVGIV+VPD RL+VL+ ++ S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGIVSVPDERLNVLANIASSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE+ DI+HV G +DP
Sbjct: 62 QTIPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIIHVVRCFENEDIIHVAGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++INLEL SDL QIE+R+++ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLSDLAQIERRIDRTRK-QARTS----KDAQFEITVLEKLAAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+L + E + IK L LLT KPIIY ANV+E +LA N V +V +A+ + V
Sbjct: 177 VRQVSLAEEEAEIIKGLELLTNKPIIYAANVSEEELAT--GNDFVEKVRQVAATENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL ELP E++ ++L SLGV E GL +LIR+TY+LLGLRTYFTSG KET+AWT
Sbjct: 235 VVSAQVEAELVELPEEDKADFLESLGVKEGGLKSLIRATYTLLGLRTYFTSGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIH+DFE+GFIRAETV+Y+ V GSL AA+EKGL+RSEGK+YIVQEG
Sbjct: 295 INAGMSAPQAAGVIHTDFERGFIRAETVSYEALVTHGSLNAAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|428312089|ref|YP_007123066.1| GTP-binding protein YchF [Microcoleus sp. PCC 7113]
gi|428253701|gb|AFZ19660.1| GTP-binding protein YchF [Microcoleus sp. PCC 7113]
Length = 363
Score = 473 bits (1216), Expect = e-130, Method: Compositional matrix adjust.
Identities = 237/367 (64%), Positives = 296/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDERLQVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 QIVPTRVEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL SDL Q+++R+++ +K + ++++ E ALE++ AL +G+PAR
Sbjct: 122 VRDIEVINLELALSDLAQVDRRIDRTRKQARTNKEAQI---ELGALEQLSAALNEGQPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
VTL + E +S+K L LLT KP+IY ANV+E DLA N V +V +A + V +
Sbjct: 179 QVTLTEEEVESVKVLGLLTAKPVIYAANVSEDDLA--SGNDWVEQVRQVAVTDNAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP EER ++LASLGV E GL +LIR+TY LLGLRT+ T+G KET+AWTI+
Sbjct: 237 SAQVESELVELPEEERGDFLASLGVEEGGLKSLIRATYELLGLRTFLTTGPKETRAWTIQ 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAG IH+DFE+GFIRAETVAY+D VA GS+ A+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMKAPQAAGAIHTDFERGFIRAETVAYNDLVATGSMNGAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|67923117|ref|ZP_00516607.1| Conserved hypothetical protein 92:GTP-binding [Crocosphaera
watsonii WH 8501]
gi|67855015|gb|EAM50284.1| Conserved hypothetical protein 92:GTP-binding [Crocosphaera
watsonii WH 8501]
Length = 363
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/370 (63%), Positives = 293/370 (79%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLAVLAELSQSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRMEFVDIAGLVQGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
D++VINLEL +DL Q EKR+E+++ KGK K+ Q ++ ALEKI AL +G
Sbjct: 122 ARDIEVINLELALADLTQTEKRLERVRKQVKGK-KEGQEEI-----PALEKILAALNEGM 175
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L + E D IK L LLT KPIIY ANV+E DLA N V V +A+ ++
Sbjct: 176 GARHVELTEEEEDLIKSLGLLTRKPIIYAANVSEDDLAT--GNEWVEAVRKIATADKAKV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVE+EL E+P EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AW
Sbjct: 234 VIVSAQVESELVEIPEEEKADYLEALGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGM APQAAGVIH+DFEKGFIRAETV+Y+D VA ++ A+EKGL+RSEGK+Y+VQE
Sbjct: 294 TILAGMKAPQAAGVIHTDFEKGFIRAETVSYEDLVACKTMTVAKEKGLVRSEGKEYVVQE 353
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 354 GDVVLFRFNV 363
>gi|158335782|ref|YP_001516956.1| GTP-dependent nucleic acid-binding protein EngD [Acaryochloris
marina MBIC11017]
gi|158306023|gb|ABW27640.1| GTP-binding protein ychF [Acaryochloris marina MBIC11017]
Length = 363
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/367 (63%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +LS LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV G VDP
Sbjct: 62 KTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIE+RME+ KK + +++ AE LEK++ L G+PAR
Sbjct: 122 MRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQ---AELEILEKLRATLNAGQPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L+ E++ IK L LLT+KPIIY NV+E DLA N V +V +A+ + V +
Sbjct: 179 QAELSPEEKEVIKYLGLLTLKPIIYATNVSEDDLAT--GNKWVEQVRGIATAESAETVIM 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L +LGV E GL +LI +TY LLGLRTYFTSG +E++AWTI
Sbjct: 237 SAQVESELVELTDEERHDFLEALGVEEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIP 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAGVIH+DFE+GFIRAETV Y D V GSL AA+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 IGTKAPQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|428215893|ref|YP_007089037.1| GTP-binding protein YchF [Oscillatoria acuminata PCC 6304]
gi|428004274|gb|AFY85117.1| GTP-binding protein YchF [Oscillatoria acuminata PCC 6304]
Length = 363
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 293/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KAQAANFPFCTIEPNVG+VAVPD RL +L+ LSKS+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAQAANFPFCTIEPNVGVVAVPDERLTMLAKLSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+ EGLGN+FLSHIR+VD+++QVVRCF+D +I+HV G VDP
Sbjct: 62 QIVPTRIEFVDIAGLVKGASKNEGLGNQFLSHIRQVDALVQVVRCFDDENIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL SDL QIE+RM++ +K + +L E AALEK+ AL +G+ AR
Sbjct: 122 VRDIEIINLELGLSDLAQIERRMDRTRKLARSSKEGQL---EMAALEKLAAALNEGQQAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V+L E + I+QL LLT KPIIY ANV+E DLA N V +V +AS + V I
Sbjct: 179 QVSLTAEETEVIQQLELLTSKPIIYAANVSEDDLAT--GNEWVEKVREIASVENAKVVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL +LP EER ++LASLGV E GL +LI +TY LLGLRT+ T+G KET+AWTIR
Sbjct: 237 SAQVESELVDLPEEERADFLASLGVEEGGLKSLIAATYQLLGLRTFLTTGPKETRAWTIR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM APQAAGVIH+DFE+GFIRAETVAY D V+ GS+ AA+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 EGMLAPQAAGVIHTDFERGFIRAETVAYQDLVSTGSMNAAKEKGLIRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|416395386|ref|ZP_11686327.1| GTP-binding and nucleic acid-binding protein YchF [Crocosphaera
watsonii WH 0003]
gi|357263120|gb|EHJ12166.1| GTP-binding and nucleic acid-binding protein YchF [Crocosphaera
watsonii WH 0003]
Length = 363
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/370 (63%), Positives = 293/370 (79%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLAVLAELSQSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRMEFVDIAGLVQGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
D++VINLEL +DL Q EKR+E+++ KGK K+ Q ++ ALEKI AL +G
Sbjct: 122 ARDIEVINLELALADLAQTEKRLERVRKQVKGK-KEGQEEI-----PALEKILAALNEGM 175
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L + E D IK L LLT KPIIY ANV+E DLA N V V +A+ ++
Sbjct: 176 GARHVELTEEEEDLIKSLGLLTRKPIIYAANVSEDDLAT--GNEWVEAVRKIATADKAKV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVE+EL E+P EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AW
Sbjct: 234 VIVSAQVESELVEIPEEEKADYLEALGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGM APQAAGVIH+DFEKGFIRAETV+Y+D VA ++ A+EKGL+RSEGK+Y+VQE
Sbjct: 294 TILAGMKAPQAAGVIHTDFEKGFIRAETVSYEDLVACKTMTVAKEKGLVRSEGKEYVVQE 353
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 354 GDVVLFRFNV 363
>gi|359461325|ref|ZP_09249888.1| GTP-binding protein YchF [Acaryochloris sp. CCMEE 5410]
Length = 363
Score = 470 bits (1210), Expect = e-130, Method: Compositional matrix adjust.
Identities = 234/367 (63%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +LS LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDQRLQILSELSNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV G VDP
Sbjct: 62 KTVPTRIEFVDIAGLVQGASQGEGLGNQFLANIREVDAIVHVVRCFDSDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIE+RME+ KK + +++ AE LEK++ L G+PAR
Sbjct: 122 VRDIEVINLELSLADLAQIERRMERTKKTARNNKEAQ---AELEILEKLRATLDAGQPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L+ E++ IK L LLT+KPIIY NV+E DLA N V +V +A+ + V +
Sbjct: 179 QADLSPEEKEVIKYLGLLTLKPIIYATNVSEDDLAT--GNKWVEQVRGIATAESAETVIM 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L +LGV E GL +LI +TY LLGLRTYFTSG +E++AWTI
Sbjct: 237 SAQVESELVELTDEERHDFLEALGVGEGGLTSLIHATYKLLGLRTYFTSGPQESRAWTIP 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAGVIH+DFE+GFIRAETV Y D V GSL AA+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 IGTKAPQAAGVIHTDFERGFIRAETVGYQDLVENGSLTAAKEKGLVRSEGKDYLVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|218437238|ref|YP_002375567.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp. PCC
7424]
gi|218169966|gb|ACK68699.1| GTP-binding protein YchF [Cyanothece sp. PCC 7424]
Length = 363
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/369 (63%), Positives = 294/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKLSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G V+P
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVEP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK--GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D++VINLELV +DL Q+EKR+++++K +KD+Q +L A LEKI L +GK
Sbjct: 122 VRDIEVINLELVLADLAQVEKRIDRVRKQAKTSKDAQVEL-----AILEKIIATLNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V L++ E + I+ L LL+ KPIIY ANV+E DLA N V +V +A ++ V
Sbjct: 177 ARQVELSEEEEELIQSLGLLSRKPIIYAANVSEDDLAT--GNEWVEQVRQIAQTEEAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVE+EL +L EE ++L SLGV E GL +LI++TY LLGLRTY T+G ET+AWT
Sbjct: 235 VVSAQVESELVDLSPEECKDFLESLGVEEGGLKSLIKATYELLGLRTYLTTGPTETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IRAGM APQAAGVIH+DFE+GFIRAETVAY D V G + AA+EKGL+RSEGK+Y+VQEG
Sbjct: 295 IRAGMKAPQAAGVIHTDFERGFIRAETVAYQDLVTCGGMTAAKEKGLVRSEGKEYVVQEG 354
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 355 DVMLFRFNV 363
>gi|78779617|ref|YP_397729.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9312]
gi|78713116|gb|ABB50293.1| conserved hypothetical protein [Prochlorococcus marinus str. MIT
9312]
Length = 363
Score = 469 bits (1206), Expect = e-129, Method: Compositional matrix adjust.
Identities = 232/367 (63%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFEDND++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIIHVVRCFEDNDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + + S+ K E A LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAK--EDALLEKIEEELHKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + A + + I
Sbjct: 179 SISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSKVQSFAGSENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGLLRSEGK+YIV EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|284928700|ref|YP_003421222.1| GTP-binding protein YchF [cyanobacterium UCYN-A]
gi|284809159|gb|ADB94864.1| GTP-binding protein YchF [cyanobacterium UCYN-A]
Length = 363
Score = 468 bits (1204), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/367 (62%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGLVSVPDERLKVLAELSKSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P VEFVDIAGLVKGA+QGEGLGNKFL++IREVD+I+ VVRCF+D+DI+HV+G V P
Sbjct: 62 KILPTRVEFVDIAGLVKGAAQGEGLGNKFLANIREVDAIVHVVRCFDDDDIIHVSGSVSP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I+LEL +DL Q+EKR+ +LKK K S K + E + LEK L G P R
Sbjct: 122 TRDIETIDLELALADLSQVEKRLTRLKKQK---SNQKEEQEEISILEKFTIQLNKGMPVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ L + ER IK L LLT+KP+IY ANV+E DL+ N V EV N AS+ + + +
Sbjct: 179 YLQLTEEERVLIKPLELLTLKPVIYAANVSEDDLS--SENDWVQEVRNFASNSHAKVIVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL E+ EE++E+L +LGVSE GL LI++ Y LLGLRTY T+G KET+AWTI
Sbjct: 237 SAQVESELIEISDEEKLEFLNALGVSEGGLKLLIKAVYDLLGLRTYLTTGPKETRAWTIY 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAET++Y D V ++ A+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGMKAPQAAGVIHSDFERGFIRAETISYKDLVFCKNITLAKEKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 ILFRFNV 363
>gi|157413677|ref|YP_001484543.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9215]
gi|157388252|gb|ABV50957.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9215]
Length = 363
Score = 467 bits (1202), Expect = e-129, Method: Compositional matrix adjust.
Identities = 231/367 (62%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLKELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + + S+ K E LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAK--EDTLLEKIEEKLQKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + AS + + I
Sbjct: 179 SISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSKVQSFASSENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEPEDKKDYLMGLGVKEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGLLRSEGK+YIV EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|87124842|ref|ZP_01080690.1| hypothetical protein RS9917_01432 [Synechococcus sp. RS9917]
gi|86167721|gb|EAQ68980.1| hypothetical protein RS9917_01432 [Synechococcus sp. RS9917]
Length = 363
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 243/367 (66%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPDPRL LS LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDPRLQQLSDLSGSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPARIEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL Q+EKR E+LKK +++++D AALE+IQ L G AR
Sbjct: 122 ARDAEVINLELGLADLAQVEKRRERLKKQMRTSKEAQVED---AALERIQAVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L + E IK L LLT KPIIY NV+E DLA PG N EV+ LA+ + V I
Sbjct: 179 SVALTEEEAAMIKPLGLLTAKPIIYATNVSEDDLA-PG-NRFCEEVVALAASEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELIELGDEERADYLEGLGVSEGGLQSLIRATYNLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ + + AGSLA AR KG LRSEGK+Y+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGWQKLLEAGSLAEARNKGWLRSEGKEYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|124022580|ref|YP_001016887.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9303]
gi|123962866|gb|ABM77622.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9303]
Length = 375
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/373 (64%), Positives = 289/373 (77%), Gaps = 5/373 (1%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
++ + L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +L
Sbjct: 8 ARFAPMLKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVAVPDERLQLLC 67
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
LSKS++ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCFED D++HV
Sbjct: 68 DLSKSKELIPTRMEFVDIAGLVKGASEGEGLGNKFLANIREVDAIVHVVRCFEDEDVIHV 127
Query: 171 NGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
+G VDP D +VINLEL F+DL QIEKR +LKK + ++L+D AALE+IQ L
Sbjct: 128 SGSVDPSRDAEVINLELGFADLSQIEKRRLRLKKQTRTSNDAQLED---AALERIQSVLE 184
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
G AR+V L+D E IK L LLT KPIIY NV+E DLA G N + EV +LA+
Sbjct: 185 QGGAARAVELSDEEAKMIKPLGLLTAKPIIYATNVSEDDLA--GGNAYCEEVTSLATRED 242
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISAQVEAEL EL ER++YL LGVSE GL +LI++TY LLGLRTYFT+GEKET
Sbjct: 243 AECVRISAQVEAELIELGEAERIDYLEGLGVSEGGLKSLIKATYRLLGLRTYFTTGEKET 302
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT +AGMTAPQ AGVIH+DFE+GFIRA+T+AY + AGS A AR KG LRSEGKDY+
Sbjct: 303 RAWTFKAGMTAPQTAGVIHTDFERGFIRAQTIAYQKLLEAGSFAEARNKGWLRSEGKDYV 362
Query: 411 VQEGDVMLFRFNV 423
V EGDVM F FNV
Sbjct: 363 VAEGDVMEFLFNV 375
>gi|332710494|ref|ZP_08430441.1| GTP-binding protein YchF [Moorea producens 3L]
gi|332350825|gb|EGJ30418.1| GTP-binding protein YchF [Moorea producens 3L]
Length = 363
Score = 466 bits (1199), Expect = e-128, Method: Compositional matrix adjust.
Identities = 233/367 (63%), Positives = 292/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S+S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVAVPDQRLQVLAKISESE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+E+R+E+ +K + +K+ E ALE + L +GK R
Sbjct: 122 ARDIEVINLELALADLGQVERRIERTRKQARSNKDAKM---ELDALETLSAGLNEGKLVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++L + E +S+KQL LLT KP+IY ANV+E DLA N V +V +A+ + V +
Sbjct: 179 QISLTEEEAESVKQLGLLTSKPVIYAANVSEDDLAT--GNDWVEQVRQIAATEDAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP E+R ++L SLGV E GL +LI +TY LLGLRT+ T+G +ET+AWTI
Sbjct: 237 SAQVESELIELPEEDREDFLQSLGVEEGGLKSLIGATYELLGLRTFLTTGPQETRAWTIA 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAG IHSDFE+GFIRAET+AY D VAAG++ AA+EKGL+RSEGKDY+VQEGDV
Sbjct: 297 AGMKAPQAAGTIHSDFERGFIRAETIAYGDLVAAGAMTAAKEKGLVRSEGKDYVVQEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|78184272|ref|YP_376707.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
CC9902]
gi|78168566|gb|ABB25663.1| conserved hypothetical protein [Synechococcus sp. CC9902]
Length = 363
Score = 466 bits (1198), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLQLLTDLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 NTVPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK ++++++D AALE+IQQ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSTEAQVED---AALERIQQVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV + E IK L LLT KPIIY NV+E DLAD N + +EVM +A + V I
Sbjct: 179 SVEITAEEEGMIKPLGLLTAKPIIYATNVSEDDLAD--GNRYCSEVMAVAEQEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELVELGDEERADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GMTAPQ AGVIH+DFE+GFIRA+T+ + + AGSL AR KG LRSEGKDY+V EGDV
Sbjct: 297 SGMTAPQTAGVIHTDFERGFIRAQTIGCEKLLEAGSLVEARNKGWLRSEGKDYVVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|427714288|ref|YP_007062912.1| GTP-binding protein YchF [Synechococcus sp. PCC 6312]
gi|427378417|gb|AFY62369.1| GTP-binding protein YchF [Synechococcus sp. PCC 6312]
Length = 363
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 234/367 (63%), Positives = 289/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LR+GIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPDPRL VL+ +S+S
Sbjct: 2 LRSGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDPRLQVLATISQSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIE+R+E+ +K SK E A LEK+ + L +G+PAR
Sbjct: 122 SRDMEVINLELALADLSQIERRIERTRKTA---RNSKEAQVELAGLEKLLETLNNGEPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
L + E + + L LLT KP+IY ANVAE++LA N V +V +A + V +
Sbjct: 179 KTQLTEDEAAATQFLGLLTSKPVIYAANVAETELAS--GNEWVEQVKTIAQAEGAQVVVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YLASLGV+E GL +LI++TY LLGLRT+FT+G KET+AWTI
Sbjct: 237 SAQVEAELVELSPEERADYLASLGVTEGGLQSLIQATYDLLGLRTFFTTGPKETRAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+DFE+GFIRAETVAY D V GS+ AA+EKGL+RSEGK+Y+V+EGDV
Sbjct: 297 QGDKAPQAAGTIHTDFERGFIRAETVAYQDLVTTGSMTAAKEKGLVRSEGKEYVVEEGDV 356
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 357 MLFRFNV 363
>gi|260434517|ref|ZP_05788487.1| GTP-binding protein YchF [Synechococcus sp. WH 8109]
gi|260412391|gb|EEX05687.1| GTP-binding protein YchF [Synechococcus sp. WH 8109]
Length = 363
Score = 465 bits (1196), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 286/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDRLTELSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D AALE+IQ L +G AR
Sbjct: 122 SRDAEVINLELGLADLAQIEKRRERLKKQMRTSKEAQVED---AALERIQAVLENGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV LND E IK L LLT KPIIY NV+E DLA+ N EV+ LA+ + V I
Sbjct: 179 SVDLNDEEAAMIKPLGLLTAKPIIYATNVSEDDLAE--GNTFCTEVVELAAKEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EE +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKETKAWT +
Sbjct: 237 SAQVEAELVELGDEETADYLEGLGVTEGGLQSLIRATYRLLGLRTYFTTGEKETKAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGSLA AR KG LRSEGK+Y+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGWEKLLEAGSLAEARNKGWLRSEGKEYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|33863425|ref|NP_894985.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9313]
gi|33640874|emb|CAE21330.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9313]
Length = 363
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +L LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVAVPDERLQLLCDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCFED D++HV+G VDP
Sbjct: 62 EMIPTRMEFVDIAGLVKGASEGEGLGNKFLANIREVDAIVHVVRCFEDEDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL F+DL QIEKR +LKK + ++ +D AALE+IQ L G AR
Sbjct: 122 SRDAEVINLELGFADLSQIEKRRLRLKKQTRTSNDAQFED---AALERIQSVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V L+D E IK L LLT KPIIY NV+E DLA G N + EV LA+ + V I
Sbjct: 179 AVELSDEEAKIIKPLGLLTAKPIIYATNVSEDDLA--GGNAYCEEVTTLATREGAECVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL ER++YL LGVSE GL +LI++TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELIELGEAERIDYLEGLGVSEGGLKSLIKATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQ AGVIH+DFE+GFIRA+T+AY + AGS A AR KG LRSEGKDY+V+EGDV
Sbjct: 297 AGMTAPQTAGVIHTDFERGFIRAQTIAYQKLLEAGSFAEARNKGWLRSEGKDYVVEEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|427707311|ref|YP_007049688.1| GTP-binding protein YchF [Nostoc sp. PCC 7107]
gi|427359816|gb|AFY42538.1| GTP-binding protein YchF [Nostoc sp. PCC 7107]
Length = 363
Score = 464 bits (1195), Expect = e-128, Method: Compositional matrix adjust.
Identities = 248/369 (67%), Positives = 294/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA+AANFPFCTIEPNVG+VAVPD RL+VLS +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKAEAANFPFCTIEPNVGVVAVPDERLNVLSQISGSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QIVPARVEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++INLEL +DL QIE+R+E+ +K +A+ S KDA E LEK+ AL +GK
Sbjct: 122 ARDIEIINLELGLADLGQIERRIERTRK-QARTS----KDAQFEITVLEKLIAALNEGKS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V+LN+ E I+ L LLT KPIIY ANV+E DLA N V V +A+ + V
Sbjct: 177 VRQVSLNEEESAIIQGLGLLTSKPIIYAANVSEDDLAT--GNEFVERVRPIAAQENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL EL EE+ ++L SLG E GL +LIR+TY+LLGLRTYFTSG KET+AWT
Sbjct: 235 IVSAQVEAELVELAEEEKADFLESLGAKEGGLKSLIRATYTLLGLRTYFTSGPKETRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAETVAY+D VA GS+ A+EKGL+RSEGK+YIVQEG
Sbjct: 295 IHAGMSAPQAAGVIHSDFERGFIRAETVAYNDLVANGSMKGAKEKGLVRSEGKEYIVQEG 354
Query: 415 DVMLFRFNV 423
DV+LF FNV
Sbjct: 355 DVLLFLFNV 363
>gi|116073126|ref|ZP_01470388.1| hypothetical protein RS9916_31787 [Synechococcus sp. RS9916]
gi|116068431|gb|EAU74183.1| hypothetical protein RS9916_31787 [Synechococcus sp. RS9916]
Length = 363
Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 286/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSSSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ETIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D AALE+IQ+ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQVED---AALERIQEVLEKGGSAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L+D E IK L LLT KPIIY NV+E DLA G N EV+ LA+ + V I
Sbjct: 179 SVALSDDEAAMIKPLGLLTAKPIIYATNVSEDDLA--GGNRFCEEVVALAAKEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELIELGDEERADYLEGLGVSEGGLQSLIRATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSLA AR KG LRSEGK+Y+V EGDV
Sbjct: 297 AGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLAEARNKGWLRSEGKEYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|443323940|ref|ZP_21052908.1| putative GTPase, probable translation factor [Xenococcus sp. PCC
7305]
gi|442796273|gb|ELS05575.1| putative GTPase, probable translation factor [Xenococcus sp. PCC
7305]
Length = 363
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 232/364 (63%), Positives = 281/364 (77%), Gaps = 5/364 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N +A AANFPFCTIEPNVG+V+VPD RL VL+ +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAQADAANFPFCTIEPNVGVVSVPDERLEVLAKISNSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIEKR+++++K K+ K AE LEK+ AL DGK R
Sbjct: 122 VRDIEVINLELSLADLSQIEKRLQRVRKQAKKE---KTAQAELDILEKLSVALNDGKSTR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V LN E IK L LLT KPIIY NVA+ DLA N V EV A + + V +
Sbjct: 179 QVELNKDEEAIIKPLGLLTRKPIIYATNVADDDLA--SGNKWVEEVKEFAINESALVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EE+ ++L SLGV+E GL +LI++TY LLGLRTY T+GE E++AWTI
Sbjct: 237 SAQVESELVELAEEEKQDFLESLGVTEGGLKSLIKATYELLGLRTYLTTGETESRAWTIT 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIH+DFEK FI+AET+ Y+DFV +GS A+EKGL+R EGKDY+VQEGDV
Sbjct: 297 AGMKAPQAAGVIHTDFEKKFIKAETIGYEDFVTSGSKGTAKEKGLIRFEGKDYVVQEGDV 356
Query: 417 MLFR 420
+ FR
Sbjct: 357 IEFR 360
>gi|123966535|ref|YP_001011616.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9515]
gi|123200901|gb|ABM72509.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9515]
Length = 363
Score = 464 bits (1193), Expect = e-128, Method: Compositional matrix adjust.
Identities = 229/367 (62%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RLH L+ LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDHRLHQLATLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED++++HV+GK+DP
Sbjct: 62 NVIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIIHVVRCFEDSEVIHVSGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + SK E A LEKI+ L G R
Sbjct: 122 LEDIEIINLELNLADLTQLQKRRERIKK---QVKTSKEAQQEDALLEKIEDKLQKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L+ E IKQL LT KPIIY N+ E+DLA+ N ++V LA + + I
Sbjct: 179 SISLSVEENLMIKQLGFLTAKPIIYATNLNENDLAE--GNNLSSKVQMLAKTENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LI+STY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELGPEDKKDYLIGLGVEEGGLKSLIKSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + +GS+A A+ KGLLRSEGK+Y+V EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYKSLLESGSMANAKNKGLLRSEGKEYVVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|428773522|ref|YP_007165310.1| GTP-binding protein YchF [Cyanobacterium stanieri PCC 7202]
gi|428687801|gb|AFZ47661.1| GTP-binding protein YchF [Cyanobacterium stanieri PCC 7202]
Length = 364
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 287/367 (78%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAVV N KA AANFPFCTIEPNVG+VAVPD RL VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVVANAKADAANFPFCTIEPNVGVVAVPDERLDVLAKISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+ +DI+HV+G VDP
Sbjct: 62 KVVPTRIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIIHVVRCFDSDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+E+R+E+LKK +AK S +K AE LEKI L +GK R
Sbjct: 122 VRDMEVINLELSLADLTQVERRVERLKK-QAK-SNNKEAVAEMEILEKILPILNEGKAVR 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ E + IK L LLT KP+IY ANV++ DLA N V V A+ + V +
Sbjct: 180 ELEFTPEEEEIIKPLGLLTSKPVIYAANVSDEDLAT--GNQWVEGVKAEATKQNAMVVIV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EE+ E+L SLGV E GL +LIR+TY LLGLRTY T+GE ET+AWTI
Sbjct: 238 SAQVESELVELGPEEKAEFLESLGVEEGGLQSLIRATYELLGLRTYLTTGETETRAWTII 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAY+D V+ GS+ AA+EKGL+R+EGK+Y+VQEGDV
Sbjct: 298 AGMKAPQAAGVIHSDFERGFIRAETVAYNDLVSCGSMGAAKEKGLVRAEGKEYVVQEGDV 357
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 358 LLFRFNV 364
>gi|428315753|ref|YP_007113635.1| GTP-binding protein YchF [Oscillatoria nigro-viridis PCC 7112]
gi|428239433|gb|AFZ05219.1| GTP-binding protein YchF [Oscillatoria nigro-viridis PCC 7112]
Length = 363
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 239/367 (65%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPN GIVAVPD RL+VLS +S S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNTGIVAVPDERLNVLSNISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR VD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPTRMEFVDIAGLVKGASQGEGLGNQFLSHIRAVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D+INLEL+ +DL QIE+R+++ +K + +++ AE LEK+ L GKPAR
Sbjct: 122 IRDIDIINLELILADLAQIERRLDRTRKLARNNKEAQ---AEVDVLEKLVAVLNAGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
D E + +K L LLT KPIIY ANV+E DLA N +V +V +A+ + V +
Sbjct: 179 QYNFTDEEAELVKGLELLTNKPIIYAANVSEDDLAT--GNSYVEQVREVAAKENAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 237 SAQVESELVELSEEERTDFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAY+D VA G++ AA+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMLAPQAAGVIHSDFERGFIRAETVAYEDLVATGAMNAAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|116071083|ref|ZP_01468352.1| hypothetical protein BL107_15595 [Synechococcus sp. BL107]
gi|116066488|gb|EAU72245.1| hypothetical protein BL107_15595 [Synechococcus sp. BL107]
Length = 363
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 239/367 (65%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L+ LSKSQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLQLLTDLSKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 NTVPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGTVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK ++++++D AAL +IQ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSTEAQVED---AALARIQAVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV + E IK L LLT KPIIY NV+E DLAD N + +EV LA + V I
Sbjct: 179 SVEITAEEEGMIKPLGLLTAKPIIYATNVSEDDLAD--GNAYCSEVTALAEQEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELVELGDEERADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL AR KG LRSEGKDY+V EGDV
Sbjct: 297 SGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLDAGSLVEARNKGWLRSEGKDYVVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|255078490|ref|XP_002502825.1| predicted protein [Micromonas sp. RCC299]
gi|226518091|gb|ACO64083.1| predicted protein [Micromonas sp. RCC299]
Length = 373
Score = 462 bits (1189), Expect = e-127, Method: Compositional matrix adjust.
Identities = 230/373 (61%), Positives = 284/373 (76%), Gaps = 4/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+VEN A+AAN+PFCTIEPN GIV VPD RL L+ +S
Sbjct: 1 MALKTGIVGLPNVGKSTLFNALVENSTAEAANYPFCTIEPNSGIVPVPDERLQALAAISG 60
Query: 115 SQK--AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+ K VP +VEFVDIAGLVKGA+ G GLGNKFL++IRE D+I+ VVRCF+D+D++HV+G
Sbjct: 61 TSKDNIVPTTVEFVDIAGLVKGAADGAGLGNKFLANIRECDAIVHVVRCFDDDDVIHVDG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA-EKAALEKIQQALMD 231
KVDP SD+ VIN EL +D+ QIEKR+E+L KG+AK + K +A E+ AL KI+ L +
Sbjct: 121 KVDPLSDISVINFELALADMAQIEKRLERLNKGRAKSNADKEAEAGERDALAKIKVLLEE 180
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQ 290
GKPAR LN+ E +K L LLT KP IY ANV E DLAD G SNPHV V A +
Sbjct: 181 GKPARLADLNEDEWALVKDLYLLTAKPTIYAANVNEDDLADKGGSNPHVAVVREHAQEEG 240
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ ISAQVE+EL +L EER E+LA LG E GL +LIR+ Y L L+TYFT+GEKET
Sbjct: 241 AEVTIISAQVESELIKLDPEERDEFLADLGADEGGLQSLIRAAYKQLKLQTYFTTGEKET 300
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI+ G TAPQAAGVIH+DFEKGFI+AETV YDDF+ + A+EKG+ R EGKDY+
Sbjct: 301 RAWTIKEGFTAPQAAGVIHTDFEKGFIKAETVGYDDFIVNNGFSGAKEKGVWRLEGKDYV 360
Query: 411 VQEGDVMLFRFNV 423
V+EGDV++F+FNV
Sbjct: 361 VKEGDVLVFKFNV 373
>gi|428300391|ref|YP_007138697.1| GTP-binding protein YchF [Calothrix sp. PCC 6303]
gi|428236935|gb|AFZ02725.1| GTP-binding protein YchF [Calothrix sp. PCC 6303]
Length = 363
Score = 462 bits (1188), Expect = e-127, Method: Compositional matrix adjust.
Identities = 228/363 (62%), Positives = 289/363 (79%), Gaps = 5/363 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+VEN KA+AANFPFCT PN+GIV+VPD RL+VL+ +S ++
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVENAKAEAANFPFCTKNPNIGIVSVPDERLNVLAKISATK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGL+KGAS+GEG+GN FLS+IREVD+I+ +VRCF+++DI+HV+G VDP
Sbjct: 62 QIVPAQVEFVDIAGLIKGASKGEGMGNAFLSNIREVDAIVHMVRCFDNDDIIHVDGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q+EKR+E+ KK SK AE LEK+ L GK R
Sbjct: 122 VRDIEIINLELALADLGQVEKRIERTKK---LARTSKEAQAELVILEKLVVELNTGKSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ L E ++I L LLT KPII+ ANV+E DLA N +V +V +A+ + +
Sbjct: 179 QLGLTAEESETIAFLQLLTAKPIIFAANVSEDDLAT--GNEYVEKVRKVAAQENAQVSIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL +LPSEER ++LASLGV E GL +LIR+TY+LLGLRTYFT+GEKET+AWTI+
Sbjct: 237 SAQVESELIDLPSEERADFLASLGVEEGGLKSLIRATYTLLGLRTYFTTGEKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM+APQAAGVIHSDFE+ FIRAETVAY+D V+ GS+ AA+ KGL+RSEGK+YIV+EGDV
Sbjct: 297 AGMSAPQAAGVIHSDFERCFIRAETVAYEDLVSNGSMNAAKGKGLVRSEGKEYIVKEGDV 356
Query: 417 MLF 419
M+F
Sbjct: 357 MVF 359
>gi|334118705|ref|ZP_08492793.1| GTP-binding protein YchF [Microcoleus vaginatus FGP-2]
gi|333458935|gb|EGK87550.1| GTP-binding protein YchF [Microcoleus vaginatus FGP-2]
Length = 363
Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/367 (64%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPN GIVAVPD RL VLS +S S
Sbjct: 2 LTAGIVGLPNVGKSTLFNALVANAKATAANFPFCTIEPNTGIVAVPDERLKVLSNISNSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGN+FLSHIR VD+I+ VVRCFE++DI+HV G VDP
Sbjct: 62 QTVPTRMEFVDIAGLVKGASQGEGLGNQFLSHIRAVDAIVHVVRCFENDDIIHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D+INLEL+ +DL QIE+R+++ +K + +++ AE LEK+ L GKPAR
Sbjct: 122 IRDIDIINLELILADLAQIERRLDRTRKLARNNKEAQ---AEVDVLEKLVVVLNAGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ D E + +K L LLT KPIIY ANV++ DLA N +V +V +A+ + V +
Sbjct: 179 QYSFTDEEAELVKGLELLTNKPIIYAANVSDDDLAT--GNSYVEQVREVAAKENAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LIR+TY LLGLRTYFTSG KET+AWTI
Sbjct: 237 SAQVESELVELSEEERTDFLESLGVKEGGLKSLIRATYELLGLRTYFTSGPKETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETVAY+D VA G++ AA+EKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMLAPQAAGVIHSDFERGFIRAETVAYEDLVATGAMNAAKEKGLVRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|170078335|ref|YP_001734973.1| GTP-binding protein [Synechococcus sp. PCC 7002]
gi|169886004|gb|ACA99717.1| GTP-binding protein [Synechococcus sp. PCC 7002]
Length = 364
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 238/369 (64%), Positives = 293/369 (79%), Gaps = 8/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA AANFPFCTIEPNVG+VAVPD RL VL+ +SKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDGRLDVLADISKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D++VI+LEL+ +DL Q+EKR+++ + K ++S+ K+A E A LEKI L D +P
Sbjct: 122 IRDIEVISLELILADLAQVEKRLDRAR----KQAKSRAKEALLEVAVLEKILPVLEDARP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V L++ E +IK L LLT KP+IY NV+E DLAD N V +V LA + V
Sbjct: 178 AREVELDEEEELAIKALGLLTRKPVIYATNVSEEDLAD--GNAWVEQVRELAQQENAQVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL EL + E+ ++L SLGV E GL +LIR+TY LLGLRTYFT+G +ET+AWT
Sbjct: 236 VVSAQVEAELVELDAAEKKDFLESLGVEEGGLQSLIRATYELLGLRTYFTTGPEETRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I GM APQAAGVIH+DFE+GFIRAETVAY D V G++ AA+EKGL+R+EGK+Y+VQEG
Sbjct: 296 IHVGMKAPQAAGVIHTDFERGFIRAETVAYQDLVDCGAMPAAKEKGLVRAEGKEYLVQEG 355
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 356 DVMLFRFNV 364
>gi|33861694|ref|NP_893255.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus subsp. pastoris str. CCMP1986]
gi|33640062|emb|CAE19597.1| probable GTP-binding protein [Prochlorococcus marinus subsp.
pastoris str. CCMP1986]
Length = 363
Score = 461 bits (1185), Expect = e-127, Method: Compositional matrix adjust.
Identities = 225/367 (61%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGSLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED +++HV+GK+DP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDTEVIHVSGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + SK E + LEKI+ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK---QVKTSKEAAQEDSLLEKIEDELQKGLSIR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L D E IKQL LT KPI+Y N+ E+DLA+ N ++V + A+ + + I
Sbjct: 179 SISLTDEENLMIKQLGFLTAKPIVYATNLNENDLAE--GNDFSSKVQSFANSENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LI+STY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEPEDKKDYLMGLGVEEGGLKSLIKSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+ A+ KGLLRSEGK+Y+V EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIVNAKNKGLLRSEGKEYVVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|87302112|ref|ZP_01084937.1| hypothetical protein WH5701_07924 [Synechococcus sp. WH 5701]
gi|87283037|gb|EAQ74993.1| hypothetical protein WH5701_07924 [Synechococcus sp. WH 5701]
Length = 363
Score = 460 bits (1184), Expect = e-127, Method: Compositional matrix adjust.
Identities = 241/367 (65%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG+VAVPDPRL +LS +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGVVAVPDPRLKMLSDVSSSR 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGDVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D A L +IQ L G AR
Sbjct: 122 VRDAEVINLELGLADLGQIEKRRERLKKQARTSKEAQVED---AVLARIQAELEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V L + E +K L LLT KPIIY NV+E DLA NP V LA +G V I
Sbjct: 179 NVELGEEEAPMLKPLGLLTAKPIIYATNVSEDDLAQ--GNPFSRAVEELARKEGAGAVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL ER +YL LGVSE GL +LI +TY LLGLRTYFT+GEKET+AWTI
Sbjct: 237 SAQVEAELIELGEAERADYLEGLGVSEGGLQSLIHATYGLLGLRTYFTTGEKETRAWTIT 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+TVAY + AGSL AR +G LRSEGK+Y+VQEGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTVAYAQLLEAGSLPEARNRGWLRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|113953017|ref|YP_730143.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
CC9311]
gi|113880368|gb|ABI45326.1| GTP-binding protein YchF [Synechococcus sp. CC9311]
Length = 363
Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 ELIPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D ALE+IQQ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQVED---EALERIQQVLEAGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S+ L + E IK L LLT KPIIY NV+E DLA N + EV+ LA + V I
Sbjct: 179 SIELTEEEALMIKPLGLLTAKPIIYATNVSEDDLA--AGNAYCEEVVALAEKEGAESVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EE +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT R
Sbjct: 237 SAQVEAELVELGDEECADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTFR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL+ AR KG LRSEGKDY+V EGDV
Sbjct: 297 AGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLSEARNKGWLRSEGKDYLVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|33865238|ref|NP_896797.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
WH 8102]
gi|33638922|emb|CAE07219.1| probable GTP-binding protein [Synechococcus sp. WH 8102]
Length = 363
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 240/367 (65%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDQLTKLSSSI 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK + SK E AALE+IQ L DG AR
Sbjct: 122 ARDAEVINLELGLADLAQIEKRRERLKK---QMRTSKEAQQEDAALERIQTVLEDGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L + E IK L LLT KPIIY NV+E DLA+ N EV+NLA++ + V I
Sbjct: 179 SVELGEEEALMIKPLGLLTAKPIIYATNVSEEDLAE--GNAFCTEVINLAANEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL +ER +YL LGVSE GL +LI++TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELIELGDDERSDYLEGLGVSEGGLQSLIQATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGS A AR KG LRSEGKDY+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGWEKLIEAGSFAEARNKGWLRSEGKDYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|427704453|ref|YP_007047675.1| GTP-binding protein YchF [Cyanobium gracile PCC 6307]
gi|427347621|gb|AFY30334.1| GTP-binding protein YchF [Cyanobium gracile PCC 6307]
Length = 400
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 242/374 (64%), Positives = 288/374 (77%), Gaps = 5/374 (1%)
Query: 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVL 109
A IS L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG+VAVPD RL L
Sbjct: 32 APYISPMLKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGVVAVPDERLQKL 91
Query: 110 SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVH 169
S LS S++ VP VEFVDIAGLV+GASQGEGLGNKFL++IREVD+I+ VVRCFED+D++H
Sbjct: 92 SDLSSSKEIVPTRVEFVDIAGLVQGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIH 151
Query: 170 VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
V+G VDP D +VINLEL +DL QIEKR E+LKK + SK AE AL ++Q L
Sbjct: 152 VSGSVDPVRDAEVINLELGLADLAQIEKRRERLKK---QMRTSKEAAAEDGALARLQAEL 208
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
G R VTL + E+ ++ L LLT KPIIY NV+E DLA+ N V V +LA+
Sbjct: 209 EQGGAVRRVTLTEEEQSLVRNLGLLTGKPIIYATNVSEDDLAE--GNAWVAAVEDLAARE 266
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISAQVEAEL +L +EER +YLA LGVSE GL +LIR+TY LLGLRTYFT+GEKE
Sbjct: 267 GAEAVRISAQVEAELVDLAAEERADYLAGLGVSEGGLQSLIRATYRLLGLRTYFTTGEKE 326
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWTI AGMTAPQAAGVIH+DFE+GFIRA+T+AY + AG+L AR +G LRSEGK+Y
Sbjct: 327 TRAWTITAGMTAPQAAGVIHTDFERGFIRAQTIAYAQLLEAGTLGEARNRGWLRSEGKEY 386
Query: 410 IVQEGDVMLFRFNV 423
+V EGDVM F FNV
Sbjct: 387 VVAEGDVMEFLFNV 400
>gi|303283304|ref|XP_003060943.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457294|gb|EEH54593.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 371
Score = 459 bits (1181), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/371 (59%), Positives = 283/371 (76%), Gaps = 2/371 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+VEN A+AAN+PFCTIEPN GIV VPD RL L+ +S
Sbjct: 1 MALKTGIVGLPNVGKSTLFNALVENSTAEAANYPFCTIEPNSGIVPVPDDRLQALATISG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGA+ G GLGNKFL++IRE D+++ VVRCF+D++++HV+GKV
Sbjct: 61 TTNIVPTTCEFVDIAGLVKGAADGAGLGNKFLANIRECDAVVHVVRCFDDDNVIHVDGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK-DSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ VIN EL +DL QIE+R+E+L KG+AK +++ + + E+ AL K++ L DGK
Sbjct: 121 DPLEDIAVINFELALADLAQIERRLERLGKGRAKSNAEKEAEQGERDALAKLRVLLEDGK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSG 292
PAR +L + E +K L LLT KP +Y ANV E DLAD G SN HV V A SG
Sbjct: 181 PARLASLTEDEWALVKDLMLLTAKPCVYAANVNEEDLADAGASNVHVKAVRKHAETEGSG 240
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+SAQVE+EL +L EER E+LA LG E GL +LIR+ Y+ L L+TYFT+GEKET+A
Sbjct: 241 VTIVSAQVESELIKLDPEERAEFLADLGADEGGLKSLIRNAYTQLNLQTYFTTGEKETRA 300
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI+ G TAPQAAGVIH+DFEKGFI+AETV YD+F+A A A+EKG+ R EGKDY+V+
Sbjct: 301 WTIKRGFTAPQAAGVIHTDFEKGFIKAETVGYDEFIACEGFAGAKEKGVWRLEGKDYVVK 360
Query: 413 EGDVMLFRFNV 423
EGDV++F+FNV
Sbjct: 361 EGDVLVFKFNV 371
>gi|113475013|ref|YP_721074.1| GTP-dependent nucleic acid-binding protein EngD [Trichodesmium
erythraeum IMS101]
gi|110166061|gb|ABG50601.1| GTP-binding protein YchF [Trichodesmium erythraeum IMS101]
Length = 363
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 237/369 (64%), Positives = 292/369 (79%), Gaps = 9/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+VAVPD RL+VL+ +S S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVAVPDNRLNVLAQISNSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+QVVRCF+ DI+HV+G VDP
Sbjct: 62 QTVPTRIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVQVVRCFDSEDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D++VINLEL SDL Q+E+R+E+ KK +K++Q++L+ LEK++ L +G
Sbjct: 122 VRDIEVINLELALSDLAQVERRIERTKKQARTSKEAQTELE-----VLEKLEVVLNEGNS 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
+ LN E IK L LLT KPIIY ANV+E DLA+ N V +V N+A+ + V
Sbjct: 177 VKMAGLNKDESLIIKPLNLLTSKPIIYAANVSEDDLAN--GNDWVEKVRNIAAVENAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQVE+EL ELP EE +YL SLGV E GL +LI++TY LLGL TYFT+GEKETKAWT
Sbjct: 235 VISAQVESELIELPEEEITDYLKSLGVEEGGLKSLIKATYELLGLHTYFTTGEKETKAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+AG APQAAGVIH+DFE+GFIRAET+AY D V +GS+ A+EKGL+RSEGKDY+V+EG
Sbjct: 295 IKAGTLAPQAAGVIHTDFERGFIRAETIAYKDLVTSGSMTTAKEKGLVRSEGKDYLVKEG 354
Query: 415 DVMLFRFNV 423
D+MLFRFNV
Sbjct: 355 DIMLFRFNV 363
>gi|428220542|ref|YP_007104712.1| GTP-binding protein YchF [Synechococcus sp. PCC 7502]
gi|427993882|gb|AFY72577.1| GTP-binding protein YchF [Synechococcus sp. PCC 7502]
Length = 364
Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust.
Identities = 229/364 (62%), Positives = 280/364 (76%), Gaps = 6/364 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG V VPD RL L+ + S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGTVTVPDERLDTLAKIGGSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLVKGAS+GEGLGN+FL++IR D+I VVRCF+ DI HV G DP
Sbjct: 62 QIIPTRVEFVDIAGLVKGASKGEGLGNQFLANIRTCDAIAHVVRCFDSEDIHHVEGSTDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D+++INLEL SDL QIE+R+++ +KG ++ DS +K E A LEK+ + L +GKPA
Sbjct: 122 ARDIEIINLELALSDLAQIERRIDRTRKGARSGDSDAKF---ELATLEKVAEFLNEGKPA 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
R LN E+++I L LLT+KP IY ANV+ES+LA N +V EV +A + +
Sbjct: 179 RRANLNAEEKEAIAVLQLLTLKPTIYAANVSESELAT--GNKYVEEVRAIAKTENAEVII 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQVE+EL +LP +R ++L SLGV+E GL +LIR+TY LLGLRTYFT G KE +AWTI
Sbjct: 237 ISAQVESELVDLPEADRKDFLESLGVTEGGLKSLIRATYHLLGLRTYFTVGPKEARAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
AGMTAPQAAGVIHSDFEK FIRAETVA+ D VA GS+ AA+EKGL+RSEGK+YIVQEGD
Sbjct: 297 NAGMTAPQAAGVIHSDFEKAFIRAETVAFPDLVANGSMKAAKEKGLVRSEGKEYIVQEGD 356
Query: 416 VMLF 419
VMLF
Sbjct: 357 VMLF 360
>gi|384136976|ref|YP_005519690.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
gi|339291061|gb|AEJ45171.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius Tc-4-1]
Length = 486
Score = 457 bits (1176), Expect = e-126, Method: Compositional matrix adjust.
Identities = 227/382 (59%), Positives = 288/382 (75%), Gaps = 10/382 (2%)
Query: 43 SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
+RRR ++MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VP
Sbjct: 114 TRRR-----GVNMSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVP 167
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
DPRL VL+ + ++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCF
Sbjct: 168 DPRLQVLADIVHPKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCF 227
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAA 221
E++DI HV G VDP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E A
Sbjct: 228 ENSDITHVAGTVDPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKV---EVEA 284
Query: 222 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNE 281
LE+IQ AL +PARSV LN+ E ++ L LLT KP++YVANV E DL DP +NP+V +
Sbjct: 285 LERIQAALESERPARSVELNEEEAIILRDLHLLTAKPVLYVANVGEDDLLDPSANPYVQQ 344
Query: 282 VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRT 341
V A S V + AQ+E+E+ +L E+R +L LG+ E GL LIR Y LLGL T
Sbjct: 345 VEERAKSEGSEVVVVCAQLESEVADLDGEDRDAFLRDLGLEEPGLHRLIRKAYQLLGLIT 404
Query: 342 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 401
+FT+GE E +AWTIR G APQAAGVIHSDFE+GFIRAE VAYDD VAAGS AARE+G
Sbjct: 405 FFTAGEPEVRAWTIRQGTKAPQAAGVIHSDFERGFIRAEVVAYDDLVAAGSFQAAREQGK 464
Query: 402 LRSEGKDYIVQEGDVMLFRFNV 423
+R EGKDY+VQ+GDV FRFNV
Sbjct: 465 MRLEGKDYVVQDGDVCYFRFNV 486
>gi|375010666|ref|YP_004984299.1| GTP-dependent nucleic acid-binding protein engD [Geobacillus
thermoleovorans CCB_US3_UF5]
gi|359289515|gb|AEV21199.1| GTP-dependent nucleic acid-binding protein engD [Geobacillus
thermoleovorans CCB_US3_UF5]
Length = 442
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 77 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 135
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 136 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 195
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ E L ++++ L DGK
Sbjct: 196 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAF---EYDILRRLKETLEDGK 252
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ D E +KQL LLT+KP++YVANV E D+ADP NP V +V A +
Sbjct: 253 PARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADPSGNPFVKDVREFAKRDNAEV 312
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 313 IVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 372
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 373 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 432
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 433 GDIMHFRFNV 442
>gi|56422018|ref|YP_149336.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus
kaustophilus HTA426]
gi|56381860|dbj|BAD77768.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
Length = 366
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ E L ++++ L DGK
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAF---EYDILRRLKETLEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ D E +KQL LLT+KP++YVANV E D+ADP NP V +V A +
Sbjct: 177 PARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADPSGNPFVKDVREFAKRDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|428216948|ref|YP_007101413.1| GTP-binding protein YchF [Pseudanabaena sp. PCC 7367]
gi|427988730|gb|AFY68985.1| GTP-binding protein YchF [Pseudanabaena sp. PCC 7367]
Length = 364
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 231/368 (62%), Positives = 283/368 (76%), Gaps = 8/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA++ N KA+AANFPFCTIEPNVG V VPD RL+ L+ + KS
Sbjct: 2 LKAGIVGLPNVGKSTLFNALIANAKAEAANFPFCTIEPNVGTVTVPDQRLNKLAEIGKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA VEFVDIAGLVKGAS+GEGLGN+FL +IR D+I+QVVRCF++ DI HV +DP
Sbjct: 62 QIVPARVEFVDIAGLVKGASKGEGLGNQFLGNIRACDAIVQVVRCFDNPDIHHVEATIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D+++INLEL SDL Q+EKRME+ + K+S+ K+A E LEK+QQ L G+P
Sbjct: 122 ARDIEIINLELSLSDLAQVEKRMERTR----KNSRVASKEASFELEVLEKLQQTLDQGQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR LN+ E +I L LLT+KPIIY ANV+E DLA N V +V +AS+ + V
Sbjct: 178 ARMANLNEEELAAISFLQLLTLKPIIYAANVSEDDLAT--GNAWVEKVRAIASNENAEVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQVEAEL EL +++E+L SLGVSE GL +LI++TY LLGLRTYFT G KE +AWT
Sbjct: 236 IVSAQVEAELIELSDADKLEFLESLGVSEGGLRSLIKATYDLLGLRTYFTVGPKEARAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AGM+APQAAGVIHSDFE+GFIRAET+ +DD V GS+ AA+EKGL+RSEGK+Y VQEG
Sbjct: 296 ITAGMSAPQAAGVIHSDFERGFIRAETIGFDDLVQTGSMKAAKEKGLVRSEGKEYTVQEG 355
Query: 415 DVMLFRFN 422
DVMLF N
Sbjct: 356 DVMLFLTN 363
>gi|434386311|ref|YP_007096922.1| GTP-binding protein YchF [Chamaesiphon minutus PCC 6605]
gi|428017301|gb|AFY93395.1| GTP-binding protein YchF [Chamaesiphon minutus PCC 6605]
Length = 362
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/363 (65%), Positives = 289/363 (79%), Gaps = 5/363 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AAN+PFCTIEPNVG V+VPD RL VL+ + S+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANYPFCTIEPNVGSVSVPDERLQVLANMVNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VP VEFVDIAGLVKGASQGEGLG+KFLSHIREVD+++QVVRCFED+DI+HV+G V+P
Sbjct: 62 SIVPTRVEFVDIAGLVKGASQGEGLGSKFLSHIREVDTLVQVVRCFEDDDIIHVSGVVNP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++VINLEL+ +D+DQIEKR+++ +K SK E ALEK+ L GKPAR
Sbjct: 122 QQDIEVINLELILADIDQIEKRIDRARKTA---RTSKEAQVEVVALEKLLVDLNAGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+D E DSIK L LLT KP+IY ANV+E DLA N V +V +A+ + +
Sbjct: 179 KVALSDEESDSIKGLGLLTRKPMIYAANVSEEDLAT--GNAFVEQVRAVAAKEDAQVTLV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL ELP EE+ E+L SLGV+E GL +LIR+TY LLGLRTYFT G KET+AWTI+
Sbjct: 237 SAQVEAELLELPEEEKAEFLESLGVAEGGLKSLIRATYHLLGLRTYFTMGPKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFEKGFIRA+T++Y D VA GS+ AA++KGLLRSEGK+Y+VQEGD+
Sbjct: 297 AGMFAPQAAGVIHSDFEKGFIRAKTISYADMVATGSMQAAKDKGLLRSEGKEYLVQEGDI 356
Query: 417 MLF 419
M F
Sbjct: 357 MEF 359
>gi|218291074|ref|ZP_03495097.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius LAA1]
gi|218238959|gb|EED06166.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius LAA1]
Length = 366
Score = 456 bits (1174), Expect = e-126, Method: Compositional matrix adjust.
Identities = 224/370 (60%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL VL+ +
Sbjct: 1 MSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQVLADIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCFE++DI HV G V
Sbjct: 60 PKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCFENSDITHVAGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E ALE+IQ AL +
Sbjct: 120 DPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKI---EVEALERIQAALESER 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV LN+ E ++ L LLT KP++Y ANV E D+ DP SNP+V +V A S
Sbjct: 177 PARSVELNEEEASILRDLHLLTAKPVLYAANVGEDDILDPSSNPYVQQVEARAKSEGSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + AQ+E+E+ EL E+R +L LG+ E GL LIR Y LLGL T+FT+GE E +AW
Sbjct: 237 VVVCAQLESEVAELEGEDRDAFLRDLGLEEPGLHRLIRKAYQLLGLITFFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIHSDFE+GFIRAE VAYDD VAAGS AARE+G +R EGKDY+VQ+
Sbjct: 297 TIRKGTKAPQAAGVIHSDFERGFIRAEVVAYDDLVAAGSFQAAREQGKIRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV FRFNV
Sbjct: 357 GDVCYFRFNV 366
>gi|258512889|ref|YP_003186323.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257479615|gb|ACV59934.1| GTP-binding protein YchF [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 366
Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust.
Identities = 223/370 (60%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL VL+ +
Sbjct: 1 MSLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQVLADIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EFVDIAGLVKGASQGEGLGN+FL+HIREVD+I+ VVRCFE++DI HV G V
Sbjct: 60 PKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLAHIREVDAIVHVVRCFENSDITHVAGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D+IN+EL+ +DL+ + KR+++ +K K+ D + K+ E ALE+IQ AL +
Sbjct: 120 DPLRDIDIINVELILADLETVAKRLDRARKNMKSGDKRFKI---EVEALERIQAALESER 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV LN+ E ++ L LLT KP++Y ANV E D+ DP SNP+V +V A S
Sbjct: 177 PARSVELNEEEASILRDLHLLTAKPVLYAANVGEDDILDPSSNPYVQQVEARAKSEGSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + AQ+E+E+ EL E+R +L LG+ E GL LIR Y LLGL T+FT+GE E +AW
Sbjct: 237 VVVCAQLESEVAELEGEDRDTFLRDLGLEEPGLHRLIRKAYQLLGLITFFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIHSDFE+GFIRAE +AYDD VAAGS AARE+G +R EGKDY+VQ+
Sbjct: 297 TIRKGTKAPQAAGVIHSDFERGFIRAEVIAYDDLVAAGSFQAAREQGKIRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV FRFNV
Sbjct: 357 GDVCYFRFNV 366
>gi|126696665|ref|YP_001091551.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. MIT 9301]
gi|126543708|gb|ABO17950.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9301]
Length = 363
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/367 (63%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSCSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + + S+ K E LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAK--EDTLLEKIEEELEKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++LN+ E IKQL LT KPIIY N+ E+DLA+ N + V + AS+ + + I
Sbjct: 179 SISLNEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSSTVQSFASNENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGLLRSEGK+YIV EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|78213481|ref|YP_382260.1| translation-associated GTPase [Synechococcus sp. CC9605]
gi|78197940|gb|ABB35705.1| conserved hypothetical protein [Synechococcus sp. CC9605]
Length = 363
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 284/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL L+ LSKS+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDERLDRLTELSKSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P + FVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 DTIPTRMGFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D AALE+IQ L +G AR
Sbjct: 122 SRDAEVINLELGLADLAQIEKRRERLKKQMRTSKEAQVED---AALERIQAVLENGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV LND E IK L LLT KPIIY NV+E DLA+ N EV+ LA+ + V I
Sbjct: 179 SVDLNDEEAVMIKPLGLLTAKPIIYATNVSEDDLAE--GNAFCTEVVELAAKEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EE +YL LGV E GL +LIR+TY LLG+RTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELVELGDEETADYLEGLGVKEGGLQSLIRATYRLLGMRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ ++ + AGSL+ AR KG LRSEGK+Y+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGWEKLLEAGSLSEARNKGWLRSEGKEYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|91070029|gb|ABE10955.1| putative GTP-binding protein [uncultured Prochlorococcus marinus
clone ASNC3046]
Length = 363
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 232/367 (63%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL SDL Q++KR E++KK + + S+ K E LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLSDLSQLQKRRERIKK-QVRTSKEAAK--EDTLLEKIEEELEKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L++ E IKQL LT KPIIY N+ E+DLA+ N +V + AS+ + + I
Sbjct: 179 SISLSEEENLIIKQLGFLTAKPIIYATNLNENDLAE--GNDFSLKVQSFASNENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEPEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGLLRSEGK+YIV EGDV
Sbjct: 297 NGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|443320028|ref|ZP_21049160.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 73106]
gi|442790260|gb|ELR99861.1| GTP-binding protein YchF [Gloeocapsa sp. PCC 73106]
Length = 363
Score = 456 bits (1172), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/367 (64%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+ +VPD RL VL+ LS S
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVASVPDERLEVLAQLSSSV 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAITHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+ +K + SK AE LEK++ AL GK R
Sbjct: 122 VRDIEVINLELALADLSQVEKRIERARK---QARTSKEAQAEVEVLEKVKIALDAGKSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ LN+ E + IK L LLT KPIIY ANV+E DLA N V V +A+ + V +
Sbjct: 179 MLNLNETESELIKPLGLLTHKPIIYAANVSEDDLAT--GNEWVEAVRQVAAIENAQVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER+++LASL V+E GL +LI++TY LLGLRTY T+G ET+AWTI+
Sbjct: 237 SAQVESELVELSEEERIDFLASLNVAEGGLKSLIKATYKLLGLRTYLTTGPTETRAWTIQ 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAET++Y D VA+G+ A+EKGLLRSEGK+YIVQEGDV
Sbjct: 297 AGMKAPQAAGVIHSDFERGFIRAETISYQDLVASGNTNNAKEKGLLRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 ILFRFNV 363
>gi|440751943|ref|ZP_20931146.1| GTPase of unknown function family protein [Microcystis aeruginosa
TAIHU98]
gi|440176436|gb|ELP55709.1| GTPase of unknown function family protein [Microcystis aeruginosa
TAIHU98]
Length = 363
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V +
Sbjct: 179 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|402814116|ref|ZP_10863710.1| GTP-dependent nucleic acid-binding protein EngD [Paenibacillus
alvei DSM 29]
gi|402507963|gb|EJW18484.1| GTP-dependent nucleic acid-binding protein EngD [Paenibacillus
alvei DSM 29]
Length = 366
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 221/369 (59%), Positives = 285/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLVKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNRTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLELV +DL+ +EKR+++ KK S K AE A LE++++AL D KP
Sbjct: 120 DPVSDIQTINLELVLADLESVEKRLDRTKKNMK--SGDKKYAAEAAVLERLKEALYDDKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ L+D E+ ++ + LLTMKP++Y ANV+E + D SNP+V +V + A+ + V
Sbjct: 178 ARSLELSDEEKVLVRDMHLLTMKPVLYAANVSEDGVKDADSNPYVQQVRDFAAAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKEMFLEELGLDESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIHSDFE+GFIRAE V+YDD VA GS+ A +E+G LR EGK+Y+VQ+G
Sbjct: 298 IRKGMKAPQAAGVIHSDFERGFIRAEVVSYDDLVAGGSMNAVKEQGKLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|166368340|ref|YP_001660613.1| GTP-dependent nucleic acid-binding protein EngD [Microcystis
aeruginosa NIES-843]
gi|166090713|dbj|BAG05421.1| GTP-binding protein [Microcystis aeruginosa NIES-843]
Length = 363
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V +
Sbjct: 179 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRKIAQEEQAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|425461525|ref|ZP_18841003.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9808]
gi|389825647|emb|CCI24489.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9808]
Length = 380
Score = 455 bits (1170), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 195
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V +
Sbjct: 196 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIV 253
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 254 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 313
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 314 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 373
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 374 LLFRFNV 380
>gi|425464979|ref|ZP_18844289.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9809]
gi|389832870|emb|CCI23128.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9809]
Length = 380
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 295/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 195
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V +
Sbjct: 196 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRKIAQEEQAKVVIV 253
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 254 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 313
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 314 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 373
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 374 LLFRFNV 380
>gi|425447824|ref|ZP_18827806.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9443]
gi|389731540|emb|CCI04418.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9443]
Length = 392
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 31 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 90
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 91 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 150
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 151 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 207
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 208 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 265
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 266 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 325
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 326 AGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 385
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 386 LLFRFNV 392
>gi|425439388|ref|ZP_18819714.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9717]
gi|389720401|emb|CCH95902.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9717]
Length = 375
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 190
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 191 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 248
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 249 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 308
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 309 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 368
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 369 LLFRFNV 375
>gi|390438492|ref|ZP_10226956.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis sp. T1-4]
gi|389838118|emb|CCI31080.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis sp. T1-4]
Length = 375
Score = 454 bits (1169), Expect = e-125, Method: Compositional matrix adjust.
Identities = 237/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 134 ARDIEVINLELALADLGQMEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 190
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 191 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 248
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 249 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 308
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 309 AGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 368
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 369 LLFRFNV 375
>gi|425456428|ref|ZP_18836139.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9807]
gi|389802499|emb|CCI18462.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9807]
Length = 363
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 179 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|354581619|ref|ZP_09000522.1| GTP-binding protein YchF [Paenibacillus lactis 154]
gi|353200236|gb|EHB65696.1| GTP-binding protein YchF [Paenibacillus lactis 154]
Length = 366
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/369 (59%), Positives = 285/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DLD +EKR+E+ KK ++ ++ E LE++++AL + +P
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIERTKKNMKGGNKQYAQEVE--LLERLKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L LLT+KP++Y ANV+E + D SNP+V +V A+ + V
Sbjct: 178 ARSVELSDEEKLIVRDLHLLTLKPVLYAANVSEDGVTDADSNPYVQQVREFAAAENAAVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G LR EGKDY+V +G
Sbjct: 298 IRKGTKAPQAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERGQLRLEGKDYVVNDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|425435770|ref|ZP_18816216.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9432]
gi|389679632|emb|CCH91585.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9432]
Length = 380
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 139 SRDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 195
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 196 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 253
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 254 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 313
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 314 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 373
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 374 LLFRFNV 380
>gi|123968846|ref|YP_001009704.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. AS9601]
gi|123198956|gb|ABM70597.1| probable GTP-binding protein [Prochlorococcus marinus str. AS9601]
Length = 363
Score = 454 bits (1168), Expect = e-125, Method: Compositional matrix adjust.
Identities = 231/367 (62%), Positives = 287/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLQELGNLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + + S+ K E LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAK--EDTLLEKIEEELEKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++LN+ E IKQL LT KPIIY N+ E+DLA N ++V + A + + + I
Sbjct: 179 SISLNEEENLIIKQLGFLTAKPIIYATNLNENDLA--LGNDFSSKVQSFARNENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL E++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELIELEQEDKKDYLIGLGVEEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + + +GS+A A+ KGLLRSEGK+YIV EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQNLIDSGSIANAKTKGLLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|352093573|ref|ZP_08954744.1| GTP-binding protein YchF [Synechococcus sp. WH 8016]
gi|351679913|gb|EHA63045.1| GTP-binding protein YchF [Synechococcus sp. WH 8016]
Length = 363
Score = 454 bits (1167), Expect = e-125, Method: Compositional matrix adjust.
Identities = 239/367 (65%), Positives = 280/367 (76%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL LS LS+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDDRLQKLSDLSQSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+G V P
Sbjct: 62 EIIPTRMEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDDDVIHVSGSVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK +++++D AL +IQ+ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKKQMRTSKEAQVED---EALARIQEVLEAGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L D E IK L LLT KPIIY NV+E DLA N + EV LA + V I
Sbjct: 179 SVELTDEEALMIKPLGLLTAKPIIYATNVSEDDLA--AGNGYCEEVAALAEKEGAESVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EE +YL LGVSE GL +LIR+TY LLGLRTYFT+GEKET+AWT R
Sbjct: 237 SAQVEAELVELGEEECADYLEGLGVSEGGLRSLIRATYRLLGLRTYFTTGEKETRAWTFR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQ AGVIH+DFE+GFIRA+T+ ++ + AGSL AR KG LRSEGKDY+V EGDV
Sbjct: 297 AGMTAPQTAGVIHTDFERGFIRAQTIGWEKLLEAGSLPEARNKGWLRSEGKDYLVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|194477209|ref|YP_002049388.1| hypothetical protein PCC_0763 [Paulinella chromatophora]
gi|171192216|gb|ACB43178.1| hypothetical protein PCC_0763 [Paulinella chromatophora]
Length = 363
Score = 453 bits (1166), Expect = e-125, Method: Compositional matrix adjust.
Identities = 225/366 (61%), Positives = 282/366 (77%), Gaps = 5/366 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +A AANFPFCTIEPNVG V++PD RL +LS +S+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAHAANFPFCTIEPNVGTVSIPDKRLELLSEMSRSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA VEFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCF+DN+++HV+G+VDP
Sbjct: 62 QIIPARVEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFDDNNVIHVSGRVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+ NLEL SDL+QIEKR E+LKK +++++D LE+I L G A
Sbjct: 122 VDDITTTNLELGLSDLNQIEKRRERLKKQIRNSKEAQIED---RILEQIMTELEAGGTAS 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV + E IK L LLT+KPIIYV N++E DL+ N +V +V LA + V I
Sbjct: 179 SVNFTEEELILIKPLGLLTLKPIIYVINLSEDDLST--GNDYVMKVETLAHQEGAQTVHI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL ER++YL SLGV E GL NLI++TY LLGLRTYFT+GEKET+AWT R
Sbjct: 237 SAQVEAELIELGPLERIDYLKSLGVEEGGLQNLIKATYYLLGLRTYFTTGEKETRAWTFR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAG+IH+DFE+GFIRA+T++Y + AGSL AR KG +RSEGK Y+V++GDV
Sbjct: 297 AGMTAPQAAGIIHTDFERGFIRAQTISYQKLLEAGSLIEARSKGWIRSEGKQYLVEDGDV 356
Query: 417 MLFRFN 422
+ F FN
Sbjct: 357 LEFLFN 362
>gi|433447841|ref|ZP_20411217.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus TNO-09.006]
gi|431999682|gb|ELK20598.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus TNO-09.006]
Length = 366
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 218/370 (58%), Positives = 282/370 (76%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKTLTELFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD ++ E L ++++ GK
Sbjct: 120 DPIADIETINLELIFADLETVDKRIDRVGKMAKQKDKEAVF---EYDILSRLKETFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+++ + E +KQL LLT+KP++YVANV E DLADP SN +V +V A + +
Sbjct: 177 PARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDLADPNSNEYVQQVKAFAKEDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+VEAE+ EL EE+ +L LG+ +SGL LIR++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKVEAEMAELDDEEKELFLQELGIEQSGLDQLIRASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIHFRFNV 366
>gi|172036051|ref|YP_001802552.1| GTP-dependent nucleic acid-binding protein EngD [Cyanothece sp.
ATCC 51142]
gi|354552856|ref|ZP_08972163.1| GTP-binding protein YchF [Cyanothece sp. ATCC 51472]
gi|171697505|gb|ACB50486.1| GTP-dependent translation factor [Cyanothece sp. ATCC 51142]
gi|353554686|gb|EHC24075.1| GTP-binding protein YchF [Cyanothece sp. ATCC 51472]
Length = 363
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 239/370 (64%), Positives = 292/370 (78%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLGVLAELSQSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
D++VINLEL +DL Q+EKR+E++K KGK KD Q ++ ALEKI L +GK
Sbjct: 122 ARDIEVINLELALADLAQMEKRLERVKKQVKGK-KDGQEEI-----IALEKIVAVLNEGK 175
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L + E IK L LLT KPIIY ANV+E DLA N V EV +A ++
Sbjct: 176 GARHVELTEEEEVLIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVEEVRKIAETDRAKV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVE+EL E+ EE+ +YL SLGV E GL +LI++TY LLGLRTY T+G +ET+AW
Sbjct: 234 VIVSAQVESELIEISEEEKADYLESLGVKEGGLQSLIQATYELLGLRTYLTTGPQETRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGM APQAAGVIH+DFE+GFIRAET++Y+D VA ++ A+EKGL+RSEGKDY+VQE
Sbjct: 294 TILAGMKAPQAAGVIHTDFERGFIRAETISYEDLVACKTMTVAKEKGLVRSEGKDYVVQE 353
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 354 GDVMLFRFNV 363
>gi|425468895|ref|ZP_18847876.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9701]
gi|389884450|emb|CCI35259.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9701]
Length = 375
Score = 452 bits (1163), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 293/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 190
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 191 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 248
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 249 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 308
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 309 AGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLVRSEGKEYIVQEGDV 368
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 369 LLFRFNV 375
>gi|159026846|emb|CAO89097.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
Length = 363
Score = 452 bits (1162), Expect = e-124, Method: Compositional matrix adjust.
Identities = 234/367 (63%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 62 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E LEKI L DG AR
Sbjct: 122 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELVILEKILICLNDGISAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KP+IY ANV+E DLA N V V +A + Q+ V +
Sbjct: 179 KVDLSKEEEELIKNLGLLSRKPVIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 237 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIQATYELLGLRTYLTTGPQETRAWTII 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 297 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 LLFRFNV 363
>gi|148241815|ref|YP_001226972.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
RCC307]
gi|147850125|emb|CAK27619.1| GTP-dependent nucleic acid-binding protein EngD (probable
translation factor) [Synechococcus sp. RCC307]
Length = 363
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 283/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL L+ LS SQ
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDERLQQLAELSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP VEFVDIAGLV GASQGEGLGNKFL++IREVD+I+ VVRCFED+D++HV+G VDP
Sbjct: 62 EIVPTRVEFVDIAGLVAGASQGEGLGNKFLANIREVDAIVHVVRCFEDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +D QIEKR ++LKK +++++D AALE+I L G AR
Sbjct: 122 GRDAEVINLELALADASQIEKRRDRLKKQMRTSKEAQIED---AALERIAAVLDGGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV +++ E IK L LLT KPIIY ANV+E DLA G N V +A+ + V +
Sbjct: 179 SVEISEEEAALIKPLGLLTAKPIIYAANVSEDDLA--GGNGFSEAVQAMAAKESAETVRV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGVSE GL +LIR+TY+LLGLRTYFT+GEKET+AWTI+
Sbjct: 237 SAQVEAELVELGDEERGDYLEGLGVSEGGLQSLIRATYNLLGLRTYFTTGEKETRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T+ + +AAGS A+ KG LRSEGKDY+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTIGCQELLAAGSFNEAKSKGQLRSEGKDYVVAEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|422302980|ref|ZP_16390337.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9806]
gi|389792104|emb|CCI12135.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 9806]
Length = 375
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/367 (64%), Positives = 294/367 (80%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 14 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 73
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 74 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 133
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 134 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 190
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A + Q+ V +
Sbjct: 191 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIV 248
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 249 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 308
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 309 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLVRSEGKEYIVQEGDV 368
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 369 LLFRFNV 375
>gi|212640667|ref|YP_002317187.1| GTP-dependent nucleic acid-binding protein EngD [Anoxybacillus
flavithermus WK1]
gi|212562147|gb|ACJ35202.1| Predicted GTPase, probable translation factor [Anoxybacillus
flavithermus WK1]
Length = 366
Score = 451 bits (1161), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 282/370 (76%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKTLTELFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD ++ E L ++++ GK
Sbjct: 120 DPIADIETINLELIFADLETVDKRIDRVGKMAKQKDKEAVF---EYDILSRLKETFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+++ + E +KQL LLT+KP++YVANV E DLA+P SN +V +V A + +
Sbjct: 177 PARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDLANPNSNEYVQQVKAFAKEDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+VEAE+ EL EE+ +L LG+ +SGL LIR++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKVEAEMAELDDEEKELFLQELGIEQSGLDQLIRASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIHFRFNV 366
>gi|308800268|ref|XP_003074915.1| YchF Nucleic acid binding GTPase, translation factor, putative (IC)
[Ostreococcus tauri]
gi|116061465|emb|CAL52183.1| YchF Nucleic acid binding GTPase, translation factor, putative (IC)
[Ostreococcus tauri]
Length = 420
Score = 451 bits (1160), Expect = e-124, Method: Compositional matrix adjust.
Identities = 226/383 (59%), Positives = 276/383 (72%), Gaps = 2/383 (0%)
Query: 43 SRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP 102
S R S S SL+ GIVGLPNVGKSTLFNA+VEN +AQAANFPFCTIEPN GIV V
Sbjct: 38 SHRTAHSTSTCRASLKTGIVGLPNVGKSTLFNALVENSRAQAANFPFCTIEPNFGIVPVS 97
Query: 103 DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162
D RL L+ +S+S VPA+VE VDIAGLVKGAS+GEGLGNKFL++IRE D+I+ VVRCF
Sbjct: 98 DKRLETLAAISRSSNIVPATVEIVDIAGLVKGASEGEGLGNKFLANIRECDAIVHVVRCF 157
Query: 163 EDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDS-QSKLKDAEKAA 221
D++IVHVNG VDP+ D +IN EL +D+ QI+KRMEK++K K K S + ++E
Sbjct: 158 NDDNIVHVNGIVDPRRDAAIINTELALADMGQIQKRMEKIQKAKGKVSVTGQTAESELKV 217
Query: 222 LEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVN 280
L I L GK R + LND +R I +L LLT KP IY ANV E DLA G+ N H
Sbjct: 218 LADILSQLEQGKQVRQMELNDDDRYIITELRLLTAKPCIYAANVPEGDLATNGADNVHFK 277
Query: 281 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLR 340
+ + A + +G +SAQV AEL +L E+RV+YL +G + G LI + Y L L
Sbjct: 278 ALADFAVESGAGITCVSAQVAAELKDLTEEDRVDYLLCIGTNSDGTSELIETAYRQLELL 337
Query: 341 TYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 400
TYFT+GEKET+AWTIR G TAPQAAGVIH+DFEKGFI+AETV YDDFV++G A+E G
Sbjct: 338 TYFTTGEKETRAWTIRRGFTAPQAAGVIHTDFEKGFIKAETVHYDDFVSSGGFTGAKENG 397
Query: 401 LLRSEGKDYIVQEGDVMLFRFNV 423
LL+ EGKDY+VQEGDVM+F+FNV
Sbjct: 398 LLQLEGKDYVVQEGDVMVFKFNV 420
>gi|425452677|ref|ZP_18832493.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 7941]
gi|389765420|emb|CCI08674.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Microcystis aeruginosa PCC 7941]
Length = 380
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/367 (64%), Positives = 293/367 (79%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+
Sbjct: 19 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSE 78
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP
Sbjct: 79 KIVPTRIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDP 138
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL Q+EKR+E+L+K +AK+S+ + E A LEKI L DG AR
Sbjct: 139 ARDIEVINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELAILEKILICLNDGISAR 195
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E + IK L LL+ KPIIY ANV+E DLA N V V +A Q+ V +
Sbjct: 196 KVDLSKEEEELIKNLGLLSRKPIIYAANVSEDDLAT--GNDWVESVRQIAQQEQAKVVIV 253
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI
Sbjct: 254 SAQVESELVELSEEERKDFLGSLGVEEGGLKSLIKATYELLGLRTYLTTGPQETRAWTII 313
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GM APQAAGVIHSDFE+GFIRAETV+Y D V + +++AA+EKGL+RSEGK+YIVQEGDV
Sbjct: 314 SGMKAPQAAGVIHSDFERGFIRAETVSYQDLVNSRTMSAAKEKGLVRSEGKEYIVQEGDV 373
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 374 LLFRFNV 380
>gi|428781293|ref|YP_007173079.1| GTP-binding protein YchF [Dactylococcopsis salina PCC 8305]
gi|428695572|gb|AFZ51722.1| GTP-binding protein YchF [Dactylococcopsis salina PCC 8305]
Length = 363
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 233/367 (63%), Positives = 285/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL +L+ +SKSQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEILAEISKSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLV GAS+GEGLGN+FL++IREVD+I+ VVRCFE +DIVHV+G VDP
Sbjct: 62 RIVPTRIEFVDIAGLVAGASKGEGLGNQFLANIREVDAIVHVVRCFESDDIVHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VINLEL +DL QIEKR+ + +K K+ ++++ L + A+ +GK R
Sbjct: 122 VRDIEVINLELALADLSQIEKRIARTRKDAKKNKDAQVELELLERL---EAAINEGKTVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V LN+ E IK L LLT KPIIY NV+E DLA N V +V NLA + V I
Sbjct: 179 QVDLNEDEEAIIKPLGLLTKKPIIYATNVSEEDLAT--GNQAVEKVRNLAEQENASVVVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL EE+ ++L SLGV+E GL +LIR+TY LLGLRTY T+GE ET+AWTIR
Sbjct: 237 SAQVESELIELSEEEKTDFLDSLGVTEGGLQSLIRATYDLLGLRTYLTTGETETRAWTIR 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFE+GFIRAET++Y+ SLAAAREKGL+RSEGK+Y+VQEGDV
Sbjct: 297 AGMKAPQAAGVIHSDFERGFIRAETISYEKLAEIQSLAAAREKGLIRSEGKEYVVQEGDV 356
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 357 IEFRFNV 363
>gi|421858744|ref|ZP_16291004.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
gi|410831714|dbj|GAC41441.1| predicted GTPase [Paenibacillus popilliae ATCC 14706]
Length = 366
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 285/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVAVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DL+ +EKR+E+ KK + ++AE LE++++AL +P
Sbjct: 120 NPVSDIQTINLELILADLESVEKRLERTKKNMKSGDKKFAQEAE--VLERLKEALYHDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ + D E+ ++ L LLTMKP++Y ANV+E +AD +NP+V +V + A+ + V
Sbjct: 178 ARSLDVTDDEKLLVRDLHLLTMKPVLYAANVSEDGIADTDNNPYVQQVRDFAAKENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELDGEDKEMFLQELGLEESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIH+DFE+GFIRAE V+YDD VAAGS+ +E+G LR EGK+Y+VQ+G
Sbjct: 298 IRKGMKAPQAAGVIHTDFERGFIRAEVVSYDDLVAAGSMNVVKEQGKLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|291459283|ref|ZP_06598673.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291418537|gb|EFE92256.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 365
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 221/369 (59%), Positives = 284/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PFCTI+PNVG+VAVPD RLH+LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIDPNVGVVAVPDERLHLLSELYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIRETDAIVHVVRCFEDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDLD +E+RM+KLKK D ++K AE L ++ Q L GK A
Sbjct: 120 LRDIETINLELIFSDLDLLERRMQKLKKLSQNDKEAK---AELMLLSELYQYLESGKLAI 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
D ++++ + L LLT KP+IY NV+E L+D G+ NPHV +V A + SG
Sbjct: 177 GFDAGDEDKNAFVDSLDLLTRKPVIYACNVSEDSLSDDGTGNPHVQKVRGYAKETGSGVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ+E E++ELP EER EYL SLG+SESGL ++R++YSLLGL ++ T+GEKE++AWT
Sbjct: 237 VISAQIEQEISELPEEERTEYLESLGLSESGLDKIVRASYSLLGLMSFLTAGEKESRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFI+AE V Y D + SL+AAREKGL+R EGKDY++Q+G
Sbjct: 297 IKKGTKAPQAAGKIHSDFERGFIKAEVVNYKDLLDLKSLSAAREKGLVRMEGKDYVMQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|196249876|ref|ZP_03148572.1| GTP-binding protein YchF [Geobacillus sp. G11MC16]
gi|196210752|gb|EDY05515.1| GTP-binding protein YchF [Geobacillus sp. G11MC16]
Length = 366
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL+VL + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLNVLMEMFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR+E++ K K KD ++ E L ++++ L GK
Sbjct: 120 DPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAF---EYDILLRLKETLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V D E +KQL LLT KP++YVANV E D+ DP SNP V EV A +
Sbjct: 177 PARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+Y D VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|261420892|ref|YP_003254574.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus sp.
Y412MC61]
gi|319768563|ref|YP_004134064.1| GTP-binding protein YchF [Geobacillus sp. Y412MC52]
gi|261377349|gb|ACX80092.1| GTP-binding protein YchF [Geobacillus sp. Y412MC61]
gi|317113429|gb|ADU95921.1| GTP-binding protein YchF [Geobacillus sp. Y412MC52]
Length = 366
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ E L ++++ L GK
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAF---EYDILRRLKETLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 177 PARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|126658802|ref|ZP_01729946.1| translation-associated GTPase [Cyanothece sp. CCY0110]
gi|126619900|gb|EAZ90625.1| translation-associated GTPase [Cyanothece sp. CCY0110]
Length = 363
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 235/370 (63%), Positives = 290/370 (78%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA AANFPFCTIEPNVG+V+VPD RL VL+ LS+S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKADAANFPFCTIEPNVGVVSVPDERLTVLAELSQSD 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLVKGASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G VDP
Sbjct: 62 KVVPTRMEFVDIAGLVKGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
D++VINLEL +DL Q+EKR+E+++ KGK K+ Q ++ ALEKI AL +G
Sbjct: 122 ARDIEVINLELALADLSQMEKRLERVQKQVKGK-KEGQEEI-----VALEKIIAALNEGT 175
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L+ E IK L LLT KPIIY ANV+E DLA N V EV +A +
Sbjct: 176 GARHVELSKEEEVLIKPLGLLTRKPIIYAANVSEDDLAT--GNDWVEEVRKIAEADNAKV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQVE+EL E+ EE+ +YL +LGV E GL +LI++TY LLGLRTY T+G +ET+AW
Sbjct: 234 VIVSAQVESELIEISEEEKADYLDALGVKEGGLQSLIKATYELLGLRTYLTTGPQETRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGM APQAAGVIH+DFE+GFIRAET++Y+D VA ++ A+EKGL+RSEGKDY+V+E
Sbjct: 294 TIFAGMKAPQAAGVIHTDFERGFIRAETISYEDLVACKTMTVAKEKGLVRSEGKDYVVKE 353
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 354 GDVMLFRFNV 363
>gi|448239755|ref|YP_007403813.1| GTP-dependent nucleic acid-binding protein [Geobacillus sp. GHH01]
gi|445208597|gb|AGE24062.1| GTP-dependent nucleic acid-binding protein [Geobacillus sp. GHH01]
Length = 366
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLELV +DL+ I+KR+E++ K K KD ++ E L ++++ L GK
Sbjct: 120 DPLADIETINLELVLADLETIDKRIERVGKIAKQKDKEAAF---EYDILRRLKETLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 177 PARTLEFTDEEMKIVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|254526846|ref|ZP_05138898.1| GTP-binding protein YchF [Prochlorococcus marinus str. MIT 9202]
gi|221538270|gb|EEE40723.1| GTP-binding protein YchF [Prochlorococcus marinus str. MIT 9202]
Length = 363
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 230/367 (62%), Positives = 288/367 (78%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGI+GLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN GIV+VPD RL L LS SQ
Sbjct: 2 LKAGIIGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNKGIVSVPDQRLKELGDLSSSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+D++HV+GKVDP
Sbjct: 62 NIIPTKIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSDVIHVSGKVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL +DL Q++KR E++KK + + S+ K E LEKI++ L G R
Sbjct: 122 LDDIEIINLELNLADLSQLQKRRERIKK-QVRTSKEAAK--EDTLLEKIEEELQKGLSVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++L++ E IKQL LT KPIIY N+ E+DLA+ N ++V + A+ + + I
Sbjct: 179 SISLSEEENLIIKQLGFLTAKPIIYAINLNENDLAE--GNDFSSKVQSFANSENTECIKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL EL SE++ +YL LGV E GL +LIRSTY LLGL+TYFT+GEKETKAWTI+
Sbjct: 237 SAQVESELMELESEDKKDYLMGLGVKEGGLSSLIRSTYKLLGLKTYFTTGEKETKAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + +GS+A A+ KGLLRSEGK+Y+V EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYQSLIESGSIANAKTKGLLRSEGKEYVVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|430751991|ref|YP_007214899.1| GTPase [Thermobacillus composti KWC4]
gi|430735956|gb|AGA59901.1| putative GTPase, probable translation factor [Thermobacillus
composti KWC4]
Length = 366
Score = 449 bits (1156), Expect = e-124, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 284/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L K
Sbjct: 1 MGLKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PQRKVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +DL+ +E+R+E+ +K + +++ + LE+I++AL + +P
Sbjct: 120 DPLSDIATINLELILADLETVERRLERARKNTKSGEKKYIQEVQ--VLERIREALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L L+T KP++Y ANV+ES+ A+ NP V V A + V
Sbjct: 178 ARSVELDDDEKLLVRDLHLITSKPVLYAANVSESEAANADGNPLVQAVRAYAESEGAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL+TYFT+GE+E +AWT
Sbjct: 238 PISAKVEAEIAELDGEDKALFLEELGIKESGLDRLIKAAYKLLGLQTYFTAGEQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIHSDFE+GFIRAE V+Y+DFVAAGS+ A RE+G LR EGKDY+VQ+G
Sbjct: 298 IRKGTKAPQAAGVIHSDFERGFIRAEVVSYEDFVAAGSMNAVRERGQLRLEGKDYVVQDG 357
Query: 415 DVMLFRFNV 423
D+M FRFNV
Sbjct: 358 DIMHFRFNV 366
>gi|333372825|ref|ZP_08464747.1| GTP-dependent nucleic acid-binding protein EngD [Desmospora sp.
8437]
gi|332971414|gb|EGK10372.1| GTP-dependent nucleic acid-binding protein EngD [Desmospora sp.
8437]
Length = 366
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/370 (59%), Positives = 288/370 (77%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ G A++AN+PFCTI+PNVG+V VPD R++ L+ +
Sbjct: 1 MSLTTGIVGLPNVGKSTLFNAITRAG-AESANYPFCTIDPNVGVVDVPDERMNRLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP S +F DIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFED++I HV+G V
Sbjct: 60 PQRIVPTSFQFTDIAGLVKGASKGEGLGNQFLSHIREVDAIIHVVRCFEDDNITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLELV +DL+ +E+R++++ ++ ++ D+++K E LEK+QQ L +GK
Sbjct: 120 DPVGDMETINLELVLADLETVERRLDRVARQKRSGDAEAK---KEHEVLEKLQQTLAEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR + L + E + I+ L LLT+K ++Y ANV+E D+ADP +NPHV + A +
Sbjct: 177 PARGLNLEEEELERIRSLNLLTLKKMLYAANVSEEDVADPDANPHVGALRKQADAEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
VTISAQ+EAE+ EL EER ++L+ LG+S SGL L+ + Y LLGL TYFT+GEKE +AW
Sbjct: 237 VTISAQLEAEIAELEGEERDQFLSELGLSASGLDRLVAAAYRLLGLITYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G APQAAGVIHSDFE+GFIRAE V++ D V +GSLA ARE+GLLRSEGK+Y+VQ+
Sbjct: 297 TVRQGTRAPQAAGVIHSDFERGFIRAEVVSFTDLVQSGSLAGAREQGLLRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|387928253|ref|ZP_10130931.1| GTP-binding protein YchF [Bacillus methanolicus PB1]
gi|387587839|gb|EIJ80161.1| GTP-binding protein YchF [Bacillus methanolicus PB1]
Length = 366
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 218/372 (58%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHRLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ INLEL+ +DL+ +EKR+ EK+ K K KD+ + + L +++A
Sbjct: 120 DPVADIETINLELILADLESVEKRIGRVEKMAKQKDKDASFEFE-----VLSMLKEAFES 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V +D + +K L LLT+KP++YVANV E D+ADP SN +V +V A S
Sbjct: 175 EKPARAVEFSDEQMKVVKGLHLLTIKPVLYVANVGEEDVADPSSNEYVQQVKEYAEKDNS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR YSLLGL TYFT+G +E +
Sbjct: 235 EVIVVCAKIESEIAELDGEEKAMFLQELGIEESGLDQLIRKAYSLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GM APQ AG+IHSDFE+GFIRAETV+YDD +AAGS+AAARE G +R EGKDY V
Sbjct: 295 AWTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLLAAGSMAAAREAGKVRLEGKDYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIHFRFNV 366
>gi|452823454|gb|EME30464.1| GTP-binding protein [Galdieria sulphuraria]
Length = 422
Score = 449 bits (1155), Expect = e-123, Method: Compositional matrix adjust.
Identities = 225/385 (58%), Positives = 284/385 (73%), Gaps = 8/385 (2%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
+S RRR ++S ISM+L++GIVGLPNVGKSTLFNA+++N AQ ANFPFCTIEPNVGIV
Sbjct: 44 SSKRRRLHTSSLISMTLKSGIVGLPNVGKSTLFNALLQNSVAQCANFPFCTIEPNVGIVP 103
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPDPRL VL L+ S+K +P +EF+DIAGLV GAS+GEGLGN+FL+++RE D+IL VVR
Sbjct: 104 VPDPRLEVLQKLNHSEKVIPTFLEFIDIAGLVAGASKGEGLGNRFLANVRECDAILHVVR 163
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKA 220
CFE DIVHV G VDP DVD+IN EL +D QIEK++E++K+ +A DS++ L E
Sbjct: 164 CFESEDIVHVIGSVDPLRDVDIINTELSLADFAQIEKKLERMKRNRA-DSKTTL---EVE 219
Query: 221 ALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVN 280
ALE+ + AL G R+V E+ + L LLT+KP++Y ANV+E LA NP
Sbjct: 220 ALERAKAALDTGCLLRNVNFTSQEKAFLVPLQLLTLKPVLYAANVSEESLAT--GNPFTQ 277
Query: 281 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSES--GLGNLIRSTYSLLG 338
V A + + V +SAQVE+EL L +E+VEYL LGV GL L+R Y+LLG
Sbjct: 278 LVFRRAREENASAVVVSAQVESELASLSEQEKVEYLRILGVQRERIGLCLLVREMYTLLG 337
Query: 339 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 398
L TYFTSG KET+AWTI+ G APQAAG+IHSDFE+GFIRAET++YD VA GS ARE
Sbjct: 338 LETYFTSGPKETRAWTIKKGTKAPQAAGLIHSDFERGFIRAETISYDQMVAVGSEKKARE 397
Query: 399 KGLLRSEGKDYIVQEGDVMLFRFNV 423
+GL+RSEGK+YIV+EGD++ FRFNV
Sbjct: 398 QGLIRSEGKEYIVEEGDIVHFRFNV 422
>gi|335039039|ref|ZP_08532227.1| GTP-binding protein YchF [Caldalkalibacillus thermarum TA2.A1]
gi|334181076|gb|EGL83653.1| GTP-binding protein YchF [Caldalkalibacillus thermarum TA2.A1]
Length = 365
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/368 (58%), Positives = 286/368 (77%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV +PD RL L+ + +Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVQIPDHRLEKLAEIVHTQ 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P + EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I VVRCFED +I HV G+VDP
Sbjct: 61 RIIPTAYEFVDIAGLVKGASRGEGLGNKFLANIREVDAIAHVVRCFEDENITHVAGQVDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
+D++ INLEL+ +DL+ +EKRM +++K K+ D +K + LE+++QA G+ A
Sbjct: 121 IADIETINLELILADLETVEKRMTRVQKMAKSGDKTAK---QQLEVLEQLKQAFEQGQTA 177
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RS+ L++ E IK+L LLT+KP++YVANV+E ++ +NPHV V + A+ + VT
Sbjct: 178 RSLNLSEEEEHLIKELHLLTLKPVLYVANVSEGEIGQEENNPHVQRVKDYAAHDLAEVVT 237
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A+VEAE+ EL E++V +L LG+ ESGL LI++TY LLGL T+FT+GEKE +AWTI
Sbjct: 238 ICAKVEAEIAELEGEDKVLFLEELGIQESGLDQLIKATYKLLGLATFFTAGEKEVRAWTI 297
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IHSDFEKGFIRAE + Y+D VAAGS+A AREKGLLR EGKDY+V++GD
Sbjct: 298 KEGTKAPQAAGKIHSDFEKGFIRAEVIHYNDLVAAGSMAEAREKGLLRLEGKDYVVKDGD 357
Query: 416 VMLFRFNV 423
V+ FRFNV
Sbjct: 358 VIHFRFNV 365
>gi|297531677|ref|YP_003672952.1| GTP-binding protein YchF [Geobacillus sp. C56-T3]
gi|297254929|gb|ADI28375.1| GTP-binding protein YchF [Geobacillus sp. C56-T3]
Length = 366
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL+ + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLDVLTEMFR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFSDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLELV +DL+ I KR+E++ K K KD ++ E L ++++ L GK
Sbjct: 120 DPLADIETINLELVLADLETIYKRIERVGKIAKQKDKEAAF---EYDILRRLKETLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ D E +KQL LLT+KP++YVANV E D+AD NP V +V A +
Sbjct: 177 PARTLEFTDEEMKVVKQLHLLTIKPMLYVANVGEEDIADSSGNPFVKDVREFAKRDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKRQFLQELGIEQSGLDQLIRAAYSLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+YDD VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|261409699|ref|YP_003245940.1| GTP-binding protein YchF [Paenibacillus sp. Y412MC10]
gi|261286162|gb|ACX68133.1| GTP-binding protein YchF [Paenibacillus sp. Y412MC10]
Length = 366
Score = 448 bits (1153), Expect = e-123, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 287/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DLD +EKR+++ KK ++ ++ E LE++++AL + +P
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKKNMKGGNKQYAQEVE--LLERLKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ + V
Sbjct: 178 ARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G LR EGK+Y+V +G
Sbjct: 298 IRKGTKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERGQLRLEGKEYVVNDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|33240682|ref|NP_875624.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
gi|33238210|gb|AAQ00277.1| Predicted GTPase, probable translation factor [Prochlorococcus
marinus subsp. marinus str. CCMP1375]
Length = 363
Score = 448 bits (1152), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/367 (64%), Positives = 282/367 (76%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+ GIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL +L LS S+
Sbjct: 2 LKVGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVSVPDDRLKLLGALSDSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +EFVDIAGLVKGASQGEGLGNKFLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 62 ELVPTRIEFVDIAGLVKGASQGEGLGNKFLSNIREVDAIVHVVRCFEDENVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL SDL QIEKR E+LKK + +S+++D LEKI + G AR
Sbjct: 122 VRDIEIINLELGLSDLSQIEKRRERLKKQIRNNKESQVED---QILEKIHLEIEQGGVAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SVTL D ER IK L LLT KPIIY +N+ E +L+ N V LA + S V I
Sbjct: 179 SVTLLDEERQLIKPLGLLTAKPIIYASNLTEDELSL--GNVFSKNVKELAENESSENVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL ER +YLA LGV E GL +LI+++Y+LLGLRTYFT+GEKETKAWTI
Sbjct: 237 SAQVEAELIELGEFERQDYLAGLGVQEGGLQSLIKASYNLLGLRTYFTTGEKETKAWTIN 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
+GMTAPQAAGVIH+DFE+GFIRA+T+ Y+ + AGSL A+ KG +RSEGK+YIVQEGDV
Sbjct: 297 SGMTAPQAAGVIHTDFERGFIRAQTINYEKLLTAGSLLEAKNKGWIRSEGKEYIVQEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|337744393|ref|YP_004638555.1| protein EngD [Paenibacillus mucilaginosus KNP414]
gi|379718040|ref|YP_005310171.1| protein EngD [Paenibacillus mucilaginosus 3016]
gi|386720595|ref|YP_006186920.1| GTP-binding protein YchF [Paenibacillus mucilaginosus K02]
gi|336295582|gb|AEI38685.1| EngD [Paenibacillus mucilaginosus KNP414]
gi|378566712|gb|AFC27022.1| EngD [Paenibacillus mucilaginosus 3016]
gi|384087719|gb|AFH59155.1| GTP-binding protein YchF [Paenibacillus mucilaginosus K02]
Length = 366
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/373 (57%), Positives = 287/373 (76%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLEGLAKIVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EF+DIAG+VKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFIDIAGIVKGASKGEGLGNKFLSHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK----LKKGKAKDSQSKLKDAEKAALEKIQQALM 230
DP SD++ INLEL+ +D+D +++++E+ LK G K +Q E LEK+++AL
Sbjct: 120 DPISDIETINLELILADVDSVDRKIERSRKNLKGGDKKVAQ------EVETLEKVKEALY 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ KPARS+ L D E+ I+ L LLTMKP++Y ANV+E+++A+ NP+V +V A+
Sbjct: 174 NDKPARSLDLTDEEKLLIRDLHLLTMKPVLYAANVSEAEVANSDDNPYVQKVREYAAAEN 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+VEAE+ EL E++ +L LG+ ESGLG LI++ Y LLGL TYFT+G +E
Sbjct: 234 AEVVPISAKVEAEIAELEGEDKAMFLEELGLQESGLGRLIKAAYKLLGLYTYFTAGVQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTIR GM APQAAGVIH+DFE+GFIRAE V Y+D +GS+ AA+EKGLLR EGK+Y+
Sbjct: 294 RAWTIRKGMKAPQAAGVIHTDFERGFIRAEVVGYEDLTNSGSMNAAKEKGLLRLEGKEYV 353
Query: 411 VQEGDVMLFRFNV 423
VQ+GDVM FRFNV
Sbjct: 354 VQDGDVMHFRFNV 366
>gi|134299143|ref|YP_001112639.1| GTP-binding protein YchF [Desulfotomaculum reducens MI-1]
gi|134051843|gb|ABO49814.1| GTP-binding protein YchF [Desulfotomaculum reducens MI-1]
Length = 367
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 221/371 (59%), Positives = 283/371 (76%), Gaps = 6/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL L+ L
Sbjct: 1 MPLKCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVTVPDHRLDKLTELVI 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I VVRCF D+DI HV+GK+
Sbjct: 60 PKKTIPTTFEFVDIAGLVKGASRGEGLGNKFLSHIREVDAIAHVVRCFIDDDITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQ-QALMDG 232
DP +D++VINLELV +DL+ +E+R E+L K K++D Q+K+ E +++++ +AL G
Sbjct: 120 DPINDIEVINLELVLADLESMERRQERLASKLKSQDKQAKI---EYQLIQRLKDEALAQG 176
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARS+ D E +K LLT+KPIIYV NV E+DL D N ++ +V A +
Sbjct: 177 KPARSLEFTDEEMKIVKFFHLLTIKPIIYVTNVGENDLPDLEKNSYIQQVKEYAVQENAT 236
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V +SAQ+E+E+ EL EE+ +L LG+ ESGL LIR++Y+LLGLRTYFT+G +E +A
Sbjct: 237 VVPVSAQLESEIAELQGEEKRLFLEELGLDESGLDKLIRASYNLLGLRTYFTAGVQEVRA 296
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI AG APQAAGVIH+DFE+GFIRAE V+YDD V AGS+A ARE G LR EGKDY+VQ
Sbjct: 297 WTITAGTKAPQAAGVIHTDFERGFIRAEVVSYDDLVTAGSMAKAREAGKLRLEGKDYVVQ 356
Query: 413 EGDVMLFRFNV 423
+GD+M FRFNV
Sbjct: 357 DGDIMHFRFNV 367
>gi|319651084|ref|ZP_08005218.1| YyaF protein [Bacillus sp. 2_A_57_CT2]
gi|317397254|gb|EFV77958.1| YyaF protein [Bacillus sp. 2_A_57_CT2]
Length = 366
Score = 447 bits (1151), Expect = e-123, Method: Compositional matrix adjust.
Identities = 220/372 (59%), Positives = 284/372 (76%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++VINLEL+ +DL+ +EKR+ KL K K KDS +L+ LEK+++A
Sbjct: 120 DPIDDIEVINLELILADLESVEKRIGRVSKLAKQKDKDSVFELE-----ILEKLKEAFEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V + + +K L LLT+KP++YVANV+E D+ADP SN +V +V A+ +
Sbjct: 175 DKPARTVEFTEEQMKLVKGLHLLTIKPVLYVANVSEDDVADPSSNEYVQQVKEFAAKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVICAKIESEIAELDGEEKEMFLQELGIEESGLDQLIRAAYNLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GM APQ AGVIHSDFEKGFIRAETV+Y+D VAAG++ AA+E G +R EGK+YIV
Sbjct: 295 AWTFRKGMKAPQCAGVIHSDFEKGFIRAETVSYEDLVAAGNMTAAKEAGKVRLEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 355 KDGDVMHFRFNV 366
>gi|138897057|ref|YP_001127510.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus
thermodenitrificans NG80-2]
gi|134268570|gb|ABO68765.1| GTP-binding protein YchF [Geobacillus thermodenitrificans NG80-2]
Length = 366
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL+VL + +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVEVPDERLNVLMEMFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFNDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR+E++ K K KD ++ E L ++++ L GK
Sbjct: 120 DPLADIETINLELIFADLETVDKRIERVGKIAKQKDKEAAF---EYDILLRLKETLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V D E +KQL LLT KP++YVANV E D+ DP SNP V EV A +
Sbjct: 177 PARTVEFTDEEMRVVKQLHLLTTKPMLYVANVGEEDVVDPDSNPFVAEVREFAKSDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ E EE+ ++L LG+ +SGL LIR+ YSLLGL T+FT+GE+ +AW
Sbjct: 237 IVVCAKIEEEIAEFSDEEKQQFLQELGIKQSGLDQLIRAAYSLLGLATFFTAGEQGVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+Y D VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSYADLVAAGSMAAAREAGKVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|315649893|ref|ZP_07902975.1| GTP-binding protein YchF [Paenibacillus vortex V453]
gi|315274692|gb|EFU38074.1| GTP-binding protein YchF [Paenibacillus vortex V453]
Length = 366
Score = 446 bits (1147), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 286/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DLD +EKR+++ KK ++ ++ E LE++++AL + +P
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKKNMKGGNKQYAQEVE--LLERLKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ + V
Sbjct: 178 ARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAA VIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G LR EGK+Y+V +G
Sbjct: 298 IRKGTKAPQAAAVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERGQLRLEGKEYVVSDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|374607103|ref|ZP_09679908.1| GTP-binding protein YchF [Paenibacillus dendritiformis C454]
gi|374387322|gb|EHQ58839.1| GTP-binding protein YchF [Paenibacillus dendritiformis C454]
Length = 366
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 283/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DL+ +EKR+++ KK + ++AE LE++++ L + +P
Sbjct: 120 NPVSDIQTINLELILADLESVEKRLDRTKKNMKSGDKKFAQEAE--VLERLKEVLYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ L D E+ ++ L LLTMKP++Y ANV+E + D +NP+V +V + A+ + V
Sbjct: 178 ARSLDLTDDEKLLVRDLHLLTMKPVLYAANVSEDGVTDADNNPYVQQVRDFAAQENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELDGEDKEMFLQELGLEESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIH+DFE+GFIRAE V+YDD VAAGS+ +E+G LR EGK+Y+VQ+G
Sbjct: 298 IRKGMKAPQAAGVIHTDFERGFIRAEVVSYDDLVAAGSMNVVKEQGKLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|329929033|ref|ZP_08282835.1| GTP-binding protein YchF [Paenibacillus sp. HGF5]
gi|328937022|gb|EGG33451.1| GTP-binding protein YchF [Paenibacillus sp. HGF5]
Length = 366
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 284/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 1 MPLSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +DLD +EKR+++ KK ++ ++ E LE++++AL + +P
Sbjct: 120 NPVSDIQTINLELILADLDSVEKRIDRAKKNMKGGNKQYAQEVE--LLERLKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L LLT+KP++Y AN++E +A+ SNP+V +V + A+ + V
Sbjct: 178 ARSVELSDDEKLIVRDLHLLTLKPVLYAANLSEDGVAEADSNPYVQQVRDFAAAENAIVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKAMFLEELGLEESGLNRLIKAAYSLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIH+DFE+GFIRAE VAYDD VAAGS+ A+E+G LR EGK+Y+V +G
Sbjct: 298 IRKGTKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGSMNGAKERGQLRLEGKEYVVNDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|403382952|ref|ZP_10925009.1| GTP-binding protein YchF [Paenibacillus sp. JC66]
Length = 366
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 218/369 (59%), Positives = 283/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLQKLADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++ INLEL+ +DLD +EKR+E+ +K K K+ AE LE+I+ AL++ KP
Sbjct: 120 DPISDIETINLELILADLDSVEKRIERSRK-NMKGGDKKVA-AEVECLERIKTALLEEKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RSV L+D +R I+ L LLT+KPI+Y ANV+E + + N +V +V N A+ + V
Sbjct: 178 VRSVELSDEDRLLIRDLHLLTIKPILYAANVSEEEAGNADGNEYVEQVRNYAAKEGAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E+R +LA LG+ ESGL LIR+ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDREMFLAELGLQESGLDRLIRAAYKLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAA VIH+DFE+GFIRAE V+Y+D AAGS+ AA+E+G LR EGK+Y+VQ+G
Sbjct: 298 IRKGTKAPQAAAVIHTDFERGFIRAEVVSYEDLTAAGSMNAAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|227499159|ref|ZP_03929294.1| GTP-binding protein ychF [Acidaminococcus sp. D21]
gi|226904606|gb|EEH90524.1| GTP-binding protein ychF [Acidaminococcus sp. D21]
Length = 369
Score = 444 bits (1143), Expect = e-122, Method: Compositional matrix adjust.
Identities = 220/370 (59%), Positives = 280/370 (75%), Gaps = 3/370 (0%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIV VPDPRL VLS L
Sbjct: 3 STNLEMGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVDVPDPRLQVLSDLY 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S++ VPA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G
Sbjct: 62 HSKRIVPAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGS 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+DP D+++IN EL +DL+ +EK ++LK K S K A+ A L ++ +AL D K
Sbjct: 122 IDPIRDIEIINTELCLADLESVEK--QQLKVQKLLKSGDKTAPAKNALLTRLVEALGDAK 179
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V + E++ I++L LLT+KPI+YVANV+E + AD NPHV + A +
Sbjct: 180 PARQVEMTKDEKEMIRELDLLTLKPILYVANVSEEEAADASGNPHVKALTEYAEKEGAQV 239
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+TISA+VE ++ LP++E EYL G++E+GL LI++ +SLLGL+T+ T+GE E++AW
Sbjct: 240 ITISAKVEEDIASLPADEAKEYLEMEGLTEAGLDRLIKAGFSLLGLQTFLTAGEMESRAW 299
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAG IHSDFEKGFIRAE V+YDD VA GS AAREKGL+R EGKDYI+Q+
Sbjct: 300 TIVKGFTAPQAAGKIHSDFEKGFIRAEIVSYDDLVACGSKQAAREKGLVRLEGKDYIMQD 359
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 360 GDVVEFRFNV 369
>gi|443477297|ref|ZP_21067154.1| GTP-binding protein YchF [Pseudanabaena biceps PCC 7429]
gi|443017593|gb|ELS31999.1| GTP-binding protein YchF [Pseudanabaena biceps PCC 7429]
Length = 363
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 225/363 (61%), Positives = 279/363 (76%), Gaps = 5/363 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG V+VPD RL L+ + KS
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGSVSVPDDRLTTLAEVGKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P VEFVDIAGLV+GAS+GEGLGN+FL +IR D+I+ VVRCFE++DI+HV +DP
Sbjct: 62 QIIPTRVEFVDIAGLVRGASKGEGLGNQFLGNIRVCDAIVHVVRCFENDDIIHVEASIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I LEL SDL Q+++R+++ +K D+ +K+ E AALEK+++ L GKPAR
Sbjct: 122 ARDIEIITLELALSDLAQVDRRIDRTRKAARADADAKV---ELAALEKVREILDAGKPAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
LND E+ +I L LLT+KP IY ANV+E DLA N V +V +A+ + +
Sbjct: 179 LANLNDEEKAAISVLQLLTLKPTIYAANVSEDDLAT--GNAFVEKVKAIAAAENAEVTIV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVE+EL ELP EER ++L SLGV E GL +LIR+TY LLGLRTYFT G KE +AWTI
Sbjct: 237 SAQVESELLELPDEERQDFLESLGVKEGGLKSLIRATYHLLGLRTYFTVGPKEARAWTIH 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGM APQAAGVIHSDFEK FIRAETVA+ D V GS++AAR KGLLRSEGK+YIVQEGDV
Sbjct: 297 AGMKAPQAAGVIHSDFEKAFIRAETVAFKDLVDCGSMSAARAKGLLRSEGKEYIVQEGDV 356
Query: 417 MLF 419
+LF
Sbjct: 357 ILF 359
>gi|124026292|ref|YP_001015408.1| translation-associated GTPase [Prochlorococcus marinus str. NATL1A]
gi|123961360|gb|ABM76143.1| probable GTP-binding protein [Prochlorococcus marinus str. NATL1A]
Length = 363
Score = 444 bits (1142), Expect = e-122, Method: Compositional matrix adjust.
Identities = 232/367 (63%), Positives = 282/367 (76%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL++L LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVSVPDQRLNLLGELSNSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ V+RCF D+D++HV+G VDP
Sbjct: 62 QIIPTRMEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVIRCFRDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL SDL+QIEKR +LKK + ++KL+D LEK+ +AL + R
Sbjct: 122 SRDIEIINLELALSDLNQIEKRRTRLKKQISTIKEAKLED---DVLEKLSEALENENAVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV+L D E+ IK L LLT KPIIY N+ E +LA N +EV LA+ S V I
Sbjct: 179 SVSLTDEEKKLIKPLGLLTEKPIIYATNLGEDELAK--GNSFSDEVNTLATKEGSECVKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGV E GL +LI++TY LLGL TYFT+GEKETKAWTI
Sbjct: 237 SAQVEAELIELGEEERDDYLNGLGVEEGGLISLIKATYRLLGLSTYFTTGEKETKAWTIS 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + AGSL AR KG LRSEGK+Y+V EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYKKLLEAGSLVEARNKGWLRSEGKEYVVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|427724969|ref|YP_007072246.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7376]
gi|427356689|gb|AFY39412.1| GTP-binding protein YchF [Leptolyngbya sp. PCC 7376]
Length = 364
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 233/367 (63%), Positives = 288/367 (78%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ EN KA AANFPFCTIEPNVG+VAVPDPRL VL+ LSKS
Sbjct: 2 LRAGIVGLPNVGKSTLFNALCENAKADAANFPFCTIEPNVGVVAVPDPRLGVLAELSKSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP +EFVDIAGLV+GASQGEGLGN+FL++IREVD+I+ VVRCF+D+DI+HV+G +DP
Sbjct: 62 KIVPTRMEFVDIAGLVEGASQGEGLGNQFLANIREVDAIVHVVRCFDDDDIIHVSGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL+ +D+ Q+EKR+E+ KK ++ + E A LEKI L DGKPAR
Sbjct: 122 VRDIEIINLELILADMSQVEKRLERAKKQAKGKAKEAM--LEVAVLEKILPILEDGKPAR 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V L+ E ++IK L LLT KP+IY NV+E DLA+ N V +V +A+ + V +
Sbjct: 180 QVELDADEENAIKALGLLTRKPVIYATNVSEDDLAE--GNEWVEQVRGVAATENAQVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL ++ ++L +LGVSE GL +LI +TY LLGLRTY T+G +ET+AWTI
Sbjct: 238 SAQVEAELVELEEADKADFLEALGVSEGGLQSLISATYELLGLRTYLTTGPEETRAWTIL 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GM APQAAGVIH+DFE+GFIRAET+ Y + V GS AA+EKGLLRSEGK+Y+VQEGDV
Sbjct: 298 VGMKAPQAAGVIHTDFERGFIRAETIGYQELVDCGSTNAAKEKGLLRSEGKEYVVQEGDV 357
Query: 417 MLFRFNV 423
MLFRFNV
Sbjct: 358 MLFRFNV 364
>gi|253574237|ref|ZP_04851579.1| GTP-binding protein YchF [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251846714|gb|EES74720.1| GTP-binding protein YchF [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 366
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 285/369 (77%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNRTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P SD+ INLEL+ +D++ +EKR+E+ KK ++ ++ E LE+I++AL + +P
Sbjct: 120 NPISDIQTINLELILADVESVEKRIERAKKNMKGGNKQYAQEVE--VLERIKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L D E+ ++ L LLT+KP++Y ANV+E ++D +NP V +V A+ + V
Sbjct: 178 ARSVELTDEEKLIVRDLHLLTLKPVLYAANVSEDGVSDADNNPFVQQVKEFAAAEGAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG++ SGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKKMFLEELGLNASGLDRLIQAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIHSDFE+GFIRAE V+Y+D VAAGS++AARE+G LR EGKDY+VQ+G
Sbjct: 298 IRKGTKAPQAAGVIHSDFERGFIRAEVVSYEDLVAAGSMSAARERGQLRLEGKDYVVQDG 357
Query: 415 DVMLFRFNV 423
D+M FRFNV
Sbjct: 358 DIMHFRFNV 366
>gi|403743974|ref|ZP_10953453.1| GTP-binding protein YchF [Alicyclobacillus hesperidum URH17-3-68]
gi|403122564|gb|EJY56778.1| GTP-binding protein YchF [Alicyclobacillus hesperidum URH17-3-68]
Length = 393
Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust.
Identities = 223/372 (59%), Positives = 281/372 (75%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
++M L+AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPDPRL L+ +
Sbjct: 26 VNMPLQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGVVEVPDPRLQKLAEI 84
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
++ VP + EFVDIAGLVKGASQGEGLGN+FL HIREVD+I+ VVRCFE+ DI HV+G
Sbjct: 85 VHPKRIVPTAFEFVDIAGLVKGASQGEGLGNRFLGHIREVDAIVHVVRCFENGDITHVSG 144
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D++ I+LEL+ +DL+ ++KR+E+ KK K+ D + KL E ALE+I AL
Sbjct: 145 SVDPIRDIETIDLELILADLETVQKRLERTKKNMKSGDKRFKL---EAEALERIAAALEA 201
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+ ARSV LND E+ ++ L LLT KP++YVANV E D AD N HV V A +
Sbjct: 202 GQAARSVELNDEEQALLRDLHLLTRKPVLYVANVGEEDAADSSDNVHVKAVEARAETEGA 261
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + AQ+E+E+ EL E+R +L+ LG+SE+GL LIR Y LLGLRTYFT+GE E +
Sbjct: 262 QVVVVCAQLESEIAELEGEDRDAFLSDLGLSEAGLDRLIRKAYQLLGLRTYFTAGEPEVR 321
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTIR G APQAAGVIHSDFE+GFIRAE VAY+D +AAGS ARE+G +R EGKDY+V
Sbjct: 322 AWTIRTGTKAPQAAGVIHSDFERGFIRAEVVAYEDLIAAGSYQVAREQGKVRLEGKDYVV 381
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 382 EDGDVMHFRFNV 393
>gi|37522802|ref|NP_926179.1| GTP-dependent nucleic acid-binding protein EngD [Gloeobacter
violaceus PCC 7421]
gi|35213804|dbj|BAC91174.1| gll3233 [Gloeobacter violaceus PCC 7421]
Length = 364
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/369 (61%), Positives = 282/369 (76%), Gaps = 8/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+ GIVGLPNVGKSTLFNA+VEN KAQAANFPFCTIEPN G+V VPD RL +L+ + +
Sbjct: 2 LKTGIVGLPNVGKSTLFNALVENAKAQAANFPFCTIEPNTGVVNVPDERLGILARIVSTS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA +E+VDIAGLV+GASQGEGLGN+FLSHIR+VD+++ VVRCFE DI+HV G VDP
Sbjct: 62 TIIPARIEYVDIAGLVRGASQGEGLGNQFLSHIRQVDALVHVVRCFESTDIIHVEGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL--KKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
D+ INLEL SDL Q++KR++K+ +KG +KD + E +ALEKI L +GKP
Sbjct: 122 VRDISTINLELALSDLGQVDKRLQKIAKQKGTSKDQYA----VESSALEKITAVLNEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS L D E++++ L LLT KP+IY ANV+E +LA N +V +A++ + V
Sbjct: 178 ARSCALTDAEKETVVPLELLTFKPVIYAANVSEEELAT--GNRFTEQVAAIAAEESALMV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ+EAEL EL EER YL LGVS+SGL +IR+TY LLGL+T+FT+GEKE +AWT
Sbjct: 236 VISAQLEAELAELEPEERSAYLTDLGVSDSGLQKMIRATYDLLGLQTFFTAGEKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAG IH+DFE+GFIRAETVAY D V AGS AAREKG +RSEGK+YIV++G
Sbjct: 296 ITRGTTAPQAAGTIHTDFERGFIRAETVAYPDLVTAGSQVAAREKGQVRSEGKEYIVKDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|443662567|ref|ZP_21132965.1| GTPase of unknown function family protein [Microcystis aeruginosa
DIANCHI905]
gi|443332067|gb|ELS46695.1| GTPase of unknown function family protein [Microcystis aeruginosa
DIANCHI905]
Length = 357
Score = 443 bits (1139), Expect = e-122, Method: Compositional matrix adjust.
Identities = 229/362 (63%), Positives = 289/362 (79%), Gaps = 5/362 (1%)
Query: 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121
+GLPNVGKSTLFNA+V N KA+AANFPFCTIEPNVG+V+VPD RL VL+ +S S+K VP
Sbjct: 1 MGLPNVGKSTLFNALVANAKAEAANFPFCTIEPNVGVVSVPDERLEVLAKISNSEKIVPT 60
Query: 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD 181
+EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+++DI+HV+G VDP D++
Sbjct: 61 RIEFVDIAGLVKGASRGEGLGNQFLANIREVDAIVHVVRCFDNDDIIHVSGSVDPARDIE 120
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLN 241
VINLEL +DL Q+EKR+E+L+K +AK+S+ + E LEKI L DG AR V L+
Sbjct: 121 VINLELALADLGQVEKRVERLRK-QAKNSKEAAE--ELVILEKILICLNDGISARKVDLS 177
Query: 242 DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVE 301
E + IK L LL+ KP+IY ANV+E DLA N V V +A + Q+ V +SAQVE
Sbjct: 178 KEEEELIKNLGLLSRKPVIYAANVSEDDLAT--GNDWVESVRQIAQEEQAKVVIVSAQVE 235
Query: 302 AELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTA 361
+EL EL EER ++L SLGV E GL +LI++TY LLGLRTY T+G +ET+AWTI +GM A
Sbjct: 236 SELVELSEEERKDFLGSLGVEEGGLKSLIQATYELLGLRTYLTTGPQETRAWTIISGMKA 295
Query: 362 PQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRF 421
PQAAGVIHSDFE+GFIRAETV+Y D V +G+++AA+EKGL+RSEGK+YIVQEGDV+LFRF
Sbjct: 296 PQAAGVIHSDFERGFIRAETVSYQDLVNSGTMSAAKEKGLVRSEGKEYIVQEGDVLLFRF 355
Query: 422 NV 423
NV
Sbjct: 356 NV 357
>gi|428182213|gb|EKX51074.1| hypothetical protein GUITHDRAFT_85091 [Guillardia theta CCMP2712]
Length = 455
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/376 (58%), Positives = 287/376 (76%), Gaps = 10/376 (2%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S L+ GIVGLPNVGKSTLFNA++ A+AANFPFCTIEPNVGIV VPDPRL VL+ +
Sbjct: 85 LSAKLQTGIVGLPNVGKSTLFNALLNKITAEAANFPFCTIEPNVGIVPVPDPRLEVLAKI 144
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S+S K VPA++EFVDIAG+VKGAS+G GLGNKFL++IRE D+I+ VVRCFED++++HV+G
Sbjct: 145 SESVKTVPATMEFVDIAGIVKGASEGAGLGNKFLANIRECDAIVHVVRCFEDDNVIHVDG 204
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKDAEKAALEKIQQALM 230
VDP D++VINLEL+ +DL Q+EKR+E+L++ + K + L E L KI+ L
Sbjct: 205 SVDPVRDMEVINLELILADLVQVEKRLERLERDMKRVKKPEDVL---EHGCLSKIKAQLD 261
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+GK AR+ +ND E+ SIK L LLT+KP+IY ANV +SDL+ N V +V A
Sbjct: 262 EGKAARTAKINDEEKLSIKSLGLLTLKPVIYAANVPDSDLST--GNTMVEKVKEQAGKEG 319
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSE---SGLGNLIRSTYSLLGLRTYFTSGE 347
+ V +SAQVE+E+ EL +EE+ E+L +LG+ + +GL L+R+ Y LLGLRTYFT+G
Sbjct: 320 AKVVLVSAQVESEMAELSAEEKAEFLQALGIEDPNATGLNALVRAAYELLGLRTYFTTGP 379
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
ET+AWTI AG APQAAGVIH DFE+GFIRAET++Y+D V++GS AARE GL R EGK
Sbjct: 380 TETRAWTITAGTKAPQAAGVIHQDFERGFIRAETISYNDLVSSGSEKAARENGLARLEGK 439
Query: 408 DYIVQEGDVMLFRFNV 423
+Y+VQ+GD +LFRFNV
Sbjct: 440 EYVVQDGDSILFRFNV 455
>gi|15616613|ref|NP_244919.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
halodurans C-125]
gi|10176676|dbj|BAB07770.1| GTP-binding protein [Bacillus halodurans C-125]
Length = 366
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFDDENITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ VINLEL+ +DL+ ++KR +++K K KD ++ AE LEK++ A + K
Sbjct: 120 DPIRDISVINLELILADLESVDKRFSRVQKLAKTKDKEAV---AELEVLEKLKDAFENEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ + ++ +K L LLT KP++YVANV+E D+ P NP V +V A++ S
Sbjct: 177 PARSIEFTEEQQKIVKGLHLLTSKPVLYVANVSEDDVLSPDDNPFVQKVKAFAAEENSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA++E E+ EL EE+ +L LG+ ESGL LIR+ YSLLGL+TYFT+GE+E +AW
Sbjct: 237 IVVSAKIEEEIAELDGEEKAMFLEELGIQESGLDQLIRAAYSLLGLQTYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R G APQAAG+IHSDFEKGFIRAETV+Y+D V AGS+A A+E+G +R EGK+Y+VQ+
Sbjct: 297 TFRKGTKAPQAAGIIHSDFEKGFIRAETVSYNDLVEAGSMAVAKERGKVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|336237207|ref|YP_004589823.1| GTP-binding protein YchF [Geobacillus thermoglucosidasius C56-YS93]
gi|423721701|ref|ZP_17695883.1| GTP-binding protein (GTPase) [Geobacillus thermoglucosidans
TNO-09.020]
gi|335364062|gb|AEH49742.1| GTP-binding protein YchF [Geobacillus thermoglucosidasius C56-YS93]
gi|383365504|gb|EID42800.1| GTP-binding protein (GTPase) [Geobacillus thermoglucosidans
TNO-09.020]
Length = 366
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD + L E L ++++ GK
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRVGKIAKQKDKDAML---EYDILMRLKETFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+++ + E +KQL LLT+KP++YVANV E D+A+P +NP V +V A +
Sbjct: 177 PARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDVANPDANPFVQQVREFAQSDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAQLEDEEKELFLQELGIEQSGLDQLIRASYNLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IHSDFE+GFIRAETV+Y+D VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLVAAGSMAAAREAGKIRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIYFRFNV 366
>gi|254479533|ref|ZP_05092852.1| GTP-binding protein YchF [Carboxydibrachium pacificum DSM 12653]
gi|214034535|gb|EEB75290.1| GTP-binding protein YchF [Carboxydibrachium pacificum DSM 12653]
Length = 363
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/367 (59%), Positives = 273/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVVPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++INLEL+ +DL+ +E+RM+K K D ++ E LEKI+ L +GKPAR
Sbjct: 120 VRDVEIINLELILADLETVERRMQKTSKLARNDKKAAF---ELEVLEKIKNTLEEGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ N+ E+ QL LLT KP++YVAN++E DL N HV ++ A S + I
Sbjct: 177 TIQFNEEEKAIANQLMLLTSKPVMYVANISEEDLISGEENLHVKKLREYALKEGSEVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL LP EER E L G+ E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELAALPDEERNELLKEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAE ++++D V AGS AAARE GLLR EGKDY++Q+GDV
Sbjct: 297 RGTKAPQAAGKIHSDFERGFIRAEVISFEDLVKAGSQAAAREMGLLRLEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|452974083|gb|EME73905.1| GTP-binding protein YchF [Bacillus sonorensis L12]
Length = 366
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVGKMAKQKDKEAVF---EFEILTKLKEAFEQEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + + +KQL LLT KP++YVANV+E ++ADP N +V +V A+ +
Sbjct: 177 PARSVEFTEEQHKVLKQLHLLTTKPVLYVANVSEDEVADPSGNEYVQKVREFAAAENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKAMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS++AA+E G +R EGKDYIV++
Sbjct: 297 TFKKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSMSAAKEAGKVRLEGKDYIVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|399048526|ref|ZP_10740011.1| GTP-binding protein YchF [Brevibacillus sp. CF112]
gi|433543027|ref|ZP_20499442.1| GTP-binding protein YchF [Brevibacillus agri BAB-2500]
gi|398053588|gb|EJL45762.1| GTP-binding protein YchF [Brevibacillus sp. CF112]
gi|432185701|gb|ELK43187.1| GTP-binding protein YchF [Brevibacillus agri BAB-2500]
Length = 366
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 220/370 (59%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLTKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+F+DLD +E+R++++ +K K+ D +SK E LEK++ A +G+
Sbjct: 120 DPLSDIETINLELIFADLDSVERRIDRIARKVKSGDKESK---QELDVLEKLKAAFEEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+D ER I+ L LLT+KP++YV NVAE + D +NPHV V A+ +
Sbjct: 177 SARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADNNPHVQAVREHAAKEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 VVISAKVEAEIAELEGEDKEMFLQELGLAESGLDRLIRAAYKLLGLVTYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G AP AAGVIH+DFE+GFIRAE +AYDD V AGS+AAARE+G R EGK+Y+V +
Sbjct: 297 TIRKGTKAPGAAGVIHTDFERGFIRAEVIAYDDLVDAGSVAAARERGKYRLEGKEYVVAD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|334139365|ref|ZP_08512757.1| GTP-binding protein YchF [Paenibacillus sp. HGF7]
gi|333602178|gb|EGL13609.1| GTP-binding protein YchF [Paenibacillus sp. HGF7]
Length = 366
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 282/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLQKLADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ VVRCF D +I HV+GKV
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++ INLEL+ +DLD +EKR+++ +K +K AE EKI++AL + +P
Sbjct: 120 DPISDIETINLELILADLDSVEKRIDRSRKNMK--GGNKQYAAEVECFEKIKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L D ER ++ L LLTMKP++Y ANV+E+++AD +NP+V +V A+ + V
Sbjct: 178 ARSVELTDEERVLVRDLHLLTMKPVLYAANVSEAEVADGDNNPYVQKVREFAAQEGAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG+ ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 AISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIKAAYKLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAA VIH+DFE+GFIRAE V+Y+D A GS+ AA+EKG LR EGK+YIVQ+G
Sbjct: 298 IRKGTKAPQAAAVIHTDFERGFIRAEVVSYEDLTATGSMNAAKEKGQLRLEGKEYIVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|20808085|ref|NP_623256.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
tengcongensis MB4]
gi|20516668|gb|AAM24860.1| predicted GTPase [Thermoanaerobacter tengcongensis MB4]
Length = 363
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/367 (59%), Positives = 274/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVVPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++INLEL+ +DL+ +E+RM+K K D ++ E LEKI+ L +GKPAR
Sbjct: 120 VRDVEIINLELILADLETVERRMQKTSKLARNDKKAAF---ELEVLEKIKNTLEEGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V ++ E+ + QL LLT KP++YVAN++E DL N HV ++ A S + I
Sbjct: 177 AVQFDEEEKAVVNQLMLLTSKPVMYVANISEEDLILREENLHVKKLREYALKEGSEVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL LP EER E L G+ E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELAALPDEERNELLKEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAE ++++D V AGS AAARE GLLR EGKDY++Q+GDV
Sbjct: 297 RGTKAPQAAGKIHSDFERGFIRAEVISFEDLVKAGSQAAAREMGLLRLEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|312112741|ref|YP_003991057.1| GTP-binding protein YchF [Geobacillus sp. Y4.1MC1]
gi|311217842|gb|ADP76446.1| GTP-binding protein YchF [Geobacillus sp. Y4.1MC1]
Length = 366
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV GKV
Sbjct: 60 PKRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+F+DL+ ++KR++++ K K KD + L E L ++++ GK
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRVGKIAKQKDKDAML---EYDILMRLKETFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+++ + E +KQL LLT+KP++YVAN+ E D+A+P +NP V +V A +
Sbjct: 177 PARTLSFTEEEMKVVKQLHLLTIKPMLYVANIGEEDVANPDANPFVQQVREFAQSDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +AW
Sbjct: 237 IVVCAKIEEEIAQLEDEEKELFLQELGIEQSGLDQLIRASYNLLGLATFFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IHSDFE+GFIRAETV+Y+D VAAGS+AAARE G +R EGKDY VQ+
Sbjct: 297 TFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLVAAGSMAAAREAGKIRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIYFRFNV 366
>gi|415883897|ref|ZP_11545926.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
methanolicus MGA3]
gi|387591692|gb|EIJ84009.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
methanolicus MGA3]
Length = 366
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 277/372 (74%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD L L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHSLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ INLEL+ +DL+ +EKR+ EK+ K K KD+ + + L ++ A
Sbjct: 120 DPIADIETINLELILADLETVEKRIGRVEKMAKQKDKDAIFEFE-----ILSMLKDAFES 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V D + +K L LLT+KP++YVANV E D+ADP SN +V +V A +
Sbjct: 175 EKPARAVEFTDEQMKVVKGLHLLTIKPVLYVANVGEEDVADPSSNEYVQKVKKYAEKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A++E+E+ EL EE+ +L LG+ ESGL LIR YSLLGL TYFT+G +E +
Sbjct: 235 EVVVVCAKIESEIAELDGEEKAMFLQELGIEESGLDQLIRKAYSLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GM APQ AG+IHSDFE+GFIRAETV+YDD +AAGS+AAARE G +R EGKDY V
Sbjct: 295 AWTFRKGMKAPQCAGIIHSDFERGFIRAETVSYDDLLAAGSMAAAREAGKVRLEGKDYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIHFRFNV 366
>gi|72382585|ref|YP_291940.1| GTP-dependent nucleic acid-binding protein EngD [Prochlorococcus
marinus str. NATL2A]
gi|72002435|gb|AAZ58237.1| Conserved hypothetical protein 92:GTP-binding protein
[Prochlorococcus marinus str. NATL2A]
Length = 363
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/367 (62%), Positives = 280/367 (76%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG V+VPD RL++L LS S+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGSVSVPDQRLNLLGELSNSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGAS+GEGLGNKFL++IREVD+I+ V+RCF D+D++HV+G VDP
Sbjct: 62 QIIPTRMEFVDIAGLVKGASKGEGLGNKFLANIREVDAIVHVIRCFSDDDVIHVSGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL SDL+QIEKR +LKK + +KL+D LEK+ +AL + R
Sbjct: 122 SRDIEIINLELALSDLNQIEKRRTRLKKQISTSKDAKLED---DVLEKLSEALENENAVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV+L + E+ IK L LLT KPIIY N+ E +LA N EV LA+ S V I
Sbjct: 179 SVSLTNEEKKLIKPLGLLTEKPIIYATNLGEDELAK--GNSFSEEVNTLATKEGSECVKI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGV E GL +LI++TY LLGL TYFT+GEKETKAWTI
Sbjct: 237 SAQVEAELIELGEEERDDYLNGLGVEEGGLISLIKATYRLLGLSTYFTTGEKETKAWTIS 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
GMTAPQAAGVIH+DFEKGFIRA+T++Y + AGSL A+ KG LRSEGK+YIV EGDV
Sbjct: 297 DGMTAPQAAGVIHTDFEKGFIRAQTISYKKLLEAGSLVEAKNKGWLRSEGKEYIVNEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|219121906|ref|XP_002181298.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217407284|gb|EEC47221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 363
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 215/371 (57%), Positives = 280/371 (75%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ IVGLPNVGKSTLFNA+ E A+AAN+PFCTIEPNVGIV+VPDP+L +L ++K
Sbjct: 1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNVGIVSVPDPKLEILKDINK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VPA++EFVD+AGL+KGAS GEGLGN+FL+ IR+ D+++ VVRCFED D+VHV+G +
Sbjct: 61 SVKVVPAALEFVDVAGLIKGASTGEGLGNQFLASIRQCDAVVHVVRCFEDEDVVHVDGSI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D ++INLEL +DL Q+EKR+E+++K + EK+ALEK+ L+ +P
Sbjct: 121 DPVRDAELINLELALADLSQVEKRLERVRKDR------NASPVEKSALEKVAAVLLKDQP 174
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V L++ E ++IK L LLT K ++Y ANV ++DLA+ N V+ + A + V
Sbjct: 175 ARNVVLDEEEENAIKSLGLLTAKKMVYAANVGDADLAN--GNEMVDRLRETAEKEGAKLV 232
Query: 295 TISAQVEAELTELPSEERVEYLASLGV--SESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+SAQVEAEL EL +R ++L SLGV ++GL L+R Y +LGL+TY+TSG ET+A
Sbjct: 233 VVSAQVEAELVELSVGDRTDFLESLGVKLEDTGLRKLVREAYDILGLQTYYTSGPTETRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTIR G TAP+AAGVIH+DFE+GFIRAETV+YDD VA GS A+ KG LRSEGKDYIVQ
Sbjct: 293 WTIRKGWTAPKAAGVIHNDFERGFIRAETVSYDDLVACGSEIEAKNKGKLRSEGKDYIVQ 352
Query: 413 EGDVMLFRFNV 423
EGDV+LFRFNV
Sbjct: 353 EGDVILFRFNV 363
>gi|352685650|ref|YP_004897635.1| GTP-binding protein ychF [Acidaminococcus intestini RyC-MR95]
gi|350280305|gb|AEQ23495.1| GTP-binding protein ychF [Acidaminococcus intestini RyC-MR95]
Length = 362
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 218/364 (59%), Positives = 277/364 (76%), Gaps = 3/364 (0%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIV VPDPRL VLS L S++ V
Sbjct: 2 GIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVDVPDPRLQVLSDLYHSKRIV 60
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G +DP D
Sbjct: 61 PAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGSIDPIRD 120
Query: 180 VDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVT 239
+++IN EL +DL+ +EK ++LK K S K A+ A L ++ +AL D KPAR V
Sbjct: 121 IEIINTELCLADLESVEK--QQLKVQKLLKSGDKTAPAKNALLTRLVEALGDAKPARQVE 178
Query: 240 LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQ 299
+ E++ I++L LLT+KPI+YVANV+E + AD NPHV + A + +TISA+
Sbjct: 179 MTKDEKEMIRELDLLTLKPILYVANVSEEEAADASGNPHVKALTEYAEKEGAQVITISAK 238
Query: 300 VEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGM 359
VE ++ LP++E EYL G++E+GL LI++ +SLLGL+T+ T+GE E++AWTI G
Sbjct: 239 VEEDIASLPADEAKEYLEMEGLTEAGLDRLIKAGFSLLGLQTFLTAGEMESRAWTIVKGF 298
Query: 360 TAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419
TAPQAAG IHSDFEKGFIRAE V+YDD VA GS AAREKGL+R EGKDYI+Q+GDV+ F
Sbjct: 299 TAPQAAGKIHSDFEKGFIRAEIVSYDDLVACGSKQAAREKGLVRLEGKDYIMQDGDVVEF 358
Query: 420 RFNV 423
RFNV
Sbjct: 359 RFNV 362
>gi|239828697|ref|YP_002951321.1| GTP-dependent nucleic acid-binding protein EngD [Geobacillus sp.
WCH70]
gi|239808990|gb|ACS26055.1| GTP-binding protein YchF [Geobacillus sp. WCH70]
Length = 366
Score = 441 bits (1134), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIV VPD RL VL+ + K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVEVPDERLKVLTEMFK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV G+V
Sbjct: 60 PQRTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFTDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D++ INLEL+F+DL+ ++KR++++ K ++ K KDA E L ++++ G
Sbjct: 120 DPLADIETINLELIFADLETVDKRIDRV----GKIAKQKDKDAVFEYDILVRLKETFEAG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+++ + E +KQL LLT+KP++YVANV E D+A+P +NP V +V A +
Sbjct: 176 KPARTLSFTEEEMKVVKQLHLLTIKPMLYVANVGEEDVANPDANPFVKQVREFAKSDNAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ +L EE+ +L LG+ +SGL LIR++Y+LLGL T+FT+GE+E +A
Sbjct: 236 VIVVCAKIEEEIAQLDDEEKELFLQELGIQQSGLDQLIRASYNLLGLATFFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT R GM AP+ AG+IHSDFE+GFIRAETV+Y+D + AGS+AAARE G +R EGKDY VQ
Sbjct: 296 WTFRRGMKAPECAGIIHSDFERGFIRAETVSYEDLITAGSMAAAREAGKIRLEGKDYEVQ 355
Query: 413 EGDVMLFRFNV 423
+GD++ FRFNV
Sbjct: 356 DGDIIYFRFNV 366
>gi|357013940|ref|ZP_09078939.1| GTP-binding protein YchF [Paenibacillus elgii B69]
Length = 366
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 282/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDRLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP + EFVDIAGLVKGAS+GEGLGNKFL+HIREVD+I+ VVRCF+D +I HV+G V
Sbjct: 60 PNRIVPTAFEFVDIAGLVKGASKGEGLGNKFLAHIREVDAIVHVVRCFQDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++ INLEL+ +D+D ++KR+++ +K + ++ E LE+I++AL + KP
Sbjct: 120 DPISDIETINLELILADVDSVDKRIDRSRKNMKGGDKKYAQEVE--TLERIKEALYNDKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ I+ L LLTMKP++Y ANV+ES++AD NP+V +V A+ + V
Sbjct: 178 ARSVELSDEEKLLIRDLHLLTMKPVLYAANVSESEVADAEGNPYVQKVREYAALEGAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG+ ESGL LI+ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLQESGLNRLIKGAYKLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAA VIH+DFE+GFIRAE V YDD + +GS+ AA+EKG LR EGK+Y+VQ+G
Sbjct: 298 IRMGTKAPQAAAVIHTDFERGFIRAEVVGYDDLIGSGSMNAAKEKGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|304407783|ref|ZP_07389434.1| GTP-binding protein YchF [Paenibacillus curdlanolyticus YK9]
gi|304343266|gb|EFM09109.1| GTP-binding protein YchF [Paenibacillus curdlanolyticus YK9]
Length = 366
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLIKLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCF D +I HV GKV
Sbjct: 60 PNKTVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFVDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ INLEL+ SD+D +++R+++ +K + ++ E LE++++AL + +P
Sbjct: 120 DPLGDIQTINLELILSDIDSVDRRIDRSRKNMKGGDKKYAQEIE--VLERLKEALYNDQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D ER I+ L LLT+KP++Y ANV+E+++A+ NP+VN V A+ + V
Sbjct: 178 ARSVELSDDERQLIRDLHLLTIKPVLYAANVSEAEVANADENPYVNIVREFAAAEGAAVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG+ ESGL LI + Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLQESGLNRLINAAYKLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIH+DFE+GFIRAE V+Y+D VAAGS+ AA+EKG LR EGK+Y+VQ+G
Sbjct: 298 IRKGMKAPQAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNAAKEKGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|52082637|ref|YP_081428.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|319648503|ref|ZP_08002719.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
BT1B_CT2]
gi|404491517|ref|YP_006715623.1| GTP-binding protein YchF [Bacillus licheniformis DSM 13 = ATCC
14580]
gi|423680372|ref|ZP_17655211.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis WX-02]
gi|52005848|gb|AAU25790.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|52350538|gb|AAU43172.1| GTP-dependent nucleic acid-binding protein YyaF [Bacillus
licheniformis DSM 13 = ATCC 14580]
gi|317389582|gb|EFV70393.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
BT1B_CT2]
gi|383441478|gb|EID49187.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
licheniformis WX-02]
Length = 366
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 282/370 (76%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVGKMAKQKDKEAVF---EFEILTKLKEAFEQEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV ++ ++ +KQL LLT KP++YVANV+E ++ADP N +V +V A+ +
Sbjct: 177 PARSVEFSEEQQKVLKQLHLLTTKPVLYVANVSEDEVADPSGNEYVQKVREFAAAENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKAMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IH+DFE+GFIRAETVAYDD + AGS+ AA+E G +R EGK+YIV++
Sbjct: 297 TFKKGMKAPECAGIIHTDFERGFIRAETVAYDDLLEAGSMTAAKEAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|148239951|ref|YP_001225338.1| GTP-dependent nucleic acid-binding protein EngD [Synechococcus sp.
WH 7803]
gi|147848490|emb|CAK24041.1| Predicted GTPase [Synechococcus sp. WH 7803]
Length = 363
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 236/367 (64%), Positives = 286/367 (77%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +LS LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDSRLELLSDLSSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 ETIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGAVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL Q+EKR E+LKK +++++D AALE+IQ L G AR
Sbjct: 122 ARDAEVINLELGLADLAQLEKRRERLKKQMRTSKEAQIED---AALERIQAVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L++ E +K L LLT KPIIY NV+E DLA G N E++ LA+ + V I
Sbjct: 179 SVELSEEEALMLKPLGLLTAKPIIYATNVSEDDLA--GGNGFCEEIVALAAKEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELIELGDEERQDYLDGLGVNEGGLQSLIRATYQLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T++ D + AGSL AR KG LRSEGK+Y+V+EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTISTDKLLEAGSLVEARNKGWLRSEGKEYVVEEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|408357761|ref|YP_006846292.1| GTP-dependent nucleic acid-binding protein EngD [Amphibacillus
xylanus NBRC 15112]
gi|407728532|dbj|BAM48530.1| GTP-dependent nucleic acid-binding protein EngD [Amphibacillus
xylanus NBRC 15112]
Length = 366
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDHRLSKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFQDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP +D++ INLEL+ +DL+ I KR+++++K + KD KDA E L K++ A
Sbjct: 120 DPIADIETINLELILADLETISKRIDRVEKLARQKD-----KDAIFEFEILSKLRDAFEV 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
+PARS+ D + +K L LLT KP++YVANV+E + D NP+V +V A Q+
Sbjct: 175 ERPARSIEFTDEQIKYVKGLHLLTQKPVLYVANVSEDGIQDADQNPYVQKVREYAEQEQA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA+VE+E+ EL EE+ +L LG+ ESGL LIR+TY LLGL TYFT+GE+E +
Sbjct: 235 EVVVISAKVESEIAELDGEEKQMFLEELGIPESGLDQLIRATYHLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R G APQAAG+IH+DFE+GFIRAETV+YDD + AGS+A ARE+G +R EGK+YIV
Sbjct: 295 AWTFRKGTKAPQAAGIIHTDFERGFIRAETVSYDDLLDAGSMAVARERGKVRLEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVIHFRFNV 366
>gi|159903753|ref|YP_001551097.1| GTP-binding protein [Prochlorococcus marinus str. MIT 9211]
gi|159888929|gb|ABX09143.1| probable GTP-binding protein [Prochlorococcus marinus str. MIT
9211]
Length = 393
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 225/377 (59%), Positives = 286/377 (75%), Gaps = 5/377 (1%)
Query: 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL 106
F+ S+ + L+ GI+GLPNVGKSTLFNA+V N +AQAANFPFCTIEPN+G VAVPD RL
Sbjct: 22 FAYRSRAFLMLKVGIIGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNIGTVAVPDERL 81
Query: 107 HVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND 166
++L+ LS S++ + A +EFVDIAGLV+GASQGEGLGNKFL++IREVD+I+ VVRCFED +
Sbjct: 82 NLLAALSSSKEIISARIEFVDIAGLVEGASQGEGLGNKFLANIREVDAIVHVVRCFEDEN 141
Query: 167 IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQ 226
++HV+G VDP D+++INLEL SDL QIEKR E+L+K + ++L E AALE+I
Sbjct: 142 VIHVSGSVDPIRDIEIINLELGLSDLAQIEKRKERLQKQIRINKDAQL---EYAALERIN 198
Query: 227 QALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 286
L G AR V L D ER +K L LLT KPIIY +N+ E D+A N + +V + A
Sbjct: 199 LTLQQGGAAREVDLQDEERILVKPLGLLTSKPIIYASNLTEDDIAI--GNAYSTKVNDFA 256
Query: 287 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 346
S V ISAQVE+EL +L +ER++YL LGV E GL +LIR++Y LLGL+TYFT+G
Sbjct: 257 VSQGSQNVKISAQVESELIDLGEQERLDYLNDLGVKEGGLQSLIRTSYDLLGLQTYFTTG 316
Query: 347 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEG 406
EKE++AWTI+ GMTAPQAAGVIH+DFE+GFIRA+T+ Y + AGS A+ KG LRSEG
Sbjct: 317 EKESRAWTIKQGMTAPQAAGVIHTDFERGFIRAQTIGYRKLLEAGSFVEAKSKGWLRSEG 376
Query: 407 KDYIVQEGDVMLFRFNV 423
KDY+V+EGDVM F FNV
Sbjct: 377 KDYVVEEGDVMEFLFNV 393
>gi|88808999|ref|ZP_01124508.1| hypothetical protein WH7805_04886 [Synechococcus sp. WH 7805]
gi|88786941|gb|EAR18099.1| hypothetical protein WH7805_04886 [Synechococcus sp. WH 7805]
Length = 363
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/367 (65%), Positives = 282/367 (76%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+V N +AQAANFPFCTIEPNVG VAVPD RL +LS LS S
Sbjct: 2 LKAGIVGLPNVGKSTLFNALVANAQAQAANFPFCTIEPNVGTVAVPDSRLQLLSDLSSSA 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +P +EFVDIAGLVKGASQGEGLGNKFL++IREVD+I+ V+RCFED+D++HV+G V P
Sbjct: 62 EIIPTRMEFVDIAGLVKGASQGEGLGNKFLANIREVDAIVHVIRCFEDDDVIHVSGAVGP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D +VINLEL +DL QIEKR E+LKK + SK E AALE+IQ L G AR
Sbjct: 122 ARDAEVINLELGLADLSQIEKRRERLKK---QVRTSKEAQVEDAALERIQVVLEQGGAAR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
SV L+D E +K L LLT KPIIY NV+E DLA N E++ LA+ + V I
Sbjct: 179 SVELSDEEALMVKPLGLLTAKPIIYATNVSEDDLA--AGNAFCEEIVALAAKEGAETVRI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQVEAEL EL EER +YL LGV+E GL +LIR+TY LLGLRTYFT+GEKET+AWT +
Sbjct: 237 SAQVEAELVELGDEERQDYLDGLGVTEGGLQSLIRATYRLLGLRTYFTTGEKETRAWTFK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
AGMTAPQAAGVIH+DFE+GFIRA+T++ D + AGSL AR KG LRSEGK+Y+V EGDV
Sbjct: 297 AGMTAPQAAGVIHTDFERGFIRAQTISTDKLLEAGSLVEARNKGWLRSEGKEYVVDEGDV 356
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 357 MEFLFNV 363
>gi|223940694|ref|ZP_03632533.1| GTP-binding protein YchF [bacterium Ellin514]
gi|223890621|gb|EEF57143.1| GTP-binding protein YchF [bacterium Ellin514]
Length = 367
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/369 (60%), Positives = 272/369 (73%), Gaps = 5/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAV KAQAAN+PFCTI+PNVGIV VPD RL VL ++K+
Sbjct: 2 LKAGIVGLPNVGKSTLFNAVTRTRKAQAANYPFCTIDPNVGIVTVPDSRLEVLKNIAKTT 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA+VEFVDIAGLVKGAS GEGLGNKFL+HIREVD+I+QVVRCF+D DI HV G VDP
Sbjct: 62 VIIPAAVEFVDIAGLVKGASAGEGLGNKFLTHIREVDAIVQVVRCFDDPDIHHVTGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ IN ELV +DL+ ++K+ + K K D ++ +DA A E I A GKP
Sbjct: 122 VRDIETINTELVLADLEAVKKKRASIGKDVKRGDKEAVAQDAVLAKFEPILDA---GKPG 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGRV 294
+V L ++ K LLT KP I+ NV ESDLA NP+V +V + + L V
Sbjct: 179 LTVELTPEDKVISKSFYLLTDKPTIFACNVKESDLATADQNPYVLKVREYVKTHLACEAV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ+E++L +L EE +L LGV ESG+G LIR+TY LLGLRTYFT+GEKE +AWT
Sbjct: 239 VISAQIESDLIDLSDEEAKAFLKELGVEESGVGALIRATYHLLGLRTYFTAGEKEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIHSDFE+GFI+AETVAY+D V GS+A AREKGL R EGK+YIV++G
Sbjct: 299 IHVGNTAPQAAGVIHSDFERGFIKAETVAYEDLVKCGSVAVAREKGLYRMEGKEYIVKDG 358
Query: 415 DVMLFRFNV 423
DVMLF+FNV
Sbjct: 359 DVMLFKFNV 367
>gi|410458100|ref|ZP_11311863.1| GTP-binding protein YchF [Bacillus azotoformans LMG 9581]
gi|409931728|gb|EKN68704.1| GTP-binding protein YchF [Bacillus azotoformans LMG 9581]
Length = 366
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 278/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTQLVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADDEITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++ INLEL+ +DL+ ++KR++++ GK + K AE L +++A +GK
Sbjct: 120 DPISDIETINLELILADLETVDKRIDRV--GKLAKQKDKDAAAEHEILVILKEAFEEGKM 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ + + +K L LLT+KP++YVANV E ++ADP N +V +V A + +
Sbjct: 178 ARSIEFTEEQLKLVKNLHLLTIKPMLYVANVGEDEVADPSGNEYVQKVHEFAKSDNAEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E+E+ EL EE+ +L LG+ ESGL LI++ YSLLGL TYFT+GE+E +AWT
Sbjct: 238 VICAKIESEIAELDGEEKQMFLEELGIKESGLDQLIKAAYSLLGLATYFTAGEQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AG+IH+DFE+GFIRAETV+Y+D +A GS+ AARE G +R EGK+Y+VQ+G
Sbjct: 298 FKKGMKAPQCAGIIHTDFERGFIRAETVSYEDLLAGGSMTAAREAGKVRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|390457272|ref|ZP_10242800.1| GTP-binding protein YchF [Paenibacillus peoriae KCTC 3763]
Length = 366
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 281/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +D++ ++KR+E+ +K ++ ++ E LE+I+++L KP
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRKNMKGGNKQYAQEVE--VLERIKESLYADKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D +R ++ L LLTMKP++Y ANV+E + + SNP+V +V A + V
Sbjct: 178 ARSVELSDEDRVIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G LR EGK+Y+VQ+G
Sbjct: 298 IHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|334128576|ref|ZP_08502460.1| GTP-dependent nucleic acid-binding protein EngD [Centipeda
periodontii DSM 2778]
gi|333386771|gb|EGK57979.1| GTP-dependent nucleic acid-binding protein EngD [Centipeda
periodontii DSM 2778]
Length = 368
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/369 (59%), Positives = 275/369 (74%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKRM K+ K S SK AE AALE+++ AL +GKPA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMAKVTK--LLKSGSKEAKAEHAALERLKSALDEGKPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L+D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+ + V
Sbjct: 180 REVELSDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKEYAARTGAEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+SESGL LI +SLLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDAEEAAIFLEDLGLSESGLDRLIHGAFSLLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGL+R EGKDY++++G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLVRLEGKDYVMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|310644401|ref|YP_003949160.1| GTPase translation factor [Paenibacillus polymyxa SC2]
gi|309249352|gb|ADO58919.1| GTPase probable translation factor-like protein [Paenibacillus
polymyxa SC2]
gi|392305083|emb|CCI71446.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa M1]
Length = 366
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 281/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +D++ ++KR+E+ +K ++ ++ E LE+I+++L KP
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRKNMKGGNKQYAQEVE--VLERIKESLYADKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L++ E+ I+ L LLTMKP++Y ANV+E + + SNP+V +V A + V
Sbjct: 178 ARSVELSEDEKLIIRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VEAE+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVEAEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G LR EGK+Y+VQ+G
Sbjct: 298 IHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|339006739|ref|ZP_08639314.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
laterosporus LMG 15441]
gi|338775948|gb|EGP35476.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
laterosporus LMG 15441]
Length = 366
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL+ L+ +
Sbjct: 1 MGMSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLNKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL+HIREVD+I QVVRCFED +IVHV GKV
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLAHIREVDAIAQVVRCFEDQNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLELVF+DLD + +R++++ +K K+ D ++K+ E LEK++ A +G+
Sbjct: 120 DPLSDIETINLELVFADLDSVTRRIDRMGRKAKSGDKEAKV---ELEVLEKLKAAFEEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L + E I+ L LLT+KP++YV NVAE + + NPHV V A +
Sbjct: 177 AARGVELTEDELKIIRDLHLLTIKPMLYVCNVAEDGIHNADENPHVQAVRKHAESEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VE+E+ EL E++ +L LG+ ESGL LIR+ YSLLGL TYFT+G +E +AW
Sbjct: 237 VIISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIRAAYSLLGLITYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R APQAAGVIH+DFE+GFIRAE VAYDD VAAG++ AAREKG R EGK+Y+V++
Sbjct: 297 TVRRETKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGNVNAAREKGKYRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|167745325|ref|ZP_02417452.1| hypothetical protein ANACAC_00016 [Anaerostipes caccae DSM 14662]
gi|167655046|gb|EDR99175.1| GTP-binding protein YchF [Anaerostipes caccae DSM 14662]
Length = 376
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 283/370 (76%), Gaps = 6/370 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIV VPD RL VLS + S
Sbjct: 11 TMKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVTVPDKRLDVLSEMYHS 69
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K +PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G V
Sbjct: 70 KKVIPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENIVHVDGSVS 129
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D++ IN EL+FSD++ +++R+ K KKG +++ +S ++ E LE+++ L DGK A
Sbjct: 130 PLRDIETINFELIFSDIEVLDRRIAKSKKG-SRNDKSLAREVE--LLERVKAHLEDGKLA 186
Query: 236 RSVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSGR 293
++ +D E I C LLT+KP+I+ ANV E DL D SN VNEV A D+ +G
Sbjct: 187 KTFVTDDEEEQEILDSCNLLTIKPVIFAANVCEDDLMDDAASNEFVNEVRTYAKDVDAGV 246
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I AQ+E E+ EL EER E+L LG+SESGL LI ++YSLLGL +Y TSGE ET+AW
Sbjct: 247 FVICAQIEQEIAELDDEERKEFLEDLGLSESGLDKLISASYSLLGLISYLTSGEDETRAW 306
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IH+DFE+GFIRAE V+YDD V GS+AAAREKGL+R EGK+Y+VQ+
Sbjct: 307 TITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLVENGSIAAAREKGLVRQEGKEYVVQD 366
Query: 414 GDVMLFRFNV 423
GDV++F+FNV
Sbjct: 367 GDVIVFKFNV 376
>gi|375310997|ref|ZP_09776258.1| gtpase translation factor [Paenibacillus sp. Aloe-11]
gi|375076975|gb|EHS55222.1| gtpase translation factor [Paenibacillus sp. Aloe-11]
Length = 366
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 281/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +D++ ++KR+E+ +K ++ ++ E LE+I+++L KP
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRKNMKGGNKQYAQEVE--VLERIKESLYADKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D +R ++ L LLTMKP++Y ANV+E + + SNP+V +V A + V
Sbjct: 178 ARSVELSDEDRLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVREFAVAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIHSDFE+GFIRAE V+YDD VAAGS+ A+E+G LR EGK+Y+VQ+G
Sbjct: 298 IHKGTKAPGAAGVIHSDFERGFIRAEVVSYDDLVAAGSMNGAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|149182307|ref|ZP_01860786.1| translation-associated GTPase [Bacillus sp. SG-1]
gi|148849999|gb|EDL64170.1| translation-associated GTPase [Bacillus sp. SG-1]
Length = 366
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGIVEVPDYRLDKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VINLEL+ +DL+ ++KR+ +++K K KD ++ E L K+++A +G+
Sbjct: 120 NPLDDIEVINLELILADLESVDKRIARVQKLAKQKDKEAAY---EHEILLKLKEAFEEGR 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V + + +K L LLT+KP++YVANV+E D+ADP N +V +V A +
Sbjct: 177 PARTVEFTEEQMKVVKGLHLLTIKPVLYVANVSEDDIADPSDNEYVQQVREFAKGDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIESEIAELDDEEKAMFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IH+DFEKGFIRAETV+YDD VA G++ AARE G +R EGK+YIV++
Sbjct: 297 TFRTGMKAPECAGIIHTDFEKGFIRAETVSYDDLVANGTMGAAREAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|345020631|ref|ZP_08784244.1| GTP-binding protein YchF [Ornithinibacillus scapharcae TW25]
Length = 366
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 286/372 (76%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGMVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D+++INLEL+ +DL+ + KR+++++K K KD KDA E L KI+ L +
Sbjct: 120 DPIDDIEIINLELILADLETVNKRIQRVEKLAKQKD-----KDALVEYEVLSKIKTGLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ D ++ +K L LLT KP++YVANV E ++ADP +NP+V +V + A+ +
Sbjct: 175 EKPARALEFTDEQQKLVKGLHLLTSKPMLYVANVGEDEVADPDANPNVQKVRDYAAKEGA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E++EL +E+ +L LG+SESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVICARIEEEISELDQDEKEMFLEELGISESGLDKLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R G+ APQAAG+IHSDFE+GFIRAETV+YDD + AGS+ AREKG +R EGK+YIV
Sbjct: 295 AWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYDDLLEAGSMVHAREKGKVRLEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|317473243|ref|ZP_07932540.1| GTP-binding protein YchF [Anaerostipes sp. 3_2_56FAA]
gi|316899338|gb|EFV21355.1| GTP-binding protein YchF [Anaerostipes sp. 3_2_56FAA]
Length = 365
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 282/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIV VPD RL VLS + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVTVPDKRLDVLSEMYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G V P
Sbjct: 60 KVIPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENIVHVDGSVSP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ IN EL+FSD++ +++R+ K KKG +++ +S ++ E LE+++ L DGK A+
Sbjct: 120 LRDIETINFELIFSDIEVLDRRIAKSKKG-SRNDKSLAREVE--LLERVKAHLEDGKLAK 176
Query: 237 SVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSGRV 294
+ +D E I C LLT+KP+I+ ANV E DL D SN VNEV A D+ +G
Sbjct: 177 TFVTDDEEEQEILDSCNLLTIKPVIFAANVCEDDLMDDAASNEFVNEVRTYAKDVDAGVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL EER E+L LG+SESGL LI ++YSLLGL +Y TSGE ET+AWT
Sbjct: 237 VICAQIEQEIAELDDEERKEFLEDLGLSESGLDKLISASYSLLGLISYLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAG IH+DFE+GFIRAE V+YDD V GS+AAAREKGL+R EGK+Y+VQ+G
Sbjct: 297 ITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLVENGSIAAAREKGLVRQEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
DV++F+FNV
Sbjct: 357 DVIVFKFNV 365
>gi|121535350|ref|ZP_01667162.1| GTP-binding protein YchF [Thermosinus carboxydivorans Nor1]
gi|121306042|gb|EAX46972.1| GTP-binding protein YchF [Thermosinus carboxydivorans Nor1]
Length = 368
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 283/372 (76%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERLWTLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K P ++ FVDIAGLVKGASQGEGLGNKFLSHIR+VD++ QVVRCF D +I HV G
Sbjct: 60 YKPRKTTPTAMRFVDIAGLVKGASQGEGLGNKFLSHIRQVDAVAQVVRCFADANITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ + KR E+ +K KA D +++ +E A LE+++ L +
Sbjct: 120 ALDPLRDIEIINTELCLADLETVAKRFERTQKMAKAGDKKAQ---SEFAVLERLRTGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PAR + L++ E+ ++ L LLT+KP+++VANV+E D+A P +NP+V V A+ +
Sbjct: 177 GQPARRLGLSEEEQALVRDLNLLTLKPVLFVANVSEDDVAAPDANPYVQAVKQYAAGEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA++EAE+ ELP EE ++L LG++ESGL LI++ Y LLGL T+FT+GE+E +
Sbjct: 237 EVIAVSAKLEAEIAELPDEEAKQFLVELGLAESGLDKLIKAGYKLLGLITFFTAGEQEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTIR G APQAAG IHSD E+GFIRAE V+Y D +AAGS AAREKGL+R EGKDY++
Sbjct: 297 AWTIRQGTKAPQAAGKIHSDIERGFIRAEVVSYTDLMAAGSYGAAREKGLIRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 357 QDGDVVYFRFNV 368
>gi|299541780|ref|ZP_07052103.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZC1]
gi|424740061|ref|ZP_18168471.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZB2]
gi|298725518|gb|EFI66159.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZC1]
gi|422946284|gb|EKU40697.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
fusiformis ZB2]
Length = 366
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ + E+ L KI++ L +GK
Sbjct: 120 DPIDDIEVINLELALADLESVDKRLQRVSKMAKQKDKEAMI---EEPVLLKIKEQLENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 177 PARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVKKVREYASAESAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +AW
Sbjct: 237 ITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G +R EGK+Y VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKVRLEGKEYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|297544906|ref|YP_003677208.1| GTP-binding protein YchF [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
gi|296842681|gb|ADH61197.1| GTP-binding protein YchF [Thermoanaerobacter mathranii subsp.
mathranii str. A3]
Length = 363
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 272/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + K Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIEKPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGL KGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLTKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF---EVEVLEKIKKGLDEGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S + I
Sbjct: 177 ALQFTEEEKSFVSQLMLLTSKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+R EGKDY++Q+GDV
Sbjct: 297 KGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLMRLEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|347751719|ref|YP_004859284.1| GTP-binding protein YchF [Bacillus coagulans 36D1]
gi|347584237|gb|AEP00504.1| GTP-binding protein YchF [Bacillus coagulans 36D1]
Length = 366
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDERLEKLTELYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ ++KR+ +++K K KD ++ AE L K++ A K
Sbjct: 120 DPIDDIETINLELILADLETVDKRIGRVEKIAKQKDKEAV---AEYEVLTKLKAAFEAEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V L + ++ +K LLT KP++YVANV E D+ DP +NP+V +V A +
Sbjct: 177 PARAVELTEDQQKIVKGFQLLTSKPVLYVANVGEDDIQDPSANPYVGKVREYAKQEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ EL +E+ +L LG+ ESGL LI++ YSLLGL TYFT+GE E +AW
Sbjct: 237 IVICARIEEEIAELDDDEKKMFLTELGIQESGLDQLIKAAYSLLGLATYFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFEKGFIRAETV+Y+D + GS+AAARE G +R EGKDY+VQ+
Sbjct: 297 TFKKGMKAPQCAGIIHSDFEKGFIRAETVSYEDLIKYGSVAAAREAGKVRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|403385763|ref|ZP_10927820.1| GTP-dependent nucleic acid-binding protein [Kurthia sp. JC30]
Length = 366
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGASQGEGLGNKFLSHIREVD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASQGEGLGNKFLSHIREVDAITQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++VINLEL+ +DL+ ++KR K+ K K KD +S AE A LEK+++A +
Sbjct: 120 DPISDIEVINLELILADLESVDKRYAKVSKLAKQKDKESM---AEAAVLEKVKEAFANEM 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L+D E+ IK L LLT+KP +YVANV+E ++A+ N +V +V A+ +
Sbjct: 177 PARSVDLDDEEKKIIKGLSLLTLKPALYVANVSEDEVANAEDNEYVKQVREYAAKEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ +L EE+ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIEEEIAQLDDEEKAMFLEELGIEESGLDKLIKAAYSLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETV+++D V GS AA+E G LR EGK+Y+V++
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVSFEDLVEYGSKTAAKEAGRLRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDVM F FNV
Sbjct: 357 GDVMEFLFNV 366
>gi|452992132|emb|CCQ96450.1| putative GTPase with RNA binding site [Clostridium ultunense Esp]
Length = 367
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 288/369 (78%), Gaps = 5/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
S GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL VL+ L
Sbjct: 3 SRSCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLTVLTRLVTP 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
Q+ VP + EFVDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED +I HV GKVD
Sbjct: 62 QRTVPTTFEFVDIAGLVEGASKGEGLGNRFLSHIREVDAIVHVVRCFEDVNITHVAGKVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+ +INLEL+ +DL+ +EKR EK+KK K+ D + +L E A LE++++ G+
Sbjct: 122 PLRDIQIINLELILADLETVEKRFEKVKKMLKSGDKKVQL---EMALLERLKEHFDQGRS 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+++++ ER +++L LLT+KP++YVANV E++ AD ++P+V +V++ A+ + +
Sbjct: 179 ARSLSVDEEERKILRELHLLTLKPVLYVANVGENEAADATNHPYVKQVIDFAAGEGAEVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ISA+VE+E+ EL E++ +L LG+ ESGL LI++ Y LLGL T+FT+G +E +AWT
Sbjct: 239 SISAKVESEIAELEGEDKQLFLEELGLKESGLDRLIKAAYHLLGLITFFTAGPQEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AG APQAAGVIHSDFE+GFIRAE V+Y+D + AGS+A ARE+GLLR EGKDY +++G
Sbjct: 299 IPAGTKAPQAAGVIHSDFERGFIRAEVVSYEDLIHAGSMAKAREQGLLRLEGKDYEMKDG 358
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 359 DVVYFRFNV 367
>gi|354559377|ref|ZP_08978627.1| GTP-binding protein YchF [Desulfitobacterium metallireducens DSM
15288]
gi|353542966|gb|EHC12426.1| GTP-binding protein YchF [Desulfitobacterium metallireducens DSM
15288]
Length = 366
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 277/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVHVPDSRLGVLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D++++HV G V
Sbjct: 60 PDRIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDSNVIHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D++ I LEL+ +DL+ IEKR+EK +K S K E L K+++A +GK
Sbjct: 120 DPKRDIETIQLELILADLESIEKRLEKSEK--LLKSGDKKAHVEVELLTKLKEAFDEGKA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS++ D E++ +K + LL+MKPI+Y ANV+E DL N +V +V +A++ S V
Sbjct: 178 ARSLSYTDEEKEILKTISLLSMKPILYAANVSEEDLTRGEENSYVQKVREIATEENSEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E+E+ EL EE+ +L LG+ ESGL LIR+ + LLGL T+FT+G E KAWT
Sbjct: 238 MVCAKIESEIAELEDEEKQAFLEDLGLEESGLDRLIRAAFHLLGLMTFFTAGPMEVKAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAG IH+DFE+GFIRAE V+Y DFVA G L AR+KGL+R EGKDY++ +G
Sbjct: 298 IRRGTKAPQAAGTIHTDFERGFIRAEVVSYSDFVAMGGLNGARDKGLVRLEGKDYVMADG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIVHFRFNV 366
>gi|336115636|ref|YP_004570403.1| GTP-binding protein YchF [Bacillus coagulans 2-6]
gi|335369066|gb|AEH55017.1| GTP-binding protein YchF [Bacillus coagulans 2-6]
Length = 366
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDERLEKLTELYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ ++KR+ +++K K KD ++ AE L K++ A K
Sbjct: 120 DPIDDIETINLELILADLETVDKRIGRVEKIAKQKDKEAV---AEYEVLAKLKAAFEAEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V L + ++ +K LLT KP++YVANV E D+ DP +NP+V +V A +
Sbjct: 177 PARAVELTEDQQKIVKGFQLLTSKPVLYVANVGEDDIQDPSANPYVGKVREYAKQEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ EL +E+ +L LG+ ESGL LI++ YSLLGL TYFT+GE E +AW
Sbjct: 237 IVICARIEEEIAELDDDEKKMFLTELGIRESGLDQLIKAAYSLLGLATYFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFEKGFIRAETV+Y+D + GS+AAARE G +R EGKDY+VQ+
Sbjct: 297 TFKKGMKAPQCAGIIHSDFEKGFIRAETVSYEDLIEYGSVAAAREAGKVRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|169830188|ref|YP_001700346.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
sphaericus C3-41]
gi|168994676|gb|ACA42216.1| GTP-dependent nucleic acid-binding protein [Lysinibacillus
sphaericus C3-41]
Length = 366
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ + E+ L KI++ L +GK
Sbjct: 120 DPIDDIEVINLELALADLESVDKRIQRVSKMAKQKDKEAMI---EEPVLLKIKEQLENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 177 PARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVQKVREYASAEGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +AW
Sbjct: 237 ITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G +R EGK+Y VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKVRLEGKEYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|317130992|ref|YP_004097274.1| GTP-binding protein YchF [Bacillus cellulosilyticus DSM 2522]
gi|315475940|gb|ADU32543.1| GTP-binding protein YchF [Bacillus cellulosilyticus DSM 2522]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDYRLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFNDENITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ VINLEL+ +DL+ +EKR+ K+ K+ K KD QS AE L+K++ A + K
Sbjct: 120 DPIRDIQVINLELILADLETVEKRIGKVEKQAKQKDKQSM---AEFEVLDKLRNAFEEEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV LN + K L LLTMKP++YVANV+E ++ D NP+V +V A++ S
Sbjct: 177 PARSVELNTEQEKIAKGLHLLTMKPVLYVANVSEEEILDVSDNPYVQKVKAFAAEEGSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ E+L LG++ESGL LI++ Y LLGL TYFT+G++E +AW
Sbjct: 237 IVVCAKIESEIAELDGEEKEEFLNELGIAESGLDQLIKAAYQLLGLETYFTAGKQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAGVIH+DFE+GFIRAE V++DD + AGS+ A+E G +R EGKDYIVQ+
Sbjct: 297 TIKKGTKAPQAAGVIHTDFERGFIRAEIVSFDDLIEAGSMTVAKENGKVRLEGKDYIVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|398814755|ref|ZP_10573433.1| GTP-binding protein YchF [Brevibacillus sp. BC25]
gi|398035843|gb|EJL29069.1| GTP-binding protein YchF [Brevibacillus sp. BC25]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLEKLTKIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASRGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+F+DLD +++R++++ +K K+ D +SK E LEK++ A +G+
Sbjct: 120 DPLSDIETINLELIFADLDSVDRRIDRIARKVKSGDKESK---QELDVLEKLKAAFEEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+D ER I+ L LLT+KP++YV NVAE + D SNPHV V A+ +
Sbjct: 177 SARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADSNPHVQTVREHAASEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 VVISAKVEAEIAELEGEDKEMFLEELGLTESGLDRLIRAAYKLLGLVTYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G AP AAGVIH+DFE+GFIRAE +AYD V AGS+A ARE+G R EGK+Y+V +
Sbjct: 297 TIRQGTKAPGAAGVIHTDFERGFIRAEVIAYDHLVDAGSVAVARERGKYRLEGKEYVVAD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|126651980|ref|ZP_01724172.1| translation-associated GTPase [Bacillus sp. B14905]
gi|126591249|gb|EAZ85358.1| translation-associated GTPase [Bacillus sp. B14905]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL+HIREVD+I QVVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLAHIREVDAICQVVRCFVDENITHVSGAV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VINLEL +DL+ ++KR++++ K K KD ++ + E+ L KI++ L +GK
Sbjct: 120 DPIDDIEVINLELALADLESVDKRIQRVSKMAKQKDKEAMI---EEPVLLKIKEQLENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D E IK L LLT+KP++YVANV+E ++AD +N +V +V AS +
Sbjct: 177 PARAAELSDDELKVIKGLHLLTIKPMLYVANVSEDEVADADNNEYVKKVREYASAEGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+TI A++E E++EL EE+ +L LG+ ESGL LIR++Y LLGL TYFT+G +E +AW
Sbjct: 237 ITICAKIEEEISELDDEEKAMFLEELGIKESGLDQLIRTSYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAETVAYDD + AGS AAA+E G +R EGK+Y VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHTDFERGFIRAETVAYDDLLEAGSQAAAKEAGKVRLEGKEYEVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|389574628|ref|ZP_10164688.1| GTP-binding protein YchF [Bacillus sp. M 2-6]
gi|388425750|gb|EIL83575.1| GTP-binding protein YchF [Bacillus sp. M 2-6]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 282/370 (76%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE LEK++ A GK
Sbjct: 120 DPVSDIETINLELILADLETVEKRLTRVSKLAKQKDKEAV---AEFDILEKLKDAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV D ++ +KQL LLT KPI+YVANV+E ++AD N +V ++ AS +
Sbjct: 177 SARSVEFTDEQQKLVKQLHLLTSKPILYVANVSEDEVADQDGNEYVQQIREFASGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G +R EGK+YIV++
Sbjct: 297 TFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|384044191|ref|YP_005492208.1| GTPase [Bacillus megaterium WSH-002]
gi|345441882|gb|AEN86899.1| GTPase probable translation factor-like protein [Bacillus
megaterium WSH-002]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A +
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY---EYEVLEKLKNAFESDQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 177 PARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVREYAASEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +AW
Sbjct: 237 IVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G +R EGK+YIV++
Sbjct: 297 TFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|308071170|ref|YP_003872775.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa E681]
gi|305860449|gb|ADM72237.1| GTP-dependent nucleic acid-binding protein engD [Paenibacillus
polymyxa E681]
Length = 366
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 281/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +D++ ++KR+E+ +K ++ ++ E LE+I++ L KP
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRKNMKGGNKQYTQEVE--VLERIKETLYADKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ L+D ER ++ L LLTMKP++Y ANV+E + + SNP+V +V + A + V
Sbjct: 178 ARSLELSDEERLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVRDFAVAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIH+DFE+GFIRAE V+Y+D VAAGS+ A+E+G LR EGK+Y+VQ+G
Sbjct: 298 IHKGTKAPGAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNGAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|429735969|ref|ZP_19269889.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156527|gb|EKX99156.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 374
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 219/369 (59%), Positives = 275/369 (74%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 9 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 67
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 68 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 127
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKRM K+ K S SK AE AALE+++ AL +GKPA
Sbjct: 128 PLHDIDIIETELCLADLEAVEKRMAKVT--KLLKSGSKEAKAEHAALERLKTALDEGKPA 185
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L+D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+ + V
Sbjct: 186 REVELSDEEQAILRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKGYAARTGAEVV 245
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+SESGL LI +SLLGL+T+ T+GE E +AWT
Sbjct: 246 TVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFSLLGLQTFLTAGEDECRAWT 305
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V GS+AAAR+KGL+R EGK+Y++++G
Sbjct: 306 ITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVTLGSVAAARDKGLVRLEGKEYVMRDG 365
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 366 DVVNFRFNV 374
>gi|294501977|ref|YP_003565677.1| GTP-binding protein EngD [Bacillus megaterium QM B1551]
gi|294351914|gb|ADE72243.1| GTP-binding protein EngD [Bacillus megaterium QM B1551]
Length = 366
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A +
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY---EYEILEKLKNAFESDQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 177 PARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVREYAASEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +AW
Sbjct: 237 IVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G +R EGK+YIV++
Sbjct: 297 TFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|295707328|ref|YP_003600403.1| GTP-binding protein EngD [Bacillus megaterium DSM 319]
gi|294804987|gb|ADF42053.1| GTP-binding protein EngD [Bacillus megaterium DSM 319]
Length = 366
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICHVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ +++K K KD ++ E LEK++ A +
Sbjct: 120 DPISDIETINLELILADLETVEKRIGRVQKMAKQKDKEAMY---EYEILEKLKNAFESDQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V+ + + +KQ LLT+KPI+YVANV+E ++AD +N +V +V A+ +
Sbjct: 177 PARAVSFTEEQMKLVKQFHLLTIKPILYVANVSEDEVADASANEYVAKVRQYAASEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ +SGL L+R+ Y LLGL TYFT+GE+E +AW
Sbjct: 237 IVVCARIESEIAELEGEEKAMFLEELGIEQSGLDQLVRAAYDLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM AP+ AG+IH+DFE+GFIRAETV+Y+D +AA ++ AARE G +R EGK+YIV++
Sbjct: 297 TFTQGMKAPECAGIIHTDFERGFIRAETVSYEDLLAAKTMGAAREAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|374320834|ref|YP_005073963.1| GTP-binding protein YchF [Paenibacillus terrae HPL-003]
gi|357199843|gb|AET57740.1| GTP-binding protein YchF [Paenibacillus terrae HPL-003]
Length = 366
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 282/369 (76%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L
Sbjct: 1 MALKAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV+GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HV+GK+
Sbjct: 60 PNKTVPTAFEFVDIAGLVRGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ INLEL+ +D++ ++KR+E+ +K ++ ++ E LE+I+++L KP
Sbjct: 120 DPISDIQTINLELILADIESVDKRIERSRKNMKGGNKQYTQEVE--VLERIKESLYADKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E+ ++ L LLTMKP++Y ANV+E + + SNP+V +V + A + V
Sbjct: 178 ARSVELSDEEQLIVRDLHLLTMKPVLYAANVSEDGVTEADSNPYVQKVRDFAVAENAEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL E++ +L LG++ESGL LI++ Y LLGL TYFT+G +E +AWT
Sbjct: 238 PISAKVESEIAELEGEDKAMFLEELGLAESGLNRLIKAAYRLLGLYTYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIH+DFE+GFIRAE V+Y+D VAAGS+ A+E+G LR EGK+Y+VQ+G
Sbjct: 298 IHKGTKAPGAAGVIHTDFERGFIRAEVVSYNDLVAAGSMNGAKERGQLRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 358 DVMHFRFNV 366
>gi|421874903|ref|ZP_16306502.1| GTPase of unknown function family protein [Brevibacillus
laterosporus GI-9]
gi|372456100|emb|CCF16051.1| GTPase of unknown function family protein [Brevibacillus
laterosporus GI-9]
Length = 366
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL+ L+ +
Sbjct: 1 MGSSVGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLNKLTEIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL+HIREVD+I QVVRCFED +IVHV GKV
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASKGEGLGNQFLAHIREVDAIAQVVRCFEDQNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLELVF+DLD + +R++++ +K K+ D ++K+ E LEK++ A +G+
Sbjct: 120 DPLSDIETINLELVFADLDSVTRRIDRMGRKAKSGDKEAKV---ELEVLEKLKAAFEEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR V L + E I+ L LLT+KP++YV NVAE + + NPHV V A +
Sbjct: 177 AARGVELTEDELKIIRDLHLLTIKPMLYVCNVAEDGIHNADENPHVQAVRKHAEAEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VE+E+ EL E++ +L LG+ ESGL LIR+ YSLLGL TYFT+G +E +AW
Sbjct: 237 VIISAKVESEIAELEGEDKEMFLEELGLQESGLDRLIRAAYSLLGLITYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R APQAAGVIH+DFE+GFIRAE VAYDD VAAG++ AAREKG R EGK+Y+V++
Sbjct: 297 TVRRETKAPQAAGVIHTDFERGFIRAEVVAYDDLVAAGNVNAAREKGKYRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|268315605|ref|YP_003289324.1| GTP-binding protein YchF [Rhodothermus marinus DSM 4252]
gi|262333139|gb|ACY46936.1| GTP-binding protein YchF [Rhodothermus marinus DSM 4252]
Length = 366
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 274/369 (74%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M LR GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V VPD RL L+ L+
Sbjct: 1 MPLRCGIVGLPNVGKSTLFNALSRAG-AESANYPFCTIEPNVGVVPVPDERLERLAELAG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K P ++EFVDIAGLV GAS+GEGLGN+FL+HIREVD+IL VVRCFED +IVHV+G V
Sbjct: 60 SAKVTPTTIEFVDIAGLVAGASKGEGLGNQFLAHIREVDAILHVVRCFEDPNIVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+++I EL+ DL+ +E+R+E+ + AK KL++ E A E+++ L G P
Sbjct: 120 DPARDIEIIQTELLLKDLETVERRIERTARA-AKSGDKKLRE-ELAFYERLRDHLSSGAP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR T++D E ++ L LLT+KP++YVANVAESDL + NPHV V +A + V
Sbjct: 178 ARLFTVSDLEAPWLRSLFLLTVKPVLYVANVAESDLPEGEGNPHVATVREIAEKEGAQVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++EA+L EL EER +L LG+ GL L+R+ Y LLGL T+FT G KE +AWT
Sbjct: 238 VICAELEAQLAELDEEERRAFLKELGLERPGLERLVRAAYELLGLITFFTVGPKEARAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G A QAAG+IHSDFE+GFIRAET++Y+D++ GS AAARE G +RSEG+DY+VQ+G
Sbjct: 298 IRRGTRAQQAAGIIHSDFERGFIRAETISYEDYIRYGSEAAAREAGAMRSEGRDYVVQDG 357
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 358 DVILFRFNV 366
>gi|298714678|emb|CBJ27603.1| PYchF, plastid YchF-like GTPase [Ectocarpus siliculosus]
Length = 415
Score = 435 bits (1119), Expect = e-119, Method: Compositional matrix adjust.
Identities = 224/402 (55%), Positives = 286/402 (71%), Gaps = 12/402 (2%)
Query: 26 FTRNANLIGVLGITTTSSRRRFSSA--SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ 83
F + + GV + RR+ S S +M L+ GIVG+PNVGKSTLFNAV E A
Sbjct: 20 FRPPSTIWGVKVAGQAAMRRQVGSPVRSSSTMKLKTGIVGMPNVGKSTLFNAVTEAQGAM 79
Query: 84 AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGN 143
AN+PF TIEPN+G+V VPD RL VL+ ++KS K VP++++F DIAGLVKGAS+GEGLGN
Sbjct: 80 CANYPFATIEPNIGVVEVPDGRLKVLAEINKSVKTVPSTLDFYDIAGLVKGASKGEGLGN 139
Query: 144 KFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203
+FL++IRE D+I+ VVRCFED DI+HV G VDP D+D+IN+EL +D+ Q+EKR++K+
Sbjct: 140 QFLANIRECDAIVHVVRCFEDPDIIHVEGSVDPVRDIDIINIELALADMAQVEKRLQKVA 199
Query: 204 KGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVA 263
K K K +EK L K+ + L +GKP R+V L + E L LLT K +IY
Sbjct: 200 KDK------KATASEKTGLAKLLKVLEEGKPVRTVELTEEEAKDTAYLGLLTAKKVIYAC 253
Query: 264 NVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSE 323
NVA+SDLAD N V+ V A + + V +SAQVE+EL +L E++ E+L SLGVSE
Sbjct: 254 NVADSDLAD--GNAMVDGVRKFAEEEGARVVIVSAQVESELVDLDGEDKQEFLESLGVSE 311
Query: 324 --SGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAET 381
GL L++ Y+ LGL+TYFTSGE ETKAWTI AG TAP+AAGVIHSDFE+GFIRAE
Sbjct: 312 ETCGLRALVKEAYTALGLQTYFTSGETETKAWTIYAGWTAPKAAGVIHSDFERGFIRAEA 371
Query: 382 VAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
+ Y+D V GS AA+EKGLLRSEGK+Y+VQEGDV+ FRFNV
Sbjct: 372 IKYEDLVNCGSEKAAKEKGLLRSEGKEYVVQEGDVLHFRFNV 413
>gi|289578686|ref|YP_003477313.1| GTP-binding protein YchF [Thermoanaerobacter italicus Ab9]
gi|289528399|gb|ADD02751.1| GTP-binding protein YchF [Thermoanaerobacter italicus Ab9]
Length = 363
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/367 (57%), Positives = 271/367 (73%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + K Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIEKPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGL KGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLTKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF---EVEVLEKIKKGLDEGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S + I
Sbjct: 177 ALQFTEEEKSFVSQLMLLTSKPLMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y D V AGS AAARE GL+R EGKDY++Q+GDV
Sbjct: 297 KGTKAPQAAGKIHSDFEKGFIRAEVISYKDLVKAGSQAAAREMGLMRLEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|226315510|ref|YP_002775406.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
brevis NBRC 100599]
gi|226098460|dbj|BAH46902.1| GTP-dependent nucleic acid-binding protein EngD [Brevibacillus
brevis NBRC 100599]
Length = 366
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 216/370 (58%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGASCGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLEKLTQIVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I VVRCFED +I HV G+V
Sbjct: 60 PNKVVPTAFEFVDIAGLVKGASRGEGLGNQFLGHIREVDAIAHVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+F+DLD +++R++++ +K K+ D +SK E LEK++ A +G+
Sbjct: 120 DPLSDIETINLELIFADLDSVDRRIDRIARKVKSGDKESK---QELDVLEKLKAAFEEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+D ER I+ L LLT+KP++YV NVAE + D +NPHV V A+ +
Sbjct: 177 SARSVELDDEERKWIRDLHLLTIKPMLYVCNVAEDGINDADNNPHVQTVRQHAASEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VEAE+ EL E++ +L LG++ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 VVISAKVEAEIAELEGEDKEMFLEELGLTESGLDRLIRAAYKLLGLVTYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G AP AAGVIH+DFE+GFIRAE +AYD V AGS+A ARE+G R EGK+Y+V +
Sbjct: 297 TIRQGTKAPGAAGVIHTDFERGFIRAEVIAYDHLVDAGSVAVARERGKYRLEGKEYVVAD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|89100935|ref|ZP_01173782.1| YyaF [Bacillus sp. NRRL B-14911]
gi|89084344|gb|EAR63498.1| YyaF [Bacillus sp. NRRL B-14911]
Length = 366
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 274/369 (74%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++ INLEL+ +DL+ +EKR+ ++ GK + K AE LE ++ A KP
Sbjct: 120 DPISDIETINLELILADLESVEKRIARV--GKMAKQKDKEAVAELEVLELLKDAFESDKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V + + K L LLT+KP++YVANV E D+ADP SN +V V + A + +
Sbjct: 178 ARTVEFTEEQHKIAKNLHLLTIKPVLYVANVGEDDVADPSSNEYVQSVRDFAEKDNAEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E+E+ EL EE+ +L LG+ ESGL LIRS Y LL L TYFT+G +E +AWT
Sbjct: 238 VVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIRSAYHLLDLATYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
R GM APQ AG+IH+DFE+GFIRAETV YDD + A ++AAA+E G +R EGK+YIV++G
Sbjct: 298 FRKGMKAPQCAGIIHTDFERGFIRAETVHYDDLLEAKTMAAAKEAGKVRLEGKEYIVKDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIHFRFNV 366
>gi|401564312|ref|ZP_10805215.1| GTP-binding protein YchF [Selenomonas sp. FOBRC6]
gi|400188967|gb|EJO23093.1| GTP-binding protein YchF [Selenomonas sp. FOBRC6]
Length = 368
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 218/369 (59%), Positives = 276/369 (74%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL+VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDTRLNVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKRM K+ K S SK AE AALE+++ AL +GKPA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMVKVM--KLLKSGSKEAKAEHAALERLKTALDEGKPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L+D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+ + V
Sbjct: 180 REVELSDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAKNPHVQTVKGYAARTGAEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+SESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V GS+AAAR+KGL+R EGK+Y++++G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVTLGSVAAARDKGLVRLEGKEYVMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|160946373|ref|ZP_02093582.1| hypothetical protein PEPMIC_00333 [Parvimonas micra ATCC 33270]
gi|158447489|gb|EDP24484.1| GTP-binding protein YchF [Parvimonas micra ATCC 33270]
Length = 364
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/368 (57%), Positives = 280/368 (76%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RLH L+ L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGLVNVPDERLHKLTELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA +EF DIAGLVKGAS+GEGLGNKFLSHIREVD+I++V+RCFED +IVHV+G+V+P
Sbjct: 60 KTIPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVDAIVEVIRCFEDENIVHVDGEVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+ INLEL+ SDL+ +EKR+EK +K + K E LEKI L +GK R
Sbjct: 120 LRDVETINLELILSDLELVEKRLEKARKSLKGNKSFK---EEVDLLEKILPVLEEGKSIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
S++ ND E+ +K LL++KPIIYVANV E D+ D G SN +V + + A SG V
Sbjct: 177 SLSFNDNEKAILKNFSLLSVKPIIYVANVNEDDMLDEGKSNEYVKVLNDFAKQENSGIVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQ+E E++EL +E++E+L LG+SESG+ LI+ +Y+LLGL ++ T+G +ET+AWTI
Sbjct: 237 ISAQIEKEISELEDDEQIEFLNDLGISESGVSKLIKESYNLLGLMSFLTAGPEETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G A AAG IHSD ++GFIRAE V YDD ++ GS+ AAREKGL+R EGK+YI+Q+GD
Sbjct: 297 KIGTNAVNAAGKIHSDIQRGFIRAEIVNYDDLISLGSMVAAREKGLVRLEGKEYIMQDGD 356
Query: 416 VMLFRFNV 423
V+ FRFNV
Sbjct: 357 VVYFRFNV 364
>gi|345017951|ref|YP_004820304.1| GTP-binding protein HSR1-like protein [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344033294|gb|AEM79020.1| LOW QUALITY PROTEIN: GTP-binding protein HSR1-related protein
[Thermoanaerobacter wiegelii Rt8.B1]
Length = 363
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/367 (56%), Positives = 272/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIVAVPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVAVPDERLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ +E+R++K K D ++ E LEKI++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVVERRLQKTSKLARNDKKAAF---EVEVLEKIKKGLDEGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S + I
Sbjct: 177 TLQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L +ER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELASLSDDERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+R EGKDY++Q+GD+
Sbjct: 297 KGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLMRLEGKDYVMQDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|352518698|ref|YP_004888015.1| GTP-binding protein [Tetragenococcus halophilus NBRC 12172]
gi|348602805|dbj|BAK95851.1| GTP-binding protein [Tetragenococcus halophilus NBRC 12172]
Length = 366
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDWRLQRLTDLFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K PAS EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV+GK+
Sbjct: 60 PKKTTPASFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVDGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+ +DL+ + K+ +++K K KD + AE A L+KI+ L GK
Sbjct: 120 DPLADIETINLELILADLESVNKQYNRVEKVAKTKDKAAM---AELAVLDKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R++ ++ E+ +K L LLT KP++YVANVAE D+ DP SN +V +V N A+ +
Sbjct: 177 SVRTIEFSEDEQAIVKGLFLLTAKPVLYVANVAEDDVQDPTSNQYVQKVQNFAATENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ AQ+E E+ EL E++ E+L LG+ ESGL LIR++++LLGL TYFT+GE E +AW
Sbjct: 237 ITVCAQIEEEIAELDDEDKAEFLEDLGIKESGLDQLIRASFNLLGLATYFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T G+ APQAAG+IHSDFE+GFIRAETV++ D S+ AA+E G +R EGKDY+VQ+
Sbjct: 297 TFHKGIKAPQAAGIIHSDFERGFIRAETVSFADLDKYESMHAAKEAGRVRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 357 GDVMLFRFNV 366
>gi|345301915|ref|YP_004823817.1| GTP-binding protein YchF [Rhodothermus marinus SG0.5JP17-172]
gi|345111148|gb|AEN71980.1| GTP-binding protein YchF [Rhodothermus marinus SG0.5JP17-172]
Length = 366
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 275/369 (74%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M LR GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V VPD RL L+ L+
Sbjct: 1 MPLRCGIVGLPNVGKSTLFNALSRAG-AESANYPFCTIEPNVGVVPVPDERLERLAELAG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + P ++EFVDIAGLV GAS+GEGLGN+FL+HIREVD+IL VVRCFED +IVHV+G V
Sbjct: 60 SARVTPTTIEFVDIAGLVAGASKGEGLGNQFLAHIREVDAILHVVRCFEDPNIVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+++I EL+ DL+ +E+R+E+ + AK KL++ E A E+++ L G P
Sbjct: 120 DPARDIEIIQTELLLKDLETVERRIERTARA-AKSGDKKLRE-ELAFYERLRDHLSSGAP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR T++D E ++ L LLT+KP++YVANVAESDL + NPHV V +A+ + V
Sbjct: 178 ARLFTVSDLEAPWLRSLFLLTVKPVLYVANVAESDLPEGEGNPHVATVREIAAKEGAQVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++EA+L EL EER +L LG+ GL L+R+ Y LLGL T+FT G KE +AWT
Sbjct: 238 VICAELEAQLAELDEEERRAFLKELGLERPGLERLVRAAYELLGLITFFTVGPKEARAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G A QAAG+IHSDFE+GFIRAET++Y+D++ GS AAARE G +RSEG+DY+VQ+G
Sbjct: 298 IRRGTRAQQAAGLIHSDFERGFIRAETISYEDYIRYGSEAAAREAGAMRSEGRDYVVQDG 357
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 358 DVILFRFNV 366
>gi|229164426|ref|ZP_04292354.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
R309803]
gi|228619031|gb|EEK75929.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
R309803]
Length = 369
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQTVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|229099902|ref|ZP_04230825.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-29]
gi|229106067|ref|ZP_04236682.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-28]
gi|228677353|gb|EEL31615.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-28]
gi|228683517|gb|EEL37472.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-29]
Length = 369
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|392956538|ref|ZP_10322065.1| GTP-binding protein YchF [Bacillus macauensis ZFHKF-1]
gi|391877520|gb|EIT86113.1| GTP-binding protein YchF [Bacillus macauensis ZFHKF-1]
Length = 365
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 217/370 (58%), Positives = 289/370 (78%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RLH L+ + +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLHKLTEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+ILQVVRCFED +I HV+GKV
Sbjct: 60 PKKVVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAILQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VINLEL+F+DL+ +EKR+ +++K K+KD ++ AE + LEKI++AL +
Sbjct: 120 DPIDDIEVINLELIFADLETVEKRVARVEKLAKSKDKEAV---AEFSVLEKIKEALSNEL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L E+ + L LLTMKPI+Y ANV+E DL + G N HV++V + A+ Q+
Sbjct: 177 PARSVDLTPEEKKIVYGLHLLTMKPILYAANVSEEDLLE-GGNEHVDKVRDYAAREQAEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ EL EE++ +L LG+ E+GL LIR++YSLLGL TYFT+G +E +AW
Sbjct: 236 IVICAKIEEEIAELEGEEKIAFLEELGIQEAGLDQLIRASYSLLGLATYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAE VAYDD + AG++ AA+EKG +R EGK+Y +++
Sbjct: 296 TFRKGMKAPQCAGIIHTDFERGFIRAEVVAYDDLMEAGNMGAAKEKGKVRLEGKEYEMKD 355
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 356 GDVVHFRFNV 365
>gi|373855212|ref|ZP_09597958.1| GTP-binding protein YchF [Bacillus sp. 1NLA3E]
gi|372454281|gb|EHP27746.1| GTP-binding protein YchF [Bacillus sp. 1NLA3E]
Length = 366
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 213/372 (57%), Positives = 276/372 (74%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLTKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ EKL K K KD+ + + L K++ A
Sbjct: 120 DPIDDIETINLELILADMETVEKRISRVEKLSKQKDKDAVVEFE-----VLTKLRDAFEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V + + K L LLT+KP++YVANVAE D++DP N +V V + A+ +
Sbjct: 175 EKPARTVEFTEEQMKVAKGLHLLTIKPVLYVANVAEEDVSDPSGNEYVQLVKDFAAKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 235 EVIVICAKIESEIAELEGEEKAMFLQELGIGESGLDQLIRAAYHLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GM APQ AGVIHSDFE+GFIRAETV+YDD +A G++AAARE G +R EGK+Y V
Sbjct: 295 AWTFRKGMKAPQCAGVIHSDFERGFIRAETVSYDDLLAGGNMAAAREAGRVRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|373849825|ref|ZP_09592626.1| GTP-binding protein YchF [Opitutaceae bacterium TAV5]
gi|391227918|ref|ZP_10264125.1| GTP-binding protein YchF [Opitutaceae bacterium TAV1]
gi|372475990|gb|EHP35999.1| GTP-binding protein YchF [Opitutaceae bacterium TAV5]
gi|391223411|gb|EIQ01831.1| GTP-binding protein YchF [Opitutaceae bacterium TAV1]
Length = 367
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 214/368 (58%), Positives = 275/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD R +VL ++K+Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDDRAYVLQKIAKTQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA++E VDIAGLVKGAS+GEGLGN+FL++IREVD+I+QVVRCFED+DI+H G +DP
Sbjct: 62 VVIPAAIEMVDIAGLVKGASKGEGLGNQFLANIREVDAIVQVVRCFEDSDIIHTMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++VI ELV +DLD ++KR+EK KK K+ D +++ AE A E++ L KPA
Sbjct: 122 VRDIEVITTELVLADLDSVQKRLEKTQKKAKSGDKEAQ---AEAALCERLIPHLDQNKPA 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGRV 294
+ N+ E +K LL+ KP++Y NVAE DLA NP V +V + + V
Sbjct: 179 NILETNEEEAKLLKLFQLLSAKPVLYACNVAEGDLATAEQNPFVQKVAAFVKEHHDAAYV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA++EAEL EL EE ++L LGV +SG+ +LIR+TY+LLGL+TYFT+GEKE +AWT
Sbjct: 239 PISARIEAELIELSPEEAKDFLKDLGVDDSGVSSLIRATYALLGLQTYFTAGEKEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIHSDFEKGFI+AE V+YDD V GS AAARE G R EGK+Y+ Q+G
Sbjct: 299 IRKGWKAPQAAGVIHSDFEKGFIKAEVVSYDDLVRLGSTAAAREAGKYRLEGKEYVFQDG 358
Query: 415 DVMLFRFN 422
DV LFRFN
Sbjct: 359 DVALFRFN 366
>gi|228961739|ref|ZP_04123342.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pakistani str. T13001]
gi|228797933|gb|EEM44943.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pakistani str. T13001]
Length = 369
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|423471640|ref|ZP_17448384.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-2]
gi|402431451|gb|EJV63519.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-2]
Length = 366
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFATNENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|167037215|ref|YP_001664793.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|167040645|ref|YP_001663630.1| GTP-dependent nucleic acid-binding protein EngD [Thermoanaerobacter
sp. X514]
gi|300914686|ref|ZP_07132002.1| GTP-binding protein YchF [Thermoanaerobacter sp. X561]
gi|307724080|ref|YP_003903831.1| GTP-binding protein YchF [Thermoanaerobacter sp. X513]
gi|320115634|ref|YP_004185793.1| GTP-binding protein YchF [Thermoanaerobacter brockii subsp. finnii
Ako-1]
gi|166854885|gb|ABY93294.1| GTP-binding protein YchF [Thermoanaerobacter sp. X514]
gi|166856049|gb|ABY94457.1| GTP-binding protein YchF [Thermoanaerobacter pseudethanolicus ATCC
33223]
gi|300889621|gb|EFK84767.1| GTP-binding protein YchF [Thermoanaerobacter sp. X561]
gi|307581141|gb|ADN54540.1| GTP-binding protein YchF [Thermoanaerobacter sp. X513]
gi|319928725|gb|ADV79410.1| GTP-binding protein YchF [Thermoanaerobacter brockii subsp. finnii
Ako-1]
Length = 363
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/367 (56%), Positives = 271/367 (73%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIVAVPD RL L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVAVPDKRLDFLAKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KVIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ +E+R++K K D ++ E LEKI++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVVERRLQKTSKLARNDKKAAF---ELEILEKIKKGLNEGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A S + I
Sbjct: 177 ALQFTEEEKSFVCQLMLLTSKPVMYVANISEEDLISGEENQYVKQLKEYAEKENSQVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y+D V AGS A ARE GL+R EGKDY++Q+GD+
Sbjct: 297 KGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQATAREMGLMRLEGKDYVMQDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|340357085|ref|ZP_08679713.1| GTP-dependent nucleic acid-binding protein EngD [Sporosarcina
newyorkensis 2681]
gi|339618763|gb|EGQ23354.1| GTP-dependent nucleic acid-binding protein EngD [Sporosarcina
newyorkensis 2681]
Length = 373
Score = 433 bits (1113), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 8 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVV 66
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D +I HV GKV
Sbjct: 67 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFVDENITHVAGKV 126
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D+++INLEL+ +D++ +EKR+ ++ K K KD + + E+ L K+++ +
Sbjct: 127 NPIDDIEIINLELILADMESVEKRLARVSKMAKQKDKAAMI---EEPILLKLKEGFENEL 183
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L D E +K + LLT+KP++YVANV+E ++AD +NP+V +V + A+ +
Sbjct: 184 AARSVDLTDDEYQVVKGMHLLTIKPMLYVANVSEDEIADADNNPYVQQVRDFAAKDNAEV 243
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ EL +E+ +L LG+ ESGL LI++TY+LLGL TYFT+G +E +AW
Sbjct: 244 IVVCAKIEEEMAELEDDEKEMFLEELGIKESGLDQLIKATYNLLGLATYFTAGVQEVRAW 303
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AGVIH+DFE+GFIRAETVAYDD V GS+AAA+E G +R EGK+YIV++
Sbjct: 304 TFRKGMKAPQCAGVIHTDFERGFIRAETVAYDDLVEHGSMAAAKEAGKVRLEGKEYIVKD 363
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 364 GDVMLFRFNV 373
>gi|374711020|ref|ZP_09715454.1| GTP-binding protein YchF [Sporolactobacillus inulinus CASD]
Length = 366
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ +
Sbjct: 1 MSLTTGIVGLPNVGKSTLFNAITQAG-AEMANYPFCTIEPNVGIVSVPDARLDRLTEMYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAGLVKGAS+GEGLGN+FL++IR+VD+I VVRCFED +I HV+GK+
Sbjct: 60 PKKTIPTTFEFTDIAGLVKGASKGEGLGNQFLANIRQVDAISHVVRCFEDKNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLELV +D++Q+ KR+++++K K KD S + E +AL+K+++A GK
Sbjct: 120 DPIDDIETINLELVLADMEQVTKRIDRVEKLAKQKDKASII---EFSALQKLKEAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V L D E ++K LT KP++YVANV+E D+A+ NPHV V A +
Sbjct: 177 PARHVELTDDEEAAVKPFNFLTKKPVLYVANVSEDDVAESDQNPHVQAVKAYARKDGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA++E+E+ EL EE+ +L LG+ SGL LI +Y LLGL TYFT+GEKE +AW
Sbjct: 237 VVISARIESEIAELDGEEKKVFLEELGLDASGLDRLIAKSYDLLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R G APQAAG+IHSDFE+GFIRAE V+YDD +AAGS AA+E G LR EGK+YI+Q+
Sbjct: 297 TFRKGTKAPQAAGIIHSDFERGFIRAEIVSYDDLIAAGSENAAKEMGRLRLEGKEYIMQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVNFRFNV 366
>gi|229082684|ref|ZP_04215138.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock4-2]
gi|229181721|ref|ZP_04309044.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
172560W]
gi|228601754|gb|EEK59252.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
172560W]
gi|228700629|gb|EEL53161.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock4-2]
Length = 369
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKVVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|423589292|ref|ZP_17565378.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD045]
gi|401224531|gb|EJR31085.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD045]
Length = 366
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A +GK
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAAY---EHEILVRLKEAFEEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 177 PARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV++
Sbjct: 297 TFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 357 GDVMHFRFNV 366
>gi|229118965|ref|ZP_04248310.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-3]
gi|407707943|ref|YP_006831528.1| 50S ribosomal protein L13 [Bacillus thuringiensis MC28]
gi|423376733|ref|ZP_17354017.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1O-2]
gi|423410291|ref|ZP_17387438.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-3]
gi|423439828|ref|ZP_17416734.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X2-1]
gi|423450011|ref|ZP_17426890.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5O-1]
gi|423462899|ref|ZP_17439667.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-1]
gi|423532256|ref|ZP_17508674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB2-9]
gi|423542474|ref|ZP_17518864.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB4-10]
gi|423548705|ref|ZP_17525063.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB5-5]
gi|423613619|ref|ZP_17589479.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD107]
gi|423618825|ref|ZP_17594658.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD115]
gi|423621488|ref|ZP_17597266.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD148]
gi|228664490|gb|EEL19986.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-3]
gi|401127309|gb|EJQ35036.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5O-1]
gi|401168721|gb|EJQ75980.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB4-10]
gi|401174822|gb|EJQ82029.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB5-5]
gi|401241684|gb|EJR48071.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD107]
gi|401252301|gb|EJR58562.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD115]
gi|401263243|gb|EJR69372.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD148]
gi|401640978|gb|EJS58703.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1O-2]
gi|401648288|gb|EJS65884.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-3]
gi|402421460|gb|EJV53713.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X2-1]
gi|402422708|gb|EJV54936.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6O-1]
gi|402465117|gb|EJV96801.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB2-9]
gi|407385628|gb|AFU16129.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis MC28]
Length = 366
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|304440382|ref|ZP_07400271.1| GTP-binding protein YchF [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371134|gb|EFM24751.1| GTP-binding protein YchF [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 364
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/368 (58%), Positives = 284/368 (77%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+VAVPD RL VLS ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AEAANYPFATIEPNIGVVAVPDERLEVLSKINNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA++EF DIAGLVKGAS+GEGLGN+FL++IREVDSI+QVVRCFED++I+HV+G V+P
Sbjct: 60 RILPATIEFFDIAGLVKGASKGEGLGNQFLANIREVDSIVQVVRCFEDSNIIHVDGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDLD ++KR+ +++K D L E L+K ++ L GK AR
Sbjct: 120 LRDIENINLELIFSDLDLVDKRLSRVEKQAKADKSLAL---EVEVLKKTKEVLEQGKAAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
S+ L++ E +K LL+ KPIIYVANV+E D+AD G SN V+EV A+ S V
Sbjct: 177 SLDLSEEESKILKSYQLLSSKPIIYVANVSEDDIADDGASNKMVSEVREYAAKEGSDVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
IS ++E+++ L +E+ +L LG+ SGL LIR++YSLLGL +Y TSG ET+AWTI
Sbjct: 237 ISCEIESQIQALDDDEKELFLEELGLKSSGLDKLIRASYSLLGLISYLTSGPMETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFE+GFIRAETV+YDD V +GS+ AA+E GL+RSEGKDY+VQ+GD
Sbjct: 297 KKGTKAPQAAGKIHTDFERGFIRAETVSYDDLVKSGSMNAAKEHGLVRSEGKDYVVQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VILFRFNV 364
>gi|194016267|ref|ZP_03054881.1| GTP-binding protein YchF [Bacillus pumilus ATCC 7061]
gi|194011740|gb|EDW21308.1| GTP-binding protein YchF [Bacillus pumilus ATCC 7061]
Length = 366
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K+ A GK
Sbjct: 120 DPVSDIETINLELILADLETVEKRLARVSKLAKQKDKEAV---AEFDILSKLMNAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV D ++ +KQL LLT KP++YVANV+E ++AD N +V ++ AS +
Sbjct: 177 SARSVEFTDEQQKLVKQLHLLTSKPVLYVANVSEDEVADHDGNEYVQQIREFASSENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIQASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G +R EGK+Y+V++
Sbjct: 297 TFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKVRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|228905419|ref|ZP_04069374.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 4222]
gi|228854239|gb|EEM98942.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 4222]
Length = 369
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 278/372 (74%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAENENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|229072940|ref|ZP_04206136.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
F65185]
gi|365162565|ref|ZP_09358693.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
7_6_55CFAA_CT2]
gi|423410782|ref|ZP_17387902.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3O-2]
gi|423433433|ref|ZP_17410437.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4O-1]
gi|423438873|ref|ZP_17415854.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X12-1]
gi|228710186|gb|EEL62164.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
F65185]
gi|363618098|gb|EHL69454.1| GTP-dependent nucleic acid-binding protein engD [Bacillus sp.
7_6_55CFAA_CT2]
gi|401109514|gb|EJQ17437.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3O-2]
gi|401111851|gb|EJQ19733.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4O-1]
gi|401116000|gb|EJQ23846.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG4X12-1]
Length = 366
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKVVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|30023499|ref|NP_835130.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
ATCC 14579]
gi|218234290|ref|YP_002370250.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
B4264]
gi|229051144|ref|ZP_04194688.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH676]
gi|229112888|ref|ZP_04242419.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-15]
gi|229130721|ref|ZP_04259674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-Cer4]
gi|229148025|ref|ZP_04276364.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST24]
gi|229153634|ref|ZP_04281810.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1550]
gi|296505903|ref|YP_003667603.1| translation-associated GTPase [Bacillus thuringiensis BMB171]
gi|423632790|ref|ZP_17608535.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD154]
gi|423644632|ref|ZP_17620249.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD166]
gi|423651313|ref|ZP_17626883.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD169]
gi|423658387|ref|ZP_17633686.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD200]
gi|29899060|gb|AAP12331.1| GTP-binding protein [Bacillus cereus ATCC 14579]
gi|218162247|gb|ACK62239.1| GTP-binding protein YchF [Bacillus cereus B4264]
gi|228629820|gb|EEK86473.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1550]
gi|228635450|gb|EEK91941.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST24]
gi|228652738|gb|EEL08623.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-Cer4]
gi|228670567|gb|EEL25880.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock1-15]
gi|228722207|gb|EEL73608.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH676]
gi|296326955|gb|ADH09883.1| translation-associated GTPase [Bacillus thuringiensis BMB171]
gi|401259436|gb|EJR65612.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD154]
gi|401270264|gb|EJR76287.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD166]
gi|401279365|gb|EJR85294.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD169]
gi|401288117|gb|EJR93879.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD200]
Length = 366
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|333896882|ref|YP_004470756.1| GTP-binding protein YchF [Thermoanaerobacterium xylanolyticum
LX-11]
gi|333112147|gb|AEF17084.1| GTP-binding protein YchF [Thermoanaerobacterium xylanolyticum
LX-11]
Length = 363
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 273/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDKRLNELANIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCF+D++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFDDSNITHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I LEL+ +DL+ +EKR+ K K D + E LEKI++ L DGKP R
Sbjct: 120 IRDIEIITLELILADLEVVEKRIAKTSKYAKNDKTAAF---ELNVLEKIKKTLDDGKPIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ +D E + QL LLT KP++Y AN++E DL N +V ++ + A + +S + I
Sbjct: 177 TMDFDDEELSFVNQLMLLTSKPVMYAANISEDDLISKSENEYVKKLKDFAKNEKSDVIVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI+
Sbjct: 237 SAKIEEELSSLPDEEKYELLSEYGLEEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y D+V +G A+EKGL+R EGKDY+V++GD+
Sbjct: 297 RGTKAPQAAGKIHSDFEKGFIRAEVISYKDYVESGGETPAKEKGLMRLEGKDYVVEDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 IVFRFNV 363
>gi|326390533|ref|ZP_08212089.1| GTP-binding protein YchF [Thermoanaerobacter ethanolicus JW 200]
gi|325993358|gb|EGD51794.1| GTP-binding protein YchF [Thermoanaerobacter ethanolicus JW 200]
Length = 364
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/368 (57%), Positives = 273/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ IE+R++K K D ++ E LEKI++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF---EVEVLEKIKKGLDEGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A + S + I
Sbjct: 177 ALQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAENENSQVLVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 237 SAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD- 415
G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+R EGKDY++Q+GD
Sbjct: 297 KGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLMRLEGKDYVMQDGDI 356
Query: 416 VMLFRFNV 423
V++FRFNV
Sbjct: 357 VVVFRFNV 364
>gi|218900616|ref|YP_002449027.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
G9842]
gi|228911314|ref|ZP_04075118.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 200]
gi|228968627|ref|ZP_04129610.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar sotto str. T04001]
gi|402562916|ref|YP_006605640.1| GTP-binding protein YchF [Bacillus thuringiensis HD-771]
gi|423362682|ref|ZP_17340182.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD022]
gi|423565634|ref|ZP_17541909.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A1]
gi|434378635|ref|YP_006613279.1| GTP-binding protein YchF [Bacillus thuringiensis HD-789]
gi|218542496|gb|ACK94890.1| GTP-binding protein YchF [Bacillus cereus G9842]
gi|228791056|gb|EEM38674.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar sotto str. T04001]
gi|228848332|gb|EEM93182.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis IBL 200]
gi|401076956|gb|EJP85301.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD022]
gi|401193316|gb|EJR00322.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A1]
gi|401791568|gb|AFQ17607.1| GTP-binding protein YchF [Bacillus thuringiensis HD-771]
gi|401877192|gb|AFQ29359.1| GTP-binding protein YchF [Bacillus thuringiensis HD-789]
Length = 366
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAENENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|407979899|ref|ZP_11160703.1| GTP-binding protein YchF [Bacillus sp. HYC-10]
gi|407413392|gb|EKF35102.1| GTP-binding protein YchF [Bacillus sp. HYC-10]
Length = 366
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K++ A GK
Sbjct: 120 DPVSDIETINLELILADLETVEKRLTRVSKLAKQKDKEAV---AEFEILTKLKDAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV D ++ +KQL LLT KPI+YVANV+E ++AD N +V ++ AS +
Sbjct: 177 SARSVEFTDEQQKLVKQLHLLTSKPILYVANVSEDEVADQDGNEYVQQIREFASGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G +R EGK+Y V++
Sbjct: 297 TFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKVRLEGKEYEVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|95930453|ref|ZP_01313189.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
gi|95133493|gb|EAT15156.1| conserved hypothetical protein [Desulfuromonas acetoxidans DSM 684]
Length = 364
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 280/370 (75%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ G A++AN+PFCTIEPNVGIVAVPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIEPNVGIVAVPDKRLDALAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL HIR+VD+I ++RCFED+++VHV+G V
Sbjct: 60 PQRVLPTTMEFVDIAGLVKGASKGEGLGNQFLGHIRQVDAIANIIRCFEDDNVVHVDGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+DVI EL +DL+ +EKR +++K K+ D S+ AE ALE ++Q L DG+
Sbjct: 120 DPLRDIDVIQTELNLADLESVEKRKTRIQKLAKSGDKASQ---AELVALEALEQCLNDGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR L+D +R ++ L L+T+KP++YVANVAE DLA G +PHV +V + A++ +
Sbjct: 177 PARVAALSDEQRAMVQDLHLITIKPVLYVANVAEDDLA--GEHPHVQKVRDYAAEQGAEV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I ++E+E+ EL EE+ ++L +G+ +SGL +I++ Y LLGL TYFT+G KE +AW
Sbjct: 235 VIICGKIESEIAELDPEEKSDFLQEMGLDQSGLDQMIQAGYRLLGLITYFTAGVKEVRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+ APQAAGVIH+DFEKGFIRAE +AYDDF+AA A A+EKGLLR EGK+Y+V++
Sbjct: 295 TVPENALAPQAAGVIHTDFEKGFIRAEVIAYDDFIAAKGEAGAKEKGLLRVEGKEYLVKD 354
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 355 GDVMHFRFNV 364
>gi|229087962|ref|ZP_04220070.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-44]
gi|228695347|gb|EEL48224.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-44]
Length = 366
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V D + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTDEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVKMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYNDLMENGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|206970397|ref|ZP_03231350.1| GTP-binding protein YchF [Bacillus cereus AH1134]
gi|228955726|ref|ZP_04117721.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|229193726|ref|ZP_04320667.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 10876]
gi|423427561|ref|ZP_17404592.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-2]
gi|423506636|ref|ZP_17483225.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HD73]
gi|449092549|ref|YP_007424990.1| GTP-binding protein YchF [Bacillus thuringiensis serovar kurstaki
str. HD73]
gi|206734974|gb|EDZ52143.1| GTP-binding protein YchF [Bacillus cereus AH1134]
gi|228589751|gb|EEK47629.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 10876]
gi|228803954|gb|EEM50578.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar kurstaki str. T03a001]
gi|401108900|gb|EJQ16830.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-2]
gi|402447301|gb|EJV79157.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HD73]
gi|449026306|gb|AGE81469.1| GTP-binding protein YchF [Bacillus thuringiensis serovar kurstaki
str. HD73]
Length = 366
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|229159035|ref|ZP_04287091.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 4342]
gi|228624454|gb|EEK81225.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ATCC 4342]
Length = 366
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 279/371 (75%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+AAA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMAAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|228942624|ref|ZP_04105156.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|228975554|ref|ZP_04136106.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228982190|ref|ZP_04142479.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis Bt407]
gi|384189564|ref|YP_005575460.1| translation-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|410677889|ref|YP_006930260.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis Bt407]
gi|423386957|ref|ZP_17364212.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-2]
gi|423526711|ref|ZP_17503156.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB1-1]
gi|452201985|ref|YP_007482066.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
gi|228777542|gb|EEM25820.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis Bt407]
gi|228784164|gb|EEM32191.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar thuringiensis str. T01001]
gi|228817050|gb|EEM63143.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar berliner ATCC 10792]
gi|326943273|gb|AEA19169.1| translation-associated GTPase [Bacillus thuringiensis serovar
chinensis CT-43]
gi|401630809|gb|EJS48607.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-2]
gi|402454583|gb|EJV86373.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuB1-1]
gi|409177018|gb|AFV21323.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis Bt407]
gi|452107378|gb|AGG04318.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus
thuringiensis serovar thuringiensis str. IS5056]
Length = 366
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A + S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAENENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|373106709|ref|ZP_09521009.1| GTP-binding protein YchF [Stomatobaculum longum]
gi|371651648|gb|EHO17074.1| GTP-binding protein YchF [Stomatobaculum longum]
Length = 365
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 275/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G AQAAN+PFCTI+PNVG+VAVPD R+ L + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AQAANYPFCTIDPNVGVVAVPDARIKTLGEMHHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVRGASKGEGLGNQFLANIRECDAIVHVVRCFEDENVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+F+DL+ +E+R+ K +K D K E L++++ L DGKPA
Sbjct: 120 VRDIETINLELIFADLEVLERRIAKTQKSANNDKSLK---KELEILKELKVLLEDGKPAS 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
+ +D + + + LCLLT KP+IY ANV E DLAD G SNPHV V A+ QS
Sbjct: 177 AFETDDADVAAFVASLCLLTAKPVIYAANVKEDDLADDGASNPHVTAVRAYAAAHQSKVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SAQ+E E+ L E+ +YL +LG+S SGL LI ++Y LLGL ++ T+GE ET+AWT
Sbjct: 237 CVSAQIEEEIAALDESEKADYLEALGISVSGLDKLIAASYELLGLISFLTTGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFIRAE + YDDFV GS AAA+EKGL+R EGKDY+VQ+G
Sbjct: 297 IKKGSKAPQAAGKIHTDFERGFIRAEVIGYDDFVRCGSSAAAKEKGLMRLEGKDYVVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|357058034|ref|ZP_09118891.1| GTP-binding protein YchF [Selenomonas infelix ATCC 43532]
gi|355374611|gb|EHG21905.1| GTP-binding protein YchF [Selenomonas infelix ATCC 43532]
Length = 368
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 273/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTELYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKRM K+ K S SK AE ALE ++ AL +GKPA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRMAKVT--KLLKSGSKDAKAEHTALECLKSALDEGKPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L D E+ ++ L LLT KPI+Y+ANV E + A NPHV V A+ + V
Sbjct: 180 REVELTDEEQAMLRDLNLLTRKPILYIANVGEDEAATADAENPHVQTVKEYAARTGAQVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+SESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDAEEAAVFLEDLGLSESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGL+R EGK+Y++++G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLVRLEGKEYVMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|51894084|ref|YP_076775.1| GTP-dependent nucleic acid-binding protein EngD [Symbiobacterium
thermophilum IAM 14863]
gi|51857773|dbj|BAD41931.1| highly conserved GTP-binding protein [Symbiobacterium thermophilum
IAM 14863]
Length = 367
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/372 (57%), Positives = 280/372 (75%), Gaps = 8/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA+ G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIEPNVGVVDVPDARLPVLAKMFN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + VP S++F+DIAG+VKGAS+GEGLGNKFL HIREVD+I VVRCFED ++ HV+G+V
Sbjct: 60 SARIVPTSIKFIDIAGIVKGASKGEGLGNKFLHHIREVDAIAHVVRCFEDPNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP SD++VINLEL+ +DL+ IE+R E+ AK +++ +K+A E L ++++AL G
Sbjct: 120 DPLSDIEVINLELILADLETIERRYER----SAKAAKAGVKEAQVEHGLLSRLKEALEAG 175
Query: 233 KPARSVTLN-DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
PARSV + D E ++ L L+T KP++Y+ANVAE +A+P + P+V +V LA S
Sbjct: 176 LPARSVAIEGDEEARVLRDLHLITAKPVMYIANVAEEHVANPFAVPYVAQVKELADREGS 235
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E+EL E+ EER +LA LG++ESGL +IR Y LL L ++ T+GE E +
Sbjct: 236 EVVPISARIESELAEMDDEERAAFLADLGLAESGLDRVIRHGYHLLNLISFLTAGETEAR 295
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTIR G APQAAGVIHSD E+GFIRAE V+YDD V AGS+AAARE G +R EGKDY++
Sbjct: 296 AWTIRRGTKAPQAAGVIHSDMERGFIRAEVVSYDDLVTAGSMAAAREAGKVRLEGKDYVM 355
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 356 QDGDVVTFRFNV 367
>gi|403068947|ref|ZP_10910279.1| GTP-binding protein YchF [Oceanobacillus sp. Ndiop]
Length = 366
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 282/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFVDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+++INLEL+ +DL+ + KR +EKL + K KD+ AE L KI+ L +
Sbjct: 120 DPIDDIEIINLELILADLETVNKRFQRVEKLARQKDKDAV-----AEHDVLVKIKDGLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R++ + ++ ++ L LLT KP +YVANV+E ++ADP SN +V +V A+ +
Sbjct: 175 EKPVRALEFTEDQQKVVRGLHLLTSKPTLYVANVSEEEVADPDSNENVQKVREFAAKENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E++EL EE+ +L LG++ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVICARIEEEISELDPEEKEMFLDDLGITESGLDKLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R G+ APQAAG+IH+DFE+GFIRAETV+Y+D V AG++A ARE+G +R EGKDY+V
Sbjct: 295 AWTFRKGIKAPQAAGIIHTDFERGFIRAETVSYEDLVDAGNMAHARERGKVRLEGKDYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVIHFRFNV 366
>gi|423394326|ref|ZP_17371527.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-1]
gi|401658697|gb|EJS76187.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-1]
Length = 366
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL +E+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEDEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|229000264|ref|ZP_04159833.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock3-17]
gi|229007788|ref|ZP_04165374.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock1-4]
gi|228753465|gb|EEM02917.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock1-4]
gi|228759596|gb|EEM08573.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
Rock3-17]
Length = 369
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 278/372 (74%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEA 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKKGMKAPQCAGVIHTDFERGFIRAETVSYDDLMENGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|363898938|ref|ZP_09325450.1| GTP-binding protein YchF [Oribacterium sp. ACB1]
gi|395209425|ref|ZP_10398519.1| GTP-binding protein YchF [Oribacterium sp. ACB8]
gi|361959554|gb|EHL12834.1| GTP-binding protein YchF [Oribacterium sp. ACB1]
gi|394705056|gb|EJF12585.1| GTP-binding protein YchF [Oribacterium sp. ACB8]
Length = 364
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/368 (57%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I LEL+FSDL+ +++RM+K KK D +K E A LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMQKTKKLANNDKDAK---KEYALLEKLHTHLEEGKLAI 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
+ + + + + L LLT KP+IY NVAE LAD G SN +V +V A S
Sbjct: 177 NFEAEEDDAELLDSLGLLTRKPVIYACNVAEESLADDGASNLYVQKVREYAKKNHSESFV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWTI
Sbjct: 237 ISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGL+R EGK+Y++Q+GD
Sbjct: 297 KKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLVRMEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|323450780|gb|EGB06660.1| hypothetical protein AURANDRAFT_54165 [Aureococcus anophagefferens]
Length = 398
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 221/385 (57%), Positives = 282/385 (73%), Gaps = 9/385 (2%)
Query: 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV 101
S+R F I+M L+ GIVGLPNVGKSTLFNA+ E+ A+AAN+PFCTIEPNVG+V+V
Sbjct: 20 SARPSFRRGRTITMGLKTGIVGLPNVGKSTLFNALTEDVNAEAANYPFCTIEPNVGVVSV 79
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161
PD RL LS + S+K V S+EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I+ VVRC
Sbjct: 80 PDARLAALSDIHDSEKTVATSLEFVDIAGLVKGASKGEGLGNQFLANIRECDAIVHVVRC 139
Query: 162 FEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS-KLKDAEKA 220
F+D +++HV+G +DP DVDVI LEL SDL Q+EKR E+ KD+++ K E
Sbjct: 140 FDDENVIHVDGSIDPLRDVDVIELELALSDLAQVEKRRER----AGKDAKTGKAPPCEIP 195
Query: 221 ALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVN 280
AL+K+ AL +G AR V L D E +++K L LLT+KP+IY NVA+ DLA+ N V
Sbjct: 196 ALDKLAAALDEGTQARDVALEDKELEAVKGLNLLTIKPVIYACNVADDDLAE--GNAMVE 253
Query: 281 EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVS--ESGLGNLIRSTYSLLG 338
+V A++ V +SAQVE+EL L +E+R E+L +LGVS GL L+RS Y LG
Sbjct: 254 KVRAKAAETGETVVVVSAQVESELVTLEAEDRDEFLDALGVSLEACGLRALVRSAYDALG 313
Query: 339 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAARE 398
L TY+TSG ET+AWTI G APQAAGVIH DFE+GFI+AETVAYD VAAG A+E
Sbjct: 314 LITYYTSGPTETRAWTIVDGWRAPQAAGVIHGDFERGFIKAETVAYDALVAAGDEKVAKE 373
Query: 399 KGLLRSEGKDYIVQEGDVMLFRFNV 423
+GL+R+EGK+Y+V++GDVMLFRFNV
Sbjct: 374 QGLVRAEGKEYVVKDGDVMLFRFNV 398
>gi|118480503|ref|YP_897654.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis str. Al Hakam]
gi|228936755|ref|ZP_04099546.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
gi|228988703|ref|ZP_04148788.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|229124978|ref|ZP_04254152.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
95/8201]
gi|229187704|ref|ZP_04314840.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BGSC 6E1]
gi|118419728|gb|ABK88147.1| GTP-binding protein [Bacillus thuringiensis str. Al Hakam]
gi|228595772|gb|EEK53456.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BGSC 6E1]
gi|228658479|gb|EEL14145.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
95/8201]
gi|228771015|gb|EEM19496.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar tochigiensis BGSC 4Y1]
gi|228822964|gb|EEM68805.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar andalousiensis BGSC 4AW1]
Length = 369
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|157694463|ref|YP_001488925.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus pumilus
SAFR-032]
gi|157683221|gb|ABV64365.1| GTP-binding protein [Bacillus pumilus SAFR-032]
Length = 366
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ +EKR+ ++ K K KD ++ AE L K+ A GK
Sbjct: 120 DPVSDIETINLELILADLETVEKRLARVSKLAKQKDKEAV---AEFDILSKLMHAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV + ++ +KQL LLT KP++YVANV+E ++AD N +V ++ AS +
Sbjct: 177 SARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADHDGNEYVQQIREFASGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIKESGLDQLIQASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IH+DFE+GFIRAETVAY+D +A GS++AA+E G +R EGK+Y+V++
Sbjct: 297 TFKKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGSMSAAKEAGKVRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|228994194|ref|ZP_04154094.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
pseudomycoides DSM 12442]
gi|228765646|gb|EEM14300.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
pseudomycoides DSM 12442]
Length = 366
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEAG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENEYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKKGMKAPQCAGVIHTDFERGFIRAETVSYDDLMENGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|443631584|ref|ZP_21115765.1| GTPase with RNA binding site [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
gi|443349389|gb|ELS63445.1| GTPase with RNA binding site [Bacillus subtilis subsp. inaquosorum
KCTC 13429]
Length = 366
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 281/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A +
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 175 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 295 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|430756770|ref|YP_007207422.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. BSP1]
gi|430021290|gb|AGA21896.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. BSP1]
Length = 366
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFES 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV L + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 175 EKPARSVELTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 295 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVIHFRFNV 366
>gi|402574963|ref|YP_006624306.1| GTP-binding protein YchF [Desulfosporosinus meridiei DSM 13257]
gi|402256160|gb|AFQ46435.1| GTP-binding protein YchF [Desulfosporosinus meridiei DSM 13257]
Length = 366
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/372 (57%), Positives = 278/372 (74%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDSRLQKLAEMVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
+PK D++ I+LEL+ SD++ IEKR + KL K K +QS++ A LE++++
Sbjct: 120 NPKRDIETIDLELILSDMESIEKRSDRTSKLLKTGDKKAQSEI-----ALLERLKEVFNQ 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK ARS+T D ER+ +K LLT+KP++YVANV+ES LA NP+V +V +A++ +
Sbjct: 175 GKGARSLTFTDDEREILKGFPLLTLKPVLYVANVSESGLATADDNPYVQQVREIAAEEGA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + AQ+EAE+ EL ++E+ +L LG+ ESGL LIR + LLGL T+FT+G E K
Sbjct: 235 EVVVVCAQIEAEIAELEADEKAAFLEDLGLEESGLDRLIRVAFHLLGLMTFFTAGPIEVK 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP+AAGVIH+DFE GFIRAE V+Y DFV L AR+KGL+R EGK+YI+
Sbjct: 295 AWTIYQGTKAPKAAGVIHTDFEHGFIRAEVVSYKDFVEFNGLNGARDKGLVRLEGKEYIM 354
Query: 412 QEGDVMLFRFNV 423
+GD++ FRFNV
Sbjct: 355 NDGDIVHFRFNV 366
>gi|323141492|ref|ZP_08076381.1| GTP-binding protein YchF [Phascolarctobacterium succinatutens YIT
12067]
gi|322414072|gb|EFY04902.1| GTP-binding protein YchF [Phascolarctobacterium succinatutens YIT
12067]
Length = 368
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/372 (58%), Positives = 283/372 (76%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VLS +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDKRLDVLSDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
KS+K VPA++ FVDIAGLVKGAS+GEGLGNKFLSHIREVD++ +VVRCFED +I HV G
Sbjct: 60 FKSKKIVPAAMRFVDIAGLVKGASKGEGLGNKFLSHIREVDAVAEVVRCFEDGNITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+D+IN EL +D++ +EKR E+L K K D + KL E+A +EK+ L D
Sbjct: 120 SIDPLRDIDIINTELCLADMETVEKRQERLVKLAKTGDKKVKL---EQAVMEKVMAGLSD 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G PAR + L + E++ + +L LLTMKP++Y+ NVAE ++ADP N HV V A++ +
Sbjct: 177 GVPARRLGLTEEEQELLGELHLLTMKPVLYITNVAEGEVADPSGNEHVQAVKKYAAEENA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA++E+E+ ELP EE EYL G+ E+GL LI++ + LLGL T+ T+GE E++
Sbjct: 237 EVIVVSAKMESEVAELPEEEAKEYLEMAGLEETGLDRLIKAGFKLLGLMTFLTAGEMESR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI+ APQAAG IH+DFE+GFIRAE V++DD VA GS AAAREKGL+R EGKDY++
Sbjct: 297 AWTIKLNTKAPQAAGKIHTDFERGFIRAEIVSFDDLVACGSKAAAREKGLVRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 357 QDGDVVEFRFNV 368
>gi|433655395|ref|YP_007299103.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433293584|gb|AGB19406.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 363
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 272/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDNRLYELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNITHVEGNIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I LELV +DL+ IEKR+ K K D + E LEKI+ L DGKP R
Sbjct: 120 IRDIEIITLELVLADLEVIEKRIAKTSKYAKNDKSAAF---ELNILEKIKNTLDDGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ ++ E + QL LLT KP++Y AN++E DL N +V ++ A +S + I
Sbjct: 177 TMNFDEDELPFVNQLMLLTSKPVMYAANISEDDLISGKENDYVKKLKEYAEKEKSEVIVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI+
Sbjct: 237 SAKIEEELSSLPDEEKYELLSEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+DFEKGFIRAE ++Y+D++ AG +A+EKGL+R EGKDY+V++GD+
Sbjct: 297 KGTKAPQAAGKIHTDFEKGFIRAEVISYNDYIEAGGETSAKEKGLMRLEGKDYVVEDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|390934657|ref|YP_006392162.1| GTP-binding protein YchF [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
gi|389570158|gb|AFK86563.1| GTP-binding protein YchF [Thermoanaerobacterium saccharolyticum
JW/SL-YS485]
Length = 363
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 272/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDKRLNELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCF+D++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFDDSNITHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I LEL+ +DL+ +EKR+ K K D + E LE+I++ L DGKP R
Sbjct: 120 IRDIEIITLELILADLEVVEKRIAKTSKYAKNDKTAAF---ELNVLERIKKTLDDGKPIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ +D E + QL LLT KP++Y AN++E DL N +V ++ A + +S + I
Sbjct: 177 TMDFDDEELSFVNQLMLLTSKPVMYAANISEDDLISKNENEYVKKLKEFAKNEKSDVIVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI+
Sbjct: 237 SAKIEEELSSLPDEEKYELLSEYGLEEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y D+V +G A+EKGL+R EGKDY+V++GD+
Sbjct: 297 QGTKAPQAAGKIHSDFEKGFIRAEVISYKDYVESGGETPAKEKGLMRLEGKDYVVEDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 IVFRFNV 363
>gi|374997995|ref|YP_004973494.1| GTP-binding protein YchF [Desulfosporosinus orientis DSM 765]
gi|357216361|gb|AET70979.1| GTP-binding protein YchF [Desulfosporosinus orientis DSM 765]
Length = 366
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVEVPDSRLQVLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGASQGEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASQGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
+PK D++ I+LEL+ +D++ IEKR ++ K KA D +++ E LE++++A GK
Sbjct: 120 NPKRDIETIDLELILADMESIEKRSDRTSKLLKAGDKKAQ---TEITLLERLKEAFNQGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR++T +D ERD +K LLT+KP++YVANV+ES L N +V +V +A +
Sbjct: 177 RARTLTFSDEERDILKGFPLLTLKPVLYVANVSESGLESVADNSYVQQVKEIADAEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + AQ+EAE+ EL +EE+ +L LG+ ESGL LI+ + LLGL T+FT+G E KAW
Sbjct: 237 VVVCAQIEAEIAELDAEEKNAFLEDLGLEESGLDRLIKVAFHLLGLMTFFTAGPMEVKAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AAGVIH+DFE GFIRAE VAY DFV L A+EKGL+R EGK+YI+ +
Sbjct: 297 TIYQGTKAPKAAGVIHTDFEHGFIRAEVVAYKDFVEHQGLNGAKEKGLVRLEGKEYIMND 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVHFRFNV 366
>gi|238926218|ref|ZP_04657978.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|304436740|ref|ZP_07396708.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|238885898|gb|EEQ49536.1| GTP-binding protein [Selenomonas flueggei ATCC 43531]
gi|304370220|gb|EFM23877.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 368
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 276/369 (74%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G +D
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGGID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKR+ K+ K S SK AE AALE++++AL G+PA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRLVKVTK--LLKSGSKEAKAEHAALERLKEALDAGRPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L++ E+ ++ L LLT KPI+Y+ANV E + A NPHV +V A+ + V
Sbjct: 180 REVELSEEEQGILRDLNLLTRKPILYIANVGEDEAATADAENPHVQKVKEYAARTGAQVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL EE +L LG++ESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDDEEAAAFLEDLGLAESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGL+R EGKDY++++G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLVRLEGKDYVMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|442804530|ref|YP_007372679.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
gi|442740380|gb|AGC68069.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
stercorarium subsp. stercorarium DSM 8532]
Length = 364
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 281/367 (76%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTI+PN+G+V VPD RL L+ + K +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIDPNIGVVNVPDERLDKLAEMYKPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED +IVHV+G + P
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDPNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+F+DL+ +E+RM+K+KK +AK + K ++ E LE I+Q L +P R
Sbjct: 120 VRDIETINLELIFADLEVLERRMDKVKK-QAKSGEKKYQE-ELEFLESIKQHLESNQPVR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ +++ +QL LLT KP++Y AN++E D+ +P +NP+V E+ A+ ++ +TI
Sbjct: 178 TMKIDEEWEKYAEQLFLLTAKPMLYCANISEDDIKNPDANPYVRELKAYAAKEKAEVITI 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E E+ +L E+ +L+ LG+ ESGL LI+++Y LLGL ++ T+GE E +AWTI+
Sbjct: 238 CARIEEEIAQLDDSEKKAFLSELGIGESGLDRLIKASYKLLGLISFLTAGETEVRAWTIK 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAE VAY+D + AGS AA+E GL+RSEGKDY++Q+GDV
Sbjct: 298 KGTKAPQAAGKIHSDFERGFIRAEVVAYEDLIKAGSYTAAKEMGLVRSEGKDYVMQDGDV 357
Query: 417 MLFRFNV 423
LFRFNV
Sbjct: 358 TLFRFNV 364
>gi|30265493|ref|NP_847870.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Ames]
gi|47531061|ref|YP_022410.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. 'Ames Ancestor']
gi|49188312|ref|YP_031565.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Sterne]
gi|49480471|ref|YP_039465.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
thuringiensis serovar konkukian str. 97-27]
gi|52145283|ref|YP_086740.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
E33L]
gi|165873025|ref|ZP_02217646.1| GTP-binding protein YchF [Bacillus anthracis str. A0488]
gi|167635080|ref|ZP_02393397.1| GTP-binding protein YchF [Bacillus anthracis str. A0442]
gi|170689478|ref|ZP_02880668.1| GTP-binding protein YchF [Bacillus anthracis str. A0465]
gi|170707556|ref|ZP_02898009.1| GTP-binding protein YchF [Bacillus anthracis str. A0389]
gi|190569303|ref|ZP_03022197.1| GTP-binding protein YchF [Bacillus anthracis str. Tsiankovskii-I]
gi|196041950|ref|ZP_03109237.1| GTP-binding protein YchF [Bacillus cereus NVH0597-99]
gi|196045504|ref|ZP_03112735.1| GTP-binding protein YchF [Bacillus cereus 03BB108]
gi|206975804|ref|ZP_03236715.1| GTP-binding protein YchF [Bacillus cereus H3081.97]
gi|217962968|ref|YP_002341546.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
AH187]
gi|218906667|ref|YP_002454501.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
AH820]
gi|222098952|ref|YP_002533010.1| gtp-dependent nucleic acid-binding protein engd [Bacillus cereus
Q1]
gi|225867456|ref|YP_002752834.1| GTP-binding protein YchF [Bacillus cereus 03BB102]
gi|227818244|ref|YP_002818253.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. CDC 684]
gi|228918087|ref|ZP_04081615.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|228930481|ref|ZP_04093481.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228949197|ref|ZP_04111465.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|229094586|ref|ZP_04225653.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-42]
gi|229142224|ref|ZP_04270748.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST26]
gi|229199605|ref|ZP_04326265.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1293]
gi|229601860|ref|YP_002869684.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. A0248]
gi|254687084|ref|ZP_05150942.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. CNEVA-9066]
gi|254724133|ref|ZP_05185918.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. A1055]
gi|254742141|ref|ZP_05199828.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Kruger B]
gi|254755949|ref|ZP_05207981.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Vollum]
gi|254761371|ref|ZP_05213393.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Australia 94]
gi|300118823|ref|ZP_07056543.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
SJ1]
gi|375287496|ref|YP_005107935.1| GTP-binding protein YchF [Bacillus cereus NC7401]
gi|376269391|ref|YP_005122103.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus cereus
F837/76]
gi|384183342|ref|YP_005569104.1| GTP-binding protein YchF [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|386739339|ref|YP_006212520.1| GTP-binding protein [Bacillus anthracis str. H9401]
gi|402554421|ref|YP_006595692.1| GTP-binding protein YchF [Bacillus cereus FRI-35]
gi|421508125|ref|ZP_15955041.1| GTP-binding protein YchF [Bacillus anthracis str. UR-1]
gi|421640472|ref|ZP_16081055.1| GTP-binding protein YchF [Bacillus anthracis str. BF1]
gi|423355958|ref|ZP_17333582.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
IS075]
gi|423374955|ref|ZP_17352292.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AND1407]
gi|423554074|ref|ZP_17530400.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ISP3191]
gi|423571367|ref|ZP_17547610.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A12]
gi|423572865|ref|ZP_17548984.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-D12]
gi|423608183|ref|ZP_17584075.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD102]
gi|30260171|gb|AAP29356.1| GTP-binding protein YchF [Bacillus anthracis str. Ames]
gi|47506209|gb|AAT34885.1| GTP-binding protein YchF [Bacillus anthracis str. 'Ames Ancestor']
gi|49182239|gb|AAT57615.1| GTP-binding protein YchF [Bacillus anthracis str. Sterne]
gi|49332027|gb|AAT62673.1| conserved GTP-binding protein [Bacillus thuringiensis serovar
konkukian str. 97-27]
gi|51978752|gb|AAU20302.1| conserved GTP-binding protein [Bacillus cereus E33L]
gi|164711237|gb|EDR16793.1| GTP-binding protein YchF [Bacillus anthracis str. A0488]
gi|167529554|gb|EDR92304.1| GTP-binding protein YchF [Bacillus anthracis str. A0442]
gi|170127552|gb|EDS96426.1| GTP-binding protein YchF [Bacillus anthracis str. A0389]
gi|170666580|gb|EDT17353.1| GTP-binding protein YchF [Bacillus anthracis str. A0465]
gi|190559610|gb|EDV13601.1| GTP-binding protein YchF [Bacillus anthracis str. Tsiankovskii-I]
gi|196023711|gb|EDX62387.1| GTP-binding protein YchF [Bacillus cereus 03BB108]
gi|196027205|gb|EDX65825.1| GTP-binding protein YchF [Bacillus cereus NVH0597-99]
gi|206745898|gb|EDZ57294.1| GTP-binding protein YchF [Bacillus cereus H3081.97]
gi|217064503|gb|ACJ78753.1| GTP-binding protein YchF [Bacillus cereus AH187]
gi|218538267|gb|ACK90665.1| GTP-binding protein YchF [Bacillus cereus AH820]
gi|221243011|gb|ACM15721.1| conserved GTP-binding protein [Bacillus cereus Q1]
gi|225790039|gb|ACO30256.1| GTP-binding protein YchF [Bacillus cereus 03BB102]
gi|227003405|gb|ACP13148.1| GTP-binding protein YchF [Bacillus anthracis str. CDC 684]
gi|228583879|gb|EEK42037.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
m1293]
gi|228641242|gb|EEK97549.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST26]
gi|228688833|gb|EEL42664.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
Rock3-42]
gi|228810480|gb|EEM56833.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar monterrey BGSC 4AJ1]
gi|228829200|gb|EEM74837.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pondicheriensis BGSC 4BA1]
gi|228841567|gb|EEM86683.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar pulsiensis BGSC 4CC1]
gi|229266268|gb|ACQ47905.1| GTP-binding protein YchF [Bacillus anthracis str. A0248]
gi|298723791|gb|EFI64513.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
SJ1]
gi|324329426|gb|ADY24686.1| GTP-binding protein YchF [Bacillus thuringiensis serovar finitimus
YBT-020]
gi|358356023|dbj|BAL21195.1| GTP-binding protein YchF [Bacillus cereus NC7401]
gi|364515191|gb|AEW58590.1| GTP-binding and nucleic acid-binding protein YchF [Bacillus cereus
F837/76]
gi|384389190|gb|AFH86851.1| GTP-binding protein [Bacillus anthracis str. H9401]
gi|401080905|gb|EJP89187.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
IS075]
gi|401093171|gb|EJQ01286.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AND1407]
gi|401181507|gb|EJQ88655.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
ISP3191]
gi|401201188|gb|EJR08064.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-A12]
gi|401216334|gb|EJR23046.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MSX-D12]
gi|401238192|gb|EJR44633.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD102]
gi|401795631|gb|AFQ09490.1| GTP-binding protein YchF [Bacillus cereus FRI-35]
gi|401821928|gb|EJT21082.1| GTP-binding protein YchF [Bacillus anthracis str. UR-1]
gi|403392425|gb|EJY89678.1| GTP-binding protein YchF [Bacillus anthracis str. BF1]
Length = 366
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|423557011|ref|ZP_17533314.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MC67]
gi|423671023|ref|ZP_17646052.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM034]
gi|401193786|gb|EJR00788.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MC67]
gi|401294517|gb|EJS00145.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM034]
Length = 366
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFATNENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|42784671|ref|NP_981918.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus cereus
ATCC 10987]
gi|42740603|gb|AAS44526.1| GTP-binding protein YchF [Bacillus cereus ATCC 10987]
Length = 366
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|225157618|ref|ZP_03725009.1| GTP-binding protein YchF [Diplosphaera colitermitum TAV2]
gi|224802741|gb|EEG20993.1| GTP-binding protein YchF [Diplosphaera colitermitum TAV2]
Length = 367
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 212/368 (57%), Positives = 276/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD R +VL ++K+Q
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDERAYVLQKIAKTQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+PA++E VDIAGLVKGAS+GEGLGN+FL++IREVD+I+QVVRCFED+DIVH G +DP
Sbjct: 62 VVIPAAIEMVDIAGLVKGASKGEGLGNQFLANIREVDAIVQVVRCFEDSDIVHTMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++VI ELV +DLD ++KR+EK KK K+ D +++ AE A E++ L KPA
Sbjct: 122 VRDIEVITTELVLADLDSVQKRLEKTQKKAKSGDKEAQ---AEAALCERLIPHLDQNKPA 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA-SDLQSGRV 294
+ +N+ E +K LL+ KP++Y NVAE DLA NP V +V + + V
Sbjct: 179 NILPVNEEEARLLKLFQLLSAKPVLYACNVAEGDLATAEENPFVKQVAEFVRTHHDAAYV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA++E+EL EL +EE E+L LGV +SG+ +LIR+TY+LLGL+TYFT+GEKE +AWT
Sbjct: 239 PISARIESELVELSAEEAKEFLKDLGVDDSGVSSLIRATYALLGLQTYFTAGEKEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIH+DFEKGFI+AE V+Y+D V GS AAARE G R EGK+Y+ Q+G
Sbjct: 299 IVKGWKAPQAAGVIHTDFEKGFIKAEVVSYEDLVRLGSTAAAREAGKYRLEGKEYVFQDG 358
Query: 415 DVMLFRFN 422
DV LFRFN
Sbjct: 359 DVALFRFN 366
>gi|412990481|emb|CCO19799.1| GTP-dependent nucleic acid-binding protein EngD [Bathycoccus
prasinos]
Length = 371
Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust.
Identities = 216/371 (58%), Positives = 278/371 (74%), Gaps = 2/371 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ EN AQ ANFPFCTIEPNVGIVAVPD RL VLS +S
Sbjct: 1 MSLKTGIVGLPNVGKSTLFNALTENAAAQTANFPFCTIEPNVGIVAVPDERLKVLSQISS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ +PA VE VDIAGLVKGAS+G+GLGNKFLS+IRE D+I+ VRCF+D++++HV+G+V
Sbjct: 61 SENIIPAFVEIVDIAGLVKGASEGQGLGNKFLSNIRECDAIIHTVRCFDDDEVIHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD-AEKAALEKIQQALMDGK 233
+P DV IN EL SDL Q+E+R+++LKKGKAK K ++ AE LE++ +L G
Sbjct: 121 NPVEDVATINFELALSDLLQVERRIDRLKKGKAKSPTEKAQEAAELEVLERVSLSLESGI 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSG 292
P R + L + E + L LLT KP IY ANV ESDL GS N +V +++LA+ S
Sbjct: 181 PVRVLKLCEDESVLLSTLNLLTQKPCIYAANVCESDLRTKGSGNIYVENLLDLANSEGSA 240
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+SA++E+EL ++ EER +L LGV E GL L+R+ Y L L+TYFT+GEKET+A
Sbjct: 241 VCIVSAKIESELVQMELEEREFFLEELGVKEVGLPALVRAVYKQLKLQTYFTTGEKETRA 300
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G TAPQAAGVIH+DFE+GFI+AETV+Y D+V + A A+EKGL R EGK+Y+V+
Sbjct: 301 WTTKIGATAPQAAGVIHTDFERGFIKAETVSYQDYVVSEGFAKAKEKGLWRLEGKEYVVK 360
Query: 413 EGDVMLFRFNV 423
EGD+M+F+FNV
Sbjct: 361 EGDIMVFKFNV 371
>gi|304317215|ref|YP_003852360.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302778717|gb|ADL69276.1| GTP-binding protein YchF [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 363
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 271/367 (73%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKST+FNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL+ L+ + Q
Sbjct: 1 MEIGIVGLPNVGKSTIFNAITQAG-AECANYPFCTIEPNVGIVSVPDNRLYELAKIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++I HV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNITHVEGNIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++I LELV +DL+ IEKR+ K K D + E LEKI+ L DGKP R
Sbjct: 120 IRDIEIITLELVLADLEVIEKRIAKTSKYAKNDKSAAF---ELNILEKIKNTLDDGKPVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ ++ E + QL LLT KP++Y AN++E DL N +V ++ A +S + I
Sbjct: 177 TMNFDEDELPFVNQLMLLTSKPVMYAANISEDDLISGKENEYVKKLKEYAEKEKSEVIVI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL+ LP EE+ E L+ G+ E GL N+IR YSLLGL T+FT+G KE +AWTI+
Sbjct: 237 SAKIEEELSSLPDEEKYELLSEYGLKEPGLNNIIRHGYSLLGLITFFTAGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+DFEKGFIRAE ++Y D++ +G AA+EKGL+R EGKDY+V++GD+
Sbjct: 297 KGTKAPQAAGKIHTDFEKGFIRAEVISYKDYIESGGEVAAKEKGLMRLEGKDYVVEDGDI 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|423451276|ref|ZP_17428129.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X1-1]
gi|423490623|ref|ZP_17467305.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BtB2-4]
gi|423496347|ref|ZP_17472991.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER057]
gi|423496859|ref|ZP_17473476.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER074]
gi|423597268|ref|ZP_17573268.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD078]
gi|423659673|ref|ZP_17634842.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM022]
gi|423672754|ref|ZP_17647693.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM062]
gi|401146284|gb|EJQ53800.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X1-1]
gi|401149529|gb|EJQ57000.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER057]
gi|401163279|gb|EJQ70626.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
CER074]
gi|401238800|gb|EJR45232.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD078]
gi|401304301|gb|EJS09858.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM022]
gi|401311268|gb|EJS16575.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VDM062]
gi|402428968|gb|EJV61059.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BtB2-4]
Length = 366
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|190572921|ref|YP_001970766.1| GTP-dependent nucleic acid-binding protein EngD [Stenotrophomonas
maltophilia K279a]
gi|424667181|ref|ZP_18104206.1| GTP-dependent nucleic acid-binding protein engD [Stenotrophomonas
maltophilia Ab55555]
gi|190010843|emb|CAQ44452.1| putative ATP/GTP-binding protein [Stenotrophomonas maltophilia
K279a]
gi|401069316|gb|EJP77838.1| GTP-dependent nucleic acid-binding protein engD [Stenotrophomonas
maltophilia Ab55555]
Length = 363
Score = 429 bits (1104), Expect = e-118, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+ +
Sbjct: 175 GKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|403236790|ref|ZP_10915376.1| GTP-binding protein YchF [Bacillus sp. 10403023]
Length = 366
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ INLEL+ +DL+ ++KR++++ K K KD ++ AE L ++++A + +
Sbjct: 120 DPIADIETINLELILADLESVDKRIDRVAKLAKQKDKEAV---AEHEVLVQLKEAFENEQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V + + +K + LLT KP++YVANV E D+ADP SN +V V A +
Sbjct: 177 PARAVEFTEEQMKYVKGMHLLTSKPVLYVANVGEDDVADPSSNEYVQLVREFAQKDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIESEIVELEGEEKEMFLEELGIEESGLDQLIRAAYHLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAETV+Y+D +A GS+ ARE G +R EGK+YIVQ+
Sbjct: 297 TFRKGMKAPQCAGIIHTDFERGFIRAETVSYEDLLAGGSMNGAREAGKVRLEGKEYIVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|339443569|ref|YP_004709574.1| putative GTPase [Clostridium sp. SY8519]
gi|338902970|dbj|BAK48472.1| predicted GTPase [Clostridium sp. SY8519]
Length = 366
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 281/370 (75%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V+VPD RL++L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVSVPDERLNLLGELYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED ++VHV+GK+DP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVVHVDGKIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
SD++ INLEL+FSD++ +++R+ K KG D + AE L++I+ L DGK A+
Sbjct: 120 ASDIETINLELIFSDIEILDRRIAKGSKGARMDKKLA---AEVEFLKRIKAHLEDGKLAK 176
Query: 237 SVTLNDFERDS--IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
+ L+D E + + L LLT KP+IY ANV+E DLAD G SNPHV V LA + SG
Sbjct: 177 TFELSDDEDEQAFFRSLNLLTAKPVIYAANVSEDDLADDGASNPHVAAVRELAKEEGSGV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I A++E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL ++ T+GE ET+AW
Sbjct: 237 FVICAKIEEEMAELDDDEKAMFLEELGIKESGLEKLIQASYDLLGLMSFLTAGEDETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAG IH+DFE+GFIRAE V Y D + GSLAAAREKGL+ EGK+Y+VQ+
Sbjct: 297 TIRKGTKAPQAAGKIHTDFERGFIRAEVVNYKDLLECGSLAAAREKGLVGLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVILFRFNV 366
>gi|386760804|ref|YP_006234021.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. JS]
gi|384934087|gb|AFI30765.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. JS]
Length = 366
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVYEFEILSKLKEAFES 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 175 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 295 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVIHFRFNV 366
>gi|398309087|ref|ZP_10512561.1| GTP-binding protein YchF [Bacillus mojavensis RO-H-1]
Length = 366
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A + K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFDILSKLKEAFENEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNEYVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGKDY+V++
Sbjct: 297 TFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|257871371|ref|ZP_05651024.1| translation-associated GTPase [Enterococcus gallinarum EG2]
gi|257805535|gb|EEV34357.1| translation-associated GTPase [Enterococcus gallinarum EG2]
Length = 366
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESINKRYARV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ + E+ ++ L LLT KP++YVANVAE D+A+ NP+V V A +
Sbjct: 176 LSARSIEFTEEEQKIVRGLFLLTTKPVLYVANVAEDDVANAEENPYVKSVKEFAESEHAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ ISA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVISARAEEEIAELDDEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT R G+ APQAAG+IH+DFE+GFIRAETV+++D G++ AA+E G +R EGK+Y+VQ
Sbjct: 296 WTFRKGIKAPQAAGIIHTDFERGFIRAETVSFEDLDKYGNMHAAKEAGRVRLEGKEYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|418030664|ref|ZP_12669149.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SC-8]
gi|351471723|gb|EHA31836.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SC-8]
Length = 376
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 70 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 130 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFES 184
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 185 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 244
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 245 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 304
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 305 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 364
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 365 QDGDVIHFRFNV 376
>gi|363897971|ref|ZP_09324508.1| GTP-binding protein YchF [Oribacterium sp. ACB7]
gi|361957616|gb|EHL10923.1| GTP-binding protein YchF [Oribacterium sp. ACB7]
Length = 364
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/368 (57%), Positives = 275/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I LEL+FSDL+ +++RM K KK D +K E LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMAKTKKLANNDKDAK---KEYTLLEKLHTHLEEGKLAI 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
+ + + + L LLT KP+IY NV E LAD G SNP+V +V A S
Sbjct: 177 NFEAEEEDAAFLDSLGLLTRKPVIYACNVGEESLADDGASNPYVQKVREYAKKNHSESFV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWTI
Sbjct: 237 ISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGL+R EGK+Y++Q+GD
Sbjct: 297 KKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLVRMEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|404329017|ref|ZP_10969465.1| GTP-binding protein YchF [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 366
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GI+GLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL L+ +
Sbjct: 1 MSLTTGIIGLPNVGKSTLFNAITQAG-AEMANYPFCTIEPNVGIVSVPDQRLDRLTDMYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP + EF DIAGLVKGAS+GEGLGN+FL++IREVD+I VVRCF+D +I HV+GK+
Sbjct: 60 PKRTVPTTFEFTDIAGLVKGASKGEGLGNQFLANIREVDAISHVVRCFDDKNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+Q+ KR+++++K + KD QS + E +AL K+++A GK
Sbjct: 120 DPVEDIETINLELILADLEQVNKRIDRIEKMARQKDKQSIV---EYSALSKLKEAFDQGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V L E +IK L+ KP++YVANV+E D+A P N +V V A +
Sbjct: 177 PARHVALTKEEEAAIKPFNFLSKKPVLYVANVSEDDIAAPEQNDYVQAVEKFAEKDGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA++E+E+ EL +EE+ +L LG+ SGL L+ Y LLGL TYFT+GEKE +AW
Sbjct: 237 VAISARIESEIAELEAEEKKAFLKDLGLKSSGLDRLVAKAYQLLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + G APQAAG+IHSDFE+GFIRAE ++Y D VA GS AAREKG LR EGKDYI+Q+
Sbjct: 297 TFKQGTKAPQAAGIIHSDFERGFIRAEIISYQDLVADGSEIAAREKGHLRLEGKDYIMQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVNFRFNV 366
>gi|375364499|ref|YP_005132538.1| putative GTP-binding protein YLF2 [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|384267605|ref|YP_005423312.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385267007|ref|ZP_10045094.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. 5B6]
gi|387900746|ref|YP_006331042.1| translation-associated GTPase [Bacillus amyloliquefaciens Y2]
gi|394994131|ref|ZP_10386861.1| GTP-binding protein YchF [Bacillus sp. 916]
gi|421729522|ref|ZP_16168652.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429507377|ref|YP_007188561.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|451344776|ref|YP_007443407.1| GTP-binding protein YchF [Bacillus amyloliquefaciens IT-45]
gi|452857684|ref|YP_007499367.1| putative GTPase with RNA binding site [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|371570493|emb|CCF07343.1| putative GTP-binding protein YLF2 [Bacillus amyloliquefaciens
subsp. plantarum CAU B946]
gi|380500958|emb|CCG51996.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens subsp. plantarum YAU B9601-Y2]
gi|385151503|gb|EIF15440.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp. 5B6]
gi|387174856|gb|AFJ64317.1| translation-associated GTPase [Bacillus amyloliquefaciens Y2]
gi|393805017|gb|EJD66406.1| GTP-binding protein YchF [Bacillus sp. 916]
gi|407076492|gb|EKE49475.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|429488967|gb|AFZ92891.1| GTP-binding protein YchF [Bacillus amyloliquefaciens subsp.
plantarum AS43.3]
gi|449848534|gb|AGF25526.1| GTP-binding protein YchF [Bacillus amyloliquefaciens IT-45]
gi|452081944|emb|CCP23718.1| putative GTPase with RNA binding site [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 366
Score = 429 bits (1103), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFDILSKLKEAFEQEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSDNEYVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G +R EGK+Y+VQ+
Sbjct: 297 TFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|308175798|ref|YP_003922503.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens DSM 7]
gi|384161686|ref|YP_005543759.1| GTP-binding protein YchF [Bacillus amyloliquefaciens TA208]
gi|384166608|ref|YP_005547987.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens LL3]
gi|384170799|ref|YP_005552177.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens XH7]
gi|307608662|emb|CBI45033.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens DSM 7]
gi|328555774|gb|AEB26266.1| GTP-binding protein YchF [Bacillus amyloliquefaciens TA208]
gi|328914163|gb|AEB65759.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens LL3]
gi|341830078|gb|AEK91329.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens XH7]
Length = 366
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFDILSKLKEAFEQEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSGNEYVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G +R EGK+Y+VQ+
Sbjct: 297 TFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|403669898|ref|ZP_10935074.1| GTP-dependent nucleic acid-binding protein [Kurthia sp. JC8E]
Length = 366
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 274/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLDKLTEMVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V S EF DIAG+VKGASQGEGLGNKFLSHIREVD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVATSFEFTDIAGIVKGASQGEGLGNKFLSHIREVDAITQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++VINLEL+ +DL+ ++KR K+ K K KD +S E A LEK+++A +
Sbjct: 120 DPISDIEVINLELILADLESVDKRYAKVSKLAKQKDKESM---EEAAVLEKVKEAFANEM 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L D E+ IK L LLT+KP +YVANV+E ++++ N +V +V A+ +
Sbjct: 177 PARSVDLTDEEKKIIKGLSLLTLKPALYVANVSEDEVSNSEENDYVKQVREYAAKEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ +L +E+ +L LG+ ESGL LI++ YSLLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIEEEIAQLDDDEKAMFLEELGIQESGLDKLIKAAYSLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAET++Y+D V GS +AA+E G LR EGK+Y+V +
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETISYEDLVEFGSKSAAKEAGRLRLEGKEYVVND 356
Query: 414 GDVMLFRFNV 423
GDVM F FNV
Sbjct: 357 GDVMEFLFNV 366
>gi|402778262|ref|YP_006632206.1| GTPase with RNA binding site [Bacillus subtilis QB928]
gi|402483441|gb|AFQ59950.1| Putative GTPase with RNA binding site [Bacillus subtilis QB928]
Length = 395
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 30 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 88
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 89 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 148
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 149 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFES 203
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 204 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 263
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 264 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 323
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 324 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 383
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 384 QDGDVIHFRFNV 395
>gi|302389209|ref|YP_003825030.1| GTP-binding protein YchF [Thermosediminibacter oceani DSM 16646]
gi|302199837|gb|ADL07407.1| GTP-binding protein YchF [Thermosediminibacter oceani DSM 16646]
Length = 364
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/367 (56%), Positives = 277/367 (75%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVG+VAVPD RL L+ L Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGVVAVPDRRLDELAKLENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++ FVDIAGLV+GAS+GEGLGNKFLSHIREVD+I VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPATIRFVDIAGLVRGASRGEGLGNKFLSHIREVDAIAHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+F+DL+ + +R++++ K +AK + + + E + LE+++++L PAR
Sbjct: 120 IRDIETINLELIFADLETLGRRIDRVSK-QAKSGEKQYLE-ELSVLERLKESLEKNLPAR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+V L + E+ ++QLCLLT KP++YVAN++E DL G N V V A S +++
Sbjct: 178 AVDLTEEEQKIVRQLCLLTAKPVLYVANISEDDLIAGGENELVKRVREYAEKEGSQVISL 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A+VEAEL +LP E+VE L++ G+ E GL +IR+ Y LLGL T+FT+G KE +AWTIR
Sbjct: 238 CAKVEAELADLPDPEKVELLSAYGLDEPGLNRVIRAGYRLLGLITFFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAE ++Y D +A GS AA+EKGL+R EGKDY+V++GDV
Sbjct: 298 EGTKAPQAAGRIHSDFERGFIRAEVISYADLMACGSQQAAKEKGLVRLEGKDYVVRDGDV 357
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 358 IFFRFNV 364
>gi|16081144|ref|NP_391972.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. subtilis str. 168]
gi|221312074|ref|ZP_03593921.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. 168]
gi|221316399|ref|ZP_03598204.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. NCIB 3610]
gi|221321312|ref|ZP_03602606.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. JH642]
gi|221325595|ref|ZP_03606889.1| translation-associated GTPase [Bacillus subtilis subsp. subtilis
str. SMY]
gi|321313652|ref|YP_004205939.1| GTP-binding protein YchF [Bacillus subtilis BSn5]
gi|384177748|ref|YP_005559133.1| hypothetical protein I33_4261 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|428281772|ref|YP_005563507.1| translation-associated GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|452912444|ref|ZP_21961072.1| 50S ribosome-binding GTPase family protein [Bacillus subtilis
MB73/2]
gi|586848|sp|P37518.1|ENGD_BACSU RecName: Full=GTP-dependent nucleic acid-binding protein EngD
gi|467376|dbj|BAA05222.1| unknown [Bacillus subtilis]
gi|2636639|emb|CAB16129.1| putative GTPase with RNA binding site [Bacillus subtilis subsp.
subtilis str. 168]
gi|291486729|dbj|BAI87804.1| translation-associated GTPase [Bacillus subtilis subsp. natto
BEST195]
gi|320019926|gb|ADV94912.1| GTP-binding protein YchF [Bacillus subtilis BSn5]
gi|349596972|gb|AEP93159.1| hypothetical protein I33_4261 [Bacillus subtilis subsp. subtilis
str. RO-NN-1]
gi|407962946|dbj|BAM56186.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7613]
gi|407966958|dbj|BAM60197.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
BEST7003]
gi|452117472|gb|EME07866.1| 50S ribosome-binding GTPase family protein [Bacillus subtilis
MB73/2]
Length = 366
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFES 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 175 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 295 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVIHFRFNV 366
>gi|332980994|ref|YP_004462435.1| GTP-binding protein YchF [Mahella australiensis 50-1 BON]
gi|332698672|gb|AEE95613.1| GTP-binding protein YchF [Mahella australiensis 50-1 BON]
Length = 364
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 280/368 (76%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPN+G+V VPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEVANYPFCTIEPNMGVVPVPDERLDKLAEIFHPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEF DIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFE+ D+VHV G VDP
Sbjct: 60 KVTPAVVEFFDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFENPDVVHVEGTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ IN+EL+ +D++ +E+RME+ K + D Q++ E LE+I+ L +G+PA
Sbjct: 120 IRDIETINIELILADIEVLERRMERTHKAARGGDKQAQW---ELDILERIKHVLDEGQPA 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
+ L+ E++ +QL LLT KP++YVAN+ E + P SNP+V +VM+ A + S +
Sbjct: 177 KMCQLDGDEQEFARQLQLLTYKPVLYVANIDEDSITQPESNPYVKKVMDYAKNEGSEVIP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
+ A++E E+ +L +EE+ ++ +G+ +SGL LI+++Y LLGL ++ T+G KE +AWTI
Sbjct: 237 LCAKLEEEIVQLDNEEKKLFMEEMGLKQSGLERLIKASYELLGLMSFLTAGPKEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAGVIHSDFE+GFIRAE V+Y+D +A GSLAAAREKGL+RSEGKDY++Q+GD
Sbjct: 297 KRGTKAPQAAGVIHSDFERGFIRAEIVSYEDMLACGSLAAAREKGLMRSEGKDYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|125973394|ref|YP_001037304.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
thermocellum ATCC 27405]
gi|256004371|ref|ZP_05429352.1| GTP-binding protein YchF [Clostridium thermocellum DSM 2360]
gi|281417596|ref|ZP_06248616.1| GTP-binding protein YchF [Clostridium thermocellum JW20]
gi|385778691|ref|YP_005687856.1| GTP-binding protein YchF [Clostridium thermocellum DSM 1313]
gi|419722955|ref|ZP_14250091.1| GTP-binding protein YchF [Clostridium thermocellum AD2]
gi|419724697|ref|ZP_14251756.1| GTP-binding protein YchF [Clostridium thermocellum YS]
gi|125713619|gb|ABN52111.1| GTP-binding protein YchF [Clostridium thermocellum ATCC 27405]
gi|255991655|gb|EEU01756.1| GTP-binding protein YchF [Clostridium thermocellum DSM 2360]
gi|281408998|gb|EFB39256.1| GTP-binding protein YchF [Clostridium thermocellum JW20]
gi|316940371|gb|ADU74405.1| GTP-binding protein YchF [Clostridium thermocellum DSM 1313]
gi|380771916|gb|EIC05777.1| GTP-binding protein YchF [Clostridium thermocellum YS]
gi|380781012|gb|EIC10674.1| GTP-binding protein YchF [Clostridium thermocellum AD2]
Length = 364
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 275/367 (74%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL+ L+ + K +
Sbjct: 1 MKMGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLNKLAEMYKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV G VDP
Sbjct: 60 KVTPTTIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+ I +EL+ +D++ +E+R+++ +K S K E E+I + +GKP R
Sbjct: 120 VRDVETIEMELILADMEVLERRIDRTRK--MLKSGDKKYQVELDIYERIMKTFEEGKPVR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++ ++ E+ + QL LLT KP++Y ANV+E D+ NP V +++N A + S + I
Sbjct: 178 SMSFSEEEKKIVDQLFLLTSKPVLYAANVSEDDINSDKPNPLVEKLVNYAKNEGSEVMVI 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E E+ +L EE+ E+L LG+SESGL LI+++Y LLGL ++ T+G +E +AWTI
Sbjct: 238 CAKIEEEIAQLDDEEKAEFLKELGLSESGLDRLIKASYRLLGLISFLTAGPQEVRAWTIV 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE VAYDD + AGS A+EKGL+RSEGKDY++Q+GDV
Sbjct: 298 KGTKAPQAAGKIHSDFEKGFIRAEVVAYDDLIKAGSYTIAKEKGLVRSEGKDYVMQDGDV 357
Query: 417 MLFRFNV 423
LFRFNV
Sbjct: 358 TLFRFNV 364
>gi|392940671|ref|ZP_10306315.1| LOW QUALITY PROTEIN: GTP-binding protein YchF [Thermoanaerobacter
siderophilus SR4]
gi|392292421|gb|EIW00865.1| LOW QUALITY PROTEIN: GTP-binding protein YchF [Thermoanaerobacter
siderophilus SR4]
Length = 362
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/367 (56%), Positives = 271/367 (73%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVGIV+VPD RL LS + Q
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AECANYPFCTIEPNVGIVSVPDERLDFLSKIENPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA+++FVDIAGLVKGAS+GEGLGNKFLSHIREVD+IL VVRCFED++IVHV G +DP
Sbjct: 60 KIIPATIKFVDIAGLVKGASKGEGLGNKFLSHIREVDAILNVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV++I LEL+ +D++ IE+R++K K D ++ E LE ++ L +GKP R
Sbjct: 120 IRDVEIITLELILADMEVIERRLQKTSKLARNDKKAAF---EVEVLEN-KKGLDEGKPVR 175
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ + E+ + QL LLT KP++YVAN++E DL N +V ++ A + S + I
Sbjct: 176 ALQFTEEEKSFVSQLMLLTYKPVMYVANISEEDLISGEENQYVKQLKEYAENENSQVLVI 235
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E EL L EER E L G++E GL N+IR YSLLGL T+FT+G KE AWTI+
Sbjct: 236 SAKIEEELASLSDEERNELLREYGLAEPGLNNIIRHGYSLLGLITFFTAGPKEVHAWTIK 295
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFEKGFIRAE ++Y+D V AGS AAARE GL+R EGKDY++Q+GD+
Sbjct: 296 KGTKAPQAAGKIHSDFEKGFIRAEVISYEDLVKAGSQAAAREMGLMRLEGKDYVMQDGDI 355
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 356 VVFRFNV 362
>gi|47568674|ref|ZP_00239371.1| GTP-binding protein YchF [Bacillus cereus G9241]
gi|47554662|gb|EAL13016.1| GTP-binding protein YchF [Bacillus cereus G9241]
Length = 366
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+G+V
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|167629109|ref|YP_001679608.1| GTP-binding protein YchF [Heliobacterium modesticaldum Ice1]
gi|167591849|gb|ABZ83597.1| GTP-binding protein ychf [Heliobacterium modesticaldum Ice1]
Length = 366
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/371 (57%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MPVQAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDPRLDKLTEMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA V FVDIAGLV+GAS+GEGLGNKFLSHIREVD+++ VVRCF D D+ HV+GKV
Sbjct: 60 PNRVVPAVVRFVDIAGLVRGASKGEGLGNKFLSHIREVDAVIHVVRCFADPDVTHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
P D+D I LEL+ SDL+ +E+R+++++K K+ D +++ E A L++++ A DGK
Sbjct: 120 SPLRDIDTIELELILSDLEAVERRLDRVQKMLKSGDKKAQ---QELAVLQRLRDAFEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ E + ++ LLT KP++YVANV+E DL NP V +V A +G
Sbjct: 177 PARSIDWTPEEAEIVRNQFLLTSKPVLYVANVSEDDLGK-ADNPLVQDVRARADREGAGV 235
Query: 294 VTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++EAE+ EL EER +L LG+ ESGL LIR TY+LLGL TYFT+G +E +A
Sbjct: 236 VVICAKIEAEIAELTDPEERALFLKDLGLKESGLDRLIRETYALLGLITYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G APQAAGVIH+DFE+GFIRAE AYDD VA GS AAREKGL R EGK+Y+++
Sbjct: 296 WTIPRGTKAPQAAGVIHTDFERGFIRAEVTAYDDLVACGSQTAAREKGLQRLEGKEYVMK 355
Query: 413 EGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 356 DGDVVHFRFNV 366
>gi|145342229|ref|XP_001416160.1| Nucleic acid binding GTPase, translation factor, putative
[Ostreococcus lucimarinus CCE9901]
gi|144576385|gb|ABO94453.1| Nucleic acid binding GTPase, translation factor, putative
[Ostreococcus lucimarinus CCE9901]
Length = 419
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/376 (57%), Positives = 271/376 (72%), Gaps = 6/376 (1%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
S SL+ GIVGLPNVGKSTLFNA+VEN +AQAANFPFCTIEPN G V V D RL VL+
Sbjct: 45 SNCRASLKTGIVGLPNVGKSTLFNALVENSRAQAANFPFCTIEPNFGTVPVLDGRLDVLA 104
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
+S ++ VP +VE VDIAGLV+GAS+G+GLGNKFL++IRE D+I+ VVRCF+D++IVHV
Sbjct: 105 RISGTKNIVPTAVEIVDIAGLVEGASEGQGLGNKFLANIRECDAIIHVVRCFDDDNIVHV 164
Query: 171 NGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK---DSQSKLKDAEKAALEKIQQ 227
NG VDPK D +IN EL SD+ QI+KR++K++K K K D Q+ + E L I
Sbjct: 165 NGSVDPKRDAAIINSELALSDMSQIQKRIDKVRKSKGKVHIDGQT--AETEIEILSNILT 222
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLA 286
L DGK R + LN+ E IK+L LLT KP IY AN+ E DL G +N H + LA
Sbjct: 223 QLEDGKQVRQLKLNEDELFVIKELNLLTAKPCIYAANLPEGDLPTNGATNVHFQALSKLA 282
Query: 287 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 346
+D ++G +SAQV AEL +L EER ++L+ +GV G LI Y L L TYFT+G
Sbjct: 283 TDSEAGLCAVSAQVAAELKDLTQEERDDFLSCIGVESDGTKELIEVAYRQLNLLTYFTTG 342
Query: 347 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEG 406
EKET+AWTI+ G TAPQAA VIH+DFEKGFI+AETV YDDFV +G A A+EKG+ + EG
Sbjct: 343 EKETRAWTIKRGFTAPQAAAVIHTDFEKGFIKAETVHYDDFVTSGGFAGAKEKGVWQLEG 402
Query: 407 KDYIVQEGDVMLFRFN 422
KDY+VQEGDV++F+ N
Sbjct: 403 KDYVVQEGDVIVFKVN 418
>gi|393198846|ref|YP_006460688.1| GTPase [Solibacillus silvestris StLB046]
gi|327438177|dbj|BAK14542.1| predicted GTPase [Solibacillus silvestris StLB046]
Length = 366
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TIEPNVG V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIEPNVGSVTVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS GEGLGNKFL+HIREVD+I QVVRCFED +I HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASTGEGLGNKFLAHIREVDAICQVVRCFEDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VINLEL+ +D++ ++KR+ ++ K K KD ++ + E+ L+K++ L K
Sbjct: 120 NPIDDIEVINLELILADMESVDKRIARVAKMAKQKDKEAMV---EEPILQKLKDVLEAEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D E+ IK L LLT+KP++YVANV+E ++ADP N +V V A+ +
Sbjct: 177 PARAADLSDDEKKVIKGLHLLTIKPMLYVANVSEDEVADPSENKYVKMVQEYAAAEGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E E++EL +E+ E+LA LG++ESGL LI+++YSLLGL TYFT+G +E +AW
Sbjct: 237 ITVCAKIEEEISELEDDEKKEFLAELGIAESGLDQLIKASYSLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IHSDFE+GFIRAETVAY D V GS AA+E G +R+EGK+Y+VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHSDFERGFIRAETVAYTDLVEYGSKPAAKEAGRVRAEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ F FNV
Sbjct: 357 GDVLEFLFNV 366
>gi|167757570|ref|ZP_02429697.1| hypothetical protein CLORAM_03120 [Clostridium ramosum DSM 1402]
gi|237735126|ref|ZP_04565607.1| translation-associated GTPase [Mollicutes bacterium D7]
gi|365831949|ref|ZP_09373493.1| GTP-binding protein YchF [Coprobacillus sp. 3_3_56FAA]
gi|374627142|ref|ZP_09699550.1| GTP-binding protein YchF [Coprobacillus sp. 8_2_54BFAA]
gi|167702567|gb|EDS17146.1| GTP-binding protein YchF [Clostridium ramosum DSM 1402]
gi|229381902|gb|EEO31993.1| translation-associated GTPase [Coprobacillus sp. D7]
gi|365261161|gb|EHM91089.1| GTP-binding protein YchF [Coprobacillus sp. 3_3_56FAA]
gi|373913687|gb|EHQ45524.1| GTP-binding protein YchF [Coprobacillus sp. 8_2_54BFAA]
Length = 366
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 272/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDYRLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + F DIAGLVKGAS+GEGLGNKFL +IRE D+I +VVRCF D D+ HV+G V
Sbjct: 60 PKKTVPTTFGFTDIAGLVKGASRGEGLGNKFLGNIRETDAICEVVRCFRDKDVTHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+F+DLD +EKR+ ++ KK ++ D ++KL E A LEK++ L K
Sbjct: 120 DPIRDIETINLELIFADLDTVEKRIGRIGKKAQSGDKEAKL---EVAILEKLKSTLEANK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR + + E D +KQ LLTMKPIIYVAN+ E DL DP +NPH N+V+ A+ +
Sbjct: 177 PARVIEFSKEEMDVVKQYTLLTMKPIIYVANLGEEDLEDPTTNPHYNKVVEFAAGEGADV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I A++E+EL + EE+ +L LG+ ESGL LI+ Y LLGLRTYFT+G +E +AW
Sbjct: 237 VPICAKIESELVGMDKEEKDLFLQDLGIEESGLDKLIKEAYKLLGLRTYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAP+ AG+IHSDF++GFI+AET ++DD V GS A +E G +R EGK Y+ Q+
Sbjct: 297 TFKEGMTAPEMAGIIHSDFQRGFIKAETYSFDDLVEYGSEHALKEAGKIRQEGKQYVGQD 356
Query: 414 GDVMLFRFNV 423
GD+MLF+FNV
Sbjct: 357 GDIMLFKFNV 366
>gi|408822211|ref|ZP_11207101.1| GTP-binding protein YchF [Pseudomonas geniculata N1]
Length = 363
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLGELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L+D E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+ +
Sbjct: 175 GKAGRSVGLDDEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|154688196|ref|YP_001423357.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
amyloliquefaciens FZB42]
gi|154354047|gb|ABS76126.1| EngD [Bacillus amyloliquefaciens FZB42]
Length = 366
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFDILSKLKEAFEQEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KP++YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPVLYVANVSEDEVADPSDNGYVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGEEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM AP+ AG+IH+DFE+GFIRAETVAY+D +A G ++ A+E G +R EGK+Y+VQ+
Sbjct: 297 TFRKGMKAPECAGIIHTDFERGFIRAETVAYEDLLAGGGMSGAKEAGKVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|374583833|ref|ZP_09656927.1| GTP-binding protein YchF [Desulfosporosinus youngiae DSM 17734]
gi|374419915|gb|EHQ92350.1| GTP-binding protein YchF [Desulfosporosinus youngiae DSM 17734]
Length = 366
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 276/372 (74%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDFRLQKLADMVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G V
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVEGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
+PK D++ I+LEL+ +D++ +EKR E KL K K +QS++ A LE+++
Sbjct: 120 NPKRDIETIDLELILADMESVEKRFERTAKLLKAGDKKAQSEI-----ALLERLKVVFNQ 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK AR++T D ERD +K LLT+KP++Y ANV+E L+ NP+V +VM +A++ +
Sbjct: 175 GKGARTLTFTDEERDLLKGFPLLTLKPVLYAANVSEGGLSTAADNPYVKQVMEIAAEEGA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + AQ+EAE+ EL ++E+ +L LG+ ESGL LIR + LLGL T+FT+G E K
Sbjct: 235 EVVVVCAQIEAEIAELEADEKDAFLEDLGLEESGLDRLIRVAFHLLGLMTFFTAGPLEVK 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP+AAGVIH+DFE GFIRAE V+Y DFV L AR+KGL+R EGK+YI+
Sbjct: 295 AWTIYQGTKAPKAAGVIHTDFEHGFIRAEVVSYQDFVEHNGLNGARDKGLVRLEGKEYIM 354
Query: 412 QEGDVMLFRFNV 423
+GD++ FRFNV
Sbjct: 355 NDGDIVHFRFNV 366
>gi|456738075|gb|EMF62752.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia EPM1]
Length = 363
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 216/372 (58%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+ +
Sbjct: 175 GKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +L LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLTDLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|379728110|ref|YP_005320295.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius DAT561]
gi|376319013|dbj|BAL62800.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius DAT561]
Length = 366
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TIEPNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIEPNVGIVEVPDDRLDQLTELFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+ EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PKKTVPATFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D+D INLEL+ +DL+ I KR ++ K K KD + AE A L+KI+ L G
Sbjct: 120 DPLADIDTINLELILADLETITKRYTRISKVAKTKDKDAL---AELAVLDKIKPTLEAGH 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R++ + E+ +K L LLT KPI+YVANV+E ++A+ +N +V +V N A+D +
Sbjct: 177 SVRTIEFTEEEQQIVKGLFLLTTKPILYVANVSEEEIANADNNHYVQQVRNFAADENAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A+ E E+ EL E++ E+L +LG+ SGL LIR+ Y LLGL TYFT+GE E AW
Sbjct: 237 IVICAKAEEEIAELDDEDKAEFLDALGIKISGLDLLIRAAYDLLGLATYFTAGEPEVHAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + G+ APQAAG+IHSDFE+GFIRAETV++ D G++ AA+E G +R EGKDYIVQ+
Sbjct: 297 TFKKGIKAPQAAGIIHSDFERGFIRAETVSFQDLSEYGNMQAAKEAGKVRLEGKDYIVQD 356
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 357 GDVMLFRFNV 366
>gi|196036125|ref|ZP_03103525.1| GTP-binding protein YchF [Bacillus cereus W]
gi|195991292|gb|EDX55260.1| GTP-binding protein YchF [Bacillus cereus W]
Length = 366
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ +P N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVINPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|311070632|ref|YP_003975555.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
atrophaeus 1942]
gi|419820982|ref|ZP_14344586.1| GTP-binding protein YchF [Bacillus atrophaeus C89]
gi|310871149|gb|ADP34624.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
atrophaeus 1942]
gi|388474893|gb|EIM11612.1| GTP-binding protein YchF [Bacillus atrophaeus C89]
Length = 366
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFADDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 120 DPIDDIETINLELILADMETVEKRIVRVSKLAKQKD-----KDAVIEFDILTKLKEAFEQ 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + + +KQL LLT KP++YVANV+E ++ADP N +V ++ AS ++
Sbjct: 175 EKPARSVEFTEEQNKLVKQLHLLTSKPVLYVANVSEDEVADPSGNEYVAKIREYASGEKA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 235 EVIVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IH+DFE+GFIRAETVAYDD + GS+AAA+E G +R EGK+YIV
Sbjct: 295 AWTFKRGMKAPECAGIIHTDFERGFIRAETVAYDDLLDGGSMAAAKEAGKVRLEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|296330021|ref|ZP_06872505.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. spizizenii ATCC 6633]
gi|296153060|gb|EFG93925.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus subtilis
subsp. spizizenii ATCC 6633]
Length = 366
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFEILSKLKEAFESEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGKDY+V++
Sbjct: 297 TFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|406667880|ref|ZP_11075631.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
isronensis B3W22]
gi|405384287|gb|EKB43735.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
isronensis B3W22]
Length = 366
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 279/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TIEPNVG V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIEPNVGSVTVPDERLDKLTELVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS GEGLGNKFL+HIREVD+I QVVRCFED +I HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASTGEGLGNKFLAHIREVDAICQVVRCFEDENITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VINLEL+ +D++ ++KR+ ++ K K KD ++ + E+ L+K++ L K
Sbjct: 120 NPIDDIEVINLELILADMESVDKRIARVAKMAKQKDKEAMV---EEPILQKLKDVLEAEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D E+ IK L LLT+KP++YVANV+E ++ADP N +V V A+ +
Sbjct: 177 PARAADLSDDEKKVIKGLHLLTIKPMLYVANVSEDEVADPSENKYVKMVQEYAAAEGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E E++EL +E+ E+LA LG++ESGL LI+++YSLLGL TYFT+G +E +AW
Sbjct: 237 ITVCAKIEEEISELEDDEKKEFLAELGIAESGLDQLIKASYSLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GM APQ AG+IH+DFE+GFIRAETVAY D V GS AA+E G +R+EGK+Y+VQ+
Sbjct: 297 TFRKGMKAPQCAGIIHTDFERGFIRAETVAYTDLVEYGSKPAAKEAGRVRAEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ F FNV
Sbjct: 357 GDVLEFLFNV 366
>gi|152977674|ref|YP_001377191.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
cytotoxicus NVH 391-98]
gi|152026426|gb|ABS24196.1| GTP-binding protein YchF [Bacillus cytotoxicus NVH 391-98]
Length = 366
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ ++KR+E++ K + KD ++ E L ++++A GK
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERVAKLARQKDKEAVF---EHEILVRLKEAFEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ + + +K L LLT K ++YVANV+E D+ DP N +V V A+ S
Sbjct: 177 PARTIEFTEEQMKVVKGLHLLTTKEMLYVANVSEEDIMDPSENQYVQRVKEFAAKENSQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G +R EGK+YIV++
Sbjct: 297 TFKKGMKAPQCAGVIHTDFERGFIRAETVSYTDLMEYGSMTAAKEAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMHFRFNV 366
>gi|194364507|ref|YP_002027117.1| GTP-dependent nucleic acid-binding protein EngD [Stenotrophomonas
maltophilia R551-3]
gi|194347311|gb|ACF50434.1| GTP-binding protein YchF [Stenotrophomonas maltophilia R551-3]
Length = 363
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|343521233|ref|ZP_08758201.1| GTP-binding protein YchF [Parvimonas sp. oral taxon 393 str. F0440]
gi|343396439|gb|EGV08976.1| GTP-binding protein YchF [Parvimonas sp. oral taxon 393 str. F0440]
Length = 364
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/368 (56%), Positives = 284/368 (77%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL+ L+ L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGLVNVPDERLNKLTELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA +EF DIAGLVKGAS+GEGLGNKFLSHIREVD+I++V+RCFED +IVHV+G+V+P
Sbjct: 60 RTIPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVDAIVEVIRCFEDENIVHVDGEVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+ INLEL+ SDL+ +EKR+EK +K K ++S ++ + LEKI L +GK R
Sbjct: 120 LRDVETINLELILSDLELVEKRLEKARKS-LKGNKSFQEEVD--LLEKILPVLEEGKSIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
S+ +D E+ +K LL++KPIIYVANV E D+ D G SN +V + + A + SG V
Sbjct: 177 SLNFDDNEKAILKNFSLLSVKPIIYVANVNEDDMLDEGKSNEYVKVLDDFAKNENSGIVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQ+E E++EL +E++E+L LG+SESG+ LI+ +Y+LLGL ++ T+G +ET+AWTI
Sbjct: 237 ISAQIEKEISELEEDEQIEFLNDLGISESGVSKLIKESYNLLGLMSFLTAGPEETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G TA AAG IHSD ++GFIRAE V YDD ++ GS+ AREKGL+R EGK+YI+Q+GD
Sbjct: 297 KIGTTAVNAAGKIHSDIQRGFIRAEIVNYDDLISLGSMVTAREKGLVRLEGKEYIMQDGD 356
Query: 416 VMLFRFNV 423
V+ FRFNV
Sbjct: 357 VVYFRFNV 364
>gi|332687253|ref|YP_004457027.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius ATCC 35311]
gi|332371262|dbj|BAK22218.1| GTP-binding and nucleic acid-binding protein YchF [Melissococcus
plutonius ATCC 35311]
Length = 366
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TIEPNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIEPNVGIVEVPDDRLDQLTELFQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+ EF DIAG+VKGASQGEGLGN+FLSHIR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PKKTVPATFEFTDIAGIVKGASQGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D+D INLEL+ +DL+ I KR ++ K K KD + AE A L+KI+ L G
Sbjct: 120 DPLADIDTINLELILADLETITKRYTRISKVAKTKDKDAL---AELAVLDKIKPTLEAGH 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R++ + E+ +K L LLT KPI+YVANV+E ++A+ +N +V +V N A+D +
Sbjct: 177 SVRTIEFTEEEQQIVKGLFLLTTKPILYVANVSEEEIANADNNHYVQQVRNFAADENAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A+ E E+ EL E++ E+L +LG+ SGL LIR+ Y LLGL TYFT+GE E AW
Sbjct: 237 IVICAKSEEEIAELDDEDKAEFLDALGIKISGLDLLIRAAYDLLGLATYFTAGEPEVHAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + G+ APQAAG+IHSDFE+GFIRAETV++ D G++ AA+E G +R EGKDYIVQ+
Sbjct: 297 TFKKGIKAPQAAGIIHSDFERGFIRAETVSFQDLSEYGNMQAAKEAGKVRLEGKDYIVQD 356
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 357 GDVMLFRFNV 366
>gi|449096553|ref|YP_007429044.1| GTP-dependent nucleic acid-binding protein [Bacillus subtilis XF-1]
gi|449030468|gb|AGE65707.1| GTP-dependent nucleic acid-binding protein [Bacillus subtilis XF-1]
Length = 376
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 279/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 70 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDA--EKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ ++ K K KD KDA E L K+++A
Sbjct: 130 DPIDDIETINLELILADMETVEKRITRVSKLAKQKD-----KDAVFEFEILSKLKEAFES 184
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 185 EKPARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENA 244
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E+E+ EL EE+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +
Sbjct: 245 EVIVVCAKIESEIAELEGEEKQMFLEELGIQESGLDQLIKASYSLLGLATYFTAGEQEVR 304
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGK+Y+V
Sbjct: 305 AWTFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKEYVV 364
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 365 KDGDVIHFRFNV 376
>gi|335044742|ref|ZP_08537765.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333758528|gb|EGL36085.1| GTP-binding protein YchF [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 364
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 211/368 (57%), Positives = 275/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+VAVPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGVVAVPDERLQLLSDLYHSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I+ VVRCF+D++++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLGNIRETDAIVHVVRCFDDDNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I LEL+FSDL+ +++RM K KK D +K E A LEK+ L +GK A
Sbjct: 120 IRDIETIELELIFSDLEVLDRRMAKTKKLANNDKDAK---KEYALLEKLHAHLEEGKLAI 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
+ + + + L LLT KP+IY NV E LAD G SN +V +V A S
Sbjct: 177 NFEAEEEDAAFLDSLGLLTRKPVIYACNVGEESLADDGASNQYVQKVREYAKKNHSESFV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISAQ+E E++EL EE+ EYL SLG+SESGL ++R++YSLLGL +Y T+GEKET+AWTI
Sbjct: 237 ISAQIEQEISELSDEEKGEYLESLGLSESGLDKIVRASYSLLGLMSYLTAGEKETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKGL+R EGK+Y++Q+GD
Sbjct: 297 KKGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDNGSLSAAREKGLVRMEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|344206158|ref|YP_004791299.1| GTP-binding protein YchF [Stenotrophomonas maltophilia JV3]
gi|343777520|gb|AEM50073.1| GTP-binding protein YchF [Stenotrophomonas maltophilia JV3]
Length = 363
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+ +
Sbjct: 175 GKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|167641728|ref|ZP_02399971.1| GTP-binding protein YchF [Bacillus anthracis str. A0193]
gi|177655282|ref|ZP_02936836.1| GTP-binding protein YchF [Bacillus anthracis str. A0174]
gi|254735150|ref|ZP_05192860.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus anthracis
str. Western North America USA6153]
gi|167510282|gb|EDR85685.1| GTP-binding protein YchF [Bacillus anthracis str. A0193]
gi|172080209|gb|EDT65301.1| GTP-binding protein YchF [Bacillus anthracis str. A0174]
Length = 366
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
D D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DSIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|375087217|ref|ZP_09733599.1| GTP-binding protein YchF [Megamonas funiformis YIT 11815]
gi|374562034|gb|EHR33369.1| GTP-binding protein YchF [Megamonas funiformis YIT 11815]
Length = 368
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 213/369 (57%), Positives = 272/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLKVLHEMYNS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFLSHIR+VD++ VVRCF DI HV G VD
Sbjct: 62 KKTTPASVSFVDIAGLVKGASRGEGLGNKFLSHIRQVDAVAHVVRCFASGDITHVEGSVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+++IN EL +DLD +EKR++++ + S +K AE+A LEK+++ + + PA
Sbjct: 122 PIRDIEIINTELCLADLDSVEKRLDRV--SRTAKSGNKEARAEEAVLEKVKKVVEEAIPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R L++ E + IK L LLT+KP +YVANV+E + A N +V +V A +G V
Sbjct: 180 RQAKLSEDELELIKDLNLLTLKPTLYVANVSEDEAATAENDNEYVAKVKEYAQKENAGVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+VE+E+ EL EE E+L+ LG+ ESGL LI++ + LLGL T+ T+GE E +AWT
Sbjct: 240 VISAKVESEIAELDEEEANEFLSDLGLDESGLNKLIKAAFKLLGLMTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSD E+GFIRAE V+YDD VA+GS+AAAREKG +R EGKDYI+Q+G
Sbjct: 300 IKVGTKAPQAAGKIHSDIERGFIRAEIVSYDDLVASGSVAAAREKGQVRVEGKDYIMQDG 359
Query: 415 DVMLFRFNV 423
DV FRFNV
Sbjct: 360 DVTHFRFNV 368
>gi|335429978|ref|ZP_08556873.1| GTP-binding protein YchF [Haloplasma contractile SSD-17B]
gi|334888394|gb|EGM26691.1| GTP-binding protein YchF [Haloplasma contractile SSD-17B]
Length = 366
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 209/373 (56%), Positives = 276/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDERLDKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAGLV+GAS+GEGLGN+FLSHIR+VD+I QVVRCF D++I HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGLVRGASKGEGLGNQFLSHIRQVDAICQVVRCFVDDNITHVDGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD----AEKAALEKIQQALM 230
+P D++ IN EL+ +D+DQI+KR+++++K Q K+KD AE L KI+
Sbjct: 120 EPIRDIETINFELILADMDQIDKRLKRIEK------QVKMKDKQYIAEFEVLAKIKVGFE 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ PARS L+ E + +K + LLT+KP++YVANV+E ++A P NP+V V AS
Sbjct: 174 NEVPARSQELSKDELEIVKHMQLLTLKPMLYVANVSEDEVATPDENPNVIRVKEFASQEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ +T+ A++E+E+ EL E + +L LG++ESGL LIR+ Y LLGL TYFT+GEKE
Sbjct: 234 AEVITVCAKIESEIVELDEESKEMFLEDLGITESGLDKLIRAAYDLLGLETYFTAGEKEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT GMTAPQ AG+IH+DF+KGFIRAETVAY D V GS AA+E G +R EGKDYI
Sbjct: 294 RAWTFIKGMTAPQCAGIIHTDFQKGFIRAETVAYKDLVQYGSEQAAKEAGKVRLEGKDYI 353
Query: 411 VQEGDVMLFRFNV 423
V++GDVM FRFNV
Sbjct: 354 VKDGDVMHFRFNV 366
>gi|254521390|ref|ZP_05133445.1| GTP-binding protein YchF [Stenotrophomonas sp. SKA14]
gi|219718981|gb|EED37506.1| GTP-binding protein YchF [Stenotrophomonas sp. SKA14]
Length = 363
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKEAAAR-----KPVLAKLQAALSD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKSGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|386717195|ref|YP_006183521.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia D457]
gi|384076757|emb|CCH11342.1| GTP-binding and nucleic acid-binding protein YchF [Stenotrophomonas
maltophilia D457]
Length = 363
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 215/372 (57%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNELAGIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DIVHV GKV
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL +
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALSE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ANV E +NPH+ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGF---DNNPHLEAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +I + YSLLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVINAAYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVRKGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|305676745|ref|YP_003868417.1| GTPase with RNA binding site [Bacillus subtilis subsp. spizizenii
str. W23]
gi|305414989|gb|ADM40108.1| putative GTPase with RNA binding site [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 366
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDDRLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + +F DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVR F D++I HV+GKV
Sbjct: 60 PKKTVPTAFQFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRAFSDDNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +D++ +EKR+ ++ K K KD ++ E L K+++A K
Sbjct: 120 DPIDDIETINLELILADMETVEKRITRVSKLAKQKDKEAVF---EFEILSKLKEAFESEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + ++ +KQL LLT KPI+YVANV+E ++ADP N +V ++ A+ +
Sbjct: 177 PARSVEFTEEQQKLVKQLHLLTSKPILYVANVSEDEVADPSGNENVAKIREYAAGENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LI+++YSLLGL TYFT+GE+E +AW
Sbjct: 237 IVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIKASYSLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IHSDFE+GFIRAETVAY+D +A G +A A+E G +R EGKDY+V++
Sbjct: 297 TFKKGMKAPECAGIIHSDFERGFIRAETVAYEDLLAGGGMAGAKEAGKVRLEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|402300574|ref|ZP_10820062.1| GTP-binding protein YchF [Bacillus alcalophilus ATCC 27647]
gi|401724299|gb|EJS97674.1| GTP-binding protein YchF [Bacillus alcalophilus ATCC 27647]
Length = 366
Score = 426 bits (1096), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFSDDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D++VINLEL+ +DL+ IEKR+ ++ GK ++ K AE LE +Q+ D KP
Sbjct: 120 NPIRDIEVINLELILADLESIEKRITRV--GKLAKTKDKEAVAELEVLEILQKTFEDEKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ ++ ++ +KQL LLT KP++YVANV+E DL G N +V V A+ S +
Sbjct: 178 ARSIEFSEEQQKIVKQLHLLTSKPVLYVANVSEEDLLGDGDNDYVKLVKEFAAAENSEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +AWT
Sbjct: 238 VVCAKIESEIAELDGEEKQMFLEELGIEESGLDQLIRAAYQLLGLETYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
R G APQAAG+IH+DFE+GFIRAE V+YDD + AGS+ A+E G +R EGKDY+VQ+G
Sbjct: 298 YRKGTKAPQAAGIIHTDFERGFIRAEIVSYDDLMEAGSMGQAKENGKVRLEGKDYVVQDG 357
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 358 DVIHFRFNV 366
>gi|58583223|ref|YP_202239.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae KACC 10331]
gi|84625059|ref|YP_452431.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae MAFF 311018]
gi|188575473|ref|YP_001912402.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas oryzae
pv. oryzae PXO99A]
gi|58427817|gb|AAW76854.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84368999|dbj|BAE70157.1| GTP-binding protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
gi|188519925|gb|ACD57870.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 363
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/372 (56%), Positives = 274/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+G+ K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLAGIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCF+++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFDNDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A +
Sbjct: 175 GKSGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|392395684|ref|YP_006432286.1| GTP-binding protein YchF [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526762|gb|AFM02493.1| GTP-binding protein YchF [Desulfitobacterium dehalogenans ATCC
51507]
Length = 366
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL VLS +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVQVPDARLQVLSEMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+D I LEL+ +D++ +EKR+E+ K S K AE A L ++++ L G
Sbjct: 120 DPKRDIDTIQLELILADMESVEKRLER--SAKLLKSGDKKALAEVALLNRLKETLDAGLA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ +D ER+ +K LL+MKP++Y ANV+E ++ADP +NP+V +V +A+ S V
Sbjct: 178 ARSLEFSDEERELLKSFPLLSMKPVLYAANVSEEEIADPDNNPYVRKVREIAAAENSEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++EAE+ EL E+ +L LG++ESGL LIR+ + LLGL TYFT+G+ E +AW
Sbjct: 238 VVCAKIEAEIAELEEGEKKVFLEDLGLAESGLDRLIRAAFHLLGLMTYFTAGQIEVRAWE 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIH+DFE+GFIRAE V+Y DFV G L A+EKGL+R EGK+Y++ +G
Sbjct: 298 IRRGMKAPQAAGVIHTDFERGFIRAEVVSYKDFVENGGLNGAKEKGLVRLEGKEYVMNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIVHFRFNV 366
>gi|449019775|dbj|BAM83177.1| GTP-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 441
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/442 (51%), Positives = 296/442 (66%), Gaps = 51/442 (11%)
Query: 32 LIGVLGITTTSSRRR-----------------FSSASKISMSLRAGIVGLPNVGKSTLFN 74
++G GI TT++ R +S+ + L+ GIVGLPNVGKSTLFN
Sbjct: 1 MLGFAGIVTTAAWARPVAVRQTQARYRSRPASLASSRSLRCKLQTGIVGLPNVGKSTLFN 60
Query: 75 AVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134
A+ E KA+AANFPFCTIEPN+G+V VPD RL VLS + S + VP +EFVDIAGLVKG
Sbjct: 61 ALCEQTKAEAANFPFCTIEPNIGVVTVPDSRLEVLSEIGGSSRIVPTYLEFVDIAGLVKG 120
Query: 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQ 194
AS+GEGLGN+FLSHIRE D+I+ VVRCF D +VHV G V PK D++ I+ EL+ +DL
Sbjct: 121 ASRGEGLGNRFLSHIRECDAIVHVVRCFMDERVVHVAGHVHPKQDIETIDTELMLADLAM 180
Query: 195 IEKRMEKLKK--------GKAKDSQSKL-KDAEKAALEKIQQALMDGKPARSVTLNDF-- 243
+EKR+E+L+K G + S+L +D E++ALE++ +AL G P R +L+D
Sbjct: 181 VEKRLERLRKPGSSRRSAGAGTMTSSQLAEDTERSALERVTKALDAGMPIRR-SLSDCTV 239
Query: 244 -ERDSIKQLCLLTMKPIIYVANVAESDLADPGSN------------------PHVNEVMN 284
ER ++++L LLT KP+IY ANVA+S LA V EV
Sbjct: 240 DERQALRRLGLLTAKPVIYAANVADSVLAAATETLAKAKMQANVWPDNESPLALVREVFE 299
Query: 285 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSE---SGLGNLIRSTYSLLGLRT 341
A+ Q+ V +SAQ+E+EL ELP ER +YL SLG+++ GL L+R+ Y LGL T
Sbjct: 300 YAALEQAPVVAVSAQLESELVELPPLEREQYLESLGINDLQNIGLRALVRAAYETLGLCT 359
Query: 342 YFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGL 401
+FT G +ET+AWTI G APQAAGVIHSDFE+GFIRAETV++ D V AGSL +ARE+GL
Sbjct: 360 FFTCGPQETRAWTIPRGTKAPQAAGVIHSDFERGFIRAETVSFVDLVKAGSLTSAREQGL 419
Query: 402 LRSEGKDYIVQEGDVMLFRFNV 423
+R+EGKDY+VQEGDV+LFRFNV
Sbjct: 420 VRAEGKDYVVQEGDVILFRFNV 441
>gi|427392913|ref|ZP_18886816.1| GTP-binding protein YchF [Alloiococcus otitis ATCC 51267]
gi|425730999|gb|EKU93827.1| GTP-binding protein YchF [Alloiococcus otitis ATCC 51267]
Length = 366
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 275/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPDPRL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDPRLDRLTDLVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D+++ HV+GKV
Sbjct: 60 PEKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAICHVVRCFDDSNVTHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+F+D + I+KR EK +K +AKD + A A L+KI+ AL DG
Sbjct: 120 DPASDIETINLELIFADQESIDKRYEKTRKQARAKDPDAV---ATLAVLDKIKPALEDGI 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P R++ ++ E +K L LLT KP++Y+ANVAE D++DP ++ ++ V +A +
Sbjct: 177 PVRALDFDEEEEKIVKSLFLLTSKPVLYIANVAEEDVSDPEASDYLQTVKEIADQEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA +E E+ L +ER +L LG+ E GL +IR +Y+LL L TYFT+G KE +AW
Sbjct: 237 VGISAAIEEEIAALDDDERDLFLEDLGIQEPGLNRVIRRSYNLLNLGTYFTAGPKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFE+GFIRAET++Y DF GS AARE G LR EGKDY+VQ+
Sbjct: 297 TFKKGMKAPQVAGIIHSDFERGFIRAETISYADFDDLGSEKAAREAGKLRQEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVM F+FNV
Sbjct: 357 GDVMEFKFNV 366
>gi|301056949|ref|YP_003795160.1| GTP-binding protein YchF [Bacillus cereus biovar anthracis str. CI]
gi|300379118|gb|ADK08022.1| conserved GTP-binding protein YchF [Bacillus cereus biovar
anthracis str. CI]
Length = 366
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIESEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+ +D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSCEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|292671029|ref|ZP_06604455.1| GTP-dependent nucleic acid-binding protein EngD [Selenomonas noxia
ATCC 43541]
gi|292647346|gb|EFF65318.1| GTP-dependent nucleic acid-binding protein EngD [Selenomonas noxia
ATCC 43541]
Length = 368
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 272/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDGRLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+++I EL +DL+ IEKRM K+ K S SK AE ALE+++ AL +GKPA
Sbjct: 122 PLRDIEIIETELCLADLEAIEKRMAKVT--KLMKSGSKEAKAEHMALERLKSALDEGKPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R V L+ E+ +++ L LLT KPI+Y+ANV E + A N +V V A+ + V
Sbjct: 180 REVELSIEEQATLRDLNLLTRKPILYIANVGEDEAATADAENLYVQTVKKYAARTGAEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TISA++E E+ EL +EE +L LG +ESGL LI +SLLGL+T+ T+GE E +AWT
Sbjct: 240 TISARLEEEIAELDAEEATAFLEDLGFAESGLDRLIHGAFSLLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGL+R EGKDYI+++G
Sbjct: 300 ITRGTTAPRAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLVRLEGKDYIMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFN+
Sbjct: 360 DVVNFRFNI 368
>gi|325914242|ref|ZP_08176592.1| GTP-binding protein YchF [Xanthomonas vesicatoria ATCC 35937]
gi|325539497|gb|EGD11143.1| GTP-binding protein YchF [Xanthomonas vesicatoria ATCC 35937]
Length = 363
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/372 (57%), Positives = 274/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKSGRAAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAATEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+SE GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLSEPGLNRVIRAAYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|317496036|ref|ZP_07954397.1| GTP-binding protein YchF [Gemella morbillorum M424]
gi|316913842|gb|EFV35327.1| GTP-binding protein YchF [Gemella morbillorum M424]
Length = 366
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/373 (56%), Positives = 275/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD----AEKAALEKIQQALM 230
DP D++VINLEL+ +DL+ +EKR+ +++K Q+K KD AE L K++ L
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEK------QAKQKDKDAVAEFGVLSKVRDILK 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ KPAR + L+ E+ K L LLTMKP++YVANV+E DL D +N HV V A++
Sbjct: 174 EEKPARLLELDKEEQKIAKNLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAANEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
S + + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E
Sbjct: 234 SQVIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM AP+ AG+IHSDFE+GFIRAETV+YDD + GS+ A+E G +R EGK+Y
Sbjct: 294 RAWTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLLEYGSMVKAKEAGRVRLEGKEYE 353
Query: 411 VQEGDVMLFRFNV 423
V++GD+MLFRFNV
Sbjct: 354 VKDGDIMLFRFNV 366
>gi|241888611|ref|ZP_04775918.1| GTP-binding protein YchF [Gemella haemolysans ATCC 10379]
gi|241864634|gb|EER69009.1| GTP-binding protein YchF [Gemella haemolysans ATCC 10379]
Length = 366
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/373 (57%), Positives = 275/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VP+ RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPEHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD----AEKAALEKIQQALM 230
DP D++VINLEL+ +DL+ +EKR+ +++K Q+K KD AE A L K++ L
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEK------QAKQKDKDAVAEFAVLAKVRDILK 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ KPAR + L+ E+ K L LLTMKP++YVANV+E DL D SN HV V A+
Sbjct: 174 EEKPARLLELDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDSNKHVASVREFAAGEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
S + + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E
Sbjct: 234 SQVIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G +R EGK+Y
Sbjct: 294 RAWTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRVRLEGKEYE 353
Query: 411 VQEGDVMLFRFNV 423
V++GD+MLFRFNV
Sbjct: 354 VKDGDIMLFRFNV 366
>gi|251799805|ref|YP_003014536.1| GTP-binding protein YchF [Paenibacillus sp. JDR-2]
gi|247547431|gb|ACT04450.1| GTP-binding protein YchF [Paenibacillus sp. JDR-2]
Length = 370
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/370 (57%), Positives = 281/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+AG+VGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL L+ L +
Sbjct: 5 MALKAGVVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVEVPDYRLDKLTELVQ 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EFVDIAGLV GAS+GEGLGNKFL+HIREVD+I+ VVRCFED +I HVNGKV
Sbjct: 64 PNKTVPTAFEFVDIAGLVAGASKGEGLGNKFLAHIREVDAIVHVVRCFEDENITHVNGKV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ INLEL+ +D++ +EK++E+ +K K D + L E LE++++AL + +
Sbjct: 124 DPLGDIQTINLELILADIESVEKKIERSRKNLKGGDKKIAL---EVEVLERVKEALYNDQ 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV L+D E+ I+ L LLTMKP++Y ANVAES++AD +N V V A+ +
Sbjct: 181 PARSVELSDDEKLVIRDLHLLTMKPVLYAANVAESEVADTDNNKFVQVVREFAAAEGAQV 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VE E+ EL E++ +L LG+ ESGL LI + Y LLGL TYFT+G +E +AW
Sbjct: 241 VPISAKVEEEIAELEGEDKAMFLEELGLQESGLNRLINAAYKLLGLYTYFTAGVQEVRAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR GM APQAAGVIH+DFE+GFIRAE V+++D AAG++ A+E+G LR EGK+Y+VQ+
Sbjct: 301 TIRKGMKAPQAAGVIHTDFERGFIRAEVVSFEDLAAAGTMNVAKERGQLRLEGKEYVVQD 360
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 361 GDVMHFRFNV 370
>gi|257885575|ref|ZP_05665228.1| translation-associated GTPase [Enterococcus faecium 1,231,501]
gi|257821431|gb|EEV48561.1| translation-associated GTPase [Enterococcus faecium 1,231,501]
Length = 366
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFATEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|422343627|ref|ZP_16424554.1| GTP-binding protein YchF [Selenomonas noxia F0398]
gi|355378043|gb|EHG25234.1| GTP-binding protein YchF [Selenomonas noxia F0398]
Length = 368
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 273/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDGRLKVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+++I EL +DL+ IEKRM K+ K S SK AE ALE+++ AL +GK A
Sbjct: 122 PLRDIEIIETELCLADLEAIEKRMAKVT--KLMKSGSKEAKAEHMALERLKSALDEGKSA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
R V L+ E+ +++ L LLT KPI+Y+ANVAE + A + N +V V A+ + V
Sbjct: 180 REVELSIEEQATLRDLNLLTRKPILYIANVAEDEAATADTENLYVQTVKKYAARTGAEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TISA++E E+ EL +EE +L LG +ESGL LI +SLLGL+T+ T+GE E +AWT
Sbjct: 240 TISARLEEEIAELDAEEVTAFLEDLGFAESGLDRLIHGAFSLLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V YDD V+ GS+AAAR+KGL+R EGKDYI+++G
Sbjct: 300 ITRGTTAPRAAGKIHTDFERGFIRAEIVNYDDLVSLGSVAAARDKGLVRLEGKDYIMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|329768073|ref|ZP_08259583.1| GTP-dependent nucleic acid-binding protein engD [Gemella
haemolysans M341]
gi|328838341|gb|EGF87951.1| GTP-dependent nucleic acid-binding protein engD [Gemella
haemolysans M341]
Length = 366
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 274/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD----AEKAALEKIQQALM 230
DP D++VINLEL+ +DL+ +EKR+ +++K Q+K KD AE A L K++ L
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEK------QAKQKDKDAVAEFAVLSKVRDILK 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ KPAR + + E+ K L LLTMKP++YVANV+E DL D +N HV V A+
Sbjct: 174 EEKPARLLEFDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAASEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
S + + A++E E+ L EE+ +L LG+ ESGL LI+++YSLLGL TYFT+G +E
Sbjct: 234 SQVIVVCAKIEEEMASLEDEEKAMFLEELGIDESGLDKLIKASYSLLGLATYFTAGVQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G +R EGK+Y
Sbjct: 294 RAWTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRVRLEGKEYE 353
Query: 411 VQEGDVMLFRFNV 423
V++GD+MLFRFNV
Sbjct: 354 VKDGDIMLFRFNV 366
>gi|326203524|ref|ZP_08193388.1| GTP-binding protein YchF [Clostridium papyrosolvens DSM 2782]
gi|325986344|gb|EGD47176.1| GTP-binding protein YchF [Clostridium papyrosolvens DSM 2782]
Length = 364
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 278/367 (75%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL +L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDMLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G + P
Sbjct: 60 KITPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
K D++ INLEL+FSDL+ IE+R+++ KK K K + E E ++ L GKP R
Sbjct: 120 KRDIETINLELIFSDLEMIERRIDRTKK-MLKSGDKKFQ-VEMELYESLKAHLESGKPVR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S++ + ++ + QL L+T+KP++Y ANV+E DL+ SN + E+ +A++ S + I
Sbjct: 178 SMSFDQEQQQLVDQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKEVAAEENSEVMVI 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G +E +AWTI
Sbjct: 238 CAKIEEEIAQLDDEEKADFLEAMGLEESGLDKLIKASYKILGLISYLTAGPQEVRAWTIT 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSDFE+GFIRAE VAYDD +++G+ + A+EKGL+RSEGK+Y++ +GDV
Sbjct: 298 KGTKAPQAAGKIHSDFERGFIRAEIVAYDDLISSGTYSVAKEKGLVRSEGKEYVMHDGDV 357
Query: 417 MLFRFNV 423
LFRFNV
Sbjct: 358 TLFRFNV 364
>gi|440732736|ref|ZP_20912541.1| GTP-binding protein YchF [Xanthomonas translucens DAR61454]
gi|440367506|gb|ELQ04567.1| GTP-binding protein YchF [Xanthomonas translucens DAR61454]
Length = 363
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/372 (57%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQTALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAATEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G LR EGKDY V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAGRLRLEGKDYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|227550625|ref|ZP_03980674.1| GTP-binding translation factor YchF [Enterococcus faecium TX1330]
gi|314940143|ref|ZP_07847323.1| GTP-binding protein YchF [Enterococcus faecium TX0133a04]
gi|314943026|ref|ZP_07849830.1| GTP-binding protein YchF [Enterococcus faecium TX0133C]
gi|314948144|ref|ZP_07851540.1| GTP-binding protein YchF [Enterococcus faecium TX0082]
gi|314953442|ref|ZP_07856360.1| GTP-binding protein YchF [Enterococcus faecium TX0133A]
gi|314993819|ref|ZP_07859155.1| GTP-binding protein YchF [Enterococcus faecium TX0133B]
gi|314998156|ref|ZP_07863038.1| GTP-binding protein YchF [Enterococcus faecium TX0133a01]
gi|424764514|ref|ZP_18191938.1| GTP-binding protein YchF [Enterococcus faecium TX1337RF]
gi|424793332|ref|ZP_18219457.1| GTP-binding protein YchF [Enterococcus faecium V689]
gi|424806856|ref|ZP_18232279.1| GTP-binding protein YchF [Enterococcus faecium S447]
gi|424819227|ref|ZP_18244353.1| GTP-binding protein YchF [Enterococcus faecium R501]
gi|424857944|ref|ZP_18282023.1| GTP-binding protein YchF [Enterococcus faecium R499]
gi|424907557|ref|ZP_18331036.1| GTP-binding protein YchF [Enterococcus faecium R497]
gi|424951468|ref|ZP_18366562.1| GTP-binding protein YchF [Enterococcus faecium R496]
gi|424953278|ref|ZP_18368251.1| GTP-binding protein YchF [Enterococcus faecium R494]
gi|424957776|ref|ZP_18372483.1| GTP-binding protein YchF [Enterococcus faecium R446]
gi|424962349|ref|ZP_18376711.1| GTP-binding protein YchF [Enterococcus faecium P1986]
gi|424963530|ref|ZP_18377740.1| GTP-binding protein YchF [Enterococcus faecium P1190]
gi|424967270|ref|ZP_18380977.1| GTP-binding protein YchF [Enterococcus faecium P1140]
gi|424975883|ref|ZP_18389010.1| GTP-binding protein YchF [Enterococcus faecium P1137]
gi|424981733|ref|ZP_18394443.1| GTP-binding protein YchF [Enterococcus faecium ERV99]
gi|424984800|ref|ZP_18397317.1| GTP-binding protein YchF [Enterococcus faecium ERV69]
gi|424989013|ref|ZP_18401302.1| GTP-binding protein YchF [Enterococcus faecium ERV38]
gi|424990997|ref|ZP_18403180.1| GTP-binding protein YchF [Enterococcus faecium ERV26]
gi|424996481|ref|ZP_18408284.1| GTP-binding protein YchF [Enterococcus faecium ERV168]
gi|424998996|ref|ZP_18410649.1| GTP-binding protein YchF [Enterococcus faecium ERV165]
gi|425002221|ref|ZP_18413669.1| GTP-binding protein YchF [Enterococcus faecium ERV161]
gi|425005651|ref|ZP_18416872.1| GTP-binding protein YchF [Enterococcus faecium ERV102]
gi|425008339|ref|ZP_18419425.1| GTP-binding protein YchF [Enterococcus faecium ERV1]
gi|425012497|ref|ZP_18423307.1| GTP-binding protein YchF [Enterococcus faecium E422]
gi|425013687|ref|ZP_18424406.1| GTP-binding protein YchF [Enterococcus faecium E417]
gi|425016691|ref|ZP_18427240.1| GTP-binding protein YchF [Enterococcus faecium C621]
gi|425020963|ref|ZP_18431248.1| GTP-binding protein YchF [Enterococcus faecium C497]
gi|425024282|ref|ZP_18434355.1| GTP-binding protein YchF [Enterococcus faecium C1904]
gi|425033629|ref|ZP_18438583.1| GTP-binding protein YchF [Enterococcus faecium 515]
gi|425034578|ref|ZP_18439461.1| GTP-binding protein YchF [Enterococcus faecium 514]
gi|425040412|ref|ZP_18444886.1| GTP-binding protein YchF [Enterococcus faecium 513]
gi|425040635|ref|ZP_18445090.1| GTP-binding protein YchF [Enterococcus faecium 511]
gi|425047055|ref|ZP_18451032.1| GTP-binding protein YchF [Enterococcus faecium 510]
gi|425050505|ref|ZP_18454243.1| GTP-binding protein YchF [Enterococcus faecium 509]
gi|425053367|ref|ZP_18456913.1| GTP-binding protein YchF [Enterococcus faecium 506]
gi|425054264|ref|ZP_18457776.1| GTP-binding protein YchF [Enterococcus faecium 505]
gi|425062480|ref|ZP_18465633.1| GTP-binding protein YchF [Enterococcus faecium 503]
gi|227180226|gb|EEI61198.1| GTP-binding translation factor YchF [Enterococcus faecium TX1330]
gi|313587868|gb|EFR66713.1| GTP-binding protein YchF [Enterococcus faecium TX0133a01]
gi|313591710|gb|EFR70555.1| GTP-binding protein YchF [Enterococcus faecium TX0133B]
gi|313594545|gb|EFR73390.1| GTP-binding protein YchF [Enterococcus faecium TX0133A]
gi|313598226|gb|EFR77071.1| GTP-binding protein YchF [Enterococcus faecium TX0133C]
gi|313640648|gb|EFS05228.1| GTP-binding protein YchF [Enterococcus faecium TX0133a04]
gi|313645398|gb|EFS09978.1| GTP-binding protein YchF [Enterococcus faecium TX0082]
gi|402419067|gb|EJV51349.1| GTP-binding protein YchF [Enterococcus faecium TX1337RF]
gi|402916450|gb|EJX37328.1| GTP-binding protein YchF [Enterococcus faecium V689]
gi|402918779|gb|EJX39441.1| GTP-binding protein YchF [Enterococcus faecium S447]
gi|402926527|gb|EJX46562.1| GTP-binding protein YchF [Enterococcus faecium R501]
gi|402927814|gb|EJX47743.1| GTP-binding protein YchF [Enterococcus faecium R499]
gi|402930087|gb|EJX49784.1| GTP-binding protein YchF [Enterococcus faecium R496]
gi|402930148|gb|EJX49839.1| GTP-binding protein YchF [Enterococcus faecium R497]
gi|402939436|gb|EJX58344.1| GTP-binding protein YchF [Enterococcus faecium R494]
gi|402941001|gb|EJX59763.1| GTP-binding protein YchF [Enterococcus faecium P1986]
gi|402942715|gb|EJX61280.1| GTP-binding protein YchF [Enterococcus faecium R446]
gi|402948824|gb|EJX66926.1| GTP-binding protein YchF [Enterococcus faecium P1190]
gi|402952356|gb|EJX70178.1| GTP-binding protein YchF [Enterococcus faecium P1137]
gi|402954796|gb|EJX72383.1| GTP-binding protein YchF [Enterococcus faecium P1140]
gi|402962629|gb|EJX79549.1| GTP-binding protein YchF [Enterococcus faecium ERV99]
gi|402967763|gb|EJX84289.1| GTP-binding protein YchF [Enterococcus faecium ERV69]
gi|402970166|gb|EJX86527.1| GTP-binding protein YchF [Enterococcus faecium ERV38]
gi|402973430|gb|EJX89557.1| GTP-binding protein YchF [Enterococcus faecium ERV168]
gi|402978121|gb|EJX93885.1| GTP-binding protein YchF [Enterococcus faecium ERV26]
gi|402981058|gb|EJX96612.1| GTP-binding protein YchF [Enterococcus faecium ERV165]
gi|402984005|gb|EJX99343.1| GTP-binding protein YchF [Enterococcus faecium ERV161]
gi|402985329|gb|EJY00546.1| GTP-binding protein YchF [Enterococcus faecium ERV102]
gi|402992823|gb|EJY07490.1| GTP-binding protein YchF [Enterococcus faecium ERV1]
gi|402992952|gb|EJY07605.1| GTP-binding protein YchF [Enterococcus faecium E422]
gi|403000500|gb|EJY14617.1| GTP-binding protein YchF [Enterococcus faecium E417]
gi|403006356|gb|EJY20007.1| GTP-binding protein YchF [Enterococcus faecium C621]
gi|403007230|gb|EJY20820.1| GTP-binding protein YchF [Enterococcus faecium C1904]
gi|403007964|gb|EJY21499.1| GTP-binding protein YchF [Enterococcus faecium C497]
gi|403009216|gb|EJY22679.1| GTP-binding protein YchF [Enterococcus faecium 515]
gi|403012997|gb|EJY26147.1| GTP-binding protein YchF [Enterococcus faecium 513]
gi|403020076|gb|EJY32636.1| GTP-binding protein YchF [Enterococcus faecium 514]
gi|403022556|gb|EJY34913.1| GTP-binding protein YchF [Enterococcus faecium 510]
gi|403023292|gb|EJY35565.1| GTP-binding protein YchF [Enterococcus faecium 509]
gi|403028079|gb|EJY39920.1| GTP-binding protein YchF [Enterococcus faecium 511]
gi|403030598|gb|EJY42275.1| GTP-binding protein YchF [Enterococcus faecium 506]
gi|403036311|gb|EJY47662.1| GTP-binding protein YchF [Enterococcus faecium 505]
gi|403038073|gb|EJY49311.1| GTP-binding protein YchF [Enterococcus faecium 503]
Length = 370
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 179
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 359
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 360 DGDVMLFRFNV 370
>gi|291541647|emb|CBL14757.1| GTP-binding protein YchF [Ruminococcus bromii L2-63]
Length = 364
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 280/368 (76%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G AQ+AN+PFCTIEPN+G+VAVPD RL L+ +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITDAG-AQSANYPFCTIEPNIGVVAVPDKRLDKLAEMYDPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PAS+EFVDIAGLVKGAS+GEGLGNKFLS+IRE D+I+ VVRCFE++DI+HV G ++P
Sbjct: 60 KYTPASIEFVDIAGLVKGASKGEGLGNKFLSNIRECDAIVHVVRCFENDDIIHVEGNINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+ SD++ +E+R++K KK D + + KD + E++ AL +GKPAR
Sbjct: 120 ARDIETINLELILSDVEMLERRIDKTKKMLKGDKKYQ-KDID--LFERVLAALNEGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRVT 295
SV +D E+ + ++ LLT KP+IY AN+++ D ++ SN V +A++ +G +
Sbjct: 177 SVECDDDEKAILSEVALLTNKPVIYAANMSDEDFSNGIDSNEGYKAVQKIAAEEHAGVLP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I AQ+E E+ E+ EE+ +LA +G+ ESGL LI+ Y+LLGL +Y T+G++E +AWTI
Sbjct: 237 ICAQIEEEIVEMDKEEKEMFLADMGLEESGLDRLIKECYALLGLISYLTAGKQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IHSDFE+GFIRAE +AYDD +A GS+ AA+EKGL+RSEGKDY++++GD
Sbjct: 297 KKGTKAPQAAGKIHSDFERGFIRAEVIAYDDLIACGSMTAAKEKGLVRSEGKDYVMKDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|69247500|ref|ZP_00604370.1| Conserved hypothetical protein 92 [Enterococcus faecium DO]
gi|257878634|ref|ZP_05658287.1| translation-associated GTPase [Enterococcus faecium 1,230,933]
gi|257881300|ref|ZP_05660953.1| translation-associated GTPase [Enterococcus faecium 1,231,502]
gi|257888109|ref|ZP_05667762.1| translation-associated GTPase [Enterococcus faecium 1,141,733]
gi|257890517|ref|ZP_05670170.1| translation-associated GTPase [Enterococcus faecium 1,231,410]
gi|257893093|ref|ZP_05672746.1| translation-associated GTPase [Enterococcus faecium 1,231,408]
gi|257896272|ref|ZP_05675925.1| translation-associated GTPase [Enterococcus faecium Com12]
gi|257899259|ref|ZP_05678912.1| translation-associated GTPase [Enterococcus faecium Com15]
gi|260558215|ref|ZP_05830411.1| translation-associated GTPase [Enterococcus faecium C68]
gi|293379353|ref|ZP_06625497.1| GTP-binding protein YchF [Enterococcus faecium PC4.1]
gi|293563239|ref|ZP_06677691.1| GTP-binding protein YchF [Enterococcus faecium E1162]
gi|293569171|ref|ZP_06680477.1| GTP-binding protein YchF [Enterococcus faecium E1071]
gi|293572706|ref|ZP_06683670.1| GTP-binding protein YchF [Enterococcus faecium E980]
gi|294619733|ref|ZP_06699138.1| GTP-binding protein YchF [Enterococcus faecium E1679]
gi|294623747|ref|ZP_06702575.1| GTP-binding protein YchF [Enterococcus faecium U0317]
gi|389869875|ref|YP_006377298.1| GTP-binding translation factor YchF [Enterococcus faecium DO]
gi|406580270|ref|ZP_11055484.1| GTP-binding protein YchF [Enterococcus sp. GMD4E]
gi|406582514|ref|ZP_11057633.1| GTP-binding protein YchF [Enterococcus sp. GMD3E]
gi|406584788|ref|ZP_11059807.1| GTP-binding protein YchF [Enterococcus sp. GMD2E]
gi|406589592|ref|ZP_11064023.1| GTP-binding protein YchF [Enterococcus sp. GMD1E]
gi|415892375|ref|ZP_11549912.1| GTP-binding protein YchF [Enterococcus faecium E4453]
gi|416143518|ref|ZP_11599792.1| GTP-binding protein YchF [Enterococcus faecium E4452]
gi|427396869|ref|ZP_18889495.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
durans FB129-CNAB-4]
gi|430831750|ref|ZP_19449798.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0333]
gi|430836307|ref|ZP_19454288.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0680]
gi|430842565|ref|ZP_19460478.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1007]
gi|430842985|ref|ZP_19460887.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1050]
gi|430848148|ref|ZP_19465975.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1133]
gi|430855842|ref|ZP_19473548.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1392]
gi|430861163|ref|ZP_19478752.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1573]
gi|430952205|ref|ZP_19486248.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1576]
gi|430998673|ref|ZP_19488056.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1578]
gi|431036299|ref|ZP_19492069.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1590]
gi|431081778|ref|ZP_19495868.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1604]
gi|431116715|ref|ZP_19497981.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1613]
gi|431235073|ref|ZP_19503096.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1622]
gi|431255542|ref|ZP_19504665.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1623]
gi|431303612|ref|ZP_19508459.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1626]
gi|431380574|ref|ZP_19510955.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1627]
gi|431437985|ref|ZP_19513148.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1630]
gi|431506958|ref|ZP_19515784.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1634]
gi|431545144|ref|ZP_19518785.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1731]
gi|431592424|ref|ZP_19521660.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1861]
gi|431726703|ref|ZP_19525454.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1904]
gi|431739140|ref|ZP_19528080.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1972]
gi|431740577|ref|ZP_19529489.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2039]
gi|431749496|ref|ZP_19538236.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2297]
gi|431753207|ref|ZP_19541884.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2620]
gi|431756035|ref|ZP_19544677.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2883]
gi|431758032|ref|ZP_19546661.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3083]
gi|431760014|ref|ZP_19548618.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3346]
gi|431763298|ref|ZP_19551851.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3548]
gi|431768144|ref|ZP_19556585.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1321]
gi|431769353|ref|ZP_19557763.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1644]
gi|431774643|ref|ZP_19562949.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2369]
gi|431777523|ref|ZP_19565776.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2560]
gi|431779796|ref|ZP_19567987.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4389]
gi|431782426|ref|ZP_19570559.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6012]
gi|431784247|ref|ZP_19572289.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6045]
gi|447913945|ref|YP_007395357.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecium NRRL B-2354]
gi|68194825|gb|EAN09300.1| Conserved hypothetical protein 92 [Enterococcus faecium DO]
gi|257812862|gb|EEV41620.1| translation-associated GTPase [Enterococcus faecium 1,230,933]
gi|257816958|gb|EEV44286.1| translation-associated GTPase [Enterococcus faecium 1,231,502]
gi|257824163|gb|EEV51095.1| translation-associated GTPase [Enterococcus faecium 1,141,733]
gi|257826877|gb|EEV53503.1| translation-associated GTPase [Enterococcus faecium 1,231,410]
gi|257829472|gb|EEV56079.1| translation-associated GTPase [Enterococcus faecium 1,231,408]
gi|257832837|gb|EEV59258.1| translation-associated GTPase [Enterococcus faecium Com12]
gi|257837171|gb|EEV62245.1| translation-associated GTPase [Enterococcus faecium Com15]
gi|260075389|gb|EEW63695.1| translation-associated GTPase [Enterococcus faecium C68]
gi|291588140|gb|EFF19982.1| GTP-binding protein YchF [Enterococcus faecium E1071]
gi|291594003|gb|EFF25472.1| GTP-binding protein YchF [Enterococcus faecium E1679]
gi|291596701|gb|EFF27924.1| GTP-binding protein YchF [Enterococcus faecium U0317]
gi|291604778|gb|EFF34260.1| GTP-binding protein YchF [Enterococcus faecium E1162]
gi|291607198|gb|EFF36556.1| GTP-binding protein YchF [Enterococcus faecium E980]
gi|292641876|gb|EFF60042.1| GTP-binding protein YchF [Enterococcus faecium PC4.1]
gi|364089237|gb|EHM31943.1| GTP-binding protein YchF [Enterococcus faecium E4452]
gi|364093363|gb|EHM35641.1| GTP-binding protein YchF [Enterococcus faecium E4453]
gi|388535124|gb|AFK60316.1| GTP-binding translation factor YchF [Enterococcus faecium DO]
gi|404454287|gb|EKA01238.1| GTP-binding protein YchF [Enterococcus sp. GMD4E]
gi|404457970|gb|EKA04442.1| GTP-binding protein YchF [Enterococcus sp. GMD3E]
gi|404463592|gb|EKA09203.1| GTP-binding protein YchF [Enterococcus sp. GMD2E]
gi|404470556|gb|EKA15177.1| GTP-binding protein YchF [Enterococcus sp. GMD1E]
gi|425722616|gb|EKU85510.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
durans FB129-CNAB-4]
gi|430480391|gb|ELA57565.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0333]
gi|430488434|gb|ELA65105.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0680]
gi|430492986|gb|ELA69322.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1007]
gi|430498039|gb|ELA74047.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1050]
gi|430535814|gb|ELA76211.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1133]
gi|430546384|gb|ELA86346.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1392]
gi|430550196|gb|ELA89993.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1573]
gi|430557340|gb|ELA96799.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1576]
gi|430562839|gb|ELB02070.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1590]
gi|430563334|gb|ELB02559.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1578]
gi|430565710|gb|ELB04856.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1604]
gi|430568495|gb|ELB07542.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1613]
gi|430572933|gb|ELB11769.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1622]
gi|430577740|gb|ELB16320.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1623]
gi|430580253|gb|ELB18733.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1626]
gi|430582442|gb|ELB20869.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1627]
gi|430586820|gb|ELB25062.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1630]
gi|430587345|gb|ELB25578.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1634]
gi|430592049|gb|ELB30076.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1861]
gi|430592192|gb|ELB30214.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1731]
gi|430595726|gb|ELB33609.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1904]
gi|430596683|gb|ELB34507.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1972]
gi|430602947|gb|ELB40491.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2039]
gi|430611493|gb|ELB48580.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2297]
gi|430612712|gb|ELB49747.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2620]
gi|430616150|gb|ELB53075.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2883]
gi|430618537|gb|ELB55384.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3083]
gi|430622992|gb|ELB59702.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3548]
gi|430625283|gb|ELB61923.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E3346]
gi|430629873|gb|ELB66261.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1321]
gi|430633853|gb|ELB70004.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2369]
gi|430636928|gb|ELB72972.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1644]
gi|430639137|gb|ELB75018.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2560]
gi|430641364|gb|ELB77173.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4389]
gi|430647063|gb|ELB82511.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6012]
gi|430649821|gb|ELB85188.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E6045]
gi|445189654|gb|AGE31296.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecium NRRL B-2354]
Length = 366
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|433462014|ref|ZP_20419609.1| GTP-binding protein YchF [Halobacillus sp. BAB-2008]
gi|432189350|gb|ELK46464.1| GTP-binding protein YchF [Halobacillus sp. BAB-2008]
Length = 365
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 284/371 (76%), Gaps = 8/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-ALSANYPFATIDPNVGIVEVPDERLDKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVR FED +I HV+G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRAFEDENITHVSGQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D++ INLEL+ +DL+ + KR++++ AK ++ K KDA E+A LE +++AL D
Sbjct: 120 DPITDIETINLELILADLETVTKRLDRV----AKLARQKDKDAVAEQAVLETLREALEDE 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR+V ++ +K L LLT KPI+YVANV+E ++ + G N V ++ A+ +
Sbjct: 176 TPARAVEFGTDQQKIVKGLHLLTAKPILYVANVSEEEIGE-GDNDKVKQIREFAAKENAE 234
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E+E+ EL +E+ E+L LG++ESGL LI++TY+LLGL TYFT+GE+E +A
Sbjct: 235 VIVVCAKIESEIAELDGDEKEEFLEDLGIAESGLDQLIKATYNLLGLATYFTAGEQEVRA 294
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GMTAPQAAG+IH+DFE+GFIRAETV+YDD + AGS+ AAR++G +R EGK+YIV+
Sbjct: 295 WTFKEGMTAPQAAGIIHTDFERGFIRAETVSYDDLMEAGSMGAARDRGRVRLEGKEYIVR 354
Query: 413 EGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 355 DGDVIHFRFNV 365
>gi|425057766|ref|ZP_18461169.1| GTP-binding protein YchF [Enterococcus faecium 504]
gi|403039875|gb|EJY50990.1| GTP-binding protein YchF [Enterococcus faecium 504]
Length = 370
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PN+G+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNIGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 179
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 359
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 360 DGDVMLFRFNV 370
>gi|296134463|ref|YP_003641710.1| GTP-binding protein YchF [Thermincola potens JR]
gi|296033041|gb|ADG83809.1| GTP-binding protein YchF [Thermincola potens JR]
Length = 364
Score = 425 bits (1092), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/367 (56%), Positives = 268/367 (73%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PFCTI+PNVG+V VPDPRL L+ + Q
Sbjct: 1 MQLGIVGLPNVGKSTLFNAITRAG-AEAANYPFCTIDPNVGVVEVPDPRLDKLAEMVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP +FVDIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCF D+++ HV G V P
Sbjct: 60 RVVPTVTQFVDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFRDDNVTHVEGSVGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ IN+EL+ +D++ +E+R+++ +K + K AE LE+I AL GKP R
Sbjct: 120 TRDIETINMELILADMETLERRLDRSRK--LLKTNDKKVAAEVELLERIHAALDAGKPIR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+ LN E IK LT KP++Y ANV E DL D NP+V EV +A+ S + +
Sbjct: 178 GLGLNPEEAAIIKDANFLTAKPVLYAANVGEEDLPDGKGNPYVEEVKRIAAAENSEVIVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++EAE+ EL +E+ E+LA LG+ ESGL LIR+ Y LLGL T+FT+G +E KAWTI+
Sbjct: 238 CAKIEAEIAELDDDEKAEFLADLGLEESGLDKLIRAGYRLLGLMTFFTAGPQEVKAWTIK 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSD E+GFIRAE V+YDD +AAGS AAREKGL+R EGKDY++Q+GDV
Sbjct: 298 QGTKAPQAAGKIHSDIERGFIRAEVVSYDDLMAAGSQLAAREKGLVRLEGKDYVMQDGDV 357
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 358 VYFRFNV 364
>gi|89897783|ref|YP_521270.1| GTP-dependent nucleic acid-binding protein EngD [Desulfitobacterium
hafniense Y51]
gi|219670932|ref|YP_002461367.1| GTP-dependent nucleic acid-binding protein EngD [Desulfitobacterium
hafniense DCB-2]
gi|423075919|ref|ZP_17064633.1| GTP-binding protein YchF [Desulfitobacterium hafniense DP7]
gi|89337231|dbj|BAE86826.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219541192|gb|ACL22931.1| GTP-binding protein YchF [Desulfitobacterium hafniense DCB-2]
gi|361853147|gb|EHL05333.1| GTP-binding protein YchF [Desulfitobacterium hafniense DP7]
Length = 366
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL VL+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVQVPDARLQVLAEMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+++ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAVVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+D+I LEL+ +D++ +EKR+E+ K S K E A L ++++ L G
Sbjct: 120 DPKRDIDIIQLELILADMESVEKRLER--SAKLLKSGDKKAQVEVALLNRLKETLDAGLA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ +D ER+ +K LL+MKP++Y ANV+E ++A P +NP+V +V +A+ S V
Sbjct: 178 ARSLEFSDEEREILKSFPLLSMKPVLYAANVSEEEIAQPDNNPYVRKVREIAAAENSEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++EAE+ EL EE+ +L LG++ESGL LIR+ + LLGL TYFT+G+ E +AW
Sbjct: 238 VVCAKIEAEIAELEEEEKKVFLEDLGLTESGLDRLIRAAFHLLGLMTYFTAGQIEVRAWE 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR GM APQAAGVIH+DFE+GFIRAE VAY DFV G L A+EKGL+R EGK+Y++ +G
Sbjct: 298 IRRGMKAPQAAGVIHTDFERGFIRAEVVAYKDFVENGGLNGAKEKGLVRLEGKEYVMNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIVHFRFNV 366
>gi|430823198|ref|ZP_19441770.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0120]
gi|430866231|ref|ZP_19481508.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1574]
gi|431743892|ref|ZP_19532765.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2071]
gi|430442296|gb|ELA52341.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0120]
gi|430551459|gb|ELA91210.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1574]
gi|430605955|gb|ELB43327.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2071]
Length = 366
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 281/371 (75%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEDLGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|293553535|ref|ZP_06674162.1| GTP-binding protein YchF [Enterococcus faecium E1039]
gi|430834935|ref|ZP_19452937.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0679]
gi|430839236|ref|ZP_19457177.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0688]
gi|430859070|ref|ZP_19476688.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1552]
gi|291602290|gb|EFF32515.1| GTP-binding protein YchF [Enterococcus faecium E1039]
gi|430485004|gb|ELA61951.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0679]
gi|430490694|gb|ELA67190.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0688]
gi|430544589|gb|ELA84618.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1552]
Length = 366
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PN+G+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNIGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|338810724|ref|ZP_08622964.1| GTP-binding protein YchF [Acetonema longum DSM 6540]
gi|337277305|gb|EGO65702.1| GTP-binding protein YchF [Acetonema longum DSM 6540]
Length = 364
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 273/367 (74%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+G+ K +
Sbjct: 1 MEIGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERLDKLAGMFKPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++ FVDIAGLVKGASQGEGLGNKFLSHIR+VD+I QVVRCF+D +I HV G +DP
Sbjct: 60 KVTPTAMRFVDIAGLVKGASQGEGLGNKFLSHIRQVDAIAQVVRCFQDENITHVEGGLDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++IN EL +D+D +EKR++K +K S K AE L ++++ L D +P R
Sbjct: 120 LRDIEIINTELCLADIDSVEKRLDKAQK--QTKSGDKKAQAEVELLNRVRKMLEDAQPVR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
V N+ E+ +K+L LLT KP+++VANV+E ++A P NP V V A+ ++G +T+
Sbjct: 178 RVEFNEEEQFILKELNLLTQKPVLFVANVSEEEIAGPDDNPLVQRVKQYAAREKAGVITV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E+E+ ELP +E +L LG++ESGL LI++ + LLGL T+ T+GE E +AWTI
Sbjct: 238 CAKLESEIAELPDDEAKAFLTDLGLTESGLDKLIKAGFYLLGLMTFLTAGEPEVRAWTIV 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IHSD E+GFIRAE V+YDD + +GS AAA+EKGL+R EGKDY++Q+GDV
Sbjct: 298 KGTKAPQAAGKIHSDIERGFIRAEIVSYDDLMRSGSQAAAKEKGLVRLEGKDYVMQDGDV 357
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 358 VYFRFNV 364
>gi|392988251|ref|YP_006486844.1| GTP-binding protein YchF [Enterococcus hirae ATCC 9790]
gi|392335671|gb|AFM69953.1| GTP-binding protein YchF [Enterococcus hirae ATCC 9790]
Length = 366
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESITKRYTRV----AKIAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+ ARS+ D E+ +K L LLT KPI+YVANVAE ++AD +N +V V N A++ +
Sbjct: 176 RSARSIEFTDEEQKIVKSLFLLTTKPILYVANVAEDEVADSDTNHYVQAVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|326804284|ref|YP_004322102.1| GTP-binding protein YchF [Aerococcus urinae ACS-120-V-Col10a]
gi|326651413|gb|AEA01596.1| GTP-binding protein YchF [Aerococcus urinae ACS-120-V-Col10a]
Length = 365
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 274/370 (74%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ ++ + +AAN+PF TI+PNVG+V VPD RL LS + +
Sbjct: 1 MPLTAGIVGLPNVGKSTLFNAITKS-QVEAANYPFATIDPNVGVVEVPDQRLWKLSEIYQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D +I HV+G +
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICHVVRCFDDGNITHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P+ D++ INLELV +DL+ + KR EK +K K+KD + E L+K+++AL GK
Sbjct: 120 NPQDDIETINLELVLADLESVNKRYEKAVKMAKSKDHDAV---TEANTLKKLKEALEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V N+ E KQL LLTMKP++YVANV+E D +D G N +V +V LA S
Sbjct: 177 PARTVDFNEEEEAVAKQLFLLTMKPVLYVANVSEDDASD-GDNDYVKQVRQLAQAEGSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA++E +L + E+R +L LG+ +SGL LI+ Y LLGL TYFT+GE+E +AW
Sbjct: 236 VVVSAKLEEDLATMDEEDRDMFLEDLGMDQSGLDVLIQQAYKLLGLATYFTAGEQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQAAG+IHSDFE+GFIRAETV YDD V GS+ A +E G RSEGKDY VQ+
Sbjct: 296 TFKKGMHAPQAAGIIHSDFERGFIRAETVHYDDLVEYGSIQACKEAGRYRSEGKDYEVQD 355
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 356 GDVMLFRFNV 365
>gi|383330170|ref|YP_005356054.1| translation-associated GTPase [Enterococcus faecium Aus0004]
gi|378939864|gb|AFC64936.1| translation-associated GTPase [Enterococcus faecium Aus0004]
Length = 433
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 68 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 126
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 127 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 186
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 187 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 242
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 243 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 302
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 303 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 362
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 363 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 422
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 423 DGDVMLFRFNV 433
>gi|288554590|ref|YP_003426525.1| GTP-binding protein YchF [Bacillus pseudofirmus OF4]
gi|288545750|gb|ADC49633.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
pseudofirmus OF4]
Length = 366
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 274/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQTLTDLVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIRQVDAISHVVRCFADDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P +D+ VINLEL+ +D + +EKR+ ++ K K +D ++ AE LE ++ A + K
Sbjct: 120 NPLNDIQVINLELILADFESVEKRIGRVAKLAKTRDKEAV---AELEVLELLRDAFEEEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ + + +KQL LLT KP++YVANV+E DL P N +V +V A+ S
Sbjct: 177 PARSIEFTEEQEKIVKQLHLLTSKPVLYVANVSEEDLLSPEDNDYVKQVKEFAAGENSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E+E+ EL +E+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +AW
Sbjct: 237 IVVCAKIESEIAELEGDEKQMFLEELGIEESGLDQLIRAAYNLLGLETYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R G APQAAG+IH+DFE+GFIRAE V+YDD V AGS+A A+E+G +R EGK+Y+VQ+
Sbjct: 297 TYRKGTKAPQAAGIIHTDFERGFIRAEVVSYDDLVDAGSMAVAKERGKVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVVHFRFNV 366
>gi|442770850|gb|AGC71553.1| GTP-binding/nucleic acid-binding protein YchF [uncultured bacterium
A1Q1_fos_517]
Length = 370
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 274/369 (74%), Gaps = 2/369 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ KA++AN+PFCTIEPNVGIV VPD RL ++ ++ +
Sbjct: 2 LRAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIEPNVGIVTVPDERLAPIAKVAGTP 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA++E VDIAGLVKGA+ GEGLGNKFL+HIR+VD+I+QVVRCFED++IVHV + P
Sbjct: 62 TLVPAAIELVDIAGLVKGAASGEGLGNKFLAHIRQVDAIVQVVRCFEDSNIVHVEAHLHP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
+D++ I EL+ +D++ + +++E+L++ K D+ +K A+ ++ L GKPA
Sbjct: 122 IADIETIQTELMLADMESLARQVERLERVAKGGDTSAKGAKAQIEIARRLLAHLEAGKPA 181
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGRV 294
++ + ER + LL+MKP +Y NVAE DLA +NP V EV +A+ + V
Sbjct: 182 LTLEMTADERAVAQPFFLLSMKPTLYACNVAEDDLATADTNPLVAEVRQWVATHHGAEAV 241
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SAQ+E+EL ELP EE EYLAS GV+ESG+G+LIRS Y LLGLRTYFT+GEKE +AWT
Sbjct: 242 TVSAQIESELAELPVEEATEYLASHGVAESGVGSLIRSIYHLLGLRTYFTAGEKEARAWT 301
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AG TAP+AA VIHSD +GFI+AET+A+D+FV G A ARE G +R EGK+Y V +G
Sbjct: 302 IHAGDTAPEAAAVIHSDLARGFIKAETIAWDEFVRVGGWARAREGGNVRQEGKEYTVADG 361
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 362 DVILFKFNV 370
>gi|339496804|ref|ZP_08657780.1| GTP-binding protein YchF [Leuconostoc pseudomesenteroides KCTC
3652]
Length = 366
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 271/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDERLASIQAIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D++ IN EL+ +DL+ ++KR K+ +A K AE A LEK++ AL G+
Sbjct: 120 NPLDDIETINTELILADLETVDKRYAKV--ARAAKGSDKAAKAEFAVLEKLKPALEAGQS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V ND E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ + +
Sbjct: 178 ARTVAFNDDEQKIVKGLFLLTTKPVLYVANLAEEDMADPESSKYFNEIKTFANSEGADVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ ELP +ER E+L GV E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEEIAELPDDERAEFLEMAGVDEPGLNKLIRAAYHLLDLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
RAG APQAAGVIHSDFE+GFIRAET+++DD A GS+ A +E G LRSEGK+Y+VQ+G
Sbjct: 298 FRAGAKAPQAAGVIHSDFERGFIRAETISFDDLDALGSVKAVKEAGKLRSEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|339624058|ref|ZP_08659847.1| GTP-binding protein YchF [Fructobacillus fructosus KCTC 3544]
Length = 366
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVGIV VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGIVEVPDKRLARIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+QK VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D++I+HVNGKV
Sbjct: 60 AQKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDEIIHVNGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN ELV +DL+ +EKR K+ +A K AE A LEKI+ L +GK
Sbjct: 120 DPLDDIATINTELVLADLEAVEKRYAKV--ARAAKGSDKTAKAEAAVLEKIKPVLEEGKA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ N+ E+ +K L LLT KP +YVAN+AE D+ADP ++P+ ++ A S +
Sbjct: 178 VRSIDFNEEEQAIVKGLFLLTSKPTLYVANIAEDDMADPENSPYYKQIKEFADSENSEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ +L +E+ +YL GVSE GL LIRS Y LL LRT+FT+GEKET+AWT
Sbjct: 238 ALSANAEEEIAQLDDDEKADYLELAGVSEPGLDKLIRSAYHLLDLRTFFTAGEKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+AG APQAAGVIHSDFE+GFIRAET ++DD GS A +E G LRSEGK+Y+VQ+G
Sbjct: 298 FKAGAKAPQAAGVIHSDFERGFIRAETFSFDDLDKYGSEKAVKEAGRLRSEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
D+M F FNV
Sbjct: 358 DIMEFLFNV 366
>gi|285017305|ref|YP_003375016.1| GTP-binding protein [Xanthomonas albilineans GPE PC73]
gi|283472523|emb|CBA15028.1| putative gtp-binding protein [Xanthomonas albilineans GPE PC73]
Length = 363
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGALAAIIH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I++EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPVSDIETIDIELALADLDSVEKALNRAERAAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH+ V A+ +
Sbjct: 175 GKPGRSAGLDEEEKTLVRDLFLLTLKPVMYIANVLEDGFEN---NPHLEAVRARAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 QVVPVSAAIEEELSQLDDADRDAFLVDLGLQEPGLNRVIRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAA VIH+DFEKGFIRAET+AYDDF+ A ARE G LR EGK+Y V
Sbjct: 292 AWTVKVGATAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAREAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|376260950|ref|YP_005147670.1| GTP-binding protein YchF [Clostridium sp. BNL1100]
gi|373944944|gb|AEY65865.1| GTP-binding protein YchF [Clostridium sp. BNL1100]
Length = 364
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL +L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDMLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G + P
Sbjct: 60 KITPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
K D++ INLEL+FSDL+ IE+R+++ KK K+ D + ++ E E I+ L G+P
Sbjct: 120 KRDIETINLELIFSDLEMIERRIDRTKKMLKSGDKKFQI---EMELYESIKAHLESGRPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RS++ + ++ + QL L+T+KP++Y ANV+E DL+ SN + E+ +A + S +
Sbjct: 177 RSMSFDQEQQQLVDQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKGVAVEENSEVMV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G +E +AWTI
Sbjct: 237 ICAKIEEEIAQLDDEEKADFLEAMGLEESGLDKLIKASYKILGLISYLTAGPQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IHSDFE+GFIRAE VAYDD ++ GS A+EKGL+RSEGK+Y++ +GD
Sbjct: 297 TNGTKAPQAAGKIHSDFERGFIRAEIVAYDDLISCGSYTVAKEKGLVRSEGKEYVMHDGD 356
Query: 416 VMLFRFNV 423
V LFRFNV
Sbjct: 357 VTLFRFNV 364
>gi|397905147|ref|ZP_10506018.1| GTP-binding and nucleic acid-binding protein YchF [Caloramator
australicus RC3]
gi|397161796|emb|CCJ33352.1| GTP-binding and nucleic acid-binding protein YchF [Caloramator
australicus RC3]
Length = 365
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/368 (56%), Positives = 274/368 (74%), Gaps = 4/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+ AN+PFCTIEPNVG+VAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AECANYPFCTIEPNVGVVAVPDERLEKLAEMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCFED++IVHV G +DP
Sbjct: 60 KVTPAVIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFEDSNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLELVFSD++ +E+RM+K KK A+ K +D E +EK+ L GKPAR
Sbjct: 120 IRDIETINLELVFSDMEVLERRMDKTKKS-ARSGDKKAQD-ELQFMEKLYTHLESGKPAR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ ++D E++ +KQ LLT KP++Y N++E DL N +V +V A + S V
Sbjct: 178 TLEMSDDEQEMLKQYFLLTSKPVLYACNISEDDLISGNVENQYVQKVKEYAKNEGSEVVV 237
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E E++ L EE++E+LAS G+ E GL LI+++Y LLGL ++ T+G KE +AWTI
Sbjct: 238 ICAKLEEEISTLEGEEKMEFLASYGLEEPGLNKLIKASYKLLGLISFLTAGPKEVRAWTI 297
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IHSD EKGFIRAE VAYDD + GS AAREKGL+R EGK+Y++Q+GD
Sbjct: 298 KEGTKAPQAAGKIHSDMEKGFIRAEVVAYDDLIKCGSEIAAREKGLIRLEGKEYVMQDGD 357
Query: 416 VMLFRFNV 423
+++FRFNV
Sbjct: 358 IVVFRFNV 365
>gi|430853349|ref|ZP_19471079.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1258]
gi|430541171|gb|ELA81348.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1258]
Length = 366
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFATEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGK+Y+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKEYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|182414910|ref|YP_001819976.1| GTP-binding protein YchF [Opitutus terrae PB90-1]
gi|177842124|gb|ACB76376.1| GTP-binding protein YchF [Opitutus terrae PB90-1]
Length = 367
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 271/369 (73%), Gaps = 5/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPD RL LS +SK+
Sbjct: 2 LKAGIVGLPNVGKSTLFNALTRSRKAEAANYPFCTIDPNVGVVTVPDDRLEPLSKISKTS 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
VPA++EFVDIAGLV GAS+GEGLGN+FL++IREVD+++QVVRCFED D+VH G +DP
Sbjct: 62 VTVPAAIEFVDIAGLVAGASKGEGLGNQFLANIREVDAVVQVVRCFEDPDVVHTMGGIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++VI ELV +DLD + KR+EK KK + D + AE A LEK+Q L GK A
Sbjct: 122 VRDIEVITTELVLADLDAVAKRIEKAQKKARGGDKEGI---AELALLEKLQPHLNAGKTA 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN-LASDLQSGRV 294
+ E +K LLT KP+++ NVAESDLA NP V +V + +A + V
Sbjct: 179 NLLPATPEETALMKLFQLLTAKPVLFACNVAESDLATAEQNPFVRKVADYVAHHHDAAYV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA++EAEL +LP +E +L LGV +SG+ +LIR+TY LLGL+TYFT+GEKE +AWT
Sbjct: 239 PISAKIEAELIDLPPDEAKAFLRDLGVEDSGVSSLIRATYDLLGLQTYFTAGEKEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAGVIH+DFE+GFI+AE V+Y D GS+AAARE G R EGKDY+ QEG
Sbjct: 299 IKKGWKAPQAAGVIHTDFERGFIKAEIVSYADLARLGSVAAAREAGKYRLEGKDYVFQEG 358
Query: 415 DVMLFRFNV 423
DV LFRFNV
Sbjct: 359 DVALFRFNV 367
>gi|118579184|ref|YP_900434.1| GTP-dependent nucleic acid-binding protein EngD [Pelobacter
propionicus DSM 2379]
gi|118501894|gb|ABK98376.1| GTP-binding protein YchF [Pelobacter propionicus DSM 2379]
Length = 364
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 273/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPDPR+ LS +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDPRMDQLSAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ P ++EFVDIAGLVKGAS GEGLGN+FL HIR VD+I+ VVRCF+D+++VHVNG+V
Sbjct: 60 PQRIQPTTIEFVDIAGLVKGASAGEGLGNQFLGHIRSVDAIIHVVRCFDDDNVVHVNGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P +D+D I+ EL SDL+ +EK++++ +K + KLKD E A ++++ L GK
Sbjct: 120 SPAADIDTIHTELGLSDLETVEKKLQRAEKA-GRSGDRKLKD-EAAFYQRVRDLLDQGKN 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V N+ ER ++ L LLT KP++YVANVAE DL G +P V +V +AS +G V
Sbjct: 178 VRGVAENEDERLWLRDLHLLTDKPVLYVANVAEDDLG--GEHPFVGQVQQIASLEGAGVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI ++EAE++EL EE+ +L +G++E+GL LIRS Y LLGL TYFT+G KE +AWT
Sbjct: 236 TICGKLEAEISELEGEEKQAFLNDMGLAEAGLDRLIRSGYELLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIHSDFEKGFIRAE +A+DDF+A A A+EKGL+R EGK+Y+V++G
Sbjct: 296 ITRGTKAPQAAGVIHSDFEKGFIRAEVIAFDDFIACNGEAGAKEKGLMRLEGKEYVVRDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|320352448|ref|YP_004193787.1| GTP-binding protein YchF [Desulfobulbus propionicus DSM 2032]
gi|320120950|gb|ADW16496.1| GTP-binding protein YchF [Desulfobulbus propionicus DSM 2032]
Length = 365
Score = 424 bits (1089), Expect = e-116, Method: Compositional matrix adjust.
Identities = 215/370 (58%), Positives = 274/370 (74%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ A N+PFCTIEPNVGIV VPD RL L+ L K
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAA-AIAAENYPFCTIEPNVGIVPVPDARLDQLAELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V +EFVDIAGLVKGASQGEGLGN+FL HIR+VD+IL VVRCFED++IVHV+G +
Sbjct: 60 TRNKVATQMEFVDIAGLVKGASQGEGLGNQFLGHIRQVDAILHVVRCFEDDNIVHVDGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP DV+VI EL+ +DL+ +EKR+ K + +AK +L AE A LE++Q L GKP
Sbjct: 120 DPLRDVEVITTELILADLETVEKRLAK-SRNQAKSGDKRLL-AEAAFLERLQATLDQGKP 177
Query: 235 ARSV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR+V ND +RD ++ LCLLT KP++YVANV E DLA N HV ++ +A++ +
Sbjct: 178 ARTVFPDNDQQRDLVRDLCLLTTKPVLYVANVDEGDLAT--GNRHVEQLGKVAAEEGASM 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I+ +E EL+ L EE+ E+LA +G+ E GL LI++ Y+LLGL T+FT GEKETKAW
Sbjct: 236 VMIAGAIEQELSLLDREEQREFLAEMGMEEPGLHRLIKAGYALLGLITFFTVGEKETKAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G AP AAG IHSDFE+GFIRAE +AYDD++A GS AR+KGL+RSEGK+Y+V +
Sbjct: 296 TIKKGTKAPGAAGKIHSDFERGFIRAEVIAYDDYIACGSETVARDKGLMRSEGKEYVVAD 355
Query: 414 GDVMLFRFNV 423
GD +LFRFNV
Sbjct: 356 GDCILFRFNV 365
>gi|329769232|ref|ZP_08260651.1| GTP-dependent nucleic acid-binding protein engD [Gemella sanguinis
M325]
gi|328839363|gb|EGF88943.1| GTP-dependent nucleic acid-binding protein engD [Gemella sanguinis
M325]
Length = 366
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/373 (56%), Positives = 274/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP S EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVRCFED +I HV G V
Sbjct: 60 PKKTVPTSFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRCFEDENITHVAGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD----AEKAALEKIQQALM 230
DP D++VINLEL+ +DL+ +EKR+ +++K Q+K KD AE L K++ L
Sbjct: 120 DPLYDIEVINLELILADLESVEKRIGRVEK------QAKQKDKDAVAEFGVLSKVRDILK 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ KPAR + L+ E+ K L LLTMKP++YVANV+E DL D +N HV V A+
Sbjct: 174 EEKPARLLELDKEEQKIAKGLHLLTMKPMLYVANVSEDDLLDVDANKHVASVREFAASEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
S + + A++E E+ L EE+ +L LG+ ESGL LI+++Y+LLGL TYFT+G +E
Sbjct: 234 SKVIVVCAKIEEEMAALEDEEKAMFLEELGIDESGLDKLIKASYNLLGLATYFTAGVQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM AP+ AG+IHSDFE+GFIRAETV+YDD V GS+ A+E G +R EGK+Y
Sbjct: 294 RAWTFKKGMLAPECAGIIHSDFERGFIRAETVSYDDLVEYGSMPKAKEAGRVRLEGKEYE 353
Query: 411 VQEGDVMLFRFNV 423
V++GD+MLFRFNV
Sbjct: 354 VKDGDIMLFRFNV 366
>gi|431795390|ref|YP_007222295.1| GTP-binding protein YchF [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785616|gb|AGA70899.1| GTP-binding protein YchF [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 366
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD R+ VL+G+ K
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGIVQVPDSRMQVLAGMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV G V
Sbjct: 60 PDKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+D I LELV +DL+ +EKR+E+ K S K E A L ++++ L +G+
Sbjct: 120 DPKRDIDTIQLELVLADLESVEKRLER--SAKLLKSGEKKAQLEVALLNRLKEVLDEGQA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ +D E + +K LL+MKP++Y ANV+E D+A P N +V +V +A+ S V
Sbjct: 178 ARSLDFSDEELELLKSFPLLSMKPVLYAANVSEEDIAHPDDNAYVQKVREIAAFENSEVV 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++EAE++EL EE+ +L LG+ +SGL LIR+ + LLGL TYFT+G+ E +AW
Sbjct: 238 VVCAKIEAEISELEEEEKKAFLEDLGLVDSGLDRLIRAAFHLLGLMTYFTAGQIEVRAWE 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G APQAAGVIH+DFE+GFIRAE VAY DFV G L+ A+EKGL+R EGK+Y++ +G
Sbjct: 298 IRQGTKAPQAAGVIHTDFERGFIRAEVVAYKDFVEHGGLSGAKEKGLVRLEGKEYVMNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIVHFRFNV 366
>gi|311032238|ref|ZP_07710328.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus sp.
m3-13]
Length = 366
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVDVPDERLQKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PKKTVPTHFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADDNITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P +D++ INLEL+ +DL+ ++KR+E++ K K KD ++ E L +++AL +
Sbjct: 120 NPINDIETINLELILADLESVDKRLERVAKLAKQKDKEAVY---EHEVLVLVKEALENEL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V + D + +K + LLT KP++YVANV E D+AD N +V +V A +
Sbjct: 177 PARTVEVTDEQVKYLKGMHLLTSKPVLYVANVGEDDVADTSDNEYVQQVREFAEKDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E+E+ EL ++E+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +AW
Sbjct: 237 ITVCAKIESEIVELDADEKAMFLEELGIKESGLDQLIRAAYNLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R+GM APQ AGVIH+DFE+GFIRAETV+Y+D +AAGS AA+E G +R EGK+YIV++
Sbjct: 297 TFRSGMKAPQCAGVIHTDFERGFIRAETVSYEDLLAAGSHTAAKEAGKVRLEGKEYIVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|392530428|ref|ZP_10277565.1| GTP-binding protein YchF [Carnobacterium maltaromaticum ATCC 35586]
gi|414085728|ref|YP_006994442.1| GTPase [Carnobacterium maltaromaticum LMA28]
gi|412999318|emb|CCO13127.1| GTPase of unknown function family protein [Carnobacterium
maltaromaticum LMA28]
Length = 366
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 272/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGMVEVPDYRLARLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF+D +I HV+G++
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFDDENITHVDGRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++ INLELV +DL+ +EKR ++ GK ++ K AE A LEKI+ L +GK
Sbjct: 120 DPIADIETINLELVLADLESVEKRHARV--GKLARTKDKDALAEFAVLEKIKPVLEEGKS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR++ N+ E +K L LLT+KP++YVANV+E ++ D N +V +V A+ SG
Sbjct: 178 ARTIEFNEEEAKIVKSLFLLTIKPVLYVANVSEDEIGDAEENEYVKQVREFAATENSGVN 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E+ EL +E+ E+L LG+ ESGL LIRS Y LLGL TYFT+G +E +AWT
Sbjct: 238 VICARIEEEIAELDDDEKAEFLTELGIKESGLDQLIRSAYDLLGLATYFTAGVQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
G+ APQAAG+IHSDFE GFIRAETV++ D ++AAA+E G +R EGK+YIVQ+G
Sbjct: 298 FVKGIKAPQAAGIIHSDFEHGFIRAETVSFADLDKYENMAAAKEAGRVRLEGKEYIVQDG 357
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 358 DVMLFRFNV 366
>gi|422707558|ref|ZP_16765251.1| GTP-binding protein YchF [Enterococcus faecalis TX0043]
gi|315155037|gb|EFT99053.1| GTP-binding protein YchF [Enterococcus faecalis TX0043]
Length = 371
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/375 (55%), Positives = 277/375 (73%), Gaps = 10/375 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQAL 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+ L
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVTKMAKAKDKEAV---EELAVLDKIKPVL 176
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V +V N A+
Sbjct: 177 EEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSE 236
Query: 290 QSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE+
Sbjct: 237 NAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQ 296
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G +R EGKD
Sbjct: 297 EVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKD 356
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDVMLFRFNV
Sbjct: 357 YVVQDGDVMLFRFNV 371
>gi|289449885|ref|YP_003475171.1| GTP-binding protein YchF [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289184432|gb|ADC90857.1| GTP-binding protein YchF [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 364
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 276/370 (74%), Gaps = 9/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL L+ + K +
Sbjct: 1 MQLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVPVPDQRLDFLAEMYKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +E VDIAGLV GAS+GEGLGNKFLSHIR+VD+I+ VVRCF+D +++HVNG D
Sbjct: 60 KYTPAVLELVDIAGLVAGASRGEGLGNKFLSHIRQVDAIIHVVRCFDDPNVIHVNGSADA 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
K D++ I+LEL+ +DL+ +E+R++K+KK G K Q++L+ L +I++AL GK
Sbjct: 120 KRDIETISLELILADLEYLERRIDKVKKSMKGGDKKPQAQLE-----VLLRIKEALDAGK 174
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+D E++ I L LL+ KPI+YVANV+E DLA P N V +A Q+
Sbjct: 175 SARSVELSDEEKEEITDLELLSAKPILYVANVSEDDLAAPEKNNQFLAVQQIARAEQAAC 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E EL L EER +L LG+ ESGL +++S YSLL L +Y T+G KE +AW
Sbjct: 235 IAISAKIEEELASLDDEERAMFLQDLGIVESGLDQIVKSGYSLLNLISYLTAGPKEVRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IHSDFE+GFIRAE VAYDD A GS+AA +EKGL+RSEGKDY++++
Sbjct: 295 TIIRGTKAPQAAGKIHSDFERGFIRAEVVAYDDLHALGSMAACKEKGLVRSEGKDYVMKD 354
Query: 414 GDVMLFRFNV 423
GD++LFRFNV
Sbjct: 355 GDIVLFRFNV 364
>gi|29377737|ref|NP_816891.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis V583]
gi|227518148|ref|ZP_03948197.1| GTP-binding translation factor YchF [Enterococcus faecalis TX0104]
gi|227555646|ref|ZP_03985693.1| GTP-binding translation factor YchF [Enterococcus faecalis HH22]
gi|229547168|ref|ZP_04435893.1| GTP-binding translation factor YchF [Enterococcus faecalis TX1322]
gi|229550738|ref|ZP_04439463.1| GTP-binding translation factor YchF [Enterococcus faecalis ATCC
29200]
gi|255971513|ref|ZP_05422099.1| translation-associated GTPase [Enterococcus faecalis T1]
gi|255974463|ref|ZP_05425049.1| translation-associated GTPase [Enterococcus faecalis T2]
gi|256618564|ref|ZP_05475410.1| translation-associated GTPase [Enterococcus faecalis ATCC 4200]
gi|256761818|ref|ZP_05502398.1| translation-associated GTPase [Enterococcus faecalis T3]
gi|256854945|ref|ZP_05560306.1| translation-associated GTPase [Enterococcus faecalis T8]
gi|256957052|ref|ZP_05561223.1| translation-associated GTPase [Enterococcus faecalis DS5]
gi|256960916|ref|ZP_05565087.1| translation-associated GTPase [Enterococcus faecalis Merz96]
gi|257078729|ref|ZP_05573090.1| translation-associated GTPase [Enterococcus faecalis JH1]
gi|257081311|ref|ZP_05575672.1| translation-associated GTPase [Enterococcus faecalis E1Sol]
gi|257083969|ref|ZP_05578330.1| translation-associated GTPase [Enterococcus faecalis Fly1]
gi|257087799|ref|ZP_05582160.1| translation-associated GTPase [Enterococcus faecalis D6]
gi|257088444|ref|ZP_05582805.1| translation-associated GTPase [Enterococcus faecalis CH188]
gi|257417386|ref|ZP_05594380.1| translation-associated GTPase [Enterococcus faecalis ARO1/DG]
gi|257418877|ref|ZP_05595871.1| translation-associated GTPase [Enterococcus faecalis T11]
gi|257421308|ref|ZP_05598298.1| translation-associated GTPase [Enterococcus faecalis X98]
gi|293384811|ref|ZP_06630656.1| GTP-binding protein YchF [Enterococcus faecalis R712]
gi|293388233|ref|ZP_06632752.1| GTP-binding protein YchF [Enterococcus faecalis S613]
gi|294781212|ref|ZP_06746559.1| GTP-binding protein YchF [Enterococcus faecalis PC1.1]
gi|300861458|ref|ZP_07107542.1| GTP-binding protein YchF [Enterococcus faecalis TUSoD Ef11]
gi|307268875|ref|ZP_07550240.1| GTP-binding protein YchF [Enterococcus faecalis TX4248]
gi|307277349|ref|ZP_07558447.1| GTP-binding protein YchF [Enterococcus faecalis TX2134]
gi|307283999|ref|ZP_07564169.1| GTP-binding protein YchF [Enterococcus faecalis TX0860]
gi|307286505|ref|ZP_07566604.1| GTP-binding protein YchF [Enterococcus faecalis TX0109]
gi|307289978|ref|ZP_07569904.1| GTP-binding protein YchF [Enterococcus faecalis TX0411]
gi|312901338|ref|ZP_07760619.1| GTP-binding protein YchF [Enterococcus faecalis TX0470]
gi|312902985|ref|ZP_07762174.1| GTP-binding protein YchF [Enterococcus faecalis TX0635]
gi|312908853|ref|ZP_07767792.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 512]
gi|312952971|ref|ZP_07771827.1| GTP-binding protein YchF [Enterococcus faecalis TX0102]
gi|312979504|ref|ZP_07791186.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 516]
gi|384514505|ref|YP_005709598.1| GTP-binding protein YchF [Enterococcus faecalis OG1RF]
gi|384517070|ref|YP_005704375.1| GTP-dependent nucleic acid-binding protein engD-like protein
[Enterococcus faecalis 62]
gi|397701416|ref|YP_006539204.1| GTP-dependent nucleic acid-binding protein engD- like protein
[Enterococcus faecalis D32]
gi|421513538|ref|ZP_15960304.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecalis ATCC 29212]
gi|422685188|ref|ZP_16743412.1| GTP-binding protein YchF [Enterococcus faecalis TX4000]
gi|422687189|ref|ZP_16745374.1| GTP-binding protein YchF [Enterococcus faecalis TX0630]
gi|422691524|ref|ZP_16749559.1| GTP-binding protein YchF [Enterococcus faecalis TX0031]
gi|422694272|ref|ZP_16752265.1| GTP-binding protein YchF [Enterococcus faecalis TX4244]
gi|422697345|ref|ZP_16755290.1| GTP-binding protein YchF [Enterococcus faecalis TX1346]
gi|422699437|ref|ZP_16757302.1| GTP-binding protein YchF [Enterococcus faecalis TX1342]
gi|422702863|ref|ZP_16760692.1| GTP-binding protein YchF [Enterococcus faecalis TX1302]
gi|422709180|ref|ZP_16766692.1| GTP-binding protein YchF [Enterococcus faecalis TX0027]
gi|422712077|ref|ZP_16768855.1| GTP-binding protein YchF [Enterococcus faecalis TX0309A]
gi|422715536|ref|ZP_16772254.1| GTP-binding protein YchF [Enterococcus faecalis TX0309B]
gi|422719236|ref|ZP_16775884.1| GTP-binding protein YchF [Enterococcus faecalis TX0017]
gi|422723364|ref|ZP_16779902.1| GTP-binding protein YchF [Enterococcus faecalis TX2137]
gi|422726316|ref|ZP_16782764.1| GTP-binding protein YchF [Enterococcus faecalis TX0312]
gi|422728145|ref|ZP_16784563.1| GTP-binding protein YchF [Enterococcus faecalis TX0012]
gi|422730504|ref|ZP_16786893.1| GTP-binding protein YchF [Enterococcus faecalis TX0645]
gi|422734781|ref|ZP_16791064.1| GTP-binding protein YchF [Enterococcus faecalis TX1341]
gi|422741744|ref|ZP_16795767.1| GTP-binding protein YchF [Enterococcus faecalis TX2141]
gi|422867819|ref|ZP_16914387.1| GTP-binding protein YchF [Enterococcus faecalis TX1467]
gi|424672363|ref|ZP_18109330.1| GTP-binding protein YchF [Enterococcus faecalis 599]
gi|424678198|ref|ZP_18115040.1| GTP-binding protein YchF [Enterococcus faecalis ERV103]
gi|424680493|ref|ZP_18117299.1| GTP-binding protein YchF [Enterococcus faecalis ERV116]
gi|424682380|ref|ZP_18119152.1| GTP-binding protein YchF [Enterococcus faecalis ERV129]
gi|424685974|ref|ZP_18122649.1| GTP-binding protein YchF [Enterococcus faecalis ERV25]
gi|424689077|ref|ZP_18125670.1| GTP-binding protein YchF [Enterococcus faecalis ERV31]
gi|424693592|ref|ZP_18130021.1| GTP-binding protein YchF [Enterococcus faecalis ERV37]
gi|424697998|ref|ZP_18134307.1| GTP-binding protein YchF [Enterococcus faecalis ERV41]
gi|424699961|ref|ZP_18136169.1| GTP-binding protein YchF [Enterococcus faecalis ERV62]
gi|424702884|ref|ZP_18139025.1| GTP-binding protein YchF [Enterococcus faecalis ERV63]
gi|424707462|ref|ZP_18143445.1| GTP-binding protein YchF [Enterococcus faecalis ERV65]
gi|424716010|ref|ZP_18145329.1| GTP-binding protein YchF [Enterococcus faecalis ERV68]
gi|424720210|ref|ZP_18149320.1| GTP-binding protein YchF [Enterococcus faecalis ERV72]
gi|424723347|ref|ZP_18152337.1| GTP-binding protein YchF [Enterococcus faecalis ERV73]
gi|424727229|ref|ZP_18155863.1| GTP-binding protein YchF [Enterococcus faecalis ERV81]
gi|424741540|ref|ZP_18169887.1| GTP-binding protein YchF [Enterococcus faecalis ERV85]
gi|424749377|ref|ZP_18177483.1| GTP-binding protein YchF [Enterococcus faecalis ERV93]
gi|424756243|ref|ZP_18184073.1| GTP-binding protein YchF [Enterococcus faecalis R508]
gi|428768378|ref|YP_007154489.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis str.
Symbioflor 1]
gi|430362713|ref|ZP_19427190.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis OG1X]
gi|430372465|ref|ZP_19429809.1| hypothetical protein EFM7_2596 [Enterococcus faecalis M7]
gi|29345205|gb|AAO82961.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis V583]
gi|227074416|gb|EEI12379.1| GTP-binding translation factor YchF [Enterococcus faecalis TX0104]
gi|227175223|gb|EEI56195.1| GTP-binding translation factor YchF [Enterococcus faecalis HH22]
gi|229304171|gb|EEN70167.1| GTP-binding translation factor YchF [Enterococcus faecalis ATCC
29200]
gi|229307750|gb|EEN73737.1| GTP-binding translation factor YchF [Enterococcus faecalis TX1322]
gi|255962531|gb|EET95007.1| translation-associated GTPase [Enterococcus faecalis T1]
gi|255967335|gb|EET97957.1| translation-associated GTPase [Enterococcus faecalis T2]
gi|256598091|gb|EEU17267.1| translation-associated GTPase [Enterococcus faecalis ATCC 4200]
gi|256683069|gb|EEU22764.1| translation-associated GTPase [Enterococcus faecalis T3]
gi|256709458|gb|EEU24505.1| translation-associated GTPase [Enterococcus faecalis T8]
gi|256947548|gb|EEU64180.1| translation-associated GTPase [Enterococcus faecalis DS5]
gi|256951412|gb|EEU68044.1| translation-associated GTPase [Enterococcus faecalis Merz96]
gi|256986759|gb|EEU74061.1| translation-associated GTPase [Enterococcus faecalis JH1]
gi|256989341|gb|EEU76643.1| translation-associated GTPase [Enterococcus faecalis E1Sol]
gi|256991999|gb|EEU79301.1| translation-associated GTPase [Enterococcus faecalis Fly1]
gi|256995829|gb|EEU83131.1| translation-associated GTPase [Enterococcus faecalis D6]
gi|256997256|gb|EEU83776.1| translation-associated GTPase [Enterococcus faecalis CH188]
gi|257159214|gb|EEU89174.1| translation-associated GTPase [Enterococcus faecalis ARO1/DG]
gi|257160705|gb|EEU90665.1| translation-associated GTPase [Enterococcus faecalis T11]
gi|257163132|gb|EEU93092.1| translation-associated GTPase [Enterococcus faecalis X98]
gi|291077893|gb|EFE15257.1| GTP-binding protein YchF [Enterococcus faecalis R712]
gi|291082380|gb|EFE19343.1| GTP-binding protein YchF [Enterococcus faecalis S613]
gi|294451675|gb|EFG20130.1| GTP-binding protein YchF [Enterococcus faecalis PC1.1]
gi|295112313|emb|CBL30950.1| GTP-binding protein YchF [Enterococcus sp. 7L76]
gi|300848919|gb|EFK76672.1| GTP-binding protein YchF [Enterococcus faecalis TUSoD Ef11]
gi|306498972|gb|EFM68464.1| GTP-binding protein YchF [Enterococcus faecalis TX0411]
gi|306502378|gb|EFM71655.1| GTP-binding protein YchF [Enterococcus faecalis TX0109]
gi|306503370|gb|EFM72619.1| GTP-binding protein YchF [Enterococcus faecalis TX0860]
gi|306505983|gb|EFM75155.1| GTP-binding protein YchF [Enterococcus faecalis TX2134]
gi|306514791|gb|EFM83341.1| GTP-binding protein YchF [Enterococcus faecalis TX4248]
gi|310625291|gb|EFQ08574.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 512]
gi|310629112|gb|EFQ12395.1| GTP-binding protein YchF [Enterococcus faecalis TX0102]
gi|310633653|gb|EFQ16936.1| GTP-binding protein YchF [Enterococcus faecalis TX0635]
gi|311287686|gb|EFQ66242.1| GTP-binding protein YchF [Enterococcus faecalis DAPTO 516]
gi|311291571|gb|EFQ70127.1| GTP-binding protein YchF [Enterococcus faecalis TX0470]
gi|315026608|gb|EFT38540.1| GTP-binding protein YchF [Enterococcus faecalis TX2137]
gi|315030102|gb|EFT42034.1| GTP-binding protein YchF [Enterococcus faecalis TX4000]
gi|315033595|gb|EFT45527.1| GTP-binding protein YchF [Enterococcus faecalis TX0017]
gi|315036260|gb|EFT48192.1| GTP-binding protein YchF [Enterococcus faecalis TX0027]
gi|315143574|gb|EFT87590.1| GTP-binding protein YchF [Enterococcus faecalis TX2141]
gi|315148287|gb|EFT92303.1| GTP-binding protein YchF [Enterococcus faecalis TX4244]
gi|315151252|gb|EFT95268.1| GTP-binding protein YchF [Enterococcus faecalis TX0012]
gi|315153737|gb|EFT97753.1| GTP-binding protein YchF [Enterococcus faecalis TX0031]
gi|315158674|gb|EFU02691.1| GTP-binding protein YchF [Enterococcus faecalis TX0312]
gi|315163397|gb|EFU07414.1| GTP-binding protein YchF [Enterococcus faecalis TX0645]
gi|315165664|gb|EFU09681.1| GTP-binding protein YchF [Enterococcus faecalis TX1302]
gi|315168470|gb|EFU12487.1| GTP-binding protein YchF [Enterococcus faecalis TX1341]
gi|315172088|gb|EFU16105.1| GTP-binding protein YchF [Enterococcus faecalis TX1342]
gi|315174221|gb|EFU18238.1| GTP-binding protein YchF [Enterococcus faecalis TX1346]
gi|315576183|gb|EFU88374.1| GTP-binding protein YchF [Enterococcus faecalis TX0309B]
gi|315579762|gb|EFU91953.1| GTP-binding protein YchF [Enterococcus faecalis TX0630]
gi|315582994|gb|EFU95185.1| GTP-binding protein YchF [Enterococcus faecalis TX0309A]
gi|323479203|gb|ADX78642.1| GTP-dependent nucleic acid-binding protein engD-like protein
[Enterococcus faecalis 62]
gi|327536394|gb|AEA95228.1| GTP-binding protein YchF [Enterococcus faecalis OG1RF]
gi|329577031|gb|EGG58506.1| GTP-binding protein YchF [Enterococcus faecalis TX1467]
gi|397338055|gb|AFO45727.1| GTP-dependent nucleic acid-binding protein engD- like protein
[Enterococcus faecalis D32]
gi|401673359|gb|EJS79751.1| GTP-binding and nucleic acid-binding protein YchF [Enterococcus
faecalis ATCC 29212]
gi|402351967|gb|EJU86834.1| GTP-binding protein YchF [Enterococcus faecalis ERV103]
gi|402354275|gb|EJU89087.1| GTP-binding protein YchF [Enterococcus faecalis ERV116]
gi|402356017|gb|EJU90762.1| GTP-binding protein YchF [Enterococcus faecalis 599]
gi|402367900|gb|EJV02235.1| GTP-binding protein YchF [Enterococcus faecalis ERV129]
gi|402368152|gb|EJV02474.1| GTP-binding protein YchF [Enterococcus faecalis ERV25]
gi|402369383|gb|EJV03664.1| GTP-binding protein YchF [Enterococcus faecalis ERV31]
gi|402373774|gb|EJV07832.1| GTP-binding protein YchF [Enterococcus faecalis ERV37]
gi|402374093|gb|EJV08137.1| GTP-binding protein YchF [Enterococcus faecalis ERV41]
gi|402375134|gb|EJV09130.1| GTP-binding protein YchF [Enterococcus faecalis ERV62]
gi|402384648|gb|EJV18192.1| GTP-binding protein YchF [Enterococcus faecalis ERV65]
gi|402386010|gb|EJV19525.1| GTP-binding protein YchF [Enterococcus faecalis ERV63]
gi|402389021|gb|EJV22437.1| GTP-binding protein YchF [Enterococcus faecalis ERV68]
gi|402393962|gb|EJV27165.1| GTP-binding protein YchF [Enterococcus faecalis ERV72]
gi|402397287|gb|EJV30314.1| GTP-binding protein YchF [Enterococcus faecalis ERV81]
gi|402398754|gb|EJV31677.1| GTP-binding protein YchF [Enterococcus faecalis ERV73]
gi|402401340|gb|EJV34118.1| GTP-binding protein YchF [Enterococcus faecalis ERV85]
gi|402407876|gb|EJV40375.1| GTP-binding protein YchF [Enterococcus faecalis ERV93]
gi|402408533|gb|EJV40994.1| GTP-binding protein YchF [Enterococcus faecalis R508]
gi|427186551|emb|CCO73775.1| GTP-binding protein, GTP1/OBG family [Enterococcus faecalis str.
Symbioflor 1]
gi|429511984|gb|ELA01604.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
faecalis OG1X]
gi|429514642|gb|ELA04180.1| hypothetical protein EFM7_2596 [Enterococcus faecalis M7]
Length = 371
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/375 (55%), Positives = 277/375 (73%), Gaps = 10/375 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQAL 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+ L
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAV---EELAVLDKIKPVL 176
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V +V N A+
Sbjct: 177 EEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQVRNFATSE 236
Query: 290 QSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE+
Sbjct: 237 NAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQ 296
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G +R EGKD
Sbjct: 297 EVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKD 356
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDVMLFRFNV
Sbjct: 357 YVVQDGDVMLFRFNV 371
>gi|430826517|ref|ZP_19444699.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0164]
gi|430828696|ref|ZP_19446813.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0269]
gi|431213212|ref|ZP_19501077.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1620]
gi|431747309|ref|ZP_19536107.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2134]
gi|431764831|ref|ZP_19553359.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4215]
gi|430445030|gb|ELA54820.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0164]
gi|430483236|gb|ELA60330.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0269]
gi|430570465|gb|ELB09425.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1620]
gi|430606677|gb|ELB44022.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E2134]
gi|430629919|gb|ELB66301.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E4215]
Length = 366
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|407796886|ref|ZP_11143837.1| GTP-binding protein YchF [Salimicrobium sp. MJ3]
gi|407018784|gb|EKE31505.1| GTP-binding protein YchF [Salimicrobium sp. MJ3]
Length = 365
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 280/370 (75%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AVSANYPFATIDPNVGIVEVPDARLQKLTALVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVR FED+++ HV+G+V
Sbjct: 60 PKKTTPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAICHVVRAFEDDEVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ I KR+++++K + KD ++ AEK L ++++AL +
Sbjct: 120 DPISDIETINLELILADLETINKRLDRVEKMARQKDKEAL---AEKDVLTRLKEALESEQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ L+ E K L LLT KPI+YVANVAE ++ + N +V + A +
Sbjct: 177 PARALELSKEEEKYRKGLHLLTAKPILYVANVAEDEIGE-AENENVKRIREFAKKEDAEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+TI A++E+E+ EL EER E+L LG++E+GL LI++TY+LLGL TYFT+GE+E +AW
Sbjct: 236 ITICAKIESEIAELEGEERAEFLEDLGIAEAGLDQLIKATYNLLGLATYFTAGEEEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GMTAPQAAG+IH+DFEKGFI+AETV+Y+D + GS+A A+E G +R EGK+YIV++
Sbjct: 296 TFRKGMTAPQAAGIIHTDFEKGFIKAETVSYEDLIEGGSMAKAKENGKVRLEGKEYIVKD 355
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 356 GDVIHFRFNV 365
>gi|326692155|ref|ZP_08229160.1| GTP-binding protein YchF [Leuconostoc argentinum KCTC 3773]
Length = 366
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D+D IN EL+ +DL+ +EKR K+ +A Q K AE A LEKI+ L GK
Sbjct: 120 NPLDDIDTINTELILADLETVEKRYAKV--ARAAKGQDKDAKAEFAVLEKIKPVLEAGKS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+T ND E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ + +
Sbjct: 178 VRSITFNDDEQKIVKGLFLLTTKPVLYVANLAEDDMADPESSKYFNEIKAFAASEGADVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEEIAQLADEDKAEFLEMAGVTEPGLNKLIRAAYHLLDLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+AGM APQ AGVIHSDFE+GFIRAET+A+DD A GS+ A +E G LRSEGK+Y+V +G
Sbjct: 298 FKAGMKAPQTAGVIHSDFERGFIRAETIAFDDLDALGSVKAVKEAGKLRSEGKEYVVNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|289667605|ref|ZP_06488680.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. musacearum NCPPB 4381]
Length = 363
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALTEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|164686384|ref|ZP_02210414.1| hypothetical protein CLOBAR_02822 [Clostridium bartlettii DSM
16795]
gi|164601986|gb|EDQ95451.1| GTP-binding protein YchF [Clostridium bartlettii DSM 16795]
Length = 365
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 277/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL+VL L+ ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVAVPDERLNVLKELNNAK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED+++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D INLEL+ SD++ +++R+ +K KA S L E L I L + K R
Sbjct: 120 IRDIDTINLELILSDIEILDRRI--VKTTKALKSDKSLA-GELEMLNAIAATLAESKSVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
++ + E++ + L LLT KP+IY ANV+E DLAD G+ N +V V A+ + V
Sbjct: 177 TMDFTEEEQEFVNSLNLLTSKPVIYAANVSEDDLADEGANNEYVARVREFAASENAEVVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+YSLLGL ++ T+GE+E +AWT
Sbjct: 237 VCAQIEAEISELESDEEKKEFLETLGLEQSGLDKLIQSSYSLLGLMSFLTAGEQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSD E+GFIRAE V YDD V GS+A AREKGL+R EGKDY++Q G
Sbjct: 297 IKVGTKAPQAAGKIHSDIERGFIRAEIVNYDDLVECGSVANAREKGLVRLEGKDYVMQNG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|254446691|ref|ZP_05060166.1| GTP-binding protein YchF [Verrucomicrobiae bacterium DG1235]
gi|198256116|gb|EDY80425.1| GTP-binding protein YchF [Verrucomicrobiae bacterium DG1235]
Length = 380
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 213/383 (55%), Positives = 284/383 (74%), Gaps = 7/383 (1%)
Query: 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV 101
SS +F+ S ++ L+AGIVGLPNVGKSTLFNA+ KA++AN+PFCTI+PNVG+V V
Sbjct: 2 SSNNQFNGLS--ALMLKAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIDPNVGVVNV 59
Query: 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161
PD RL VL ++ + +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I+QVVRC
Sbjct: 60 PDARLQVLQEIAGTNVVIPAAIEFVDIAGLVAGASKGEGLGNKFLANIRETDAIVQVVRC 119
Query: 162 FEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKA 220
FE++DIVH G VDP D++VIN EL+ SDL+ +E++ EKL KK ++ D ++ A
Sbjct: 120 FENDDIVHSMGDVDPIRDIEVINTELILSDLESVERQKEKLVKKVRSGDKEAA---ATVE 176
Query: 221 ALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVN 280
+E++ +GKPA ++ ++ E++ ++ L LL+ K +IY ANV E DLAD SNP V
Sbjct: 177 LIERLLPHFNEGKPANTLEMSKEEQEILRGLHLLSSKAVIYAANVMEDDLADAESNPFVT 236
Query: 281 EVMNLASDLQ-SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGL 339
+V + A +G V ISAQ+E+EL +LP EE E+LA LGV +SG+ LIR TYSLLGL
Sbjct: 237 KVRDYAKTAHDAGCVVISAQIESELIDLPPEEAGEFLADLGVEDSGVSLLIRETYSLLGL 296
Query: 340 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREK 399
+TYFT+GEKE +AWT GMTAPQ AGVIH+DFEKGFI+AE V+Y D + GS++AAR+
Sbjct: 297 KTYFTAGEKEVRAWTFEDGMTAPQCAGVIHTDFEKGFIKAEIVSYLDLSSLGSVSAARDA 356
Query: 400 GLLRSEGKDYIVQEGDVMLFRFN 422
G R EGK+Y ++GDV LFRFN
Sbjct: 357 GKYRLEGKEYHFKDGDVALFRFN 379
>gi|256963946|ref|ZP_05568117.1| translation-associated GTPase [Enterococcus faecalis HIP11704]
gi|307273950|ref|ZP_07555160.1| GTP-binding protein YchF [Enterococcus faecalis TX0855]
gi|256954442|gb|EEU71074.1| translation-associated GTPase [Enterococcus faecalis HIP11704]
gi|306509258|gb|EFM78318.1| GTP-binding protein YchF [Enterococcus faecalis TX0855]
Length = 371
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/375 (55%), Positives = 277/375 (73%), Gaps = 10/375 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D +I+ +
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDENIMREQNRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQAL 229
VDP +D+D INLEL+ +DLD I KR ++ K KAKD ++ E A L+KI+ L
Sbjct: 120 ADFVDPLADIDTINLELILADLDSINKRYTRVAKMAKAKDKEAV---EELAVLDKIKPVL 176
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+G AR++ E +K L LLT KP++YVANV+E ++ADP +N +V ++ N A+
Sbjct: 177 EEGLSARTIEFTPEEEKIVKSLFLLTTKPVLYVANVSEDEVADPDNNEYVQQIRNFATSE 236
Query: 290 QSGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ + +SA+ E E+ EL SEE + E+L ++G+ +SGL LIR+ Y LLGL TYFT+GE+
Sbjct: 237 NAEVIVVSARAEEEIAELDSEEDKAEFLEAMGIEQSGLDQLIRAAYDLLGLATYFTAGEQ 296
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
E +AWT R G+ APQAAG+IHSDFE+GFIRAETV+Y+D G++ AA+E G +R EGKD
Sbjct: 297 EVRAWTFRKGIKAPQAAGIIHSDFERGFIRAETVSYEDLDKYGNMQAAKEAGRVRLEGKD 356
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDVMLFRFNV
Sbjct: 357 YVVQDGDVMLFRFNV 371
>gi|404497694|ref|YP_006721800.1| GTP-binding protein YchF [Geobacter metallireducens GS-15]
gi|418067968|ref|ZP_12705294.1| GTP-binding protein YchF [Geobacter metallireducens RCH3]
gi|78195296|gb|ABB33063.1| GTP-dependent translational factor YchF, putative [Geobacter
metallireducens GS-15]
gi|373557862|gb|EHP84242.1| GTP-binding protein YchF [Geobacter metallireducens RCH3]
Length = 364
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 273/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERLERLAEIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCF+D ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFDDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++VI EL +DLD +EK+ ++++K +AK KLKD E +++ AL G P
Sbjct: 120 DPIRDIEVIQTELALADLDSVEKKFQRVEK-QAKGGDRKLKD-ESEFYARVKGALEKGTP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V + D ER ++ L LLT KP++YVANVAE DL G++P V +V +LA + V
Sbjct: 178 GRHVEVGDDERLWMRDLHLLTDKPVLYVANVAEDDL--EGAHPFVAKVRDLAESEGARVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I ++E+E+ EL +E+ +LA +G++ESGL LIR Y LLGL TYFT+G+KE +AWT
Sbjct: 236 VICGRIESEIAELDGDEKKVFLAEMGLAESGLDRLIRMGYDLLGLITYFTAGKKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AG APQAAGVIHSDFEKGFIRAE +AY DFVAAG A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 IPAGTKAPQAAGVIHSDFEKGFIRAEVIAYRDFVAAGGETGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|380510763|ref|ZP_09854170.1| GTP-binding protein YchF [Xanthomonas sacchari NCPPB 4393]
Length = 363
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNALAAIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHGDIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL +
Sbjct: 120 DPVSDIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKAGRNAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+SE GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDAFLADLGLSEPGLNRVIRAGYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+AYDDF+ A A+E G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYDDFIKYKGEAGAKEAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|335049086|ref|ZP_08542097.1| GTP-binding protein YchF [Megasphaera sp. UPII 199-6]
gi|333764531|gb|EGL41925.1| GTP-binding protein YchF [Megasphaera sp. UPII 199-6]
Length = 368
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDARLRTLTNM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDDNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D+D+IN EL +DL+ +++R+++L K + D +K AE A L+KI AL
Sbjct: 120 SVDPLRDIDIINTELCLADLETVQRRVDRLAKIAQCGDKAAK---AELAVLQKILTALEA 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+P R V L D E+ ++K+L LLT+KPI+Y+ANVAE + A P +NP V ++ A+ +
Sbjct: 177 GEPVRKVALQDEEKQTVKELNLLTIKPILYIANVAEDEAAQPDANPLVQKLTAFAAAEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA++EAE+ ELP +E +L LG+SESGL LI++ YSLLGL +FT+G E +
Sbjct: 237 QVVAVSAKIEAEIAELPDDEAAAFLEELGLSESGLTKLIKAGYSLLGLINFFTAGADEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G A +AAG IH+D E+GFIRAE V+Y D +A G AA+EKGL+R EGK+Y++
Sbjct: 297 AWTIVKGTKAQKAAGKIHTDIERGFIRAEIVSYTDLIACGGEQAAKEKGLVRLEGKEYLM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV FRFNV
Sbjct: 357 QDGDVTYFRFNV 368
>gi|146296726|ref|YP_001180497.1| GTP-binding protein YchF [Caldicellulosiruptor saccharolyticus DSM
8903]
gi|145410302|gb|ABP67306.1| GTP-binding protein YchF [Caldicellulosiruptor saccharolyticus DSM
8903]
Length = 362
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/368 (57%), Positives = 274/368 (74%), Gaps = 7/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLEVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D++IVHV G VDP
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDSEIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
K D++ INLEL+F+DL+ +E+R+EK +K AK+S+ + E LEKI L G+ AR
Sbjct: 120 KRDIETINLELIFADLEVLERRLEKTRK-LAKNSKEAAHELE--ILEKIYSTLESGRMAR 176
Query: 237 SVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
++ +D E + L LLT KP IY AN++E D+ N +V V +A+ S +
Sbjct: 177 TLKFDDEEDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVNEIAAQEGSEVIV 234
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AWTI
Sbjct: 235 ICAKLEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAWTI 294
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IHSDFE+GFIRAE V +D V G A A+EKGL+RSEGKDY++Q+GD
Sbjct: 295 KKGTKAPQAAGKIHSDFERGFIRAEVVPFDVLVECGGFAQAKEKGLVRSEGKDYVMQDGD 354
Query: 416 VMLFRFNV 423
V++FRFNV
Sbjct: 355 VVIFRFNV 362
>gi|430888493|ref|ZP_19484366.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1575]
gi|430556009|gb|ELA95532.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1575]
Length = 366
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKVG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|290969065|ref|ZP_06560600.1| GTP-binding protein YchF [Megasphaera genomosp. type_1 str. 28L]
gi|290781021|gb|EFD93614.1| GTP-binding protein YchF [Megasphaera genomosp. type_1 str. 28L]
Length = 368
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 274/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDTRLRTLTDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDDNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D+D+IN EL +DL+ +++R+++L K + D +K AE A L+KI AL
Sbjct: 120 SVDPLRDIDIINTELCLADLETVQRRVDRLAKIAQCGDKAAK---AELAVLQKILTALEA 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+P R V L D E+ ++K+L LLT+KPI+Y+ANVAE + A P +NP V ++ A+ +
Sbjct: 177 GEPVRKVALQDEEKQTVKELNLLTIKPILYIANVAEDEAAQPDANPLVQKLTAFAAAEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA++EAE+ ELP +E +L LG+SESGL LI++ YSLLGL +FT+G E +
Sbjct: 237 QVVAVSAKIEAEIAELPDDEAAAFLEELGLSESGLTKLIKAGYSLLGLINFFTAGADEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G A +AAG IH+D E+GFIRAE V+Y D +A G AA+EKGL+R EGK+Y++
Sbjct: 297 AWTIVKGTKAQKAAGKIHTDIERGFIRAEIVSYTDLIACGGEQAAKEKGLVRLEGKEYLM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV FRFNV
Sbjct: 357 QDGDVTYFRFNV 368
>gi|430820761|ref|ZP_19439383.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0045]
gi|430439147|gb|ELA49519.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E0045]
Length = 366
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAILDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|261206905|ref|ZP_05921594.1| translation-associated GTPase [Enterococcus faecium TC 6]
gi|289567296|ref|ZP_06447675.1| GTP-binding protein YchF [Enterococcus faecium D344SRF]
gi|294616671|ref|ZP_06696442.1| GTP-binding protein YchF [Enterococcus faecium E1636]
gi|430850622|ref|ZP_19468379.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1185]
gi|260078533|gb|EEW66235.1| translation-associated GTPase [Enterococcus faecium TC 6]
gi|289160915|gb|EFD08836.1| GTP-binding protein YchF [Enterococcus faecium D344SRF]
gi|291590491|gb|EFF22229.1| GTP-binding protein YchF [Enterococcus faecium E1636]
gi|430534981|gb|ELA75404.1| GTP-dependent nucleic acid-binding protein engD [Enterococcus
faecium E1185]
Length = 366
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPN+GKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNIGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 176 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+G++E +A
Sbjct: 236 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGKQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|78046539|ref|YP_362714.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. vesicatoria str. 85-10]
gi|346723863|ref|YP_004850532.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citrumelo F1]
gi|78034969|emb|CAJ22614.1| GTP-binding protein [Xanthomonas campestris pv. vesicatoria str.
85-10]
gi|346648610|gb|AEO41234.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citrumelo F1]
Length = 363
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAVEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|289663464|ref|ZP_06485045.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. vasculorum NCPPB 702]
Length = 363
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALIEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|325928011|ref|ZP_08189229.1| GTP-binding protein YchF [Xanthomonas perforans 91-118]
gi|325541625|gb|EGD13149.1| GTP-binding protein YchF [Xanthomonas perforans 91-118]
Length = 383
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 21 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 79
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 80 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 139
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 140 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 194
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 195 GKAGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAVEGA 251
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 252 EVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 311
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 312 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 371
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 372 QEGDVLHFRFNV 383
>gi|257866238|ref|ZP_05645891.1| translation-associated GTPase [Enterococcus casseliflavus EC30]
gi|257873248|ref|ZP_05652901.1| translation-associated GTPase [Enterococcus casseliflavus EC10]
gi|257875873|ref|ZP_05655526.1| translation-associated GTPase [Enterococcus casseliflavus EC20]
gi|325567662|ref|ZP_08144329.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
casseliflavus ATCC 12755]
gi|420261817|ref|ZP_14764461.1| translation-associated GTPase [Enterococcus sp. C1]
gi|257800196|gb|EEV29224.1| translation-associated GTPase [Enterococcus casseliflavus EC30]
gi|257807412|gb|EEV36234.1| translation-associated GTPase [Enterococcus casseliflavus EC10]
gi|257810039|gb|EEV38859.1| translation-associated GTPase [Enterococcus casseliflavus EC20]
gi|325159095|gb|EGC71241.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
casseliflavus ATCC 12755]
gi|394771751|gb|EJF51512.1| translation-associated GTPase [Enterococcus sp. C1]
Length = 366
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 282/371 (76%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D+D INLELV +DL+ + KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 120 DPLADIDTINLELVLADLESVNKRYTRV----AKIAKTKDKDAVAELAVLDKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ D E+ +K L LLT KP++YVANVAE D+AD +N +VN+V A+ +
Sbjct: 176 ISARSIEFTDEEQRIVKSLFLLTTKPVLYVANVAEEDVADYETNDYVNKVKEFAASENAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ ISA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VIVISARAEEEIAELEEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT R G+ APQAAG+IH+DFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 296 WTFRKGIKAPQAAGIIHTDFERGFIRAETVSFEDLNQYGTMQAAKEAGRVRLEGKDYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|323487701|ref|ZP_08092959.1| GTP-dependent nucleic acid-binding protein EngD [Planococcus
donghaensis MPA1U2]
gi|323398435|gb|EGA91223.1| GTP-dependent nucleic acid-binding protein EngD [Planococcus
donghaensis MPA1U2]
Length = 366
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 281/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++VINLEL+ +D++ IEKR+ KL K K KD+ AE+ L K+++A +
Sbjct: 120 DPISDIEVINLELILADMESIEKRITRAAKLIKQKDKDAV-----AEEPVLMKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+ ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V V + A+ +
Sbjct: 175 GQLARSIEFTEDELKIAKGLNLLTIKPMLYVANVSEDEIADADNNEYVQTVRDFAAKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E+ EL EE+ +L LG+ ESGL L++++YSLLGL TYFT+G +E +
Sbjct: 235 DVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDLLVKASYSLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETVAYDD V GS+AAA+E G +R EGK+YIV
Sbjct: 295 AWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDDLVEIGSMAAAKEAGKVRQEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVMLFRFNV
Sbjct: 355 KDGDVMLFRFNV 366
>gi|193215391|ref|YP_001996590.1| GTP-dependent nucleic acid-binding protein EngD [Chloroherpeton
thalassium ATCC 35110]
gi|193088868|gb|ACF14143.1| GTP-binding protein YchF [Chloroherpeton thalassium ATCC 35110]
Length = 363
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ + A N+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAQ-QVDAQNYPFCTIEPNVGTVAVPDPRLKPLSQITK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED++I HV+G +
Sbjct: 60 TKTIIPATLELVDIAGLVRGASKGEGLGNQFLSHIREVDAIIHVVRCFEDSNITHVDGDI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
PK D+D I EL+ +DLD +EKR+EKLKK D K A EK+ + L DGKP
Sbjct: 120 SPKRDIDTIETELMLADLDSLEKRLEKLKKNARAD---KSLQPNVALCEKLIECLGDGKP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V D E++ +K L++ KP++Y NV+E D+ + N EV +A+ + V
Sbjct: 177 ARTVVETDEEKEILKSFFLISAKPVLYAVNVSEDDMGE--GNQWTKEVEEVAAKEGAKVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI A VE+E+ +LP EER E+L SLG+ SGL LI++ Y LLGL TYFT+GEKE AWT
Sbjct: 235 TICASVESEIAQLPEEERPEFLESLGLEMSGLDRLIQAGYDLLGLHTYFTAGEKEVHAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+R G AP+AAGVIHSDFEKGFIRAE + Y+D GS +E G L EGK+Y+V +G
Sbjct: 295 VRKGAKAPEAAGVIHSDFEKGFIRAEVIKYEDMAKFGSEQKVKEAGKLMVEGKEYVVCDG 354
Query: 415 DVMLFRFNV 423
D+M FRFNV
Sbjct: 355 DIMHFRFNV 363
>gi|89094727|ref|ZP_01167662.1| GTP-binding protein [Neptuniibacter caesariensis]
gi|89080981|gb|EAR60218.1| GTP-binding protein [Oceanospirillum sp. MED92]
Length = 363
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ +NG A A NFPFCTIEPN G VA+PDPRL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKNGIA-AENFPFCTIEPNAGTVAMPDPRLDNLAAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV K+
Sbjct: 60 PERVVPTAMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ INLEL +DLD EK R++KL KG K++ A+KA LE++ L +
Sbjct: 120 DPLSDIETINLELALADLDSAEKQLQRIQKLAKGGDKEAV-----AQKAMLERLIPYLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP R + LND E +K LLT+KP +Y+ANV E D NPH+++V LA+ +
Sbjct: 175 GKPVRGMGLNDDEMKIVKGFHLLTVKPTMYIANVDEDGFED---NPHLDQVKELAASENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V + ++EAE++EL EER E+LA LG+ E GL +IR+ Y LLGL+TYFT+G +E +
Sbjct: 232 GVVVVCNKLEAEISELDDEERDEFLADLGMEEPGLDRVIRAGYELLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE V+YDDFV A++ G R EGKDYIV
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVSYDDFVEHNGENGAKDAGRWRLEGKDYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 352 QDGDVVHFRFNV 363
>gi|404493643|ref|YP_006717749.1| GTP-binding protein YchF [Pelobacter carbinolicus DSM 2380]
gi|77545679|gb|ABA89241.1| GTP-dependent translational factor YchF, putative [Pelobacter
carbinolicus DSM 2380]
Length = 364
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 274/369 (74%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ G A++AN+PFCTIEPNVG+V+VPDPRL VL+ + +
Sbjct: 1 MGFKCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIEPNVGVVSVPDPRLDVLADIVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV+GASQGEGLGN+FL HIR+VD+I +VRCF+D+++VHV+G V
Sbjct: 60 PQRVLPTTIEFVDIAGLVRGASQGEGLGNQFLGHIRQVDAIANIVRCFDDDNVVHVDGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++VI EL +DLD +EKR+ +++K + L A++ L ++++ L GKP
Sbjct: 120 DPMRDIEVIQTELNLADLDTVEKRLFRIQKQAKSGDKDML--AQQEVLLRVREVLDAGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS L+ ++ I L L+T KP++YVANVAE DL G +PHV V A++ + V
Sbjct: 178 ARSAGLSYEDQRLISDLHLITAKPVLYVANVAEDDL--EGEHPHVARVREYAAEEGAEVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I ++E+E+ EL +E+ E+L LG+ SGL +I++ Y LLGL TYFT+G +E +AWT
Sbjct: 236 AICGKIESEIAELEGDEKQEFLQELGLGSSGLDRMIQAGYQLLGLITYFTAGVQEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ G APQAAGVIH+DFEKGFIRAE +AYDDFVA + A+EKGLLR EGKDY+VQ+G
Sbjct: 296 VHKGDRAPQAAGVIHTDFEKGFIRAEVIAYDDFVACRGESGAKEKGLLRLEGKDYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|374296933|ref|YP_005047124.1| GTP-binding protein YchF [Clostridium clariflavum DSM 19732]
gi|359826427|gb|AEV69200.1| GTP-binding protein YchF [Clostridium clariflavum DSM 19732]
Length = 364
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/368 (55%), Positives = 276/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVGIVAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGIVAVPDERLDKLAEMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV+G + P
Sbjct: 60 KVTPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVSGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
DV+ I +EL+ +D++ ++KR++K KK K+ D + ++ E E+IQ+ L +GKPA
Sbjct: 120 VRDVETIEMELILADIEVMDKRIDKTKKMLKSGDKKYQI---ELELYERIQKTLSEGKPA 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RS+ + E+ + QL LLT KP++Y ANV E L DP +NP V E+ A S +
Sbjct: 177 RSMKFDPEEQKMVDQLFLLTSKPVLYAANVDEDGLRDPSNNPLVQEITEHAKKEGSEVMV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E E+ +L +E+ E+L LG++ESGL L++++Y LLGL ++ T+G +E +AWTI
Sbjct: 237 ICAKIEEEIAQLDDDEKAEFLKELGLTESGLDRLVKASYKLLGLISFLTAGPQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IHSDFE+GFIRAE V++DD +A GS AA+EKGL+RSEGK+Y++Q+GD
Sbjct: 297 VKGTKAPQAAGKIHSDFERGFIRAEIVSFDDLMACGSYNAAKEKGLVRSEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V LFRFNV
Sbjct: 357 VTLFRFNV 364
>gi|456013141|gb|EMF46810.1| GTP-binding and nucleic acid-binding protein YchF [Planococcus
halocryophilus Or1]
Length = 366
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/372 (58%), Positives = 281/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++VINLEL+ +D++ IEKR+ KL K K KD+ AE+ L K++ A +
Sbjct: 120 DPISDIEVINLELILADMESIEKRIVRAAKLIKQKDKDAV-----AEEPVLMKLRDAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+ ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V V + A+ +
Sbjct: 175 GQLARSIDFTEDELKIAKGLNLLTIKPMLYVANVSEDEIADADNNEYVQTVRDFATKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E+ EL EE+ +L LG+ ESGL L++++YSLLGL TYFT+G +E +
Sbjct: 235 DVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDLLVKASYSLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETVAYDD V GS+AAA+E G +R EGK+YIV
Sbjct: 295 AWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDDLVEIGSMAAAKEAGKVRQEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVMLFRFNV
Sbjct: 355 KDGDVMLFRFNV 366
>gi|384418020|ref|YP_005627380.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzicola BLS256]
gi|353460934|gb|AEQ95213.1| GTP-binding protein YchF [Xanthomonas oryzae pv. oryzicola BLS256]
Length = 363
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCF+++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFDNDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+ AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLHAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L+D E+ ++ L LLT+KP++Y+ANV E +NPH++ V A +
Sbjct: 175 GKSGRAAGLDDEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHALAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+RAG TAPQAA VIH+DFEKGFIRAET+ +DDF+ A AR+ G LR EGK+Y V
Sbjct: 292 AWTVRAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGEAGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|333907085|ref|YP_004480671.1| GTP-binding protein YchF [Marinomonas posidonica IVIA-Po-181]
gi|333477091|gb|AEF53752.1| GTP-binding protein YchF [Marinomonas posidonica IVIA-Po-181]
Length = 363
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 272/369 (73%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL LS + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLDALSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV +V
Sbjct: 60 PEKVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+PK+D++VINLEL+F+DL+ IEK++ L+ K S +K A KA LE ++Q L DGKP
Sbjct: 120 NPKADIEVINLELIFADLESIEKQI--LRTAKNAKSGNKEAIAHKAFLESVKQHLEDGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + L+D + IKQL LLT KP +Y+ANVAE + NPH+N V +A++ + V
Sbjct: 178 VRVMELSDDQAKEIKQLHLLTTKPTMYIANVAEDGFEN---NPHLNVVKEIAAEEGAMVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I Q+EAE++EL +EE ++L +G+ E GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 PICNQLEAEISELDAEEMQDFLDEMGMEEPGLDRVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G T PQAAGVIH+DFEKGFIRAE V YDDF+ + A+E G R EGKDYIV++G
Sbjct: 295 VKQGATGPQAAGVIHTDFEKGFIRAEVVGYDDFIQYKGESGAKEAGKWRLEGKDYIVKDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|406669700|ref|ZP_11076965.1| GTP-binding protein YchF [Facklamia ignava CCUG 37419]
gi|405582750|gb|EKB56742.1| GTP-binding protein YchF [Facklamia ignava CCUG 37419]
Length = 366
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 275/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL +S +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDRRLQAISSVIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P + EF DIAG+VKGAS+GEGLGNKFLS+IREVD+I VVRCF+D +I HV+G+V
Sbjct: 60 PQKIIPTTFEFTDIAGIVKGASKGEGLGNKFLSNIREVDAICHVVRCFDDENITHVDGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ I+KR+ +++K + KD ++ + E L +++ AL +
Sbjct: 120 DPIEDIETINLELILADLESIDKRITRVEKLARLKDKEAVM---ELNILTRLKDALEHNQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
A SV N E ++ L LLT KP++YVAN+ E D+A+P NP++++V LA +
Sbjct: 177 MANSVEFNKEEEPIVRGLFLLTRKPMLYVANIGEEDVANPTDNPYLSQVQALAESQGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E E+ L EE+ +L + ESGL LI++ YSLLGL TYFT+GEKE +AW
Sbjct: 237 VPVCASLEEEIAVLDDEEKALFLEEYDMEESGLDKLIQAAYSLLGLGTYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQAAGVIH+DFE+GFIRAETV++DD +A+GS+A A+E GL RSEGK+Y+VQ+
Sbjct: 297 TFKKGMKAPQAAGVIHTDFERGFIRAETVSFDDLMASGSMAKAKENGLYRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|424971797|ref|ZP_18385205.1| GTP-binding protein YchF [Enterococcus faecium P1139]
gi|424978586|ref|ZP_18391496.1| GTP-binding protein YchF [Enterococcus faecium P1123]
gi|402957353|gb|EJX74745.1| GTP-binding protein YchF [Enterococcus faecium P1139]
gi|402961169|gb|EJX78226.1| GTP-binding protein YchF [Enterococcus faecium P1123]
Length = 370
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/371 (57%), Positives = 281/371 (75%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+ F TI+PNVG+V VPD RL L+ L
Sbjct: 5 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYLFATIDPNVGMVEVPDWRLQRLTELVH 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 64 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+D INLELV +DL+ I KR ++ AK +++K KDA E A L+KI+ L +G
Sbjct: 124 DPLEDIDTINLELVLADLESINKRYTRV----AKVAKTKDKDAVAELAVLDKIKPVLEEG 179
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ + E+ +K L LLT KPI+YVANV+E D+AD +N +V EV N A++ +
Sbjct: 180 KSARTIEFTEEEQKIVKSLFLLTTKPILYVANVSEDDVADADANHYVQEVRNFAAEENAE 239
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ +SA+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +A
Sbjct: 240 VIVVSARAEEEIAELDEEDKAEFLEALGIEESGLDQLIRAAYDLLGLATYFTAGEQEVRA 299
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGKDY+VQ
Sbjct: 300 WTFKKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMHAAKEAGRVRLEGKDYVVQ 359
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 360 DGDVMLFRFNV 370
>gi|406982184|gb|EKE03538.1| hypothetical protein ACD_20C00191G0015 [uncultured bacterium]
Length = 365
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 269/369 (72%), Gaps = 7/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNA+ A++AN+PFCTIEPNVG+V VPD RL +L ++K+
Sbjct: 2 LRAGIVGLPNVGKSTLFNALTSTKNAESANYPFCTIEPNVGVVTVPDERLWILKDIAKTN 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+P ++EFVDIAGLVKGAS+GEGLGN+FL HIREVD+I+ VVRCFED + +HV GK+DP
Sbjct: 62 VVIPTAIEFVDIAGLVKGASKGEGLGNQFLGHIREVDAIIHVVRCFEDENTIHVAGKIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
+D++ IN+EL +DL+ +EKR +++ AK +S+ K+A E + ++K+ + L +GKP
Sbjct: 122 ANDIETINMELALADLNTVEKRKDRI----AKQVKSREKNAIIEDSVVDKLMELLSEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
+ E+ + L LL+ KP+IY ANV+E+DL G+N V +V + V
Sbjct: 178 FPMDLFTEEEKPFVNNLHLLSCKPVIYAANVSEADLV-KGTNKFVEQVKEYTKTHLAEVV 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ+E+EL EL EE E+L LGV SG+ +I++ Y LLGLRTYFT GEKE +AWT
Sbjct: 237 VISAQIESELAELSPEEASEFLKDLGVDNSGINKMIKAVYHLLGLRTYFTVGEKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I GM APQAAGVIH+DFEKGFIRAE Y+DFV AGS A+E+G+ R EGK+YIVQ+G
Sbjct: 297 ITTGMKAPQAAGVIHTDFEKGFIRAEITGYNDFVNAGSDKMAKERGVTRLEGKEYIVQDG 356
Query: 415 DVMLFRFNV 423
D++ FRF V
Sbjct: 357 DIVHFRFAV 365
>gi|401680876|ref|ZP_10812786.1| GTP-binding protein YchF [Veillonella sp. ACP1]
gi|429759173|ref|ZP_19291677.1| GTP-binding protein YchF [Veillonella atypica KON]
gi|400218215|gb|EJO49100.1| GTP-binding protein YchF [Veillonella sp. ACP1]
gi|429180381|gb|EKY21602.1| GTP-binding protein YchF [Veillonella atypica KON]
Length = 384
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/384 (53%), Positives = 282/384 (73%), Gaps = 5/384 (1%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
T + F+ +S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V
Sbjct: 5 TKNEINFNKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVD 63
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+R
Sbjct: 64 VPDSRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIR 123
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEK 219
CF+D +I HV G +DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE
Sbjct: 124 CFDDPNITHVAGSIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AEL 180
Query: 220 AALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 279
LE+I + L + KP R+ LN+ E + IK+L LLT KP +YVAN++E +++D +N HV
Sbjct: 181 PLLERIIEGLGEAKPVRAQGLNEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEHV 240
Query: 280 NEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGL 339
V A + +G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL
Sbjct: 241 KRVEEYAKNEGAGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGL 300
Query: 340 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREK 399
YFT+GE E +AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EK
Sbjct: 301 INYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEK 360
Query: 400 GLLRSEGKDYIVQEGDVMLFRFNV 423
GL+R EGK+Y++++GDV FRFNV
Sbjct: 361 GLVRLEGKEYVMKDGDVTHFRFNV 384
>gi|255659988|ref|ZP_05405397.1| GTP-binding protein YchF [Mitsuokella multacida DSM 20544]
gi|260847741|gb|EEX67748.1| GTP-binding protein YchF [Mitsuokella multacida DSM 20544]
Length = 368
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 276/370 (74%), Gaps = 6/370 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+VAVPDPRL VL L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVAVPDPRLKVLHELYNS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCF D +I HV G +D
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFVDPNITHVEGGID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+D+I EL +DL+ +EKR+ KL K K+ + ++K++D L +I+ AL +G P
Sbjct: 122 PLRDIDIIQTELCLADLEIVEKRIMKLAKIAKSGNKEAKVED---EILRRIKAALDEGTP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 293
AR V L++ + + IK++ LLT+KP +YV NVAE ++A NP+V +V A+ +
Sbjct: 179 ARQVDLSEDDLELIKEMNLLTLKPTLYVTNVAEDEVATAYDENPYVQQVKEYAAKEGAEV 238
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VE+E+ EL EE +L LG +ESGL LI++ + LLGL+T+ T+G E +AW
Sbjct: 239 VAISAKVESEIAELDEEEAKAFLEDLGETESGLDRLIKAAFDLLGLQTFLTAGPDECRAW 298
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAP+AAG IH+DFE+GFIRAE V Y+D +AAGS+AAAREKG +R EGKDY++Q+
Sbjct: 299 TIVKGTTAPKAAGKIHTDFERGFIRAEIVNYNDLIAAGSVAAAREKGQVRVEGKDYVMQD 358
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 359 GDVVNFRFNV 368
>gi|357032400|ref|ZP_09094339.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
morbifer G707]
gi|356414172|gb|EHH67820.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
morbifer G707]
Length = 368
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 270/372 (72%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPD RL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDARLDTLARIGK 64
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 65 SQRTIPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 124
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D D+I EL+ +DLD +EKR ++K +G +D+Q++L+ +E + AL +
Sbjct: 125 DPVRDADIIETELMLADLDSLEKRQVNLQKRARGNDRDAQAQLE-----LIEPLIAALRE 179
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PAR+ E+++ + L LLT KP++YV NV E+ A N H V A + +
Sbjct: 180 GRPARTAVPEGQEKEAAR-LQLLTTKPVLYVCNVEEASTAT--GNAHSEAVRRRAEEEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA +EAE+++LP E+R E+L LG+S+SGL +I + YSLLGLRTYFT G KE +
Sbjct: 237 GAVVVSAAIEAEVSQLPPEDRTEFLEGLGLSDSGLDRVIAAGYSLLGLRTYFTVGPKEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAA VIH+DFE+GFI ETVA++D+VA A A+E G LR EGKDY+V
Sbjct: 297 AWTITEGTRAPQAAAVIHNDFERGFIACETVAFNDYVACNGEAGAKEAGKLRIEGKDYVV 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV+LFRFNV
Sbjct: 357 QDGDVLLFRFNV 368
>gi|282883227|ref|ZP_06291826.1| GTP-binding protein YchF [Peptoniphilus lacrimalis 315-B]
gi|281297039|gb|EFA89536.1| GTP-binding protein YchF [Peptoniphilus lacrimalis 315-B]
Length = 364
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/368 (55%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +SKS
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTQAG-AEAANYPFATIEPNIGVVNVPDERLKVLSDISKSG 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +++HV+GKVDP
Sbjct: 60 RIVYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENVIHVDGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLELVFSDL+QI+KR+ +L+K D K + ++K+ L +GKPAR
Sbjct: 120 VRDIENINLELVFSDLEQIDKRLARLEKQAKADKSLKPELELLLKVKKV---LEEGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
S+ L D E IK LLT+KP+IYVANV+E D + G N V +V +A V
Sbjct: 177 SLELTDEEEKIIKNFALLTLKPVIYVANVSEEDAHNNGQDNEMVKKVKEMAEKSNDETVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
IS ++E+E++EL +E+ +L LG+ ESGL LI+S+Y LLGL ++ T+GE E++AWTI
Sbjct: 237 ISCEIESEISELSEDEKQLFLKDLGLDESGLDKLIKSSYKLLGLISFLTTGEMESRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G AP AAG IH+D E+GFI+A+ ++Y+D V+ GS+AAAREKGL+RSEGKDYI+Q+GD
Sbjct: 297 KKGTKAPGAAGKIHTDMERGFIKADIISYEDLVSQGSMAAAREKGLIRSEGKDYIMQDGD 356
Query: 416 VMLFRFNV 423
V +F+FNV
Sbjct: 357 VCVFKFNV 364
>gi|389818767|ref|ZP_10208942.1| GTP-dependent nucleic acid-binding protein [Planococcus antarcticus
DSM 14505]
gi|388463677|gb|EIM06024.1| GTP-dependent nucleic acid-binding protein [Planococcus antarcticus
DSM 14505]
Length = 366
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 216/372 (58%), Positives = 280/372 (75%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIDPNVGIVEVPDERLDKLTELVD 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGNKFLSHIREVD+I QVVRCF D++I HV GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNKFLSHIREVDAICQVVRCFADDNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRME---KLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++VINLELV +D++ IEKR+ KL K K KD+ AE+ L K+++A +
Sbjct: 120 DPISDIEVINLELVLADMESIEKRIARAAKLVKQKDKDAV-----AEEPVLMKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G ARS+ + E K L LLT+KP++YVANV+E ++AD +N +V +V A+ +
Sbjct: 175 GDLARSIEFTEDELRIAKGLNLLTLKPMLYVANVSEDEIADADNNEYVQKVREFAAKDNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E+ EL EE+ +L LG+ ESGL L++++Y+LLGL TYFT+G +E +
Sbjct: 235 DVIVICAKIEEEMAELEDEEKEMFLEELGIKESGLDQLVKASYNLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETVAYD+ V GS+AAA+E G +R EGK+YIV
Sbjct: 295 AWTFKKGMKAPQCAGVIHSDFERGFIRAETVAYDELVETGSMAAAKEAGKVRQEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVMLFRFNV
Sbjct: 355 KDGDVMLFRFNV 366
>gi|375089992|ref|ZP_09736314.1| GTP-binding protein YchF [Facklamia languida CCUG 37842]
gi|374566278|gb|EHR37525.1| GTP-binding protein YchF [Facklamia languida CCUG 37842]
Length = 366
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 276/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDQRLDQIATIYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EF DIAG+VKGAS+GEGLGNKFL++IR+VD+I VVRCF+D++I HV GKV
Sbjct: 60 PQKTIPTTIEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICHVVRCFDDSNITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ I+KR+ ++ K K KD ++ AE L K+++AL + +
Sbjct: 120 DPIDDIETINLELILADLETIDKRLTRVSKIAKTKDKEAV---AEYEVLIKLKEALENNQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
A +V D + ++ L LLT K ++YVAN+ E ++ADP +NPH+ +V LAS +
Sbjct: 177 MANAVDFYDEQLPYVRNLFLLTRKKMLYVANIGEEEVADPEANPHLAKVRELASQQGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA++E E+ EL +E+ +L G++ESGL LI+S Y LLGL TYFT+GEKE +AW
Sbjct: 237 VPVSARLEEEIAELDDDEKASFLEDYGMTESGLDRLIQSVYHLLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQAAGVIHSDFE+GFIRAET++Y D + GS +A +E G RSEGK+Y+V++
Sbjct: 297 TFKQGMKAPQAAGVIHSDFERGFIRAETMSYQDLITYGSESAVKEAGHYRSEGKEYLVKD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|295398152|ref|ZP_06808201.1| GTP-binding protein YchF [Aerococcus viridans ATCC 11563]
gi|294973671|gb|EFG49449.1| GTP-binding protein YchF [Aerococcus viridans ATCC 11563]
Length = 364
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 273/370 (73%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ ++ + +AAN+PF TI+PNVG+V VPD RL L+
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKS-QVEAANYPFATIDPNVGVVEVPDSRLQTLTEFYV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRCFEDGNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ SDL+ + KR EK +K K+KD + + E AL K+++ L GK
Sbjct: 120 DPADDIETINLELILSDLETVNKRYEKAVKMAKSKDHDAIV---EANALAKVKEVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR+VT + E+ I ++ LLT KPI+YVANV E D A N +V V +AS+ +
Sbjct: 177 SARTVTFTEEEQPFIDRMFLLTTKPILYVANVNEDDAA--TGNDYVEIVRGIASEEDAEV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SAQ+E EL L E+R ++ LG+ SGL LI+ Y+LLGL TYFT+GE+E +AW
Sbjct: 235 VIVSAQIEEELASLDDEDREMFMEDLGMEVSGLDRLIQRAYTLLGLETYFTAGEQEVRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQAAGVIHSDFEKGFIRAET++Y+D + GS AA+E G RSEGKDY+V++
Sbjct: 295 TFKKGMKAPQAAGVIHSDFEKGFIRAETLSYEDLLTYGSEKAAKEAGRYRSEGKDYVVKD 354
Query: 414 GDVMLFRFNV 423
GD++LFRFNV
Sbjct: 355 GDILLFRFNV 364
>gi|300813415|ref|ZP_07093764.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300512473|gb|EFK39624.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 364
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 206/368 (55%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +SKS
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTQAG-AEAANYPFATIEPNIGVVNVPDERLKVLSDISKSG 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +++HV+GKVDP
Sbjct: 60 RIVYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENVIHVDGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLELVFSDL+QI+KR+ +L+K D K + ++K+ L +GKPAR
Sbjct: 120 VRDIENINLELVFSDLEQIDKRLARLEKQAKADKSLKPELELLLKVKKV---LEEGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
S+ L D E IK LLT+KP+IYVANV+E D + G N V +V +A V
Sbjct: 177 SLELTDEEEKIIKNFALLTLKPVIYVANVSEEDAHNNGQDNEMVKKVKEMADKSNDETVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
IS ++E+E++EL +E+ +L LG+ ESGL LI+S+Y LLGL ++ T+GE E++AWTI
Sbjct: 237 ISCEIESEISELSEDEKQLFLKDLGLDESGLDKLIKSSYKLLGLISFLTTGEMESRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G AP AAG IH+D E+GFI+A+ ++Y+D V+ GS+AAAREKGL+RSEGKDYI+Q+GD
Sbjct: 297 KKGTKAPGAAGKIHTDMERGFIKADIISYEDLVSQGSMAAAREKGLIRSEGKDYIMQDGD 356
Query: 416 VMLFRFNV 423
V +F+FNV
Sbjct: 357 VCVFKFNV 364
>gi|390991982|ref|ZP_10262231.1| GTP-dependent nucleic acid-binding protein engD [Xanthomonas
axonopodis pv. punicae str. LMG 859]
gi|372553269|emb|CCF69206.1| GTP-dependent nucleic acid-binding protein engD [Xanthomonas
axonopodis pv. punicae str. LMG 859]
Length = 363
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|410945054|ref|ZP_11376795.1| GTP-binding protein YchF [Gluconobacter frateurii NBRC 101659]
gi|414341964|ref|YP_006983485.1| ychF [Gluconobacter oxydans H24]
gi|411027299|gb|AFW00554.1| ychF [Gluconobacter oxydans H24]
gi|453328672|dbj|GAC89100.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
thailandicus NBRC 3255]
Length = 364
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 269/372 (72%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPDPRL +L + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDPRLDILVKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKEIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRETDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D D+I EL+ +DL+ +EKR ++K +G +++Q++L+ +E + AL D
Sbjct: 121 DPVRDADIIETELMLADLESLEKRQINLQKRARGNDREAQAQLE-----LMEPLIAALRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ E ++ + L LLT KP++YV NV E+ A N H V A + +
Sbjct: 176 GKPARTAVPKGQEEEAAR-LQLLTTKPVLYVCNVEEASAAT--GNAHSEAVRKRAEEEGA 232
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA +EAE+++LP E+R E+L LG+S+SGL +I + Y LLGLRTYFT G KE +
Sbjct: 233 GVVIVSAAIEAEVSQLPQEDRTEFLEGLGLSDSGLDRVIAAGYRLLGLRTYFTVGPKEAR 292
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI AG APQAA VIH+DFE+GFI ETVA+DD+VA A A+E G LR EGK+Y+V
Sbjct: 293 AWTITAGTKAPQAAAVIHNDFERGFIACETVAFDDYVACNGEAGAKEAGKLRIEGKEYVV 352
Query: 412 QEGDVMLFRFNV 423
Q+GD++LFRFNV
Sbjct: 353 QDGDILLFRFNV 364
>gi|312793829|ref|YP_004026752.1| gtp-binding protein ychf [Caldicellulosiruptor kristjanssonii
177R1B]
gi|344996313|ref|YP_004798656.1| GTP-binding protein YchF [Caldicellulosiruptor lactoaceticus 6A]
gi|312180969|gb|ADQ41139.1| GTP-binding protein YchF [Caldicellulosiruptor kristjanssonii
177R1B]
gi|343964532|gb|AEM73679.1| GTP-binding protein YchF [Caldicellulosiruptor lactoaceticus 6A]
Length = 362
Score = 419 bits (1078), Expect = e-115, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 275/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++ INLEL+F+D++ +E+R++K +K AK+S+ + E +EKI L GK AR
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNSKEAAHELE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGL+RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|21241722|ref|NP_641304.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
axonopodis pv. citri str. 306]
gi|381171813|ref|ZP_09880953.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|418518295|ref|ZP_13084444.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|21107091|gb|AAM35840.1| GTP-binding protein [Xanthomonas axonopodis pv. citri str. 306]
gi|380687773|emb|CCG37440.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas citri
pv. mangiferaeindicae LMG 941]
gi|410704372|gb|EKQ62856.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 363
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|399517301|ref|ZP_10758854.1| GTP-binding and nucleic acid-binding protein YchF [Leuconostoc
pseudomesenteroides 4882]
gi|398647799|emb|CCJ66881.1| GTP-binding and nucleic acid-binding protein YchF [Leuconostoc
pseudomesenteroides 4882]
Length = 366
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDERLARIQAIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D++ IN EL+ +DL+ ++KR K+ +A K AE A LEK++ AL G+
Sbjct: 120 NPLDDIETINTELILADLETVDKRYAKV--ARAAKGSDKAAKAEFAVLEKLKPALEAGQS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V +D E+ +K L LLT KP++YVAN+AE D+ADP S+ + NE+ A+ + +
Sbjct: 178 ARTVAFSDDEQKIVKGLFLLTTKPVLYVANLAEDDMADPESSKYFNEIKTFANSEGADVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ ELP +ER E+L GV E GL L R+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEEIAELPDDERAEFLEMAGVDEPGLNKLTRAAYHLLDLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
RAG APQAAGVIHSDFE+GFIRAET+++DD A GS+ A +E G LRSEGK+Y+VQ+G
Sbjct: 298 FRAGAKAPQAAGVIHSDFERGFIRAETISFDDLDALGSVKAVKEAGKLRSEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|402835770|ref|ZP_10884328.1| GTP-binding protein YchF [Mogibacterium sp. CM50]
gi|402273280|gb|EJU22485.1| GTP-binding protein YchF [Mogibacterium sp. CM50]
Length = 363
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 275/369 (74%), Gaps = 8/369 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ + K++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVTVPDKRLEVLTDIYKAR 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + ++EF DIAGLVKGAS+GEGLGNKFL HIREV +I+ VVRCF +++IVHVNG VDP
Sbjct: 60 KTIYTTIEFCDIAGLVKGASKGEGLGNKFLGHIREVSAIVHVVRCFANDNIVHVNGHVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ IN EL+F+DL+ +E+ + KL K KA S +K D LE+++ L GK A
Sbjct: 120 LDDIETINTELIFADLEVLERAIAKLTKSMKADKSLAKQLD----LLERVKAWLETGKSA 175
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
R++ LN E + I + LLT KP+IYVANV+E D++ N HV +V A+ +G V
Sbjct: 176 RAMELNKEEGEIISGMDLLTFKPVIYVANVSEDDVSSD-DNKHVQKVSEFAASEGAGCVK 234
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++EAE+ EL +EER +L LG+SESGL LI+++YSLL L +Y T+GE E +AWTI
Sbjct: 235 ICAEIEAEMAELDAEEREMFLEDLGISESGLDQLIKASYSLLNLISYLTAGEPEVRAWTI 294
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFV-AAGSLAAAREKGLLRSEGKDYIVQEG 414
G APQAAG IH+DFEKGFIRAET+AY+ + GSLA ARE+GL+RSEGKDY+VQ+G
Sbjct: 295 TKGTKAPQAAGKIHTDFEKGFIRAETIAYNKLIECGGSLAKAREQGLIRSEGKDYVVQDG 354
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 355 DVIHFLFNV 363
>gi|315640397|ref|ZP_07895510.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
italicus DSM 15952]
gi|315483853|gb|EFU74336.1| GTP-dependent nucleic acid-binding protein EngD [Enterococcus
italicus DSM 15952]
Length = 366
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDWRLQRLTELVR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF+D++I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSHIRQVDAICHVVRCFDDDNITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D+D INLELV +DLD I KR ++ K K KD Q+ AE A L+KI+ L +G
Sbjct: 120 NPLEDIDTINLELVLADLDSITKRYTRVAKVAKTKDKQAV---AELAVLDKIKPVLEEGL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARS+ + E+ +K L LLT KP++YVANVAE D+AD N +V EV N A+ +
Sbjct: 177 SARSIEFTEEEQKIVKSLFLLTTKPVLYVANVAEEDVADTEGNHYVQEVRNFAASENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+ E E+ EL E++ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GE+E +AW
Sbjct: 237 IVVCARAEEEIAELEEEDKAEFLEALGIEESGLDKLIRAAYDLLGLATYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R G+ APQAAG+IHSDFE+GFIRAETV+++D G++ AA+E G +R EGK+Y+VQ+
Sbjct: 297 TFRKGIKAPQAAGIIHSDFERGFIRAETVSFEDLDHYGNMQAAKEAGRVRLEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 357 GDVMLFRFNV 366
>gi|169351713|ref|ZP_02868651.1| hypothetical protein CLOSPI_02494 [Clostridium spiroforme DSM 1552]
gi|169291935|gb|EDS74068.1| GTP-binding protein YchF [Clostridium spiroforme DSM 1552]
Length = 366
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 268/371 (72%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDYRLEKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + F DIAGLVKGAS+GEGLGNKFL +IRE D+I +VVRCF D D+ HV+G V
Sbjct: 60 PKKTVPTTFGFTDIAGLVKGASRGEGLGNKFLGNIRETDAICEVVRCFRDKDVTHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+F+DL+ +E+R+ +L K +QS KDA E A LEK++ L
Sbjct: 120 DPIRDIETINLELIFADLETVERRIGRL----GKKAQSGDKDAKVELAILEKLKATLEAN 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR + + E +KQ LLTMKPIIYVAN+ E DL DP SNPH +V+ A++ +
Sbjct: 176 KPARIIDFSKEEMAIVKQYTLLTMKPIIYVANLGEEDLEDPNSNPHYVKVVEFATNEGAD 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++E+EL + E+ +L LG+ ESGL LI+ Y LLGLRTYFT+G +E +A
Sbjct: 236 VVPICAKIESELVGMDKAEKDMFLQELGIEESGLDKLIKEAYKLLGLRTYFTAGIQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GMTAP+ AG+IHSDF++GFI+AET ++DD V GS A +E G +R EGK Y+ Q
Sbjct: 296 WTFKEGMTAPEMAGIIHSDFQRGFIKAETYSFDDLVEYGSEHALKEAGKIRQEGKQYVGQ 355
Query: 413 EGDVMLFRFNV 423
+GD+MLF+FNV
Sbjct: 356 DGDIMLFKFNV 366
>gi|284047524|ref|YP_003397863.1| GTP-binding protein YchF [Acidaminococcus fermentans DSM 20731]
gi|283951745|gb|ADB46548.1| GTP-binding protein YchF [Acidaminococcus fermentans DSM 20731]
Length = 369
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/370 (57%), Positives = 274/370 (74%), Gaps = 3/370 (0%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 3 STNLEMGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLKVLADMF 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
S+K VPA ++FVDIAGLVKGAS+GEGLGNKFLSHIR+ D+I +VVRCFED +I HV G
Sbjct: 62 HSKKIVPAGMKFVDIAGLVKGASKGEGLGNKFLSHIRQTDAIAEVVRCFEDGNITHVEGS 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+DP DV++IN EL +DL+ +EK++ +K K + K A A L++I AL +G
Sbjct: 122 IDPVRDVEIINTELCLADLESVEKQL--VKAQKLIKAGDKKAAARAALLQRISDALGEGI 179
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P R V + D E+ +K+L LLT KPI+YVANVAE + AD N +V + + A+ +
Sbjct: 180 PVRRVEMTDDEKAGLKELDLLTSKPILYVANVAEEEAADWSGNAYVKTLEDYAAQENAQV 239
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA+VE E+ ELP +E EYL G++E+GL LI++ + LLGL+T+ T+GE E++AW
Sbjct: 240 IVISAKVEEEIAELPEDEAKEYLEMEGLTEAGLDRLIKAGFKLLGLQTFLTAGEMESRAW 299
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAG IH+DFEKGFIRAE V+YDD V GS AA+EKGL+R EGKDYI+Q+
Sbjct: 300 TIVQGSTAPQAAGKIHTDFEKGFIRAEIVSYDDLVKCGSKQAAKEKGLVRLEGKDYIMQD 359
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 360 GDVVEFRFNV 369
>gi|320528923|ref|ZP_08030015.1| GTP-binding protein YchF [Selenomonas artemidis F0399]
gi|320138553|gb|EFW30443.1| GTP-binding protein YchF [Selenomonas artemidis F0399]
Length = 381
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 216/369 (58%), Positives = 272/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 16 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTVLTDLYHS 74
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 75 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 134
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKR K+ K S SK AE AALE+++ L G+PA
Sbjct: 135 PLRDIDIIETELCLADLEAVEKRAAKVTK--LLKSGSKEAKAEAAALERLKSVLDAGRPA 192
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R L++ E+ ++ L LLT KPI+YVANV E + A NPHV V A + V
Sbjct: 193 REAELSEEEQTLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQTVKEYAGRTGAQVV 252
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE V +L LG+ ESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 253 TVSARLEEEIAELDAEEAVVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 312
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V+YDD V+ GS+AAAR+KGL+R EGKDY++Q+G
Sbjct: 313 ITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVSLGSVAAARDKGLVRLEGKDYVMQDG 372
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 373 DVVNFRFNV 381
>gi|424795618|ref|ZP_18221444.1| GTP-binding protein [Xanthomonas translucens pv. graminis
ART-Xtg29]
gi|422795383|gb|EKU24091.1| GTP-binding protein [Xanthomonas translucens pv. graminis
ART-Xtg29]
Length = 363
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/372 (56%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ANV E + N H++ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NLHLDAVRARAATEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|342218570|ref|ZP_08711181.1| GTP-binding protein YchF [Megasphaera sp. UPII 135-E]
gi|341589631|gb|EGS32903.1| GTP-binding protein YchF [Megasphaera sp. UPII 135-E]
Length = 368
Score = 419 bits (1076), Expect = e-114, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 274/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD R+ VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDERIDVLTNM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
+K +PA + FVDIAGLV GA+ GEGLGNKFLSHIRE D+I +VVRCF+D +I HV G
Sbjct: 60 YHPKKTIPAVMRFVDIAGLVAGAASGEGLGNKFLSHIRETDAIAEVVRCFDDANITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D+D+IN EL +D++ ++R++++ K D Q+K AE + L + + L +
Sbjct: 120 SVDPIRDIDIINTELCLADIEVAQRRLDRISKIATCGDKQAK---AEASVLTVVLKTLEE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ +L + + +K+L LLT KPIIY+ANVAE + A P NP+V ++ A+ Q+
Sbjct: 177 GKPARTASLTEDDWQWVKELNLLTAKPIIYIANVAEEEAAHPEDNPYVQRLIEFATHEQA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA++EAE+ EL EE +LA LG++ESGL +I+++Y+LLGL +FT+G E +
Sbjct: 237 QVVAVSAKIEAEIAELSPEEGTSFLAELGLTESGLDRVIKASYTLLGLINFFTAGADEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP+AAG IH+D E+GFIRAE V+Y+D +A GS AA+EKGL+R EGKDYI+
Sbjct: 297 AWTIVNGTKAPKAAGKIHTDIERGFIRAEIVSYEDLIACGSEQAAKEKGLVRLEGKDYIM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTYFRFNV 368
>gi|303228726|ref|ZP_07315546.1| GTP-binding protein YchF [Veillonella atypica ACS-134-V-Col7a]
gi|302516600|gb|EFL58522.1| GTP-binding protein YchF [Veillonella atypica ACS-134-V-Col7a]
Length = 384
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/384 (53%), Positives = 282/384 (73%), Gaps = 5/384 (1%)
Query: 41 TSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVA 100
T + F+ +S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V
Sbjct: 5 TKNEINFNKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVD 63
Query: 101 VPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVR 160
VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+R
Sbjct: 64 VPDSRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIR 123
Query: 161 CFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEK 219
CF+D +I HV G +DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE
Sbjct: 124 CFDDPNITHVAGSIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AEL 180
Query: 220 AALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 279
LE+I + L + KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N HV
Sbjct: 181 PLLERIIEGLGEAKPVRAQGLDEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEHV 240
Query: 280 NEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGL 339
V A + +G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL
Sbjct: 241 KRVEEYAKNEGAGIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGL 300
Query: 340 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREK 399
YFT+GE E +AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EK
Sbjct: 301 INYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEK 360
Query: 400 GLLRSEGKDYIVQEGDVMLFRFNV 423
GL+R EGK+Y++++GDV FRFNV
Sbjct: 361 GLVRLEGKEYVMKDGDVTHFRFNV 384
>gi|312622163|ref|YP_004023776.1| GTP-binding protein ychf [Caldicellulosiruptor kronotskyensis 2002]
gi|312202630|gb|ADQ45957.1| GTP-binding protein YchF [Caldicellulosiruptor kronotskyensis 2002]
Length = 362
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 275/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++ INLEL+F+D++ +E+R++K +K AK+++ + E +EKI L GK AR
Sbjct: 120 RRDIETINLELIFADMEMLERRLDKTRK-LAKNNKEAAHELE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ +LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIADLPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKG +RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGFVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|56965865|ref|YP_177599.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus clausii
KSM-K16]
gi|56912111|dbj|BAD66639.1| GTP-binding protein [Bacillus clausii KSM-K16]
Length = 366
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 274/369 (74%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDVRLEKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF D +I HV+G V
Sbjct: 60 PKKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFADENITHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D++VINLEL+ +DL+ ++KR+ ++ K ++ K AE LE +++A + KP
Sbjct: 120 NPLRDIEVINLELILADLESVDKRIGRVAK--LAKAKDKAAVAELPVLEALKEAFENEKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ +D + +KQL LLT KP++YVANVAE DL N +V +V A S +
Sbjct: 178 ARSIDFDDDQLKIVKQLHLLTSKPVLYVANVAEDDLLAGEDNDYVKQVKAFAEAENSNVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E+E+ EL +E+ +L LG+ ESGL LIR+ YSLLGL TYFT+GE+E +AWT
Sbjct: 238 VVCAKIESEIAELEGDEKALFLEELGIQESGLDQLIRAAYSLLGLETYFTAGEQEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
R G APQAAG+IH+DFE+GFIRAE VAYDD +AAG + AA+E+G +R EGK+Y+VQ+G
Sbjct: 298 YRRGTKAPQAAGIIHTDFERGFIRAEVVAYDDLIAAGGMVAAKERGKVRLEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 358 DVIHFRFNV 366
>gi|302871602|ref|YP_003840238.1| GTP-binding protein YchF [Caldicellulosiruptor obsidiansis OB47]
gi|302574461|gb|ADL42252.1| GTP-binding protein YchF [Caldicellulosiruptor obsidiansis OB47]
Length = 362
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 276/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL +L+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDILARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++ INLEL+F+D++ +E+R++K +K AK+++ + E +EKI L GK AR
Sbjct: 120 RRDIETINLELIFADMEMLERRLDKTRK-LAKNNKEAAHEVE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E+D+ N +V + +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISENDIGK--ENEYVKIIKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYKLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGL+RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|148265699|ref|YP_001232405.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter
uraniireducens Rf4]
gi|146399199|gb|ABQ27832.1| GTP-binding protein YchF [Geobacter uraniireducens Rf4]
Length = 364
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 212/369 (57%), Positives = 276/369 (74%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD R+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERMKQLAVIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VI EL +DLD +EK++ +++K AK K+KD E ++++ A+ GK
Sbjct: 120 DPVSDIEVIKTELGLADLDSVEKKLVRVEK-LAKSGDKKIKD-EADFYQRLKSAVEQGKS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R V ND E+ +++L LLT KP++YVANVAE DL G++P V V LA + V
Sbjct: 178 PRDVVQNDDEKLLLRELHLLTDKPVLYVANVAEDDL--EGTHPFVGRVRELAVAEGAKLV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI ++EAE++EL EE+ +LA +G+ ESGL LIR+ Y LLGL TYFT+G KE +AWT
Sbjct: 236 TICGRIEAEISELAGEEKQAFLAEMGLKESGLDRLIRTGYELLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIHSDFEKGFIRAE +A++DF+AAG A A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 ITRGTKAPQAAGVIHSDFEKGFIRAEVIAFNDFIAAGGEAGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|418523111|ref|ZP_13089135.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410700267|gb|EKQ58829.1| GTP-binding protein YchF [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 363
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDVAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDTDRDSFLADLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|312127334|ref|YP_003992208.1| gtp-binding protein ychf [Caldicellulosiruptor hydrothermalis 108]
gi|311777353|gb|ADQ06839.1| GTP-binding protein YchF [Caldicellulosiruptor hydrothermalis 108]
Length = 362
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 275/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLAKIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++ INLEL+F+D++ +E+R++K +K AK+++ + E +EKI L GK AR
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNNKEAAHELE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGL+RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|313895727|ref|ZP_07829283.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312975853|gb|EFR41312.1| GTP-binding protein YchF [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 374
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 214/369 (57%), Positives = 272/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL L+ L S
Sbjct: 9 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTALTDLYHS 67
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 68 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 127
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKR K+ K S SK AE AALE+++ L G+PA
Sbjct: 128 PLRDIDIIETELCLADLEAVEKRAAKVTK--LLKSGSKEAKAEAAALERLKSVLDAGRPA 185
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R L++ E+ ++ L LLT KPI+YVANV E + A NPHV V + A+ + V
Sbjct: 186 REAELSEEEQSLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQAVQDYAARTGAQVV 245
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 246 TVSARLEEEIAELDAEEAAVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 305
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V+YDD V+ GS+AAAR+KGL+R EGKDY++Q+G
Sbjct: 306 ITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVSLGSVAAARDKGLVRLEGKDYVMQDG 365
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 366 DVVNFRFNV 374
>gi|386577008|ref|YP_006073413.1| GTP-binding protein [Streptococcus suis GZ1]
gi|292557470|gb|ADE30471.1| GTP-binding protein [Streptococcus suis GZ1]
Length = 377
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/377 (55%), Positives = 277/377 (73%), Gaps = 6/377 (1%)
Query: 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS 110
SK +MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+
Sbjct: 3 SKKNMSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLT 61
Query: 111 GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHV 170
L +K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 ELIIPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMRE 121
Query: 171 NGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQ 226
G+ VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+
Sbjct: 122 QGREDAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIK 180
Query: 227 QALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 286
L DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP + +V ++ + A
Sbjct: 181 PVLEDGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPEAISYVQQIRDFA 240
Query: 287 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 346
+ + V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+G
Sbjct: 241 ATENAEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAG 300
Query: 347 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEG 406
EKE +AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EG
Sbjct: 301 EKEVRAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEG 360
Query: 407 KDYIVQEGDVMLFRFNV 423
K+Y+VQ+GD+M FRFNV
Sbjct: 361 KEYVVQDGDIMEFRFNV 377
>gi|294627826|ref|ZP_06706405.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
gi|292597740|gb|EFF41898.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 11122]
Length = 363
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 271/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E +NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFE---NNPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDSFLTDLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|402303023|ref|ZP_10822123.1| GTP-binding protein YchF [Selenomonas sp. FOBRC9]
gi|400379487|gb|EJP32327.1| GTP-binding protein YchF [Selenomonas sp. FOBRC9]
Length = 368
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 215/369 (58%), Positives = 270/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDARLTVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE +DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESSDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKR K+ K S SK AE AALE+++ L G+PA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRAAKVTK--LLKSGSKEAKAEAAALERLKSVLDAGRPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R L++ E+ ++ L LLT KPI+YVANV E + A NPHV V A + V
Sbjct: 180 REAELSEEEQTLLRDLNLLTRKPILYVANVGEDEAATADAENPHVQTVKEYAGRTGAQVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDAEEAAVFLEDLGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V+YDD V GS+AAAR+KGL+R EGKDY++Q+G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVSYDDLVVLGSVAAARDKGLVRLEGKDYVMQDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|160934893|ref|ZP_02082279.1| hypothetical protein CLOLEP_03768 [Clostridium leptum DSM 753]
gi|156866346|gb|EDO59718.1| GTP-binding protein YchF [Clostridium leptum DSM 753]
Length = 364
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 274/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPDPRL L+ L
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGVVAVPDPRLDKLAELYHPV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFE++DIVHV G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFENDDIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+ SD++ +++RM+K K D + + E ++++ L G+PAR
Sbjct: 120 ARDIETINLELILSDIEMLDRRMDKTLKMIKADKKYQ---GEYDFFQRVKDTLNQGRPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRVT 295
SV N+ E + + + LLT KPIIY AN++E D + NP+ V ++A+ +G +
Sbjct: 177 SVECNEEEGEWLSSVALLTNKPIIYAANMSEDDFKNGIEGNPYYKVVADIAASEHAGVLP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++EAE+ + EE+ +L+ +G++ESGL LIR+ YSLLGL +Y T+G+ E +AWTI
Sbjct: 237 ICAEIEAEIAGMEPEEKELFLSDMGLTESGLDRLIRACYSLLGLISYLTAGQPEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IHSDFE+GFIRAE + Y + + GS+AAA+EKGL+RSEGK+Y++Q+GD
Sbjct: 297 KKGTKAPQAAGKIHSDFERGFIRAEVIGYQELLDNGSIAAAKEKGLVRSEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|319938348|ref|ZP_08012743.1| translation-associated GTPase [Coprobacillus sp. 29_1]
gi|319806436|gb|EFW03100.1| translation-associated GTPase [Coprobacillus sp. 29_1]
Length = 366
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 267/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ N + +AAN+PF TI+PNVG+V VPD RL L+ + K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAIT-NAQVEAANYPFATIDPNVGVVEVPDHRLEELTKICK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAGLVKGAS+GEGLGNKFL++IRE D+I +VVRCF D DI HV+G V
Sbjct: 60 PKKTVPTTFEFTDIAGLVKGASRGEGLGNKFLANIRETDAICEVVRCFRDKDITHVDGDV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP DV+ INLEL+F+DL+ +EKR+ K+ KK K+ D +SK AE L ++ L GK
Sbjct: 120 DPIRDVETINLELIFADLETVEKRIGKIEKKAKSGDKESK---AELDILVPLKDILEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ + E D +KQ LLTMKP+IYVAN+ E DL +P +NP+ E+ + AS
Sbjct: 177 PARTMEYSKDEMDIVKQFTLLTMKPLIYVANLGEEDLENPDANPYYVELKDYASKEGCDV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I A++E+EL L EE+ +L LG+ ESGL LI+ Y+LLGL T+FT G E +AW
Sbjct: 237 VPICAKIESELVGLDKEEKDMFLQDLGIDESGLDKLIKEAYALLGLNTFFTVGVDEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AGVIH+DF+KGFI+AET AYDD + GS A RE G +R EGK Y+ ++
Sbjct: 297 TFKQGMLAPEMAGVIHTDFQKGFIKAETYAYDDLIKYGSEQALREAGKIRQEGKQYVGKD 356
Query: 414 GDVMLFRFNV 423
GD+M F+FNV
Sbjct: 357 GDIMFFKFNV 366
>gi|303230338|ref|ZP_07317099.1| GTP-binding protein YchF [Veillonella atypica ACS-049-V-Sch6]
gi|302514877|gb|EFL56858.1| GTP-binding protein YchF [Veillonella atypica ACS-049-V-Sch6]
Length = 385
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 278/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 18 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 76
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 77 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVEG 136
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 137 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 193
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N HV V A + +
Sbjct: 194 AKPVRAQGLDEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEHVKRVEEYAKNEGA 253
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 254 GIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEAR 313
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDY++
Sbjct: 314 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKDYVM 373
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 374 KDGDVTHFRFNV 385
>gi|383755452|ref|YP_005434355.1| putative GTP-binding protein [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381367504|dbj|BAL84332.1| putative GTP-binding protein [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 368
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 211/370 (57%), Positives = 274/370 (74%), Gaps = 6/370 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+VAVPD RL+VL + S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVAVPDERLNVLHEMYDS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGA+ GEGLGNKFL HIR+VD++ VVRCF+D +I HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGAANGEGLGNKFLEHIRQVDAVAHVVRCFDDANITHVEGGVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+D+I EL +DL+ +EKR+ +L K K+ + ++K++D L +I+ +L +GKP
Sbjct: 122 PLRDIDIIQTELCLADLEVVEKRIMRLAKIAKSGNKEAKVEDE---ILRRIKDSLDNGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGR 293
AR V L+ + + IK + LLT+KP +YV NVAE ++A NP+V +V A +
Sbjct: 179 ARQVELSADDLEMIKDINLLTLKPTLYVTNVAEDEVATAYDENPYVQKVKEFAKAENAEV 238
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA+VEAE+ EL +EE +L LG +ESGL LI++ + LLGL+T+ T+G E +AW
Sbjct: 239 VAISAKVEAEIAELDAEEAKAFLEDLGETESGLDRLIKAAFDLLGLQTFLTAGPDECRAW 298
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAP+AAG IH+DFE+GFIRAE V YDD VA GS+AAAREKG +R EGKDY++Q+
Sbjct: 299 TITKGTTAPKAAGKIHTDFERGFIRAEIVNYDDLVANGSVAAAREKGQVRVEGKDYVMQD 358
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 359 GDVVNFRFNV 368
>gi|229020700|ref|ZP_04177427.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1273]
gi|229026916|ref|ZP_04183239.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1272]
gi|228734374|gb|EEL85045.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1272]
gi|228740595|gb|EEL90866.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1273]
Length = 369
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 279/372 (75%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E+ L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEQEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|312135392|ref|YP_004002730.1| gtp-binding protein ychf [Caldicellulosiruptor owensensis OL]
gi|311775443|gb|ADQ04930.1| GTP-binding protein YchF [Caldicellulosiruptor owensensis OL]
Length = 362
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 274/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D++ INLEL+F+D++ +E+R++K +K AK+++ + E +EKI L GK AR
Sbjct: 120 RRDIETINLELIFADMEVLERRLDKTRK-LAKNNKEAAHELE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIAALPDEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKG +RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVTFEVLVECGGFAQAKEKGFVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|423388238|ref|ZP_17365464.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-3]
gi|401643426|gb|EJS61123.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG1X1-3]
Length = 366
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 279/371 (75%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E+ L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEQEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E++EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEISELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|313893984|ref|ZP_07827550.1| GTP-binding protein YchF [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441548|gb|EFR59974.1| GTP-binding protein YchF [Veillonella sp. oral taxon 158 str.
F0412]
Length = 368
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 277/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCFED +I HV G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFEDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ LN+ E + IK+L LLT KP ++VANV+E ++AD +N HV V A +
Sbjct: 177 AKPVRAQGLNEDELEMIKELTLLTAKPSLFVANVSEDEVADYSANEHVKRVEEYAKAEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 237 GIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGK+Y++
Sbjct: 297 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKEYVM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|389855716|ref|YP_006357959.1| GTP-binding protein YchF [Streptococcus suis ST1]
gi|353739434|gb|AER20441.1| GTP-binding protein YchF [Streptococcus suis ST1]
Length = 371
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPDSISYVQQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|417091646|ref|ZP_11956452.1| GTP-binding protein YchF [Streptococcus suis R61]
gi|353532952|gb|EHC02620.1| GTP-binding protein YchF [Streptococcus suis R61]
Length = 371
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYVQQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|358011963|ref|ZP_09143773.1| GTP-binding protein YchF [Acinetobacter sp. P8-3-8]
Length = 363
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DL+ + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLETVAKAITRLAKSAKSGDKEAL--ATKAVLEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ + V
Sbjct: 178 ARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L +LG+ E GL +IR+ YSLLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G R EGK Y+VQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAGKWRLEGKTYVVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|386585208|ref|YP_006081610.1| GTP-binding protein YchF [Streptococcus suis D12]
gi|353737354|gb|AER18362.1| GTP-binding protein YchF [Streptococcus suis D12]
Length = 371
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYVQQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLIQYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|407007205|gb|EKE22929.1| hypothetical protein ACD_6C00673G0002 [uncultured bacterium]
Length = 363
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 264/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P S+EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG++
Sbjct: 60 PQRVIPTSMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLDAVAKAITRLTKSAKGGDKEAL--ATKAVLEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER ++ L+T+KP +Y+ANVAE NPH++ V LA++ + V
Sbjct: 178 ARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFE---KNPHLDAVRKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G R EGK YIVQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAGKWRLEGKTYIVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|229065134|ref|ZP_04200427.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH603]
gi|229136300|ref|ZP_04265047.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST196]
gi|229170178|ref|ZP_04297864.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH621]
gi|228613279|gb|EEK70418.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH621]
gi|228647172|gb|EEL03260.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BDRD-ST196]
gi|228716163|gb|EEL67882.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH603]
Length = 369
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 278/372 (74%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|325921465|ref|ZP_08183320.1| GTP-binding protein YchF [Xanthomonas gardneri ATCC 19865]
gi|325548012|gb|EGD19011.1| GTP-binding protein YchF [Xanthomonas gardneri ATCC 19865]
Length = 363
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPD RL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDLRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RSV L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A +
Sbjct: 175 GKAGRSVGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRAHAVTEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG++E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDEDRDTFLADLGLAEPGLNRVIRAAYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
+EGDV+ FRFNV
Sbjct: 352 KEGDVLHFRFNV 363
>gi|262372326|ref|ZP_06065605.1| translation-associated GTPase [Acinetobacter junii SH205]
gi|262312351|gb|EEY93436.1| translation-associated GTPase [Acinetobacter junii SH205]
Length = 367
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DLD + K R+ K KG KD+ A KAALEKIQ L +
Sbjct: 124 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKDAI-----ATKAALEKIQPLLDE 178
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 179 GKPARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENA 235
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +
Sbjct: 236 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVR 295
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ A+E G R EGK Y+V
Sbjct: 296 AWTVKVGATAPQAAGVIHTDFEKGFIRAECISYDDFIQYNGENGAKEAGKWRLEGKTYVV 355
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 356 QDGDVLHFRFNV 367
>gi|348025290|ref|YP_004765094.1| GTP-binding protein YchF [Megasphaera elsdenii DSM 20460]
gi|341821343|emb|CCC72267.1| GTP-binding protein YchF [Megasphaera elsdenii DSM 20460]
Length = 368
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 271/373 (72%), Gaps = 7/373 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD R+ VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVEVPDKRIQVLTDM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K +PA + FVDIAGLV GAS+GEGLGNKFLSHIRE D+I +VVRCFED++I HV+G
Sbjct: 60 YKPKKTIPAVMRFVDIAGLVAGASKGEGLGNKFLSHIRETDAIAEVVRCFEDSNITHVDG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALM 230
+DP D++ IN EL +DL+ +KR +++ AK +Q KDA E A L+K+ L
Sbjct: 120 SIDPIRDIETINTELCLADLESAQKRADRI----AKVAQCGDKDAKVEYAVLKKVLACLE 175
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G PAR L E +K+L LLT+KPIIY+ANVAE + +P +NP+V V A+
Sbjct: 176 NGDPARKAGLTKDELPQVKELNLLTLKPIIYIANVAEDEAGNPDANPNVKRVEEYAAKEG 235
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V +SA++EAE+ ELP +E +L LG+ ESGL LI+++YSLLGL +FT+G E
Sbjct: 236 AQVVAVSAKIEAEIAELPDDEAEVFLEELGLPESGLDKLIKASYSLLGLINFFTAGSDEV 295
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G A +AAG IH+D E+GFIRAE V+YDD +A GS A+EKGL+R EGKDY+
Sbjct: 296 RAWTIVNGTKAQKAAGKIHTDIERGFIRAEIVSYDDLIACGSEQTAKEKGLVRLEGKDYV 355
Query: 411 VQEGDVMLFRFNV 423
+Q+GDV FRFNV
Sbjct: 356 MQDGDVTYFRFNV 368
>gi|288574497|ref|ZP_06392854.1| GTP-binding protein YchF [Dethiosulfovibrio peptidovorans DSM
11002]
gi|288570238|gb|EFC91795.1| GTP-binding protein YchF [Dethiosulfovibrio peptidovorans DSM
11002]
Length = 363
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 272/367 (74%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+A+N+PFCTIEPNVG+V+VPD RL VLS + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITSAG-AEASNYPFCTIEPNVGVVSVPDERLSVLSKMFNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA+VEF DIAGLV+GAS+GEGLGN FLSHIREV++I+ VVRCFED++IVHV+G VDP
Sbjct: 60 KITPATVEFFDIAGLVRGASKGEGLGNTFLSHIREVNAIVHVVRCFEDDNIVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I LELV SDL+ +E+ K ++ A++ +S E K+++ L GK R
Sbjct: 120 IRDIETIELELVLSDLEMLERHKTKTER-NARNDKSLRPYLELVG--KVKENLEAGKMVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D ER ++ L LLT KP+IYVANV+E D++D N HV + A VTI
Sbjct: 177 AMDLTDDERKELRGLGLLTDKPVIYVANVSEDDVSDSEGNVHVKSLKEYADRFDCEVVTI 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++EAE+ ELP EE+ E+LA LG++ESGL L+R+ Y LLGL ++ T+GEKE++AWTI+
Sbjct: 237 CARIEAEVAELPEEEKGEFLAELGLAESGLDRLVRAGYRLLGLISFLTAGEKESRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+DFE+GFI+A+ VAYD + GSLA A+ GL+R EGKDY++Q+GDV
Sbjct: 297 RGYRAPQAAGTIHTDFERGFIKAQVVAYDALIRCGSLAEAKAGGLVRMEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 357 VEFRFNV 363
>gi|345859425|ref|ZP_08811775.1| GTPase family protein [Desulfosporosinus sp. OT]
gi|344327572|gb|EGW39000.1| GTPase family protein [Desulfosporosinus sp. OT]
Length = 366
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 280/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQVG-AEAANYPFCTIDPNVGMVEVPDSRLQKLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V A+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++++HV G V
Sbjct: 60 PKKIVSATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDDNVIHVEGNV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
+PK D++ I+LELV +D++ +EKR ++ K KA D +++ E A LE++++ GK
Sbjct: 120 NPKRDIETIDLELVLADMESVEKRADRTSKLLKAGDKKAQ---GEVALLERLKEVFNRGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARS+T D ER+ +K LLT+KP++YVANV+E+ L+ NP+V +VM +A++ +
Sbjct: 177 GARSLTYTDEEREILKGFSLLTLKPVLYVANVSEAGLSTAADNPYVQQVMAIAAEEDAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + AQ+EAE+ EL +E+ +L LG+ ESGL LIR + LLGL T+FT+G+ E +AW
Sbjct: 237 VVVCAQIEAEIAELEEDEKEVFLQDLGLEESGLDRLIRVAFHLLGLMTFFTAGQVEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIH+DFE GFIRAE VAY DFV L AREKGL+R EGK+Y++ +
Sbjct: 297 TIRQGTKAPQAAGVIHTDFEHGFIRAEVVAYKDFVEHNGLNGAREKGLVRLEGKEYMMHD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVHFRFNV 366
>gi|86160752|ref|YP_467537.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
dehalogenans 2CP-C]
gi|197124853|ref|YP_002136804.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
sp. K]
gi|85777263|gb|ABC84100.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
gi|196174702|gb|ACG75675.1| GTP-binding protein YchF [Anaeromyxobacter sp. K]
Length = 370
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 266/370 (71%), Gaps = 1/370 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA++ +A AAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNALLGAAQAAAANYPFCTIEPNVGVVPVPDARLDALSALFK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P ++EFVDIAGLV GAS+GEGLGN+FL++IREVD+I V+RCFED D+VHV GKV
Sbjct: 61 PKKTTPTTLEFVDIAGLVAGASKGEGLGNQFLANIREVDAIAHVLRCFEDPDVVHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP+ D DV+ EL+ DLD +EK+ E+ LK KA +L E AAL++++ L G
Sbjct: 121 DPRGDRDVVETELMLKDLDSVEKKRERALKNTKAAGKAGELAKLEVAALDRVKAGLEAGT 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P R+ L+D +R ++K L LLT KP++Y+ANV ES L ++P + V LA +
Sbjct: 181 PVRAQPLSDEDRAAVKDLFLLTSKPVLYIANVDESQLGKEATDPSILAVKALADAEGAPM 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V IS +VE+EL EL ER EYLASLG+ E GL L+ + Y LLGL TYFTSGE E +AW
Sbjct: 241 VEISGKVESELVELAPPERAEYLASLGLEEPGLHRLVHAGYRLLGLMTYFTSGEDECRAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G APQAAGVIH+DFEKGFI+AE + +D + + AA REKG LR EGKDY+VQ+
Sbjct: 301 TVRQGSRAPQAAGVIHTDFEKGFIKAEVIRIEDLLELKTEAACREKGKLRIEGKDYVVQD 360
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 361 GDVMHFRFNV 370
>gi|228924220|ref|ZP_04087491.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|423583645|ref|ZP_17559756.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD014]
gi|423633677|ref|ZP_17609330.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD156]
gi|228835438|gb|EEM80808.1| GTP-dependent nucleic acid-binding protein engD [Bacillus
thuringiensis serovar huazhongensis BGSC 4BD1]
gi|401209705|gb|EJR16464.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD014]
gi|401282744|gb|EJR88642.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD156]
Length = 366
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 278/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDVMDPSENKYVKMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y+LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYNLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|229014641|ref|ZP_04171755.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
DSM 2048]
gi|423416614|ref|ZP_17393703.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-1]
gi|228746652|gb|EEL96541.1| GTP-dependent nucleic acid-binding protein engD [Bacillus mycoides
DSM 2048]
gi|401109998|gb|EJQ17914.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG3X2-1]
Length = 366
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|220919571|ref|YP_002494875.1| GTP-dependent nucleic acid-binding protein EngD [Anaeromyxobacter
dehalogenans 2CP-1]
gi|219957425|gb|ACL67809.1| GTP-binding protein YchF [Anaeromyxobacter dehalogenans 2CP-1]
Length = 370
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 213/370 (57%), Positives = 266/370 (71%), Gaps = 1/370 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKSTLFNA++ +A AAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MGLSIGIVGLPNVGKSTLFNALLGAAQAAAANYPFCTIEPNVGVVPVPDARLDALSALFK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K P ++EFVDIAGLV GAS+GEGLGN+FL++IREVD+I V+RCFED D+VHV GKV
Sbjct: 61 PKKTTPTTLEFVDIAGLVAGASKGEGLGNQFLANIREVDAIAHVLRCFEDPDVVHVAGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP+ D DV+ EL+ DLD +EK+ E+ LK KA +L E AAL++++ L G
Sbjct: 121 DPRGDRDVVETELMLKDLDSVEKKRERALKNTKAAGKAGELAKLEVAALDRVKAGLEAGT 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P R+ L+D +R ++K L LLT KP++Y+ANV ES L ++P + V LA +
Sbjct: 181 PVRAQPLSDDDRAAVKDLFLLTSKPVLYIANVDESQLGKEATDPSILAVKALADAEGAPM 240
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V IS +VE+EL EL ER EYLASLG+ E GL L+ + Y LLGL TYFTSGE E +AW
Sbjct: 241 VEISGKVESELVELAPPERAEYLASLGLEEPGLHRLVHAGYRLLGLMTYFTSGEDECRAW 300
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G APQAAGVIH+DFEKGFI+AE + +D + + AA REKG LR EGKDY+VQ+
Sbjct: 301 TVRQGSRAPQAAGVIHTDFEKGFIKAEVIRIEDLLELKTEAACREKGKLRIEGKDYVVQD 360
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 361 GDVMHFRFNV 370
>gi|85708580|ref|ZP_01039646.1| GTPase [Erythrobacter sp. NAP1]
gi|85690114|gb|EAQ30117.1| GTPase [Erythrobacter sp. NAP1]
Length = 366
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 268/371 (72%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL ++ ++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVAVPDERLDKIAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K + + FVDIAGLVKGASQGEGLGN+FL +IREVD+I+ V+RCFED+DI HV+ KV
Sbjct: 61 SAKVIATQLAFVDIAGLVKGASQGEGLGNQFLGNIREVDAIVHVLRCFEDDDIQHVSNKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D +V+ EL+ +DL+ +EKR+ K+ A D ++K+ + L + + L DGK
Sbjct: 121 DPIADAEVVETELMLADLESLEKRVSNAEKRATAGDKEAKIM---ASVLGQALELLKDGK 177
Query: 234 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR V D E + + KQ LLT KP++YV NVAE + A N V A +
Sbjct: 178 PARLVEPKDVEEERVLKQAQLLTAKPVLYVCNVAEDEAAS--GNALSQAVFAKAEAEGAQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V +SA +EAEL E+P+E+R EYL SLG+ ESGL +IR+ Y+LLGL+T+FT+G KE++A
Sbjct: 236 AVVVSAAIEAELVEMPAEDRAEYLESLGLEESGLARVIRAGYTLLGLKTFFTAGPKESRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT G APQAAG IH+DFEKGFIRAET+AYDD++A G A A+E G +R EGKDY V+
Sbjct: 296 WTFPDGAKAPQAAGEIHTDFEKGFIRAETIAYDDYIALGGEAGAKEAGKMRQEGKDYDVK 355
Query: 413 EGDVMLFRFNV 423
+GD+MLF+FNV
Sbjct: 356 DGDIMLFKFNV 366
>gi|163943155|ref|YP_001648039.1| GTP-dependent nucleic acid-binding protein EngD [Bacillus
weihenstephanensis KBAB4]
gi|423369437|ref|ZP_17346868.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD142]
gi|423513074|ref|ZP_17489604.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-1]
gi|423520132|ref|ZP_17496613.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-4]
gi|163865352|gb|ABY46411.1| GTP-binding protein YchF [Bacillus weihenstephanensis KBAB4]
gi|401077874|gb|EJP86201.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD142]
gi|401156725|gb|EJQ64128.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-4]
gi|402446117|gb|EJV77980.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA2-1]
Length = 366
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|299820864|ref|ZP_07052753.1| GTP-binding protein YchF [Listeria grayi DSM 20601]
gi|299817885|gb|EFI85120.1| GTP-binding protein YchF [Listeria grayi DSM 20601]
Length = 366
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 271/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDNRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ INLEL+ +DL+ +EKR +++K K KD ++ + E L K+++A ++
Sbjct: 120 DPIDDITTINLELILADLESVEKRFSRVEKLAKQKDKEAVI---EFNVLTKLKEAFLNDL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V N+ E ++ L LLT KP++YVANV+E +++DP +N +V V A+ S
Sbjct: 177 PARTVEFNEEEEKVVRNLFLLTRKPVLYVANVSEEEVSDPDNNKYVQAVREFAAKENSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+ E E+ EL +++ E+L +LG+ ESGL LIRS YSLLGL TYFT+G +E +AW
Sbjct: 237 IVVCARAEEEIAELEDDDKAEFLEALGIEESGLDKLIRSAYSLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM APQ AG+IH+DFE+GFIRAE VAYD V GS AA+E G +R EGK+Y +++
Sbjct: 297 TFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALVEYGSEHAAKEAGKVRLEGKEYEMKD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVVHFRFNV 366
>gi|160880614|ref|YP_001559582.1| GTP-binding protein YchF [Clostridium phytofermentans ISDg]
gi|160429280|gb|ABX42843.1| GTP-binding protein YchF [Clostridium phytofermentans ISDg]
Length = 365
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/369 (56%), Positives = 275/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PN+GIV VPD RL VLS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNIGIVPVPDVRLKVLSDLYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +I+HV+G VDP
Sbjct: 60 KILPAAIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDGNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R K+ KG D KL E L +++ L DGK A+
Sbjct: 120 LRDIETINLELIFSDLEILERRNSKVVKGAKND---KLLAKEAELLTRLKAHLEDGKLAK 176
Query: 237 S-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
VT ++ E + + LLT KP+IY ANV + +LAD N V +V A + S
Sbjct: 177 GFVTEDEEELEMLSSYNLLTYKPVIYAANVKDDELADDAKDNQFVGQVREFAKNENSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +E+ +L LG++ESGL LIR++Y +LGL +Y T+G KET+AWT
Sbjct: 237 VICAQIEQEIAELDDDEKKMFLEELGLTESGLEKLIRASYHILGLISYLTAGPKETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I GM APQAAG IH+DFE+GFIRAE V+YD+ V GS +A+EKGL+RSEGK+Y+VQ+G
Sbjct: 297 ITKGMKAPQAAGKIHTDFERGFIRAEIVSYDNLVGCGSFNSAKEKGLVRSEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|402758805|ref|ZP_10861061.1| GTP-binding protein YchF [Acinetobacter sp. NCTC 7422]
Length = 363
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL--ATKAVLEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ + V
Sbjct: 178 ARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ + A+E G R EGK Y+VQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQYNGESGAKEAGKWRLEGKTYVVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|167769139|ref|ZP_02441192.1| hypothetical protein ANACOL_00462 [Anaerotruncus colihominis DSM
17241]
gi|167668779|gb|EDS12909.1| GTP-binding protein YchF [Anaerotruncus colihominis DSM 17241]
Length = 365
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 277/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPD RL L+ L
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGMVAVPDSRLDALAKLYDPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLV+GAS+GEGLGNKFLSHIREVD+++ VVRCFED +IVHV+G++ P
Sbjct: 60 KFTPAVIEFVDIAGLVRGASKGEGLGNKFLSHIREVDAVVHVVRCFEDGEIVHVDGEIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
+ D++ I LEL+FSD+D +++++++ LK K D K A+ L +++ L +GKPA
Sbjct: 120 RRDIETIGLELIFSDIDIVDRKIDRSLKAAKGGD---KALAAQADTLRRLKAHLEEGKPA 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
RS + ER ++ + LL+ KP+IY AN++E D SN NEV +A+ + +
Sbjct: 177 RSFDCDGEERAALDDMPLLSAKPVIYAANMSEFDFTSGIKSNKFYNEVEEIAASEHAEVL 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E+T++P E+++ +L +G+ ESGL LI+ +Y LLGL +Y T+G++E +AWT
Sbjct: 237 PICAKIEEEITDMPPEDKLLFLEEMGLHESGLDRLIKKSYDLLGLISYLTAGKQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAG IHSDFEKGFIRAE V++D+ +A GS+AAA+EKGL+RSEGKDY++Q+G
Sbjct: 297 ITKGTKAPQAAGKIHSDFEKGFIRAEIVSFDELMACGSMAAAKEKGLVRSEGKDYVMQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|302671228|ref|YP_003831188.1| GTP-binding protein YchF [Butyrivibrio proteoclasticus B316]
gi|302395701|gb|ADL34606.1| GTP-binding protein YchF [Butyrivibrio proteoclasticus B316]
Length = 365
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ N A AAN+PF TI+PNVG+VAVPD RL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLT-NAGALAANYPFATIDPNVGVVAVPDKRLKALGDLYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIRETDAIVHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+F+DL+ +E+R+ K+ K A+ ++ K+ E L KI+ L D K AR
Sbjct: 120 ARDIETINLELIFADLEVLERRIAKVTK-TARMDKTAAKELE--LLNKIKATLEDNKMAR 176
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
+ + D E+ + + LLT KP+IY ANV + DLAD G SN +V V +LA+ S
Sbjct: 177 ELEIEDEDEKALMNSMDLLTWKPVIYAANVKDDDLADDGASNQYVQAVRDLAAKSGSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ+EAE++EL +E+ E+L SLG++ESGL LI ++Y LGL ++ TSGE ET+AWT
Sbjct: 237 VISAQIEAEISELDEDEKAEFLDSLGLTESGLDKLIAASYRTLGLMSFLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE + Y+D + GSL+AAR+KGL+R EGK+Y+VQ+G
Sbjct: 297 IKIGTKAPQAAGKIHTDFERGFIKAEVINYEDLLREGSLSAARDKGLVRMEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|253750929|ref|YP_003024070.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
SC84]
gi|253752828|ref|YP_003025968.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
P1/7]
gi|253754653|ref|YP_003027793.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
BM407]
gi|386578986|ref|YP_006075391.1| GTP-binding protein [Streptococcus suis JS14]
gi|386581053|ref|YP_006077457.1| GTP-binding protein [Streptococcus suis SS12]
gi|386587287|ref|YP_006083688.1| GTP-binding protein [Streptococcus suis A7]
gi|403060709|ref|YP_006648925.1| GTP-binding protein YchF [Streptococcus suis S735]
gi|251815218|emb|CAZ50782.1| putative GTP-binding protein [Streptococcus suis SC84]
gi|251817117|emb|CAZ54838.1| putative GTP-binding protein [Streptococcus suis BM407]
gi|251819073|emb|CAR44087.1| putative GTP-binding protein [Streptococcus suis P1/7]
gi|319757178|gb|ADV69120.1| GTP-binding protein [Streptococcus suis JS14]
gi|353733199|gb|AER14209.1| GTP-binding protein [Streptococcus suis SS12]
gi|354984448|gb|AER43346.1| GTP-binding protein [Streptococcus suis A7]
gi|402808035|gb|AFQ99526.1| GTP-binding protein YchF [Streptococcus suis S735]
Length = 371
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/373 (55%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELII 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP + +V ++ + A+
Sbjct: 179 DGKSARTVEFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPEAISYVQQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|409911214|ref|YP_006889679.1| GTP-dependent translational factor YchF [Geobacter sulfurreducens
KN400]
gi|298504780|gb|ADI83503.1| GTP-dependent translational factor YchF, putative [Geobacter
sulfurreducens KN400]
Length = 364
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 272/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDVRLDRLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D+I EL +DLD ++K++++++K +AK +LK+ E +++ AL G P
Sbjct: 120 DPLRDIDIIQTELALADLDSVDKKLQRVEK-QAKSGDKRLKE-ESEFYARLKAALEQGIP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V + D E ++ L LLT KP++YVANVAE DL G++P V +V LA + V
Sbjct: 178 ARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDL--DGAHPAVAKVRELAEREGARVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI ++EAE+ EL +E+ +L +G++ESGL LIR Y LLGL TYFT+G+KE +AWT
Sbjct: 236 TICGRIEAEIAELEGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIH+DFEKGFIRAE +AY D++AAG A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 IPTGTKAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|39995770|ref|NP_951721.1| GTP-binding protein YchF [Geobacter sulfurreducens PCA]
gi|39982534|gb|AAR33994.1| GTP-dependent translational factor YchF, putative [Geobacter
sulfurreducens PCA]
Length = 364
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 272/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDVRLDRLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGASQGEGLGN+FL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFVDIAGLVKGASQGEGLGNQFLGHIRSVDAIVHVVRCFEDENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D+I EL +DLD ++K++++++K +AK +LK+ E +++ AL G P
Sbjct: 120 DPLRDIDIIQTELALADLDSVDKKLQRVEK-QAKSGDKRLKE-ESEFYARLKAALEQGIP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR V + D E ++ L LLT KP++YVANVAE DL G++P V +V LA + V
Sbjct: 178 ARHVQVADEELPWLRDLHLLTDKPVLYVANVAEDDL--DGAHPAVAKVRELAEREGARVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI ++EAE+ EL +E+ +L +G++ESGL LIR Y LLGL TYFT+G+KE +AWT
Sbjct: 236 TICGRIEAEIAELDGDEKRVFLEEMGLAESGLDRLIRMGYELLGLITYFTAGKKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIH+DFEKGFIRAE +AY D++AAG A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 IPTGTKAPQAAGVIHTDFEKGFIRAEVIAYADYIAAGGETGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|381210650|ref|ZP_09917721.1| GTP-binding protein YchF [Lentibacillus sp. Grbi]
Length = 366
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 280/369 (75%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ LS L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDNRLNKLSELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I+QVVRCF++++I HV+GK+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAIVQVVRCFQNDNITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ INLEL+ +DL+ + KR+++++K + + + AE LEK+++ L P
Sbjct: 120 DPVDDIETINLELILADLETVNKRLQRVEKMARQKEKEAV--AEYNLLEKLKEGLEAELP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ ++ + +K L LLT KP +Y ANV+E D+ADP +N V V A++ + +
Sbjct: 178 VRALEFSEDQWKLVKGLHLLTSKPALYAANVSEDDVADPEANEAVQRVREYAANENAEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E+ EL +EE+ +L LG++E+GL LI+++Y+LLGL TYFT+GE E +AWT
Sbjct: 238 VVCAKIEEEVAELDAEEKEMFLDDLGIAEAGLDQLIKASYNLLGLGTYFTAGEPEVRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
G+ APQAAG+IH+DFE+GFIRAETV+Y+D + AG+++ AR+ G +R EGK+YIVQ+G
Sbjct: 298 FPKGIKAPQAAGIIHTDFERGFIRAETVSYEDLMEAGTMSKARDNGRVRLEGKEYIVQDG 357
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 358 DVIHFRFNV 366
>gi|310659210|ref|YP_003936931.1| putative GTP-binding protein [[Clostridium] sticklandii]
gi|308825988|emb|CBH22026.1| putative GTP-binding protein [[Clostridium] sticklandii]
Length = 365
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 281/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL L+ L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNVGVVAVPDDRLEKLAELYESK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED+++VHV+G V+P
Sbjct: 60 KLVPTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDSNVVHVDGDVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K +K D K AE ++ + L GK AR
Sbjct: 120 IRDIETINLELIFSDMEMLERRLAKSQKAAKSD---KALAAEVDLIKTVLDTLESGKSAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ L+D E+ +K LL+ KPIIYVANV+E ++AD NP+V +V A + V
Sbjct: 177 TLDLSDDEKAVVKSFNLLSSKPIIYVANVSEEEVADDAKDNPYVKQVREFAQTEDAEVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
+SA++E E+++ EE++E+L +G+ +SGL LI+++Y LLGL ++ T+G E++AWTI
Sbjct: 237 VSAKIEEEISQFDKEEKIEFLKDMGLDKSGLDKLIQASYKLLGLISFLTAGPMESRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLLRSEGKDYIVQEG 414
+ G APQA G IHSD E+GFIRAET+++DD V G++A+A+EKGL+RSEGK+Y++++G
Sbjct: 297 KDGTKAPQAGGKIHSDIERGFIRAETISFDDLVVHGGNMASAKEKGLVRSEGKEYVMKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|168830300|gb|ACA34397.1| YchF [uncultured bacterium pTW2]
Length = 363
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 275/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIQCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN ++
Sbjct: 60 PQKVIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNRI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DL+ ++K R E+ K KD++++++ L +++ L
Sbjct: 120 DPIADIETIDTELALADLESVDKALQRAERTAKTGDKDARARVE-----VLARVRAGLDA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR++ L+D +R +I+ L LLT+KP++YVANV E +D NPH++ V A +
Sbjct: 175 GKPARALGLSDEDRAAIRDLFLLTLKPVMYVANVLEDGFSD---NPHLDAVRARALGEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L E+R +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLEDEDRDAFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAA VIH+DFEKGFIRAET+ +DDF+ + AR+ G LR EGK+Y V
Sbjct: 292 AWTVKGGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGESGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|227891376|ref|ZP_04009181.1| GTP-binding translation factor YchF [Lactobacillus salivarius ATCC
11741]
gi|417787692|ref|ZP_12435375.1| GTP-binding and nucleic acid-binding protein YchF [Lactobacillus
salivarius NIAS840]
gi|417809551|ref|ZP_12456232.1| GTP-binding translation factor YchF [Lactobacillus salivarius
GJ-24]
gi|418960795|ref|ZP_13512682.1| GTP-binding protein YchF [Lactobacillus salivarius SMXD51]
gi|227866765|gb|EEJ74186.1| GTP-binding translation factor YchF [Lactobacillus salivarius ATCC
11741]
gi|334307869|gb|EGL98855.1| GTP-binding and nucleic acid-binding protein YchF [Lactobacillus
salivarius NIAS840]
gi|335350475|gb|EGM51971.1| GTP-binding translation factor YchF [Lactobacillus salivarius
GJ-24]
gi|380344462|gb|EIA32808.1| GTP-binding protein YchF [Lactobacillus salivarius SMXD51]
Length = 366
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L +
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV-----AEFAVLQKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D S
Sbjct: 175 GKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKKFAEDEGS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET+
Sbjct: 235 QALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G LR EGK+Y V
Sbjct: 295 AWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAGRLRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|126700276|ref|YP_001089173.1| GTP-binding protein YchF [Clostridium difficile 630]
gi|254976255|ref|ZP_05272727.1| putative GTP-binding protein [Clostridium difficile QCD-66c26]
gi|255093641|ref|ZP_05323119.1| putative GTP-binding protein [Clostridium difficile CIP 107932]
gi|255101830|ref|ZP_05330807.1| putative GTP-binding protein [Clostridium difficile QCD-63q42]
gi|255307697|ref|ZP_05351868.1| putative GTP-binding protein [Clostridium difficile ATCC 43255]
gi|255315390|ref|ZP_05356973.1| putative GTP-binding protein [Clostridium difficile QCD-76w55]
gi|255518055|ref|ZP_05385731.1| putative GTP-binding protein [Clostridium difficile QCD-97b34]
gi|255651171|ref|ZP_05398073.1| putative GTP-binding protein [Clostridium difficile QCD-37x79]
gi|260684237|ref|YP_003215522.1| GTP-binding protein [Clostridium difficile CD196]
gi|260687896|ref|YP_003219030.1| GTP-binding protein [Clostridium difficile R20291]
gi|306521018|ref|ZP_07407365.1| putative GTP-binding protein [Clostridium difficile QCD-32g58]
gi|384361879|ref|YP_006199731.1| GTP-binding protein YchF [Clostridium difficile BI1]
gi|423081341|ref|ZP_17069949.1| GTP-binding protein YchF [Clostridium difficile 002-P50-2011]
gi|423084600|ref|ZP_17073100.1| GTP-binding protein YchF [Clostridium difficile 050-P50-2011]
gi|423092700|ref|ZP_17080504.1| GTP-binding protein YchF [Clostridium difficile 70-100-2010]
gi|115251713|emb|CAJ69548.1| putative GTP-binding protein [Clostridium difficile 630]
gi|260210400|emb|CBA64799.1| putative GTP-binding protein [Clostridium difficile CD196]
gi|260213913|emb|CBE05961.1| putative GTP-binding protein [Clostridium difficile R20291]
gi|357551007|gb|EHJ32811.1| GTP-binding protein YchF [Clostridium difficile 002-P50-2011]
gi|357552170|gb|EHJ33945.1| GTP-binding protein YchF [Clostridium difficile 050-P50-2011]
gi|357553570|gb|EHJ35317.1| GTP-binding protein YchF [Clostridium difficile 70-100-2010]
Length = 365
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+ L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDERLNKLQELYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K +K D K +E L+ I L + K R
Sbjct: 120 LRDIETINLELIFSDIEILERRINKTQKAAKAD---KTLGSELDLLKSIMSTLEESKCVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ + E+ + L LLT KP+IY +NV+E DLAD G +N +V +V A + V
Sbjct: 177 TMEFTEDEQTFVNSLDLLTSKPVIYASNVSEDDLADNGENNKYVQQVKAFAETEDAEVVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+Y+LLGL ++ T+G KE +AWT
Sbjct: 237 VCAQIEAEISELDSAEEKKEFLETLGLEQSGLDKLIKSSYALLGLISFLTAGPKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQA G IHSD E+GFIRAET+A++D V G++AAA+EKGL++ EGK+YIV++G
Sbjct: 297 IKVGSKAPQAGGKIHSDIERGFIRAETIAFNDLVEHGTMAAAKEKGLVKLEGKEYIVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|224003407|ref|XP_002291375.1| GTP binding protein [Thalassiosira pseudonana CCMP1335]
gi|220973151|gb|EED91482.1| GTP binding protein [Thalassiosira pseudonana CCMP1335]
Length = 363
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 272/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ IVGLPNVGKSTLFNA+ E A+AAN+PFCTIEPN GIV VPD RL VL ++
Sbjct: 1 MKLQTAIVGLPNVGKSTLFNALTETQGAEAANYPFCTIEPNTGIVEVPDIRLEVLGKINN 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP ++EFVD+AGLVKGAS GEGLGN+FL+ IR+ D+I+ VVRCFED +++HV+G V
Sbjct: 61 SVKVVPTTLEFVDVAGLVKGASDGEGLGNQFLATIRQCDAIVHVVRCFEDENVIHVDGTV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D ++INLEL +DL Q+EKRM K+KK + DS AE +ALEK+ L + +P
Sbjct: 121 DPVRDAELINLELALADLAQVEKRMLKVKKERKMDS------AEGSALEKVAAVLNNDEP 174
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L++ E SI+ L LLT K +IY ANVA+SDLA N + A+ + V
Sbjct: 175 ARNADLSEEEDASIRGLGLLTRKKMIYAANVADSDLAT--GNDMSERLAEQAAKEGATMV 232
Query: 295 TISAQVEAELTELPSEERVEYLASLGVS--ESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+SAQVEAEL +L +++R ++L SLGV+ + GL +IR YS+L L+TYFTSG ET+A
Sbjct: 233 LVSAQVEAELVDLDADDRADFLDSLGVTIDDCGLRRVIREAYSILNLQTYFTSGPTETRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G APQAAGVIH DFE+GFIRAET++Y+D V GS A +++G LRSEGK+Y+V+
Sbjct: 293 WTIGKGWKAPQAAGVIHGDFERGFIRAETISYEDLVDCGSEAEVKKQGKLRSEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
EGDV+LFRFNV
Sbjct: 353 EGDVILFRFNV 363
>gi|342213709|ref|ZP_08706428.1| GTP-binding protein YchF [Veillonella sp. oral taxon 780 str.
F0422]
gi|341597297|gb|EGS39856.1| GTP-binding protein YchF [Veillonella sp. oral taxon 780 str.
F0422]
Length = 368
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 273/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVAGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
VDP D+++IN EL +DL+ ++KR++++ K K+ D +++ E LEK+ AL D
Sbjct: 120 SVDPVRDIEIINTELCLADLESVDKRLQRIAKLAKSGDKDARM---EAPILEKVSAALGD 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
P R+ L D E + +K L LLT K +YVANV E +++D N V +V + A+ S
Sbjct: 177 AIPVRAQGLTDDELEILKDLTLLTAKKSLYVANVGEDEVSDYSGNEFVKQVEDYAAKEGS 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +LA LG+ ESGL LI+++YSLLGL YFT+GE E +
Sbjct: 237 GVVVVSARIESEIAELSDEEATAFLADLGLEESGLTKLIKASYSLLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDYI+
Sbjct: 297 AWTIVEGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLEACGSQNAAKEKGLVRLEGKDYIM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|260585088|ref|ZP_05852829.1| GTP-binding protein YchF [Granulicatella elegans ATCC 700633]
gi|260157176|gb|EEW92251.1| GTP-binding protein YchF [Granulicatella elegans ATCC 700633]
Length = 366
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/371 (57%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDERLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D++ INLELV +DL+ ++KR+ ++ AK +++K KDA E A LEKI+ L DG
Sbjct: 120 DPIADIETINLELVLADLESVDKRIARV----AKIAKTKDKDAVAELAVLEKIKPVLEDG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+ AR++ D E +K L LLT KP++Y+AN++E D+A+ G N +V V A+ +
Sbjct: 176 QLARTIEFTDEELPIVKGLFLLTTKPMLYIANISEDDVAEGGHNQYVQLVEEYAAKEDAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A+VE E+ EL EE+ +L +G+ SGL LI+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VVVICARVEEEVAELEEEEKQVFLEEMGIETSGLDILIQKAYHLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT R GM APQ AG+IHSDFE+GFIRAETVAY D + GS+ AA+E G +R EGK+YIVQ
Sbjct: 296 WTFRRGMKAPQCAGIIHSDFERGFIRAETVAYADLLEFGSMGAAKENGKVRQEGKEYIVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|226953006|ref|ZP_03823470.1| translation-associated GTPase [Acinetobacter sp. ATCC 27244]
gi|294650594|ref|ZP_06727951.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
haemolyticus ATCC 19194]
gi|226836327|gb|EEH68710.1| translation-associated GTPase [Acinetobacter sp. ATCC 27244]
gi|292823591|gb|EFF82437.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
haemolyticus ATCC 19194]
Length = 363
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K A K A KAALEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTK--AAKGGDKEAIATKAALEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++ + V
Sbjct: 178 ARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ A+E G R EGK Y+VQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECISYDDFIQYNGENGAKEAGKWRLEGKTYVVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|220928042|ref|YP_002504951.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
cellulolyticum H10]
gi|219998370|gb|ACL74971.1| GTP-binding protein YchF [Clostridium cellulolyticum H10]
Length = 365
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 201/368 (54%), Positives = 278/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL L+ +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDTLTKMYNPD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED++IVHV+G + P
Sbjct: 60 KTTPTVIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDSNIVHVDGSIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
K D++ INLEL+FSDL+ I++R+++ KK K+ D + ++ E E I+ L GKP
Sbjct: 120 KRDIETINLELIFSDLEMIDRRIDRTKKLLKSGDKKFQI---EMELYESIKAHLESGKPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
RS++ + ++ ++QL L+T+KP++Y ANV+E DL+ SN + E+ +A++ S +
Sbjct: 177 RSMSFDQEQQQLVEQLFLITLKPVLYAANVSEEDLSSLDSNRFLAELKEVAAEENSEVMV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E E+ +L EE+ ++L ++G+ ESGL LI+++Y +LGL +Y T+G++E +AWTI
Sbjct: 237 ICAKIEEEIAQLEDEEKEDFLEAMGLEESGLDKLIKASYKILGLISYLTAGQQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IHSDFE+GFIRAE VAYDD + GS A+EKGL+RSEGK+Y++ +GD
Sbjct: 297 TNGTKAPQAAGKIHSDFERGFIRAEIVAYDDLINCGSYTVAKEKGLVRSEGKEYVMHDGD 356
Query: 416 VMLFRFNV 423
V LFRFNV
Sbjct: 357 VTLFRFNV 364
>gi|423595351|ref|ZP_17571381.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD048]
gi|401222027|gb|EJR28629.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
VD048]
Length = 366
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L +++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVHLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSDNKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+YDD + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYDDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|223933457|ref|ZP_03625442.1| GTP-binding protein YchF [Streptococcus suis 89/1591]
gi|302023113|ref|ZP_07248324.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus suis
05HAS68]
gi|330831855|ref|YP_004400680.1| GTP-binding protein YchF [Streptococcus suis ST3]
gi|386583133|ref|YP_006079536.1| GTP-binding protein YchF [Streptococcus suis D9]
gi|223897895|gb|EEF64271.1| GTP-binding protein YchF [Streptococcus suis 89/1591]
gi|329306078|gb|AEB80494.1| GTP-binding protein YchF [Streptococcus suis ST3]
gi|353735279|gb|AER16288.1| GTP-binding protein YchF [Streptococcus suis D9]
Length = 371
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V D E+ +KQL LLT KP++YVANV E +ADP S ++ ++ + A+
Sbjct: 179 DGKSARTVDFTDEEQKIVKQLFLLTTKPVLYVANVDEDKVADPESISYIQKIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQCAGIIHSDFEKGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|193213388|ref|YP_001999341.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobaculum
parvum NCIB 8327]
gi|193086865|gb|ACF12141.1| GTP-binding protein YchF [Chlorobaculum parvum NCIB 8327]
Length = 363
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 217/369 (58%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPD RL L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDKRLGELASVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA +E VDIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFED+DIVHV GK+
Sbjct: 60 TPVIVPAVLEIVDIAGLVKGASKGEGLGNQFLSHIREVDAIIHVVRCFEDSDIVHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ I EL+ +DLD +EKRM+KL+K A+ + L + A EKI L DG P
Sbjct: 120 DPVDDIATIETELMLADLDSMEKRMDKLRK-NARKEKELLPLVDLA--EKIIAGLGDGVP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R +T D ER+ +Q LLT KPI+Y ANVAE+DL P N + +V +A+ + +
Sbjct: 177 VRRITETDEEREQARQFFLLTSKPILYAANVAENDL--PEGNDYSAKVAEIAAANGANML 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+ EA++ ELP EER E+L SLG+ SGL LIR Y LLGL YFT+G KE AWT
Sbjct: 235 VISAKAEADIAELPEEERPEFLESLGLEMSGLDRLIREAYDLLGLHNYFTAGVKEVHAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+AA IH+DFEKGFIRAE +AYDD ++ GS A+E G +RSEGK+YIV++G
Sbjct: 295 IRKGAAAPEAAAAIHTDFEKGFIRAEVIAYDDLISLGSEQKAKEAGKMRSEGKEYIVKDG 354
Query: 415 DVMLFRFNV 423
DV++FRFNV
Sbjct: 355 DVIVFRFNV 363
>gi|385841055|ref|YP_005864379.1| GTP-binding protein [Lactobacillus salivarius CECT 5713]
gi|300215176|gb|ADJ79592.1| GTP-binding protein, probable translation factor [Lactobacillus
salivarius CECT 5713]
Length = 366
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L +
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV-----AEFAVLQKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D S
Sbjct: 175 GKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKRFAEDEGS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET+
Sbjct: 235 QALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G LR EGK+Y V
Sbjct: 295 AWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAGRLRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|357236157|ref|ZP_09123500.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
criceti HS-6]
gi|356884139|gb|EHI74339.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
criceti HS-6]
Length = 371
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 275/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDSRLQKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 GAFVDPLADIDTINLELILADLESINKRYARVEK-IARTQKDKDSIAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V + E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTVEFTEEEQKIVKGLFLLTAKPVLYVANVNEDQVADPDSINYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G+SESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEAMGLSESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLITYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|222152191|ref|YP_002561351.1| GTP-binding protein [Macrococcus caseolyticus JCSC5402]
gi|222121320|dbj|BAH18655.1| GTP-binding protein [Macrococcus caseolyticus JCSC5402]
Length = 366
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDHRLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR FED +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
+P D++VIN+ELV +DL+ +EKR ++K+ K K KD+ AE+A L +++ L
Sbjct: 120 NPVDDIEVINMELVLADLESVEKRYARVQKMAKQKDKDAM-----AEEAVLAIVKETLEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP RS+ + + +K + LLT KP++YVANV+E DL N H+ + A S
Sbjct: 175 EKPVRSIEFSPEQAKLVKNMHLLTAKPMLYVANVSEDDLISGEENEHLQAIKAYAEAEGS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ ISA++E EL L E++ EYL LG+ E+GL LIR++Y LLGL TYFT+G +E +
Sbjct: 235 DVIVISAKIEEELATLEDEDKAEYLEDLGIEEAGLDKLIRASYHLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GMTAPQ AG+IH+DFE+GFIRAETV+YDD + ++ A+E G +R EGK+YI+
Sbjct: 295 AWTFKKGMTAPQCAGIIHTDFERGFIRAETVSYDDLIEYNGMSGAKEAGKVRLEGKEYIM 354
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 355 QDGDVVHFRFNV 366
>gi|423461745|ref|ZP_17438541.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X2-1]
gi|423484502|ref|ZP_17461191.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-2]
gi|401134978|gb|EJQ42584.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG5X2-1]
gi|401137963|gb|EJQ45538.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-2]
Length = 366
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|229035133|ref|ZP_04189079.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1271]
gi|228728199|gb|EEL79229.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
AH1271]
Length = 369
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 278/372 (74%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENS 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|294666033|ref|ZP_06731295.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
gi|292604225|gb|EFF47614.1| GTP-binding protein [Xanthomonas fuscans subsp. aurantifolii str.
ICPB 10535]
Length = 363
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLNQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD + K R E+ KG KD+ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVGKALNRAERSAKGGDKDAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK R+ L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKAGRAAGLDEEEKALVRDLFLLTLKPVLYIANVLEDGFEN---NPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +L LG+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDSFLTDLGLEEPGLNRVIRAAYTLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+ +DDF+ AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIGFDDFIKYRGETGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|423399688|ref|ZP_17376861.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-2]
gi|423479622|ref|ZP_17456337.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-1]
gi|401657809|gb|EJS75314.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG2X1-2]
gi|402425217|gb|EJV57372.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
BAG6X1-1]
Length = 366
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 277/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|406671619|ref|ZP_11078858.1| GTP-binding protein YchF [Facklamia hominis CCUG 36813]
gi|405580869|gb|EKB54928.1| GTP-binding protein YchF [Facklamia hominis CCUG 36813]
Length = 366
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 269/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDERLENIAKIYH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P +VEF DIAG+VKGAS+GEGLGNKFL++IR+VD+I QVVRCFED +I HV GK+
Sbjct: 60 PQRILPTTVEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICQVVRCFEDPNITHVTGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ +EKR+ K++K K KD ++ L E L K++ AL +
Sbjct: 120 DPIDDIETINLELILADLETVEKRLAKVQKIAKTKDKEAVL---EYEVLIKVKDALERNQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
A S+ + ++ L LLT K ++Y+AN++E + +P SNP++ EV LA +
Sbjct: 177 LANSLEFYPEQEPYVRNLFLLTRKKMLYIANISEEEAGNPESNPYLKEVEELAHSQGAQV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA++E E+ E EE+ L+ G+ ESGL LIRS Y LLGL TYFT+GEKE +AW
Sbjct: 237 VPISARIEEEIAEFDDEEKESLLSDYGIKESGLDRLIRSVYHLLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM APQAAGVIHSDFE+GFIRAET++Y+D + GS A +E G RSEGK+Y+VQ+
Sbjct: 297 TFHQGMKAPQAAGVIHSDFERGFIRAETMSYEDLMTYGSEQAVKEAGHYRSEGKEYLVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|269797388|ref|YP_003311288.1| GTP-binding protein YchF [Veillonella parvula DSM 2008]
gi|269094017|gb|ACZ24008.1| GTP-binding protein YchF [Veillonella parvula DSM 2008]
Length = 368
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 278/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV G
Sbjct: 60 FSSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVAG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ L++ E + IK+L LLT KP +YVAN++E +++D +N +V V A + +
Sbjct: 177 AKPVRAQGLDEDELEMIKELTLLTAKPSLYVANISEDEVSDYSANEYVKRVEEYAKNEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 237 GIVVVSARIESEIAELSDEESAAFLEDLGLDESGLTKLIKASYALLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDY++
Sbjct: 297 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|317133094|ref|YP_004092408.1| GTP-binding protein YchF [Ethanoligenens harbinense YUAN-3]
gi|315471073|gb|ADU27677.1| GTP-binding protein YchF [Ethanoligenens harbinense YUAN-3]
Length = 364
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/368 (57%), Positives = 268/368 (72%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N A++AN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAIT-NAGAESANYPFCTIEPNVGVVAVPDERLKVLTDMYHAV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFE D++HV G VDP
Sbjct: 60 KTTPAVVEFVDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEGTDVIHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K K ++E LE+++ AL G PAR
Sbjct: 120 VRDMETINLELIFSDLEMVERRL---DKDKKLLKGDKKYESEIVLLERVKAALESGLPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRVT 295
SV + + + LL+ KP+IY AN++E D A NPH + A +G +
Sbjct: 177 SVERTPEDDAVLATVALLSEKPVIYAANLSEEDFKAGYEKNPHFTRLRAQAEKEGAGVLP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E EL+ + EE+ +LA LG+ +SGL LIR +Y+LLGL +Y T+GE E +AWTI
Sbjct: 237 ICAKIEEELSSMDEEEKDLFLADLGLEQSGLDRLIRESYALLGLISYLTAGEPEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IH+DFE+GFIRAE VAYDD V GSLAAAREKGLLRSEGK+Y++Q+GD
Sbjct: 297 TRGTKAPQAAGKIHTDFERGFIRAEVVAYDDLVRCGSLAAAREKGLLRSEGKEYVMQDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|194334595|ref|YP_002016455.1| GTP-dependent nucleic acid-binding protein EngD [Prosthecochloris
aestuarii DSM 271]
gi|194312413|gb|ACF46808.1| GTP-binding protein YchF [Prosthecochloris aestuarii DSM 271]
Length = 363
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 272/369 (73%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPN+G V VPD R+ L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNIGTVLVPDERMQELASIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ +PA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D D++HV+GKV
Sbjct: 60 TPTIIPATLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIVHVVRCFDDGDVIHVHGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ I EL+ +DL+ +EKRM+KL+K A+ + L E A EK+ + L DG P
Sbjct: 120 DPADDISTIETELMLADLESMEKRMDKLRK-NARKEKELLPLVELA--EKVIKGLSDGIP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR++ D E+ Q LL+ KPI+Y ANV+E+DL P N + EV +A + S +
Sbjct: 177 ARALMETDEEKALGSQFFLLSAKPILYAANVSENDL--PDGNAYTAEVQRIAEEAGSKML 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISAQ EAE+ ELP EER E+L SLG+ SGL +I+S Y LLGL TYFT+G KE +AWT
Sbjct: 235 IISAQTEAEIAELPEEERPEFLESLGLPMSGLDRIIQSAYDLLGLHTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+AA IH+DFEKGFIRAE +AY+D + GS A+E G +RSEGK+YIV++G
Sbjct: 295 IRKGAAAPEAAAAIHTDFEKGFIRAEVIAYNDMITYGSEQKAKEAGKMRSEGKEYIVKDG 354
Query: 415 DVMLFRFNV 423
DV++FRFNV
Sbjct: 355 DVIVFRFNV 363
>gi|255656639|ref|ZP_05402048.1| putative GTP-binding protein [Clostridium difficile QCD-23m63]
gi|296449905|ref|ZP_06891669.1| GTP-binding protein YchF [Clostridium difficile NAP08]
gi|296878286|ref|ZP_06902295.1| GTP-binding protein YchF [Clostridium difficile NAP07]
gi|296261175|gb|EFH08006.1| GTP-binding protein YchF [Clostridium difficile NAP08]
gi|296430734|gb|EFH16572.1| GTP-binding protein YchF [Clostridium difficile NAP07]
Length = 365
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+ L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDERLNKLQELYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLV+GAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVPTAIEFCDIAGLVRGASKGEGLGNKFLSHIREVDAIVHVVRCFEDENVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K +K D K +E L+ I L + K R
Sbjct: 120 LRDIETINLELIFSDIEILERRINKTQKAAKAD---KTLGSELDLLKSIMSTLEESKCVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ + E+ + L LLT KP+IY +NV+E DLAD G +N +V +V A + V
Sbjct: 177 TMEFTEDEQIFVNSLDLLTSKPVIYASNVSEDDLADNGENNKYVQQVKAFAETEDAEVVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+EAE++EL S EE+ E+L +LG+ +SGL LI+S+Y+LLGL ++ T+G KE +AWT
Sbjct: 237 VCAQIEAEISELDSAEEKKEFLETLGLEQSGLDKLIKSSYALLGLISFLTAGPKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQA G IHSD E+GFIRAET+A++D V G++AAA+EKGL++ EGK+YIV++G
Sbjct: 297 IKVGSKAPQAGGKIHSDIERGFIRAETIAFNDLVEHGTMAAAKEKGLVKLEGKEYIVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|451947232|ref|YP_007467827.1| GTP-binding protein YchF [Desulfocapsa sulfexigens DSM 10523]
gi|451906580|gb|AGF78174.1| GTP-binding protein YchF [Desulfocapsa sulfexigens DSM 10523]
Length = 365
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G A N+PFCTIEPNVGIV VPD RL VL+ ++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IDAENYPFCTIEPNVGIVPVPDKRLDVLAEMAN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+++ V +EFVDIAGLVKGASQGEGLGN+FL HIR+VD+++ V+RCFED +IVHV+G +
Sbjct: 60 TRRKVATQMEFVDIAGLVKGASQGEGLGNQFLGHIRQVDALVHVIRCFEDENIVHVDGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D +VI +EL+ +DLD +EKR+ K + AK KLK A+ LE+++ L G
Sbjct: 120 DPVRDKEVITMELILADLDTVEKRLRK-AQSLAKSGDKKLK-AQAVFLERLRDVLDSGAS 177
Query: 235 ARSVT-LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR++ D E++ +K++CLLT KP++YVANV E D+ D N HV + LA + G
Sbjct: 178 ARTLEPEGDMEKEMMKEMCLLTDKPVLYVANVKEEDVTD--GNEHVRALERLAQEDGDGV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I+ +E EL++L EER E+LA +G+ E GL LI + Y LLGL TYFT GEKET+AW
Sbjct: 236 VIIAGSIEQELSQLDQEERQEFLADMGMEEPGLNRLIAAGYKLLGLITYFTVGEKETRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP AAG IHSDF++GFIRAET++YDDFVA + A+EKG++RSEGK+Y+V +
Sbjct: 296 TISRGTKAPGAAGKIHSDFQRGFIRAETISYDDFVACDGESGAKEKGVMRSEGKEYVVAD 355
Query: 414 GDVMLFRFNV 423
GD + FRFNV
Sbjct: 356 GDCLNFRFNV 365
>gi|392329383|ref|ZP_10274000.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
canis FSL Z3-227]
gi|391420185|gb|EIQ82995.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
canis FSL Z3-227]
Length = 371
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 276/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 AAFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +KQL LLT KP++YVANV E +ADPG +V ++ + A+
Sbjct: 179 DGKSARTIAFTEEEQRIVKQLFLLTTKPVLYVANVDEDKVADPGDIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL +++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDDDKTEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD +A GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMAYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|262375419|ref|ZP_06068652.1| translation-associated GTPase [Acinetobacter lwoffii SH145]
gi|262309673|gb|EEY90803.1| translation-associated GTPase [Acinetobacter lwoffii SH145]
Length = 367
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 264/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P S+EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG++
Sbjct: 64 PQRVIPTSMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGRI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 124 DPLDDIATINTELALADLDAVAKAITRLTKSAKGGDKEAL--ATKAVLEKIQPLLDEGKP 181
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ + V
Sbjct: 182 ARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVRKLAAEENAIVV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +AWT
Sbjct: 239 PLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYLLLGLQTYFTAGVQEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G R EGK YIVQ+G
Sbjct: 299 VKIGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAGKWRLEGKTYIVQDG 358
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 359 DVLHFRFNV 367
>gi|166032702|ref|ZP_02235531.1| hypothetical protein DORFOR_02417 [Dorea formicigenerans ATCC
27755]
gi|346306750|ref|ZP_08848904.1| GTP-binding protein YchF [Dorea formicigenerans 4_6_53AFAA]
gi|166027059|gb|EDR45816.1| GTP-binding protein YchF [Dorea formicigenerans ATCC 27755]
gi|345908108|gb|EGX77776.1| GTP-binding protein YchF [Dorea formicigenerans 4_6_53AFAA]
Length = 366
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 284/370 (76%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+++IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L DG+ A+
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTK-VARNDKAAAK--ELALLEKIKAHLEDGRLAK 176
Query: 237 S--VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
+ ++ E + +K LLT KP+IY ANV+E DLAD G SN V V A+ +S
Sbjct: 177 TFDAVEDEEEEEWLKSYNLLTYKPVIYAANVSEDDLADDGASNAGVQAVREYAAKEESEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ A++EAE++EL +E+ +L LG++ESGL LI+++Y LLGL +Y T+GE E +AW
Sbjct: 237 FVVCAEIEAEISELDDDEKKMFLEDLGLTESGLEKLIKASYKLLGLISYLTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IHSDFE+GFIRAE V+YDD +A GS AAA+EKGL+R EGK+Y+V++
Sbjct: 297 TITEGTKAPQAAGKIHSDFERGFIRAEVVSYDDLIACGSHAAAKEKGLIRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|224823795|ref|ZP_03696904.1| GTP-binding protein YchF [Pseudogulbenkiania ferrooxidans 2002]
gi|224604250|gb|EEG10424.1| GTP-binding protein YchF [Pseudogulbenkiania ferrooxidans 2002]
Length = 363
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLAELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D+++VHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++ I EL +DL +EK +++ K ++S KDA + A LEK++ L G
Sbjct: 120 DPISDIETIGTELALADLTTVEKAIQR----DGKKAKSGDKDAIRLIAVLEKVRAHLDQG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PARS+ L+ E+ +K CLLT+KP +YVANVAE +NPH++++ LA +
Sbjct: 176 LPARSLGLDAEEQALLKPFCLLTIKPAMYVANVAEDGF---DNNPHLDKLKALADKEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL ++ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAAIESEIVELDDADKAEFLAEMGLEEPGLNRLIRAAYKLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T++YDDF+A G A A+E G +RSEGK+Y+V+
Sbjct: 293 WTIHVGDTAPQAAGVIHTDFERGFIRAQTISYDDFIACGGEAKAKEAGKMRSEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|224117620|ref|XP_002317624.1| predicted protein [Populus trichocarpa]
gi|222860689|gb|EEE98236.1| predicted protein [Populus trichocarpa]
Length = 299
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/292 (72%), Positives = 236/292 (80%), Gaps = 13/292 (4%)
Query: 145 FLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK 204
F+ ++ +LQVV CF+DNDIVHVNGKVDPK D DVINLELVFSDLDQ+EKR+EKLKK
Sbjct: 3 FICVLKACSLLLQVVLCFDDNDIVHVNGKVDPKWDFDVINLELVFSDLDQVEKRLEKLKK 62
Query: 205 GKAKDSQSKLK-DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVA 263
GKAKDSQSKLK DAEK+A+E+I+ ALMDGKPARSVTL DFE+D++ LC+LTMKP+IYV
Sbjct: 63 GKAKDSQSKLKEDAEKSAMERIRHALMDGKPARSVTLTDFEKDAVNHLCMLTMKPVIYVE 122
Query: 264 NVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSE 323
NVAESDLAD NP+V EVMNLAS+LQSG VTISAQVE+ LTELP EER E+L SLGVSE
Sbjct: 123 NVAESDLADSAINPNVKEVMNLASELQSGLVTISAQVESGLTELPFEERSEFLNSLGVSE 182
Query: 324 SGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVA 383
S LGNLIR+TYSLLGLRTYFTSGEKETKAWTI +GMTAPQAAGVIHSDFEKGFIRAETV+
Sbjct: 183 SCLGNLIRATYSLLGLRTYFTSGEKETKAWTILSGMTAPQAAGVIHSDFEKGFIRAETVS 242
Query: 384 Y--------DDFVA----AGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
DFV+ L + K L GK QEGDVMLFRFNV
Sbjct: 243 ILIRSFGFPKDFVSLFLYCAHLYSMNTKNLSTHPGKQCPFQEGDVMLFRFNV 294
>gi|375088033|ref|ZP_09734376.1| GTP-binding protein YchF [Dolosigranulum pigrum ATCC 51524]
gi|374563300|gb|EHR34620.1| GTP-binding protein YchF [Dolosigranulum pigrum ATCC 51524]
Length = 366
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 272/373 (72%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGVVEVPDSRLNRLTELVT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I VVRCF+D +I HV G+V
Sbjct: 60 PNKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICHVVRCFDDGNITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK----AALEKIQQALM 230
DP++D++ INLEL+ +DLD ++KR+EK K+ +K KD E LEK++ AL
Sbjct: 120 DPEADMNTINLELILADLDSVDKRLEKTKRA------AKGKDPEALELLPVLEKLKPALE 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG PAR++ ++ E+ ++ L LL+ KP++Y+ANVAE +A+P + H V LA +
Sbjct: 174 DGIPARALDWSEEEKPILRSLFLLSSKPVLYIANVAEEHVANPEESDHFQTVKRLADEEN 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA +E E+ L EER +L L + E GL +IR +Y+LL L TYFT+G KE
Sbjct: 234 AEVVGISAAIEEEIAALDDEERDMFLEDLEIKEPGLHRVIRKSYNLLNLGTYFTAGVKEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GMTAPQAAG+IHSDF++GFIRAET+A+DD+ GS A RE G LR EGK+YI
Sbjct: 294 RAWTFKKGMTAPQAAGIIHSDFQRGFIRAETIAFDDYDRLGSEKAVREAGRLRQEGKEYI 353
Query: 411 VQEGDVMLFRFNV 423
VQ+GDVM F+FNV
Sbjct: 354 VQDGDVMEFKFNV 366
>gi|90962563|ref|YP_536479.1| GTP-dependent nucleic acid-binding protein EngD [Lactobacillus
salivarius UCC118]
gi|90821757|gb|ABE00396.1| GTP-binding protein, probable translation factor [Lactobacillus
salivarius UCC118]
Length = 366
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L +
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV-----AEFAVLQKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D S
Sbjct: 175 GKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSKYYQQVKKFAEDEGS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+ E E+ ELP +E+ E+L + GV ESGL LIR +Y LLGL T+FT+G KET+
Sbjct: 235 QALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRVSYKLLGLATFFTAGGKETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G LR EGK+Y V
Sbjct: 295 AWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAGRLRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|291614808|ref|YP_003524965.1| GTP-binding protein YchF [Sideroxydans lithotrophicus ES-1]
gi|291584920|gb|ADE12578.1| GTP-binding protein YchF [Sideroxydans lithotrophicus ES-1]
Length = 363
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRMDELAKIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +DL +E+ +++ K ++S KDA+K A LE++ L +G
Sbjct: 120 DPISDIEVILTELALADLAVVERTIQR----DGKKAKSGDKDAQKLVAVLERLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+ L D E+ IK LCLLT+KP +YV NV E +NPH++++ A+ +
Sbjct: 176 KPARTFGLTDEEKLLIKPLCLLTVKPAMYVGNVLEDGFE---NNPHLDKLREHAAKEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAKIEAELADLDDADKKEFLADLGLDEPGLNRLIRTGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFEKGFIRA+T++Y DF+A G A A+EKG +R EGKDY+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFEKGFIRAQTISYVDFIACGGEAGAKEKGKMRVEGKDYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|293608337|ref|ZP_06690640.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|427422875|ref|ZP_18913049.1| GTP-binding protein YchF [Acinetobacter baumannii WC-136]
gi|292828910|gb|EFF87272.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|425700510|gb|EKU70093.1| GTP-binding protein YchF [Acinetobacter baumannii WC-136]
Length = 363
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LASD +
Sbjct: 175 GKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLASDENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y+V
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|229176151|ref|ZP_04303643.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MM3]
gi|228607310|gb|EEK64640.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
MM3]
Length = 369
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 278/372 (74%), Gaps = 7/372 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L
Sbjct: 3 NMGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELV 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+ +K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GK
Sbjct: 62 EPKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGK 121
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMD 231
VDP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +
Sbjct: 122 VDPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEE 177
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ +
Sbjct: 178 GKPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIMDPSENKYVQMVKEFAANENA 237
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 238 QVIVVCAKIEEEIAELDEEEKKVFLEELGIEESGLDQLIRAAYDLLGLATYFTAGVQEVR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIH+DFE+GFIRAETV+Y+D + GS+ AA+E G +R EGK+YIV
Sbjct: 298 AWTFKQGMKAPQCAGVIHTDFERGFIRAETVSYEDLMTNGSMTAAKEAGKVRLEGKEYIV 357
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 358 KDGDVMHFRFNV 369
>gi|253580154|ref|ZP_04857421.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251848673|gb|EES76636.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 365
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLLGDFYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNVIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K+ K D ++ E L+K++ L DGK A
Sbjct: 120 IRDIETINLELIFSDLEILERRIAKVTKTARMDKEAA---KELDFLQKVKTHLEDGKMAI 176
Query: 237 SVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ + N+ E + LLT KP+IY ANVAE DLAD G SN HV V A++ S
Sbjct: 177 TMEMENEDEEAWMSTYNLLTWKPVIYAANVAEGDLADDGESNSHVQAVRKYAAEQNSEIF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E++EL +E+ +L LG++ESGL L++++Y LLGL ++ TSGE ET+AWT
Sbjct: 237 VICAEIEEEISELDDDEKKMFLEDLGLTESGLEKLVKASYHLLGLMSFLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGL+R EGK+Y+VQ+G
Sbjct: 297 IKIGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLVRMEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|423520688|ref|ZP_17497161.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA4-10]
gi|401179785|gb|EJQ86948.1| GTP-dependent nucleic acid-binding protein engD [Bacillus cereus
HuA4-10]
Length = 366
Score = 414 bits (1063), Expect = e-113, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL+ L+ L +
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDERLNKLTELVE 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTVFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D++ INLEL+ +DL+ ++KR+E++ AK ++ K K+A E L ++++A +G
Sbjct: 120 DPIDDIETINLELILADLESVDKRIERV----AKLARQKDKEAVYEHEILVRLKEAFEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR+V + + +K L LLT K ++YVANV+E D+ DP N +V V A++ S
Sbjct: 176 KPARTVEFTEEQMKIVKGLHLLTTKEMLYVANVSEDDIIDPSENKYVQMVKEFAANENSQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +A
Sbjct: 236 VIVVCAKIEEEIAELDEEEKKVFLEELGIKESGLDQLIRAAYDLLGLATYFTAGVQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQ AGVIH+DFE+GFIRAETV+Y D + GS+ AA+E G +R EGK+YIV+
Sbjct: 296 WTFKQGMKAPQCAGVIHTDFERGFIRAETVSYTDLMTNGSMTAAKEAGKVRLEGKEYIVK 355
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 356 DGDVMHFRFNV 366
>gi|384426744|ref|YP_005636101.1| GTP-binding protein YchF [Xanthomonas campestris pv. raphani 756C]
gi|341935844|gb|AEL05983.1| GTP-binding protein YchF [Xanthomonas campestris pv. raphani 756C]
Length = 363
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAAAEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
+EGDV+ FRFNV
Sbjct: 352 KEGDVLHFRFNV 363
>gi|357639709|ref|ZP_09137582.1| GTP-binding protein YchF [Streptococcus urinalis 2285-97]
gi|418416915|ref|ZP_12990113.1| GTP-binding protein YchF [Streptococcus urinalis FB127-CNA-2]
gi|357588163|gb|EHJ57571.1| GTP-binding protein YchF [Streptococcus urinalis 2285-97]
gi|410872971|gb|EKS20907.1| GTP-binding protein YchF [Streptococcus urinalis FB127-CNA-2]
Length = 371
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 277/373 (74%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGN+FL++IR+VD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNQFLANIRQVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DLD + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLDSVNKRYARVEK-IARTQKDKDSLAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ N+ E+ +K L LLT KP++YVANV E ++DP S +VN++ AS
Sbjct: 179 DGKSARTIDFNEEEQKIVKGLFLLTTKPVLYVANVDEDKVSDPDSIDYVNQIREFASTEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKMEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD ++ GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLISYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GDVM FRFNV
Sbjct: 359 VQDGDVMEFRFNV 371
>gi|300854238|ref|YP_003779222.1| GTP-binding protein [Clostridium ljungdahlii DSM 13528]
gi|300434353|gb|ADK14120.1| predicted GTP-binding protein [Clostridium ljungdahlii DSM 13528]
Length = 365
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED++IVHV+G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDDNIVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+FSDL+ +++R+EK+ K K+ D +SK+ E + K+++ L +G P
Sbjct: 120 IRDIETINLELIFSDLEVMDRRIEKVSKLAKSGDKESKV---EYEIMLKVKKHLEEGNPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
R++ LN+ E + +K LLT KP++YVAN++E DL N V +V A S V
Sbjct: 177 RTLDLNEDEAELVKSFFLLTTKPVLYVANISEDDLTSGNLENDFVKKVQEYAKVEGSEVV 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA++E EL+ L +ER+E L G++E+GL LI S+Y LLGL ++ T+GEKE +AWT
Sbjct: 237 IISAKIEEELSSLEDDERLEMLKEYGLNEAGLDKLINSSYKLLGLMSFLTAGEKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP+AAG IH+D +KGFIRAE V+YD V GS +A+EKG R EGKDYI+Q+G
Sbjct: 297 IKKGTKAPEAAGKIHTDIQKGFIRAEIVSYDKLVECGSETSAKEKGCYRLEGKDYIMQDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|336419594|ref|ZP_08599852.1| GTP-binding protein YchF [Fusobacterium sp. 11_3_2]
gi|336163468|gb|EGN66392.1| GTP-binding protein YchF [Fusobacterium sp. 11_3_2]
Length = 364
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 271/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+VANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLTDDEKQILKNYQLLTLKPMIFVANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|357418245|ref|YP_004931265.1| GTP-binding protein YchF [Pseudoxanthomonas spadix BD-a59]
gi|355335823|gb|AER57224.1| GTP-binding protein YchF [Pseudoxanthomonas spadix BD-a59]
Length = 363
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVGIV VPDPRL L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGIVPVPDPRLKALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VP +VEFVDIAGLV GA+ GEGLGNKFLSHIREVD+I VVRCFE++D++HVN KV
Sbjct: 60 PHRVVPTAVEFVDIAGLVAGAASGEGLGNKFLSHIREVDAIAHVVRCFENDDVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++ I+ EL +DLD +EK R E+ KG K++ ++ K L ++Q AL D
Sbjct: 120 DPISDIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR-----KPVLARLQAALND 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G PAR L++ +R ++ L LLT+KP++Y+ANV E + NPH++ V A +
Sbjct: 175 GIPARRAGLDEEQRALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAEQEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL +L +R +LA LG+ E GL +I + Y LLGL+TYFT+G +E +
Sbjct: 232 RVVPVSAAIEEELAQLDDADRDAFLADLGLEEPGLNRVIYAAYQLLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAP+AA VIH+DFEKGFIRAET++YDDF+ A +E G LR EGKDY V
Sbjct: 292 AWTVKAGSTAPKAAAVIHTDFEKGFIRAETMSYDDFIKYKGEAGCKEAGRLRLEGKDYKV 351
Query: 412 QEGDVMLFRFNV 423
QEGD++ FRFNV
Sbjct: 352 QEGDILHFRFNV 363
>gi|237745352|ref|ZP_04575833.1| GTP-binding protein [Fusobacterium sp. 7_1]
gi|229432581|gb|EEO42793.1| GTP-binding protein [Fusobacterium sp. 7_1]
Length = 364
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/367 (56%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ LS + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELSKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|433679032|ref|ZP_20510816.1| Obg-like ATPase 1 [Xanthomonas translucens pv. translucens DSM
18974]
gi|430815856|emb|CCP41361.1| Obg-like ATPase 1 [Xanthomonas translucens pv. translucens DSM
18974]
Length = 363
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/372 (57%), Positives = 272/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLGELARIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE+ D++HVN KV
Sbjct: 60 PQKVVPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFENADVIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD+D I+ EL +DLD +EK R E+ KG KD+ ++ K AL K+Q AL D
Sbjct: 120 DPISDIDTIDTELALADLDSVEKALNRAERSAKGGDKDAAAR-----KPALAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ANV E + NPH++ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYIANVLEDGFEN---NPHLDAVRARAATEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG++E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDTFLADLGLAEPGLNRVIRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+AY DF+ A ARE G LR EGKDY V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAYADFIKYKGEAGAREAGRLRLEGKDYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|259047764|ref|ZP_05738165.1| GTP-dependent nucleic acid-binding protein EngD [Granulicatella
adiacens ATCC 49175]
gi|259035955|gb|EEW37210.1| GTP-dependent nucleic acid-binding protein EngD [Granulicatella
adiacens ATCC 49175]
Length = 366
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 276/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDLRLQKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCFED +I HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLSHIRQVDAICQVVRCFEDENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D++ INLELV +DL+ ++KR+ ++ AK +++K KDA E A LEKI+ L +G
Sbjct: 120 DPIADIETINLELVLADLESVDKRIARV----AKIAKTKDKDAVAELAVLEKIKPVLEEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+ AR++ D E +K L LLT KP++Y+AN++E D+ + G N +V V + A+ +
Sbjct: 176 QLARTIEFTDEELPIVKGLFLLTTKPMLYIANISEDDVMEGGHNQYVQLVEDYAAKEDAE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++E E+ EL EE+ +L +G+ SGL LI+ Y LLGL TYFT+GE+E +A
Sbjct: 236 VVVICAKIEEEVAELEEEEKQAFLEEMGIEVSGLDILIQKAYHLLGLATYFTAGEQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT R GM APQ AG+IHSDFE+GFIRAETVAY D + GS+ AA+E G +R EGK+Y+VQ
Sbjct: 296 WTFRRGMKAPQCAGIIHSDFERGFIRAETVAYADLLEYGSMTAAKENGKVRQEGKEYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|347541312|ref|YP_004848738.1| GTP-binding protein YchF [Pseudogulbenkiania sp. NH8B]
gi|345644491|dbj|BAK78324.1| GTP-binding protein YchF [Pseudogulbenkiania sp. NH8B]
Length = 363
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/371 (56%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLAELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D+++VHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++ I EL +DL +EK +++ K ++S KDA + A LEK++ L G
Sbjct: 120 DPISDIETIGTELALADLTTVEKAIQR----DGKKAKSGDKDAIRLIAVLEKVRAHLDQG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PARS+ L+ E+ +K CLLT+KP +YVANVAE +NPH++++ LA +
Sbjct: 176 LPARSLGLDAEEQVLLKPFCLLTIKPAMYVANVAEDGF---DNNPHLDKLKALADKEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL ++ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAAIESEIVELDDADKAEFLAEMGLEEPGLNRLIRAAYKLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T++YDDF+A G A A+E G +RSEGK+Y+V+
Sbjct: 293 WTIHVGDTAPQAAGVIHTDFERGFIRAQTISYDDFIACGGEAKAKEAGKMRSEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|260588072|ref|ZP_05853985.1| GTP-binding protein YchF [Blautia hansenii DSM 20583]
gi|331082359|ref|ZP_08331485.1| GTP-binding protein YchF [Lachnospiraceae bacterium 6_1_63FAA]
gi|260541599|gb|EEX22168.1| GTP-binding protein YchF [Blautia hansenii DSM 20583]
gi|330400845|gb|EGG80446.1| GTP-binding protein YchF [Lachnospiraceae bacterium 6_1_63FAA]
Length = 365
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 276/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIVAVPD RL +L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVAVPDERLKLLGDFYQSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDENVIHVDGCIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K D ++ E L++++ L DGKPA
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTKTARMDKEAA---KELEFLKQVKAHLEDGKPAS 176
Query: 237 SVTLNDFERD-SIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSGRV 294
S+ L+ E++ +K+ LLT KP+IY ANV+E DLA D SN +V +V A + S
Sbjct: 177 SMELDGEEQELYMKEYNLLTWKPVIYAANVSEDDLADDAASNEYVAKVREYAKETGSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E++EL +E+ E+L LG+ +SGL LI ++Y LLGL ++ T+GE ET+AWT
Sbjct: 237 ALCAEIEQEISELEEDEKKEFLEDLGIQQSGLEKLIVASYRLLGLLSFLTAGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGL+R EGK+Y+VQ+G
Sbjct: 297 IKVGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLVRMEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|301301108|ref|ZP_07207265.1| GTP-binding protein YchF [Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851237|gb|EFK78964.1| GTP-binding protein YchF [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 366
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+D IN+EL +DL+ + KR +EK+ + K KD+ AE A L+KI+ L +
Sbjct: 120 DPLEDIDTINMELTLADLESVNKRYARVEKVARTKDKDAV-----AEFAVLQKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS+ ND E+ +K L LLT KP++YVAN+AE D+ADP + + +V A D S
Sbjct: 175 GKPVRSIEFNDEEKKIVKGLFLLTSKPVLYVANIAEEDMADPEQSEYYQQVKKFAEDEGS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+ E E+ ELP +E+ E+L + GV ESGL LIR++Y LLGL T+FT+G KET+
Sbjct: 235 QALAVSARTEEEIAELPDDEKQEFLEAEGVEESGLDRLIRASYKLLGLATFFTAGGKETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GM APQ AGVIHSDFE+GFIRAETV++DD GS+ +E G LR EGK+Y V
Sbjct: 295 AWTFKRGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQDVKEAGRLRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|262278826|ref|ZP_06056611.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|262259177|gb|EEY77910.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
Length = 366
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/374 (55%), Positives = 268/374 (71%), Gaps = 12/374 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VKPQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLL 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++
Sbjct: 176 DEGKPARAADLSDDERKLVRGFGLITLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEE 232
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 233 NAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQE 292
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y
Sbjct: 293 VRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTY 352
Query: 410 IVQEGDVMLFRFNV 423
IVQ+GDVM FRFNV
Sbjct: 353 IVQDGDVMHFRFNV 366
>gi|407718854|ref|YP_006796259.1| GTP-binding protein YchF [Leuconostoc carnosum JB16]
gi|407242610|gb|AFT82260.1| GTP-binding protein YchF [Leuconostoc carnosum JB16]
Length = 366
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 269/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D+D IN EL+ +DL+ IEKR K+ + K D ++K AE LEKI+ L GK
Sbjct: 120 NPLDDIDTINTELILADLETIEKRYAKVARAAKGPDKEAK---AEFGVLEKIKPVLESGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R++ N+ ++ +K L LLT KP++YVAN+AE D+ADP S+ H N++ + A+ +
Sbjct: 177 SVRTIDFNEDDQKIVKGLFLLTAKPVLYVANLAEDDMADPESSKHFNDIKDFAATEGADV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA E E+ +L E++ E+L GV E GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 237 IGLSASAEEEIAQLADEDKAEFLEMAGVEEPGLNKLIRAAYHLLDLRTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T +AGM APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G LRSEGK+YIV +
Sbjct: 297 TFKAGMKAPQAAGVIHSDFERGFIRAETIAFQDLDQMGSVKAVKEAGKLRSEGKEYIVND 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|366166794|ref|ZP_09466549.1| GTP-binding protein YchF [Acetivibrio cellulolyticus CD2]
Length = 364
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 270/367 (73%), Gaps = 3/367 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVGIVAVPD RL L+ + +
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGIVAVPDERLDKLAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGNKFLSHIREVDSI+ VVRCFED++IVHV+G V P
Sbjct: 60 KLTPTAIEFVDIAGLVKGASKGEGLGNKFLSHIREVDSIVHVVRCFEDSNIVHVDGSVGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+ I +ELV +DL+ +EKR+++ +K K K + E E+I + L +GKPAR
Sbjct: 120 VRDVETIEMELVLADLEVMEKRIDRTRK-MLKSGDKKFQ-TELDLYEEILKTLSEGKPAR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S+ + + + QL LLT KP++Y ANVAE L D NP + E+++ A S + I
Sbjct: 178 SMKFDAEQEKMVDQLFLLTSKPVLYAANVAEDGLHDTSKNPLLQELVDHAKKEGSEVMVI 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E E+ +L EE+ E+L LG+SESGL L++++Y LLGL ++ T+G +E +AWTI
Sbjct: 238 CAKIEEEIAQLEDEEKAEFLKELGLSESGLDRLVKASYKLLGLISFLTAGPQEVRAWTIV 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+DFE+GFIRAE VA+ D + GS AA+EKGL+RSEGK+Y++ +GDV
Sbjct: 298 KGTKAPQAAGKIHTDFERGFIRAEIVAFKDLMECGSYTAAKEKGLVRSEGKEYVMNDGDV 357
Query: 417 MLFRFNV 423
LFRFNV
Sbjct: 358 TLFRFNV 364
>gi|21230349|ref|NP_636266.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. ATCC 33913]
gi|66769657|ref|YP_244419.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. 8004]
gi|21111903|gb|AAM40190.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66574989|gb|AAY50399.1| GTP-binding protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 60 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL D
Sbjct: 120 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR-----KPVLAKLQAALAD 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+ +
Sbjct: 175 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAATEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G +E +
Sbjct: 232 EVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVREVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G LR EGK+Y V
Sbjct: 292 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAGRLRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
+EGDV+ FRFNV
Sbjct: 352 KEGDVLHFRFNV 363
>gi|302877830|ref|YP_003846394.1| GTP-binding protein YchF [Gallionella capsiferriformans ES-2]
gi|302580619|gb|ADL54630.1| GTP-binding protein YchF [Gallionella capsiferriformans ES-2]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRMDELAKIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCFED ++VHV G+V
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFEDENVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +D+ +E+ + + K ++S KDA K A LEK+ L +G
Sbjct: 120 DPLSDIEVILTELALADMAVVERTLHR----DGKKAKSGDKDAIKMVAVLEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R+ L+D E++ +K LC+LT+KP +YV NV E +NPH++ + A+ +
Sbjct: 176 KPVRTFGLSDDEKEIVKPLCMLTIKPAMYVGNVMEDGFE---NNPHLDRLREYAAKEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A++EAEL++L +R+E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVVLCAKIEAELSDLDDADRLEFLADLGLDEPGLNKLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+A+ DF+A G A A+EKG +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQTIAFSDFIACGGEAGAKEKGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVLNFLFNV 363
>gi|21673124|ref|NP_661189.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium tepidum
TLS]
gi|21646199|gb|AAM71531.1| GTP-binding protein [Chlorobium tepidum TLS]
Length = 363
Score = 412 bits (1060), Expect = e-112, Method: Compositional matrix adjust.
Identities = 213/371 (57%), Positives = 269/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPDPRL L+ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDPRLSELARVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA +E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCFED +I+HV GK+
Sbjct: 60 TPVIVPAVLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIIHVVRCFEDPNIIHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKDAEKAALEKIQQALMDG 232
DP D+ I EL+ +DLD +EKR++KL+KG K KD Q+ + A EKI L +G
Sbjct: 120 DPAGDIATIETELMLADLDSMEKRIDKLRKGARKEKDQQALVDLA-----EKIVAGLGEG 174
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
P RS+ ND ER KQ L+T KP+++ ANVAE+DL P N H V +A++ S
Sbjct: 175 VPVRSILENDEERAMAKQFFLITAKPVLFAANVAETDL--PDGNEHTATVAKIAAENGSK 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ ISA+ EA++ ELP EER ++L SLG+ SGL LI + Y+LLGL YFT+G KE A
Sbjct: 233 MLIISAKAEADIAELPEEERPDFLESLGLEMSGLDRLIMAAYNLLGLHNYFTAGVKEVHA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTIR G AP+AA IHSDFEKGFIRAE +AY+D + GS +E G +RSEGK+Y+V+
Sbjct: 293 WTIRKGAAAPEAAAAIHSDFEKGFIRAEVMAYEDLITLGSEQKVKEAGKMRSEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 353 DGDVITFRFNV 363
>gi|303256351|ref|ZP_07342367.1| GTP-binding protein YchF [Burkholderiales bacterium 1_1_47]
gi|302861080|gb|EFL84155.1| GTP-binding protein YchF [Burkholderiales bacterium 1_1_47]
Length = 364
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAKLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I +VRCF D++IVHV G V
Sbjct: 60 PQRIVPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAIAHIVRCFNDDNIVHVAGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ VIN+EL +DL ++K++ K K +A+ K LEKI+ L +GKP
Sbjct: 120 DPLEDISVINMELALADLASVDKQLNKYTK-QARSGGDKEALKLVTVLEKIRPVLNEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+ E+ IKQLCLLTMKP++YVANV E + N + EV + + ++ V
Sbjct: 179 ARSVDLSKDEKAVIKQLCLLTMKPVMYVANVEEDGFEN---NALLEEVKAVGVEEKAPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++EAE+++LP EE+ +L +G+ E GL +IR+ Y LLGL TYFT+G KE +AWT
Sbjct: 236 AVCAKIEAEISDLPDEEKQIFLEDIGMHEPGLNRVIRAAYQLLGLETYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G LR EGKDY+VQ+G
Sbjct: 296 IHKGDLAPQAAGVIHTDFERGFIRAQTISYDDFVQYKGEAGAKEAGKLRVEGKDYVVQDG 355
Query: 415 DVMLFRFNV 423
D+M F FNV
Sbjct: 356 DIMNFLFNV 364
>gi|188992869|ref|YP_001904879.1| GTP-dependent nucleic acid-binding protein EngD [Xanthomonas
campestris pv. campestris str. B100]
gi|167734629|emb|CAP52839.1| GTP-binding protein [Xanthomonas campestris pv. campestris]
Length = 385
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 23 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNELAEIVK 81
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +VEFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE DI+HVN KV
Sbjct: 82 PQKLIPTAVEFVDIAGLVAGAASGEGLGNKFLAHIREVDAITHVVRCFEHADIIHVNNKV 141
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I+ EL +DLD +EK R E+ KG K++ ++ K L K+Q AL D
Sbjct: 142 DPIADIETIDTELALADLDSVEKALNRAERSAKGGDKEAAAR-----KPVLAKLQAALAD 196
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS L++ E+ ++ L LLT+KP++Y+ NV E + NPH++ V A+ +
Sbjct: 197 GKAGRSAGLDEEEKALVRDLFLLTLKPVMYICNVLEDGFEN---NPHLDAVRAHAATEGA 253
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E EL++L +R +LA LG+ E GL +IR+ Y LLGL+TYFT+G +E +
Sbjct: 254 EVVPVSAAIEEELSQLDDADRDTFLADLGLDEPGLNRVIRAAYKLLGLQTYFTAGVREVR 313
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++AG TAPQAA VIH+DFEKGFIRAET+A+DDF+ + AR+ G LR EGK+Y V
Sbjct: 314 AWTVKAGSTAPQAAAVIHTDFEKGFIRAETIAFDDFIKYRGESGARDAGRLRLEGKEYRV 373
Query: 412 QEGDVMLFRFNV 423
+EGDV+ FRFNV
Sbjct: 374 KEGDVLHFRFNV 385
>gi|58039605|ref|YP_191569.1| GTP-dependent nucleic acid-binding protein EngD [Gluconobacter
oxydans 621H]
gi|58002019|gb|AAW60913.1| GTP-binding protein [Gluconobacter oxydans 621H]
Length = 364
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 269/372 (72%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPN G VAVPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNTGRVAVPDPRLDELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + VP S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SIRKVPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D D+I EL+ +DL+ +EKR ++K +G +++Q++L+ +E + AL D
Sbjct: 121 DPVRDADIIETELMLADLESLEKRQVGLQKRARGNDREAQAQLE-----LMEPLLAALRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ + E ++ +L LLT KP++YV NV E+ A N V A +
Sbjct: 176 GKPARTAVPKEQEAEA-SRLQLLTTKPVLYVCNVEEASAAT--GNAFSEAVRKRAEAEGA 232
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA +EAE+++LP E+R E+L LG+++SGL +I + Y LLGLRTYFT G KE++
Sbjct: 233 GVVVVSAAIEAEVSQLPQEDRTEFLEGLGLTDSGLDRVIAAGYKLLGLRTYFTVGPKESR 292
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI AG APQAA VIH+DFE+GFI ETVA+DD+VA A A+E G LR EGK+Y+V
Sbjct: 293 AWTITAGTKAPQAAAVIHNDFERGFIACETVAFDDYVACNGEAGAKEAGKLRIEGKEYVV 352
Query: 412 QEGDVMLFRFNV 423
Q+GDV+LFRFNV
Sbjct: 353 QDGDVLLFRFNV 364
>gi|335032162|ref|ZP_08525568.1| GTP-binding protein YchF [Streptococcus anginosus SK52 = DSM 20563]
gi|333767713|gb|EGL44940.1| GTP-binding protein YchF [Streptococcus anginosus SK52 = DSM 20563]
Length = 371
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/373 (54%), Positives = 275/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SNFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++VE+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKVEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT R GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFRRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|424780793|ref|ZP_18207663.1| GTP-binding and nucleic acid-binding protein YchF [Catellicoccus
marimammalium M35/04/3]
gi|422842718|gb|EKU27167.1| GTP-binding and nucleic acid-binding protein YchF [Catellicoccus
marimammalium M35/04/3]
Length = 366
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 278/370 (75%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPNVGIV VPD RL L+ L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIEPNVGIVEVPDARLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+V+GAS+GEGLGN+FLS+IR VD+I VVRCF+D +I HV+GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVRGASKGEGLGNQFLSNIRNVDAICHVVRCFDDENITHVDGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLEL+ +DL+ ++KR+ +++K K KD+++ E L KI++AL +
Sbjct: 120 DPLSDIETINLELILADLESVDKRITRVQKIAKTKDAEAV---KEYNVLVKIKEALENNL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSV + + E+ ++ L LLT KP++YVANVAE DLAD +N ++ V A++ +
Sbjct: 177 PARSVEITEEEQPIVRNLFLLTSKPVLYVANVAEEDLADLENNAYLQSVKEYAANEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+ E E+ EL +E+ E+L +LG+ ESGL LIR+ Y LLGL TYFT+GEKE +AW
Sbjct: 237 IAVCARAEEEIAELEEDEKQEFLEALGIEESGLDQLIRAAYHLLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFE+GFIRAETV++DD + GS+ A+E G +R EGKDY+VQ+
Sbjct: 297 TFKRGMKAPQTAGIIHSDFERGFIRAETVSFDDLMKYGSMTKAKEAGRVRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GD+M FRFNV
Sbjct: 357 GDIMEFRFNV 366
>gi|299144033|ref|ZP_07037113.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298518518|gb|EFI42257.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 364
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/368 (56%), Positives = 277/368 (75%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPN+G+V VPD RL VLS +S S
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AEAANYPFATIEPNIGVVNVPDERLKVLSEMSNSD 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE+ +I+HV+G VDP
Sbjct: 60 KTVYTNIEFFDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFENENIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+QIEKR+ K +K + K + L + E L+K++ L GKPAR
Sbjct: 120 LRDIENINLELIFSDLEQIEKRLSKTEK-QLKGDKKLLPEVE--LLKKLKDVLEKGKPAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRVT 295
+V L++ E IK LL+ KPIIYVANV+E D+ ++ N V +V A+ V
Sbjct: 177 NVELSEDEEKLIKNYALLSSKPIIYVANVSEDDISSNIDENKFVKKVREYATSQGDETVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA +EAE+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+G E++AWTI
Sbjct: 237 ISAAIEAEIQSLDDDEKEMFLKELGLDSSGLDKLIKSSYKLLGLISFLTTGPMESRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IHSD E+GFI+AET++YDD ++ GS+A+AREKGL+RSEGK+YI+Q+GD
Sbjct: 297 IKGSKAPQAAGKIHSDIERGFIKAETISYDDLISCGSMASAREKGLIRSEGKEYIMQDGD 356
Query: 416 VMLFRFNV 423
V++F+FNV
Sbjct: 357 VVVFKFNV 364
>gi|336400264|ref|ZP_08581049.1| GTP-binding protein YchF [Fusobacterium sp. 21_1A]
gi|336162914|gb|EGN65858.1| GTP-binding protein YchF [Fusobacterium sp. 21_1A]
Length = 364
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|322386428|ref|ZP_08060057.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
cristatus ATCC 51100]
gi|321269514|gb|EFX52445.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
cristatus ATCC 51100]
Length = 376
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESDFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR+V + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTVEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|241895292|ref|ZP_04782588.1| GTP-binding translation factor YchF [Weissella paramesenteroides
ATCC 33313]
gi|241871598|gb|EER75349.1| GTP-binding translation factor YchF [Weissella paramesenteroides
ATCC 33313]
Length = 367
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 270/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+D+DI HV+GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ IN ELV +DL+ I+KR +++K AK ++ K AE A LE+++ AL GKP
Sbjct: 120 DPLEDIETINTELVLADLESIDKRYSRVEKS-AKSAKDKEAIAELAVLEQLKPALEAGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ ++ E+ I L LLT KP++YVANV+E D+ADP + + ++ A + +
Sbjct: 179 ARSIDWDEDEQKIIHNLFLLTSKPVLYVANVSEDDMADPSESEYYQQIKQYAESEGADVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+ E E+ E+ E++ E++ G+SE GL LIR+ Y +L LRT+FT+G KET+AWT
Sbjct: 239 GISARAEEEIAEMDDEDKAEFMELQGISEPGLNRLIRAAYHMLDLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
RAGM APQ AGVIHSDFE+GFIRAETV+++D S+ A +E G RSEGK+Y+VQ+G
Sbjct: 299 FRAGMKAPQVAGVIHSDFERGFIRAETVSFEDLDKYASMKAIKEAGRRRSEGKEYVVQDG 358
Query: 415 DVMLFRFNV 423
D++ F FNV
Sbjct: 359 DIIEFLFNV 367
>gi|406037688|ref|ZP_11045052.1| GTP-binding protein YchF [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 363
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DLD + K R+ K KG KD+ A KAALEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKDAI-----ATKAALEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 175 GKPARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE +AYDDF+ A+E G R EGK YIV
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFIQYNGENGAKEAGKWRLEGKTYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 352 QDGDVLHFRFNV 363
>gi|260550653|ref|ZP_05824862.1| GTPase [Acinetobacter sp. RUH2624]
gi|260406364|gb|EEW99847.1| GTPase [Acinetobacter sp. RUH2624]
Length = 366
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/374 (54%), Positives = 267/374 (71%), Gaps = 12/374 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VKPQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLL 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 176 DEGKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEE 232
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E
Sbjct: 233 NAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQE 292
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y
Sbjct: 293 VRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTY 352
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GDVM FRFNV
Sbjct: 353 VVQDGDVMHFRFNV 366
>gi|427405451|ref|ZP_18895656.1| GTP-binding protein YchF [Selenomonas sp. F0473]
gi|425709248|gb|EKU72285.1| GTP-binding protein YchF [Selenomonas sp. F0473]
Length = 368
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/369 (57%), Positives = 271/369 (73%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+VAVPD RL+VL+ L S
Sbjct: 3 NLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNIGVVAVPDARLNVLTDLYHS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLVKGAS+GEGLGNKFL HIR+VD++ VVRCFE DI HV G VD
Sbjct: 62 KKTTPASVRFVDIAGLVKGASKGEGLGNKFLEHIRQVDAVAHVVRCFESTDITHVEGAVD 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D+D+I EL +DL+ +EKR K+ K S SK AE AAL++++ L +G PA
Sbjct: 122 PLRDIDIIETELCLADLEAVEKRAAKVT--KLLKSGSKEAKAEAAALDRLKAVLDEGHPA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSGRV 294
R L+ E+ ++ L LLT KPI+YVANV E + A NPHV V A+ + V
Sbjct: 180 REAELSAEEQALLRDLNLLTRKPILYVANVGEDEAATADAENPHVRAVREYAARTGAEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA++E E+ EL +EE +L LG+ ESGL LI ++LLGL+T+ T+GE E +AWT
Sbjct: 240 TVSARLEEEIAELDAEEAAVFLEELGLKESGLDRLIHGAFALLGLQTFLTAGEDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IH+DFE+GFIRAE V+Y+D V+ GS+AAAR+KGL+R EGKDY++++G
Sbjct: 300 ITRGTTAPKAAGKIHTDFERGFIRAEIVSYEDLVSLGSVAAARDKGLVRLEGKDYVMRDG 359
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 360 DVVNFRFNV 368
>gi|295697819|ref|YP_003591057.1| GTP-binding protein YchF [Kyrpidia tusciae DSM 2912]
gi|295413421|gb|ADG07913.1| GTP-binding protein YchF [Kyrpidia tusciae DSM 2912]
Length = 359
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/362 (57%), Positives = 260/362 (71%), Gaps = 3/362 (0%)
Query: 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121
+GLPNVGKSTLFNA+ G A+ AN+PFCTI+PNVG+V VPD RL L+ L K VPA
Sbjct: 1 MGLPNVGKSTLFNAITRAG-AETANYPFCTIDPNVGVVQVPDERLVRLAELFHPGKVVPA 59
Query: 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVD 181
EFVDIAGLVKGAS GEGLGN+FLSHIREVD+I+ VVRCFED DI HV G+V P D++
Sbjct: 60 VFEFVDIAGLVKGASHGEGLGNQFLSHIREVDAIVHVVRCFEDPDITHVAGRVSPVDDIE 119
Query: 182 VINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLN 241
IN+EL +DL+ +E+R+EK ++ + K D E A LE+IQ+ L +GK R +
Sbjct: 120 TINVELNLADLETVERRIEKTRR--LRKGGDKRYDWELALLERIQRLLAEGKGVRGQGWS 177
Query: 242 DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVE 301
+ E + L LLT KP+ YVANV E D+A +P V EV A + + +SA++E
Sbjct: 178 EEESQFLSDLHLLTAKPVFYVANVDERDVATAWEHPMVQEVRRHARVEGAEVIPVSARLE 237
Query: 302 AELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTA 361
AE+ EL E+R +LA G+ ESGL + R+ Y LLGL TYFT+G+KE KAWTI G A
Sbjct: 238 AEIAELEGEDRDLFLAEAGLQESGLDRITRAAYKLLGLITYFTAGDKEVKAWTIVKGTKA 297
Query: 362 PQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRF 421
PQAAGVIHSDFE+GFIRAE ++Y+D V AGS AAARE+GLLR EGKDY+VQ+GDVM FRF
Sbjct: 298 PQAAGVIHSDFERGFIRAEVISYEDLVRAGSTAAAREQGLLRLEGKDYVVQDGDVMHFRF 357
Query: 422 NV 423
NV
Sbjct: 358 NV 359
>gi|222054666|ref|YP_002537028.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter daltonii
FRC-32]
gi|221563955|gb|ACM19927.1| GTP-binding protein YchF [Geobacter daltonii FRC-32]
Length = 364
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 272/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPD R+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVQVPDERMKKLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+I+ VVRCFED ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAIVHVVRCFEDENVVHVSGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P +D++VI EL +DLD +EK++ +++K AK K+KD E ++++ A+ GK
Sbjct: 120 NPVNDIEVIKTELGLADLDSVEKKLVRVEK-LAKSGDKKVKD-EADFYQRLKGAVEQGKR 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
+ V +D E+ + L LLT KP++YVANV+E DL G +P V V LA+ + V
Sbjct: 178 PQDVVTSDDEKLWLYDLHLLTDKPVLYVANVSEDDL--EGKHPFVARVQELAAAEGARVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
TI ++EAE++EL +E+ +LA +G+ ESGL LIRS Y LLGL TYFT+G KE +AWT
Sbjct: 236 TICGRIEAEISELDGDEKEAFLAEMGLKESGLDRLIRSGYELLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIHSDFEKGFIRAE +AY DF+AAG A A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 ITRGTKAPQAAGVIHSDFEKGFIRAEVIAYSDFIAAGGEAGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|110634508|ref|YP_674716.1| GTP-dependent nucleic acid-binding protein EngD [Chelativorans sp.
BNC1]
gi|110285492|gb|ABG63551.1| GTP-binding protein YchF [Chelativorans sp. BNC1]
Length = 367
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 268/374 (71%), Gaps = 12/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL ++ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLKKIAEIAA 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ VP + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKETVPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D D + EL+ +DL+ +E+R+ +++K GK K++ S L +E+ + L D
Sbjct: 121 DPVADADTVETELMLADLESLERRIVQVRKRATGKEKEAMSILP-----VMEEALKLLQD 175
Query: 232 GKPARSVT--LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKP R V L+ ++ L LLT KP++YV NVAE D A N H + V +A
Sbjct: 176 GKPVRLVAAELDPEGMRILRSLNLLTSKPVLYVCNVAEGDAAT--GNAHTSAVEKMAEAQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA +EAE+ +LP EE EYL ++G+ E GL LIR+ Y LL L T+FT+G KE
Sbjct: 234 GARTVIISAAIEAEVAQLPQEEAAEYLEAMGLHEPGLDRLIRAGYELLDLITFFTAGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT++ G APQAAGVIH+DFE+GFIRA+T+AYDDFV G AARE G R EGKDY
Sbjct: 294 ARAWTVQKGAKAPQAAGVIHTDFERGFIRAQTIAYDDFVQLGGETAAREAGKARDEGKDY 353
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GDVMLF+FNV
Sbjct: 354 VVQDGDVMLFKFNV 367
>gi|358067512|ref|ZP_09153990.1| GTP-binding protein YchF [Johnsonella ignava ATCC 51276]
gi|356694165|gb|EHI55828.1| GTP-binding protein YchF [Johnsonella ignava ATCC 51276]
Length = 365
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A AAN+PFCTI+PNVG+VAVPD RL +L L KS+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AAAANYPFCTIDPNVGVVAVPDKRLKLLGDLYKSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA ++FVDIAGLVKGAS+GEGLGN+FLS+IRE D+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KVTPAVIDFVDIAGLVKGASKGEGLGNQFLSNIRECDAIVHVVRCFEDENVVHVDGTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+F+D++ +E+R+ K K D + K E +++++ L GKPA+
Sbjct: 120 IRDIETINLELIFADIEILERRIAKTAKSAVNDKKLK---KELDIMKELKDILESGKPAK 176
Query: 237 SVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
+D E D + L L+T P+IY ANVAE+DL D G +N +V EV LAS+ S
Sbjct: 177 IFITDDDEISDFVSSLGLITYMPVIYAANVAENDLIDEGENNKYVKEVRKLASETSSKVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E+ +L +E+ EYL +LG+ ESGL LI ++Y LLGL ++ TSGE ET+AWT
Sbjct: 237 LVCAKIEEEIAQLDDDEKSEYLEALGIKESGLDKLISASYDLLGLLSFLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSDFE+GFIRAE + + D + GS AAA++KGL+R EGK+Y+V++G
Sbjct: 297 IKKGTKAPGAAGKIHSDFERGFIRAEVINFQDLIDCGSSAAAKDKGLMRLEGKEYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|294055134|ref|YP_003548792.1| GTP-binding protein YchF [Coraliomargarita akajimensis DSM 45221]
gi|293614467|gb|ADE54622.1| GTP-binding protein YchF [Coraliomargarita akajimensis DSM 45221]
Length = 367
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 274/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNA+ KA++AN+PFCTI+PNVG+V VPD RL L ++K+
Sbjct: 2 LQAGIVGLPNVGKSTLFNALTRTRKAESANYPFCTIDPNVGVVQVPDERLEPLREIAKTD 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLV+GAS+GEGLGNKFL++IREVD+I+ VVRCFED+DI+H G +DP
Sbjct: 62 KVIPAAIEFVDIAGLVEGASKGEGLGNKFLANIREVDAIVHVVRCFEDDDIIHNMGSIDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++VIN EL+ +D+ IE + EK +KK + D ++K ++ E ++++ L + KPA
Sbjct: 122 LRDIEVINTELILADISSIESQKEKAVKKARGGDKEAK-ENVE--LIDRLIPHLNENKPA 178
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGRV 294
++ + D ++ +K+LCLL+ K ++Y NVAESDL+D SNP V +V A + +G
Sbjct: 179 ITLEMTDDDKVVLKRLCLLSAKRVLYACNVAESDLSDTSSNPFVAKVETYAREHHGAGIC 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA VEAEL + + E EYL SLG+++SG+ LIR+TY LLGL +YFT+G +E +AWT
Sbjct: 239 IISAAVEAELIDFDAAEAAEYLESLGITDSGVSLLIRATYQLLGLASYFTAGVQEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AGVIH+DFE GFI+AE V+Y+D V AGS A AR+ G R EGKDY ++G
Sbjct: 299 FKLGMKAPQCAGVIHTDFESGFIKAEVVSYEDLVTAGSTAGARDAGKYRLEGKDYEFKDG 358
Query: 415 DVMLFRFN 422
DV LFRFN
Sbjct: 359 DVALFRFN 366
>gi|389706441|ref|ZP_10186454.1| GTP-binding protein YchF [Acinetobacter sp. HA]
gi|388610576|gb|EIM39693.1| GTP-binding protein YchF [Acinetobacter sp. HA]
Length = 363
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 266/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ IN EL +DL+ + K + +L K K D ++ A KA L+KI L +GK
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAI---ATKAVLDKILPLLDEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ TL+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA+ +
Sbjct: 177 PARAATLDDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRELAAAENAIV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ YSLLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAPQAAGVIH+DFEKGFIRAE +AYDDFV A A+E G R EGK YIVQ+
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFVQYNGEAGAKEAGKWRLEGKTYIVQD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVLHFRFNV 363
>gi|422881141|ref|ZP_16927597.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK355]
gi|332365098|gb|EGJ42863.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK355]
Length = 376
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIRKFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRTAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|88800288|ref|ZP_01115855.1| predicted GTPase, probable translation factor [Reinekea blandensis
MED297]
gi|88777003|gb|EAR08211.1| predicted GTPase, probable translation factor [Reinekea sp. MED297]
Length = 363
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/371 (54%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPR ++ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTQAG-IDAENFPFCTIEPNTGVVPVPDPRQDKIAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK++ ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF++++++HV+ +V
Sbjct: 60 PQKSIATTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDNDNVIHVSNQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSK-LKDAEKAALEKIQQALMDG 232
DP SD++VIN EL +DL+ ++K++ KL KK K +D ++K L D LEKI+ AL D
Sbjct: 120 DPASDIEVINTELALADLESVDKQLLKLQKKAKGQDKEAKRLADL----LEKIKPALDDA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RSV L D E+ +KQ LLT KP +Y+ANV E +NP++++V +A++ +
Sbjct: 176 KPVRSVDLTDDEKADLKQFNLLTTKPTLYIANVNEDGFE---NNPYLDKVRAIAAEENAE 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I ++E+E+ EL +E+ E+LA LG+ E GL +IR+ Y LLGL+T+FT+G KE +A
Sbjct: 233 VVAICNKLESEIVELEDDEKAEFLADLGMEEPGLNRVIRAAYQLLGLQTFFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT++ G TAP AAGVIH+DFEKGFIRAETVAYDDF+ + A+E G R EGKDYIV+
Sbjct: 293 WTVKIGATAPNAAGVIHTDFEKGFIRAETVAYDDFITYNGESGAKEAGKWRLEGKDYIVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 353 DGDVMHFRFNV 363
>gi|50085194|ref|YP_046704.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
ADP1]
gi|49531170|emb|CAG68882.1| putative GTP-binding protein [Acinetobacter sp. ADP1]
Length = 367
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 267/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ IN EL +DLD + K + +L K K+ D ++ A KA LEKIQ L +GK
Sbjct: 124 DPLDDIATINTELALADLDTVAKALLRLTKVAKSGDKEAL---ATKAVLEKIQPLLDEGK 180
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 181 PARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIV 237
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +AW
Sbjct: 238 VPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVRAW 297
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G R EGK Y+VQ+
Sbjct: 298 TVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAGKWRLEGKTYVVQD 357
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 358 GDVLHFRFNV 367
>gi|299770489|ref|YP_003732515.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
oleivorans DR1]
gi|375134482|ref|YP_004995132.1| translation-associated GTPase [Acinetobacter calcoaceticus PHEA-2]
gi|424055859|ref|ZP_17793382.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
nosocomialis Ab22222]
gi|425742615|ref|ZP_18860719.1| GTP-binding protein YchF [Acinetobacter baumannii WC-487]
gi|445432517|ref|ZP_21439262.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC021]
gi|298700577|gb|ADI91142.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
oleivorans DR1]
gi|325121927|gb|ADY81450.1| translation-associated GTPase [Acinetobacter calcoaceticus PHEA-2]
gi|407438350|gb|EKF44894.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
nosocomialis Ab22222]
gi|425486441|gb|EKU52809.1| GTP-binding protein YchF [Acinetobacter baumannii WC-487]
gi|444758813|gb|ELW83303.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC021]
Length = 363
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 175 GKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y+V
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|34763377|ref|ZP_00144329.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
gi|27886950|gb|EAA24070.1| GTP-binding protein [Fusobacterium nucleatum subsp. vincentii ATCC
49256]
Length = 364
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 271/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++I+HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNIIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ ++K + EKL + K K+S + + L KI++ L + K +
Sbjct: 125 IEVINTELIFADIETVDKAIEKHEKLARNKIKESVELM-----SVLPKIKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|410457454|ref|ZP_11311263.1| GTP-binding protein YchF [Bacillus bataviensis LMG 21833]
gi|409925152|gb|EKN62378.1| GTP-binding protein YchF [Bacillus bataviensis LMG 21833]
Length = 366
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 273/372 (73%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPD RL L+ L +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDHRLQKLTELVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICQVVRCFADENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++ INLEL+ +D++ +EKR+ EKL K K KD+ AE L ++ A
Sbjct: 120 DPIDDIETINLELILADMESVEKRISRVEKLAKQKDKDAA-----AEFEVLAMLRDAFEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V + + +K L LLT+KP++YVANV+E ++A+P N +V +V A +
Sbjct: 175 EKPARTVDFTEEQMKLVKGLHLLTIKPVLYVANVSEDEVANPSDNEYVQKVREFAKADNA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ I A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+G +E +
Sbjct: 235 EVIIICAKIEEEIAELEGEEKQMFLEELGIEESGLDQLIRAAYHLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GM APQ AGVIHSDFE+GFIRAETV+YDD +AAGS AA+E G +R EGK+Y V
Sbjct: 295 AWTFRKGMKAPQCAGVIHSDFERGFIRAETVSYDDLLAAGSHTAAKEAGKVRLEGKEYEV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|341820468|emb|CCC56748.1| GTP-binding translation factor YchF [Weissella thailandensis
fsh4-2]
Length = 367
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 271/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+D+DI HV+GK+
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ IN ELV +DL+ I+KR +++K AK ++ K AE A LE+++ AL GKP
Sbjct: 120 DPLEDIETINTELVLADLESIDKRYSRVEKS-AKSAKDKDAIAELAVLEQLKPALEAGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ ++ E+ I L LLT KP++YVANV+E D+ADP + + ++ A +G +
Sbjct: 179 ARSIDWDEDEQKIIHDLFLLTSKPVLYVANVSEDDMADPSESEYYQQIQQYAESEGAGVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+ E E+ E+ E++ E++ G++E GL LIR+ Y +L LRT+FT+G KET+AWT
Sbjct: 239 GISARAEEEIAEMDDEDKAEFMELQGITEPGLNRLIRAAYHMLDLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
RAGM APQ AGVIHSDFE+GFIRAETV+++D S+ A +E G RSEGK+Y+VQ+G
Sbjct: 299 FRAGMKAPQVAGVIHSDFERGFIRAETVSFEDLDNYVSMKAIKEAGRRRSEGKEYVVQDG 358
Query: 415 DVMLFRFNV 423
D++ F FNV
Sbjct: 359 DIIEFLFNV 367
>gi|195977161|ref|YP_002122405.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225867622|ref|YP_002743570.1| GTP-binding protein [Streptococcus equi subsp. zooepidemicus]
gi|414562961|ref|YP_006041922.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
gi|195973866|gb|ACG61392.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus MGCS10565]
gi|225700898|emb|CAW97559.1| putative GTP-binding protein [Streptococcus equi subsp.
zooepidemicus]
gi|338846026|gb|AEJ24238.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. zooepidemicus ATCC 35246]
Length = 371
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 276/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+GK AR+++ D E+ ++QL LLT KP++YVANV E +A P + +V ++ + A+
Sbjct: 179 EGKSARTISFTDDEQKIVRQLFLLTTKPVLYVANVDEDKVATPDAIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKLEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|392961548|ref|ZP_10327005.1| GTP-binding protein YchF [Pelosinus fermentans DSM 17108]
gi|421055463|ref|ZP_15518426.1| GTP-binding protein YchF [Pelosinus fermentans B4]
gi|421061288|ref|ZP_15523639.1| GTP-binding protein YchF [Pelosinus fermentans B3]
gi|421064203|ref|ZP_15526102.1| GTP-binding protein YchF [Pelosinus fermentans A12]
gi|421072345|ref|ZP_15533456.1| GTP-binding protein YchF [Pelosinus fermentans A11]
gi|392439846|gb|EIW17547.1| GTP-binding protein YchF [Pelosinus fermentans B4]
gi|392445982|gb|EIW23284.1| GTP-binding protein YchF [Pelosinus fermentans A11]
gi|392450674|gb|EIW27704.1| GTP-binding protein YchF [Pelosinus fermentans B3]
gi|392453666|gb|EIW30534.1| GTP-binding protein YchF [Pelosinus fermentans DSM 17108]
gi|392461523|gb|EIW37708.1| GTP-binding protein YchF [Pelosinus fermentans A12]
Length = 368
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 275/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLPHLVEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K+++ +P ++ FVDIAGLVKGAS+GEGLGNKFL+HIR+VD++ QVVRCFED +I HV G
Sbjct: 60 YKTKRCIPTAMRFVDIAGLVKGASKGEGLGNKFLAHIRQVDAVAQVVRCFEDENITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMD 231
++P D+++IN EL +DLD +EKRME+++K K D ++ E A L KI++ L
Sbjct: 120 ALNPLRDIEIINTELCLADLDTLEKRMERVQKLIKTGDKKAP---NEMAVLVKIKELLEQ 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
PAR V + + E I L L+T+KP++++ANV+E ++A+ N +V V A + +
Sbjct: 177 ALPARRVDMTEDEAGLIGDLNLMTLKPVLFIANVSEDEVANAEDNEYVKIVKKYAVEEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+VE+E+ ELP+E+ E+LA LG+ ESGL LI+++Y LLGL T+ T+GE+E +
Sbjct: 237 EVIAVSAKVESEIAELPAEDAKEFLAELGLKESGLDKLIKASYKLLGLVTFLTAGEQEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI+ G APQA G IHSD E+GFIRAE V+Y+D V GS AAREKGL+R EGK+YI+
Sbjct: 297 AWTIKKGTKAPQAGGKIHSDIERGFIRAEIVSYNDLVLTGSSNAAREKGLVRLEGKEYIM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV FRFNV
Sbjct: 357 QDGDVTYFRFNV 368
>gi|289766198|ref|ZP_06525576.1| GTP-binding protein [Fusobacterium sp. D11]
gi|289717753|gb|EFD81765.1| GTP-binding protein [Fusobacterium sp. D11]
Length = 364
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLA--AGNKYVESVKEFAKGIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKISQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|421075158|ref|ZP_15536173.1| GTP-binding protein YchF [Pelosinus fermentans JBW45]
gi|392526600|gb|EIW49711.1| GTP-binding protein YchF [Pelosinus fermentans JBW45]
Length = 368
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 275/372 (73%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL L +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDERLPHLVEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K+++ +P ++ FVDIAGLVKGAS+GEGLGNKFL+HIR+VD++ QVVRCFED +I HV G
Sbjct: 60 YKTKRCIPTAMRFVDIAGLVKGASKGEGLGNKFLAHIRQVDAVAQVVRCFEDENITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMD 231
++P D+++IN EL +DLD +EKRME+++K K D ++ E A L KI++ L
Sbjct: 120 ALNPLRDIEIINTELCLADLDTLEKRMERVQKLIKTGDKKAP---NEMAVLVKIKELLEQ 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
PAR + + E I L L+T+KP++++ANV+E ++A+ N +V V A + +
Sbjct: 177 ALPARRANMTEDEAGLIGDLNLMTLKPVLFIANVSEEEVANAEDNEYVKIVRKYAVEEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ +SA+VE+E+ ELP+E+ E+LA LG+SESGL LI+++Y LLGL T+ T+GE+E +
Sbjct: 237 EVIAVSAKVESEIAELPAEDAKEFLAELGLSESGLDKLIKASYKLLGLVTFLTAGEQEVR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI+ G APQA G IHSD E+GFIRAE V+Y+D V GS AAREKGL+R EGK+Y++
Sbjct: 297 AWTIKKGTKAPQAGGKIHSDIERGFIRAEIVSYNDLVLTGSSNAAREKGLVRLEGKEYVM 356
Query: 412 QEGDVMLFRFNV 423
Q+GDV FRFNV
Sbjct: 357 QDGDVTYFRFNV 368
>gi|114704352|ref|ZP_01437260.1| hypothetical protein FP2506_05446 [Fulvimarina pelagi HTCC2506]
gi|114539137|gb|EAU42257.1| hypothetical protein FP2506_05446 [Fulvimarina pelagi HTCC2506]
Length = 367
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 200/374 (53%), Positives = 269/374 (71%), Gaps = 12/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPD RL ++G++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDSRLKNIAGIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV GK+
Sbjct: 61 SANVIPTRITFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDEDIAHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ +DL+ +E+R+ +K GK K++ ++L +EK +AL D
Sbjct: 121 DPVADAETVETELMIADLESLERRVVNTRKKATGKDKEALAQLP-----VMEKALEALND 175
Query: 232 GKPARSVT--LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKP R++ L+ +R +++ L LLT KP++YV NVAE+D A N H +V +A
Sbjct: 176 GKPVRTIVEDLDPEDRRTLRALNLLTSKPVLYVCNVAENDAAT--GNHHAADVAKMAESQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+G V ISA +EAE+ +L E E+L ++G++E GL LIR+ Y LL L TYFT+G KE
Sbjct: 234 GAGAVVISAAIEAEIAQLDEAETSEFLETMGLTEPGLDRLIRAGYDLLDLITYFTAGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT+ G APQAAGVIH+DFEKGFIRA+T+AYDD+V G A++ G R EGK+Y
Sbjct: 294 TRAWTVHNGAKAPQAAGVIHTDFEKGFIRAQTIAYDDYVTLGGEVPAKDAGKARDEGKEY 353
Query: 410 IVQEGDVMLFRFNV 423
+V +GDVMLF+FNV
Sbjct: 354 VVADGDVMLFKFNV 367
>gi|260495639|ref|ZP_05815763.1| GTP-binding protein [Fusobacterium sp. 3_1_33]
gi|260196822|gb|EEW94345.1| GTP-binding protein [Fusobacterium sp. 3_1_33]
Length = 364
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVELVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|330999046|ref|ZP_08322771.1| GTP-binding protein YchF [Parasutterella excrementihominis YIT
11859]
gi|329575788|gb|EGG57314.1| GTP-binding protein YchF [Parasutterella excrementihominis YIT
11859]
Length = 364
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL L+ +
Sbjct: 1 MGLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAKLAEIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I +VRCF D++IVHV G V
Sbjct: 60 PQRIVPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAIAHIVRCFNDDNIVHVAGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+ VIN+EL +DL ++K++ K K +A+ K LEKI+ AL +GKP
Sbjct: 120 APLEDISVINMELALADLASVDKQLNKYTK-QARSGGDKEALKLVTVLEKIRPALNEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+ E+ IKQLCLLTMKP++YVANV E + N + EV + + ++ V
Sbjct: 179 ARSVDLSKDEKAVIKQLCLLTMKPVMYVANVEEDGFEN---NALLEEVKAVGVEEKAPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++EAE+++LP EE+ +L +G+ E GL +IR+ Y LLGL TYFT+G KE +AWT
Sbjct: 236 AVCAKIEAEISDLPDEEKQIFLEDIGMHEPGLNRVIRAAYQLLGLETYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G LR EGKDY+VQ+G
Sbjct: 296 IHKGDLAPQAAGVIHTDFERGFIRAQTISYDDFVQYKGEAGAKEAGKLRVEGKDYVVQDG 355
Query: 415 DVMLFRFNV 423
D+M F FNV
Sbjct: 356 DIMNFLFNV 364
>gi|326796208|ref|YP_004314028.1| GTP-binding protein YchF [Marinomonas mediterranea MMB-1]
gi|326546972|gb|ADZ92192.1| GTP-binding protein YchF [Marinomonas mediterranea MMB-1]
Length = 363
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN GIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGIVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV +V
Sbjct: 60 PERVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P +D++VINLEL+F+DL+ I+K++ + K S +K A KA LE I+Q L DGKP
Sbjct: 120 NPTADIEVINLELIFADLESIDKQI--FRTAKTAKSGNKDAIAHKAFLESIKQHLEDGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ D + +KQL LLT KP +Y+ANV+E + NPH+ V +A+ + V
Sbjct: 178 VRTMEFTDDQAKEVKQLHLLTTKPTMYIANVSEDGFEN---NPHLEVVTKIAASEGAMVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I Q+EAE++EL +EE ++L +G+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 PICNQLEAEISELDAEEMQDFLDEMGMSEPGLDRVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQ+AGVIH+DFEKGFIRAE V+YDDF+ A++ G R EGKDYIV++G
Sbjct: 295 VKQGATAPQSAGVIHTDFEKGFIRAEVVSYDDFIQYQGENGAKDAGKWRLEGKDYIVKDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|118443130|ref|YP_878006.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium novyi
NT]
gi|118133586|gb|ABK60630.1| GTP-binding protein YchF [Clostridium novyi NT]
Length = 365
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 273/370 (73%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYDTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF D++IVHV G +DP
Sbjct: 60 KKVYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFNDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD--AEKAALEKIQQALMDGKP 234
D++ INLEL+ +DL+ IE+R EK A+ ++S +K+ AE LEK+++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TARSARSGVKEAKAELPVLEKVKEHLEANKP 175
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKEEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENEFVKKVKEYAKEEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AAG IH+D E+GFIRAE V+YDD V GS AAA+EKGL R EGKDY++Q+
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYDDLVECGSEAAAKEKGLYRLEGKDYVMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVNFRFNV 365
>gi|422872073|ref|ZP_16918566.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1087]
gi|328945178|gb|EGG39333.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1087]
Length = 376
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVYYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|197119138|ref|YP_002139565.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter
bemidjiensis Bem]
gi|197088498|gb|ACH39769.1| GTP-dependent translational factor YchF, putative [Geobacter
bemidjiensis Bem]
Length = 364
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 268/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIVAVPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVAVPDPRMDRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCF++ ++VHV+G V
Sbjct: 60 PERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D++VI EL +DLD +EKR+++ +K +A+ K K+ L K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLQRTEK-QARSGDKKAKEDVDFCL-KVKSTLEQGLS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G V
Sbjct: 178 PRDMAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I +EAE++EL EE+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AWT
Sbjct: 236 FICGSIEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIHSDFEKGFIRAE +AY D++A+G A A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 ITKGTKAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|153855364|ref|ZP_01996513.1| hypothetical protein DORLON_02527 [Dorea longicatena DSM 13814]
gi|149752184|gb|EDM62115.1| GTP-binding protein YchF [Dorea longicatena DSM 13814]
Length = 366
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 278/370 (75%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+++IVHV+G ++P
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENSNIVHVDGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K+ K A++ +S K E L K++ L DGK A+
Sbjct: 120 LRDIETINLELIFSDLEILERRISKVSK-VARNDKSAAK--ELGLLNKVKAHLEDGKLAK 176
Query: 237 SVTLNDFERDS--IKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGR 293
+ D E + ++ LLT KP+IY ANV+E DLAD +N V V A QS
Sbjct: 177 TFEEVDDEEEQAWLESYNLLTYKPVIYAANVSEDDLADDAANNEGVQAVREYAKGEQSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ A++EAE++EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AW
Sbjct: 237 FVVCAEIEAEISELDDDEKKMFLEDLGLKESGLEKLIKASYKLLGLISYLTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IHSDFE+GFIRAE V+YDD +A GS AA+EKGL+R EGKDY+V++
Sbjct: 297 TITEGTKAPQAAGKIHSDFERGFIRAEVVSYDDLIACGSHTAAKEKGLIRLEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|225869492|ref|YP_002745439.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus equi
subsp. equi 4047]
gi|225698896|emb|CAW91880.1| putative GTP-binding protein [Streptococcus equi subsp. equi 4047]
Length = 371
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 275/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEK-MARTQKDKDSVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+GK AR+++ D E+ ++QL LLT KP++YVANV E +A P + +V ++ + A+
Sbjct: 179 EGKSARTISFTDDEQKIVRQLFLLTTKPVLYVANVDEDKVAIPDAIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|293375545|ref|ZP_06621819.1| GTP-binding protein YchF [Turicibacter sanguinis PC909]
gi|325845113|ref|ZP_08168424.1| GTP-binding protein YchF [Turicibacter sp. HGF1]
gi|292645762|gb|EFF63798.1| GTP-binding protein YchF [Turicibacter sanguinis PC909]
gi|325488855|gb|EGC91253.1| GTP-binding protein YchF [Turicibacter sp. HGF1]
Length = 366
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-IEAANYPFATIDPNVGVVEVPDERLNKLTELVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAGLV+GAS GEGLGNKFL++IREVD+I QVVRCFED +I+HV G V
Sbjct: 60 PKKTVPTTFEFTDIAGLVRGASNGEGLGNKFLANIREVDAITQVVRCFEDGNIIHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP DV+VINLEL+ +D++Q+++R+ +L K+ K+ D +K AE A LEK+++
Sbjct: 120 DPVRDVEVINLELILADMEQVDRRLTRLAKQAKSGDKDAK---AEVAVLEKVKEGFDQEL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ L+D ++ +IK L LLT+KPI+YVANV E DL N +V ++ A +
Sbjct: 177 PARAMDLSDDDKAAIKHLQLLTLKPILYVANVGEDDLMAGEDNEYVKALVEYADREGAKV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+++L EE+ +L LG+ ESGL LIR Y LLGL TYFT+G +E +AW
Sbjct: 237 IKVCARIEEEISQLEEEEKAAFLEELGIKESGLDQLIREAYDLLGLATYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GMTAPQ AG+IHSDFE+GFIRAETV++DD V GS AARE G R EGK YIVQ+
Sbjct: 297 TFIKGMTAPQCAGIIHSDFERGFIRAETVSFDDLVKYGSELAAREAGRYRLEGKSYIVQD 356
Query: 414 GDVMLFRFNV 423
GDVMLFRFNV
Sbjct: 357 GDVMLFRFNV 366
>gi|85373990|ref|YP_458052.1| GTP-dependent nucleic acid-binding protein EngD [Erythrobacter
litoralis HTCC2594]
gi|84787073|gb|ABC63255.1| GTPase [Erythrobacter litoralis HTCC2594]
Length = 366
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 267/371 (71%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL ++ ++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVAVPDERLDKIAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K + + FVDIAGLVKGASQGEGLGN+FL +IREVD+I+ V+RCFED+DI HV+ +V
Sbjct: 61 SAKVIATQLAFVDIAGLVKGASQGEGLGNQFLGNIREVDAIVHVLRCFEDDDIQHVSNRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D +V+ EL+ +DL+ +EKR+ K+ A D ++KL + L + + L +GK
Sbjct: 121 DPLADAEVVETELMLADLESLEKRVPNAEKRATAGDKEAKLT---ASVLGQALELLREGK 177
Query: 234 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR D E I +Q LLT KP++YV NVAE D A+ N +V A +
Sbjct: 178 PARLTEPKDDEEARIFQQAQLLTAKPVLYVCNVAEEDAAE--GNDLSAQVFAKADAEGAQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V +SA +EAEL + E+R EYLA LG+ ESGL +IR+ Y+LLGL+T+FT+G KE++A
Sbjct: 236 AVVVSAAIEAELVGMEPEDRAEYLAELGLKESGLARVIRAGYTLLGLQTFFTAGPKESRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT G APQAAG IH+DFEKGFIRAET+AYDD+V+ G AAARE G LR EGK+Y+VQ
Sbjct: 296 WTFPTGAKAPQAAGEIHTDFEKGFIRAETIAYDDYVSLGGEAAAREAGKLRQEGKEYLVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLF+FNV
Sbjct: 356 DGDVMLFKFNV 366
>gi|386716427|ref|YP_006182751.1| translation-associated GTPase [Halobacillus halophilus DSM 2266]
gi|384075984|emb|CCG47481.1| translation-associated GTPase [Halobacillus halophilus DSM 2266]
Length = 365
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 283/371 (76%), Gaps = 8/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A +AN+PF TI+PNVGIV VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-ALSANYPFATIDPNVGIVEVPDSRLEKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I VVR FED ++ HV+G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICHVVRAFEDENVTHVSGEV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP +D++ INLEL+ +DL+ + KRM+++ AK ++ K KDA E LEK++++L +
Sbjct: 120 DPITDIETINLELILADLETVSKRMDRV----AKMARQKDKDAVAEYTVLEKLKESLEEE 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR+V +D + +K L LLT KPI+YVANV+E ++ + G N V ++ A+ +
Sbjct: 176 TPARAVEFSDDQEKIVKGLHLLTSKPILYVANVSEDEIGE-GDNEKVKQIREFAAKENAE 234
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ I A++E+E+ EL EE+ E+L LG+ ESGL LI++TY+LLGL TYFT+GE+E +A
Sbjct: 235 VIVICAKIESEIAELDGEEKEEFLDDLGIEESGLDQLIKATYNLLGLATYFTAGEQEVRA 294
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GMTAPQAAGVIH+DF++GFIRAETV+Y+D V AG++ AR++G +R EGK+Y+V+
Sbjct: 295 WTFKEGMTAPQAAGVIHTDFQRGFIRAETVSYEDLVDAGTMGVARDRGRVRLEGKEYLVR 354
Query: 413 EGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 355 DGDVIHFRFNV 365
>gi|225028102|ref|ZP_03717294.1| hypothetical protein EUBHAL_02372 [Eubacterium hallii DSM 3353]
gi|224954572|gb|EEG35781.1| GTP-binding protein YchF [Eubacterium hallii DSM 3353]
Length = 365
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 277/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PN+GIVAVPD RL VLS + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNIGIVAVPDQRLKVLSDMYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KIVPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ IN EL+FSD++ +++R+ K + D + AE L+K++ L DG+ A+
Sbjct: 120 LRDIETINFELIFSDIEVLDRRISKSARAAHNDKKIA---AEVEFLKKVKAHLEDGQLAK 176
Query: 237 SVTLNDFERDSIKQLC-LLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
+ D + ++ C LLT KP+I+ ANV+E DLAD G+ N +V +V A ++
Sbjct: 177 TFVTEDEDEQALLNECNLLTAKPVIFAANVSEDDLADDGAENDYVQKVREYAKSCEAEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++YSLLGL +Y T+G E+KAWT
Sbjct: 237 VVCAQIEQEIAELDDDEKAMFLEDLGLKESGLEKLIKASYSLLGLISYLTAGPIESKAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAG IHSDFE+GFI+A+ ++Y+D +A GS+ AAR+KGL+RSEGK+Y++Q+G
Sbjct: 297 ITRGTKAPQAAGKIHSDFERGFIKADVISYEDLIANGSMTAARDKGLVRSEGKEYVMQDG 356
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 357 DVVLFKFNV 365
>gi|255319209|ref|ZP_05360426.1| GTP-binding protein YchF [Acinetobacter radioresistens SK82]
gi|421465005|ref|ZP_15913693.1| GTP-binding protein YchF [Acinetobacter radioresistens WC-A-157]
gi|255303602|gb|EET82802.1| GTP-binding protein YchF [Acinetobacter radioresistens SK82]
gi|400204267|gb|EJO35251.1| GTP-binding protein YchF [Acinetobacter radioresistens WC-A-157]
Length = 363
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA + +
Sbjct: 175 GKPARAADLSDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G R EGK YIV
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAGKWRLEGKTYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|262379712|ref|ZP_06072868.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
gi|262299169|gb|EEY87082.1| conserved hypothetical protein [Acinetobacter radioresistens SH164]
Length = 367
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 124 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 178
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA + +
Sbjct: 179 GKPARAADLSDDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEENA 235
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 236 IVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 295
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G R EGK YIV
Sbjct: 296 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAGKWRLEGKTYIV 355
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 356 QDGDVMHFRFNV 367
>gi|422849794|ref|ZP_16896470.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK115]
gi|422863857|ref|ZP_16910487.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK408]
gi|422864849|ref|ZP_16911474.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1058]
gi|422880554|ref|ZP_16927017.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1059]
gi|422883019|ref|ZP_16929468.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK49]
gi|422929983|ref|ZP_16962923.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis ATCC 29667]
gi|422930432|ref|ZP_16963363.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK340]
gi|325689358|gb|EGD31364.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK115]
gi|327471612|gb|EGF17055.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK408]
gi|327490342|gb|EGF22129.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1058]
gi|332363610|gb|EGJ41391.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1059]
gi|332364168|gb|EGJ41945.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK49]
gi|339613616|gb|EGQ18352.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis ATCC 29667]
gi|339621217|gb|EGQ25780.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK340]
Length = 376
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|291563995|emb|CBL42811.1| GTP-binding protein YchF [butyrate-producing bacterium SS3/4]
Length = 365
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +LS L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDFRLKLLSDLYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ I++R+ K+ KG A +K E L+ +++ L +G A+
Sbjct: 120 LRDIETINLELIFSDIEVIDRRIAKMGKGAA---SNKALAKELNILKAVKEHLENGNLAK 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S D E + + L LLT KP+I+ ANV E DLAD G SNPHV V AS+ S
Sbjct: 177 SFECEDDEEQAFVASLDLLTWKPVIFAANVGEDDLADDGASNPHVQAVRKFASENDSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E++EL +E+ +L LG+ ESGL LI ++Y LLGL +Y T+GEKET+AWT
Sbjct: 237 VVCAQIEEEISELDDDEKKMFLDDLGLKESGLDKLIAASYRLLGLISYLTAGEKETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A+EKGL+R EGKDY++++G
Sbjct: 297 IKVGTKAPQAAGKIHTDFERGFIKAEVVNYKDLLDCGSYNGAKEKGLVRMEGKDYVMKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|414175241|ref|ZP_11429645.1| GTP-binding protein YchF [Afipia broomeae ATCC 49717]
gi|410889070|gb|EKS36873.1| GTP-binding protein YchF [Afipia broomeae ATCC 49717]
Length = 365
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 262/371 (70%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SQQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
P +D++ I EL+ +DLD +EKR++ L KG KD++ +L+ E+A + L D
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDSLSKKAKGNDKDAKEQLELVERAL-----KLLRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR + E + + L LLT KP++YV NV E A N +V A +
Sbjct: 176 GKPARFLERKAEEERAFRMLGLLTSKPVLYVCNVEEG--AAATGNSFSQQVFEHAKKEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +
Sbjct: 234 VAVAISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEAR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP AAGVIH+DFEKGFIRAET+AYDD++A G A AR+ G LR EGK+Y+V
Sbjct: 294 AWTITKGTKAPAAAGVIHTDFEKGFIRAETIAYDDYIANGGEAGARDTGKLRLEGKEYVV 353
Query: 412 QEGDVMLFRFN 422
+GDVM FRFN
Sbjct: 354 ADGDVMHFRFN 364
>gi|238020001|ref|ZP_04600427.1| hypothetical protein VEIDISOL_01877 [Veillonella dispar ATCC 17748]
gi|237863525|gb|EEP64815.1| hypothetical protein VEIDISOL_01877 [Veillonella dispar ATCC 17748]
Length = 397
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/404 (52%), Positives = 287/404 (71%), Gaps = 8/404 (1%)
Query: 21 MESSLFTRNANLIGVLGITTTSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENG 80
M +F RN L+ T + +S +L GIVGLPNVGKSTLFNA+ + G
Sbjct: 1 MFDKVFIRNMFLMKAF---TKNEINVLIKGGTMSTNLEVGIVGLPNVGKSTLFNAITKAG 57
Query: 81 KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140
A+AAN+PFCTIEPNVG+V VPD RL VL+ + S++ +PA++ FVDIAGLV+GAS+GEG
Sbjct: 58 -AEAANYPFCTIEPNVGVVDVPDNRLAVLAEMFGSKRILPAAMRFVDIAGLVEGASKGEG 116
Query: 141 LGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRME 200
LGNKFLSHIR+VD+I QV+RCF+D +I HV+G +DP D+++IN EL +DL+ +EKR +
Sbjct: 117 LGNKFLSHIRQVDAIAQVIRCFDDPNITHVSGSIDPIRDIEIINTELCLADLESVEKRKQ 176
Query: 201 KLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPI 259
+++K K+ D ++ AE LE+I + L + KP R+ L + E + IK+L LLT KP
Sbjct: 177 RIEKIAKSGDKDAR---AELPLLERIIEGLGEAKPVRAQGLEEEELEMIKELTLLTAKPS 233
Query: 260 IYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASL 319
+YVAN++E +++D SN +V V A + +G V +SA++E+E+ EL EE +L L
Sbjct: 234 LYVANISEDEVSDYSSNEYVKRVEEYAKNEGAGIVVVSARIESEIAELSEEESAAFLEDL 293
Query: 320 GVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRA 379
G+ ESGL LI+++Y+LLGL YFT+GE E +AWTI G APQAAG IHSD EKGFIRA
Sbjct: 294 GLEESGLTKLIKASYALLGLINYFTAGEMEARAWTIVNGTKAPQAAGKIHSDIEKGFIRA 353
Query: 380 ETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
E V++DD A GS AA+EKGL+R EGKDY++++GDV FRFNV
Sbjct: 354 EIVSFDDLQACGSQNAAKEKGLVRLEGKDYVMKDGDVTHFRFNV 397
>gi|189425648|ref|YP_001952825.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter lovleyi
SZ]
gi|189421907|gb|ACD96305.1| GTP-binding protein YchF [Geobacter lovleyi SZ]
Length = 364
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 264/369 (71%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV VPDPR+ LS + K
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNAITSAG-AESANYPFCTIDPNVGIVQVPDPRIDQLSAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK ++EFVDIAGLVKGAS GEGLGN+FL HIR VD+++ VVRCF+D+++VHV GKV
Sbjct: 60 PQKCQFTTIEFVDIAGLVKGASAGEGLGNQFLGHIRSVDAVVHVVRCFDDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+++IN EL SDLD +EK++ L+ K S K E A E+I+ L GK
Sbjct: 120 SPADDIEIINTELALSDLDTLEKKV--LRAEKLARSGDKKAKEEVALYERIKGLLEQGKK 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R N+ ER ++ L LLT KP++YVANVAE DL G +P V +V +A+ +G V
Sbjct: 178 VRDCAENEDERIWLRDLHLLTAKPVLYVANVAEDDL--EGKHPFVAQVREIAAAEGAGVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I ++EAE+ EL +E++ +L +G+ ESGL LIR+ Y LLGL TYFT+G KE +AWT
Sbjct: 236 VICGKIEAEIAELDGDEKLAFLQEMGLQESGLDRLIRAGYDLLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAGVIHSDFEKGFIRAE + ++D++A + A+EKGL+R EGK+Y+V++G
Sbjct: 296 ITRGTKAPQAAGVIHSDFEKGFIRAEVIGFEDYIACNGESGAKEKGLMRLEGKEYVVKDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|424741588|ref|ZP_18169932.1| GTP-binding protein YchF [Acinetobacter baumannii WC-141]
gi|422944646|gb|EKU39635.1| GTP-binding protein YchF [Acinetobacter baumannii WC-141]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 175 GKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y+V
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|339500973|ref|YP_004699008.1| GTP-binding protein YchF [Spirochaeta caldaria DSM 7334]
gi|338835322|gb|AEJ20500.1| GTP-binding protein YchF [Spirochaeta caldaria DSM 7334]
Length = 369
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 212/372 (56%), Positives = 271/372 (72%), Gaps = 6/372 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKST+F+A+ A+AAN+PFCTI PNVGIV VPD RL L+ + K
Sbjct: 1 MALNCGIVGLPNVGKSTIFSALT-RAPAEAANYPFCTINPNVGIVDVPDNRLKKLAEIFK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PASVEFVDIAGLVKGASQGEGLGN+FLSHIREV I QVVRCFE+ DI+HV+ KV
Sbjct: 60 PKRVIPASVEFVDIAGLVKGASQGEGLGNQFLSHIREVGVIAQVVRCFENPDIIHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP+SD++ IN+EL +DLD + KR EK + + + K AE +AL+K+Q AL G
Sbjct: 120 DPESDMETINVELALADLDTVAKRREKAVRALKVQGKDQQKQAELLISALDKVQPALEQG 179
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARSV L+D ER ++ L+TMKP +YV NV E + + N +V+ V A+ S
Sbjct: 180 KPARSVPLSDDERAALYDSHLITMKPQLYVCNVDEEGMRN--GNRYVDMVKARAAAENSE 237
Query: 293 RVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I + EAEL +L S EER+ +L+ LG++ESGL +LI + Y LLGLRT+FT+GE E +
Sbjct: 238 AVVICGKFEAELADLESEEERLAFLSELGLAESGLASLIHAAYRLLGLRTFFTAGEDECR 297
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI AG APQAAGVIH+DFEKGFI+AE +Y+D + GS A +E G R EGK+Y+V
Sbjct: 298 AWTIHAGDKAPQAAGVIHTDFEKGFIKAEVYSYEDLLTYGSEAKIKEAGKYRIEGKEYVV 357
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F+FNV
Sbjct: 358 QDGDVMFFKFNV 369
>gi|313888117|ref|ZP_07821791.1| GTP-binding protein YchF [Peptoniphilus harei ACS-146-V-Sch2b]
gi|312845807|gb|EFR33194.1| GTP-binding protein YchF [Peptoniphilus harei ACS-146-V-Sch2b]
Length = 362
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/368 (55%), Positives = 276/368 (75%), Gaps = 7/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PF TIEPNVG+V VPD RL VLS L+ SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTSAG-AEAANYPFATIEPNVGVVNVPDERLEVLSKLNNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ + ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +I+HV+G VDP
Sbjct: 60 RIIYTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDENIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+FSDL+Q+E R K+ KK +A+ + +K E+ LEKI+ AL +G+ A
Sbjct: 120 LRDIENINLELIFSDLEQVENRYGKVAKKARAEKNLAK----ERDLLEKIKTALEEGRSA 175
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
R V L++ E+ IK LL+ KP+IYV NVAE +L N +V EV A V
Sbjct: 176 REVELDEEEKKIIKNYSLLSAKPVIYVCNVAEGELT-KDDNKYVKEVREYAEKTGDEVVV 234
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++E+E+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+GE ET+AWT+
Sbjct: 235 ISAEIESEIAALDEDEKELFLEELGLDSSGLDKLIKSSYKLLGLISFITTGEMETRAWTV 294
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G AP AAG IH+D E+GFI+A+T++Y D V +GS+A AR+KGL+RSEGKDY+V++GD
Sbjct: 295 KKGSKAPVAAGKIHTDMERGFIKADTISYKDLVDSGSMANARDKGLIRSEGKDYVVEDGD 354
Query: 416 VMLFRFNV 423
V++F+FNV
Sbjct: 355 VIVFKFNV 362
>gi|388457342|ref|ZP_10139637.1| GTP-binding protein YchF [Fluoribacter dumoffii Tex-KL]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 267/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDPRLDALSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +PA+++FVDIAG+VKGAS+GEGLGN+FL++IRE D+I VVRCFE+ D+VHV GKV
Sbjct: 60 PQQVLPATMQFVDIAGIVKGASKGEGLGNQFLANIRETDAIAHVVRCFENTDVVHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L +G P
Sbjct: 120 HPLSDIEVINTELALADMETLEKAI--LKAGKNSRSGNKEAIFEMKTLEKIKAHLDEGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L+ E ++L LLT KP++Y+ANV + + NP +++V NLA+ ++ V
Sbjct: 178 VRTLELSAEEEPVARRLFLLTAKPVLYIANVDDEGYEN---NPLLDQVRNLAAQEKASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL +R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEADRQEFMEDLGLSEPGLHRVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIHSDFEKGFIRAE +AYD F+A A+E G LR EGKDYIV +G
Sbjct: 295 IPKGATAPQAAGVIHSDFEKGFIRAEVIAYDAFIACKGEQGAKEAGKLRLEGKDYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|421856340|ref|ZP_16288707.1| putative GTP-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
gi|403188279|dbj|GAB74908.1| putative GTP-binding protein [Acinetobacter radioresistens DSM 6976
= NBRC 102413]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 265/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRIIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L D ER ++ LLT+KP +Y+ANVAE + NPH++ V LA + +
Sbjct: 175 GKPARAANLADDERKLVRGFGLLTLKPTMYIANVAEDGFEN---NPHLDAVRKLAEEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+E+E++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIESEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G R EGK YIV
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYNDFVQYNGEAGAKEAGKWRLEGKTYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|114331141|ref|YP_747363.1| GTP-dependent nucleic acid-binding protein EngD [Nitrosomonas
eutropha C91]
gi|114308155|gb|ABI59398.1| GTP-binding protein YchF [Nitrosomonas eutropha C91]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/371 (56%), Positives = 269/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDSRLAELSKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASRGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D+++I EL +DL +EK + + +K +S K+A K A LEK+ L G
Sbjct: 120 DPLADIEIILTELALADLATVEKAIVR----DSKKMKSGDKEASKLVAVLEKLVLHLNQG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+PAR+ L+D ER+ IK LCLLT+KP +YV NV E + NPH++ + A+ +
Sbjct: 176 QPARTFPLSDEEREIIKSLCLLTIKPAMYVGNVLEDGFEN---NPHLDRLREYAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAKIEAELADLDEADKKEFLADLGLEEPGLNRLIRTGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAG IH+DFEKGFIRA+TV+Y DF+A G A A+EKG +R EGKDYIVQ
Sbjct: 293 WTIHRGDTAPQAAGAIHTDFEKGFIRAQTVSYADFIACGGEAGAKEKGKMRVEGKDYIVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|116617474|ref|YP_817845.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096321|gb|ABJ61472.1| Predicted GTPase, probable translation factor [Leuconostoc
mesenteroides subsp. mesenteroides ATCC 8293]
Length = 366
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 268/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDTRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L GK
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK---AEFVVLEKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 177 SARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAATEGADV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 237 IGLSASAEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G LRSEGK+Y+VQ+
Sbjct: 297 TFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVKAVKEAGKLRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|422822810|ref|ZP_16870999.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK405]
gi|422825227|ref|ZP_16873406.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK678]
gi|422852628|ref|ZP_16899292.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK160]
gi|422856239|ref|ZP_16902896.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1]
gi|324991862|gb|EGC23785.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK405]
gi|324996248|gb|EGC28158.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK678]
gi|325698028|gb|EGD39909.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK160]
gi|327458486|gb|EGF04836.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1]
Length = 376
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDVRLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|384082304|ref|ZP_09993479.1| GTP-binding protein YchF [gamma proteobacterium HIMB30]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 269/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +A NFPFCTIEPN G+V +PDPR L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAQNFPFCTIEPNAGVVPIPDPRQDQLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF+D +IVHV GKV
Sbjct: 60 PERVVPTAMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP+SD++VIN EL +DL+ +EK+M K +K K D +K A A EKI L +G+
Sbjct: 120 DPESDIEVINTELALADLESVEKQMHKAQKQAKGGDKDAK---ALMAVCEKILPVLNEGR 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RSV L+D E IK L LLT+KP +Y+ANVAE D NP +++V +A+ +
Sbjct: 177 PVRSVELSDQELAVIKTLHLLTIKPTLYIANVAEDGFED---NPWLSQVREIAASENAEV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I ++EAE+ EL +E+VE+L LG++E+GL +IR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VPICNKIEAEIAELDDDEKVEFLEELGLAEAGLDRVIRAGYHLLGLQTYFTAGPKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI TAPQAAG IH+DFEKGFIRAE +A+DDFV G AA++ G R EGK+YIV++
Sbjct: 294 TIPVDATAPQAAGKIHTDFEKGFIRAEVIAFDDFVTLGGEQAAKDAGKWRLEGKEYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVVHFRFNV 363
>gi|381335950|ref|YP_005173725.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356643916|gb|AET29759.1| GTPase, translation factor [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 366
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 268/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDTRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L GK
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK---AEFVVLEKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 177 SARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAATEGADV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 237 IGLSASAEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ A +E G LRSEGK+Y+VQ+
Sbjct: 297 TFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVRAVKEAGKLRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|340754447|ref|ZP_08691201.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium sp.
2_1_31]
gi|422314888|ref|ZP_16396339.1| GTP-binding protein YchF [Fusobacterium periodonticum D10]
gi|229423956|gb|EEO39003.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium sp.
2_1_31]
gi|404593205|gb|EKA94803.1| GTP-binding protein YchF [Fusobacterium periodonticum D10]
Length = 364
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 273/367 (74%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLNALAQIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+VDP SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGQVDPISD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ IEK + EKL + K K+S + A L K+++ L + K +
Sbjct: 125 IEVINTELIFADIETIEKAIEKHEKLARNKIKESVELM-----AVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +
Sbjct: 180 TLDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G+LR EGK+YIV +GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVLRLEGKEYIVHDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|406039375|ref|ZP_11046730.1| GTP-binding protein YchF [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 363
Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDARLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K KG KD+ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKALLRLTKSAKGGDKDAI-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ +
Sbjct: 175 GKPARAADLSDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKQLAAEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y+LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMQEPGLNVVIRAGYALLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A A+E G R EGK Y+V
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFVQYNGEAGAKEAGKWRLEGKTYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 352 QDGDVLHFRFNV 363
>gi|256846826|ref|ZP_05552281.1| GTP-binding protein [Fusobacterium sp. 3_1_36A2]
gi|256717792|gb|EEU31350.1| GTP-binding protein [Fusobacterium sp. 3_1_36A2]
Length = 364
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++I+HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNIIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ ++K + EKL + K K+S + + L KI++ L + K +
Sbjct: 125 IEVINTELIFADIETVDKAIEKHEKLARNKIKESVELM-----SVLPKIKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVESVKEFAKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKISQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|169796230|ref|YP_001714023.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AYE]
gi|260555292|ref|ZP_05827513.1| GTPase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|384142928|ref|YP_005525638.1| putative GTP-binding protein [Acinetobacter baumannii MDR-ZJ06]
gi|169149157|emb|CAM87036.1| putative GTP-binding protein [Acinetobacter baumannii AYE]
gi|260411834|gb|EEX05131.1| GTPase [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|347593421|gb|AEP06142.1| putative GTP-binding protein [Acinetobacter baumannii MDR-ZJ06]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/374 (54%), Positives = 265/374 (70%), Gaps = 12/374 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VNPQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLL 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 176 DEGKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEE 232
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 233 NAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQE 292
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y
Sbjct: 293 VRAWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTY 352
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GDVM FRFNV
Sbjct: 353 VVQDGDVMHFRFNV 366
>gi|341615439|ref|ZP_08702308.1| GTP-binding protein YchF [Citromicrobium sp. JLT1363]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 267/371 (71%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG V+VPD RL L+ +SK
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETQAAQAANYPFCTIEPNVGQVSVPDERLEKLAAISK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HVN KV
Sbjct: 61 SAKIIPTQLAFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDIQHVNNKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK-KGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D +V+ EL+ +DL+ +EKR+E K + D ++K A + L + + L DGK
Sbjct: 121 DPIADAEVVETELMLADLESVEKRVENAKRRATGGDKEAK---ALASVLGQALEFLKDGK 177
Query: 234 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR V D E + +Q LLT KP++YV NVAE D A+ N V A +
Sbjct: 178 PARLVEPGDDEEARLFEQAQLLTAKPVLYVCNVAEEDAAE--GNALSKLVAEKAEAEGAQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V +SA +EAEL E+ +R EYLA LG++ESGL +IR+ Y LLGL+T+FT G KE +A
Sbjct: 236 SVVVSAAIEAELVEMEEADRAEYLAELGLTESGLSKIIRAGYKLLGLQTFFTVGPKEARA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT AG APQAAG IH+DFE+GFIRAET+AYDD++A G A A++ G LR EGK+Y+VQ
Sbjct: 296 WTFPAGAKAPQAAGEIHTDFERGFIRAETIAYDDYIALGGEAGAKDAGKLRQEGKEYLVQ 355
Query: 413 EGDVMLFRFNV 423
+GDV++F+FNV
Sbjct: 356 DGDVLMFKFNV 366
>gi|253700100|ref|YP_003021289.1| GTP-dependent nucleic acid-binding protein EngD [Geobacter sp. M21]
gi|251774950|gb|ACT17531.1| GTP-binding protein YchF [Geobacter sp. M21]
Length = 364
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 268/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIVAVPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVAVPDPRMDRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCF++ ++VHV+G V
Sbjct: 60 PERMQPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFDNENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D++VI EL +DLD +EKR+++ +K +A+ K K+ L K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLQRTEK-QARSGDKKAKEDVDFCL-KVKSTLEKGLS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G V
Sbjct: 178 PRDLAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I +EAE++EL EE+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AWT
Sbjct: 236 FICGSIEAEISELEGEEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIHSDFEKGFIRAE +AY D++A+G A A+EKGL+R EGK+Y+VQ+G
Sbjct: 296 ITRGTKAPGAAGVIHSDFEKGFIRAEVIAYQDYIASGGEAGAKEKGLMRLEGKEYVVQDG 355
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 356 DVMHFRFNV 364
>gi|260888784|ref|ZP_05900047.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|330839824|ref|YP_004414404.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|260861537|gb|EEX76037.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
gi|329747588|gb|AEC00945.1| GTP-binding protein YchF [Selenomonas sputigena ATCC 35185]
Length = 368
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 266/369 (72%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + +S
Sbjct: 3 NLDVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLHEMYQS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLV GAS+GEGLGNKFL HIR+VD+I VVRCFED +I HV +D
Sbjct: 62 KKTTPASVRFVDIAGLVAGASKGEGLGNKFLEHIRQVDAIAHVVRCFEDTNITHVAATID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D++ I EL +DL+ +EKR+ KL K S SK AE L +I+ L +GK A
Sbjct: 122 PVRDIETILTELCLADLEVLEKRIMKL--AKLAKSGSKEAKAEDEVLRRIKACLEEGKSA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
RS+ L + E I+++ LT+KP++YVANVAE + A G+ N HV V + A+ S V
Sbjct: 180 RSLDLTEDELSLIREMNFLTLKPMLYVANVAEDEAAKDGAGNAHVAAVRDYAAKEGSEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA+VE+E+ EL +E+ +L LG++ESGL LI++ + LLGL T+ T+G E +AWT
Sbjct: 240 VVSARVESEIAELDAEDAKSFLEELGLTESGLDRLIKAAFELLGLLTFLTAGPDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IHSD E+GFIRAE V YDD VAAGS AAAREKG +R EGKDY++Q+G
Sbjct: 300 IVRGTTAPKAAGKIHSDIERGFIRAEIVNYDDLVAAGSTAAAREKGQVRLEGKDYVMQDG 359
Query: 415 DVMLFRFNV 423
DV FRFNV
Sbjct: 360 DVTYFRFNV 368
>gi|365155937|ref|ZP_09352279.1| GTP-dependent nucleic acid-binding protein engD [Bacillus smithii
7_3_47FAA]
gi|363627862|gb|EHL78706.1| GTP-dependent nucleic acid-binding protein engD [Bacillus smithii
7_3_47FAA]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/370 (55%), Positives = 269/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V VPD RL+ L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIDPNVGMVEVPDQRLNRLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I VVRCF D +I HV GKV
Sbjct: 60 PKKIVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVVRCFADENITHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL+ +DL+ +EKR+ K++K K KD + AE L K+++A K
Sbjct: 120 DPIVDIETINLELILADLETVEKRIGKVEKIAKQKDKAAM---AEFEVLSKLKEAFEAEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V + + +K LLTMKP++YVANV E D AD +N +V +V A +
Sbjct: 177 PARTVEFTEEQEKLVKGFQLLTMKPVLYVANVGEDDAADASNNQYVQQVREFAEKDNAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIR+ Y LLGL TYFT+GE E +AW
Sbjct: 237 IVVCAKIEEEIAELEDEEKAMFLQELGIEESGLDQLIRAAYHLLGLATYFTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM AP+ AG+IHSDFE+GFIRAE V+Y+D + AGS+ ARE G +R EGKDY+VQ+
Sbjct: 297 TFKKGMKAPECAGIIHSDFERGFIRAEVVSYEDLIEAGSMVGAREAGKVRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVIHFRFNV 366
>gi|169633723|ref|YP_001707459.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii SDF]
gi|169152515|emb|CAP01489.1| putative GTP-binding protein [Acinetobacter baumannii]
Length = 366
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/374 (54%), Positives = 265/374 (70%), Gaps = 12/374 (3%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+ M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 2 VFMGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAI 60
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNG
Sbjct: 61 VNPQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNG 120
Query: 173 KVDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
K+DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L
Sbjct: 121 KIDPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLL 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
+GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++
Sbjct: 176 DEGKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEE 232
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E
Sbjct: 233 NAIVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQE 292
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y
Sbjct: 293 VRAWTLKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTY 352
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GDVM FRFNV
Sbjct: 353 VVQDGDVMHFRFNV 366
>gi|184157841|ref|YP_001846180.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii ACICU]
gi|213157036|ref|YP_002319081.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB0057]
gi|215483685|ref|YP_002325906.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii AB307-0294]
gi|239504034|ref|ZP_04663344.1| translation-associated GTPase [Acinetobacter baumannii AB900]
gi|301346799|ref|ZP_07227540.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB056]
gi|301511723|ref|ZP_07236960.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB058]
gi|301596979|ref|ZP_07241987.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB059]
gi|332855472|ref|ZP_08435892.1| GTP-binding protein YchF [Acinetobacter baumannii 6013150]
gi|332866631|ref|ZP_08437118.1| GTP-binding protein YchF [Acinetobacter baumannii 6013113]
gi|332872482|ref|ZP_08440452.1| GTP-binding protein YchF [Acinetobacter baumannii 6014059]
gi|384131936|ref|YP_005514548.1| Putative GTP-binding protein [Acinetobacter baumannii 1656-2]
gi|385237232|ref|YP_005798571.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii TCDC-AB0715]
gi|387124201|ref|YP_006290083.1| GTP-binding protein YchF [Acinetobacter baumannii MDR-TJ]
gi|403677138|ref|ZP_10938944.1| GTP-binding protein YchF [Acinetobacter sp. NCTC 10304]
gi|407932550|ref|YP_006848193.1| GTP-binding protein YchF [Acinetobacter baumannii TYTH-1]
gi|416145965|ref|ZP_11600815.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB210]
gi|417547115|ref|ZP_12198201.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC032]
gi|417547745|ref|ZP_12198827.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-18]
gi|417553186|ref|ZP_12204256.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-81]
gi|417561522|ref|ZP_12212401.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC137]
gi|417563693|ref|ZP_12214567.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC143]
gi|417568098|ref|ZP_12218961.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC189]
gi|417573813|ref|ZP_12224667.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC-5]
gi|417578774|ref|ZP_12229607.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-17]
gi|417869761|ref|ZP_12514741.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH1]
gi|417873223|ref|ZP_12518099.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH2]
gi|417878635|ref|ZP_12523244.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH3]
gi|417883249|ref|ZP_12527503.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH4]
gi|421197872|ref|ZP_15655041.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC109]
gi|421204537|ref|ZP_15661658.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC12]
gi|421456205|ref|ZP_15905548.1| GTP-binding protein YchF [Acinetobacter baumannii IS-123]
gi|421536429|ref|ZP_15982675.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC30]
gi|421622055|ref|ZP_16062965.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC074]
gi|421624774|ref|ZP_16065638.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC098]
gi|421629437|ref|ZP_16070169.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC180]
gi|421632797|ref|ZP_16073442.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-13]
gi|421644923|ref|ZP_16085397.1| GTP-binding protein YchF [Acinetobacter baumannii IS-235]
gi|421648479|ref|ZP_16088882.1| GTP-binding protein YchF [Acinetobacter baumannii IS-251]
gi|421652988|ref|ZP_16093336.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC0162]
gi|421653438|ref|ZP_16093771.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-72]
gi|421657123|ref|ZP_16097398.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-83]
gi|421661764|ref|ZP_16101934.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC110]
gi|421668835|ref|ZP_16108868.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC087]
gi|421669988|ref|ZP_16109999.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC099]
gi|421676555|ref|ZP_16116462.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC065]
gi|421678646|ref|ZP_16118530.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC111]
gi|421687611|ref|ZP_16127332.1| GTP-binding protein YchF [Acinetobacter baumannii IS-143]
gi|421691054|ref|ZP_16130718.1| GTP-binding protein YchF [Acinetobacter baumannii IS-116]
gi|421697035|ref|ZP_16136614.1| GTP-binding protein YchF [Acinetobacter baumannii WC-692]
gi|421699521|ref|ZP_16139045.1| GTP-binding protein YchF [Acinetobacter baumannii IS-58]
gi|421703366|ref|ZP_16142830.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1122]
gi|421707089|ref|ZP_16146489.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1219]
gi|421788213|ref|ZP_16224522.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-82]
gi|421791155|ref|ZP_16227339.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-2]
gi|421798424|ref|ZP_16234446.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-21]
gi|421798584|ref|ZP_16234601.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC1]
gi|421804930|ref|ZP_16240826.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-694]
gi|421809204|ref|ZP_16245044.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC035]
gi|424052635|ref|ZP_17790167.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab11111]
gi|424060168|ref|ZP_17797659.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab33333]
gi|424064115|ref|ZP_17801600.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab44444]
gi|425748905|ref|ZP_18866887.1| GTP-binding protein YchF [Acinetobacter baumannii WC-348]
gi|425751752|ref|ZP_18869694.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-113]
gi|445406667|ref|ZP_21431944.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-57]
gi|445445763|ref|ZP_21443204.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-92]
gi|445458869|ref|ZP_21447409.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC047]
gi|445469493|ref|ZP_21451150.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC338]
gi|445475563|ref|ZP_21453453.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-78]
gi|445488674|ref|ZP_21458283.1| GTP-binding protein YchF [Acinetobacter baumannii AA-014]
gi|183209435|gb|ACC56833.1| predicted GTPase, probable translation factor [Acinetobacter
baumannii ACICU]
gi|193077132|gb|ABO11909.2| putative GTP-binding protein [Acinetobacter baumannii ATCC 17978]
gi|213056196|gb|ACJ41098.1| GTP-binding protein YchF [Acinetobacter baumannii AB0057]
gi|213987424|gb|ACJ57723.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii AB307-0294]
gi|322508156|gb|ADX03610.1| Putative GTP-binding protein [Acinetobacter baumannii 1656-2]
gi|323517730|gb|ADX92111.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii TCDC-AB0715]
gi|332727446|gb|EGJ58876.1| GTP-binding protein YchF [Acinetobacter baumannii 6013150]
gi|332734505|gb|EGJ65618.1| GTP-binding protein YchF [Acinetobacter baumannii 6013113]
gi|332739288|gb|EGJ70145.1| GTP-binding protein YchF [Acinetobacter baumannii 6014059]
gi|333366524|gb|EGK48538.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AB210]
gi|342229633|gb|EGT94492.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH1]
gi|342231930|gb|EGT96722.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH2]
gi|342232279|gb|EGT97059.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH3]
gi|342236146|gb|EGU00688.1| GTP-binding protein YchF [Acinetobacter baumannii ABNIH4]
gi|385878693|gb|AFI95788.1| GTP-binding protein YchF [Acinetobacter baumannii MDR-TJ]
gi|395524104|gb|EJG12193.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC137]
gi|395554393|gb|EJG20395.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC189]
gi|395555449|gb|EJG21450.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC143]
gi|395566378|gb|EJG28021.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC109]
gi|395567912|gb|EJG28586.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-17]
gi|398325940|gb|EJN42097.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC12]
gi|400209381|gb|EJO40351.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC-5]
gi|400211303|gb|EJO42266.1| GTP-binding protein YchF [Acinetobacter baumannii IS-123]
gi|400385003|gb|EJP43681.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC032]
gi|400389494|gb|EJP52565.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-18]
gi|400393445|gb|EJP60491.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-81]
gi|404560768|gb|EKA66010.1| GTP-binding protein YchF [Acinetobacter baumannii WC-692]
gi|404563205|gb|EKA68415.1| GTP-binding protein YchF [Acinetobacter baumannii IS-116]
gi|404564411|gb|EKA69591.1| GTP-binding protein YchF [Acinetobacter baumannii IS-143]
gi|404571222|gb|EKA76282.1| GTP-binding protein YchF [Acinetobacter baumannii IS-58]
gi|404668120|gb|EKB36029.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab33333]
gi|404671192|gb|EKB39048.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab11111]
gi|404673496|gb|EKB41282.1| GTP-dependent nucleic acid-binding protein engD [Acinetobacter
baumannii Ab44444]
gi|407192377|gb|EKE63557.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1122]
gi|407192778|gb|EKE63953.1| GTP-binding protein YchF [Acinetobacter baumannii ZWS1219]
gi|407901131|gb|AFU37962.1| GTP-binding protein YchF [Acinetobacter baumannii TYTH-1]
gi|408503937|gb|EKK05689.1| GTP-binding protein YchF [Acinetobacter baumannii IS-235]
gi|408504405|gb|EKK06156.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC0162]
gi|408512791|gb|EKK14429.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-72]
gi|408515313|gb|EKK16901.1| GTP-binding protein YchF [Acinetobacter baumannii IS-251]
gi|408696569|gb|EKL42102.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC074]
gi|408700468|gb|EKL45919.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC098]
gi|408701423|gb|EKL46852.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC180]
gi|408707905|gb|EKL53184.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-13]
gi|408714265|gb|EKL59417.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-83]
gi|408715256|gb|EKL60384.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC110]
gi|409985680|gb|EKO41887.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter
baumannii AC30]
gi|410378969|gb|EKP31578.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC087]
gi|410379622|gb|EKP32225.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC065]
gi|410386950|gb|EKP39412.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC099]
gi|410392209|gb|EKP44571.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC111]
gi|410394288|gb|EKP46624.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-21]
gi|410403651|gb|EKP55734.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-2]
gi|410403655|gb|EKP55737.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-82]
gi|410410315|gb|EKP62229.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-694]
gi|410412575|gb|EKP64432.1| GTP-binding protein YchF [Acinetobacter baumannii Canada BC1]
gi|410414988|gb|EKP66780.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC035]
gi|425489886|gb|EKU56187.1| GTP-binding protein YchF [Acinetobacter baumannii WC-348]
gi|425499759|gb|EKU65790.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-113]
gi|444760958|gb|ELW85386.1| GTP-binding protein YchF [Acinetobacter baumannii WC-A-92]
gi|444767510|gb|ELW91757.1| GTP-binding protein YchF [Acinetobacter baumannii AA-014]
gi|444774155|gb|ELW98243.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC338]
gi|444775278|gb|ELW99348.1| GTP-binding protein YchF [Acinetobacter baumannii OIFC047]
gi|444778902|gb|ELX02902.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-78]
gi|444781314|gb|ELX05233.1| GTP-binding protein YchF [Acinetobacter baumannii Naval-57]
gi|452953474|gb|EME58893.1| GTP-binding protein YchF [Acinetobacter baumannii MSP4-16]
Length = 363
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 264/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN EL +DL+ + K R+ K+ KG K++ A KA LEKIQ L +
Sbjct: 120 DPLDDIATINTELALADLETVAKAILRLTKVAKGGDKEAV-----ATKAVLEKIQPLLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR+ L+D ER I+ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 175 GKPARAADLSDDERKLIRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +
Sbjct: 232 IVVPLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIH+DFEKGFIRAE VAYDDFV A+E G R EGK Y+V
Sbjct: 292 AWTVKVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFVQYNGENGAKEAGKWRLEGKTYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM FRFNV
Sbjct: 352 QDGDVMHFRFNV 363
>gi|259415679|ref|ZP_05739600.1| GTP-binding protein YchF [Silicibacter sp. TrichCH4B]
gi|259348909|gb|EEW60671.1| GTP-binding protein YchF [Silicibacter sp. TrichCH4B]
Length = 365
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ +++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLEKLAEIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D D I EL+ +DL+ IEKR L +K K D +++ +D L + Q L DGK
Sbjct: 121 DPVADADTIETELMLADLESIEKRRANLVRKLKGNDKEAQQQD---RLLAEAQAMLEDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++ ++ + L LLT KP++YV NV ES+ + N H +V +A+ +
Sbjct: 178 PARLVEVDAEDQKAWTMLQLLTTKPVLYVCNVGESESVE--GNAHSTKVAEMAAAQGNAH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISAQ+E E+++L EE +L +G++E+GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAQIEEEISQLEPEEAQMFLDEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR+G APQAAGVIH DFEKGFIRAET+AYDD+VA G A A+E G +R+EGK YIV++
Sbjct: 296 TIRSGTAAPQAAGVIHGDFEKGFIRAETIAYDDYVACGGEAGAKEAGKMRAEGKGYIVKD 355
Query: 414 GDVMLFRFN 422
GDVM F FN
Sbjct: 356 GDVMHFLFN 364
>gi|418974276|ref|ZP_13522189.1| GTP-binding protein YchF [Streptococcus oralis SK1074]
gi|383349316|gb|EID27260.1| GTP-binding protein YchF [Streptococcus oralis SK1074]
Length = 371
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|163858314|ref|YP_001632612.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella petrii
DSM 12804]
gi|163262042|emb|CAP44344.1| putative GTP binding protein [Bordetella petrii]
Length = 363
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 203/371 (54%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLQKLAEIVG 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE D+I+ VVRCFED +++HV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETDAIVNVVRCFEDPNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL EK + + +K ++S K+A++ AALEK AL
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKEAQRLVAALEKCIAALNQA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RSV L+D E IKQLC +T KP +YV NV++ + NP + + A+ +
Sbjct: 176 KPVRSVDLSDEEAALIKQLCFITAKPAMYVGNVSDDGFTN---NPLLERLTEFAAARNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ +LP E+R +LA +G+ E GL LIR+ + LLGL+TYFT+G KE +A
Sbjct: 233 VVAICAAIESEIVDLPDEDRQAFLADMGMDEPGLNRLIRAAFKLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+++DDF+A A+E G +R+EGK+Y+VQ
Sbjct: 293 WTIPIGATAPQAAGVIHTDFERGFIRAQTISFDDFIACKGEQGAKEAGKMRAEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|294794935|ref|ZP_06760070.1| GTP-binding protein YchF [Veillonella sp. 3_1_44]
gi|294454297|gb|EFG22671.1| GTP-binding protein YchF [Veillonella sp. 3_1_44]
Length = 368
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 278/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ L + E + IK+L LLT KP +YVAN++E +++D SN +V V A + +
Sbjct: 177 AKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSSNEYVKRVEEYAKNEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 237 GIVVVSARIESEIAELSDEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDY++
Sbjct: 297 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|402834090|ref|ZP_10882695.1| GTP-binding protein YchF [Selenomonas sp. CM52]
gi|402278920|gb|EJU27970.1| GTP-binding protein YchF [Selenomonas sp. CM52]
Length = 368
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/369 (56%), Positives = 266/369 (72%), Gaps = 4/369 (1%)
Query: 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115
+L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL + +S
Sbjct: 3 NLDVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDARLAVLHEMYQS 61
Query: 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVD 175
+K PASV FVDIAGLV GAS+GEGLGNKFL HIR+VD+I VVRCFED +I HV +D
Sbjct: 62 KKTTPASVRFVDIAGLVAGASKGEGLGNKFLEHIRQVDAIAHVVRCFEDTNITHVAATID 121
Query: 176 PKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
P D++ I EL +DL+ +EKR+ KL K S SK AE L +I+ L +GK A
Sbjct: 122 PVRDIETILTELCLADLEVLEKRIMKL--AKLAKSGSKEAKAEDEVLRRIKACLEEGKSA 179
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
RS+ L + E I+++ LT+KP++YVANVAE + A G+ N HV V + A+ S V
Sbjct: 180 RSLDLTEDELSLIREMNFLTLKPMLYVANVAEDEAAKDGAGNAHVAAVRDYAAKEGSEVV 239
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA+VE+E+ EL +E+ +L LG++ESGL LI++ + LLGL T+ T+G E +AWT
Sbjct: 240 VVSARVESEIAELDAEDAKAFLEELGLTESGLDRLIKAAFELLGLLTFLTAGPDECRAWT 299
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AAG IHSD E+GFIRAE V YDD VAAGS AAAREKG +R EGKDY++Q+G
Sbjct: 300 IVRGTTAPKAAGKIHSDIERGFIRAEIVNYDDLVAAGSTAAAREKGQVRLEGKDYVMQDG 359
Query: 415 DVMLFRFNV 423
DV FRFNV
Sbjct: 360 DVTYFRFNV 368
>gi|357636677|ref|ZP_09134552.1| GTP-binding protein YchF [Streptococcus macacae NCTC 11558]
gi|357585131|gb|EHJ52334.1| GTP-binding protein YchF [Streptococcus macacae NCTC 11558]
Length = 371
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
+DP +D++ INLEL+ SDL+ I KR +++K A+ + K AE LEKI+ L
Sbjct: 120 SKFIDPIADIETINLELILSDLESINKRYARVEK-IARTQKDKDSIAEFKVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTIEFTKDEKKIVKGLFLLTTKPVLYVANVDEDKVADPDSIAYVQQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ ++L +G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKTDFLEVMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A RE G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVREAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|210617177|ref|ZP_03291444.1| hypothetical protein CLONEX_03666 [Clostridium nexile DSM 1787]
gi|210149452|gb|EEA80461.1| hypothetical protein CLONEX_03666 [Clostridium nexile DSM 1787]
Length = 365
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 279/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KIVPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K K A++ ++ K+ E LE+I+ L + K AR
Sbjct: 120 IRDIETINLELIFSDIEMLERRIAKAVK-VARNDKAVAKELE--LLERIKAHLEENKMAR 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
S T+ND + + ++ LLT KP+I+ ANV E DLA+ G+ N V V A
Sbjct: 177 SFTVNDEDEQALLESYNLLTYKPVIFAANVTEDDLANDGADNDGVQAVKEYAEKEGCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++YSLLGL +Y T+GE+E +AWT
Sbjct: 237 VVCAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYSLLGLISYLTAGEQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V+YDD + G+ AA+EKGL+R EGK+Y+VQ+G
Sbjct: 297 IKKGTKAPQAAGKIHSDFERGFIRAEIVSYDDLMDCGTYTAAKEKGLVRLEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
D++LFRFNV
Sbjct: 357 DIILFRFNV 365
>gi|425746704|ref|ZP_18864728.1| GTP-binding protein YchF [Acinetobacter baumannii WC-323]
gi|425485343|gb|EKU51737.1| GTP-binding protein YchF [Acinetobacter baumannii WC-323]
Length = 363
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 262/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL--ATKAVLEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ + V
Sbjct: 178 ARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVQKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++ + E GL +IR+ Y LLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEAMDMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGK YIVQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQFNGENGAKEAGKWRLEGKTYIVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|71730263|gb|EAO32348.1| Conserved hypothetical protein 92 [Xylella fastidiosa Ann-1]
Length = 363
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D+++I+ EL+ +DLD +EK R+ + KG K++ ++ K+ LE++Q AL +
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGKEAIAR-----KSVLERLQVALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + AS +
Sbjct: 175 GKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRASSDNA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE +
Sbjct: 232 QLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G +R EGK+Y V
Sbjct: 292 AWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAGRMRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|359430509|ref|ZP_09221516.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
NBRC 100985]
gi|358234052|dbj|GAB03055.1| GTP-dependent nucleic acid-binding protein EngD [Acinetobacter sp.
NBRC 100985]
Length = 363
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 262/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDSRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DLD + K + +L K + L A KA LEKIQ L +GKP
Sbjct: 120 DPLDDIATINTELALADLDTVAKALLRLTKAAKGGDKEAL--ATKAVLEKIQPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER +++ L+T+KP +Y+ANVAE + NPH+ V LA++ + V
Sbjct: 178 ARAADLSDDERKAVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVQKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L ++G+ E GL +IR+ Y LLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEAMGMEEPGLNVVIRAGYKLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGK YIVQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECVAYDDFIQYNGENGAKEAGKWRLEGKTYIVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|153809805|ref|ZP_01962473.1| hypothetical protein RUMOBE_00186 [Ruminococcus obeum ATCC 29174]
gi|149833983|gb|EDM89063.1| GTP-binding protein YchF [Ruminococcus obeum ATCC 29174]
Length = 371
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L S+
Sbjct: 7 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLLGDFYHSK 65
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 66 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSIDP 125
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K+ K D ++ E L+++++ L DG A
Sbjct: 126 LRDIETINLELIFSDIEILERRIAKVTKTARMDKEAA---KELDFLQRVKKHLEDGNMAI 182
Query: 237 SVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ L N+ E + LLT KP+IY ANV+E DLAD G SN HV V A++ +S
Sbjct: 183 TMELENEDEEAWMGTYNLLTWKPVIYAANVSEDDLADDGESNAHVQAVRKYAAEQKSEVF 242
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E++EL +E+ +L LG+ ESGL L+R++Y LLGL ++ TSGE ET+AWT
Sbjct: 243 VICAEIEEEISELDDDEKKMFLEDLGLKESGLEKLVRASYRLLGLMSFLTSGEDETRAWT 302
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGL+R EGK+YIVQ+G
Sbjct: 303 IKIGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLVRMEGKEYIVQDG 362
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 363 DVILFRFNV 371
>gi|294793025|ref|ZP_06758171.1| GTP-binding protein YchF [Veillonella sp. 6_1_27]
gi|294455970|gb|EFG24334.1| GTP-binding protein YchF [Veillonella sp. 6_1_27]
Length = 368
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 278/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ L + E + IK+L LLT KP +YVAN++E +++D SN +V V A + +
Sbjct: 177 AKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSSNEYVKRVEEYAKNEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 237 GIVVVSARIESEIAELSEEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDY++
Sbjct: 297 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|381400268|ref|ZP_09925245.1| GTP-binding protein YchF [Kingella kingae PYKK081]
gi|380834750|gb|EIC14578.1| GTP-binding protein YchF [Kingella kingae PYKK081]
Length = 363
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + L++GK ++S KDA+K A LEK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--LREGKR--AKSGDKDAQKLVAILEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R+ L+ E IK L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 176 KPVRAFGLDKEEMALIKPLFLLTAKPAMYVGNVAEDGFEN---NPHLARLQELAARENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL E+VE+LA +G++E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAALESEIAELNDAEKVEFLAEMGLAEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G +R+EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAGKMRAEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVIHFLFNV 363
>gi|329116224|ref|ZP_08244941.1| GTP-binding protein YchF [Streptococcus parauberis NCFD 2020]
gi|333904254|ref|YP_004478125.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parauberis KCTC 11537]
gi|326906629|gb|EGE53543.1| GTP-binding protein YchF [Streptococcus parauberis NCFD 2020]
gi|333119519|gb|AEF24453.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parauberis KCTC 11537]
gi|456369929|gb|EMF48829.1| GTP-binding and nucleic acid-binding protein [Streptococcus
parauberis KRS-02109]
gi|457093934|gb|EMG24489.1| GTP-binding and nucleic acid-binding protein [Streptococcus
parauberis KRS-02083]
Length = 371
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLDKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DLD I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLDSINKRYARVEK-MARTQKDKESLAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ N+ E +K L LLT KP++YVANV E+ +ADP +V ++ A
Sbjct: 179 DGKSARTIEFNEEEAKVVKGLFLLTTKPVLYVANVDENRVADPDDIDYVKQIREFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD +A GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMAYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|340029839|ref|ZP_08665902.1| GTP-binding protein YchF [Paracoccus sp. TRP]
Length = 365
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 266/373 (71%), Gaps = 14/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPDPRL L+ ++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDPRLDKLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED+D+ HV G+V
Sbjct: 61 SKQIIPTRITFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDDDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKD--SQSKLKDAEKAALEKIQQAL 229
DP +D D I EL+ +DL+ +E+R+ ++ KG KD +Q KL A +AALE
Sbjct: 121 DPLADADTIETELMIADLESVERRLANIQRKLKGGDKDAVAQEKLLKAAQAALES----- 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKPAR+V + D +R + L LLT KP+++V NV E D A G N + V +A++
Sbjct: 176 --GKPARTVQVADEDRKAWDMLQLLTAKPVLFVCNV-EEDKAATG-NSQSDRVAQMAAEQ 231
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+G V ISA++E E+++LP+EE +L +G+ E+GL LIR Y LLGL TYFT G KE
Sbjct: 232 GAGHVVISARIEEEISQLPAEEATMFLEEMGLHEAGLDRLIREGYKLLGLETYFTIGPKE 291
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI G AP+AAGVIH DFE+GFIRAET+AY+D+V A ARE G LR EGK Y
Sbjct: 292 ARAWTIHKGTPAPRAAGVIHGDFERGFIRAETIAYEDYVTYKGEAGAREAGKLRVEGKSY 351
Query: 410 IVQEGDVMLFRFN 422
+VQ+GDV+ F FN
Sbjct: 352 VVQDGDVLHFLFN 364
>gi|422937464|ref|ZP_16966756.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|339890929|gb|EGQ79982.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 364
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/367 (55%), Positives = 270/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPN+G+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNIGMVTVPDERLNELAKIVNPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRSTSAICQVVRCFEDDNVIHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V V A + S V +
Sbjct: 180 TLNLADDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVELVKEFAKGIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDEESKKEFLEALGVKEPGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDEFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|71275256|ref|ZP_00651543.1| Conserved hypothetical protein 92 [Xylella fastidiosa Dixon]
gi|170731254|ref|YP_001776687.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
M12]
gi|71164065|gb|EAO13780.1| Conserved hypothetical protein 92 [Xylella fastidiosa Dixon]
gi|71728033|gb|EAO30244.1| Conserved hypothetical protein 92 [Xylella fastidiosa Ann-1]
gi|167966047|gb|ACA13057.1| GTP-binding protein [Xylella fastidiosa M12]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 274/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTAIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D+++I+ EL+ +DLD +EK R+ + KG K++ ++ K+ LE++Q AL +
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGKEAIAR-----KSVLERLQVALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + A+ +
Sbjct: 175 GKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLETLRVRAASDNA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE +
Sbjct: 232 QLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G +R EGK+Y V
Sbjct: 292 AWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAGRMRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|381195902|ref|ZP_09903244.1| GTP-binding protein YchF [Acinetobacter lwoffii WJ10621]
Length = 363
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 263/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DL+ + K + +L K + L A KA L+KI L +GKP
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAL--ATKAVLDKILPLLDEGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ + V
Sbjct: 178 ARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L +LG+ E GL +IR+ Y LLGL+TYFT+G +E +AWT
Sbjct: 235 PLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYGLLGLQTYFTAGVQEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G R EGK YIVQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAECVAYNDFVQYNGEAGAKEAGKWRLEGKTYIVQDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVLHFRFNV 363
>gi|392427863|ref|YP_006468857.1| GTP-binding protein YchF [Desulfosporosinus acidiphilus SJ4]
gi|391357826|gb|AFM43525.1| GTP-binding protein YchF [Desulfosporosinus acidiphilus SJ4]
Length = 366
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/373 (57%), Positives = 274/373 (73%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PFCTI+PNVG+V VPD RL L+ +
Sbjct: 1 MTLHAGIVGLPNVGKSTLFNAITQAG-AEAANYPFCTIDPNVGMVEVPDLRLQKLADMVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VPA+VEFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCFED ++VHV G +
Sbjct: 60 PKKIVPATVEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFEDPNVVHVEGSI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK----LKKGKAKDSQSKLKDAEKAALEKIQQALM 230
DPK D++ I+LEL+ +D++ IE+R E+ LK G K AE L +++
Sbjct: 120 DPKRDIETIDLELILADMESIERRSERTNKLLKMGDKKAG------AEAELLNRLKDTFN 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
GK AR++T +D ER+ +K LLT+KPI+YVANV E LA NP+V +V +A+
Sbjct: 174 QGKGARALTFSDEEREILKGFSLLTLKPIVYVANVREDGLATAEDNPYVQQVRAIAAAEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V + AQ+EAE+ EL +EE+ +L LG+ ESGL LIR ++ LLGL T+FTSG E
Sbjct: 234 AEVVVVCAQIEAEIAELEAEEKEVFLQDLGLEESGLDQLIRVSFHLLGLMTFFTSGPMEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
KAWTI G APQAAGVIH+DFE+GFIRAE V+Y+DFV L AR+KGL+R EGKDYI
Sbjct: 294 KAWTIYQGTKAPQAAGVIHTDFERGFIRAEVVSYEDFVENDGLNGARDKGLVRLEGKDYI 353
Query: 411 VQEGDVMLFRFNV 423
++ GD++ FRFNV
Sbjct: 354 MRNGDIVHFRFNV 366
>gi|225389948|ref|ZP_03759672.1| hypothetical protein CLOSTASPAR_03698 [Clostridium asparagiforme
DSM 15981]
gi|225043987|gb|EEG54233.1| hypothetical protein CLOSTASPAR_03698 [Clostridium asparagiforme
DSM 15981]
Length = 365
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 280/370 (75%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDARLDKLTAMYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K KG A +++ K E + L+ I+ L DGK AR
Sbjct: 120 LRDIETINLELIFSDIEILERRISKQSKG-AFNNKDLAK--EVSLLKAIKAHLEDGKLAR 176
Query: 237 SVTLNDFERDS--IKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSGR 293
S T +D E D+ I L LLT KP+I+ ANVAESDLAD +N +VN V AS+
Sbjct: 177 SFTPDD-EDDNEFIASLNLLTGKPVIFAANVAESDLADDAANNQYVNAVREFASENGCEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I A++E E+ EL +E+ +L LG++ESGL LI ++Y LLGL +Y T+G +E++AW
Sbjct: 236 FVICAEIEQEIAELDEDEKKMFLEDLGITESGLEKLIAASYRLLGLISYLTAGPQESRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFE+GFIRAE VAYDD ++ G + AA+EKGL+RSEGK+Y++++
Sbjct: 296 TIKVGTKAPQAAGKIHSDFERGFIRAEVVAYDDLMSCGGMTAAKEKGLVRSEGKEYVMKD 355
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 356 GDVVLFRFNV 365
>gi|291522691|emb|CBK80984.1| GTP-binding protein YchF [Coprococcus catus GD/7]
Length = 366
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 275/373 (73%), Gaps = 13/373 (3%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIVAVPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVAVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++I+HV+G VDP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDDNIIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQA---LMDGK 233
D++ INLEL+FSD++ +E+R+ K+ K Q+K+ A LE Q L DGK
Sbjct: 120 ARDIETINLELIFSDIEILERRIAKIAK------QAKMDKAYAKELELTQAVKAHLEDGK 173
Query: 234 PARSVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQ 290
AR+ ++D E + I K LLT KP IY ANVAE DLAD G SNPHV +V +A +
Sbjct: 174 MARTFEVSDDEDEQIWFKNYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ I AQ+E EL +L +E+ EYL LGVS SGL L+ ++YSLLGL ++ T+GE E
Sbjct: 234 AEVFVICAQIEQELADLDDDEKKEYLEDLGVSSSGLDKLVAASYSLLGLISFLTAGEDEC 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AA+EKG++ EGK+Y+
Sbjct: 294 RAWTIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAKEKGIVGMEGKEYV 353
Query: 411 VQEGDVMLFRFNV 423
V++GDV+LFRFNV
Sbjct: 354 VKDGDVILFRFNV 366
>gi|115373528|ref|ZP_01460825.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|310825288|ref|YP_003957646.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|115369534|gb|EAU68472.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
gi|309398360|gb|ADO75819.1| GTP-binding protein YchF [Stigmatella aurantiaca DW4/3-1]
Length = 369
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/374 (54%), Positives = 271/374 (72%), Gaps = 10/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ G AQAAN+PFCTIEPNVG+V VPD RL LS L K
Sbjct: 1 MALSIGIVGLPNVGKSTLFNALSSAG-AQAANYPFCTIEPNVGVVPVPDERLDKLSALIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K +P S+EFVDIAGLV+GAS+GEGLGN+FL++IR+VD++L V+RCFED+++ HV G V
Sbjct: 60 PLKKIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRQVDAVLHVLRCFEDDNVTHVEGGV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-----GKAKDSQSKLKDAEKAALEKIQQAL 229
+P D DV+++EL DL+ +EKR E+ ++ GKA D AE A L++I+ L
Sbjct: 120 NPVRDRDVVDIELCLKDLETVEKRRERAQRNAKTGGKAGDEAK----AELALLDRIKAGL 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
R+ LN+ ER +I++L LLT KP++YVAN+ ES + + HV V +A+
Sbjct: 176 DASITVRAQKLNEDERAAIRELFLLTDKPVLYVANIGESQIGKEDDSVHVKAVREMAAKE 235
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+G V ++A +EAE+ +LP EER +L S G++E GL ++R+ Y LLGL+TYFT GE+E
Sbjct: 236 GAGVVVLAAAMEAEIQQLPEEERPGFLESAGLTEPGLHKVVRAGYKLLGLQTYFTVGEQE 295
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI G APQAAGVIHSDFE+GFI+AE + ++D + GS +A +EKGLLR EGK+Y
Sbjct: 296 CRAWTIHTGFKAPQAAGVIHSDFERGFIKAEVMRWEDLIKLGSESAVKEKGLLRVEGKEY 355
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GD M FRFNV
Sbjct: 356 VVQDGDCMHFRFNV 369
>gi|167759077|ref|ZP_02431204.1| hypothetical protein CLOSCI_01424 [Clostridium scindens ATCC 35704]
gi|336422094|ref|ZP_08602248.1| GTP-binding protein YchF [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663195|gb|EDS07325.1| GTP-binding protein YchF [Clostridium scindens ATCC 35704]
gi|336009384|gb|EGN39378.1| GTP-binding protein YchF [Lachnospiraceae bacterium 5_1_57FAA]
Length = 366
Score = 409 bits (1051), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 275/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G ++P
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDGNIVHVDGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L +G+ A+
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTTK-VARNDKTAAK--ELALLEKIKAHLEEGRLAK 176
Query: 237 SVTLNDFERD--SIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
+ + E + + LLT KP+IY ANVAE DLAD G+ N V V A QS
Sbjct: 177 TFEGAEDEEELAWLTGYNLLTYKPVIYAANVAEDDLADDGAGNVGVQAVREYAGKEQSEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AW
Sbjct: 237 FVVCAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYRLLGLISYLTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IH+DFE+GFIRAE VAYDD + GS AA+EKGL+R EGKDY+VQ+
Sbjct: 297 TITKGTKAPQAAGKIHTDFERGFIRAEVVAYDDLIECGSHNAAKEKGLIRLEGKDYVVQD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|254466908|ref|ZP_05080319.1| GTP-binding protein YchF [Rhodobacterales bacterium Y4I]
gi|206687816|gb|EDZ48298.1| GTP-binding protein YchF [Rhodobacterales bacterium Y4I]
Length = 365
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 264/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVAVPDARLDKLAEIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIRETDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D +VI EL+ +DL+ IEKR L +K K D +++ +D AA Q L DGK
Sbjct: 121 DPVADAEVIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAA---AQAMLEDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++ + + K L LLT KP++YV NV ES+ + N H +V +A+ +
Sbjct: 178 PARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVE--GNAHSAKVAEMAAAQGNSH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISAQ+E E+++L EE +L +G+SE+GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAQIEEEISQLDPEEAQMFLEEMGLSEAGLDRLIRAGYDLLHLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIH DFEKGFIRAET+AYDDFVA G A+E G +R+EGK YIV++
Sbjct: 296 TIRQGTAAPQAAGVIHGDFEKGFIRAETIAYDDFVAMGGEQGAKEAGKMRAEGKSYIVKD 355
Query: 414 GDVMLFRFN 422
GDV+ F FN
Sbjct: 356 GDVLHFLFN 364
>gi|163816699|ref|ZP_02208062.1| hypothetical protein COPEUT_02889 [Coprococcus eutactus ATCC 27759]
gi|158447956|gb|EDP24951.1| GTP-binding protein YchF [Coprococcus eutactus ATCC 27759]
Length = 365
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 275/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVGIVAVPD RL L+ + S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGIVAVPDERLDRLTEMYNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K +G D K+ E ++I+ L DGK A+
Sbjct: 120 IRDIETINLELIFSDIEVLDRRIAKTIRGARND---KMLAKELDFQQRIKAHLEDGKLAK 176
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ + D E+ I++ LLT KP+I+ ANV E D+AD G SN +V +V A D +
Sbjct: 177 TIEVTDEDEQAWIEEYNLLTWKPVIFAANVGEDDIADDGASNENVQKVKAYAKDFDAEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E EL EL EE+ +L LGV ESGL LI+++YSLLGL +Y T+GE E++AWT
Sbjct: 237 VVCAQIEQELAELDDEEKKMFLEDLGVKESGLDKLIKASYSLLGLISYLTAGETESRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSDFE+GFI+AE V+Y D + GS+ AA+EKGL+R EGK+Y+V++G
Sbjct: 297 IKKGTKAPGAAGKIHSDFERGFIKAEVVSYKDLMDCGSMLAAKEKGLVRQEGKEYVVEDG 356
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 357 DVILFKFNV 365
>gi|187734952|ref|YP_001877064.1| GTP-binding protein YchF [Akkermansia muciniphila ATCC BAA-835]
gi|187425004|gb|ACD04283.1| GTP-binding protein YchF [Akkermansia muciniphila ATCC BAA-835]
Length = 373
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/375 (55%), Positives = 276/375 (73%), Gaps = 11/375 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L+AGIVGLPNVGKSTLFNAV KAQAAN+PFCTI+PNVG+V VPDPRL VLS +S S+
Sbjct: 2 LQAGIVGLPNVGKSTLFNAVTRTRKAQAANYPFCTIDPNVGMVTVPDPRLQVLSDMSGSE 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P +EFVDIAGLVKGAS+G GLGN+FL++IREVD+I+QVVRCF+++DI+H G VDP
Sbjct: 62 KIIPTLIEFVDIAGLVKGASEGAGLGNQFLANIREVDAIVQVVRCFDNDDIIHELGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRM-EKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D+D+IN EL+ +D+ +EKR+ + +K ++ D ++K AE A + K+ L +G PA
Sbjct: 122 LRDIDIINSELILADIATMEKRLSSRERKARSGDKEAK---AEVALITKLLPHLNEGNPA 178
Query: 236 RSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD----PGSNPHVNEVMNLASDL 289
++ L+D ER + LL+ K I+ NV E +LAD P ++P+V++V ++
Sbjct: 179 LTLEPQLDDDERKLLHSFQLLSDKKSIFACNVNEDELADAISNPDAHPYVSQVKKYVAEH 238
Query: 290 QSGR-VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ + ISA++E EL ++ EE E+L SLGV +SG+ +LIR+ Y LLGLRTY T+G K
Sbjct: 239 HNAEAIVISARIEEELIDVSEEESREFLESLGVKDSGVSDLIRAVYHLLGLRTYLTTGIK 298
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI AG APQAAGVIH+DFE+GFI AE V YDD V+ G A ARE G LR EGK+
Sbjct: 299 ETRAWTIPAGAKAPQAAGVIHTDFERGFIAAEVVHYDDLVSCGGKAGAREHGKLRIEGKE 358
Query: 409 YIVQEGDVMLFRFNV 423
Y+V++GDV+ FRFNV
Sbjct: 359 YVVKDGDVIEFRFNV 373
>gi|433449079|ref|ZP_20411944.1| GTP-binding protein YchF [Weissella ceti NC36]
gi|429539468|gb|ELA07505.1| GTP-binding protein YchF [Weissella ceti NC36]
Length = 366
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 270/369 (73%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQELVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+V++I+ VVR F+D+DI HV+G V
Sbjct: 60 AEKLVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVNAIVHVVRAFDDDDITHVSGTV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ IN EL+ +DL+ ++KR+ K++K K ++ + AE A L +I+ AL GKP
Sbjct: 120 DPLDDIETINTELILADLEAVDKRISKVEKLAKKGDKASV--AEFAVLSEIKPALEAGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ N+ ++ ++ L LLT KP++YVANVAE D+ADP + + ++ A+ + +
Sbjct: 178 VRSLEFNEDDQAVVQGLFLLTSKPVLYVANVAEDDMADPEAGSYYQQIAEYAAAENAQVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+ E E+ E+ E++ E++ G++E GL LIRS Y LL LRTYFT+G KET+AWT
Sbjct: 238 GISARAEEEIAEMDDEDKAEFMELQGITEPGLNRLIRSAYHLLDLRTYFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
RAGM APQ AGVIHSDFE+GFIRAETVA+ D GS+ A +E G RSEGK+Y+VQ+G
Sbjct: 298 FRAGMKAPQTAGVIHSDFERGFIRAETVAFADLDEFGSMKAVKEAGKRRSEGKEYVVQDG 357
Query: 415 DVMLFRFNV 423
D+M F FNV
Sbjct: 358 DIMEFLFNV 366
>gi|304385708|ref|ZP_07368052.1| GTP-binding protein YchF [Pediococcus acidilactici DSM 20284]
gi|304328212|gb|EFL95434.1| GTP-binding protein YchF [Pediococcus acidilactici DSM 20284]
Length = 368
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 276/374 (73%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++ IN+EL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINMELSLADLESVEKRLAKVQRAAKGRDKDALAEL-----AVLEKLHPVLEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--DL 289
GKPAR+V ++ E +K L LLT KP++YVAN+AE D+ADP S+ + E+ + + D
Sbjct: 175 GKPARAVEFDEAEMQIVKGLFLLTTKPVLYVANIAEDDMADPESSKYFKEIKDYVAEVDP 234
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ + ISA+ E E+ EL +E+ E+L + G+ E GL LI+++Y+LLGL+T+FT+G KE
Sbjct: 235 DAQVLGISAETEQEIAELEDDEKAEFLEAEGIEEPGLNRLIQASYNLLGLQTFFTAGGKE 294
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT + GMTAPQ AG+IHSDFE+GFIRAETV++DD GS+ A RE G LR EGKDY
Sbjct: 295 TRAWTFKKGMTAPQTAGIIHSDFERGFIRAETVSFDDLDKYGSMQAVREAGRLRLEGKDY 354
Query: 410 IVQEGDVMLFRFNV 423
VQ+GD++ FRFNV
Sbjct: 355 HVQDGDIIEFRFNV 368
>gi|394990506|ref|ZP_10383338.1| GTP-binding protein YchF [Sulfuricella denitrificans skB26]
gi|393790771|dbj|GAB72977.1| GTP-binding protein YchF [Sulfuricella denitrificans skB26]
Length = 363
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVGIV VPDPR+ L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNAITSAGIA-AENYPFCTIEPNVGIVEVPDPRIDALTVIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK A +EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE+ D++HV GK+
Sbjct: 60 PQKVQHAIMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFENVDVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SD++VIN EL +DL+ +EK R KL K KD+ + A LEK++ L
Sbjct: 120 DPISDIEVINTELALADLETVEKAVLRTNKLAKSGDKDAVRMM-----ALLEKVRATLDQ 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PAR++ + E +K LCL+TMKP +Y+ANV E+ + NPH+++V LA+ S
Sbjct: 175 GQPARNLNPDKEEAALLKPLCLMTMKPTMYIANVDEAGFTN---NPHLDKVAELAAREGS 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I A +E E+ +L ++ E+LA +G+ E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAICAAIEGEIADLDEADKKEFLADMGLEEPGLNRVIRAAYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DFVA A+E G +RSEGK+Y+V
Sbjct: 292 AWTIHIGDTAPQAAGVIHTDFERGFIRAQTIAYEDFVACNGEHGAKEAGKMRSEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 352 HDGDVMNFLFNV 363
>gi|417916895|ref|ZP_12560461.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. SK95]
gi|342827642|gb|EGU62024.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. SK95]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR FED +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFEDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|417921632|ref|ZP_12565123.1| GTP-binding protein YchF [Streptococcus cristatus ATCC 51100]
gi|342834315|gb|EGU68590.1| GTP-binding protein YchF [Streptococcus cristatus ATCC 51100]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR+V + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTVEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|56460040|ref|YP_155321.1| GTP-dependent nucleic acid-binding protein EngD [Idiomarina
loihiensis L2TR]
gi|56179050|gb|AAV81772.1| Predicted GTPase, probable translation factor [Idiomarina
loihiensis L2TR]
Length = 363
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPDPRL L+ +
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDPRLDKLAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED++IVHV+G +
Sbjct: 60 PERVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDDNIVHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D IN EL +DLD ++K + +L KK K DSQ+K AE A LEK++ AL +G+
Sbjct: 120 DPADDIDTINTELALADLDSVDKSLYRLSKKAKGGDSQAK---AEIAVLEKLKPALDEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+ ER +I+ LLT+KP +Y+ANV E + NPH+++V +A+ +
Sbjct: 177 MARSVELSKDERATIRSYNLLTLKPTMYIANVNEDGFEN---NPHLDKVREIAATENAVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E+E+ EL ++ E+L+ LG E GL +IR Y LL L TYFT+G KE +AW
Sbjct: 234 VPVCAAIESEIAELDEADKEEFLSELGQDEPGLNRVIRGGYELLNLHTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAPQAAG IH+DFEKGFIRAE V YDD++A A++ G R EGK+YIV++
Sbjct: 294 TVKVGSTAPQAAGRIHTDFEKGFIRAEIVGYDDYIANNGEQGAKDAGKWRLEGKEYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVIHFRFNV 363
>gi|406658907|ref|ZP_11067047.1| GTP-binding protein YchF [Streptococcus iniae 9117]
gi|405579122|gb|EKB53236.1| GTP-binding protein YchF [Streptococcus iniae 9117]
Length = 372
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/374 (54%), Positives = 273/374 (72%), Gaps = 7/374 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE A LEKI+ L
Sbjct: 120 DAFVDPMADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFAVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E +KQL LLT KP++YVANV E +ADP +VN + + A+
Sbjct: 179 DGKSARTINFTDEEEKVVKQLFLLTTKPVLYVANVDEDKVADPDDIDYVNIIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA+ E E++EL EE + E+L ++G++ESG+ L R+ Y LLGL TYFT+G KE
Sbjct: 239 AEVVVISARAEEEISELDDEEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGVKE 298
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+Y
Sbjct: 299 VRAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEY 358
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GD+M FRFNV
Sbjct: 359 VVQDGDIMEFRFNV 372
>gi|262368446|ref|ZP_06061775.1| translation-associated GTPase [Acinetobacter johnsonii SH046]
gi|262316124|gb|EEY97162.1| translation-associated GTPase [Acinetobacter johnsonii SH046]
Length = 367
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 263/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 5 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 63
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 64 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 123
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL +DL+ + K + +L K + L A KA L+KI L +GKP
Sbjct: 124 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAL--ATKAVLDKILPLLDEGKP 181
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH++ V LA++ + V
Sbjct: 182 ARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLDAVKKLAAEENAIVV 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ Q+EAE++ L E+R E+L +LG+ E GL +IR+ Y LLGL+TYFT+G +E +AWT
Sbjct: 239 PLCNQIEAEISLLEDEDRAEFLEALGMEEPGLNVVIRAGYGLLGLQTYFTAGVQEVRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE VAY+DFV A A+E G R EGK YIVQ+G
Sbjct: 299 VKVGATAPQAAGVIHTDFEKGFIRAECVAYNDFVQYNGEAGAKEAGKWRLEGKTYIVQDG 358
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 359 DVLHFRFNV 367
>gi|306828593|ref|ZP_07461787.1| GTP-binding protein YchF [Streptococcus mitis ATCC 6249]
gi|304429201|gb|EFM32287.1| GTP-binding protein YchF [Streptococcus mitis ATCC 6249]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|294781875|ref|ZP_06747207.1| GTP-binding protein YchF [Fusobacterium sp. 1_1_41FAA]
gi|294481686|gb|EFG29455.1| GTP-binding protein YchF [Fusobacterium sp. 1_1_41FAA]
Length = 364
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/367 (55%), Positives = 273/367 (74%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDERLNALAQIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+VDP +D
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGQVDPIND 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ IEK + EKL + K K+S + A L K+++ L + K +
Sbjct: 125 IEVINTELIFADIETIEKAIEKHEKLARNKIKESVELM-----AVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +
Sbjct: 180 TLDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G+LR EGK+YIV +GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVLRLEGKEYIVHDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|401681741|ref|ZP_10813637.1| GTP-binding protein YchF [Streptococcus sp. AS14]
gi|400185746|gb|EJO19971.1| GTP-binding protein YchF [Streptococcus sp. AS14]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYTRVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ ++K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTIEFTEEEQKNVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|319940211|ref|ZP_08014564.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
gi|319810682|gb|EFW07012.1| GTP-binding protein [Streptococcus anginosus 1_2_62CV]
Length = 371
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT R GM APQ AG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFRRGMKAPQVAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|323350833|ref|ZP_08086492.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis VMC66]
gi|422822785|ref|ZP_16870978.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK353]
gi|422847884|ref|ZP_16894567.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK72]
gi|422850478|ref|ZP_16897148.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK150]
gi|322123007|gb|EFX94710.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis VMC66]
gi|324989582|gb|EGC21528.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK353]
gi|325686481|gb|EGD28510.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK72]
gi|325695764|gb|EGD37663.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK150]
Length = 376
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/376 (54%), Positives = 275/376 (73%), Gaps = 6/376 (1%)
Query: 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG 111
KI M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+
Sbjct: 3 KIRMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTE 61
Query: 112 LSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVN 171
L K QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 62 LIKPQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQ 121
Query: 172 GK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
G+ VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+
Sbjct: 122 GRESEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKP 180
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 181 VLEDGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAA 240
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 241 TENAEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGE 300
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK
Sbjct: 301 KEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYNDLVHYGSEKAVKEAGRLREEGK 360
Query: 408 DYIVQEGDVMLFRFNV 423
+YIVQ+GD+M FRFNV
Sbjct: 361 EYIVQDGDIMEFRFNV 376
>gi|282849208|ref|ZP_06258593.1| GTP-binding protein YchF [Veillonella parvula ATCC 17745]
gi|416999957|ref|ZP_11940342.1| GTP-binding protein YchF [Veillonella parvula ACS-068-V-Sch12]
gi|282580912|gb|EFB86310.1| GTP-binding protein YchF [Veillonella parvula ATCC 17745]
gi|333976393|gb|EGL77261.1| GTP-binding protein YchF [Veillonella parvula ACS-068-V-Sch12]
Length = 368
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 278/372 (74%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL VL+ +
Sbjct: 1 MSTNLEVGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVDVPDNRLAVLAEM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
S++ +PA++ FVDIAGLV+GAS+GEGLGNKFLSHIR+VD+I QV+RCF+D +I HV+G
Sbjct: 60 FGSKRILPAAMRFVDIAGLVEGASKGEGLGNKFLSHIRQVDAIAQVIRCFDDPNITHVSG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+++IN EL +DL+ +EKR ++++K K+ D ++ AE LE+I + L +
Sbjct: 120 SIDPIRDIEIINTELCLADLESVEKRKQRIEKIAKSGDKDAR---AELPLLERIIEGLGE 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R+ L + E + IK+L LLT KP +YVAN++E +++D +N +V V A + +
Sbjct: 177 AKPVRAQGLEEEELEMIKELTLLTAKPSLYVANISEDEVSDYSANEYVKRVEEYAKNEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++E+E+ EL EE +L LG+ ESGL LI+++Y+LLGL YFT+GE E +
Sbjct: 237 GIVVVSARIESEIAELSEEESAAFLEDLGLEESGLTKLIKASYALLGLINYFTAGEMEAR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G APQAAG IHSD EKGFIRAE V++DD A GS AA+EKGL+R EGKDY++
Sbjct: 297 AWTIVNGTKAPQAAGKIHSDIEKGFIRAEIVSFDDLQACGSQNAAKEKGLVRLEGKDYVM 356
Query: 412 QEGDVMLFRFNV 423
++GDV FRFNV
Sbjct: 357 KDGDVTHFRFNV 368
>gi|300173930|ref|YP_003773096.1| GTP-binding protein YchF [Leuconostoc gasicomitatum LMG 18811]
gi|333447802|ref|ZP_08482744.1| GTP-binding protein YchF [Leuconostoc inhae KCTC 3774]
gi|299888309|emb|CBL92277.1| GTP-binding protein YchF [Leuconostoc gasicomitatum LMG 18811]
Length = 366
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D IN EL+ +DL+ ++KR K+ + A KL AE L+KI+ L G+
Sbjct: 120 DPLDDIDTINTELILADLETVDKRYAKVVR--AARGSDKLAKAELLVLDKIKPTLEAGQS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS++ D E +K L LLT KP++YVAN+AE D+ADP S+ + N++ A+ ++ +
Sbjct: 178 VRSISFTDEEEKLVKGLFLLTSKPVLYVANLAEDDMADPESSRYFNDIKAFAATEKADVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E ++ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEDIAQLAEEDKAEFLEMAGVTEPGLNKLIRAAYHLLDLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQ AGVIHSDFE+GFIRAET+A+DD GS+ A +E G LRSEGK+Y+V +G
Sbjct: 298 FKSGMKAPQTAGVIHSDFERGFIRAETIAFDDLNTFGSVKAVKEAGKLRSEGKEYVVNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|452992699|emb|CCQ95860.1| putative GTPase with RNA binding site [Clostridium ultunense Esp]
Length = 363
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/367 (53%), Positives = 268/367 (73%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + KA+A N+PFCTIEPN+GIV+VPD RL +L+ L K +
Sbjct: 1 MKLGIVGLPNVGKSTLFNALT-SAKAEAENYPFCTIEPNIGIVSVPDKRLDILANLVKPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED ++ HV GK+ P
Sbjct: 60 KIVPATIEFFDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDENVTHVEGKISP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL+ SDL+ I R+ K++K D K + E L+ ++ ++ +P R
Sbjct: 120 VDDIEIINLELMLSDLEIINNRLHKVEKLVKGD---KTYNKELELLKILKDSIEKEQPLR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S+ +D E +K LL++KP++YV N++E DL N +V V A + S + +
Sbjct: 177 SIDFSDEETILLKNFNLLSLKPVLYVCNISEEDLLQGEDNEYVRSVRKYAFEENSEVIVV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++E+E+++L EE+ E+LA LG+ ESGL LI ++Y LLGL ++ TSG KE +AWTI+
Sbjct: 237 SAKIESEISQLNREEKKEFLAELGLEESGLDKLINASYDLLGLMSFLTSGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G AP+AAG IHSD E+GFIRAE V Y D + G A A+EKGL+R EGKDYI+Q+GDV
Sbjct: 297 KGTKAPEAAGKIHSDIERGFIRAEVVNYKDLIECGGTAQAKEKGLVRLEGKDYIIQDGDV 356
Query: 417 MLFRFNV 423
+LFRFNV
Sbjct: 357 VLFRFNV 363
>gi|262067285|ref|ZP_06026897.1| GTP-binding protein YchF [Fusobacterium periodonticum ATCC 33693]
gi|291379011|gb|EFE86529.1| GTP-binding protein YchF [Fusobacterium periodonticum ATCC 33693]
Length = 364
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/367 (55%), Positives = 274/367 (74%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDGRLNELAKIINPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D +++HV+G+V+P SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDENVIHVSGEVNPISD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ IEK + EKL + K K+S + A L K+++ L + K +
Sbjct: 125 IEVINTELIFADIETIEKAIEKHEKLARNKIKESVELM-----AVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +
Sbjct: 180 TLDLTDEEKQVLKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDDESKKEFLETLGVKEAGLNRLIRAGFKLLGLQTYFTAGVKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G+LR EGK+YIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKYSGWKGSQENGVLRLEGKEYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|333398341|ref|ZP_08480154.1| GTP-binding protein YchF [Leuconostoc gelidum KCTC 3527]
gi|406600534|ref|YP_006745880.1| GTP-binding protein YchF [Leuconostoc gelidum JB7]
gi|406372069|gb|AFS40994.1| GTP-binding protein YchF [Leuconostoc gelidum JB7]
Length = 366
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 267/369 (72%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D IN EL+ +DL+ ++KR K+ + A KL AE L+KI+ L G+
Sbjct: 120 DPLDDIDTINTELILADLETVDKRYAKVVR--AARGSDKLAKAELLVLDKIKPTLEAGQS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ D E+ +K L LLT KP++YVAN+AE D+ADP S+ + N++ A+ ++ +
Sbjct: 178 VRSINFTDEEQKVVKGLFLLTSKPVLYVANLAEDDMADPESSRYFNDIKAFAATEKADVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E ++ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEDIAQLAEEDKAEFLEMAGVAEPGLNKLIRAAYHLLDLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQ AGVIHSDFE+GFIRAET+A+DD GS+ A +E G LRSEGK+Y+V +G
Sbjct: 298 FKSGMKAPQTAGVIHSDFERGFIRAETIAFDDLNTFGSVKAVKEAGKLRSEGKEYVVNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|418964259|ref|ZP_13516076.1| GTP-binding protein YchF [Streptococcus anginosus subsp. whileyi
CCUG 39159]
gi|383341295|gb|EID19556.1| GTP-binding protein YchF [Streptococcus anginosus subsp. whileyi
CCUG 39159]
Length = 371
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SNFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPNNIEYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AKVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|315612156|ref|ZP_07887071.1| GTP-binding protein YchF [Streptococcus sanguinis ATCC 49296]
gi|331265442|ref|YP_004325072.1| putative GTP-binding protein [Streptococcus oralis Uo5]
gi|417940547|ref|ZP_12583835.1| GTP-binding protein YchF [Streptococcus oralis SK313]
gi|419783075|ref|ZP_14308868.1| GTP-binding protein YchF [Streptococcus oralis SK610]
gi|315315717|gb|EFU63754.1| GTP-binding protein YchF [Streptococcus sanguinis ATCC 49296]
gi|326682114|emb|CBY99730.1| putative GTP-binding protein [Streptococcus oralis Uo5]
gi|343389428|gb|EGV02013.1| GTP-binding protein YchF [Streptococcus oralis SK313]
gi|383182619|gb|EIC75172.1| GTP-binding protein YchF [Streptococcus oralis SK610]
Length = 371
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|400291169|ref|ZP_10793196.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
ratti FA-1 = DSM 20564]
gi|399921960|gb|EJN94777.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
ratti FA-1 = DSM 20564]
Length = 371
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDARLQKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ + KR +++K A+ + K AE LEKI+ L
Sbjct: 120 DAFVDPIADIETINLELILADLESVNKRYARVEK-IARTQKDKDSVAEFKVLEKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +A+P +V ++ N A+
Sbjct: 179 DGKSARTIDFTEDEQKIVKGLFLLTTKPVLYVANVDEDKVANPDDIEYVQQIRNFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEAVVISARAEEEISELDDEDKGEFLEALGLAESGVDKLTRAAYQLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|150390656|ref|YP_001320705.1| GTP-binding protein YchF [Alkaliphilus metalliredigens QYMF]
gi|149950518|gb|ABR49046.1| GTP-binding protein YchF [Alkaliphilus metalliredigens QYMF]
Length = 364
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/368 (57%), Positives = 280/368 (76%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPN+G+VAVPD RL L + SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIEPNIGVVAVPDYRLSNLKEMYNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EF DIAGLVKGAS+GEGLGNKFLSHIREV+SI+ VVRCFED+++ HV+G VDP
Sbjct: 60 KVIPAAIEFYDIAGLVKGASKGEGLGNKFLSHIREVESIVHVVRCFEDSNVTHVDGNVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+ SDL+ +EKR+ KL+K + K +S L + E L ++Q L G AR
Sbjct: 120 LRDIETINLELILSDLESVEKRIPKLEK-QVKLDKSLLPELE--LLHQLQGVLEQGLSAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
S LN+ ++ +K+ LL+ KPIIYVANV+E ++ D GS NPHV + A + S V
Sbjct: 177 SQDLNEDQQKMLKEFTLLSAKPIIYVANVSEDEVGDGGSDNPHVTTLREFAMEEGSEVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++EAE++EL EE+ +L LG+++SGL L++++YSLLGL +Y T+G KE +AWTI
Sbjct: 237 ICAKIEAEISELEEEEKQGFLEDLGLTQSGLDRLVQASYSLLGLISYLTAGPKEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
GM APQAAG IH+DFE+GFIRAE VA+D + AGS AA+EKG + EGKDYIV++GD
Sbjct: 297 TRGMKAPQAAGKIHTDFERGFIRAEVVAFDKLMEAGSHTAAKEKGHVGIEGKDYIVKDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VILFRFNV 364
>gi|295109199|emb|CBL23152.1| GTP-binding protein YchF [Ruminococcus obeum A2-162]
Length = 365
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLKLIGDFYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G +DP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDPNVIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K+ K D ++ E L+K+++ L DG A
Sbjct: 120 LRDIETINLELIFSDIEILERRIAKVTKTARMDKEAA---KELDFLQKVKKHLEDGNMAI 176
Query: 237 SVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ L ++ E + LLT KP+IY ANV+E DLAD G SN HV V A++ +S
Sbjct: 177 TMELESEDEEGWMGTYNLLTWKPVIYAANVSEDDLADDGESNAHVQAVRKYAAEQKSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E++EL +E+ +L LG+ ESGL L++++YSLLGL ++ TSGE ET+AWT
Sbjct: 237 VICAEIEEEISELDDDEKKMFLEDLGLKESGLEKLVKASYSLLGLMSFLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGL+R EGK+YIVQ+G
Sbjct: 297 IKTGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLVRMEGKEYIVQDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|270290034|ref|ZP_06196260.1| GTP-binding protein YchF [Pediococcus acidilactici 7_4]
gi|418069979|ref|ZP_12707256.1| GTPase, translation factor [Pediococcus acidilactici MA18/5M]
gi|270281571|gb|EFA27403.1| GTP-binding protein YchF [Pediococcus acidilactici 7_4]
gi|357536510|gb|EHJ20541.1| GTPase, translation factor [Pediococcus acidilactici MA18/5M]
Length = 368
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 276/374 (73%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++ IN+EL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINMELSLADLESVEKRLAKVQRAAKGRDKDALAEL-----AVLEKLHPVLEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--DL 289
GKPAR+V ++ E +K L LLT KP++YVAN+AE D+ADP S+ + E+ + + D
Sbjct: 175 GKPARAVEFDEAEMPIVKGLFLLTTKPVLYVANIAEDDMADPESSKYFKEIKDYVAEVDP 234
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ + ISA+ E E+ EL +E+ E+L + G+ E GL LI+++Y+LLGL+T+FT+G KE
Sbjct: 235 DAQVLGISAETEQEIAELEDDEKAEFLEAEGIEEPGLNRLIQASYNLLGLQTFFTAGGKE 294
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT + GMTAPQ AG+IHSDFE+GFIRAETV++DD GS+ A RE G LR EGKDY
Sbjct: 295 TRAWTFKKGMTAPQTAGIIHSDFERGFIRAETVSFDDLDKYGSMQAVREAGRLRLEGKDY 354
Query: 410 IVQEGDVMLFRFNV 423
VQ+GD++ FRFNV
Sbjct: 355 HVQDGDIIEFRFNV 368
>gi|322420136|ref|YP_004199359.1| GTP-binding protein YchF [Geobacter sp. M18]
gi|320126523|gb|ADW14083.1| GTP-binding protein YchF [Geobacter sp. M18]
Length = 364
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 271/370 (73%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKST+FNA+ G A++AN+PFCTI+PNVGIV+VPDPR+ L+ +
Sbjct: 1 MGFNCGIVGLPNVGKSTIFNALTSAG-AESANYPFCTIDPNVGIVSVPDPRMDKLAEIVH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EF+DIAGLVKGASQGEGLGNKFL HIR VD+IL VVRCFE+ ++VHV+G V
Sbjct: 60 PERILPTTIEFLDIAGLVKGASQGEGLGNKFLGHIRSVDAILHVVRCFENENVVHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
P D++VI EL +DLD +EKR+ + K+ ++ D ++K +D E +K++ L G
Sbjct: 120 SPVRDIEVIQTELALADLDTVEKRLLRTEKQARSGDKKAK-EDVE--FCQKVKATLEKGL 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R + + E+ ++ + L+T KP++YVANVAE DL G +P+V EV LA+ +G
Sbjct: 177 SPRDLAETEDEKLILRDMHLMTAKPVLYVANVAEDDL--EGKHPYVEEVRQLAAKEGNGV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I +EAE++EL +E+ +L +G++ESGL LIRS Y LLGL TYFT+G KE +AW
Sbjct: 235 VFICGSIEAEISELAGDEKQAFLEEMGLAESGLDRLIRSGYELLGLITYFTAGVKEVRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP AAGVIHSDFEKGFIRAE ++Y DF+AAG + A+EKGL+R EGK+Y+VQ+
Sbjct: 295 TITRGTKAPGAAGVIHSDFEKGFIRAEVISYQDFIAAGGESGAKEKGLMRLEGKEYVVQD 354
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 355 GDVMHFRFNV 364
>gi|91775028|ref|YP_544784.1| GTP-dependent nucleic acid-binding protein EngD [Methylobacillus
flagellatus KT]
gi|91709015|gb|ABE48943.1| conserved hypothetical protein [Methylobacillus flagellatus KT]
Length = 361
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 267/368 (72%), Gaps = 8/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G +AAN+PFCTIEPNVGIV VPDPRL L + Q
Sbjct: 1 MKCGIVGLPNVGKSTLFNAITRAG-IEAANYPFCTIEPNVGIVEVPDPRLKPLIEIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +IVHV GKVDP
Sbjct: 60 KVQPAIVEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDGNIVHVAGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
+DV+ IN EL +D++ +EK +++ KK K+ D ++ A A LEK+QQ L G P
Sbjct: 120 LADVETINTELALADMETVEKTLQRESKKAKSGDKEAI---ALCAVLEKVQQHLDQGHPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
R++ L++ + IK LCL+T+KP++Y+ANV E +NP + +V+ L + V
Sbjct: 177 RTLGLDEDQLKLIKPLCLITVKPVMYLANVDEEGF---DNNPLLEKVLELGKKESAPVVA 233
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A++E+E+ +L E++ +LA LG+ E GL +IR+ Y LLGL+TYFT+G KE +AWTI
Sbjct: 234 ICAKIESEIADLEDEDKAMFLAELGLEEPGLDRVIRAAYDLLGLQTYFTAGVKEVRAWTI 293
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
R G TAPQAAGVIH+DFE+GFIRAE +AYD++V A+E G +R EGKDYIVQ+GD
Sbjct: 294 RKGSTAPQAAGVIHTDFERGFIRAEVIAYDEYVKHKGEKGAQEAGKMRLEGKDYIVQDGD 353
Query: 416 VMLFRFNV 423
+M FRFNV
Sbjct: 354 IMHFRFNV 361
>gi|306826190|ref|ZP_07459525.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|322375219|ref|ZP_08049733.1| GTP-binding protein YchF [Streptococcus sp. C300]
gi|358465163|ref|ZP_09175114.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 058 str.
F0407]
gi|414157557|ref|ZP_11413854.1| GTP-binding protein YchF [Streptococcus sp. F0441]
gi|417794545|ref|ZP_12441795.1| GTP-binding protein YchF [Streptococcus oralis SK255]
gi|421488194|ref|ZP_15935587.1| GTP-binding protein YchF [Streptococcus oralis SK304]
gi|304431666|gb|EFM34647.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|321280719|gb|EFX57758.1| GTP-binding protein YchF [Streptococcus sp. C300]
gi|334269068|gb|EGL87498.1| GTP-binding protein YchF [Streptococcus oralis SK255]
gi|357065921|gb|EHI76091.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 058 str.
F0407]
gi|400368940|gb|EJP21946.1| GTP-binding protein YchF [Streptococcus oralis SK304]
gi|410871993|gb|EKS19938.1| GTP-binding protein YchF [Streptococcus sp. F0441]
Length = 371
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|289166913|ref|YP_003445180.1| GTP-binding protein [Streptococcus mitis B6]
gi|288906478|emb|CBJ21308.1| GTP-binding protein [Streptococcus mitis B6]
Length = 371
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|99080065|ref|YP_612219.1| GTP-dependent nucleic acid-binding protein EngD [Ruegeria sp.
TM1040]
gi|99036345|gb|ABF62957.1| hypothetical protein TM1040_0224 [Ruegeria sp. TM1040]
Length = 365
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPD RL L+ +++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV+G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D D I EL+ +DL+ IEKR L +K K D +++ +D AA Q L DGK
Sbjct: 121 DPVADADTIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAA---AQAMLEDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++ ++ + L LLT KP++YV NV ES+ + N H +V +A+ +
Sbjct: 178 PARLVEVDAEDQKAWTMLQLLTTKPVLYVCNVGESESVE--GNAHSAKVAEMAAAQGNAH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISAQ+E E+++L EE +L +G++E+GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAQIEEEISQLEPEEAQMFLDEMGLAEAGLDRLIRAGYELLHLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR+G APQAAGVIH DFEKGFIRAET+AYDD++A G + A+E G +R+EGK YIV++
Sbjct: 296 TIRSGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIACGGESGAKEAGKMRAEGKSYIVKD 355
Query: 414 GDVMLFRFN 422
GDVM F FN
Sbjct: 356 GDVMHFLFN 364
>gi|222529619|ref|YP_002573501.1| GTP-dependent nucleic acid-binding protein EngD
[Caldicellulosiruptor bescii DSM 6725]
gi|222456466|gb|ACM60728.1| GTP-binding protein YchF [Caldicellulosiruptor bescii DSM 6725]
Length = 362
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 277/370 (74%), Gaps = 11/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+VAVPD RL VL+ + +
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AEAANYPFCTIEPNVGVVAVPDERLDVLARIYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGNKFLSHIREVD+I+ VVRCF+D DIVHV G V+P
Sbjct: 60 KVTPAFIEFVDIAGLVKGASKGEGLGNKFLSHIREVDAIVHVVRCFDDTDIVHVEGSVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+ D+++INLEL+F+D++ +E+R++K +K AK+S+ + + E +EKI L GK AR
Sbjct: 120 RRDIEIINLELIFADMEMLERRLDKTRK-LAKNSKEAVHELE--IMEKIYSTLESGKMAR 176
Query: 237 SVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
++ +D D +K L LLT KP IY AN++E D+ N +V V +A++ S
Sbjct: 177 TLKFDD--EDDLKFVNSLNLLTFKPTIYAANISEKDIGK--ENEYVKVVKEIAAEEGSEV 232
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ LP EE+ E+L LG+ +SGL NLI++ Y LLGL ++ T+GEKE +AW
Sbjct: 233 IVICAKIEEEIAALPEEEKKEFLKELGIEKSGLDNLIQAGYRLLGLISFLTAGEKEVRAW 292
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFEKGFIRAE V ++ V G A A+EKGL+RSEGKDY++Q+
Sbjct: 293 TIKKGTKAPQAAGKIHSDFEKGFIRAEVVPFEVLVECGGFAQAKEKGLVRSEGKDYVMQD 352
Query: 414 GDVMLFRFNV 423
GDV++FRFNV
Sbjct: 353 GDVVIFRFNV 362
>gi|313889527|ref|ZP_07823173.1| GTP-binding protein YchF [Streptococcus pseudoporcinus SPIN 20026]
gi|416852391|ref|ZP_11909536.1| GTP-binding protein YchF [Streptococcus pseudoporcinus LQ 940-04]
gi|313122139|gb|EFR45232.1| GTP-binding protein YchF [Streptococcus pseudoporcinus SPIN 20026]
gi|356739880|gb|EHI65112.1| GTP-binding protein YchF [Streptococcus pseudoporcinus LQ 940-04]
Length = 371
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DLD I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPMADIDTINLELILADLDSINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E +K L LLT KP++YVANV E +ADP +V ++ A
Sbjct: 179 DGKSARTIDFTDEEEKVVKGLFLLTTKPVLYVANVDEDRVADPDDIDYVKQIRAFADTEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL +++VE+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDDDKVEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|168186148|ref|ZP_02620783.1| GTP-binding protein YchF [Clostridium botulinum C str. Eklund]
gi|169295641|gb|EDS77774.1| GTP-binding protein YchF [Clostridium botulinum C str. Eklund]
Length = 365
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/370 (54%), Positives = 273/370 (73%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYDTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF D++IVHV G ++P
Sbjct: 60 KKVYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFNDDNIVHVEGSINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD--AEKAALEKIQQALMDGKP 234
D++ INLEL+ +DL+ IE+R EK A+ ++S +K+ AE LEK+++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TARSARSGVKEAKAELPVLEKVKEHLESNKP 175
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
RS+ L+ E++ ++ L+T KPI+YV+N+ E DL + N V +V A D S
Sbjct: 176 VRSLELDKEEQEIVRGFFLITSKPILYVSNICEDDLVSENTENEFVKKVKEYAKDEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNKLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AA IH+D E+GFIRAE ++YDD + GS AAA+EKG+ R EGKDY++Q+
Sbjct: 296 TIVKGTKAPKAASKIHTDIERGFIRAEVISYDDLIECGSEAAAKEKGVFRLEGKDYVMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVNFRFNV 365
>gi|345874961|ref|ZP_08826758.1| hypothetical protein l11_08420 [Neisseria weaveri LMG 5135]
gi|417957437|ref|ZP_12600359.1| hypothetical protein l13_07680 [Neisseria weaveri ATCC 51223]
gi|343968269|gb|EGV36500.1| hypothetical protein l13_07680 [Neisseria weaveri ATCC 51223]
gi|343969681|gb|EGV37890.1| hypothetical protein l11_08420 [Neisseria weaveri LMG 5135]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 271/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K A EK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAITR----EGKRAKSGDKDAQKLVALCEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E ++ L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 176 KPVRSFGLDAEELAMLRPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL EE+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAALESEIAELEDEEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV G A A+E G +R+EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVTLGGEAKAKEAGKMRAEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVIHFLFNV 363
>gi|189345890|ref|YP_001942419.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium
limicola DSM 245]
gi|189340037|gb|ACD89440.1| GTP-binding protein YchF [Chlorobium limicola DSM 245]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPD R+H+++ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDERMHLIANVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D++I+HV GK+
Sbjct: 60 TPTLVPATLEIVDIAGLVRGASKGEGLGNQFLSHIREVDAIVHVVRCFDDSNIIHVEGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ I+ EL+ +DLD +E+R+EKL+K K+ + L+ E A E+I L +G P
Sbjct: 120 DPADDIATIDTELMLADLDSMERRIEKLRKNARKEKELLLQ-VELA--ERIITGLSEGVP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR++ E++ +Q LLT KPI+Y ANV E+DL P N + V +A+ S +
Sbjct: 177 ARAIIQGPEEKELARQFFLLTSKPILYAANVGEADL--PAGNAYTERVAEIAASSGSMML 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA+ EA++ ELP EER E+L SLG+ SGL +I++ Y LLGL+TYFT+GEKE AWT
Sbjct: 235 IISAKSEADIAELPEEERPEFLESLGLEMSGLDRVIKTAYDLLGLQTYFTAGEKEVHAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+AAG IHSDFEKGFIRAE ++Y D + GS +E G LRSEG+DYIV++G
Sbjct: 295 IRKGAAAPEAAGAIHSDFEKGFIRAEVMSYRDLIELGSEQKVKEAGKLRSEGRDYIVRDG 354
Query: 415 DVMLFRFNV 423
DV++FRFNV
Sbjct: 355 DVIVFRFNV 363
>gi|254804334|ref|YP_003082555.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis alpha14]
gi|421538810|ref|ZP_15984982.1| GTP-binding protein EngD [Neisseria meningitidis 93003]
gi|254667876|emb|CBA03961.1| predicted GTPase translation factor [Neisseria meningitidis
alpha14]
gi|402315517|gb|EJU51080.1| GTP-binding protein EngD [Neisseria meningitidis 93003]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|347531305|ref|YP_004838068.1| GTP-binding protein YchF [Roseburia hominis A2-183]
gi|345501453|gb|AEN96136.1| GTP-binding protein YchF [Roseburia hominis A2-183]
Length = 366
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 276/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PN+GIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNIGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K+ E +E ++ L DGK AR
Sbjct: 120 ARDIETINLELIFSDIEILDRRIAKIAK-QARMDKTLAKELE--LVEAVKAHLEDGKMAR 176
Query: 237 SVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
S + D E I K LLT KP IY ANVAE DLAD G SNPHV +V +A++ +
Sbjct: 177 SFEVPDDEDAQIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMATEEGAKV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I AQ+E EL EL EE+ EYL LGV SGL L+ ++YS+LGL ++ T+GE E +AW
Sbjct: 237 FVICAQIEQELAELSEEEKKEYLDDLGVESSGLDKLVAASYSILGLISFLTAGEDECRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG++ EGKDY+V++
Sbjct: 297 TIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVGMEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVILFRFNV 366
>gi|302393059|ref|YP_003828879.1| GTP-binding protein YchF [Acetohalobium arabaticum DSM 5501]
gi|302205136|gb|ADL13814.1| GTP-binding protein YchF [Acetohalobium arabaticum DSM 5501]
Length = 365
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 272/369 (73%), Gaps = 4/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ E G A A N+PFCTI+PN+GIV VPD RL VL+ +
Sbjct: 1 MGMKCGIVGLPNVGKSTLFNAITEVG-AGAENYPFCTIDPNMGIVKVPDKRLEVLTEIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ P ++EFVDIAGLVKGAS GEGLGNKFLSHIREVD+I+ VVRCFED+DI HV G +
Sbjct: 60 PQETTPTAIEFVDIAGLVKGASDGEGLGNKFLSHIREVDAIIHVVRCFEDSDITHVEGDI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+ IN EL+ +DL+ +E ++EK ++ K + K K+ E LEKI+ AL +G+P
Sbjct: 120 DPLRDIGTINTELILADLETVENKIEKTER-MLKSGEKKYKE-EMEVLEKIKTALDNGQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+V L+ E++ I+ LLT+KP +YVANV+E ++ S HV + N A+ ++ +
Sbjct: 178 ARNVELSSKEKERIRDCHLLTLKPTLYVANVSEDEIGKEESR-HVQAIRNHAASEEAEVI 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA+VEAE+ EL + E +L LG+ ESGL LI++ Y LLGL T+FT+G KE +AWT
Sbjct: 237 TVSAEVEAEVAELSTTEEELFLEELGIEESGLDKLIKAGYKLLGLITFFTAGPKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAP+AAG IH+D +KGFIRAE V YD V AGS A AR++G+LR EGKDYI+Q+G
Sbjct: 297 VKKGSTAPEAAGKIHTDMQKGFIRAEVVTYDKLVEAGSFADARDEGVLRVEGKDYIIQDG 356
Query: 415 DVMLFRFNV 423
DV FRFNV
Sbjct: 357 DVCYFRFNV 365
>gi|196228717|ref|ZP_03127583.1| GTP-binding protein YchF [Chthoniobacter flavus Ellin428]
gi|196226998|gb|EDY21502.1| GTP-binding protein YchF [Chthoniobacter flavus Ellin428]
Length = 389
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 224/390 (57%), Positives = 277/390 (71%), Gaps = 25/390 (6%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
L AGIVGLPNVGKSTLFNAV + KAQAAN+PFCTI+PNVG+V VPDPRL LS LS S+
Sbjct: 2 LSAGIVGLPNVGKSTLFNAVTKTQKAQAANYPFCTIDPNVGVVTVPDPRLQALSNLSHSK 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS GEGLGN+FLSHIREV++I+QVVRCFED DI HV G VDP
Sbjct: 62 KIVPAAIEFVDIAGLVKGASAGEGLGNQFLSHIREVNAIVQVVRCFEDADIHHVAGSVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VIN EL+ +DL ++KR + ++ KA S K AE A EK+ L GKPA
Sbjct: 122 VRDIEVINTELILADLAAVQKRAD--RQTKAARSGDKAAKAEIAVCEKLIPHLDAGKPAT 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD---------------PGSN----- 276
++ L+D E +++ LL+ KP I+ NVAE+DLA+ P N
Sbjct: 180 TLPLSDEEAKIMREFFLLSGKPTIFACNVAEADLANVVAIVEAAKDNEGVKPSENVELTP 239
Query: 277 --PHVNEVMNLA-SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRST 333
+V V + A S + V ISAQ+E+EL L +EE EYLA +GV+ SG+ LIR+
Sbjct: 240 TARYVQAVQDYARSHFGTEAVVISAQIESELATLAAEEAAEYLAGIGVASSGVDALIRAV 299
Query: 334 YSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSL 393
Y LLGLRTY T+GE+ET+AWTIRAG AP AAGVIH+DFE+GFI AETV +DD ++ GS
Sbjct: 300 YHLLGLRTYLTTGEQETRAWTIRAGDKAPAAAGVIHTDFERGFIAAETVHFDDLISLGSH 359
Query: 394 AAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
A ARE G LR EGK+Y+V++GDVM FRFNV
Sbjct: 360 AKAREAGKLRIEGKEYVVKDGDVMEFRFNV 389
>gi|85713255|ref|ZP_01044280.1| Predicted GTPase, probable translation factor [Idiomarina baltica
OS145]
gi|85692924|gb|EAQ30897.1| Predicted GTPase, probable translation factor [Idiomarina baltica
OS145]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 266/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+VAVPDPRL VL +
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVAVPDPRLDVLESIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED++IVHV+G +
Sbjct: 60 PQKVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDDNIVHVSGGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D+D IN EL +DLD ++K + +L KK K D+Q+K AE A LEK++ AL +G+
Sbjct: 120 NPADDIDTINTELALADLDSVDKSLHRLGKKAKGGDAQAK---AEIAVLEKLKPALDEGE 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L D E+ I+ LLT+KP +Y+ANV E +NPH+ V +A+ +
Sbjct: 177 MARSVHLTDDEKAVIRSYNLLTLKPTMYIANVNEDGFE---NNPHLETVRQIAAKENAVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E+E+ EL +++ +L LG +E GL +IR Y LL L+TYFT+G KE +AW
Sbjct: 234 VPVCAAIESEIAELDDDDKAAFLEELGQAEPGLNRVIRGGYQLLNLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G +APQAAG IH+DFEKGFIRAE V YDD+V A++ G R EGK+YIV++
Sbjct: 294 TVKIGASAPQAAGRIHTDFEKGFIRAEVVGYDDYVEYNGEQGAKDAGKWRLEGKEYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVIHFRFNV 363
>gi|226939278|ref|YP_002794349.1| GTP-dependent nucleic acid-binding protein EngD [Laribacter
hongkongensis HLHK9]
gi|226714202|gb|ACO73340.1| YchF [Laribacter hongkongensis HLHK9]
Length = 363
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 269/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPDPRL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDPRLDELSKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCFED +IVHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFEDPNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ I EL +DL +EK + + KK KA D ++ A A LEK+ L GK
Sbjct: 120 DPIADIETIGTELALADLSAVEKALNREGKKAKAGDKDAR---ALVAVLEKLVPHLDQGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ L+ E +K LCLLT+KP +YVANVAE AD N H++ + LA +
Sbjct: 177 PARSLELSPEELAIVKPLCLLTIKPAMYVANVAEDGFAD---NAHLDRLKALADAEGAPV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E+E+ +L ++ ++LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VALCASIESEIADLDDADKTDFLAEMGLEEPGLNRLIRAGYKLLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAGVIH+DFE+GFIRA+T+++ DF+ G A A+E G +R+EGK+Y+VQ+
Sbjct: 294 TIHVGDTAPQAAGVIHTDFERGFIRAQTISFADFIQYGGEAKAKEAGKMRAEGKEYVVQD 353
Query: 414 GDVMLFRFNV 423
GDVM F FNV
Sbjct: 354 GDVMNFLFNV 363
>gi|315222840|ref|ZP_07864725.1| GTP-binding protein YchF [Streptococcus anginosus F0211]
gi|421490275|ref|ZP_15937649.1| GTP-binding protein YchF [Streptococcus anginosus SK1138]
gi|315188076|gb|EFU21806.1| GTP-binding protein YchF [Streptococcus anginosus F0211]
gi|400373680|gb|EJP26608.1| GTP-binding protein YchF [Streptococcus anginosus SK1138]
Length = 371
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYTRVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIEYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|319945978|ref|ZP_08020227.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
australis ATCC 700641]
gi|417919222|ref|ZP_12562759.1| GTP-binding protein YchF [Streptococcus australis ATCC 700641]
gi|319747786|gb|EFW00031.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
australis ATCC 700641]
gi|342834352|gb|EGU68626.1| GTP-binding protein YchF [Streptococcus australis ATCC 700641]
Length = 371
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ + A
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIEYVKQIRDFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|416350635|ref|ZP_11680937.1| GTP-binding protein YchF [Clostridium botulinum C str. Stockholm]
gi|338196200|gb|EGO88408.1| GTP-binding protein YchF [Clostridium botulinum C str. Stockholm]
Length = 365
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 273/370 (73%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D++ INLEL+ +DL+ IE+R EK + ++S +K+A E LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKIELPILEKVKAHLEANKP 175
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENEFVKKVKEYAKEEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AAG IH+D E+GFIRAE V+Y+D V GS AAA+EKGL R EGKDY++Q+
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYNDLVECGSEAAAKEKGLFRLEGKDYVMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVNFRFNV 365
>gi|403052551|ref|ZP_10907035.1| GTP-binding protein YchF [Acinetobacter bereziniae LMG 1003]
gi|445424458|ref|ZP_21436939.1| GTP-binding protein YchF [Acinetobacter sp. WC-743]
gi|444754509|gb|ELW79123.1| GTP-binding protein YchF [Acinetobacter sp. WC-743]
Length = 363
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 264/370 (71%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + A A NFPFCTIEPN GIV VPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAAIA-AENFPFCTIEPNTGIVPVPDPRLDKLTAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HVNGK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFEDENVIHVNGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+ IN EL +DL+ + K + +L K K D ++ A KA L+KI L +GK
Sbjct: 120 DPLDDIATINTELALADLETVTKAVTRLAKSAKGGDKEAV---ATKAVLDKILPLLDEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ L+D ER ++ L+T+KP +Y+ANVAE + NPH+ V LA++ +
Sbjct: 177 PARAADLDDDERKLVRGFGLMTLKPTMYIANVAEDGFEN---NPHLEAVKKLAAEENAIV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + Q+EAE++ L E+R E+L +LG+ E GL +IR+ YSLLGL+TYFT+G +E +AW
Sbjct: 234 VPLCNQIEAEISLLDDEDRAEFLEALGMEEPGLNVVIRAGYSLLGLQTYFTAGVQEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAPQAAGVIH+DFEKGFIRAE +AYDDF+ A+E G R EGK YIVQ+
Sbjct: 294 TVKVGATAPQAAGVIHTDFEKGFIRAECIAYDDFIQFNGENGAKEAGKWRLEGKTYIVQD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVLHFRFNV 363
>gi|116490233|ref|YP_809777.1| GTPase, translation factor [Oenococcus oeni PSU-1]
gi|118586489|ref|ZP_01543933.1| GTP-binding protein [Oenococcus oeni ATCC BAA-1163]
gi|290889615|ref|ZP_06552705.1| hypothetical protein AWRIB429_0095 [Oenococcus oeni AWRIB429]
gi|419759238|ref|ZP_14285544.1| GTPase, translation factor [Oenococcus oeni AWRIB304]
gi|419857204|ref|ZP_14379914.1| GTPase, translation factor [Oenococcus oeni AWRIB202]
gi|419858164|ref|ZP_14380842.1| GTPase, translation factor [Oenococcus oeni DSM 20252 = AWRIB129]
gi|421183865|ref|ZP_15641294.1| GTPase, translation factor [Oenococcus oeni AWRIB318]
gi|421187064|ref|ZP_15644443.1| GTPase, translation factor [Oenococcus oeni AWRIB418]
gi|421193330|ref|ZP_15650579.1| GTPase, translation factor [Oenococcus oeni AWRIB553]
gi|421195862|ref|ZP_15653065.1| GTPase, translation factor [Oenococcus oeni AWRIB568]
gi|421196338|ref|ZP_15653527.1| GTPase, translation factor [Oenococcus oeni AWRIB576]
gi|116090958|gb|ABJ56112.1| Predicted GTPase, probable translation factor [Oenococcus oeni
PSU-1]
gi|118433053|gb|EAV39775.1| GTP-binding protein [Oenococcus oeni ATCC BAA-1163]
gi|290480813|gb|EFD89447.1| hypothetical protein AWRIB429_0095 [Oenococcus oeni AWRIB429]
gi|399904160|gb|EJN91622.1| GTPase, translation factor [Oenococcus oeni AWRIB304]
gi|399964355|gb|EJN98997.1| GTPase, translation factor [Oenococcus oeni AWRIB418]
gi|399968502|gb|EJO02935.1| GTPase, translation factor [Oenococcus oeni AWRIB318]
gi|399972534|gb|EJO06734.1| GTPase, translation factor [Oenococcus oeni AWRIB553]
gi|399974988|gb|EJO09057.1| GTPase, translation factor [Oenococcus oeni AWRIB568]
gi|399977538|gb|EJO11518.1| GTPase, translation factor [Oenococcus oeni AWRIB576]
gi|410498269|gb|EKP89725.1| GTPase, translation factor [Oenococcus oeni AWRIB202]
gi|410499088|gb|EKP90525.1| GTPase, translation factor [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 367
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 195/369 (52%), Positives = 271/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGVVEVPDSRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I++VVR FED++I HV GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIEVVRAFEDSEITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++ IN EL+ +D++QI+KR K++K A +S+ K AE L+KI+ L GKP
Sbjct: 120 DPIADIETINTELIIADMEQIDKRYSKIEKA-AVNSKDKAAIAEYNVLKKIKPVLEAGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ ++ E+ + L LT KP++YVAN++E D+ADP S+ + + A+ + +
Sbjct: 179 VRSLQFDEEEKKIVHNLFFLTDKPMLYVANISEGDMADPASSQFYQAISDYAAKDGAEVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++A+ E E++E+ ++ ++L GVSE GL LIR+ Y LLGLRT+FT+G KET+AWT
Sbjct: 239 GLAAKTEEEISEMDQADKADFLEMAGVSEPGLNKLIRAAYHLLGLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQ AG+IHSDFE+GFIRAET+++ D GS+AA + G LRSEGK+Y+VQ+G
Sbjct: 299 FKSGMKAPQVAGIIHSDFERGFIRAETISFPDLDKLGSVAAVKAAGKLRSEGKEYLVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIINFRFNV 367
>gi|54298643|ref|YP_125012.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila str. Paris]
gi|53752428|emb|CAH13860.1| hypothetical protein lpp2707 [Legionella pneumophila str. Paris]
Length = 363
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/369 (56%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSNIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ V A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVVHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L G P
Sbjct: 120 DPLSDIEVINTELALADMETLEKSL--LKVGKNSKSGNKEAIFELKTLEKIKAHLDAGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS + V
Sbjct: 178 VRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G LR EGK+YIV +G
Sbjct: 295 IRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAGKLRLEGKEYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|385261850|ref|ZP_10039967.1| GTP-binding protein YchF [Streptococcus sp. SK643]
gi|385192572|gb|EIF39977.1| GTP-binding protein YchF [Streptococcus sp. SK643]
Length = 371
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKSLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|401683905|ref|ZP_10815790.1| GTP-binding protein YchF [Streptococcus sp. BS35b]
gi|419780874|ref|ZP_14306712.1| GTP-binding protein YchF [Streptococcus oralis SK100]
gi|383184825|gb|EIC77333.1| GTP-binding protein YchF [Streptococcus oralis SK100]
gi|400186945|gb|EJO21150.1| GTP-binding protein YchF [Streptococcus sp. BS35b]
Length = 371
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|270291825|ref|ZP_06198040.1| GTP-binding protein YchF [Streptococcus sp. M143]
gi|270279353|gb|EFA25195.1| GTP-binding protein YchF [Streptococcus sp. M143]
Length = 371
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKKIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|229917469|ref|YP_002886115.1| GTP-binding protein YchF [Exiguobacterium sp. AT1b]
gi|229468898|gb|ACQ70670.1| GTP-binding protein YchF [Exiguobacterium sp. AT1b]
Length = 366
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/370 (56%), Positives = 273/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDARLDRLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I QVVRCFED +I HV G+V
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICQVVRCFEDENITHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
P D+ INLEL+ +DL+Q++KR+ +++K KAKD + E ALE ++ L +
Sbjct: 120 SPIDDITTINLELILADLEQVDKRIARVQKMVKAKDKGAV---QELEALEIVRDVLESER 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR L++ + +K LLTMKP++YVANV+E ++AD SN V V + A+ S
Sbjct: 177 PARVAELSEDQLAIVKHFQLLTMKPMLYVANVSEDEVADADSNEFVQAVRDHAATEGSKV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E++EL EER+E+L LG+ ESGL LIR+ YS LGL TYFT+GEKE +AW
Sbjct: 237 IVICARIEEEISELEPEERLEFLQDLGIEESGLDQLIRAAYSTLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AGVIHSDFE+GFIRAE V+Y+D AAG++ +E+G LRSEGK+Y+ Q+
Sbjct: 297 TFKQGMKAPQCAGVIHSDFERGFIRAEVVSYEDLSAAGNMTTVKEQGKLRSEGKEYVFQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVVTFRFNV 366
>gi|94269203|ref|ZP_01291399.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
gi|93451308|gb|EAT02188.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
Length = 364
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 274/370 (74%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G ++AN+PFCTIEPNVG+V VPD RL L+ +++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IESANYPFCTIEPNVGMVPVPDHRLDALAAMAR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V A +EFVDIAGLV GAS+GEGLGN+FL HIR+VD+I VVRCF D++IVHV+ +
Sbjct: 60 TRNKVNAKMEFVDIAGLVSGASRGEGLGNQFLGHIRQVDAIAHVVRCFTDDNIVHVDSGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D +VIN EL+ +DL+ I KR++K + K+ D SK + A LE +++ L G+
Sbjct: 120 DPLRDREVINTELILADLETIRKRIQKTANQAKSGDKTSK---QQLAILEAMEKHLDQGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ L+D R+ ++++ LL+ KP++YVANV ES++ G NP V ++ A+ Q+
Sbjct: 177 PARTLELDDGGRELLREIFLLSAKPVLYVANVLESEI--NGGNPWVAKLQEAAATEQASV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V IS +E EL+ L ++ER +LA +G++E GL LIR+ Y LLGL T+FT GEKET+AW
Sbjct: 235 VVISGAIEEELSNLETDERQAFLADMGLTEPGLNRLIRTGYQLLGLVTFFTVGEKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AG APQAAGVIHSDFE+GFIRAE ++ DD +A GS A A+EKGLLR EGK+Y+V++
Sbjct: 295 TIAAGSKAPQAAGVIHSDFERGFIRAEVISCDDLLACGSEAKAKEKGLLRLEGKEYVVKD 354
Query: 414 GDVMLFRFNV 423
GD + FRFNV
Sbjct: 355 GDCINFRFNV 364
>gi|326791428|ref|YP_004309249.1| GTP-binding protein YchF [Clostridium lentocellum DSM 5427]
gi|326542192|gb|ADZ84051.1| GTP-binding protein YchF [Clostridium lentocellum DSM 5427]
Length = 364
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/368 (54%), Positives = 268/368 (72%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + SQ
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTKAG-AESANYPFCTIEPNVGVVAVPDKRLEVLKNMYNSQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ +PA++EFVDIAGL+KGAS+GEGLGN+FLSHIREVD+I+QVVRCFED++IVHV+ VDP
Sbjct: 60 RVLPAAIEFVDIAGLIKGASKGEGLGNQFLSHIREVDAIVQVVRCFEDDNIVHVDKTVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL F+D++ +E+R+ K K D K AE A L++I L GK AR
Sbjct: 120 IRDIETINLELAFADMEVLERRIAKSAKVAKTD---KTIAAEVAILQEIYSTLESGKAAR 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
++ D ++D+ I L L+T KP++Y AN++E DL N +V V + +S S
Sbjct: 177 TLLGEDADKDAFIGSLGLITAKPMLYAANISEEDLIGDVENDYVKRVKDFSSAEGSETFV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A +E EL+EL EE+ +L LG+ +G L+ ++Y LLGL +Y T+G +E +AWTI
Sbjct: 237 ICASIEQELSELDDEEKQVFLQDLGLESTGFDRLVAASYKLLGLISYLTAGPQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G AP AAG IHSDFE+GFIRAE V +DD VA GS AA+EKGL+R EGK+Y+VQ+GD
Sbjct: 297 TVGTKAPGAAGKIHSDFERGFIRAEIVNFDDLVACGSYTAAKEKGLVRLEGKEYVVQDGD 356
Query: 416 VMLFRFNV 423
++LFRFNV
Sbjct: 357 IILFRFNV 364
>gi|171915805|ref|ZP_02931275.1| translation-associated GTPase [Verrucomicrobium spinosum DSM 4136]
Length = 371
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/372 (57%), Positives = 268/372 (72%), Gaps = 7/372 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LRAGIVGLPNVGKSTLFNAV KA+AAN+PFCTIEPN G+V VPD RL LS +S SQ
Sbjct: 2 LRAGIVGLPNVGKSTLFNAVTRTRKAEAANYPFCTIEPNQGVVVVPDERLEALSKISGSQ 61
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGASQGEGLGN+FLSHIREVD+I+ VVRCFE +DI HV+G VDP
Sbjct: 62 KLIPAAIEFVDIAGLVKGASQGEGLGNQFLSHIREVDAIVHVVRCFESSDIHHVDGNVDP 121
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++VIN EL+ +D+D + KR + +K + +K AE A EK+ L GKPA
Sbjct: 122 VRDIEVINTELILADMDSVAKRKSRSEKDAKRG--NKEAQAEFALCEKLVPHLDAGKPAV 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA----DPGSNPHVNEVMNL-ASDLQS 291
++ L D E +K LL+ KP IY NV+ES+LA +P +P V++V + +
Sbjct: 180 TLELGDEEAKLLKSFFLLSGKPCIYACNVSESELAAASNEPDKHPLVSKVREYVSHAHAA 239
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V +SA +E+EL +L EE YL LGV +SG+ LI+S +SLLGL+TY T+GEKET+
Sbjct: 240 SAVVVSAAIESELIDLSDEEAAAYLTDLGVKDSGVSRLIKSVFSLLGLQTYLTTGEKETR 299
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI GM APQAAGVIHSDFE+GFI AE VA+ D GS A REKG LR EGK+Y++
Sbjct: 300 AWTIVKGMKAPQAAGVIHSDFERGFIAAEIVAFTDLSELGSYAKCREKGKLRIEGKEYVM 359
Query: 412 QEGDVMLFRFNV 423
++GDV+ +RFNV
Sbjct: 360 KDGDVVEWRFNV 371
>gi|293364519|ref|ZP_06611244.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
oralis ATCC 35037]
gi|307702809|ref|ZP_07639759.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
oralis ATCC 35037]
gi|406577874|ref|ZP_11053455.1| GTP-binding protein YchF [Streptococcus sp. GMD6S]
gi|419778216|ref|ZP_14304111.1| GTP-binding protein YchF [Streptococcus oralis SK10]
gi|291317027|gb|EFE57455.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
oralis ATCC 35037]
gi|307623665|gb|EFO02652.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
oralis ATCC 35037]
gi|383187434|gb|EIC79885.1| GTP-binding protein YchF [Streptococcus oralis SK10]
gi|404459103|gb|EKA05475.1| GTP-binding protein YchF [Streptococcus sp. GMD6S]
Length = 371
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIEYVKKIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|431930972|ref|YP_007244018.1| GTP-binding protein YchF [Thioflavicoccus mobilis 8321]
gi|431829275|gb|AGA90388.1| GTP-binding protein YchF [Thioflavicoccus mobilis 8321]
Length = 363
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+VA+PDPRL V++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTQATIA-AENYPFCTIDPNVGVVALPDPRLDVIAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +++FVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED+D+VHV+G+V
Sbjct: 60 PQKVIPTTMQFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDDVVHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++VIN EL +DL+ +EK +++ + + L KA LE++++ L G P
Sbjct: 120 DPVGDIEVINTELALADLESVEKALDRAVRAAKTGDKRVL--GRKALLERVREQLDRGLP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L+D R+ ++ L LLT KP +YVANVAE D NP + V LA+D + V
Sbjct: 178 VRAMGLDDEAREELRDLFLLTAKPTMYVANVAEDGFTD---NPLLGAVEALAADEGAEVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAEL L ER ++LA LG+SE GL ++R+ Y LLGL TYFT G KE +AWT
Sbjct: 235 PVCAAIEAELVALEEAERADFLAELGLSEPGLNRVVRAGYRLLGLETYFTVGPKEARAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I APQAAGVIHSDFE+GFIRAE + Y+DFVA A+E+G LRSEGKDY+V++G
Sbjct: 295 IPRSAKAPQAAGVIHSDFERGFIRAEVIGYEDFVACRGEQGAKEQGKLRSEGKDYVVRDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVIHFRFNV 363
>gi|226226614|ref|YP_002760720.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
gi|226089805|dbj|BAH38250.1| GTP-binding protein [Gemmatimonas aurantiaca T-27]
Length = 366
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 270/370 (72%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
LR GIVGLPNVGKSTLFNA+ + KA+AAN+PFCT+EPNVG+V VPD RL L+ + + +
Sbjct: 2 LRLGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTVEPNVGMVEVPDARLTRLAEIVQPK 60
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VPA V+FVDIAGLVKGASQGEGLGNKFL +IRE D+I+ V+RCF D+D+ HV G+ DP
Sbjct: 61 RTVPAVVQFVDIAGLVKGASQGEGLGNKFLQNIRETDAIVHVIRCFADDDVTHVMGQPDP 120
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D ++I LEL SDL +EKR++K+K+ KA D ++ AE ALE AL +GKP
Sbjct: 121 ARDKEIIELELALSDLATVEKRLDKVKRAAKAADKEAL---AELPALEAANAALSEGKPL 177
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNL--ASDLQSGR 293
L+ + + LL+ KP++Y ANV +++L+ P++ + AS +
Sbjct: 178 WRAGLDADALAKLSGMQLLSAKPVLYAANVTDAELSGE-EGPYLKALRAAVAASGEHAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V SA++EAEL EL +EERVE+LASLG+ +GL LIR+ Y+LLGL TYFT+GE+E +AW
Sbjct: 237 VPFSAKIEAELAELSTEERVEFLASLGIETAGLDRLIRAGYTLLGLETYFTAGEQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAP AAGVIH+DFEKGFIRAETVA++DF G AREKG +RSEGK+Y+VQ+
Sbjct: 297 TIHRGDTAPVAAGVIHTDFEKGFIRAETVAFNDFSTLGGWKPAREKGAVRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVLLFRFNV 366
>gi|420154842|ref|ZP_14661716.1| GTP-binding protein YchF [Clostridium sp. MSTE9]
gi|394760125|gb|EJF42749.1| GTP-binding protein YchF [Clostridium sp. MSTE9]
Length = 367
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 197/368 (53%), Positives = 274/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ N AQ+AN+PFCTIEPNVG+VAVPD RL L+ + +
Sbjct: 4 MKLGIVGLPNVGKSTLFNAIT-NAGAQSANYPFCTIEPNVGVVAVPDKRLDKLAEMYHPE 62
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ VVRCFED+DI+HV+G VDP
Sbjct: 63 KYTPATIEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVVRCFEDDDIIHVDGSVDP 122
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
DV+ INLEL+ SD++ +++R++K +K D + + E E+++ L G AR
Sbjct: 123 ARDVETINLELILSDMEVLDRRLDKTRKMLKADKKYQ---TECEFFERVRAELDAGHTAR 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRVT 295
SV + E + + + LLT K +IY AN++++D +NP+ + LA +G +
Sbjct: 180 SVECTEEEAELLATVSLLTNKLVIYAANMSDADFKGGVENNPYFAVIEKLARQENAGVLP 239
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I A+VEAE++ + EE+ +L +G+SESGL LIR Y+LLGL +Y T+G +E +AWTI
Sbjct: 240 ICAEVEAEISGMEPEEKQMFLEDMGLSESGLDRLIRECYTLLGLISYLTAGPQEVRAWTI 299
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFE+GFIRAE VAYDD +A G++AAA+EKGL+RSEGK+Y++++GD
Sbjct: 300 KEGTKAPQAAGKIHTDFERGFIRAEVVAYDDLMACGTMAAAKEKGLVRSEGKEYVMKDGD 359
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 360 VVLFRFNV 367
>gi|238854401|ref|ZP_04644743.1| GTP-binding protein YchF [Lactobacillus jensenii 269-3]
gi|260665094|ref|ZP_05865944.1| translation-associated GTPase [Lactobacillus jensenii SJ-7A-US]
gi|238833023|gb|EEQ25318.1| GTP-binding protein YchF [Lactobacillus jensenii 269-3]
gi|260561148|gb|EEX27122.1| translation-associated GTPase [Lactobacillus jensenii SJ-7A-US]
Length = 366
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 265/372 (71%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPDPRL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDPRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V GKV
Sbjct: 60 AKKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP+ D++ INLEL +DLD + +R+ EKL KG KD++++L A LEKI+ L +
Sbjct: 120 DPEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAEL-----AVLEKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS+ D E+ +K L LLT KP+IYVAN+AE +ADP S+ + V A +
Sbjct: 175 GKAVRSIDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G + ISA E E+ L +E+ E+L + GV+ESGL LI++ Y LLGLRT+FT+G ET+
Sbjct: 235 GAIAISAATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AGVIHSDFE+GFIRAE V++DD S+ +E G LR EGKDY+V
Sbjct: 295 AWTFHEGMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAGRLRLEGKDYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|332523762|ref|ZP_08400014.1| GTP-binding protein YchF [Streptococcus porcinus str. Jelinkova
176]
gi|332315026|gb|EGJ28011.1| GTP-binding protein YchF [Streptococcus porcinus str. Jelinkova
176]
Length = 371
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLNKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DLD I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPMADIDTINLELILADLDSINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E +K L LLT KP++YVANV E +ADP +V ++ A
Sbjct: 179 DGKSARTIDFTDEEEKVVKGLFLLTTKPVLYVANVDEDRVADPDDIDYVKQIRAFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL +++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDDDKAEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|225569225|ref|ZP_03778250.1| hypothetical protein CLOHYLEM_05307 [Clostridium hylemonae DSM
15053]
gi|225162024|gb|EEG74643.1| hypothetical protein CLOHYLEM_05307 [Clostridium hylemonae DSM
15053]
Length = 366
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 277/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL+VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDERLNVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDGNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K A++ ++ K E A LEKI+ L + + A+
Sbjct: 120 LRDIETINLELIFSDLEILERRISKTAK-VARNDKTAAK--ELALLEKIKAHLEENRLAK 176
Query: 237 SV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
+ T ++ E + +K LLT KP+IY ANVAE DLAD G+ N V V AS S
Sbjct: 177 TFDKTEDEEEEEWLKSYNLLTYKPVIYAANVAEDDLADDGAENAGVQAVREYASKEASEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ AQ+E E+ EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AW
Sbjct: 237 FVVCAQIEQEIAELDDEEKKMFLEELGLEESGLEKLIKASYRLLGLISYLTAGEPEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAG IH+DFE+GFIRAE V+YDD + GS AA+EKGL+R EGK+Y+V++
Sbjct: 297 TITEGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMECGSHGAAKEKGLVRLEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 357 GDIMLFRFNV 366
>gi|197302737|ref|ZP_03167790.1| hypothetical protein RUMLAC_01466 [Ruminococcus lactaris ATCC
29176]
gi|197298135|gb|EDY32682.1| putative GTP-dependent nucleic acid-binding protein EngD
[Ruminococcus lactaris ATCC 29176]
Length = 365
Score = 407 bits (1046), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+ +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENTNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K D K E L++++ L D K A+
Sbjct: 120 LRDIETINLELIFSDLEVLERRIAKTVKLSRND---KTAAKELDLLQRLKAHLEDNKMAK 176
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S T +D E+ + + LLT KP+I+ ANV+E DLAD G SN V V A +
Sbjct: 177 SFTTDDEDEQAWLAEYNLLTAKPVIFAANVSEDDLADDGASNEGVQAVREYAKEEDCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E+++L +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AWT
Sbjct: 237 VVCAEIEEEISQLDEDEKKMFLDDLGLEESGLEKLIKASYHLLGLISYLTAGEPEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFIRAE V+YDD +A GS AA+EKGL+R EGKDY+VQ+G
Sbjct: 297 IKRGTKAPQAAGKIHTDFERGFIRAEVVSYDDLIACGSHTAAKEKGLIRLEGKDYVVQDG 356
Query: 415 DVMLFRFNV 423
D+MLFRFNV
Sbjct: 357 DIMLFRFNV 365
>gi|365859125|ref|ZP_09399003.1| GTP-binding protein YchF [Acetobacteraceae bacterium AT-5844]
gi|363713024|gb|EHL96683.1| GTP-binding protein YchF [Acetobacteraceae bacterium AT-5844]
Length = 364
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 263/370 (71%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPNVG VAVPD RL ++ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTQTASAQAANYPFCTIEPNVGRVAVPDARLQTIAKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K +P S+EFVDIAGLV+GAS+GEGLGN+FL++IRE D+I+ V+RCFED D+ HV G V
Sbjct: 61 SAKIIPTSLEFVDIAGLVRGASKGEGLGNQFLANIRETDAIVHVLRCFEDGDVTHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D D+I EL+ +D+D +EKR L K+ + D ++ A+ A +E I AL DGK
Sbjct: 121 DPLRDADIIETELMLADMDSLEKRSVNLAKRARGGDKEAS---AQMALIEPILAALRDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ + E + +++L LLT KP++YV NV E A+ N H +V A +
Sbjct: 178 PART-AIPKGEEEGVRRLQLLTSKPVLYVCNVEEGSAAE--GNAHSAKVFERAKAEGAKA 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE++++ +R E+L LG+S+SGL +I + Y LLGL TYFT G KE +AW
Sbjct: 235 VVVSAAIEAEISQMDEADRGEFLEGLGLSDSGLDRVIAAGYGLLGLITYFTVGPKEARAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI GM APQAAGVIH DFE+GFI AET+AYDD+VA G AA+E G R EGK+Y+V++
Sbjct: 295 TIIKGMKAPQAAGVIHGDFERGFIAAETIAYDDYVALGGEQAAKEAGKARVEGKEYVVKD 354
Query: 414 GDVMLFRFNV 423
GD+MLFRFNV
Sbjct: 355 GDIMLFRFNV 364
>gi|28199875|ref|NP_780189.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
Temecula1]
gi|182682627|ref|YP_001830787.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
M23]
gi|28057996|gb|AAO29838.1| GTP-binding protein [Xylella fastidiosa Temecula1]
gi|182632737|gb|ACB93513.1| GTP-binding protein YchF [Xylella fastidiosa M23]
Length = 363
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 273/372 (73%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V+VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVSVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE +I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGEIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D+++I+ EL+ +DLD +EK R+ + KG ++ ++ K+ LE++Q AL +
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRIMRAAKGGGGEAIAR-----KSVLERLQVALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + AS +
Sbjct: 175 GKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRASSDNA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE +
Sbjct: 232 QLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G +R EGK+Y V
Sbjct: 292 AWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAGRMRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FRFNV
Sbjct: 352 QEGDVLHFRFNV 363
>gi|429727315|ref|ZP_19262089.1| GTP-binding protein YchF [Peptostreptococcus anaerobius VPI 4330]
gi|429152767|gb|EKX95577.1| GTP-binding protein YchF [Peptostreptococcus anaerobius VPI 4330]
Length = 365
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 281/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+VL L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDQRLNVLKDLYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+++VHV+G ++
Sbjct: 60 KIVQTAIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSNVVHVDGSINS 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K K D K E L+ +++ L +GK R
Sbjct: 120 LRDIETINLELIFSDMEILDRRITKTTKALKAD---KTLQGELDILKNLKETLEEGKSIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
++ L++ E + L LL+ KP+IYVANV+E DLA+ G+ N V V A+ S V
Sbjct: 177 TMDLSEDEWKFVNGLDLLSSKPVIYVANVSEDDLANDGADNQMVAAVREFAATENSEVVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+EAE++EL + EE++E+L +LG+ +SGL LI+S+Y LLGL ++ T+G +E +AWT
Sbjct: 237 ICAQIEAEISELETDEEKLEFLETLGLEQSGLDKLIKSSYHLLGLISFLTAGVQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+A G IHSD E+GFI+AET+AY+D + G++AAA+EKGL+R EGK+YIV++G
Sbjct: 297 IRNGAKAPEAGGKIHSDIERGFIKAETIAYEDLIEHGTMAAAKEKGLVRLEGKEYIVKDG 356
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 357 DVILFKFNV 365
>gi|407798251|ref|ZP_11145159.1| GTP-binding protein YchF [Oceaniovalibus guishaninsula JLT2003]
gi|407059687|gb|EKE45615.1| GTP-binding protein YchF [Oceaniovalibus guishaninsula JLT2003]
Length = 365
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/373 (55%), Positives = 265/373 (71%), Gaps = 14/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDRLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ VP + FVDIAGLVKGAS+GEGLGN+FL++IRE D+I V+RCFED+DI HV+G+V
Sbjct: 61 SKQVVPTRMTFVDIAGLVKGASRGEGLGNQFLANIRECDAIAHVLRCFEDDDITHVDGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM----EKLKKG-KAKDSQSKLKDAEKAALEKIQQAL 229
DP +D I EL+ +DL+ +E+R+ K++ G K Q +L A +AALE+
Sbjct: 121 DPVADAQTIETELMLADLESVERRLTNIVRKVRGGDKEAVQQERLLTAAQAALEQ----- 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
G+PARSV ++D + + + L LLT KPI+YV NV+E D A N V +A
Sbjct: 176 --GRPARSVPVDDEDGKAWRMLQLLTAKPILYVCNVSEDDAAT--GNALTERVRQMAVAE 231
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA++E E+ +LP++E E+LA +G+ E GL LIR+ Y+LLGL+TYFT G KE
Sbjct: 232 GAAEVVISARIEEEIAQLPADEAAEFLAEMGLEEPGLDRLIRAGYALLGLQTYFTVGPKE 291
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI AG APQAAGVIH DFE+GFIR+ET+AYDDFVA G A A+E G +R EGK Y
Sbjct: 292 ARAWTIPAGTRAPQAAGVIHGDFERGFIRSETIAYDDFVALGGEAGAKEAGKMRVEGKGY 351
Query: 410 IVQEGDVMLFRFN 422
V++GDV+ F FN
Sbjct: 352 EVKDGDVLHFLFN 364
>gi|349687299|ref|ZP_08898441.1| GTP-binding protein YchF [Gluconacetobacter oboediens 174Bp2]
Length = 364
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 267/370 (72%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETASAQAANYPFCTIEPNVGRVAVPDARLAELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKILPTSLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D ++I EL+ +DLD +EKR+ L KK + D ++ A+ +E + +AL +G+
Sbjct: 121 DPIRDAEIIETELMLADLDSLEKRIVALQKKARGNDREAA---AQVELMEPLIEALREGR 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR + + + +++++L L+T KP++YV NV E A N V A + +
Sbjct: 178 PARK-AIPEGQEEAVRRLQLMTTKPVLYVCNVDEGSAAT--GNEFSERVRARAEEEGAAM 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE+++L +E+RVE+L LG+ +SGL +I + Y LLGL TYFT G KET+AW
Sbjct: 235 VVVSAAIEAEVSQLGAEDRVEFLEGLGLKDSGLDRVIAAGYRLLGLNTYFTVGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAA VIH+DFE+GFI ET+AYDD++A A ARE G LR EG+DY+VQ+
Sbjct: 295 TITEGTKAPQAAAVIHNDFERGFIACETIAYDDYIACNGEAGAREAGKLRIEGRDYVVQD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVLLFRFNV 364
>gi|350572069|ref|ZP_08940378.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
wadsworthii 9715]
gi|349790657|gb|EGZ44560.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
wadsworthii 9715]
Length = 363
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 269/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K EK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAITR----EGKRAKSGDKDAQKLVTLCEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E ++ L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 176 KPVRSFGLDAEELAMLRPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL EE+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAALESEIAELEDEEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV G A A+E G +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVTLGGEAKAKEAGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|322392422|ref|ZP_08065882.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
peroris ATCC 700780]
gi|321144414|gb|EFX39815.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
peroris ATCC 700780]
Length = 371
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKCGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|422857307|ref|ZP_16903957.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1057]
gi|422861109|ref|ZP_16907751.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK330]
gi|327463838|gb|EGF10154.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1057]
gi|327467734|gb|EGF13228.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK330]
Length = 371
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVIISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|76788043|ref|YP_328733.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae A909]
gi|77405626|ref|ZP_00782715.1| GTP-binding protein YchF [Streptococcus agalactiae H36B]
gi|77407685|ref|ZP_00784440.1| GTP-binding protein YchF [Streptococcus agalactiae COH1]
gi|77411310|ref|ZP_00787659.1| GTP-binding protein YchF [Streptococcus agalactiae CJB111]
gi|339300347|ref|ZP_08649503.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae ATCC 13813]
gi|406708529|ref|YP_006763255.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae GD201008-001]
gi|410593716|ref|YP_006950443.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
agalactiae SA20-06]
gi|417006561|ref|ZP_11945131.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae FSL S3-026]
gi|421147717|ref|ZP_15607398.1| GTP-binding protein YchF [Streptococcus agalactiae GB00112]
gi|421532764|ref|ZP_15979112.1| GTP-binding protein YchF [Streptococcus agalactiae STIR-CD-17]
gi|424048444|ref|ZP_17785995.1| GTP-binding protein YchF [Streptococcus agalactiae ZQ0910]
gi|76563100|gb|ABA45684.1| GTP-binding protein YchF [Streptococcus agalactiae A909]
gi|77162646|gb|EAO73608.1| GTP-binding protein YchF [Streptococcus agalactiae CJB111]
gi|77173684|gb|EAO76798.1| GTP-binding protein YchF [Streptococcus agalactiae COH1]
gi|77175770|gb|EAO78550.1| GTP-binding protein YchF [Streptococcus agalactiae H36B]
gi|319746179|gb|EFV98449.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae ATCC 13813]
gi|341576742|gb|EGS27153.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae FSL S3-026]
gi|389650034|gb|EIM71504.1| GTP-binding protein YchF [Streptococcus agalactiae ZQ0910]
gi|401685570|gb|EJS81569.1| GTP-binding protein YchF [Streptococcus agalactiae GB00112]
gi|403641941|gb|EJZ02844.1| GTP-binding protein YchF [Streptococcus agalactiae STIR-CD-17]
gi|406649414|gb|AFS44815.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae GD201008-001]
gi|410517355|gb|AFV71499.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
agalactiae SA20-06]
Length = 371
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP +VN++ A
Sbjct: 179 DGKSARTIEFTEEEAKVVKGLFLLTTKPVLYVANVDEDKVADPDDIDYVNQIRAFAETES 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKLEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIQYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|34499510|ref|NP_903725.1| GTP-dependent nucleic acid-binding protein EngD [Chromobacterium
violaceum ATCC 12472]
gi|34105360|gb|AAQ61715.1| conserved hypothetical protein [Chromobacterium violaceum ATCC
12472]
Length = 363
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/370 (56%), Positives = 271/370 (73%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVEVPDHRLGELAKIIN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D +IVHV GKV
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D++ I EL +DL +EK + + KK KA D ++ A A LEK+ L +GK
Sbjct: 120 DPIADIETILTELALADLSAVEKAIAREGKKAKAGDKDAR---ALIAILEKLVPHLNEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ L+D ++ IK LCLLT+KP +YVANVAE +D NP + +V A+ +
Sbjct: 177 PARSLGLSDEDKALIKPLCLLTIKPAMYVANVAEDGFSD---NPLLAKVEEYAAKEGAPV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E+E+ EL ++ E+L +LG+ E GL LIR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VALCAAIESEIAELEDADKAEFLETLGLEEPGLDRLIRAGYKLLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAGVIH+DFE+GFIRA+T+++ DFV G A A+E G +R+EGKDY+VQ+
Sbjct: 294 TIHVGDTAPQAAGVIHTDFERGFIRAQTISFQDFVTLGGEAKAKEAGKMRAEGKDYVVQD 353
Query: 414 GDVMLFRFNV 423
GDVM F FNV
Sbjct: 354 GDVMNFLFNV 363
>gi|435855257|ref|YP_007316576.1| GTP-binding protein YchF [Halobacteroides halobius DSM 5150]
gi|433671668|gb|AGB42483.1| GTP-binding protein YchF [Halobacteroides halobius DSM 5150]
Length = 365
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 267/369 (72%), Gaps = 4/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ E G A + N+PFCTI+PNVGIV VPD RL L+ +
Sbjct: 1 MGMKCGIVGLPNVGKSTLFNAITEAG-ADSENYPFCTIDPNVGIVDVPDKRLDNLTEIID 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGNKFL +IREVD+I+ VVRCF+++DI HV G V
Sbjct: 60 PQETIPTAIEFVDIAGLVKGASKGEGLGNKFLGNIREVDAIVHVVRCFQNDDITHVEGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+++I +EL+ +DL+ + + EK +K + K+ + LEK++ L +G P
Sbjct: 120 DPLRDIEIIEMELILADLESVTNKKEKTEK--MLKTGDKMYKEQFEVLEKVEAVLEEGNP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR + L+D E+ IK L LLT+KP++Y ANV E D+ S P V ++ N A+ + V
Sbjct: 178 ARMLDLSDKEKKLIKDLNLLTLKPVLYAANVGEDDIT-KDSIPLVEKIENKAAQEDAEVV 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+SA VEAE+ EL E+ +L LG+ ESGL LI++ Y LLGL T+FT+GEKE +AWT
Sbjct: 237 TVSAGVEAEIAELEGAEKELFLEELGIEESGLDKLIKAGYKLLGLITFFTAGEKEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ G TAP+AAGVIHSD E+GFIRAE ++Y++ VA GS A+AR G LR EGKDYI+++G
Sbjct: 297 VNKGATAPEAAGVIHSDMERGFIRAEVISYEELVAVGSFASARNAGTLRLEGKDYIIKDG 356
Query: 415 DVMLFRFNV 423
DV F+FNV
Sbjct: 357 DVCYFKFNV 365
>gi|254429140|ref|ZP_05042847.1| GTP-binding protein YchF [Alcanivorax sp. DG881]
gi|196195309|gb|EDX90268.1| GTP-binding protein YchF [Alcanivorax sp. DG881]
Length = 363
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 262/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL LS +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLSAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +++HV+GKV
Sbjct: 60 PERVMPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVIHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL +
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHLRATKAAKGQDKDAKGLL-----PVLDKVLPALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G PARSV L D ER +IK L LLT+KP +Y+ANV E D N ++ V LA S
Sbjct: 175 GDPARSVELTDDERKAIKSLNLLTLKPTMYIANVDEGGFED---NALLDAVRELAEKENS 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 232 SVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE YDD++ A+E G R EGK+YIV
Sbjct: 292 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVTGYDDYIDNNGEQGAKEAGKWRLEGKEYIV 351
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 352 KDGDVVHFRFNV 363
>gi|296315350|ref|ZP_06865291.1| GTP-binding protein YchF [Neisseria polysaccharea ATCC 43768]
gi|296837700|gb|EFH21638.1| GTP-binding protein YchF [Neisseria polysaccharea ATCC 43768]
Length = 363
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERSMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|225574506|ref|ZP_03783116.1| hypothetical protein RUMHYD_02583 [Blautia hydrogenotrophica DSM
10507]
gi|225038293|gb|EEG48539.1| GTP-binding protein YchF [Blautia hydrogenotrophica DSM 10507]
Length = 365
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL +L +S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLRLLGDFYQSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G V P
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVAP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+RM K K D ++ E L+K++ L +GK A
Sbjct: 120 LRDIETINLELIFSDLEILERRMAKTTKVARNDKEAA---KELEFLKKVKAHLEEGKMAI 176
Query: 237 SVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ L + E I LLT KP+IY ANV E DLAD G S +V EV N A + S
Sbjct: 177 TMKLETEDELAYIGSYNLLTYKPVIYAANVCEDDLADDGHSCAYVQEVRNYAQEQNSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL ++ TSGE ET+AWT
Sbjct: 237 VICAQIEQEIAELDDDEKKMFLEDLGLEESGLEKLIKASYRLLGLISFLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFI+AE V Y D + GS A AREKGL+R EGK+Y+V++G
Sbjct: 297 IKVGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDCGSYAGAREKGLVRMEGKEYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|406588437|ref|ZP_11063046.1| GTP-binding protein YchF [Streptococcus sp. GMD1S]
gi|419814391|ref|ZP_14339182.1| GTP-binding protein YchF [Streptococcus sp. GMD2S]
gi|404468055|gb|EKA13088.1| GTP-binding protein YchF [Streptococcus sp. GMD1S]
gi|404471901|gb|EKA16360.1| GTP-binding protein YchF [Streptococcus sp. GMD2S]
Length = 371
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQ AG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQVAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|417937047|ref|ZP_12580353.1| GTP-binding protein YchF [Streptococcus infantis X]
gi|343399489|gb|EGV12011.1| GTP-binding protein YchF [Streptococcus infantis X]
Length = 371
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPDSIDYVKQIREFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|399924190|ref|ZP_10781548.1| GTP-binding protein YchF [Peptoniphilus rhinitidis 1-13]
Length = 362
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/368 (56%), Positives = 279/368 (75%), Gaps = 7/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A+AAN+PF TIEPNVG+V VPD RL VL+ LS S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNALTSAG-AEAANYPFATIEPNVGVVNVPDERLDVLAKLSNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +I+HV+G +DP
Sbjct: 60 KVVHTNIEFYDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDENIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+FSDL+Q+E R K +KK +A+ S +K +D LEKI+ AL +GK A
Sbjct: 120 IRDIENINLELIFSDLEQVENRYGKVVKKSRAEKSLAKERD----LLEKIKTALEEGKSA 175
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295
R V +++ E IK LL+ KP+IYV NVAE +L++ N +V +V A + V
Sbjct: 176 RKVEIDEEEEKIIKNYALLSAKPVIYVCNVAEEELSND-DNEYVKKVREYAENAGDEVVV 234
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++EAE+ L +E+ +L LG+ SGL LI+S+Y LLGL ++ T+GE ET+AWTI
Sbjct: 235 ISAEIEAEIASLDEDEKELFLEELGLDSSGLDKLIKSSYKLLGLISFLTTGEMETRAWTI 294
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G AP AAG IH+D E+GFI+A+TV+Y D V +GS+AAAREKGL+RSEGKDYIV++GD
Sbjct: 295 KRGSKAPTAAGKIHTDMERGFIKADTVSYKDLVDSGSVAAAREKGLIRSEGKDYIVEDGD 354
Query: 416 VMLFRFNV 423
V++F+FNV
Sbjct: 355 VIVFKFNV 362
>gi|322388483|ref|ZP_08062086.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
infantis ATCC 700779]
gi|419843769|ref|ZP_14367075.1| GTP-binding protein YchF [Streptococcus infantis ATCC 700779]
gi|321140796|gb|EFX36298.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
infantis ATCC 700779]
gi|385702468|gb|EIG39612.1| GTP-binding protein YchF [Streptococcus infantis ATCC 700779]
Length = 371
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKKIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|253681986|ref|ZP_04862783.1| GTP-binding protein YchF [Clostridium botulinum D str. 1873]
gi|253561698|gb|EES91150.1| GTP-binding protein YchF [Clostridium botulinum D str. 1873]
Length = 365
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 272/370 (73%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDGKP 234
D++ INLEL+ +DL+ IE+R EK + ++S +K+A E LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKIELPILEKVKAHLEANKP 175
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
RS+ L E++ +K L+T KPI+YV+N+ E DL N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNIENEFVKKVKEYAKEEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E EL+ L EER E L+ G++E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLTEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AAG IH+D E+GFIRAE V+Y+D V GS AAA+EKGL R EGKDY++Q+
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYNDLVECGSEAAAKEKGLFRLEGKDYVMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVNFRFNV 365
>gi|358053799|ref|ZP_09147456.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
simiae CCM 7213]
gi|357256785|gb|EHJ07110.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
simiae CCM 7213]
Length = 365
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 269/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDTRLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L KI++AL +GK
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIQKMARQKDKTAEM---EVRILTKIKEALENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A+ +S
Sbjct: 177 PVRSLEFNDEDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAAKEESEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIAMLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G R EGKDYI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGENGAKEAGRQRLEGKDYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|157151596|ref|YP_001451367.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
gordonii str. Challis substr. CH1]
gi|157076390|gb|ABV11073.1| GTP-binding protein [Streptococcus gordonii str. Challis substr.
CH1]
Length = 371
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTIDFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLLHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|385337426|ref|YP_005891299.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis WUE 2594]
gi|433476262|ref|ZP_20433597.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
88050]
gi|433516331|ref|ZP_20473094.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2004090]
gi|433518274|ref|ZP_20475014.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
96023]
gi|433524770|ref|ZP_20481425.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97020]
gi|433527609|ref|ZP_20484221.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3652]
gi|433531054|ref|ZP_20487636.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3642]
gi|433531996|ref|ZP_20488563.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2007056]
gi|433535241|ref|ZP_20491773.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2001212]
gi|319409840|emb|CBY90149.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis WUE 2594]
gi|432208117|gb|ELK64096.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
88050]
gi|432251452|gb|ELL06819.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2004090]
gi|432252012|gb|ELL07372.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
96023]
gi|432257821|gb|ELL13114.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97020]
gi|432264636|gb|ELL19836.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3642]
gi|432266509|gb|ELL21692.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM3652]
gi|432268641|gb|ELL23808.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2007056]
gi|432269873|gb|ELL25021.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2001212]
Length = 363
Score = 406 bits (1044), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|255282557|ref|ZP_05347112.1| GTP-binding protein YchF [Bryantella formatexigens DSM 14469]
gi|255266850|gb|EET60055.1| GTP-binding protein YchF [Marvinbryantia formatexigens DSM 14469]
Length = 365
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 279/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL L+ L S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLQKLAALYNSV 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCF+D +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFDDPNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K+ +G A++ +++ K+ E L ++++ L G+ A
Sbjct: 120 VRDIETINLELIFSDIEILERRIAKVSRG-ARNDKAQAKELE--LLNRLKEHLEQGRLAI 176
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
+ +D E++ + LLT KP+I+ ANVAE DLAD G SN +V EV A + S
Sbjct: 177 TFKTDDEDEQEWLSGYNLLTGKPVIFAANVAEDDLADDGASNKYVQEVREFAKEQGSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +E+ +L LG+++SGL LI+++Y +LGL +Y TSGE ET+AWT
Sbjct: 237 VICAQIEQEIAELEEDEKKMFLEDLGIAQSGLEKLIQASYHILGLISYLTSGEPETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V Y D + GS+AAA+EKGL+ EGKDY+V++G
Sbjct: 297 IKKGTKAPQAAGKIHSDFERGFIRAEVVNYQDLLDCGSIAAAKEKGLVGLEGKDYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|335029785|ref|ZP_08523289.1| GTP-binding protein YchF [Streptococcus infantis SK1076]
gi|334268193|gb|EGL86637.1| GTP-binding protein YchF [Streptococcus infantis SK1076]
Length = 371
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + DP S +V ++ A
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDPESIDYVKQIREFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|406888353|gb|EKD34863.1| hypothetical protein ACD_75C02158G0002 [uncultured bacterium]
Length = 366
Score = 406 bits (1044), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/368 (56%), Positives = 272/368 (73%), Gaps = 11/368 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+A+N+PFCTIEPN+GIV VPD RL VL+ L S
Sbjct: 1 MKIGIVGLPNVGKSTLFNALTKAG-AEASNYPFCTIEPNIGIVRVPDERLDVLAKLGTSN 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +P ++EFVDIAGLVKGAS+GEGLGN FL+HIR V++I VVRCF+D++I HV+G +DP
Sbjct: 60 KIIPTTIEFVDIAGLVKGASKGEGLGNMFLAHIRSVEAIAHVVRCFDDDNITHVHGGIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
D + INLEL+ +DL+ +EKR+ EK +G+ KDS KL + L KI+ AL K
Sbjct: 120 VGDAETINLELILADLELVEKRIFAEEKKARGQDKDSIIKL-----SGLLKIKAALEAEK 174
Query: 234 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQS 291
PAR+ L+ E+ I +++ LLT K +IYVANV+E DL G+ NP+V ++ A
Sbjct: 175 PARAARLDKQEKVLIDREMQLLTGKQVIYVANVSEDDLGTEGAGNPYVQKLKAFADSHGD 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G V +SA++EAEL+E+ EE +LA LG+ ESGL L R YSLL L ++ T+G+KET+
Sbjct: 235 GLVCVSAKIEAELSEMDEEEAQVFLAELGLKESGLARLAREAYSLLDLISFLTTGQKETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI+ G APQAAGVIH+DFEK FIRAE V YDD VAAGS +AARE+G LR+EGKDY+
Sbjct: 295 AWTIKQGTRAPQAAGVIHTDFEKHFIRAEVVPYDDLVAAGSWSAARERGKLRTEGKDYVF 354
Query: 412 QEGDVMLF 419
++G+V +F
Sbjct: 355 RDGEVTVF 362
>gi|374337049|ref|YP_005093746.1| GTP-binding and nucleic acid-binding protein YchF [Streptococcus
macedonicus ACA-DC 198]
gi|372283146|emb|CCF01296.1| GTP-binding and nucleic acid-binding protein YchF [Streptococcus
macedonicus ACA-DC 198]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSIAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V + E+ +KQL LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTVDFTEEEQKIVKQLFLLTTKPVLYVANVDEDKVANPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKALFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAITMSYDDLIKYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|418196926|ref|ZP_12833394.1| GTPase family protein [Streptococcus pneumoniae GA47778]
gi|419424082|ref|ZP_13964287.1| GTPase family protein [Streptococcus pneumoniae 7533-05]
gi|419443670|ref|ZP_13983686.1| GTPase family protein [Streptococcus pneumoniae GA19923]
gi|353866490|gb|EHE46391.1| GTPase family protein [Streptococcus pneumoniae GA47778]
gi|379573675|gb|EHZ38629.1| GTPase family protein [Streptococcus pneumoniae GA19923]
gi|379621588|gb|EHZ86232.1| GTPase family protein [Streptococcus pneumoniae 7533-05]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ SDL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILSDLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|59800527|ref|YP_207239.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae FA 1090]
gi|194097672|ref|YP_002000712.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae NCCP11945]
gi|240013377|ref|ZP_04720290.1| translation-associated GTPase [Neisseria gonorrhoeae DGI18]
gi|240015820|ref|ZP_04722360.1| translation-associated GTPase [Neisseria gonorrhoeae FA6140]
gi|240120449|ref|ZP_04733411.1| translation-associated GTPase [Neisseria gonorrhoeae PID24-1]
gi|254492971|ref|ZP_05106142.1| translation-associated GTPase [Neisseria gonorrhoeae 1291]
gi|268594048|ref|ZP_06128215.1| translation-associated GTPase [Neisseria gonorrhoeae 35/02]
gi|268596097|ref|ZP_06130264.1| translation-associated GTPase [Neisseria gonorrhoeae FA19]
gi|268598223|ref|ZP_06132390.1| translation-associated GTPase [Neisseria gonorrhoeae MS11]
gi|268600569|ref|ZP_06134736.1| translation-associated GTPase [Neisseria gonorrhoeae PID18]
gi|268602887|ref|ZP_06137054.1| translation-associated GTPase [Neisseria gonorrhoeae PID1]
gi|268681351|ref|ZP_06148213.1| translation-associated GTPase [Neisseria gonorrhoeae PID332]
gi|268683521|ref|ZP_06150383.1| translation-associated GTPase [Neisseria gonorrhoeae SK-92-679]
gi|291044621|ref|ZP_06570330.1| translation-associated GTPase [Neisseria gonorrhoeae DGI2]
gi|293397740|ref|ZP_06641946.1| GTP-binding protein YchF [Neisseria gonorrhoeae F62]
gi|385334939|ref|YP_005888886.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae TCDC-NG08107]
gi|59717422|gb|AAW88827.1| putative GTP-binding protein [Neisseria gonorrhoeae FA 1090]
gi|193932962|gb|ACF28786.1| putative GTP-binding protein [Neisseria gonorrhoeae NCCP11945]
gi|226512011|gb|EEH61356.1| translation-associated GTPase [Neisseria gonorrhoeae 1291]
gi|268547437|gb|EEZ42855.1| translation-associated GTPase [Neisseria gonorrhoeae 35/02]
gi|268549885|gb|EEZ44904.1| translation-associated GTPase [Neisseria gonorrhoeae FA19]
gi|268582354|gb|EEZ47030.1| translation-associated GTPase [Neisseria gonorrhoeae MS11]
gi|268584700|gb|EEZ49376.1| translation-associated GTPase [Neisseria gonorrhoeae PID18]
gi|268587018|gb|EEZ51694.1| translation-associated GTPase [Neisseria gonorrhoeae PID1]
gi|268621635|gb|EEZ54035.1| translation-associated GTPase [Neisseria gonorrhoeae PID332]
gi|268623805|gb|EEZ56205.1| translation-associated GTPase [Neisseria gonorrhoeae SK-92-679]
gi|291011515|gb|EFE03511.1| translation-associated GTPase [Neisseria gonorrhoeae DGI2]
gi|291611686|gb|EFF40755.1| GTP-binding protein YchF [Neisseria gonorrhoeae F62]
gi|317163482|gb|ADV07023.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
gonorrhoeae TCDC-NG08107]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNRFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|227432678|ref|ZP_03914651.1| GTP-binding translation factor YchF [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351560|gb|EEJ41813.1| GTP-binding translation factor YchF [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 366
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/370 (54%), Positives = 267/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDNRLARIQEVVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ ++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIVHVVRAFDGDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ IN EL+ +DL+ ++KR K+ + K D +K AE LEKI+ L GK
Sbjct: 120 DPLDDIETINTELILADLEAVDKRYSKVARAAKGNDKNAK---AEFVVLEKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
AR++T + E+ +K L LLT KPI+YVAN+AE D+ADP + + N++ A+ +
Sbjct: 177 SARTITFTEEEQKIVKGLFLLTTKPILYVANLAEDDMADPMGSKYFNQIKEFAAIEGADV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA E E+ +LP EE+ E+L GV E+GL LIR+ Y LL LRT+FT+G KET+AW
Sbjct: 237 IGLSASEEEEIAQLPEEEKAEFLEMAGVEEAGLNKLIRAAYHLLDLRTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T AG APQAAGVIHSDFE+GFIRAET+A+ D GS+ +E G LRSEGK+Y+VQ+
Sbjct: 297 TFTAGSKAPQAAGVIHSDFERGFIRAETIAFSDLDELGSVKTVKEAGKLRSEGKEYVVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|325261907|ref|ZP_08128645.1| GTP-binding protein YchF [Clostridium sp. D5]
gi|324033361|gb|EGB94638.1| GTP-binding protein YchF [Clostridium sp. D5]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 276/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KIVPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K A++ +S K E LE+I+ L + K +
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKTVK-VARNDKSAAK--ELGLLERIKAHLEENKMGK 176
Query: 237 SV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S T +D E++ ++ LLT KP+I+ ANV E LAD G SN V V A +
Sbjct: 177 SFSTDDDDEQEWLESYNLLTRKPVIFAANVTEDVLADDGASNTGVKAVREYAEQEECEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E+ EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AWT
Sbjct: 237 VVCAQIEQEIAELDDEEKKMFLEDLGLEESGLEKLIKASYHLLGLISYLTAGEPEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V+YDD +A G+ AAA+EKGL+R EGK+Y+VQ+G
Sbjct: 297 IKRGTKAPQAAGKIHSDFERGFIRAEIVSYDDLMACGTHAAAKEKGLVRLEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
D++LFRFNV
Sbjct: 357 DIILFRFNV 365
>gi|329118941|ref|ZP_08247636.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
bacilliformis ATCC BAA-1200]
gi|327464969|gb|EGF11259.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
bacilliformis ATCC BAA-1200]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 270/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D +IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K A LE + L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVR----EGKRAKSGDKDAQKLVALLESLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ + ++ L LLT+KP +YVANVAE +NPH+ + LA+ +
Sbjct: 176 KPVRSFGLDAEQTALLRPLFLLTVKPAMYVANVAEDGF---DNNPHLARLQELAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL EE+ E+LA +G+ E GL L+R+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAAMESEIAELEDEEKAEFLAEMGLEEPGLNRLVRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|91978460|ref|YP_571119.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris BisB5]
gi|91684916|gb|ABE41218.1| conserved hypothetical protein [Rhodopseudomonas palustris BisB5]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/372 (56%), Positives = 262/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALM--- 230
P +D++ I EL+ +DLD +EKR++ L KK K D KDA K LE + +AL
Sbjct: 121 APIADIETIETELMLADLDSLEKRVDNLTKKAKGND-----KDA-KEQLELVNRALTLLR 174
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+GKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 175 EGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNSFSEQVMARAKEEG 232
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 AVAVVISAKIESEIATLSREERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKEA 292
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD+V G A AR+ G LR EGK+Y+
Sbjct: 293 RAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDGGKLRLEGKEYV 352
Query: 411 VQEGDVMLFRFN 422
V +GDVM FRFN
Sbjct: 353 VADGDVMHFRFN 364
>gi|426404604|ref|YP_007023575.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus str. Tiberius]
gi|425861272|gb|AFY02308.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus str. Tiberius]
Length = 366
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 271/370 (73%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPDPR+ ++ K
Sbjct: 1 MALQVGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTIDPNVGVVTVPDPRMDKITEFIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAG+VKGASQGEGLGN+FLSHIR+ D+I+ VVRCF+D +I+HV G V
Sbjct: 60 PQKVVPTTMEFVDIAGIVKGASQGEGLGNQFLSHIRQTDAIVHVVRCFDDPNIIHVAGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK-DAEKAALEKIQQALMDGK 233
+P D+++IN EL+ +DLD +EKR+++ +K + KLK D E A +KI++AL G
Sbjct: 120 EPIRDIEIINTELLLADLDSVEKRLQRTEKQAKNSTDKKLKLDVEVA--KKIKEALGKGL 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARSVTL++ E+ ++K++ LLT KP++Y NV ++D A G N V A++ +
Sbjct: 178 PARSVTLDEMEQVALKEMHLLTAKPVLYAMNVNDADFA-AGGNDWTKAVEARAAEENNKT 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I + +EAE+ LP EER ++L +LG E GL LIR Y+LLGL+TYFT+G E +AW
Sbjct: 237 ILICSAMEAEIALLPPEERKDFLDALGAEEPGLNRLIREAYTLLGLQTYFTAGVTEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIRA APQAAGVIH+DFE+GFI+AET +D S A ++ G R EGK+Y+V++
Sbjct: 297 TIRANTKAPQAAGVIHTDFERGFIKAETYHCEDLFKYKSEQAIKDAGKYRIEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ F+FNV
Sbjct: 357 GDVLFFKFNV 366
>gi|110833376|ref|YP_692235.1| GTP-dependent nucleic acid-binding protein EngD [Alcanivorax
borkumensis SK2]
gi|110646487|emb|CAL15963.1| GTP-binding protein YchF [Alcanivorax borkumensis SK2]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 263/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL L +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLEAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D +++HV+GKV
Sbjct: 60 PERVLPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVIHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL +
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHFRATKAAKGQDKDAKGLL-----PVLDKVLPALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G PARSV L D ER +IK L LLT+KP +Y+ANV E D N ++ V +LA S
Sbjct: 175 GDPARSVELTDDERKAIKSLNLLTLKPTMYIANVDEGGFED---NALLDAVRDLAEKENS 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 232 SVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE Y+D++A A+E G R EGK+YIV
Sbjct: 292 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVTGYEDYIANNGEQGAKEAGKWRLEGKEYIV 351
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 352 KDGDVVHFRFNV 363
>gi|421557831|ref|ZP_16003728.1| putative GTP-binding protein [Neisseria meningitidis 80179]
gi|402333550|gb|EJU68852.1| putative GTP-binding protein [Neisseria meningitidis 80179]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRTRSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|339639768|ref|ZP_08661212.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 056 str.
F0418]
gi|339453037|gb|EGP65652.1| GTP-binding protein YchF [Streptococcus sp. oral taxon 056 str.
F0418]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDERLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVGEDEVADPDNIDYVKQIRTFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|414156521|ref|ZP_11412823.1| GTP-binding protein YchF [Streptococcus sp. F0442]
gi|410870168|gb|EKS18127.1| GTP-binding protein YchF [Streptococcus sp. F0442]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|268685828|ref|ZP_06152690.1| translation-associated GTPase [Neisseria gonorrhoeae SK-93-1035]
gi|268626112|gb|EEZ58512.1| translation-associated GTPase [Neisseria gonorrhoeae SK-93-1035]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|449980312|ref|ZP_21817121.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 5SM3]
gi|450112395|ref|ZP_21863194.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM6]
gi|449177079|gb|EMB79395.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 5SM3]
gi|449222157|gb|EMC21892.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM6]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTISYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|254474875|ref|ZP_05088261.1| GTP-binding protein YchF [Ruegeria sp. R11]
gi|214029118|gb|EEB69953.1| GTP-binding protein YchF [Ruegeria sp. R11]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 262/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG V VPDPRL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTASAQAANFPFCTIEPNVGEVGVPDPRLDKLAAIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D + I EL+ +DL+ IEKR L +K K D +++ +D L Q L GK
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKEAQQQD---RLLATAQDMLESGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++ + + K L LLT KP++YV NV ES+ D N H +V ++A+ +
Sbjct: 178 PARLVEVDAEDAKAWKMLQLLTTKPVLYVCNVGESESVD--GNEHSAKVADMATAQGNAH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISAQ+E E+++L EE +L+ +G++E+GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAQIEEEISQLEPEEAEMFLSEMGLAEAGLDRLIRAGYELLKLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIH DFEKGFIRAET+AYDD++AA A+E G +R+EGK YIV++
Sbjct: 296 TIRTGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIAANGEQGAKEAGKMRAEGKSYIVKD 355
Query: 414 GDVMLFRFN 422
GDV+ F FN
Sbjct: 356 GDVLHFLFN 364
>gi|385324797|ref|YP_005879236.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 8013]
gi|385855857|ref|YP_005902370.1| GTP-binding protein EngD [Neisseria meningitidis M01-240355]
gi|416184788|ref|ZP_11613105.1| GTP-binding protein EngD [Neisseria meningitidis M13399]
gi|421555558|ref|ZP_16001488.1| putative GTP-binding protein [Neisseria meningitidis 98008]
gi|433469969|ref|ZP_20427377.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
98080]
gi|433522843|ref|ZP_20479522.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
61103]
gi|254671615|emb|CBA09307.1| conserved hypothetical protein [Neisseria meningitidis alpha153]
gi|261393184|emb|CAX50802.1| putative GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 8013]
gi|325133488|gb|EGC56151.1| GTP-binding protein EngD [Neisseria meningitidis M13399]
gi|325204798|gb|ADZ00252.1| GTP-binding protein EngD [Neisseria meningitidis M01-240355]
gi|402329795|gb|EJU65149.1| putative GTP-binding protein [Neisseria meningitidis 98008]
gi|432201562|gb|ELK57642.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
98080]
gi|432257358|gb|ELL12661.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
61103]
Length = 363
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|256851850|ref|ZP_05557238.1| translation-associated GTPase [Lactobacillus jensenii 27-2-CHN]
gi|260661889|ref|ZP_05862799.1| translation-associated GTPase [Lactobacillus jensenii 115-3-CHN]
gi|297205474|ref|ZP_06922870.1| GTP-binding protein YchF [Lactobacillus jensenii JV-V16]
gi|256615808|gb|EEU20997.1| translation-associated GTPase [Lactobacillus jensenii 27-2-CHN]
gi|260547358|gb|EEX23338.1| translation-associated GTPase [Lactobacillus jensenii 115-3-CHN]
gi|297150052|gb|EFH30349.1| GTP-binding protein YchF [Lactobacillus jensenii JV-V16]
Length = 366
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 265/372 (71%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPDPRL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDPRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V GKV
Sbjct: 60 AKKIVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIIHVVRSFDDDNITSVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP+ D++ INLEL +DLD + +R+ EKL KG KD++++L A L+KI+ L +
Sbjct: 120 DPEEDINTINLELAIADLDAVNRRIGKVEKLVKGNDKDAKAEL-----AVLQKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK RS+ D E+ +K L LLT KP+IYVAN+AE +ADP S+ + V A +
Sbjct: 175 GKAVRSIDFKDDEKKIVKGLFLLTSKPVIYVANIAEDSMADPESDKYFQIVKKHAESENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
G + ISA E E+ L +E+ E+L + GV+ESGL LI++ Y LLGLRT+FT+G ET+
Sbjct: 235 GAIAISAATEEEIAGLDDDEKQEFLEAEGVTESGLDRLIKAAYHLLGLRTFFTAGGPETR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AGVIHSDFE+GFIRAE V++DD S+ +E G LR EGKDY+V
Sbjct: 295 AWTFHEGMKAPQVAGVIHSDFERGFIRAEVVSFDDLDKYESMQKVKEAGRLRLEGKDYVV 354
Query: 412 QEGDVMLFRFNV 423
Q+GD++ FRFNV
Sbjct: 355 QDGDIIEFRFNV 366
>gi|262281638|ref|ZP_06059407.1| translation-associated GTPase [Streptococcus sp. 2_1_36FAA]
gi|262262092|gb|EEY80789.1| translation-associated GTPase [Streptococcus sp. 2_1_36FAA]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGISARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLLHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|418965951|ref|ZP_13517707.1| GTP-binding protein YchF [Streptococcus constellatus subsp.
constellatus SK53]
gi|383341202|gb|EID19468.1| GTP-binding protein YchF [Streptococcus constellatus subsp.
constellatus SK53]
Length = 371
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDVRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+RVE+L ++G+ ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRVEFLEAMGLDESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|289423068|ref|ZP_06424883.1| GTP-binding protein YchF [Peptostreptococcus anaerobius 653-L]
gi|289156399|gb|EFD05049.1| GTP-binding protein YchF [Peptostreptococcus anaerobius 653-L]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 281/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVG+V+VPD RL+VL L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGVVSVPDQRLNVLKDLYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED+++VHV+G ++
Sbjct: 60 KIVQTAIEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDSNVVHVDGSINS 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K K D K E L+ +++ L +GK R
Sbjct: 120 LRDIETINLELIFSDMEILDRRITKTTKALKAD---KTLQGELDILKNLKETLEEGKSIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGRVT 295
++ L++ E + L LL+ KP+IYVANV+E DLA+ G++ V V A+ S V
Sbjct: 177 TMDLSEDEWKFVNGLDLLSSKPVIYVANVSEDDLANDGADSQMVAAVREFAATENSEVVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+EAE++EL + EE++E+L +LG+ +SGL LI+S+Y LLGL ++ T+G +E +AWT
Sbjct: 237 ICAQIEAEISELETDEEKLEFLETLGLEQSGLDKLIKSSYHLLGLISFLTAGVQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+A G IHSD E+GFI+AET+AY+D + G++AAA+EKGL+R EGK+YIV++G
Sbjct: 297 IRNGAKAPEAGGKIHSDIERGFIKAETIAYEDLIEHGTMAAAKEKGLVRLEGKEYIVKDG 356
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 357 DVILFKFNV 365
>gi|160893902|ref|ZP_02074681.1| hypothetical protein CLOL250_01457 [Clostridium sp. L2-50]
gi|156864280|gb|EDO57711.1| GTP-binding protein YchF [Clostridium sp. L2-50]
Length = 389
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 276/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+VAVPD RL L+ + S
Sbjct: 25 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVAVPDERLDKLTEMYHSA 83
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 84 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNVIHVDGSVDP 143
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K +G D K+ E ++I+ L +GK A+
Sbjct: 144 IRDIETINLELIFSDIEVLDRRIAKTIRGARND---KMLAKELDFQQRIKAHLEEGKLAK 200
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
++ + D E+ I++ LLT KP+I+ ANV+E D+AD G SN +V +V A + S
Sbjct: 201 TLEVTDEDEQGWIEEYNLLTWKPVIFAANVSEDDVADDGASNEYVQKVKEYAKEFDSEVF 260
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E EL EL EE+ +L LGV ESGL LI+++YSLLGL +Y T+GE E++AWT
Sbjct: 261 VVCAQIEQELAELDDEEKKMFLEDLGVKESGLDKLIKASYSLLGLISYLTAGETESRAWT 320
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSDFE+GFI+AE V+Y D + G++ AA+EKGL+R EGK+Y+V++G
Sbjct: 321 IKKGTKAPGAAGKIHSDFERGFIKAEVVSYKDLMECGNMVAAKEKGLVRQEGKEYVVEDG 380
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 381 DVILFKFNV 389
>gi|429765539|ref|ZP_19297824.1| GTP-binding protein YchF [Clostridium celatum DSM 1785]
gi|429185990|gb|EKY26953.1| GTP-binding protein YchF [Clostridium celatum DSM 1785]
Length = 365
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 271/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYGTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V +VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VRCFED ++VHV G VDP
Sbjct: 60 RKVYTAVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHAVRCFEDENVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+F+DL+ +E+RMEK +K ++ D ++K AE +EK++ L KP
Sbjct: 120 IRDIETINLELIFADLEVLERRMEKGVKLARSGDKKAK---AEYEIMEKVKAHLEANKPI 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESD-LADPGSNPHVNEVMNLASDLQSGRV 294
R++ L + E +K L ++T KP++Y N++E D +A N +V V A++ SG V
Sbjct: 177 RTLELTEDEEVFVKSLFMITSKPVLYSCNISEDDMMAGNLENDYVKMVKEYAANENSGVV 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E EL+ L EE+ E L G++ESGL LIR++Y LLGL +Y T+G +E +AWT
Sbjct: 237 VVCAKLEEELSGLEDEEKAEMLEEYGLTESGLDKLIRASYKLLGLISYLTAGVQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSD E+GFIRAE VAYDD V GS AAA+EKGL R EGK+Y++++G
Sbjct: 297 IKEGTKAPAAAGKIHSDIERGFIRAEVVAYDDLVECGSEAAAKEKGLYRLEGKEYVMKDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|418403967|ref|ZP_12977442.1| GTP-binding protein YchF [Sinorhizobium meliloti CCNWSX0020]
gi|359502107|gb|EHK74694.1| GTP-binding protein YchF [Sinorhizobium meliloti CCNWSX0020]
Length = 367
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 270/375 (72%), Gaps = 14/375 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
P D D I EL+ +DLD +E+R E+ +K GK K+S ++L E A+L+ +Q+
Sbjct: 121 HPVEDADTIETELMLADLDSLERRAEQTRKRATGKDKESMAQLPIME-ASLKLLQE---- 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A +
Sbjct: 176 GKPVRTL-LSKLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMARE 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QGAETVVISAAIESEVAQLPEEEAKEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI G APQAAGVIHSDFE+GFIR+ T+AYDD++A G A+E G R EGK+
Sbjct: 293 ETRAWTIPRGTKAPQAAGVIHSDFERGFIRSNTIAYDDYIAYGGENGAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDV+ FRFN
Sbjct: 353 YVVQDGDVIHFRFNT 367
>gi|182682974|ref|YP_001834721.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae CGSP14]
gi|298501794|ref|YP_003723734.1| GTP-binding translation factor YchF [Streptococcus pneumoniae
TCH8431/19A]
gi|387787163|ref|YP_006252231.1| GTP-binding protein [Streptococcus pneumoniae ST556]
gi|410475461|ref|YP_006742220.1| GTP-binding protein YchF [Streptococcus pneumoniae gamPNI0373]
gi|418194816|ref|ZP_12831298.1| GTPase family protein [Streptococcus pneumoniae GA47688]
gi|444386602|ref|ZP_21184629.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS125219]
gi|444391056|ref|ZP_21188969.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS70012]
gi|444393141|ref|ZP_21190800.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS81218]
gi|444396138|ref|ZP_21193672.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0002]
gi|444398531|ref|ZP_21196013.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0006]
gi|444399543|ref|ZP_21197004.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0007]
gi|444402020|ref|ZP_21199196.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0008]
gi|444404928|ref|ZP_21201862.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0009]
gi|444408148|ref|ZP_21204815.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0010]
gi|444409392|ref|ZP_21205985.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0076]
gi|444412548|ref|ZP_21208869.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0153]
gi|444415194|ref|ZP_21211437.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0199]
gi|444416869|ref|ZP_21212941.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0360]
gi|444420127|ref|ZP_21215943.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0427]
gi|444422847|ref|ZP_21218487.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0446]
gi|182628308|gb|ACB89256.1| GTP-binding protein [Streptococcus pneumoniae CGSP14]
gi|298237389|gb|ADI68520.1| GTP-binding translation factor YchF [Streptococcus pneumoniae
TCH8431/19A]
gi|353863496|gb|EHE43422.1| GTPase family protein [Streptococcus pneumoniae GA47688]
gi|379136905|gb|AFC93696.1| GTP-binding protein [Streptococcus pneumoniae ST556]
gi|406368406|gb|AFS42096.1| GTP-binding protein YchF [Streptococcus pneumoniae gamPNI0373]
gi|444254353|gb|ELU60786.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS125219]
gi|444255214|gb|ELU61570.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS70012]
gi|444255513|gb|ELU61865.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0002]
gi|444259260|gb|ELU65576.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0006]
gi|444261646|gb|ELU67945.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS81218]
gi|444267188|gb|ELU73101.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0008]
gi|444268504|gb|ELU74355.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0007]
gi|444271744|gb|ELU77495.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0010]
gi|444274510|gb|ELU80157.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0153]
gi|444275897|gb|ELU81498.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0009]
gi|444279575|gb|ELU84968.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0076]
gi|444280504|gb|ELU85870.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0199]
gi|444284959|gb|ELU90057.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0360]
gi|444285582|gb|ELU90632.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0427]
gi|444287815|gb|ELU92725.1| GTP-binding protein YchF [Streptococcus pneumoniae PNI0446]
Length = 374
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/374 (53%), Positives = 273/374 (72%), Gaps = 6/374 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 3 NMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMI 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 62 TPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGR 121
Query: 174 ----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 122 EDAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVL 180
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 181 EDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATE 240
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 241 NAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKE 300
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+Y
Sbjct: 301 VRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEY 360
Query: 410 IVQEGDVMLFRFNV 423
IVQ+GD+M FRFNV
Sbjct: 361 IVQDGDIMEFRFNV 374
>gi|260655680|ref|ZP_05861153.1| GTP-binding protein YchF [Jonquetella anthropi E3_33 E1]
gi|424845427|ref|ZP_18270038.1| GTP-binding protein YchF [Jonquetella anthropi DSM 22815]
gi|260629597|gb|EEX47791.1| GTP-binding protein YchF [Jonquetella anthropi E3_33 E1]
gi|363986865|gb|EHM13695.1| GTP-binding protein YchF [Jonquetella anthropi DSM 22815]
Length = 362
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/367 (55%), Positives = 276/367 (75%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKST+FNA+ + G A+A+N+PFCTIEPNVG+VAVPD RL VL+ + +S+
Sbjct: 1 MKLGIVGLPNVGKSTIFNAITQAG-AEASNYPFCTIEPNVGMVAVPDERLDVLARMYESK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA+V+F DIAGLVKGAS+GEGLGN+FLSHIREV++I VVRCFED+++ HV+G VDP
Sbjct: 60 KITPATVQFFDIAGLVKGASKGEGLGNQFLSHIREVNAICHVVRCFEDSNVTHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I LEL+ SDL+ +E+ + K +K AK +S E E++++ L G+ R
Sbjct: 120 MRDIETIELELILSDLEMVERAVAKTEK-LAKADRSLAPTLE--LFEQVKKTLEAGQLIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
+++L D ++ +K + LL+ KP++YVANV+E DLA G + V A+ +G V I
Sbjct: 177 TLSLTDEQKLILKGMNLLSDKPMLYVANVSEDDLAG-GLGEYAAAVQRFAASQGAGFVAI 235
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
S +VE++L EL EER E+LA LG+ +GL LI + YSLLGL ++ T+GEKET+AWTI
Sbjct: 236 SGKVESDLAELEPEERKEFLADLGLESAGLDRLISAGYSLLGLMSFLTAGEKETRAWTIP 295
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAGVIH+DFE+GFIRA+ V+Y+D VA GS+A AR +GLLR EG+DY++Q+GDV
Sbjct: 296 VGTKAPQAAGVIHTDFERGFIRAQIVSYNDLVACGSVAEARARGLLRLEGRDYVMQDGDV 355
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 356 VEFRFNV 362
>gi|86751266|ref|YP_487762.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris HaA2]
gi|86574294|gb|ABD08851.1| GTP-binding protein [Rhodopseudomonas palustris HaA2]
Length = 365
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 259/372 (69%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALM--- 230
P +D+D I EL+ +DLD +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APIADIDTIETELMLADLDSLEKRVDNLTKKAKGGDKDSKEQ------LELVTRALTLLR 174
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G+PAR + E + + L LLT KP++YV NV E A+ N VM A D
Sbjct: 175 EGRPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNAFSQAVMARAKDEG 232
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 AVAVVISAKIESEIATLSKEERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKEA 292
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD+ G A AR+ G LR EGK+Y+
Sbjct: 293 RAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYTTLGGEAGARDGGKLRLEGKEYV 352
Query: 411 VQEGDVMLFRFN 422
V +GDVM FRFN
Sbjct: 353 VADGDVMHFRFN 364
>gi|407473741|ref|YP_006788141.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
acidurici 9a]
gi|407050249|gb|AFS78294.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
acidurici 9a]
Length = 363
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/367 (54%), Positives = 265/367 (72%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A++AN+PFCTIEPNVG+V+VPD RL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITSAG-AESANYPFCTIEPNVGVVSVPDERLEGLRLLFDSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VP ++EF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCFED +I HV G++ P
Sbjct: 60 KCVPTAIEFFDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFEDENITHVEGRISP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+++INLEL+ +DL+ + KR+E+ +K K +S K+ + L KI+ L DG R
Sbjct: 120 IEDIEIINLELILADLEVVTKRIERAQK-LLKSDKSLQKEVD--LLIKIKGTLEDGNSVR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S+ +D E +K LL+ KPI+YV N++E D+ N +V EV AS S V I
Sbjct: 177 SLEFDDDEVTIVKSFNLLSNKPILYVTNISEEDVISNPENEYVKEVQEYASKEHSQAVII 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SAQ+EAE++EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+G KE +AWTI+
Sbjct: 237 SAQIEAEVSELDDEEKKAFLNDLGLKESGLDKLIKASYKLLGLMSYLTAGPKEVRAWTIK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQAAG IH+D E+GFIRAE + Y D + G A+EKGL+R EGKDY++Q+GDV
Sbjct: 297 IGTKAPQAAGKIHTDMERGFIRAEVINYGDLIECGGYPKAKEKGLVRLEGKDYVMQDGDV 356
Query: 417 MLFRFNV 423
++FRFNV
Sbjct: 357 VVFRFNV 363
>gi|358466161|ref|ZP_09176015.1| GTP-binding protein YchF [Fusobacterium sp. oral taxon 370 str.
F0437]
gi|357069334|gb|EHI79258.1| GTP-binding protein YchF [Fusobacterium sp. oral taxon 370 str.
F0437]
Length = 364
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/367 (55%), Positives = 274/367 (74%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + ++ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDGRLNELAKIVSPERIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEFVDIAGLVKGAS+GEGLGNKFLS+IR +I QVVRCF+D++++HV+G+VDP SD
Sbjct: 65 PATVEFVDIAGLVKGASKGEGLGNKFLSNIRATSAICQVVRCFDDSNVIHVSGQVDPISD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ I+K + EKL + K K+S + A L K+++ L + K +
Sbjct: 125 IEVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----AVLPKVKKHLEEFKLVK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L + E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + A + S V +
Sbjct: 180 TLDLTEDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVKDYAEKIGSEVVIV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VEAEL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVEAELQEMDDESKKEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YDDF+ ++E G+LR EGK+YIV +GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDDFIKHSGWKGSQENGVLRLEGKEYIVHDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|397665244|ref|YP_006506782.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
gi|395128655|emb|CCD06873.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
Length = 363
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSNIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVLHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L G P
Sbjct: 120 DPLSDIEVINTELALADMETLEKSL--LKVGKNSKSGNKEAIFELKTLEKIKAHLDAGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS + V
Sbjct: 178 VRTLELTPEEEQISKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G LR EGK+YIV +G
Sbjct: 295 IRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAGKLRLEGKEYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|359411172|ref|ZP_09203637.1| GTP-binding protein YchF [Clostridium sp. DL-VIII]
gi|357170056|gb|EHI98230.1| GTP-binding protein YchF [Clostridium sp. DL-VIII]
Length = 365
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEEMYSTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+FSDL+ +E+RMEK +K ++ D +K E +E+I+ L KPA
Sbjct: 120 IRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKF---EYGVMERIKAQLEANKPA 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
R++ + D E IK L L+T KP++Y N++E D+ + N +V +V A+D S +
Sbjct: 177 RTLEVTDEEEAFIKGLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAADENSEVM 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA++E EL+ L EE+ E L G+ ESGL LI ++Y LLGL ++ T+G +E +AWT
Sbjct: 237 VVSAKIEEELSGLEDEEKAEMLGEYGLKESGLDKLIEASYKLLGLMSFLTAGVQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSD E+GFIRAE V+YDD V GS A+A+EKG R EGKDYI+Q+G
Sbjct: 297 IKRGTKAPQAAGKIHSDIERGFIRAEIVSYDDLVECGSEASAKEKGKFRLEGKDYIMQDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|161869377|ref|YP_001598544.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis 053442]
gi|161594930|gb|ABX72590.1| GTP-binding protein, putative [Neisseria meningitidis 053442]
Length = 363
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|289207533|ref|YP_003459599.1| GTP-binding protein YchF [Thioalkalivibrio sp. K90mix]
gi|288943164|gb|ADC70863.1| GTP-binding protein YchF [Thioalkalivibrio sp. K90mix]
Length = 364
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 266/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + A N+PFCTI+PNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALT-RAEIAAENYPFCTIDPNVGVVEVPDPRLARLTEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + +VEFVDIAGLV GA+QGEGLGN+FL+HIRE D+I QVVRCFED+DIVHV GKV
Sbjct: 60 PERTLATTVEFVDIAGLVAGAAQGEGLGNQFLAHIRETDAIAQVVRCFEDDDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++ I+ EL+ +DL+ K + +L +A SQ K A+ A EK+ L G P
Sbjct: 120 DPLADIETISTELMLADLETANKALTRL--ARAAKSQDKTAIAQLKAAEKVAAGLDQGVP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L++ ER + L LLT+KP++Y+ANV E+ LA G N V V A++ + V
Sbjct: 178 ARAQDLDEDERRLLYDLHLLTIKPLMYIANVDEASLA--GGNAMVEAVQAKAAEEGAEVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++ A +EAE+ L EERVE+LA LG+ E GL +IR+ Y LL L+T+FT+GEKE +AWT
Sbjct: 236 SVCAAIEAEIAVLDPEERVEFLADLGLEEPGLDRVIRTAYRLLDLQTFFTAGEKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+R G TAPQAAGVIH+DFE+GFIRAE V YDDFVA A++ G R EGK+Y++ EG
Sbjct: 296 VRRGSTAPQAAGVIHTDFERGFIRAEVVGYDDFVANNGEQGAKDAGKWRLEGKEYLMHEG 355
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 356 DVVHFRFNV 364
>gi|52842860|ref|YP_096659.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila subsp. pneumophila str. Philadelphia 1]
gi|54295492|ref|YP_127907.1| GTP-dependent nucleic acid-binding protein EngD [Legionella
pneumophila str. Lens]
gi|378778549|ref|YP_005186988.1| GTP binding protein [Legionella pneumophila subsp. pneumophila ATCC
43290]
gi|52629971|gb|AAU28712.1| GTP binding protein [Legionella pneumophila subsp. pneumophila str.
Philadelphia 1]
gi|53755324|emb|CAH16820.1| hypothetical protein lpl2579 [Legionella pneumophila str. Lens]
gi|307611529|emb|CBX01206.1| hypothetical protein LPW_29051 [Legionella pneumophila 130b]
gi|364509365|gb|AEW52889.1| GTP binding protein [Legionella pneumophila subsp. pneumophila ATCC
43290]
Length = 363
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVLHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L G P
Sbjct: 120 DPLSDIEVINTELALADMETLEKSL--LKVGKNSKSGNKEAIFELKTLEKIKAHLDAGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS + V
Sbjct: 178 VRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVQALASQENASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G LR EGK+YIV +G
Sbjct: 295 IRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAGKLRLEGKEYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|416189052|ref|ZP_11615068.1| GTP-binding protein EngD [Neisseria meningitidis M0579]
gi|325135622|gb|EGC58239.1| GTP-binding protein EngD [Neisseria meningitidis M0579]
Length = 363
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMVELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|154485079|ref|ZP_02027527.1| hypothetical protein EUBVEN_02802 [Eubacterium ventriosum ATCC
27560]
gi|149734032|gb|EDM50151.1| GTP-binding protein YchF [Eubacterium ventriosum ATCC 27560]
Length = 395
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/397 (50%), Positives = 290/397 (73%), Gaps = 6/397 (1%)
Query: 29 NANLIGVLGITTTSSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88
N +L+ + + ++ + + + ++ GIVGLPNVGKSTLFN++ + G A++AN+P
Sbjct: 3 NYHLVFTIDLCIANNNFIYITKDWRILIMKLGIVGLPNVGKSTLFNSLTKAG-AESANYP 61
Query: 89 FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSH 148
FCTI+PNVG+VAVPD R+ L+ L S+K +PA +EFVDIAGLVKGAS+GEGLGN+FL++
Sbjct: 62 FCTIDPNVGVVAVPDERIDKLTALYNSKKTIPAVIEFVDIAGLVKGASKGEGLGNQFLAN 121
Query: 149 IREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK 208
IREVD+I+ VVRCFED +++HV+G +DP D++ IN EL+FSD++ +E+R+ K +G A+
Sbjct: 122 IREVDAIVHVVRCFEDTNVIHVDGSIDPIRDIETINYELIFSDVEILERRIAKTTRG-AR 180
Query: 209 DSQSKLKDAEKAALEKIQQALMDGKPA-RSVTLNDFERDSIKQLCLLTMKPIIYVANVAE 267
+ ++ K+ + ++++ L +G A + T ++ E + + LLT KP+I+ ANV+E
Sbjct: 181 NDKALAKELDFQ--QRMKAFLEEGNLAIKYETEDEDELAWLAEYNLLTYKPVIFAANVSE 238
Query: 268 SDLADPG-SNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGL 326
DLAD G SNPHV V A++ S ISA++E E++EL +E+ +L LG+SESGL
Sbjct: 239 DDLADDGNSNPHVEAVRKFAAENGSEVFVISAEIEQEISELDDDEKQMFLEDLGISESGL 298
Query: 327 GNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDD 386
LI+++YSLLGL +Y TSGE ET+AWTI+ G APQAAG IH+DFE+GFI AE VAY D
Sbjct: 299 DKLIKASYSLLGLISYLTSGEAETRAWTIKKGTKAPQAAGKIHTDFERGFICAEVVAYKD 358
Query: 387 FVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423
+ GSLA A+EKGL+ +GKDY+VQ+GDV+ FRFNV
Sbjct: 359 LIECGSLAKAKEKGLVGLQGKDYVVQDGDVITFRFNV 395
>gi|338971772|ref|ZP_08627154.1| GTP-binding and nucleic acid-binding protein YchF
[Bradyrhizobiaceae bacterium SG-6C]
gi|338235080|gb|EGP10188.1| GTP-binding and nucleic acid-binding protein YchF
[Bradyrhizobiaceae bacterium SG-6C]
Length = 365
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 260/371 (70%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVRGASKGEGLGNQFLANIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
P +D++ I EL+ +DLD +EKR++ L KG KDS+ +L E+A + L D
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDNLSKKAKGGDKDSKEQLDLVERAL-----KLLRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP R + E + + L LLT KP++YV NV ES A N V + A +
Sbjct: 176 GKPTRGMERKSEEERNFRMLGLLTSKPVLYVCNVEESSAAT--GNSFSQAVFDHAKKEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +
Sbjct: 234 VAVVISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEAR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP AAGVIH+DFEKGFIRAET+AY+D+VA A AR+ G LR EGK+YIV
Sbjct: 294 AWTITKGTKAPAAAGVIHTDFEKGFIRAETIAYEDYVALNGEAGARDAGKLRLEGKEYIV 353
Query: 412 QEGDVMLFRFN 422
+GDVM FRFN
Sbjct: 354 ADGDVMHFRFN 364
>gi|357237957|ref|ZP_09125296.1| GTP-binding protein YchF [Streptococcus ictaluri 707-05]
gi|356753461|gb|EHI70576.1| GTP-binding protein YchF [Streptococcus ictaluri 707-05]
Length = 371
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLDKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRD 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DLD I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPMADIDTINLELILADLDSINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E +K L LLT KP++YVANV E + DP +V ++ + A+
Sbjct: 179 DGKSARTIDFTDEEAKVVKGLFLLTTKPVLYVANVDEDKVVDPDDIDYVKQIRHFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y +LGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHILGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLITYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|240146616|ref|ZP_04745217.1| GTP-binding protein YchF [Roseburia intestinalis L1-82]
gi|257201239|gb|EEU99523.1| GTP-binding protein YchF [Roseburia intestinalis L1-82]
Length = 366
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 277/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K+ E +E +++ L DGK AR
Sbjct: 120 ARDIETINLELIFSDIEILDRRISKIAK-QARMDKTLAKELE--LVEAVKKHLEDGKMAR 176
Query: 237 SVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
+ + D + I K LLT KP+IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 177 TFEVPDDDDAQIWFKGYNLLTAKPMIYAANVAEDDLADDGASNPHVAKVREMAKEEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I AQ+E EL EL +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +AW
Sbjct: 237 FVICAQIEQELAELDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKG++ EGKDY+V++
Sbjct: 297 TIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAREKGIVGMEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVILFRFNV 366
>gi|397668328|ref|YP_006509865.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
gi|395131739|emb|CCD10032.1| putative GTP-binding protein [Legionella pneumophila subsp.
pneumophila]
Length = 363
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVIHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L G P
Sbjct: 120 DPLSDIEVINTELALADMETLEKSL--LKVGKNSKSGNKEAIFELKTLEKIKAHLDAGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L E K+L LLT KP++Y+ANV ++ + NP + +V LAS + V
Sbjct: 178 VRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLAKVQALASQENASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G TAPQAAGVIH+DFEKGFIRAE ++YDDF+ G A+E G LR EGK+YIV +G
Sbjct: 295 IRKGATAPQAAGVIHTDFEKGFIRAEVISYDDFIRFGGEQGAKEAGKLRLEGKEYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|331269344|ref|YP_004395836.1| GTP-binding protein YchF [Clostridium botulinum BKT015925]
gi|329125894|gb|AEB75839.1| GTP-binding protein YchF [Clostridium botulinum BKT015925]
Length = 365
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 271/370 (73%), Gaps = 8/370 (2%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD RL VL + +++
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDKRLDVLEKMYETK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K + A+VEF DIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVRCF+D++IVHV G +DP
Sbjct: 60 KKIYATVEFYDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRCFQDDNIVHVEGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD--AEKAALEKIQQALMDGKP 234
D++ INLEL+ +DL+ IE+R EK + ++S +K+ AE LEK++ L KP
Sbjct: 120 IRDIETINLELILADLEVIERRYEK----TVRSARSGVKEAKAELPVLEKVKAHLEANKP 175
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGR 293
RS+ L E++ +K L+T KPI+YV+N+ E DL + N V +V A + S
Sbjct: 176 VRSLELTKDEQEIVKGFFLITSKPILYVSNICEDDLVSGNTENDFVKKVKQYAKEEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+T+ A++E EL+ L EER E L+ G+ E GL LIRS+YSLLGL ++ T+G+ E +AW
Sbjct: 236 ITVCAKIEEELSTLEDEERDELLSEYGLKEPGLNRLIRSSYSLLGLMSFLTAGKIEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP+AAG IH+D E+GFIRAE V+YD V GS AAA+EKGL R EGKDY++Q+
Sbjct: 296 TIVKGTKAPKAAGKIHTDIERGFIRAEIVSYDALVECGSEAAAKEKGLFRLEGKDYVMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVNFRFNV 365
>gi|188586450|ref|YP_001917995.1| GTP-binding protein YchF [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179351137|gb|ACB85407.1| GTP-binding protein YchF [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 363
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/367 (54%), Positives = 267/367 (72%), Gaps = 4/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A +ANFPFCTI+PN+G+V VPD RL L+ L +
Sbjct: 1 MQIGIVGLPNVGKSTLFNAITQAG-ADSANFPFCTIDPNIGVVDVPDGRLEKLTELVNPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K P ++EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFE DI HV+G +DP
Sbjct: 60 KTTPTAIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFESQDITHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLELVFSDL+ +E+R+EK + K S K E L+++Q+ L +G+ AR
Sbjct: 120 IRDIETINLELVFSDLELVERRIEKTE--KLMKSGGKEYQKEHNLLKRLQETLSEGRSAR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
S+T + E++ +K + LL+ KPI+YVANV E DL SN V +V A + S + +
Sbjct: 178 SLTFTNEEKEILKSMPLLSTKPILYVANVGEEDLIGD-SNDLVKQVEEYAREEGSEVIKV 236
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A +E+E+ EL +E+ E+L +G+ E GL +I++ Y LLGL T+FT+GEKE +AWT++
Sbjct: 237 CASIESEIAELDDDEKDEFLNEIGLEEPGLNRVIKAGYKLLGLITFFTAGEKEVRAWTVK 296
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAPQAAG IHSD E+GFIRAE + +DD + S A ARE G+LR EGKDYIV++GDV
Sbjct: 297 EGATAPQAAGKIHSDLERGFIRAEVITFDDILKYESYAKARENGVLRLEGKDYIVKDGDV 356
Query: 417 MLFRFNV 423
FRFNV
Sbjct: 357 THFRFNV 363
>gi|125716892|ref|YP_001034025.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK36]
gi|125496809|gb|ABN43475.1| GTP-binding protein, putative [Streptococcus sanguinis SK36]
Length = 371
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDARLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 DGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVADPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYNDLVHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|15966110|ref|NP_386463.1| GTP-dependent nucleic acid-binding protein EngD [Sinorhizobium
meliloti 1021]
gi|334317114|ref|YP_004549733.1| GTP-binding protein YchF [Sinorhizobium meliloti AK83]
gi|384530242|ref|YP_005714330.1| GTP-binding protein YchF [Sinorhizobium meliloti BL225C]
gi|384535277|ref|YP_005719362.1| putative GTP-dependent nucleic acid-binding protein engD
[Sinorhizobium meliloti SM11]
gi|407721416|ref|YP_006841078.1| GTP-dependent nucleic acid-binding protein engD [Sinorhizobium
meliloti Rm41]
gi|433614182|ref|YP_007190980.1| GTP-binding protein YchF [Sinorhizobium meliloti GR4]
gi|15075380|emb|CAC46936.1| Putative GTP-dependent nucleic acid-binding protein EngD
[Sinorhizobium meliloti 1021]
gi|333812418|gb|AEG05087.1| GTP-binding protein YchF [Sinorhizobium meliloti BL225C]
gi|334096108|gb|AEG54119.1| GTP-binding protein YchF [Sinorhizobium meliloti AK83]
gi|336032169|gb|AEH78101.1| putative GTP-dependent nucleic acid-binding protein engD
[Sinorhizobium meliloti SM11]
gi|407319648|emb|CCM68252.1| GTP-dependent nucleic acid-binding protein engD [Sinorhizobium
meliloti Rm41]
gi|429552372|gb|AGA07381.1| GTP-binding protein YchF [Sinorhizobium meliloti GR4]
Length = 367
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 269/375 (71%), Gaps = 14/375 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
P D D I EL+ +DLD +E+R E+ +K GK K+S ++L E A+L+ +Q+
Sbjct: 121 HPVEDADTIETELMLADLDSLERRAEQTRKRATGKDKESMAQLPIME-ASLKLLQE---- 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A +
Sbjct: 176 GKPVRTL-LSKLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMARE 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QGAETVVISAAIESEVAQLPEEEAKEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++ G A+E G R EGK+
Sbjct: 293 ETRAWTIPRGTKAPQAAGVIHSDFERGFIRANTIAYDDYIGYGGENGAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDV+ FRFN
Sbjct: 353 YVVQDGDVIHFRFNT 367
>gi|407478655|ref|YP_006792532.1| GTP-binding protein YchF [Exiguobacterium antarcticum B7]
gi|407062734|gb|AFS71924.1| GTP-binding protein YchF [Exiguobacterium antarcticum B7]
Length = 366
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/370 (56%), Positives = 269/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MGLTAGIVGLPNVGKSTLFNAITQAG-VEAANYPFATIDPNVGVVEVPDARLRKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I QVVRCF D +I HV+GKV
Sbjct: 60 PKKTIPTAFEFTDIAGIVKGASKGEGLGNKFLANIREVDAICQVVRCFIDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
P D++ INLEL+ +DL+ +EKR+++++K K++D + E ALE I L D K
Sbjct: 120 SPIDDIETINLELILADLELVEKRIQRVQKQVKSRDKNAA---GELEALEIILALLEDEK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR LN+ + +K LLTMKP++YVANV E ++AD SN +V V A+ +
Sbjct: 177 PARLAELNEDQAAIVKHFQLLTMKPMLYVANVGEDEVADADSNENVQLVREFAAKEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I A++E E+ EL EER E+L LG+ ESGL LI + Y+ LGL TYFT+GEKE +AW
Sbjct: 237 IIICARIEEEIAELEPEERQEFLVDLGIEESGLDQLIHAAYNTLGLATYFTAGEKEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AGVIHSDFE+GFIRAE VAYDD AAG++A +E+G RSEGK+Y+ Q+
Sbjct: 297 TFKKGMKAPQCAGVIHSDFERGFIRAEVVAYDDLAAAGNMATVKEQGRYRSEGKEYVFQD 356
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 357 GDVVTFRFNV 366
>gi|417916986|ref|ZP_12560550.1| GTP-binding protein YchF [Streptococcus parasanguinis SK236]
gi|342831268|gb|EGU65587.1| GTP-binding protein YchF [Streptococcus parasanguinis SK236]
Length = 371
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-IARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIEYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|225847929|ref|YP_002728092.1| GTP-dependent nucleic acid-binding protein EngD
[Sulfurihydrogenibium azorense Az-Fu1]
gi|225643635|gb|ACN98685.1| GTP-binding protein YchF [Sulfurihydrogenibium azorense Az-Fu1]
Length = 370
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 266/373 (71%), Gaps = 7/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKST+FNA+ E KA AN+PFCTI+PNVGIV VPD RL+ L+ + K
Sbjct: 1 MKMNVGIVGLPNVGKSTIFNALTETAKASVANYPFCTIDPNVGIVNVPDERLYKLAEIEK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+ VPA++EFVDIAGLV+GAS+GEGLGN+FL++IR+V +I VVRCF+D DI+HV G V
Sbjct: 61 SKNIVPATIEFVDIAGLVRGASKGEGLGNQFLANIRQVSAIAHVVRCFDDPDIIHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D ++I EL+ +DL IEKR+E K KA + SK E LEK + L D KP
Sbjct: 121 NPVRDAEIIETELILADLQSIEKRLE--KSTKAAKTGSKEAKFEVEVLEKAKAILEDLKP 178
Query: 235 ARSVTLNDFERDSI----KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
R+ T + FE++ + K L +T+KP++YVAN+ E DL D +NP++ ++ A
Sbjct: 179 LRTNT-DKFEKEELEWLNKTLFPITIKPLMYVANIPEEDLPDGKNNPYLQQLKEKAEKEG 237
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
S V + +VE EL ELP EER E+L +LG+ E GL +I++ YSLLGL TYFT+GEKE
Sbjct: 238 SPVVVLCGKVEQELIELPKEERKEFLNALGLEEPGLNKMIKTGYSLLGLITYFTAGEKEA 297
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI+ G APQAAG IHSD E+GFI AE + Y+D + GS+ A+E GL+R EGKDY
Sbjct: 298 RAWTIKKGTKAPQAAGEIHSDIERGFIAAEIINYEDLIKIGSIQKAKELGLVRIEGKDYE 357
Query: 411 VQEGDVMLFRFNV 423
V++GDV+ FRFNV
Sbjct: 358 VKDGDVIYFRFNV 370
>gi|422111114|ref|ZP_16380875.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378315|emb|CBX23061.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 363
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DF+A G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFIALGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|119383088|ref|YP_914144.1| GTP-dependent nucleic acid-binding protein EngD [Paracoccus
denitrificans PD1222]
gi|119372855|gb|ABL68448.1| GTP-binding protein YchF [Paracoccus denitrificans PD1222]
Length = 365
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/373 (55%), Positives = 261/373 (69%), Gaps = 14/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPDPRL L+G++
Sbjct: 1 MGFRMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDPRLDKLAGIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRITFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM----EKLKKG-KAKDSQSKLKDAEKAALEKIQQAL 229
DP +D + I EL+ +DL+ IE+R+ KLK G K +Q KL A +AALE
Sbjct: 121 DPIADAETIETELMIADLESIERRLANIQRKLKGGDKEAVAQEKLLKAAQAALES----- 175
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKPAR+V + D +R + L LLT KP+++V NV E D A G N V +A++
Sbjct: 176 --GKPARTVQVADEDRKAWDMLQLLTAKPVLFVCNV-EEDKAATG-NSQSERVAQMAAEQ 231
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+G V ISA++E E+++LP+EE +L +G+ E+GL LIR Y LLGL TYFT G KE
Sbjct: 232 GAGHVVISAKIEEEISQLPAEEADMFLEEMGLHEAGLDRLIREGYKLLGLETYFTVGPKE 291
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI G AP AAGVIH DFE+GFIRAET+AYDD+V A ARE G R EGK Y
Sbjct: 292 ARAWTIHKGTLAPAAAGVIHGDFERGFIRAETIAYDDYVTYKGEAGAREAGKFRVEGKSY 351
Query: 410 IVQEGDVMLFRFN 422
VQ+GDV+ F FN
Sbjct: 352 EVQDGDVLHFLFN 364
>gi|83644560|ref|YP_432995.1| GTP-dependent nucleic acid-binding protein EngD [Hahella chejuensis
KCTC 2396]
gi|83632603|gb|ABC28570.1| predicted GTPase, probable translation factor [Hahella chejuensis
KCTC 2396]
Length = 363
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 265/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN GIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTQAG-IDAENFPFCTIEPNSGIVAMPDPRLQKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCF D ++VHV KV
Sbjct: 60 PQKVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFADENVVHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D+DVIN EL +DLD +EK R+ ++ KG K ++ +++ +EK+ L +
Sbjct: 120 DPAADIDVINTELALADLDTVEKGIKRISRIAKGGDKFAKQQIE-----VMEKLLPHLNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R++ L+ E I++LCLLT+KP +Y+ANVAE + NPH++ V +A +
Sbjct: 175 AKPVRALNLSAEEMLVIRELCLLTVKPTMYIANVAEDGFEN---NPHLDVVRAIAEKEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I ++E+E+ EL EE+ E+LA LG+ E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 VVVPICNKLESEIAELEDEEKAEFLADLGMEEPGLDRVIRAGYKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G TAPQAAGVIHSDFE+GFIRAE V YDDF + A+E G R EGKDYIV
Sbjct: 292 AWTVKIGATAPQAAGVIHSDFERGFIRAEVVGYDDFTSFNGEQGAKEAGKWRLEGKDYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 352 QDGDVIHFRFNV 363
>gi|330718088|ref|ZP_08312688.1| GTPase, translation factor [Leuconostoc fallax KCTC 3537]
Length = 367
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 271/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDARLARIQEMVP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F++++I+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLDNIRQVNAIVHVVRAFDNDEIIHVNGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D+D IN EL+ +DL+ I+KR +++K +AK+++ K AE A LEKI+ L GK
Sbjct: 120 NPLDDIDTINTELILADLETIDKRFSRVEK-QAKNAKDKDAIAELAVLEKIKPTLESGKS 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++T N+ E +K L LLT KP++YVAN++E D+++P ++ + + A+ + +
Sbjct: 179 VRTLTFNEEELLIVKGLFLLTSKPVLYVANISEDDMSNPEASDYFKTIQEFAATEGADVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ +L +E+ +YL G+ E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 239 GLSASAEEEIAQLDDDEKGDYLELAGIEEPGLNKLIRAAYHLLDLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+AGM APQ AGVIHSDFE+GFIRAET+++DD GS+ A RE G LRSEGK+Y VQ+G
Sbjct: 299 FKAGMKAPQVAGVIHSDFERGFIRAETISFDDLDQYGSVKAVREAGRLRSEGKEYTVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|450046039|ref|ZP_21838739.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N34]
gi|449199374|gb|EMC00445.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N34]
Length = 371
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARTEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|15902048|ref|NP_357598.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae R6]
gi|116516338|ref|YP_815423.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae D39]
gi|148984548|ref|ZP_01817836.1| translation-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|148988908|ref|ZP_01820323.1| translation-associated GTPase [Streptococcus pneumoniae SP6-BS73]
gi|148993581|ref|ZP_01823052.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|149013380|ref|ZP_01834089.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|149020162|ref|ZP_01835136.1| translation-associated GTPase [Streptococcus pneumoniae SP23-BS72]
gi|168484304|ref|ZP_02709256.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC1873-00]
gi|168487224|ref|ZP_02711732.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC1087-00]
gi|168489339|ref|ZP_02713538.1| GTP-binding protein YchF [Streptococcus pneumoniae SP195]
gi|168491774|ref|ZP_02715917.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC0288-04]
gi|168493996|ref|ZP_02718139.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC3059-06]
gi|169834529|ref|YP_001693438.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae Hungary19A-6]
gi|221230952|ref|YP_002510104.1| GTP-binding protein [Streptococcus pneumoniae ATCC 700669]
gi|225853615|ref|YP_002735127.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae JJA]
gi|225855739|ref|YP_002737250.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae P1031]
gi|225860050|ref|YP_002741559.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae Taiwan19F-14]
gi|298229485|ref|ZP_06963166.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|303254905|ref|ZP_07340990.1| translation-associated GTPase [Streptococcus pneumoniae BS455]
gi|303259730|ref|ZP_07345706.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|303262197|ref|ZP_07348142.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|303265393|ref|ZP_07351300.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|303266059|ref|ZP_07351953.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|303268467|ref|ZP_07354261.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|307126178|ref|YP_003878209.1| GTP-binding protein YchF [Streptococcus pneumoniae 670-6B]
gi|307705910|ref|ZP_07642748.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
mitis SK597]
gi|387756564|ref|YP_006063543.1| putative GTP-binding protein [Streptococcus pneumoniae OXC141]
gi|387758388|ref|YP_006065366.1| putative putative GTP-binding protein [Streptococcus pneumoniae
INV200]
gi|405759927|ref|YP_006700523.1| GTP-binding protein [Streptococcus pneumoniae SPNA45]
gi|415701617|ref|ZP_11458440.1| GTPase family protein [Streptococcus pneumoniae 459-5]
gi|415750539|ref|ZP_11478381.1| GTPase family protein [Streptococcus pneumoniae SV35]
gi|415753437|ref|ZP_11480419.1| GTPase family protein [Streptococcus pneumoniae SV36]
gi|417313713|ref|ZP_12100422.1| GTP-binding protein [Streptococcus pneumoniae GA04375]
gi|417677965|ref|ZP_12327368.1| GTP-binding protein [Streptococcus pneumoniae GA17545]
gi|417680242|ref|ZP_12329635.1| GTPase [Streptococcus pneumoniae GA17570]
gi|417685473|ref|ZP_12334754.1| GTP-binding conserved hypothetical domain protein [Streptococcus
pneumoniae GA41301]
gi|417695122|ref|ZP_12344306.1| GTPase [Streptococcus pneumoniae GA47901]
gi|417697441|ref|ZP_12346616.1| GTPase [Streptococcus pneumoniae GA47368]
gi|418072882|ref|ZP_12710146.1| GTPase family protein [Streptococcus pneumoniae GA11184]
gi|418079699|ref|ZP_12716918.1| GTPase family protein [Streptococcus pneumoniae 4027-06]
gi|418081903|ref|ZP_12719109.1| GTP-binding protein [Streptococcus pneumoniae 6735-05]
gi|418084108|ref|ZP_12721297.1| GTP-binding protein YchF [Streptococcus pneumoniae GA47281]
gi|418087754|ref|ZP_12724919.1| GTP-binding protein YchF [Streptococcus pneumoniae GA47033]
gi|418090624|ref|ZP_12727774.1| GTP-binding protein YchF [Streptococcus pneumoniae GA43265]
gi|418092865|ref|ZP_12730001.1| GTP-binding protein YchF [Streptococcus pneumoniae GA44452]
gi|418095051|ref|ZP_12732174.1| GTP-binding protein YchF [Streptococcus pneumoniae GA49138]
gi|418099584|ref|ZP_12736677.1| GTP-binding protein YchF [Streptococcus pneumoniae 6901-05]
gi|418099598|ref|ZP_12736689.1| GTP-binding protein YchF [Streptococcus pneumoniae 7286-06]
gi|418103983|ref|ZP_12741051.1| GTP-binding protein YchF [Streptococcus pneumoniae NP070]
gi|418106388|ref|ZP_12743438.1| GTP-binding protein YchF [Streptococcus pneumoniae GA44500]
gi|418108916|ref|ZP_12745949.1| GTP-binding protein YchF [Streptococcus pneumoniae GA41410]
gi|418111242|ref|ZP_12748257.1| GTPase family protein [Streptococcus pneumoniae GA49447]
gi|418113581|ref|ZP_12750577.1| GTPase family protein [Streptococcus pneumoniae GA41538]
gi|418115764|ref|ZP_12752747.1| GTPase family protein [Streptococcus pneumoniae 5787-06]
gi|418117934|ref|ZP_12754900.1| GTPase family protein [Streptococcus pneumoniae 6963-05]
gi|418119639|ref|ZP_12756590.1| GTPase family protein [Streptococcus pneumoniae GA18523]
gi|418124617|ref|ZP_12761544.1| GTPase family protein [Streptococcus pneumoniae GA44378]
gi|418126917|ref|ZP_12763819.1| GTPase family protein [Streptococcus pneumoniae GA44511]
gi|418129157|ref|ZP_12766045.1| GTPase family protein [Streptococcus pneumoniae NP170]
gi|418133704|ref|ZP_12770570.1| GTPase family protein [Streptococcus pneumoniae GA11304]
gi|418136031|ref|ZP_12772880.1| GTPase family protein [Streptococcus pneumoniae GA11426]
gi|418138362|ref|ZP_12775196.1| GTPase family protein [Streptococcus pneumoniae GA11663]
gi|418140588|ref|ZP_12777409.1| GTPase family protein [Streptococcus pneumoniae GA13338]
gi|418142793|ref|ZP_12779600.1| GTPase family protein [Streptococcus pneumoniae GA13455]
gi|418151759|ref|ZP_12788501.1| GTPase family protein [Streptococcus pneumoniae GA14798]
gi|418154030|ref|ZP_12790764.1| GTPase family protein [Streptococcus pneumoniae GA16121]
gi|418156215|ref|ZP_12792936.1| GTPase family protein [Streptococcus pneumoniae GA16242]
gi|418160994|ref|ZP_12797690.1| GTPase family protein [Streptococcus pneumoniae GA17227]
gi|418163357|ref|ZP_12800035.1| GTPase family protein [Streptococcus pneumoniae GA17328]
gi|418165571|ref|ZP_12802233.1| GTPase family protein [Streptococcus pneumoniae GA17371]
gi|418167913|ref|ZP_12804563.1| GTPase family protein [Streptococcus pneumoniae GA17971]
gi|418168166|ref|ZP_12804812.1| GTPase family protein [Streptococcus pneumoniae GA19077]
gi|418170238|ref|ZP_12806871.1| GTPase family protein [Streptococcus pneumoniae GA19451]
gi|418174681|ref|ZP_12811287.1| GTPase family protein [Streptococcus pneumoniae GA41277]
gi|418177067|ref|ZP_12813654.1| GTPase family protein [Streptococcus pneumoniae GA41437]
gi|418179393|ref|ZP_12815970.1| GTPase family protein [Streptococcus pneumoniae GA41565]
gi|418181615|ref|ZP_12818180.1| GTPase family protein [Streptococcus pneumoniae GA41688]
gi|418186018|ref|ZP_12822553.1| GTPase family protein [Streptococcus pneumoniae GA47283]
gi|418192709|ref|ZP_12829208.1| GTPase family protein [Streptococcus pneumoniae GA47388]
gi|418194798|ref|ZP_12831284.1| GTPase family protein [Streptococcus pneumoniae GA47439]
gi|418201183|ref|ZP_12837622.1| GTPase family protein [Streptococcus pneumoniae GA47976]
gi|418215471|ref|ZP_12842202.1| GTPase family protein [Streptococcus pneumoniae GA54644]
gi|418217707|ref|ZP_12844381.1| GTPase family protein [Streptococcus pneumoniae Netherlands15B-37]
gi|418220009|ref|ZP_12846670.1| GTPase family protein [Streptococcus pneumoniae NP127]
gi|418222303|ref|ZP_12848952.1| GTPase family protein [Streptococcus pneumoniae GA47751]
gi|418222319|ref|ZP_12848966.1| GTPase family protein [Streptococcus pneumoniae 5185-06]
gi|418226615|ref|ZP_12853239.1| GTPase family protein [Streptococcus pneumoniae NP112]
gi|418228745|ref|ZP_12855358.1| GTPase family protein [Streptococcus pneumoniae 3063-00]
gi|418233224|ref|ZP_12859807.1| GTPase family protein [Streptococcus pneumoniae GA07228]
gi|418235450|ref|ZP_12862023.1| GTPase family protein [Streptococcus pneumoniae GA08780]
gi|418237538|ref|ZP_12864101.1| GTPase family protein [Streptococcus pneumoniae GA19690]
gi|418239794|ref|ZP_12866340.1| GTPase family protein [Streptococcus pneumoniae NorthCarolina6A-23]
gi|419423875|ref|ZP_13964083.1| GTPase family protein [Streptococcus pneumoniae GA43264]
gi|419426215|ref|ZP_13966402.1| GTPase family protein [Streptococcus pneumoniae 5652-06]
gi|419432642|ref|ZP_13972767.1| GTPase family protein [Streptococcus pneumoniae EU-NP05]
gi|419434872|ref|ZP_13974986.1| GTPase family protein [Streptococcus pneumoniae GA40183]
gi|419439236|ref|ZP_13979298.1| GTPase family protein [Streptococcus pneumoniae GA13499]
gi|419443652|ref|ZP_13983672.1| GTPase family protein [Streptococcus pneumoniae GA13224]
gi|419445782|ref|ZP_13985789.1| GTPase family protein [Streptococcus pneumoniae 7879-04]
gi|419452176|ref|ZP_13992156.1| GTPase family protein [Streptococcus pneumoniae EU-NP02]
gi|419456521|ref|ZP_13996475.1| GTPase family protein [Streptococcus pneumoniae EU-NP04]
gi|419461088|ref|ZP_14001010.1| GTPase family protein [Streptococcus pneumoniae GA02270]
gi|419463406|ref|ZP_14003305.1| GTPase family protein [Streptococcus pneumoniae GA02714]
gi|419465585|ref|ZP_14005473.1| GTPase family protein [Streptococcus pneumoniae GA04175]
gi|419467917|ref|ZP_14007795.1| GTPase family protein [Streptococcus pneumoniae GA05248]
gi|419470048|ref|ZP_14009912.1| GTPase family protein [Streptococcus pneumoniae GA06083]
gi|419474332|ref|ZP_14014177.1| GTPase family protein [Streptococcus pneumoniae GA13430]
gi|419476638|ref|ZP_14016469.1| GTPase family protein [Streptococcus pneumoniae GA14688]
gi|419481060|ref|ZP_14020861.1| GTPase family protein [Streptococcus pneumoniae GA19101]
gi|419485484|ref|ZP_14025255.1| GTPase family protein [Streptococcus pneumoniae GA43257]
gi|419486346|ref|ZP_14026113.1| GTPase family protein [Streptococcus pneumoniae GA44128]
gi|419489913|ref|ZP_14029658.1| GTPase family protein [Streptococcus pneumoniae GA44386]
gi|419494363|ref|ZP_14034085.1| GTPase family protein [Streptococcus pneumoniae GA47210]
gi|419498621|ref|ZP_14038323.1| GTPase family protein [Streptococcus pneumoniae GA47522]
gi|419500759|ref|ZP_14040450.1| GTPase family protein [Streptococcus pneumoniae GA47597]
gi|419500778|ref|ZP_14040467.1| GTPase family protein [Streptococcus pneumoniae GA47628]
gi|419509349|ref|ZP_14048997.1| GTPase family protein [Streptococcus pneumoniae GA49542]
gi|419511431|ref|ZP_14051069.1| GTPase family protein [Streptococcus pneumoniae NP141]
gi|419513632|ref|ZP_14053262.1| GTPase family protein [Streptococcus pneumoniae GA05578]
gi|419515740|ref|ZP_14055362.1| GTPase family protein [Streptococcus pneumoniae England14-9]
gi|419517845|ref|ZP_14057457.1| GTPase family protein [Streptococcus pneumoniae GA02506]
gi|419519969|ref|ZP_14059572.1| GTPase family protein [Streptococcus pneumoniae GA08825]
gi|419522200|ref|ZP_14061791.1| GTPase family protein [Streptococcus pneumoniae GA05245]
gi|419527006|ref|ZP_14066557.1| GTPase family protein [Streptococcus pneumoniae GA14373]
gi|419531131|ref|ZP_14070654.1| GTPase family protein [Streptococcus pneumoniae GA40028]
gi|419535754|ref|ZP_14075248.1| GTPase family protein [Streptococcus pneumoniae GA17457]
gi|421209948|ref|ZP_15666957.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070005]
gi|421212093|ref|ZP_15669070.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070035]
gi|421214231|ref|ZP_15671181.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070108]
gi|421216307|ref|ZP_15673224.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070109]
gi|421221447|ref|ZP_15678278.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070425]
gi|421223702|ref|ZP_15680479.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070531]
gi|421226107|ref|ZP_15682840.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070768]
gi|421228516|ref|ZP_15685209.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2072047]
gi|421232938|ref|ZP_15689574.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2080076]
gi|421235092|ref|ZP_15691706.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2061617]
gi|421241714|ref|ZP_15698255.1| GTP-binding protein [Streptococcus pneumoniae 2080913]
gi|421267235|ref|ZP_15718112.1| GTPase family protein [Streptococcus pneumoniae SPAR27]
gi|421269430|ref|ZP_15720292.1| GTPase family protein [Streptococcus pneumoniae SPAR95]
gi|421271723|ref|ZP_15722570.1| GTPase family protein [Streptococcus pneumoniae SPAR55]
gi|421280029|ref|ZP_15730832.1| GTPase family protein [Streptococcus pneumoniae GA17301]
gi|421282236|ref|ZP_15733029.1| hypothetical protein SPAR155_2247 [Streptococcus pneumoniae
GA04672]
gi|421284385|ref|ZP_15735167.1| hypothetical protein SPAR151_2206 [Streptococcus pneumoniae
GA04216]
gi|421286521|ref|ZP_15737292.1| hypothetical protein SPAR162_2205 [Streptococcus pneumoniae
GA60190]
gi|421286541|ref|ZP_15737309.1| hypothetical protein SPAR163_0004 [Streptococcus pneumoniae
GA58771]
gi|421290807|ref|ZP_15741554.1| hypothetical protein SPAR157_2215 [Streptococcus pneumoniae
GA54354]
gi|421295210|ref|ZP_15745928.1| hypothetical protein SPAR158_2284 [Streptococcus pneumoniae
GA56113]
gi|421296917|ref|ZP_15747620.1| hypothetical protein SPAR160_1684 [Streptococcus pneumoniae
GA58581]
gi|421299731|ref|ZP_15750404.1| hypothetical protein SPAR61_0037 [Streptococcus pneumoniae GA19998]
gi|421306203|ref|ZP_15756854.1| hypothetical protein SPAR169_2332 [Streptococcus pneumoniae
GA62331]
gi|421308463|ref|ZP_15759101.1| hypothetical protein SPAR166_2306 [Streptococcus pneumoniae
GA60132]
gi|421310649|ref|ZP_15761271.1| hypothetical protein SPAR168_2233 [Streptococcus pneumoniae
GA62681]
gi|15457532|gb|AAK98808.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076914|gb|ABJ54634.1| GTP-binding protein [Streptococcus pneumoniae D39]
gi|147762903|gb|EDK69851.1| GTP-binding protein [Streptococcus pneumoniae SP19-BS75]
gi|147923325|gb|EDK74439.1| translation-associated GTPase [Streptococcus pneumoniae SP3-BS71]
gi|147925719|gb|EDK76795.1| translation-associated GTPase [Streptococcus pneumoniae SP6-BS73]
gi|147927802|gb|EDK78824.1| GTP-binding protein [Streptococcus pneumoniae SP9-BS68]
gi|147930840|gb|EDK81821.1| translation-associated GTPase [Streptococcus pneumoniae SP23-BS72]
gi|168997031|gb|ACA37643.1| GTP-binding protein YchF [Streptococcus pneumoniae Hungary19A-6]
gi|172042448|gb|EDT50494.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC1873-00]
gi|183569891|gb|EDT90419.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC1087-00]
gi|183572250|gb|EDT92778.1| GTP-binding protein YchF [Streptococcus pneumoniae SP195]
gi|183574077|gb|EDT94605.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC0288-04]
gi|183575869|gb|EDT96397.1| GTP-binding protein YchF [Streptococcus pneumoniae CDC3059-06]
gi|220673412|emb|CAR67870.1| putative putative GTP-binding protein [Streptococcus pneumoniae
ATCC 700669]
gi|225723826|gb|ACO19679.1| GTP-binding protein YchF [Streptococcus pneumoniae JJA]
gi|225725903|gb|ACO21755.1| GTP-binding protein YchF [Streptococcus pneumoniae P1031]
gi|225726812|gb|ACO22663.1| GTP-binding protein YchF [Streptococcus pneumoniae Taiwan19F-14]
gi|301799153|emb|CBW31665.1| putative putative GTP-binding protein [Streptococcus pneumoniae
OXC141]
gi|301800977|emb|CBW33638.1| putative putative GTP-binding protein [Streptococcus pneumoniae
INV200]
gi|302598176|gb|EFL65237.1| translation-associated GTPase [Streptococcus pneumoniae BS455]
gi|302636837|gb|EFL67327.1| GTP-binding protein [Streptococcus pneumoniae SP14-BS292]
gi|302639282|gb|EFL69741.1| GTP-binding protein [Streptococcus pneumoniae SP-BS293]
gi|302641968|gb|EFL72321.1| GTP-binding protein [Streptococcus pneumoniae BS458]
gi|302644363|gb|EFL74616.1| GTP-binding protein [Streptococcus pneumoniae BS457]
gi|302645070|gb|EFL75310.1| GTP-binding protein [Streptococcus pneumoniae BS397]
gi|306483240|gb|ADM90109.1| GTP-binding protein YchF [Streptococcus pneumoniae 670-6B]
gi|307620571|gb|EFN99669.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
mitis SK597]
gi|327388989|gb|EGE87337.1| GTP-binding protein [Streptococcus pneumoniae GA04375]
gi|332071326|gb|EGI81821.1| GTP-binding protein [Streptococcus pneumoniae GA17545]
gi|332071707|gb|EGI82200.1| GTPase [Streptococcus pneumoniae GA17570]
gi|332077811|gb|EGI88270.1| GTP-binding conserved hypothetical domain protein [Streptococcus
pneumoniae GA41301]
gi|332198868|gb|EGJ12950.1| GTPase [Streptococcus pneumoniae GA47368]
gi|332199071|gb|EGJ13152.1| GTPase [Streptococcus pneumoniae GA47901]
gi|353745442|gb|EHD26112.1| GTPase family protein [Streptococcus pneumoniae 4027-06]
gi|353750225|gb|EHD30867.1| GTP-binding protein [Streptococcus pneumoniae 6735-05]
gi|353753619|gb|EHD34241.1| GTPase family protein [Streptococcus pneumoniae GA11184]
gi|353755431|gb|EHD36034.1| GTP-binding protein YchF [Streptococcus pneumoniae GA47033]
gi|353759624|gb|EHD40208.1| GTP-binding protein YchF [Streptococcus pneumoniae GA43265]
gi|353761053|gb|EHD41626.1| GTP-binding protein YchF [Streptococcus pneumoniae GA47281]
gi|353761535|gb|EHD42102.1| GTP-binding protein YchF [Streptococcus pneumoniae GA44452]
gi|353762588|gb|EHD43147.1| GTP-binding protein YchF [Streptococcus pneumoniae GA49138]
gi|353767804|gb|EHD48336.1| GTP-binding protein YchF [Streptococcus pneumoniae 6901-05]
gi|353773546|gb|EHD54043.1| GTP-binding protein YchF [Streptococcus pneumoniae NP070]
gi|353774350|gb|EHD54843.1| GTP-binding protein YchF [Streptococcus pneumoniae GA44500]
gi|353774468|gb|EHD54958.1| GTP-binding protein YchF [Streptococcus pneumoniae 7286-06]
gi|353775373|gb|EHD55854.1| GTP-binding protein YchF [Streptococcus pneumoniae GA41410]
gi|353780353|gb|EHD60812.1| GTPase family protein [Streptococcus pneumoniae GA49447]
gi|353781792|gb|EHD62233.1| GTPase family protein [Streptococcus pneumoniae GA41538]
gi|353783727|gb|EHD64154.1| GTPase family protein [Streptococcus pneumoniae 5787-06]
gi|353787135|gb|EHD67544.1| GTPase family protein [Streptococcus pneumoniae 6963-05]
gi|353788752|gb|EHD69148.1| GTPase family protein [Streptococcus pneumoniae GA18523]
gi|353794229|gb|EHD74587.1| GTPase family protein [Streptococcus pneumoniae GA44378]
gi|353794453|gb|EHD74810.1| GTPase family protein [Streptococcus pneumoniae GA44511]
gi|353796538|gb|EHD76878.1| GTPase family protein [Streptococcus pneumoniae NP170]
gi|353802494|gb|EHD82789.1| GTPase family protein [Streptococcus pneumoniae GA13455]
gi|353803940|gb|EHD84230.1| GTPase family protein [Streptococcus pneumoniae GA11304]
gi|353812082|gb|EHD92318.1| GTPase family protein [Streptococcus pneumoniae GA14798]
gi|353815356|gb|EHD95576.1| GTPase family protein [Streptococcus pneumoniae GA16121]
gi|353818404|gb|EHD98603.1| GTPase family protein [Streptococcus pneumoniae GA16242]
gi|353820259|gb|EHE00447.1| GTPase family protein [Streptococcus pneumoniae GA17227]
gi|353825492|gb|EHE05657.1| GTPase family protein [Streptococcus pneumoniae GA17328]
gi|353827351|gb|EHE07504.1| GTPase family protein [Streptococcus pneumoniae GA17371]
gi|353827657|gb|EHE07808.1| GTPase family protein [Streptococcus pneumoniae GA17971]
gi|353834767|gb|EHE14865.1| GTPase family protein [Streptococcus pneumoniae GA41277]
gi|353836085|gb|EHE16173.1| GTPase family protein [Streptococcus pneumoniae GA19077]
gi|353839026|gb|EHE19102.1| GTPase family protein [Streptococcus pneumoniae GA41437]
gi|353840299|gb|EHE20368.1| GTPase family protein [Streptococcus pneumoniae GA19451]
gi|353840907|gb|EHE20969.1| GTPase family protein [Streptococcus pneumoniae GA41565]
gi|353841331|gb|EHE21388.1| GTPase family protein [Streptococcus pneumoniae GA41688]
gi|353846611|gb|EHE26640.1| GTPase family protein [Streptococcus pneumoniae GA47283]
gi|353854543|gb|EHE34521.1| GTPase family protein [Streptococcus pneumoniae GA47388]
gi|353854937|gb|EHE34908.1| GTPase family protein [Streptococcus pneumoniae GA47439]
gi|353862616|gb|EHE42547.1| GTPase family protein [Streptococcus pneumoniae GA47976]
gi|353867761|gb|EHE47652.1| GTPase family protein [Streptococcus pneumoniae GA54644]
gi|353868380|gb|EHE48269.1| GTPase family protein [Streptococcus pneumoniae Netherlands15B-37]
gi|353872075|gb|EHE51944.1| GTPase family protein [Streptococcus pneumoniae NP127]
gi|353872698|gb|EHE52562.1| GTPase family protein [Streptococcus pneumoniae GA47751]
gi|353879054|gb|EHE58882.1| GTPase family protein [Streptococcus pneumoniae 3063-00]
gi|353879255|gb|EHE59082.1| GTPase family protein [Streptococcus pneumoniae NP112]
gi|353882894|gb|EHE62704.1| GTPase family protein [Streptococcus pneumoniae 5185-06]
gi|353884802|gb|EHE64597.1| GTPase family protein [Streptococcus pneumoniae GA07228]
gi|353885173|gb|EHE64963.1| GTPase family protein [Streptococcus pneumoniae GA08780]
gi|353890607|gb|EHE70369.1| GTPase family protein [Streptococcus pneumoniae GA19690]
gi|353890829|gb|EHE70589.1| GTPase family protein [Streptococcus pneumoniae NorthCarolina6A-23]
gi|353899719|gb|EHE75288.1| GTPase family protein [Streptococcus pneumoniae GA11663]
gi|353899878|gb|EHE75445.1| GTPase family protein [Streptococcus pneumoniae GA11426]
gi|353904434|gb|EHE79911.1| GTPase family protein [Streptococcus pneumoniae GA13338]
gi|379528961|gb|EHY94214.1| GTPase family protein [Streptococcus pneumoniae GA02270]
gi|379529129|gb|EHY94381.1| GTPase family protein [Streptococcus pneumoniae GA02714]
gi|379535503|gb|EHZ00705.1| GTPase family protein [Streptococcus pneumoniae GA13499]
gi|379535711|gb|EHZ00909.1| GTPase family protein [Streptococcus pneumoniae GA04175]
gi|379536187|gb|EHZ01378.1| GTPase family protein [Streptococcus pneumoniae GA05245]
gi|379542339|gb|EHZ07497.1| GTPase family protein [Streptococcus pneumoniae GA05248]
gi|379542758|gb|EHZ07913.1| GTPase family protein [Streptococcus pneumoniae GA06083]
gi|379549203|gb|EHZ14314.1| GTPase family protein [Streptococcus pneumoniae GA13224]
gi|379549401|gb|EHZ14511.1| GTPase family protein [Streptococcus pneumoniae GA13430]
gi|379555612|gb|EHZ20679.1| GTPase family protein [Streptococcus pneumoniae GA14373]
gi|379557354|gb|EHZ22400.1| GTPase family protein [Streptococcus pneumoniae GA14688]
gi|379561894|gb|EHZ26909.1| GTPase family protein [Streptococcus pneumoniae GA17457]
gi|379569226|gb|EHZ34200.1| GTPase family protein [Streptococcus pneumoniae GA19101]
gi|379569959|gb|EHZ34924.1| GTPase family protein [Streptococcus pneumoniae GA40028]
gi|379575114|gb|EHZ40051.1| GTPase family protein [Streptococcus pneumoniae GA40183]
gi|379580257|gb|EHZ45152.1| GTPase family protein [Streptococcus pneumoniae GA43257]
gi|379584297|gb|EHZ49165.1| GTPase family protein [Streptococcus pneumoniae GA43264]
gi|379584899|gb|EHZ49762.1| GTPase family protein [Streptococcus pneumoniae GA44386]
gi|379589255|gb|EHZ54095.1| GTPase family protein [Streptococcus pneumoniae GA44128]
gi|379591625|gb|EHZ56449.1| GTPase family protein [Streptococcus pneumoniae GA47210]
gi|379597685|gb|EHZ62483.1| GTPase family protein [Streptococcus pneumoniae GA47522]
gi|379597871|gb|EHZ62668.1| GTPase family protein [Streptococcus pneumoniae GA47597]
gi|379603963|gb|EHZ68728.1| GTPase family protein [Streptococcus pneumoniae GA47628]
gi|379609640|gb|EHZ74378.1| GTPase family protein [Streptococcus pneumoniae GA49542]
gi|379615885|gb|EHZ80589.1| GTPase family protein [Streptococcus pneumoniae 7879-04]
gi|379620111|gb|EHZ84775.1| GTPase family protein [Streptococcus pneumoniae 5652-06]
gi|379621395|gb|EHZ86043.1| GTPase family protein [Streptococcus pneumoniae EU-NP02]
gi|379626484|gb|EHZ91102.1| GTPase family protein [Streptococcus pneumoniae EU-NP04]
gi|379626675|gb|EHZ91292.1| GTPase family protein [Streptococcus pneumoniae EU-NP05]
gi|379630511|gb|EHZ95097.1| GTPase family protein [Streptococcus pneumoniae NP141]
gi|379632919|gb|EHZ97489.1| GTPase family protein [Streptococcus pneumoniae GA05578]
gi|379634056|gb|EHZ98622.1| GTPase family protein [Streptococcus pneumoniae England14-9]
gi|379637495|gb|EIA02051.1| GTPase family protein [Streptococcus pneumoniae GA02506]
gi|379638123|gb|EIA02669.1| GTPase family protein [Streptococcus pneumoniae GA08825]
gi|381309084|gb|EIC49927.1| GTPase family protein [Streptococcus pneumoniae SV36]
gi|381312655|gb|EIC53451.1| GTPase family protein [Streptococcus pneumoniae 459-5]
gi|381316389|gb|EIC57139.1| GTPase family protein [Streptococcus pneumoniae SV35]
gi|395571572|gb|EJG32191.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070035]
gi|395572118|gb|EJG32719.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070005]
gi|395577977|gb|EJG38506.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070108]
gi|395578696|gb|EJG39210.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070109]
gi|395584435|gb|EJG44828.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070425]
gi|395586161|gb|EJG46539.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070531]
gi|395587918|gb|EJG48257.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2070768]
gi|395592410|gb|EJG52681.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2072047]
gi|395593173|gb|EJG53425.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2080076]
gi|395599250|gb|EJG59430.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2061617]
gi|395605990|gb|EJG66101.1| GTP-binding protein [Streptococcus pneumoniae 2080913]
gi|395865620|gb|EJG76759.1| GTPase family protein [Streptococcus pneumoniae SPAR27]
gi|395866349|gb|EJG77480.1| GTPase family protein [Streptococcus pneumoniae SPAR95]
gi|395877257|gb|EJG88327.1| GTPase family protein [Streptococcus pneumoniae GA17301]
gi|395877282|gb|EJG88351.1| GTPase family protein [Streptococcus pneumoniae SPAR55]
gi|395878683|gb|EJG89746.1| hypothetical protein SPAR155_2247 [Streptococcus pneumoniae
GA04672]
gi|395879399|gb|EJG90459.1| hypothetical protein SPAR151_2206 [Streptococcus pneumoniae
GA04216]
gi|395884759|gb|EJG95795.1| hypothetical protein SPAR162_2205 [Streptococcus pneumoniae
GA60190]
gi|395885711|gb|EJG96733.1| hypothetical protein SPAR157_2215 [Streptococcus pneumoniae
GA54354]
gi|395891315|gb|EJH02315.1| hypothetical protein SPAR163_0004 [Streptococcus pneumoniae
GA58771]
gi|395891567|gb|EJH02562.1| hypothetical protein SPAR158_2284 [Streptococcus pneumoniae
GA56113]
gi|395892491|gb|EJH03481.1| hypothetical protein SPAR160_1684 [Streptococcus pneumoniae
GA58581]
gi|395902230|gb|EJH13165.1| hypothetical protein SPAR61_0037 [Streptococcus pneumoniae GA19998]
gi|395903887|gb|EJH14810.1| hypothetical protein SPAR169_2332 [Streptococcus pneumoniae
GA62331]
gi|395905266|gb|EJH16172.1| hypothetical protein SPAR166_2306 [Streptococcus pneumoniae
GA60132]
gi|395908264|gb|EJH19147.1| hypothetical protein SPAR168_2233 [Streptococcus pneumoniae
GA62681]
gi|404276816|emb|CCM07294.1| putative putative GTP-binding protein [Streptococcus pneumoniae
SPNA45]
gi|429317003|emb|CCP36735.1| putative putative GTP-binding protein [Streptococcus pneumoniae
SPN034156]
gi|429318535|emb|CCP31714.1| putative putative GTP-binding protein [Streptococcus pneumoniae
SPN034183]
gi|429320355|emb|CCP33699.1| putative putative GTP-binding protein [Streptococcus pneumoniae
SPN994039]
gi|429322175|emb|CCP29740.1| putative putative GTP-binding protein [Streptococcus pneumoniae
SPN994038]
Length = 371
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|450007608|ref|ZP_21827860.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NMT4863]
gi|449186143|gb|EMB87987.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NMT4863]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELII 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|23100935|ref|NP_694402.1| GTP-dependent nucleic acid-binding protein EngD [Oceanobacillus
iheyensis HTE831]
gi|22779170|dbj|BAC15436.1| GTP-binding protein [Oceanobacillus iheyensis HTE831]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 283/372 (76%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEAANYPFATIDPNVGIVEVPDERLNKLTELVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGN+FLSHIR+VD+I QVVRCFED +I HV+GKV
Sbjct: 60 PKKTVPTAFEFTDIAGIVKGASKGEGLGNQFLSHIRQVDAICQVVRCFEDENITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+++INLEL+ +DLD + KR +EKL + K KD+ AE+A L +++ L +
Sbjct: 120 DPIDDIEIINLELILADLDTVNKRYQRVEKLARQKDKDAV-----AEQAVLAIVKEGLEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KP R++ ++ + +K L LLT KP +YVANV+E ++ADP N +V +V A+D +
Sbjct: 175 DKPVRALEFSEDQWKIVKGLHLLTSKPTLYVANVSEDEVADPDGNEYVQKVKAHAADENA 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A++E E+ EL +EE+ E+L LG++ESGL LI+++Y+LLGL TYFT+GE+E +
Sbjct: 235 EVIIVCARIEEEIAELEAEEKEEFLEDLGIAESGLDQLIKASYNLLGLATYFTAGEQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R G+ APQAAG+IH+DFE+GFIRAETV+Y D V A ++ ARE+G +R EGK+YIV
Sbjct: 295 AWTFRKGIKAPQAAGIIHTDFERGFIRAETVSYTDLVEAENMTTARERGKVRLEGKEYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVIHFRFNV 366
>gi|422414329|ref|ZP_16491288.1| GTP-binding protein YchF [Listeria innocua FSL S4-378]
gi|313616512|gb|EFR89383.1| GTP-binding protein YchF [Listeria innocua FSL S4-378]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|386815304|ref|ZP_10102522.1| GTP-binding protein YchF [Thiothrix nivea DSM 5205]
gi|386419880|gb|EIJ33715.1| GTP-binding protein YchF [Thiothrix nivea DSM 5205]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G QAAN+PFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IQAANYPFCTIEPNVGIVPMPDPRLDALATIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GASQGEGLGNKFL+HIRE D+I QVVRCFE++DI+HV GK+
Sbjct: 60 PERIVPTTMEFVDIAGLVAGASQGEGLGNKFLAHIRETDAIAQVVRCFENDDIIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+D IN ELV +DL+ EK + +L + AK L A+KA E++ + L DG
Sbjct: 120 DPASDIDTINTELVLADLETAEKAVNRLTR-SAKSGDKDLV-AQKAMAERMYKHLSDGNS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARS+ + ER +++L L+T+KP++++ANV E + NP ++ V +A+ + V
Sbjct: 178 ARSLEMTPEERLLLRELHLITIKPLMFIANVNEDGFEN---NPFLDVVQEIAAREGAEVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +E EL++L ER E+LAS+G+ E GL +IR+ YSLLGL+TYFT+G KE +AWT
Sbjct: 235 PVCASIEEELSQLEDVERDEFLASMGLEEPGLNRVIRAGYSLLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+R TAPQAAGVIH+DFE+GFIRA+T+AYDDF+A A+E G +R+EGKDYIV++G
Sbjct: 295 VRKNATAPQAAGVIHTDFERGFIRAQTIAYDDFIAYRGEQGAKEAGKMRAEGKDYIVKDG 354
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 355 DVLNFLFNV 363
>gi|337282967|ref|YP_004622438.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 15912]
gi|387878543|ref|YP_006308846.1| hypothetical protein Spaf_0004 [Streptococcus parasanguinis FW213]
gi|419800801|ref|ZP_14326057.1| GTP-binding protein YchF [Streptococcus parasanguinis F0449]
gi|335370560|gb|AEH56510.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 15912]
gi|385693701|gb|EIG24334.1| GTP-binding protein YchF [Streptococcus parasanguinis F0449]
gi|386792001|gb|AFJ25036.1| hypothetical protein Spaf_0004 [Streptococcus parasanguinis FW213]
Length = 378
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/379 (53%), Positives = 274/379 (72%), Gaps = 6/379 (1%)
Query: 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHV 108
+ K M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL
Sbjct: 2 NGEKRKMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQK 60
Query: 109 LSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIV 168
L+ + +K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++
Sbjct: 61 LTEMITPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVM 120
Query: 169 HVNGK----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEK 224
G+ VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+K
Sbjct: 121 REQGREDAFVDPLADIDTINLELILADLESVNKRYARVEK-IARTQKDKDSVAEFNVLQK 179
Query: 225 IQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMN 284
I+ L DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ +
Sbjct: 180 IKPVLEDGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIDYVKQIRD 239
Query: 285 LASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFT 344
A+ + V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL TYFT
Sbjct: 240 FAATENAEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGLGTYFT 299
Query: 345 SGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRS 404
+GEKE +AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR
Sbjct: 300 AGEKEVRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLRE 359
Query: 405 EGKDYIVQEGDVMLFRFNV 423
EGK+Y+VQ+GD+M FRFNV
Sbjct: 360 EGKEYVVQDGDIMEFRFNV 378
>gi|290579530|ref|YP_003483922.1| GTP-binding protein [Streptococcus mutans NN2025]
gi|397648812|ref|YP_006489339.1| GTP-binding protein YchF [Streptococcus mutans GS-5]
gi|449876345|ref|ZP_21782746.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans S1B]
gi|449884130|ref|ZP_21785519.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SA38]
gi|449928553|ref|ZP_21801259.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 3SN1]
gi|449951655|ref|ZP_21808757.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11SSST2]
gi|449966080|ref|ZP_21812185.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 15VF2]
gi|449971149|ref|ZP_21814245.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 2VS1]
gi|449984976|ref|ZP_21819423.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NFSM2]
gi|449989394|ref|ZP_21821039.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NVAB]
gi|450002356|ref|ZP_21826031.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N29]
gi|450036042|ref|ZP_21835315.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M21]
gi|450051867|ref|ZP_21841059.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NFSM1]
gi|450057709|ref|ZP_21842701.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML4]
gi|450061436|ref|ZP_21843812.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML5]
gi|450068110|ref|ZP_21846986.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML9]
gi|450072978|ref|ZP_21848861.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M2A]
gi|450082954|ref|ZP_21852641.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N66]
gi|450088399|ref|ZP_21854776.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NV1996]
gi|450093119|ref|ZP_21856453.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans W6]
gi|450098035|ref|ZP_21857785.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF1]
gi|450107002|ref|ZP_21860799.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF14]
gi|450122316|ref|ZP_21866709.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans ST6]
gi|450125877|ref|ZP_21867867.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U2A]
gi|450145878|ref|ZP_21874789.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 1ID3]
gi|450150334|ref|ZP_21876537.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 14D]
gi|450161931|ref|ZP_21880713.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 66-2A]
gi|450167256|ref|ZP_21882580.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans B]
gi|450171415|ref|ZP_21883986.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM4]
gi|450174994|ref|ZP_21884925.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM1]
gi|450181532|ref|ZP_21887878.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 24]
gi|254996429|dbj|BAH87030.1| putative GTP-binding protein [Streptococcus mutans NN2025]
gi|392602381|gb|AFM80545.1| GTP-binding protein YchF [Streptococcus mutans GS-5]
gi|449148756|gb|EMB52597.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 1ID3]
gi|449165111|gb|EMB68135.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 3SN1]
gi|449165955|gb|EMB68918.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11SSST2]
gi|449170443|gb|EMB73152.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 15VF2]
gi|449172421|gb|EMB75048.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 2VS1]
gi|449179674|gb|EMB81871.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NFSM2]
gi|449182637|gb|EMB84653.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NVAB]
gi|449183263|gb|EMB85252.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N29]
gi|449194666|gb|EMB96014.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M21]
gi|449201464|gb|EMC02460.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NFSM1]
gi|449204885|gb|EMC05663.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML4]
gi|449207211|gb|EMC07890.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML5]
gi|449207495|gb|EMC08169.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML9]
gi|449210550|gb|EMC11003.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M2A]
gi|449214051|gb|EMC14365.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N66]
gi|449216586|gb|EMC16691.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NV1996]
gi|449217480|gb|EMC17530.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans W6]
gi|449221912|gb|EMC21662.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF1]
gi|449222573|gb|EMC22296.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF14]
gi|449228027|gb|EMC27415.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans ST6]
gi|449232002|gb|EMC31145.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U2A]
gi|449233746|gb|EMC32802.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 14D]
gi|449237983|gb|EMC36774.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 66-2A]
gi|449238672|gb|EMC37425.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans B]
gi|449244072|gb|EMC42462.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM4]
gi|449246268|gb|EMC44578.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 24]
gi|449247603|gb|EMC45878.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SM1]
gi|449249282|gb|EMC47421.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SA38]
gi|449252549|gb|EMC50525.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans S1B]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|421541140|ref|ZP_15987270.1| putative GTP-binding protein [Neisseria meningitidis 93004]
gi|402315933|gb|EJU51487.1| putative GTP-binding protein [Neisseria meningitidis 93004]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDHLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|148358611|ref|YP_001249818.1| GTP-dependent nucleic acid-binding protein [Legionella pneumophila
str. Corby]
gi|296108299|ref|YP_003620000.1| GTP binding protein [Legionella pneumophila 2300/99 Alcoy]
gi|148280384|gb|ABQ54472.1| GTP-dependent nucleic acid-binding protein [Legionella pneumophila
str. Corby]
gi|295650201|gb|ADG26048.1| GTP binding protein [Legionella pneumophila 2300/99 Alcoy]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AAN+PFCTIEPNVGIV VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANYPFCTIEPNVGIVTVPDSRLDNLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ + A+++FVDIAGLVKGAS GEGLGN+FL++IRE D+I VVRCF+++D+VHV G+V
Sbjct: 60 PQQVIHATMQFVDIAGLVKGASSGEGLGNQFLANIRETDAIAHVVRCFDNSDVVHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +D++ +EK + LK GK S +K E LEKI+ L G P
Sbjct: 120 DPLSDIEVINTELALADMETLEKSL--LKVGKNSKSGNKEAIFELKTLEKIKAHLDTGYP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L E K+L LLT KP++Y+ANV ++ + NP +++V LAS + V
Sbjct: 178 VRTLELTPEEEQVSKRLFLLTAKPVLYIANVDDNGYEN---NPLLDKVKALASQENASIV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A EAEL EL E+R E++ LG+SE GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 ALCAATEAELVELDEEDRQEFMVDLGLSEPGLNKVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G TAPQAAGVIH+DFEKGFIRAE ++Y+DF+ G A+E G LR EGK+YIV +G
Sbjct: 295 IRKGATAPQAAGVIHTDFEKGFIRAEVISYEDFIRFGGEQGAKEAGKLRLEGKEYIVCDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|365093248|ref|ZP_09330315.1| GTP-binding protein YchF [Acidovorax sp. NO-1]
gi|363414631|gb|EHL21779.1| GTP-binding protein YchF [Acidovorax sp. NO-1]
Length = 364
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/371 (54%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV GKV
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +D+ +EK + + K AK KDA K A L +IQ AL +G
Sbjct: 120 DPISDIEVIQTELCLADMGTVEKALNRYTKA-AKSGND--KDAAKLVALLTRIQAALNEG 176
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 177 KPARSVEVTKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNAP 233
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +A
Sbjct: 234 VVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVRA 293
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH DFE+GFIRA+T+A+DDF+A A++ G +R+EGK+Y+V+
Sbjct: 294 WTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFDDFIAYKGEQGAKDAGKMRAEGKEYVVK 353
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 354 DGDVLNFLFNV 364
>gi|15899953|ref|NP_344557.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae TIGR4]
gi|111658626|ref|ZP_01409276.1| hypothetical protein SpneT_02000216 [Streptococcus pneumoniae
TIGR4]
gi|225857813|ref|YP_002739323.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae 70585]
gi|418131415|ref|ZP_12768295.1| GTPase family protein [Streptococcus pneumoniae GA07643]
gi|418188243|ref|ZP_12824761.1| GTPase family protein [Streptococcus pneumoniae GA47360]
gi|418231081|ref|ZP_12857675.1| GTPase family protein [Streptococcus pneumoniae EU-NP01]
gi|419478905|ref|ZP_14018724.1| GTPase family protein [Streptococcus pneumoniae GA18068]
gi|421244022|ref|ZP_15700531.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2081074]
gi|421246441|ref|ZP_15702931.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2082170]
gi|421271687|ref|ZP_15722537.1| GTPase family protein [Streptococcus pneumoniae SPAR48]
gi|14971468|gb|AAK74197.1| GTP-binding protein [Streptococcus pneumoniae TIGR4]
gi|225721677|gb|ACO17531.1| GTP-binding protein YchF [Streptococcus pneumoniae 70585]
gi|353800830|gb|EHD81139.1| GTPase family protein [Streptococcus pneumoniae GA07643]
gi|353848052|gb|EHE28071.1| GTPase family protein [Streptococcus pneumoniae GA47360]
gi|353884391|gb|EHE64191.1| GTPase family protein [Streptococcus pneumoniae EU-NP01]
gi|379563177|gb|EHZ28182.1| GTPase family protein [Streptococcus pneumoniae GA18068]
gi|395605698|gb|EJG65817.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2081074]
gi|395616051|gb|EJG76064.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2082170]
gi|395865826|gb|EJG76964.1| GTPase family protein [Streptococcus pneumoniae SPAR48]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELNDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|406838987|ref|ZP_11098581.1| GTP-binding protein YchF [Lactobacillus vini DSM 20605]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 268/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDQRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HVN KV
Sbjct: 60 AKKIIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVNNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++ INLEL +DLD I KR K++K + KD + AE A L+KI+ L GK
Sbjct: 120 DPLDDIETINLELTVADLDSINKRYAKVEKVARTKDKAAM---AEFAILKKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ + E+ +K L LLT KP++YVAN+AE+D+ADP +V ++ A SG
Sbjct: 177 PVRSLDFAEDEQKIVKGLFLLTSKPVLYVANIAEADMADPLKCKYVQQIKQYADSEGSGM 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A+ E E+ +L +++ E+L + GV ESGL LI+++Y LLGL T+FT+G KET+AW
Sbjct: 237 LAVCAKTEEEIAQLDDDDKQEFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T GM APQ AG+IHSDFE+GFIRAETV++ D GSLAA RE G LR EGKDY+VQ+
Sbjct: 297 TFHQGMKAPQVAGIIHSDFERGFIRAETVSFTDLDKYGSLAAVREAGKLRLEGKDYLVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|187930207|ref|YP_001900694.1| GTP-dependent nucleic acid-binding protein EngD [Ralstonia
pickettii 12J]
gi|187727097|gb|ACD28262.1| GTP-binding protein YchF [Ralstonia pickettii 12J]
Length = 364
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 263/369 (71%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPD RL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDARLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GKV
Sbjct: 60 PERVLPAVVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++VIN EL +DL +EK +++ K AK K A LEK Q+ L + KP
Sbjct: 120 DPIADIEVINTELALADLATVEKALQRYTKA-AKSGNDKEAAKLVAVLEKAQKVLDEAKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R + L D E +IK LCL+T KP +YVANV E + NPH++ V N A+ S V
Sbjct: 179 VRGLNLTDDEWATIKPLCLITAKPTMYVANVREDGFEN---NPHLDAVRNYAAQTNSPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L ++ E+LA +G+ E GL +IR+ + LLGL+TYFT+G KE +AWT
Sbjct: 236 AVCAAIEAEIADLDDADKAEFLADIGMDEPGLNRVIRAAFKLLGLQTYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP+AA IH+DFE+GFIRA+T++YDDF+ A+E G +R+EGK+YIV++G
Sbjct: 296 IHIGDTAPRAAAAIHTDFERGFIRAQTISYDDFIQYKGEQGAKEAGKMRAEGKEYIVKDG 355
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 356 DVLHFLFNV 364
>gi|416207687|ref|ZP_11620993.1| GTP-binding protein EngD [Neisseria meningitidis 961-5945]
gi|325141641|gb|EGC64103.1| GTP-binding protein EngD [Neisseria meningitidis 961-5945]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|333375790|ref|ZP_08467590.1| GTP-dependent nucleic acid-binding protein EngD [Kingella kingae
ATCC 23330]
gi|332969578|gb|EGK08596.1| GTP-dependent nucleic acid-binding protein EngD [Kingella kingae
ATCC 23330]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 273/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + L++GK ++S KDA+K A LEK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--LREGKR--AKSGDKDAQKLVAILEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R+ L+ E IK L LLT KP +YV NVAE + N H+ + LA+ +
Sbjct: 176 KPVRAFGLDKEEMALIKPLFLLTAKPAMYVGNVAEDGFEN---NSHLARLQELAARENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL E+VE+LA +G++E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAALESEIAELDDAEKVEFLAEMGLAEPGLNRLIRAGYDLLGLQTYFTAGVKEIRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G +R+EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAGKMRAEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVIHFLFNV 363
>gi|78484740|ref|YP_390665.1| GTP-dependent nucleic acid-binding protein EngD [Thiomicrospira
crunogena XCL-2]
gi|78363026|gb|ABB40991.1| GTP-binding protein, HSR1-related [Thiomicrospira crunogena XCL-2]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 275/370 (74%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ N ++AN+PFCTIEPNVG+V VPDPR L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALT-NAGIESANYPFCTIEPNVGVVPVPDPREQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + A+V+F+DIAGLV+GAS+GEGLGNKFL++IRE D+I+QVVRCFE++DIVHV GKV
Sbjct: 60 PERILSATVDFMDIAGLVEGASKGEGLGNKFLANIRETDAIVQVVRCFENDDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD+++IN+EL+ +D++ +EK ++K ++ K+ D ++ A++A EK+ + + GK
Sbjct: 120 DPLSDIEIINMELILADMESLEKAVQKVIRVAKSGDKEAL---AKQALYEKVLKEVEGGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R V L D ER ++ L LLT+KP++Y+ANV E + NP+++ V +A + +
Sbjct: 177 LVRLVELTDDERKMLQDLHLLTIKPMMYIANVNEDGFEN---NPYLDAVQKVAEEQGAIV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA++E ++ EL E++ E+LA +G E GL LIR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VPISAEIEEQVAELDEEDKAEFLAEMGQEEPGLNRLIRAAYELLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAPQAAGVIH+DFEKGFIRAE AYDDF+ A A+ G R EGK+YIV++
Sbjct: 294 TVKKGATAPQAAGVIHTDFEKGFIRAEVTAYDDFIEYKGDAGAKAAGKQRLEGKEYIVKD 353
Query: 414 GDVMLFRFNV 423
GDVM FRFNV
Sbjct: 354 GDVMHFRFNV 363
>gi|322390528|ref|ZP_08064046.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 903]
gi|417938717|ref|ZP_12582011.1| GTP-binding protein YchF [Streptococcus infantis SK970]
gi|321142802|gb|EFX38262.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
parasanguinis ATCC 903]
gi|343390732|gb|EGV03311.1| GTP-binding protein YchF [Streptococcus infantis SK970]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-IARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 179 DGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|312865808|ref|ZP_07726030.1| GTP-binding protein YchF [Streptococcus downei F0415]
gi|311098683|gb|EFQ56905.1| GTP-binding protein YchF [Streptococcus downei F0415]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLEKLTQLIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ ++ E +K L LL+ KP++YVANV E +A+P S +V ++ + A
Sbjct: 179 DGKSARTIDFSEEEDKIVKSLFLLSTKPVLYVANVNEEQVANPDSIDYVKQIRDFAVTEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKGEFLEAMGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD V GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLVTYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|419441446|ref|ZP_13981486.1| GTPase family protein [Streptococcus pneumoniae GA40410]
gi|379576103|gb|EHZ41032.1| GTPase family protein [Streptococcus pneumoniae GA40410]
Length = 371
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ +VR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHIVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|323142933|ref|ZP_08077643.1| GTP-binding protein YchF [Succinatimonas hippei YIT 12066]
gi|322417286|gb|EFY07910.1| GTP-binding protein YchF [Succinatimonas hippei YIT 12066]
Length = 365
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A A NFPFCTIEPN GIV VPD RL ++ +
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIA-AENFPFCTIEPNTGIVPVPDERLDKIAAIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAGLVKGAS+GEGLGN+FL +IRE D+I VVRCF+D +++HVNGKV
Sbjct: 60 PQKIVPTAMEFVDIAGLVKGASKGEGLGNQFLMNIRETDAIAHVVRCFDDPNVIHVNGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SDV++IN EL +DLD +K +++L+K +A+ K A+ ALEK + AL +GK
Sbjct: 120 DPISDVEIINTELALADLDVCDKALQRLEK-RARTGGDKEALAQVVALEKCKPALEEGKM 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R ++ + +++ LT+KP++Y+ANV+E D NP++ ++ + A+ S V
Sbjct: 179 LRQISFTKEDLHALRGFNFLTLKPVMYIANVSEDGFTD---NPYLTKLEDYAAKENSIVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA +EA+L + E+R E++ SLG+SE GL +IR+ Y LLGL+T+FT+G KE +AWT
Sbjct: 236 PVSAAIEADLASMEPEDRKEFMDSLGISEPGLNRVIRAGYKLLGLQTFFTAGPKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAG IHSDFE+GFIRA+T+AYDDF+ G A+E G LRSEGKDYIVQ+G
Sbjct: 296 VKVGATAPQAAGKIHSDFERGFIRAQTIAYDDFIKYGGENGAKEAGKLRSEGKDYIVQDG 355
Query: 415 DVMLFRFNV 423
D+ F FNV
Sbjct: 356 DLFEFLFNV 364
>gi|297585579|ref|YP_003701359.1| GTP-binding protein YchF [Bacillus selenitireducens MLS10]
gi|297144036|gb|ADI00794.1| GTP-binding protein YchF [Bacillus selenitireducens MLS10]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 275/371 (74%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PNVGIV VPDPRL L+ +
Sbjct: 1 MALTTGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNVGIVEVPDPRLDKLTQMVV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
K VP + EF DIAG+V+GAS+GEGLGN+FLSHIR+VD+I VVRCF D++I HV+G V
Sbjct: 60 PDKTVPTAFEFTDIAGIVEGASKGEGLGNQFLSHIRQVDAISHVVRCFSDDNITHVSGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA--EKAALEKIQQALMDG 232
DP D+ VINLEL+ +D++ +EKR+ K++K ++ K KDA E L K+++A D
Sbjct: 120 DPIRDIQVINLELILADMESVEKRIGKVEKM----ARQKDKDAVFEYDVLVKLREAFEDE 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARS+ + + + LLTMKP++YVANV E ++ D N HV +V A + S
Sbjct: 176 KPARSIDFTKEQAKLVHGMHLLTMKPVLYVANVGEDEILDIDGNEHVQKVRAFAEEENSE 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ ISA++E E+ EL EE+ E+L LG++ESGL LI++ Y+LLGL T+FT+G++E +A
Sbjct: 236 VIVISAKIEEEIAELEGEEKQEFLDDLGIAESGLDQLIKAAYNLLGLDTFFTAGKQEVRA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTIR G APQAAGVIH+DFE+GFIRAE V+Y+D AGS+ AA+E G +R EGKDY+++
Sbjct: 296 WTIRRGTKAPQAAGVIHTDFERGFIRAEVVSYEDLTDAGSMNAAKEAGNVRLEGKDYVMK 355
Query: 413 EGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 356 DGDVVHFRFNV 366
>gi|154505933|ref|ZP_02042671.1| hypothetical protein RUMGNA_03475 [Ruminococcus gnavus ATCC 29149]
gi|336432647|ref|ZP_08612478.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 2_1_58FAA]
gi|153793951|gb|EDN76371.1| GTP-binding protein YchF [Ruminococcus gnavus ATCC 29149]
gi|336017929|gb|EGN47682.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 2_1_58FAA]
Length = 365
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 281/369 (76%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDHRLDVLGEMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KITPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K+ K +++ ++ K+ E L++I++ L + K A+
Sbjct: 120 LRDIETINLELIFSDLEILERRIAKVVK-LSRNDKTAAKELE--LLKRIKEHLEENKMAK 176
Query: 237 SVTLND-FERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
S T +D E++ + LLT KP+I+ ANV E DLA+ G+ N V +V A++
Sbjct: 177 SFTTDDEEEQEWLTSYNLLTYKPVIFAANVTEDDLANDGADNAGVQKVREYAAEENCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E+ EL +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE+E +AWT
Sbjct: 237 VVCAQIEQEIAELDEDEKKLFLDDLGLEESGLEKLIKASYHLLGLISYLTAGEQECRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G APQAAG IH+DFE+GFIRAE V+YDD +A G+ AAA+EKGL+R EGK+Y+VQ+G
Sbjct: 297 ITKGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMACGTHAAAKEKGLVRLEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
D+++FRFNV
Sbjct: 357 DIIVFRFNV 365
>gi|291536605|emb|CBL09717.1| GTP-binding protein YchF [Roseburia intestinalis M50/1]
gi|291541051|emb|CBL14162.1| GTP-binding protein YchF [Roseburia intestinalis XB6B4]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 276/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K+ E +E +++ L DGK AR
Sbjct: 120 ARDIETINLELIFSDIEILDRRISKIAK-QARMDKTLAKELE--LVEAVKKHLEDGKMAR 176
Query: 237 SVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
+ + D + I K LLT KP IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 177 TFEVPDDDDAQIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I AQ+E EL EL +E+ EYL LGV SGL L+ ++YSLLGL ++ T+GE E +AW
Sbjct: 237 FVICAQIEQELAELDEDEKKEYLEDLGVESSGLDKLVAASYSLLGLISFLTAGEDECRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GSL+AAREKG++ EGKDY+V++
Sbjct: 297 TIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLSAAREKGIVGMEGKDYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVILFRFNV 366
>gi|296114648|ref|ZP_06833301.1| GTP-dependent nucleic acid-binding protein EngD [Gluconacetobacter
hansenii ATCC 23769]
gi|295979004|gb|EFG85729.1| GTP-dependent nucleic acid-binding protein EngD [Gluconacetobacter
hansenii ATCC 23769]
Length = 364
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 269/370 (72%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETASAQAANYPFCTIEPNVGRVAVPDPRLAELARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKILPTSLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D ++I EL+ +DL+ +EKR+ L KK + D ++ A+ +E + AL +G+
Sbjct: 121 DPLRDAEIIETELMLADLESLEKRIVALQKKARGNDREAA---AQVELMEPLIAALREGQ 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ + + +++++L L+T KP++YV NV E A N ++V A +
Sbjct: 178 PART-AIPAGQEEAVRRLNLMTSKPVLYVCNVDEGSAAT--GNAFSDKVRARAEAEGAAV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE+++L +E+R E+L LG+S+SGL +I + Y LLGL TYFT G KET+AW
Sbjct: 235 VIVSAAIEAEVSQLGAEDRAEFLDGLGLSDSGLDRVIAAGYRLLGLSTYFTVGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AGM APQAA VIH+DFE+GFI ETVAYDD++ A A+E G LR EG+DY+VQ+
Sbjct: 295 TITAGMRAPQAAAVIHNDFERGFIACETVAYDDYIQCNGEAGAKEAGKLRIEGRDYVVQD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVLLFRFNV 364
>gi|220933715|ref|YP_002512614.1| GTP-dependent nucleic acid-binding protein EngD [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219995025|gb|ACL71627.1| GTP-binding protein YchF [Thioalkalivibrio sulfidophilus HL-EbGr7]
Length = 363
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 265/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ G QA N+PFCTI+PNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTRAG-IQAENYPFCTIDPNVGVVPVPDPRLDALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P ++EFVDIAGLV GASQGEGLGN+FL+HIRE D+I VVRCFE++D++HV G+V
Sbjct: 60 PEKLIPTAMEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIAHVVRCFENDDVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD++VIN EL +DL+ +EK + +L ++ S K A K EK+Q L +GK
Sbjct: 120 DPLSDIEVINTELALADLETVEKALNRLT--RSAKSGDKEAVARKNVAEKVQAVLAEGKA 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR+ L+D ER +++ L+T KP +Y+ANV E + NP ++ V A+ + V
Sbjct: 178 ARAADLDDEERKLLREFHLITAKPAMYIANVNEDGFEN---NPLLDRVREYAAAEHAQVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L +E+ E+LA +G+ E GL +IR+ Y LLGL+T+FT+G KE +AWT
Sbjct: 235 PVCAAIEAEIAQLEDDEKTEFLAEMGLDEPGLNRVIRAAYELLGLQTFFTAGPKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAP+AA VIH+DFEKGFIRAE V Y+DF+A A++ G R EGK+Y+++EG
Sbjct: 295 VKRGATAPKAAAVIHTDFEKGFIRAEVVGYEDFIAGKGEQGAKDAGKWRLEGKEYVMKEG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVVHFRFNV 363
>gi|313885419|ref|ZP_07819169.1| GTP-binding protein YchF [Eremococcus coleocola ACS-139-V-Col8]
gi|312619149|gb|EFR30588.1| GTP-binding protein YchF [Eremococcus coleocola ACS-139-V-Col8]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 270/373 (72%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G +AAN+PF TI+PNVG+V VPD RL ++ +
Sbjct: 1 MPLTAGIVGLPNVGKSTLFNAITKAG-VEAANYPFATIDPNVGVVEVPDKRLDDITKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K V + EF DIAG+VKGAS+GEGLGNKFLS+IR+VD+I VVRCFED +I HV+GKV
Sbjct: 60 PKKTVATTFEFTDIAGIVKGASKGEGLGNKFLSNIRQVDAICHVVRCFEDGNITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAA----LEKIQQALM 230
DP SD++ INLEL+ +DL+ I+KR+ +++K Q+K KDAE A L K++ L
Sbjct: 120 DPISDIETINLELILADLESIDKRIGRVEK------QAKTKDAEAMAELEVLTKLKAGLE 173
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+ A ++ + ++ L LLT K ++YVAN+ E ++ADP +NP + +V LA+
Sbjct: 174 ANQMANALEFTKEQEPIVRNLFLLTRKKMLYVANIGEEEVADPSANPFLAQVQELAASQG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V + A +E E+ L +E+ +L G+ ESGL LI++TY LLGL TYFT+GE+E
Sbjct: 234 AEVVPVCASLEEEIAVLDDQEKAAFLEDFGMPESGLDRLIQATYHLLGLGTYFTAGEQEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IH+DFE+GFIRAET+ YDD +A GS+ AA+E G RSEGK+Y+
Sbjct: 294 RAWTFKQGMKAPQAAGIIHTDFERGFIRAETLHYDDLMAYGSVQAAKEAGHYRSEGKEYV 353
Query: 411 VQEGDVMLFRFNV 423
V++GD+MLFRFNV
Sbjct: 354 VKDGDIMLFRFNV 366
>gi|365925854|ref|ZP_09448617.1| GTP-binding protein YchF [Lactobacillus mali KCTC 3596 = DSM 20444]
Length = 366
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 268/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ N A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAIT-NAGAEMANYPFATIDPNVGMVEVPDQRLARIDELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I HV+ KV
Sbjct: 60 AKKIIRTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D INLEL +DL+ I KR +++K + KD ++ AE L+KI+ L GK
Sbjct: 120 DPLDDIDTINLELTLADLESINKRYARVEKVARTKDKEAV---AEFNVLKKIKPVLEAGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ + E+ +K L LLT KP++YVAN+AE D+ADP SN +V ++ A + S
Sbjct: 177 PVRSLEFEEEEQKIVKGLFLLTSKPVLYVANIAEEDMADPSSNSYVQQIQKFAEEEGSQM 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +SA+ E E+ +L ++ ++L + GV ESGL LI++ Y LLGL T+FT+G KET+AW
Sbjct: 237 LAVSAKTEEEIAQLDDADKKDFLEAEGVEESGLDRLIKAAYKLLGLATFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFE+GFIRAET +++D GS+ A RE G LRSEGK+Y++Q+
Sbjct: 297 TFKQGMKAPQVAGIIHSDFERGFIRAETFSFEDLDQYGSVTAVREAGRLRSEGKEYVIQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|261855771|ref|YP_003263054.1| GTP-binding protein YchF [Halothiobacillus neapolitanus c2]
gi|261836240|gb|ACX96007.1| GTP-binding protein YchF [Halothiobacillus neapolitanus c2]
Length = 364
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 271/369 (73%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + QA N+PFCTIEPNVGIVA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTK-ANIQAENYPFCTIEPNVGIVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I QVVRCF+++DI+HV GKV
Sbjct: 60 PERVLPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETDAIAQVVRCFDNDDIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+D+IN ELV +DLD + + +++ K +K +K A KA LEKI L + KP
Sbjct: 120 DPLSDIDIINTELVLADLDIVTRNLDRAIKA-SKSGVNKEAIARKAVLEKIMVGLNEVKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L+ E I+ L LLT+KPI+Y+ANV+E + NP++ V A+ + V
Sbjct: 179 VRALGLSSEELAVIRDLQLLTVKPIMYIANVSEDGFTN---NPYLEAVEAHAAKENAPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L E+R E+L+ +G SE GL +IR+ Y+LLGL+TYFT+G KE +AWT
Sbjct: 236 PVCATIEAEIMQLDDEDRDEFLSEIGQSEPGLNRVIRAGYALLGLQTYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIH+DFE+GFIRA+T+AYDDF+ A+E G +R+EGK+YIV++G
Sbjct: 296 IHKGDTAPQAAGVIHTDFERGFIRAQTIAYDDFILYKGEQGAKEAGKMRAEGKEYIVKDG 355
Query: 415 DVMLFRFNV 423
D++ F FNV
Sbjct: 356 DILNFLFNV 364
>gi|24378536|ref|NP_720491.1| GTP-binding protein YchF [Streptococcus mutans UA159]
gi|24376384|gb|AAN57797.1|AE014853_4 putative GTP-binding protein [Streptococcus mutans UA159]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IRE+D+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREIDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|334132964|ref|ZP_08506719.1| GTP-dependent nucleic acid-binding protein EngD [Methyloversatilis
universalis FAM5]
gi|333441874|gb|EGK69846.1| GTP-dependent nucleic acid-binding protein EngD [Methyloversatilis
universalis FAM5]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPDPRL LS + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDPRLAQLSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHVNG+V
Sbjct: 60 PQKIQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDENVVHVNGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +E+ + + K ++S KDA+K A LEK+ L +G
Sbjct: 120 DPIADIETIVTELALADLAAVERTIAR----DGKKAKSGDKDAQKLVAVLEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR++ L+D ++ IK LCLLT+KP +YV NV E + NP+++ + A+ +
Sbjct: 176 KPARTLGLSDDDKVIIKPLCLLTIKPAMYVGNVLEDGFEN---NPYLDRLREFAAKEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V++ A++EAEL +L E++ +LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVSVCAKIEAELADLEDEDKKAFLADLGLDEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+A++DF+A A+E G +R+EGK+Y+V+
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQTIAFEDFIAYKGEQGAKEAGKMRAEGKEYVVR 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVLNFLFNV 363
>gi|338708193|ref|YP_004662394.1| GTP-binding protein YchF [Zymomonas mobilis subsp. pomaceae ATCC
29192]
gi|336294997|gb|AEI38104.1| GTP-binding protein YchF [Zymomonas mobilis subsp. pomaceae ATCC
29192]
Length = 366
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 260/371 (70%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL ++ ++
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGQVAVPDPRLDQIAKIAH 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ V + FVDIAGLV+GAS+GEGLGN+FL HIREVD+I+ V+RCFED+DI HV GKV
Sbjct: 61 SQRIVETQLGFVDIAGLVRGASKGEGLGNQFLGHIREVDAIVHVLRCFEDDDITHVEGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D ++I EL+ +DL+ +EKR+ L KK + D ++K A + L + + L DGK
Sbjct: 121 DPLADAEIIETELLLADLESLEKRVPNLQKKAQGGDKEAK---AAASVLGQALELLRDGK 177
Query: 234 PARSVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR D E Q L+T KPI+YV NV E A+ N ++ A S
Sbjct: 178 PARLTKPKDVDEERHFAQAQLITAKPILYVCNVDEGSAAE--GNEFSAKIFERAKAEGSR 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
VT+SA +EAE+ + EER +L+ LG+ E+GLG +IR+ Y LL L T+FT G KE +A
Sbjct: 236 AVTVSAAIEAEIATMEPEERTAFLSDLGLKETGLGRIIRAGYELLDLITFFTVGPKEARA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT+ G APQAAGVIH+DFE+GFIRAET+A+DD+VA A AR+ G LR EGK+YIV
Sbjct: 296 WTVTKGSKAPQAAGVIHTDFERGFIRAETIAFDDYVACEGEAGARDAGKLRQEGKEYIVN 355
Query: 413 EGDVMLFRFNV 423
+GD+MLFRFNV
Sbjct: 356 DGDIMLFRFNV 366
>gi|306834604|ref|ZP_07467716.1| GTP-binding protein YchF [Streptococcus bovis ATCC 700338]
gi|336063377|ref|YP_004558236.1| putative GTPase [Streptococcus pasteurianus ATCC 43144]
gi|304423240|gb|EFM26394.1| GTP-binding protein YchF [Streptococcus bovis ATCC 700338]
gi|334281577|dbj|BAK29150.1| putative GTPase [Streptococcus pasteurianus ATCC 43144]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE + L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSIAEFSVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V + E+ +KQL LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTVDFTEEEQKIVKQLFLLTTKPVLYVANVDEDKVANPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKALFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAITMSYDDLINYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|345876540|ref|ZP_08828308.1| GTP-binding and nucleic acid-binding protein YchF [endosymbiont of
Riftia pachyptila (vent Ph05)]
gi|344226507|gb|EGV52842.1| GTP-binding and nucleic acid-binding protein YchF [endosymbiont of
Riftia pachyptila (vent Ph05)]
Length = 389
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 275/370 (74%), Gaps = 6/370 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL ++G+
Sbjct: 26 NMGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDAIAGIV 84
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
Q +P +++FVDIAGLV+GAS+GEGLGNKFL++IRE D++ QVVRCFE++D+VHV GK
Sbjct: 85 NPQAVLPTTMQFVDIAGLVEGASKGEGLGNKFLANIRETDAVAQVVRCFENDDVVHVAGK 144
Query: 174 VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+DP +DV VIN EL +DL+ +EK ++K + +AK K+ A KA LE+I+ L DGK
Sbjct: 145 IDPLADVQVINNELALADLESVEKALDKTIR-QAKTGDKKVL-ARKALLERIRDHLYDGK 202
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
RS+ L+D E I++L LLT+KPI+Y+ANVAE D NPH++ + LAS +
Sbjct: 203 SVRSMALSDDELQEIRELFLLTVKPILYIANVAEDGFED---NPHLDALNTLASAEGAEV 259
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V++ A +EAE+ EL +ER E+L+ LG+ E GL ++R+ Y LLGL TYFT+GEKE +AW
Sbjct: 260 VSVCAAIEAEIVELEEDEREEFLSDLGLDEPGLNRVVRAGYQLLGLETYFTAGEKEVRAW 319
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI A +APQAAGVIH+DFE+GFIRAE ++YDDFV ARE G LRSEGKDY V++
Sbjct: 320 TIPANASAPQAAGVIHTDFERGFIRAEVISYDDFVKFRGEQGAREAGKLRSEGKDYQVKD 379
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 380 GDIIHFRFNV 389
>gi|419767438|ref|ZP_14293593.1| GTP-binding protein YchF [Streptococcus mitis SK579]
gi|383353178|gb|EID30803.1| GTP-binding protein YchF [Streptococcus mitis SK579]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K E L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVEEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E ++DP S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSDPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|15677674|ref|NP_274835.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis MC58]
gi|218767578|ref|YP_002342090.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis Z2491]
gi|385339416|ref|YP_005893288.1| GTP-binding protein EngD [Neisseria meningitidis G2136]
gi|385853894|ref|YP_005900408.1| GTP-binding protein EngD [Neisseria meningitidis H44/76]
gi|416198501|ref|ZP_11618977.1| GTP-binding protein EngD [Neisseria meningitidis CU385]
gi|421561864|ref|ZP_16007701.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM2657]
gi|427827764|ref|ZP_18994788.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis H44/76]
gi|433465819|ref|ZP_20423290.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM422]
gi|433467886|ref|ZP_20425335.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
87255]
gi|433480407|ref|ZP_20437689.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63041]
gi|433489004|ref|ZP_20446154.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M13255]
gi|433491192|ref|ZP_20448305.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM418]
gi|433505678|ref|ZP_20462611.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9506]
gi|433507826|ref|ZP_20464724.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9757]
gi|433512031|ref|ZP_20468846.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
4119]
gi|433514151|ref|ZP_20470935.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63049]
gi|433520574|ref|ZP_20477285.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
65014]
gi|433541756|ref|ZP_20498198.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63006]
gi|7227093|gb|AAF42173.1| putative GTP-binding protein [Neisseria meningitidis MC58]
gi|121051586|emb|CAM07884.1| hypothetical protein NMA0618 [Neisseria meningitidis Z2491]
gi|316984450|gb|EFV63423.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis H44/76]
gi|325139656|gb|EGC62195.1| GTP-binding protein EngD [Neisseria meningitidis CU385]
gi|325197660|gb|ADY93116.1| GTP-binding protein EngD [Neisseria meningitidis G2136]
gi|325200898|gb|ADY96353.1| GTP-binding protein EngD [Neisseria meningitidis H44/76]
gi|402336249|gb|EJU71510.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM2657]
gi|432200915|gb|ELK57003.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM422]
gi|432201438|gb|ELK57519.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
87255]
gi|432214178|gb|ELK70084.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63041]
gi|432221333|gb|ELK77144.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M13255]
gi|432225751|gb|ELK81491.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM418]
gi|432239380|gb|ELK94934.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9757]
gi|432239565|gb|ELK95117.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
9506]
gi|432245577|gb|ELL01045.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
4119]
gi|432246038|gb|ELL01500.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63049]
gi|432251911|gb|ELL07272.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
65014]
gi|432275708|gb|ELL30776.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
63006]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|433501499|ref|ZP_20458480.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM174]
gi|432233340|gb|ELK88968.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM174]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER IK L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMIKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|387813297|ref|YP_005428779.1| GTP-dependent nucleic acid-binding protein which may act as a
translation factor [Marinobacter hydrocarbonoclasticus
ATCC 49840]
gi|381338309|emb|CCG94356.1| GTP-dependent nucleic acid-binding protein which may act as a
translation factor [Marinobacter hydrocarbonoclasticus
ATCC 49840]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 270/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLTKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCFED +++HV KV
Sbjct: 60 PERVVPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFEDGNVIHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++VIN EL +DLD +EK ++++++ K+ D ++K A+ EK+ L +GK
Sbjct: 120 DPASDIEVINTELALADLDTVEKAIKRVQRVAKSGDKEAK---AQLEMFEKLLPVLNEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ L+ + I++LCLLT+KP +Y+ANV E + NPH+++V +A+ +
Sbjct: 177 PVRSMGLDKDQMTLIRELCLLTVKPTMYIANVNEDGFEN---NPHLDKVREIAASENAVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I ++EAE++EL EE+ +L +G+ E GL +IR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VPICNKLEAEISELEDEEKSMFLDEMGMEEPGLDRVIRAGYGLLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G R EGKDYIV++
Sbjct: 294 TVRIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAGKWRLEGKDYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVIHFRFNV 363
>gi|328958777|ref|YP_004376163.1| GTP-dependent nucleic acid-binding protein EngD [Carnobacterium sp.
17-4]
gi|328675101|gb|AEB31147.1| GTP-dependent nucleic acid-binding protein EngD [Carnobacterium sp.
17-4]
Length = 366
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/370 (55%), Positives = 277/370 (74%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MPLTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGVVEVPDYRLTRLTELVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IR+VD+I VVRCFED++I+HV GKV
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIRQVDAICHVVRCFEDDNIIHVEGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++ INLELV +DL+ +EKR ++ K + KD ++ AE A L+KI+ L +GK
Sbjct: 120 DPISDIETINLELVLADLESVEKRYTRVSKIARTKDKEAV---AELAVLDKIKPVLEEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARS+ N+ E ++ L LLT KP++YVANV+E +AD ++ VN+V A + +
Sbjct: 177 SARSIEFNEDEEKIVRSLFLLTTKPVLYVANVSEDQVADTENDELVNQVRKFAEEENAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ + A++E E+ EL EE+ +L LG+ ESGL LIRSTY+LLGL TYFT+G +E +AW
Sbjct: 237 IVVCARIEEEIAELEDEEKELFLEELGIEESGLDKLIRSTYNLLGLGTYFTAGVQEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFE+GFIRAET++Y+DF S AA+E G +RSEGK+Y+V++
Sbjct: 297 TFKKGMKAPQTAGIIHSDFERGFIRAETISYEDFDKYESEQAAKEAGRMRSEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GD++LFRFNV
Sbjct: 357 GDILLFRFNV 366
>gi|261401572|ref|ZP_05987697.1| GTP-binding protein YchF [Neisseria lactamica ATCC 23970]
gi|269208342|gb|EEZ74797.1| GTP-binding protein YchF [Neisseria lactamica ATCC 23970]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDLLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|358063114|ref|ZP_09149737.1| GTP-binding protein YchF [Clostridium hathewayi WAL-18680]
gi|356698675|gb|EHI60212.1| GTP-binding protein YchF [Clostridium hathewayi WAL-18680]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 272/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL +L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDERLKLLGDLYHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KVTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDANVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ I+LEL+FSD++ +++R+ K K A + +S K E L+ ++ L DGK AR
Sbjct: 120 LRDIETIDLELIFSDIEILDRRIAKTAKA-ANNDKSLAK--ELVVLKDMKAHLEDGKLAR 176
Query: 237 SVTLNDFERDS-IKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S +D + + I L LLT KP+I+ ANV+E DLAD G +NP+V EV A + S
Sbjct: 177 SFESDDEDAIAFINSLNLLTWKPVIFAANVSEDDLADDGENNPYVQEVRKFAEENASQVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +E+ +L LG+ ESGL LI ++Y LLGL +Y TSGE ET+AWT
Sbjct: 237 VICAQIEQEIAELEEDEKKMFLEELGLKESGLEKLIAASYELLGLISYLTSGEDETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFIRAE V Y D + + AA+EKGL+R EGKDY+V++G
Sbjct: 297 IKVGTKAPQAAGKIHTDFERGFIRAEVVNYQDLLDCKTYPAAKEKGLVRLEGKDYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|312866782|ref|ZP_07726995.1| GTP-binding protein YchF [Streptococcus parasanguinis F0405]
gi|311097565|gb|EFQ55796.1| GTP-binding protein YchF [Streptococcus parasanguinis F0405]
Length = 377
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 7 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 65
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 66 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 125
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 126 DAFVDPLADIDTINLELILADLESVNKRYARVEK-IARTQKDKDSVAEFNVLQKIKPVLE 184
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +ADP S +V ++ + A+
Sbjct: 185 DGKSARTIEFTEEEQKVVKGLFLLTTKPVLYVANVDEDVVADPDSIEYVKQIRDFAATEN 244
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL ++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 245 AEVVVISARAEEEISELDDADKQEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 304
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+Y+
Sbjct: 305 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYV 364
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 365 VQDGDIMEFRFNV 377
>gi|291543763|emb|CBL16872.1| GTP-binding protein YchF [Ruminococcus champanellensis 18P13]
Length = 364
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 193/368 (52%), Positives = 275/368 (74%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ N A++AN+PFCTIE NVGIV+VPD RL L+ + +
Sbjct: 1 MKLGMVGLPNVGKSTLFNALT-NAGAESANYPFCTIEKNVGIVSVPDERLDKLAEMYHPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGNKFL+ IREVD+I+ VVRCFE+ DI+HV+G+++P
Sbjct: 60 KFTPATLEFVDIAGLVKGASKGEGLGNKFLADIREVDAIVHVVRCFENIDIIHVDGEINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+++ KK D + AE LE+++ + +G AR
Sbjct: 120 ARDIETINLELIFSDIEMLERRIDRAKKASKGDKKYL---AEVDFLERLKAFMEEGHSAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLA-DPGSNPHVNEVMNLASDLQSGRVT 295
+ + E + +K LL+ KP+IY AN+ E+D + +NPH +V +A S +
Sbjct: 177 AFDFTEDELEMLKSTPLLSAKPVIYAANLCEADFVHNIDTNPHYKKVCEIAEAEHSAVLP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I AQ+EAE++++ E++ +L+ LG+ SGLG +I+ YSLLGL +Y T+G+ E +AWTI
Sbjct: 237 ICAQMEAEISDMSDEDKKLFLSELGLEVSGLGRIIQEGYSLLGLISYLTAGQPEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G APQAAG IH+DFEKGFIRAE V++DD +A G++AAA+EKGL+R EGKDY++Q+GD
Sbjct: 297 KKGTKAPQAAGKIHTDFEKGFIRAEVVSFDDLMACGTMAAAKEKGLVRLEGKDYVMQDGD 356
Query: 416 VMLFRFNV 423
++LFRFNV
Sbjct: 357 IVLFRFNV 364
>gi|423101198|ref|ZP_17088902.1| GTP-binding protein YchF [Listeria innocua ATCC 33091]
gi|370792313|gb|EHN60190.1| GTP-binding protein YchF [Listeria innocua ATCC 33091]
Length = 376
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 11 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 69
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 70 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 129
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 130 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 184
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 185 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEKDVSSPDDNKYVQQVREFAASENS 244
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 245 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 304
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 305 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 364
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 365 KDGDVVHFRFNV 376
>gi|114328982|ref|YP_746139.1| GTP-dependent nucleic acid-binding protein EngD [Granulibacter
bethesdensis CGDNIH1]
gi|114317156|gb|ABI63216.1| GTP-binding protein [Granulibacter bethesdensis CGDNIH1]
Length = 364
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 263/370 (71%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPR+ L+ +K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGRVAVPDPRMEKLATAAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK VP S+EFVDIAGLV+GAS+GEGLGN+FL +IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKIVPTSLEFVDIAGLVRGASRGEGLGNQFLGNIREVDAIIHVLRCFEDDDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D + + EL+ +DL+ +EKR+ L KK + D ++ A+ +E I AL G+
Sbjct: 121 DPVRDAETVETELMLADLESLEKRVPLLQKKARGNDKEAA---AQLELIEPIITALQAGQ 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ D +R + +L L+T KP++YVANV E+ A N V +LA+ +
Sbjct: 178 PARTAIPAD-QRVAASRLQLMTSKPVLYVANVEEASAAS--GNAISARVADLAARQGTRS 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA +EAE+++L E+R E+LA LG+ +SGL +IR+ Y LLGL TYFT G KET+AW
Sbjct: 235 VVISAAIEAEVSQLGDEDRAEFLAGLGLVDSGLDRVIRAGYDLLGLLTYFTCGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAAGVIH DFE+GFI AE + YDD++ G A A+E G R EGKDYIV++
Sbjct: 295 TIEQGTRAPQAAGVIHGDFERGFIAAEVIGYDDYITLGGEAGAKEAGKARVEGKDYIVKD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVILFRFNV 364
>gi|421547208|ref|ZP_15993246.1| GTP-binding protein EngD [Neisseria meningitidis NM183]
gi|421553413|ref|ZP_15999375.1| GTP-binding protein EngD [Neisseria meningitidis NM576]
gi|421563930|ref|ZP_16009742.1| GTP-binding protein EngD [Neisseria meningitidis NM2795]
gi|421906272|ref|ZP_16336173.1| putative GTP-binding protein YLF2 [Neisseria meningitidis alpha704]
gi|393292619|emb|CCI72092.1| putative GTP-binding protein YLF2 [Neisseria meningitidis alpha704]
gi|402321571|gb|EJU57044.1| GTP-binding protein EngD [Neisseria meningitidis NM183]
gi|402328090|gb|EJU63470.1| GTP-binding protein EngD [Neisseria meningitidis NM576]
gi|402339549|gb|EJU74763.1| GTP-binding protein EngD [Neisseria meningitidis NM2795]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + L + +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELVAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|449919587|ref|ZP_21798034.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 1SM1]
gi|449159335|gb|EMB62686.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 1SM1]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDRVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|19704700|ref|NP_604262.1| GTP-dependent nucleic acid-binding protein EngD [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|19715014|gb|AAL95561.1| GTP-binding protein [Fusobacterium nucleatum subsp. nucleatum ATCC
25586]
Length = 364
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/367 (55%), Positives = 269/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 PATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + S V +
Sbjct: 180 TLDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFTKSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVESELQEMDEESKQEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDNFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|22536191|ref|NP_687042.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae 2603V/R]
gi|25010081|ref|NP_734476.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
agalactiae NEM316]
gi|76797979|ref|ZP_00780238.1| GTP-binding protein YchF [Streptococcus agalactiae 18RS21]
gi|77414475|ref|ZP_00790625.1| GTP-binding protein YchF [Streptococcus agalactiae 515]
gi|22533008|gb|AAM98914.1|AE014191_6 GTP-binding protein YchF [Streptococcus agalactiae 2603V/R]
gi|23094432|emb|CAD45651.1| Unknown [Streptococcus agalactiae NEM316]
gi|76586659|gb|EAO63158.1| GTP-binding protein YchF [Streptococcus agalactiae 18RS21]
gi|77159485|gb|EAO70646.1| GTP-binding protein YchF [Streptococcus agalactiae 515]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP +VN++ A
Sbjct: 179 DGKSARTIEFTEEEAKVVKGLFLLTTKPVLYVANVDEDKVADPDDIDYVNQIRAFAETEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKLEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAA +IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAASIIHSDFERGFIRAVTMSYDDLIQYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|424715609|ref|YP_007016324.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes serotype 4b str. LL195]
gi|424014793|emb|CCO65333.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes serotype 4b str. LL195]
Length = 382
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 17 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 75
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 76 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 135
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 136 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 190
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 191 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASENS 250
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 251 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 310
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 311 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 370
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 371 KDGDVVHFRFNV 382
>gi|39937414|ref|NP_949690.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris CGA009]
gi|192293197|ref|YP_001993802.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris TIE-1]
gi|39651273|emb|CAE29795.1| putative GTP-binding protein [Rhodopseudomonas palustris CGA009]
gi|192286946|gb|ACF03327.1| GTP-binding protein YchF [Rhodopseudomonas palustris TIE-1]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 260/372 (69%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALM--- 230
P +D++ I EL+ SDL+ +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APLADIETIETELMLSDLESLEKRVDNLTKKAKGGDKDSKEQ------LELVTRALTLLR 174
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 175 DGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNKFSEQVMARAKEEG 232
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA++E+E+ L EER ++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 AVAVVISAKIESEIATLSKEERTDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKEA 292
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD++ G A AR+ G LR EGK+Y+
Sbjct: 293 RAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYIRLGGEAGARDGGKLRLEGKEYV 352
Query: 411 VQEGDVMLFRFN 422
V +GDVM FRFN
Sbjct: 353 VADGDVMHFRFN 364
>gi|152997609|ref|YP_001342444.1| GTP-dependent nucleic acid-binding protein EngD [Marinomonas sp.
MWYL1]
gi|150838533|gb|ABR72509.1| GTP-binding protein YchF [Marinomonas sp. MWYL1]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + ++EFVDIAGLV+GAS+GEGLGNKFL++IRE D+I VVRCFED +++HV+ V
Sbjct: 60 PERVLATTMEFVDIAGLVEGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+PK D++VINLEL+F+D++ I+K++ + K S +K A KA LE I++ L +G P
Sbjct: 120 NPKLDIEVINLELIFADIESIDKQL--FRTAKNAKSGNKEAIAHKAFLESIKEHLENGLP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ ++D ++ ++ L LLT KP +Y+ANVAE + NPH+++V +A + V
Sbjct: 178 VRSMEMSDEQKKEVRSLHLLTTKPTMYIANVAEDGFEN---NPHLDQVRAIAEAEGAMVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I Q+EAE++EL +EE E+L +G+ E GL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 235 PICNQLEAEISELDTEEMQEFLDEMGMEEPGLDRVIRAGYELLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G T PQAAGVIH+DFEKGFIRAE ++Y+DF+ + A+E G R EGKDYIV++G
Sbjct: 295 VKQGATGPQAAGVIHTDFEKGFIRAEVISYNDFIQYKGESGAKEAGKWRLEGKDYIVKDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|153815666|ref|ZP_01968334.1| hypothetical protein RUMTOR_01902 [Ruminococcus torques ATCC 27756]
gi|317501940|ref|ZP_07960124.1| GTP-binding protein YchF [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088245|ref|ZP_08337164.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336440081|ref|ZP_08619680.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_1_57FAA]
gi|145846907|gb|EDK23825.1| GTP-binding protein YchF [Ruminococcus torques ATCC 27756]
gi|316896620|gb|EFV18707.1| GTP-binding protein YchF [Lachnospiraceae bacterium 8_1_57FAA]
gi|330408489|gb|EGG87955.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 3_1_46FAA]
gi|336014430|gb|EGN44279.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_1_57FAA]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+ +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENTNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K D K E L +++ L D K A+
Sbjct: 120 IRDIETINLELIFSDLEILERRIAKTVKLSRND---KAAAKELDLLNRVKAHLEDNKMAK 176
Query: 237 S-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGRV 294
S VT ++ E++ + LLT KP+I+ ANV+E DLAD G+N V V A+
Sbjct: 177 SFVTDDEDEQEWLASYNLLTAKPVIFAANVSEDDLADDGANNEGVKAVREYAASEDCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E+++L +E+ +L LG+ ESGL LIR++Y LLGL +Y T+GE E +AWT
Sbjct: 237 VVCAEIEEEISQLDDDEKAMFLEELGLKESGLEKLIRASYHLLGLISYLTAGEPEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFIRAE V+YDD +A G+ AAA+EKGL+R EGK+Y+VQ+G
Sbjct: 297 IKRGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMACGTHAAAKEKGLVRLEGKEYVVQDG 356
Query: 415 DVMLFRFNV 423
D+MLFRFNV
Sbjct: 357 DIMLFRFNV 365
>gi|449893524|ref|ZP_21788787.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF12]
gi|449255806|gb|EMC53647.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SF12]
Length = 371
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ IN+EL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINIELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|344199406|ref|YP_004783732.1| GTP-binding protein YchF [Acidithiobacillus ferrivorans SS3]
gi|343774850|gb|AEM47406.1| GTP-binding protein YchF [Acidithiobacillus ferrivorans SS3]
Length = 363
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+VAVPDPRL LS + K
Sbjct: 1 MALACGIVGLPNVGKSTLFNAITRAGIA-AENYPFCTIEPNVGLVAVPDPRLEALSAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK A++EFVDIAGLV GA+QGEGLGN+FL+HIRE D+I V RCFED ++VHV+G V
Sbjct: 60 PQKVQHATMEFVDIAGLVAGAAQGEGLGNQFLAHIRETDAIALVTRCFEDPNVVHVSGHV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++V+ EL+ +DL +EK R+ + KG KD+ AE AA+ ++ L +
Sbjct: 120 DPVADLEVVLTELILADLSTVEKAQARVARQAKGGNKDAV-----AEVAAMTRLLPHLNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK A S+ LN E++ ++ LCLLTMKP++ +ANVAE++L D P + A++ +
Sbjct: 175 GKAAASLNLNSEEQEHLRSLCLLTMKPLMVIANVAENELQD---GPWRAPLEAWAAEQHA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+EL EL EE+ +L LG+ E GL +IR+ Y LLGL+TYFT+G KE +
Sbjct: 232 SVVPVCAAIESELAELEPEEQNAFLQDLGLEEPGLNRIIRAAYHLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIHSDFE+GFIRA+T+AYDDF+ A+E G +R+EGK+Y+V
Sbjct: 292 AWTIPVGATAPQAAGVIHSDFERGFIRAQTIAYDDFIQYQGEHGAKEAGKMRAEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ F FNV
Sbjct: 352 QDGDVLNFLFNV 363
>gi|210622326|ref|ZP_03293095.1| hypothetical protein CLOHIR_01043 [Clostridium hiranonis DSM 13275]
gi|210154314|gb|EEA85320.1| hypothetical protein CLOHIR_01043 [Clostridium hiranonis DSM 13275]
Length = 365
Score = 404 bits (1039), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 270/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTI+PN+G+V+VPDPRL L L S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITQAG-AESANYPFCTIDPNIGVVSVPDPRLDKLKELYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED ++VHV+G VDP
Sbjct: 60 KIVQTAIEFCDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDPNVVHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K K D K E L + L D K R
Sbjct: 120 LRDIETINLELIFSDIEVLERRLVKTTKALKAD---KTLQGEVDILNSLMATLEDNKCIR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ ++ +K L LLT KP+IYVANV E DLAD G +N V +V A S V
Sbjct: 177 TMEFDEDTAAFVKSLNLLTSKPVIYVANVCEDDLADDGATNAMVAKVREFAETEGSDTVV 236
Query: 296 ISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+EAE++EL + EE+ E+L +LG+ +SGL LIR++Y LLGL ++ T+GE E +AWT
Sbjct: 237 VCAQIEAEISELETDEEKKEFLETLGLEQSGLDKLIRASYHLLGLISFLTAGEMEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQA G IHSD E+GFI+AET+AY+D + G++ AA+EKG +R EGK+Y+V++G
Sbjct: 297 IKNGTKAPQAGGKIHSDIERGFIKAETIAYEDLIQYGNMTAAKEKGAVRLEGKEYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LF+FNV
Sbjct: 357 DVILFKFNV 365
>gi|296327680|ref|ZP_06870222.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|296155211|gb|EFG95986.1| GTP-binding protein YchF [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 364
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/367 (55%), Positives = 269/367 (73%), Gaps = 10/367 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL+ L+ + QK V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGVVTVPDERLNELAKIINPQKIV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
PA+VEF+DIAGLVKGAS+GEG GNKFLS+IR +I QVVRCF+D++I HV+G VDP D
Sbjct: 65 PATVEFIDIAGLVKGASKGEGRGNKFLSNIRSTSAICQVVRCFDDDNITHVDGSVDPLRD 124
Query: 180 VDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
+DVIN EL+F+D++ I+K + EKL + K K+S + + L K+++ L + K +
Sbjct: 125 IDVINTELIFADIETIDKAIEKHEKLARNKIKESVELM-----SVLPKVKKHLEEFKLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L D E+ +K LLT+KP+I+ ANVAE DLA N +V+ V + S V +
Sbjct: 180 TLDLTDDEKQILKNYQLLTLKPMIFAANVAEDDLAT--GNKYVDLVREFTRSIGSEVVVV 237
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA+VE+EL E+ E + E+L +LGV E+GL LIR+ + LLGL+TYFT+G KE +AWTIR
Sbjct: 238 SAKVESELQEMDEESKQEFLEALGVKEAGLNRLIRAGFKLLGLQTYFTAGPKEVRAWTIR 297
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAP+AAG IH+DFEKGFIRA+ V+YD+F+ ++E G+LR EGKDYIVQ+GD+
Sbjct: 298 IGDTAPKAAGEIHTDFEKGFIRAKVVSYDNFIKNSGWKMSQENGVLRLEGKDYIVQDGDL 357
Query: 417 MLFRFNV 423
M F FNV
Sbjct: 358 MEFLFNV 364
>gi|110681032|ref|YP_684039.1| GTP-dependent nucleic acid-binding protein EngD [Roseobacter
denitrificans OCh 114]
gi|109457148|gb|ABG33353.1| GTP-binding protein YchF [Roseobacter denitrificans OCh 114]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 268/373 (71%), Gaps = 14/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDARLDKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVDSI V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDSIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKD----SQSKLKDAEKAALEKIQQAL 229
DP +D + I EL+ +DL+ IEKR++ + +K + D Q +L +A KAALE
Sbjct: 121 DPVADAETIETELMLADLESIEKRLQNIVRKVRGGDKEAVQQQRLMEAAKAALE------ 174
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
DG+PAR V ++ +R + L LLT KP+++V NV E++ A N H +V +A+
Sbjct: 175 -DGRPARVVEVDAEDRKAWNMLQLLTSKPVLFVCNVGEAEAAT--GNAHSAKVAEMAAAQ 231
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISAQ+E E+++L EE +L +G+SE+GL LI++ Y+LL L TYFT G KE
Sbjct: 232 GNSHVVISAQIEEEISQLEPEEAEMFLDEMGLSEAGLDRLIQAGYALLHLETYFTVGPKE 291
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI G TAP+AAGVIH DFEKGFIRAET+AYDDFV+ G +AA+E G +R+EGK Y
Sbjct: 292 ARAWTIPQGTTAPKAAGVIHGDFEKGFIRAETIAYDDFVSLGGESAAKEAGKMRAEGKAY 351
Query: 410 IVQEGDVMLFRFN 422
+V++GDV+ F FN
Sbjct: 352 VVKDGDVLHFLFN 364
>gi|423071812|ref|ZP_17060585.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
intermedius F0413]
gi|355363586|gb|EHG11323.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
intermedius F0413]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 275/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDVRLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK V + EF DIAG+VKGAS+GEGLGN+FL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVATTFEFTDIAGIVKGASKGEGLGNQFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFQVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKRLFLLTTKPVLYVANVSEDEVADPDNIEYVQQIRKFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKIEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKCGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|421190281|ref|ZP_15647583.1| GTPase, translation factor [Oenococcus oeni AWRIB422]
gi|421192375|ref|ZP_15649642.1| GTPase, translation factor [Oenococcus oeni AWRIB548]
gi|399969669|gb|EJO03996.1| GTPase, translation factor [Oenococcus oeni AWRIB548]
gi|399970184|gb|EJO04489.1| GTPase, translation factor [Oenococcus oeni AWRIB422]
Length = 367
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 270/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGVVEVPDSRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I++VVR FED++I HV GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIEVVRAFEDSEITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++ IN EL+ +D++QI+KR K++K A +S+ K AE L+KI+ L GKP
Sbjct: 120 DPIADIETINTELIIADMEQIDKRYSKIEKA-AVNSKDKAAIAEYNVLKKIKPVLEAGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ ++ E+ + L LT KP++YVAN++E D+ADP S+ + + A+ + +
Sbjct: 179 VRSLQFDEEEKKIVHNLFFLTDKPMLYVANISEGDMADPASSQFYQAISDYAAKDGAEVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++A+ E E++E+ ++ ++L GVSE L LIR+ Y LLGLRT+FT+G KET+AWT
Sbjct: 239 GLAAKTEEEISEMDQADKADFLEMAGVSEPCLNKLIRAAYHLLGLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQ AG+IHSDFE+GFIRAET+++ D GS+AA + G LRSEGK+Y+VQ+G
Sbjct: 299 FKSGMKAPQVAGIIHSDFERGFIRAETISFPDLDKLGSVAAVKAAGKLRSEGKEYLVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIINFRFNV 367
>gi|56695719|ref|YP_166070.1| GTP-dependent nucleic acid-binding protein EngD [Ruegeria pomeroyi
DSS-3]
gi|56677456|gb|AAV94122.1| GTP-binding protein YchF [Ruegeria pomeroyi DSS-3]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/371 (53%), Positives = 260/371 (70%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG V VPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVGVPDARLDKLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + I EL+ +DL+ IEKR L KG KD+Q + + L Q AL D
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKDAQQQDR-----LLAVAQAALED 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR V ++D + + K L LLT KP++YV NV E++ A+ N H V +A+ +
Sbjct: 176 GKPARVVEVSDEDAKAWKMLQLLTTKPVLYVCNVGEAEAAE--GNAHSARVAEMAAAQGN 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISAQ+E E+++L +E +L +G+ E+GL LI++ Y+LL L TYFT G KE +
Sbjct: 234 SHVIISAQIEEEISQLEDDEAAMFLEEMGLEEAGLDRLIKAGYALLHLETYFTVGPKEAR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTIR G APQAAGVIH DFEKGFIRAET+AYDD++A A+E G +R+EGK Y+V
Sbjct: 294 AWTIRQGTAAPQAAGVIHGDFEKGFIRAETIAYDDYIACNGEQGAKEAGKMRAEGKSYVV 353
Query: 412 QEGDVMLFRFN 422
++GDV+ F FN
Sbjct: 354 KDGDVLHFLFN 364
>gi|421566169|ref|ZP_16011926.1| GTP-binding protein EngD [Neisseria meningitidis NM3081]
gi|402340886|gb|EJU76075.1| GTP-binding protein EngD [Neisseria meningitidis NM3081]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVG+V VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGVVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|421545159|ref|ZP_15991223.1| putative GTP-binding protein [Neisseria meningitidis NM140]
gi|421548179|ref|ZP_15994207.1| putative GTP-binding protein [Neisseria meningitidis NM2781]
gi|402321236|gb|EJU56711.1| putative GTP-binding protein [Neisseria meningitidis NM140]
gi|402326901|gb|EJU62299.1| putative GTP-binding protein [Neisseria meningitidis NM2781]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMVELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERSMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|357052491|ref|ZP_09113598.1| GTP-binding protein YchF [Clostridium clostridioforme 2_1_49FAA]
gi|355386678|gb|EHG33715.1| GTP-binding protein YchF [Clostridium clostridioforme 2_1_49FAA]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/369 (54%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDVRLDKLTAMYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +++HV+G ++P
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDPNVIHVDGCINP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K KG A +++ K+ E L+ I+ L DGK AR
Sbjct: 120 LRDIETINLELIFSDIEILERRIAKQSKG-AFNNKDLAKEVE--LLKAIKAHLEDGKLAR 176
Query: 237 SVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
S +D + R+ I L LLT KP+I+ ANVAE DLAD G+ N +V V A +
Sbjct: 177 SFEPDDDDAREFINTLNLLTWKPVIFAANVAEDDLADDGADNQYVRSVRGFADENNCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E+ EL +E+ +L LG++ESGL LI ++Y +LGL +Y T+G +E++AWT
Sbjct: 237 VICAEIEQEIAELDDDEKKMFLDDLGLTESGLEKLIAASYRILGLMSYLTAGPQESRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V YDD +A GS+ AA+EKGL+RSEGK+Y++++G
Sbjct: 297 IKVGTKAPQAAGKIHSDFERGFIRAEVVNYDDLMACGSMNAAKEKGLVRSEGKEYVMRDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|149003144|ref|ZP_01828053.1| translation-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|237651083|ref|ZP_04525335.1| translation-associated GTPase [Streptococcus pneumoniae CCRI 1974]
gi|237821196|ref|ZP_04597041.1| translation-associated GTPase [Streptococcus pneumoniae CCRI
1974M2]
gi|418144885|ref|ZP_12781680.1| GTPase family protein [Streptococcus pneumoniae GA13494]
gi|419458814|ref|ZP_13998753.1| GTPase family protein [Streptococcus pneumoniae GA02254]
gi|147758885|gb|EDK65881.1| translation-associated GTPase [Streptococcus pneumoniae SP14-BS69]
gi|353807351|gb|EHD87623.1| GTPase family protein [Streptococcus pneumoniae GA13494]
gi|379528810|gb|EHY94064.1| GTPase family protein [Streptococcus pneumoniae GA02254]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 HAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|340749834|ref|ZP_08686682.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium
mortiferum ATCC 9817]
gi|229419477|gb|EEO34524.1| GTP-dependent nucleic acid-binding protein engD [Fusobacterium
mortiferum ATCC 9817]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/368 (55%), Positives = 273/368 (74%), Gaps = 11/368 (2%)
Query: 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119
GIVGLPNVGKSTLFNA+ + G A+AAN+PFCTIEPNVG+V VPD RL LS + Q+ V
Sbjct: 5 GIVGLPNVGKSTLFNAITKAGAAEAANYPFCTIEPNVGMVTVPDSRLDELSKIINPQRVV 64
Query: 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSD 179
A+VEFVDIAGLVKGA++GEGLGNKFLS+IR +I QVVRCFED++++HV+G VDP D
Sbjct: 65 QATVEFVDIAGLVKGAAKGEGLGNKFLSNIRTTAAICQVVRCFEDDNVIHVSGSVDPIRD 124
Query: 180 VDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
++VIN EL+F+D++ ++K +EK KK K K+S + + LEK + L + + +
Sbjct: 125 IEVINTELIFADMETVDKAIEKHKKLAMNKNKESMALM-----PVLEKCKTHLENFQLLK 179
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++++ND E + ++ LLT+KP+I+ ANV+E DLA N +V +V A +L S V +
Sbjct: 180 TLSMNDEELELVRTYQLLTLKPMIFAANVSEDDLAT--GNEYVEKVREYAKELGSEVVIV 237
Query: 297 SAQVEAELTELPSEE-RVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
SA+VEAEL E+ EE + EYL +LGV E+GL LIR+ Y LLGL+TYFT+G KE +AWTI
Sbjct: 238 SAKVEAELQEMDDEESKKEYLEALGVEEAGLNRLIRAGYKLLGLQTYFTAGVKEVRAWTI 297
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G TAP+AAG IH+DFEKGFIRA+ V++DDF+ A+E G+LR EGK+YIVQ+GD
Sbjct: 298 KIGDTAPKAAGEIHTDFEKGFIRAKVVSFDDFIKYSGWKGAQEAGVLRLEGKEYIVQDGD 357
Query: 416 VMLFRFNV 423
+M F FNV
Sbjct: 358 LMEFLFNV 365
>gi|296111120|ref|YP_003621501.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
gi|339491662|ref|YP_004706167.1| GTP-binding protein [Leuconostoc sp. C2]
gi|295832651|gb|ADG40532.1| GTP-binding protein [Leuconostoc kimchii IMSNU 11154]
gi|338853334|gb|AEJ31544.1| GTP-binding protein [Leuconostoc sp. C2]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 268/369 (72%), Gaps = 3/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITQAG-AEMANYPFATIEPNVGMVEVPDDRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K +P + EF DIAG+VKGASQGEGLGNKFL +IR+V++I+ VVR F+ +DI+HVNG V
Sbjct: 60 ADKIIPTTFEFTDIAGIVKGASQGEGLGNKFLENIRQVNAIIHVVRAFDGDDIIHVNGIV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D+D IN EL+ +DL+ I+KR K+ + ++ AE + LEKI+ AL GK
Sbjct: 120 NPLDDIDTINTELILADLETIDKRYSKVARAAKGADKAAK--AEFSVLEKIKPALEAGKS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ D E+ +K L LLT KP++YVAN+AE D+ADP ++ + N++ A+ + +
Sbjct: 178 VRTLDFTDEEQKIVKGLFLLTTKPVLYVANLAEDDMADPEASKYFNDIKTFAATEGAEVI 237
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA E E+ +L E++ E+L GV+E GL LIR+ Y LL LRT+FT+G KET+AWT
Sbjct: 238 GLSASAEEEIAQLADEDKAEFLEMAGVTEPGLNKLIRAAYHLLNLRTFFTAGGKETRAWT 297
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQAAGVIHSDFE+GFIRAET+A+DD GS+ A +E G LRSEGK+YIV +G
Sbjct: 298 FKSGMKAPQAAGVIHSDFERGFIRAETIAFDDLDRLGSVKAVKEAGKLRSEGKEYIVNDG 357
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 358 DIIEFRFNV 366
>gi|120555280|ref|YP_959631.1| GTP-dependent nucleic acid-binding protein EngD [Marinobacter
aquaeolei VT8]
gi|120325129|gb|ABM19444.1| GTP-binding protein YchF [Marinobacter aquaeolei VT8]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 270/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+VA+PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKAGIG-AENFPFCTIEPNAGVVAMPDPRLTKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VP ++EFVDIAGLV GAS+GEGLGN+FL++IR+ D+I VVRCFED +++HV KV
Sbjct: 60 PERVVPTTMEFVDIAGLVAGASKGEGLGNQFLANIRQTDAIAHVVRCFEDGNVIHVANKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP SD++VIN EL +DLD +EK ++++++ K+ D ++K A+ EK+ L +GK
Sbjct: 120 DPASDIEVINTELALADLDTVEKAIKRVQRVAKSGDKEAK---AQLEMFEKLLPVLNEGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ L+ + I++LCLLT+KP +Y+ANV E + NPH+++V +A+ +
Sbjct: 177 PVRSMGLDKDQMALIRELCLLTVKPTMYIANVNEDGFEN---NPHLDKVREIAASENAVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I ++EAE++EL EE+ +L +G+ E GL +IR+ Y LLGL+TYFT+G KE +AW
Sbjct: 234 VPICNKLEAEISELEDEEKSMFLDEMGMEEPGLDRVIRAGYGLLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G TAPQAAGVIH+DFE+GFIRAE V+YDDFV A A++ G R EGKDYIV++
Sbjct: 294 TVRIGATAPQAAGVIHTDFERGFIRAEVVSYDDFVQYNGEAGAKDAGKWRLEGKDYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVIHFRFNV 363
>gi|421250513|ref|ZP_15706963.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
pneumoniae 2082239]
gi|395612090|gb|EJG72136.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
pneumoniae 2082239]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-IARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S ++ ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYIKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|417934423|ref|ZP_12577743.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. F0392]
gi|340770993|gb|EGR93508.1| GTP-binding protein YchF [Streptococcus mitis bv. 2 str. F0392]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + D S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDQDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKQEFLEALGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|392427895|ref|YP_006468906.1| GTP-binding protein [Streptococcus intermedius JTH08]
gi|419775854|ref|ZP_14301780.1| GTP-binding protein YchF [Streptococcus intermedius SK54]
gi|383846474|gb|EID83870.1| GTP-binding protein YchF [Streptococcus intermedius SK54]
gi|391757041|dbj|BAM22658.1| GTP-binding protein [Streptococcus intermedius JTH08]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 275/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDVRLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK V + EF DIAG+VKGAS+GEGLGN+FL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVATTFEFTDIAGIVKGASKGEGLGNQFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFQVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKRLFLLTTKPVLYVANVSEDEVADPDNIEYVQQIRKFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKIEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKHGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|288904228|ref|YP_003429449.1| GTP-binding protein [Streptococcus gallolyticus UCN34]
gi|306832488|ref|ZP_07465640.1| GTP-binding protein YchF [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325977205|ref|YP_004286921.1| putative GTP-binding protein YLF2 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|386336694|ref|YP_006032863.1| putative GTPase [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
gi|288730953|emb|CBI12497.1| putative GTP-binding protein [Streptococcus gallolyticus UCN34]
gi|304425388|gb|EFM28508.1| GTP-binding protein YchF [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325177133|emb|CBZ47177.1| putative GTP-binding protein YLF2 [Streptococcus gallolyticus
subsp. gallolyticus ATCC BAA-2069]
gi|334279330|dbj|BAK26904.1| putative GTPase [Streptococcus gallolyticus subsp. gallolyticus
ATCC 43143]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSIAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR+V + E+ +KQL LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTVDFTEEEQKIVKQLFLLTTKPVLYVANVDEDKVANPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKALFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAITMSYDDLIKYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|254470562|ref|ZP_05083966.1| GTP-binding protein YchF [Pseudovibrio sp. JE062]
gi|211960873|gb|EEA96069.1| GTP-binding protein YchF [Pseudovibrio sp. JE062]
Length = 366
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 273/372 (73%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR ++ +++
Sbjct: 1 MGFQCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDPRQSKIAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I V+RCFE++DI HV+GK+
Sbjct: 61 SKEIIPTRLTFVDIAGLVRGASKGEGLGNQFLANIREVDAIAHVLRCFENDDITHVDGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQA---LMD 231
DP +D + + EL+ SD++ +EKR+ L+K KAK S KDA KAAL ++QA L D
Sbjct: 121 DPIADAETVETELMVSDMESLEKRIAPLEK-KAK---SGDKDA-KAALPIMEQALAILQD 175
Query: 232 GKPARSVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
GKP R++ L D E +K L LLT KP++YV NV E + AD G N +V +A +
Sbjct: 176 GKPVRALGLTDPEEIKQLKMLNLLTSKPVLYVCNV-EEEAADKG-NSLSAKVQAMAEEQG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA +EAE+ +L EE+ EY+A +G+ E GL LIR+ Y LL L TYFT+G KET
Sbjct: 234 AASVVISAAIEAEIAQLEDEEQREYMADMGLEEPGLDRLIRAGYGLLELITYFTAGPKET 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI AG APQAAGVIH+DFE+GFIRA+T+AY+D+V G A+E G R EGK+YI
Sbjct: 294 RAWTIVAGTKAPQAAGVIHTDFERGFIRAQTIAYNDYVELGGETPAKEAGKARDEGKEYI 353
Query: 411 VQEGDVMLFRFN 422
VQ+GDV+LF+FN
Sbjct: 354 VQDGDVLLFKFN 365
>gi|449903572|ref|ZP_21792192.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M230]
gi|449974381|ref|ZP_21815262.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11VS1]
gi|449178416|gb|EMB80679.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11VS1]
gi|449260824|gb|EMC58316.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans M230]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAAMEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|266622037|ref|ZP_06114972.1| GTP-binding protein YchF [Clostridium hathewayi DSM 13479]
gi|288866276|gb|EFC98574.1| GTP-binding protein YchF [Clostridium hathewayi DSM 13479]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GI+GLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ L S
Sbjct: 1 MKLGIIGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDERLGKLAALYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDGNVIHVDGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D I+LEL+FSDL+ +E+R+ K K D +S K+ E L+ ++ L DGK AR
Sbjct: 120 LRDIDTIDLELIFSDLEILERRISKTAKSAFND-KSLAKELE--ILKAVKAHLEDGKLAR 176
Query: 237 SVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S+ +D + ++ + L LLT KP+I+ ANV+E DLAD G SN +V +V A+ S
Sbjct: 177 SMEFDDDDAQEFVASLNLLTYKPVIFAANVSEDDLADDGASNEYVKQVRGFAAGNGSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +ER +L LG++ESGL LI ++Y LLGL +Y T+G ET+AWT
Sbjct: 237 VICAQIEQEIAELEEDERKMFLEDLGLTESGLEKLIAASYHLLGLISYLTAGPTETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFI+AE V Y D + G+ AA+EKGL+R EGK+Y+V++G
Sbjct: 297 IKVGTKAPQAAGKIHSDFERGFIKAEVVNYQDLLDCGTYTAAKEKGLVRMEGKEYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|255263027|ref|ZP_05342369.1| GTP-binding protein YchF [Thalassiobium sp. R2A62]
gi|255105362|gb|EET48036.1| GTP-binding protein YchF [Thalassiobium sp. R2A62]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 262/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGEVAVPDARLDKLAAIAS 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGASQGEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQVIPTRMTFVDIAGLVKGASQGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D I EL+ +DL+ IEKRM+ L +K + D ++ ++ L+K Q AL DGK
Sbjct: 121 NPVEDASTIETELMLADLESIEKRMQGLVRKVRGGDKEAV---QQEELLKKAQAALEDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++D + + K L LLT KP++YV NV E + A N H V +A+ +
Sbjct: 178 PARVVEVDDEDLKAWKMLQLLTTKPVLYVCNVGEDESAT--GNAHSTAVAEMAAAEGNSH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISAQ+E E+++L ++E +L+ +G+ E GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAQIEEEISQLEADEAKMFLSEMGLDEPGLDRLIRAGYELLHLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G +AP+AAGVIH DFEKGFIRAET+AYD+FV G A+E G +R+EGK Y+VQ+
Sbjct: 296 TIREGTSAPKAAGVIHGDFEKGFIRAETIAYDEFVTLGGEQPAKEAGKMRAEGKGYVVQD 355
Query: 414 GDVMLFRFN 422
GDV+ F FN
Sbjct: 356 GDVLHFLFN 364
>gi|418077507|ref|ZP_12714736.1| GTPase family protein [Streptococcus pneumoniae GA47502]
gi|353745681|gb|EHD26350.1| GTPase family protein [Streptococcus pneumoniae GA47502]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEVIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|373454656|ref|ZP_09546521.1| GTP-binding protein YchF [Dialister succinatiphilus YIT 11850]
gi|371935662|gb|EHO63406.1| GTP-binding protein YchF [Dialister succinatiphilus YIT 11850]
Length = 368
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 268/372 (72%), Gaps = 5/372 (1%)
Query: 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGL 112
+S +L+ GIVGLPNVGKSTLFNA+ + G A+AANFPFCTIEPNVG+V VPD R++ L+ +
Sbjct: 1 MSTNLQIGIVGLPNVGKSTLFNAITKAG-AEAANFPFCTIEPNVGVVEVPDHRIYDLAAM 59
Query: 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG 172
K +K PA FVDIAGLV GAS+GEGLGN+FLSHIRE D+I VVRCFED +I HV G
Sbjct: 60 FKPKKTTPAFTRFVDIAGLVAGASKGEGLGNQFLSHIRETDAIAHVVRCFEDGNITHVEG 119
Query: 173 KVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMD 231
+DP D+D+IN EL +DL+ ++K+ K K +A Q+K A+ LEK+ AL +
Sbjct: 120 SIDPVRDMDIINTELCLADLESVDKKKTKTAKLAQAGIKQAK---ADLPVLEKVYDALQN 176
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G PAR++TL++ + + +K+L L+T+KP++YV N+AE D+ADP +N V A +
Sbjct: 177 GTPARALTLSEDDLEVLKELNLITLKPVLYVLNMAEDDIADPLANKFVQAASAEAEKEGA 236
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E E++EL EE +L LG E GL LIR+ YS+LGL +FT G E +
Sbjct: 237 KWVPISAEIEEEVSELDGEEAKAFLEDLGEEEPGLNRLIRTAYSMLGLINFFTVGPDECR 296
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
+WT+RAG AP+AAG IHSD E+GFIRAE V+YDD +A GS A REKGLLR EGKDYI+
Sbjct: 297 SWTVRAGTKAPKAAGKIHSDIERGFIRAEIVSYDDLMACGSYNAVREKGLLRVEGKDYII 356
Query: 412 QEGDVMLFRFNV 423
Q+GD+ FRFNV
Sbjct: 357 QDGDIAYFRFNV 368
>gi|121634245|ref|YP_974490.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria
meningitidis FAM18]
gi|304388374|ref|ZP_07370485.1| GTP-binding protein YchF [Neisseria meningitidis ATCC 13091]
gi|416164307|ref|ZP_11607187.1| GTP-binding protein EngD [Neisseria meningitidis N1568]
gi|416179622|ref|ZP_11611058.1| GTP-binding protein EngD [Neisseria meningitidis M6190]
gi|416193252|ref|ZP_11617091.1| GTP-binding protein EngD [Neisseria meningitidis ES14902]
gi|421551479|ref|ZP_15997470.1| GTP-binding protein EngD [Neisseria meningitidis 69166]
gi|421559830|ref|ZP_16005698.1| GTP-binding protein EngD [Neisseria meningitidis 92045]
gi|433472239|ref|ZP_20429617.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
68094]
gi|433474162|ref|ZP_20431517.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97021]
gi|433478392|ref|ZP_20435701.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70012]
gi|433481532|ref|ZP_20438799.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2006087]
gi|433484593|ref|ZP_20441812.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2002038]
gi|433485521|ref|ZP_20442724.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97014]
gi|433493195|ref|ZP_20450281.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM586]
gi|433495311|ref|ZP_20452372.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM762]
gi|433497444|ref|ZP_20454472.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7089]
gi|433497999|ref|ZP_20455015.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7124]
gi|433503575|ref|ZP_20460531.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM126]
gi|433510030|ref|ZP_20466887.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
12888]
gi|433526928|ref|ZP_20483550.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
69096]
gi|433537330|ref|ZP_20493826.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
77221]
gi|433539576|ref|ZP_20496043.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70030]
gi|120865951|emb|CAM09688.1| hypothetical protein NMC0379 [Neisseria meningitidis FAM18]
gi|304337640|gb|EFM03798.1| GTP-binding protein YchF [Neisseria meningitidis ATCC 13091]
gi|325127542|gb|EGC50466.1| GTP-binding protein EngD [Neisseria meningitidis N1568]
gi|325131484|gb|EGC54191.1| GTP-binding protein EngD [Neisseria meningitidis M6190]
gi|325137530|gb|EGC60112.1| GTP-binding protein EngD [Neisseria meningitidis ES14902]
gi|402327356|gb|EJU62746.1| GTP-binding protein EngD [Neisseria meningitidis 69166]
gi|402334596|gb|EJU69880.1| GTP-binding protein EngD [Neisseria meningitidis 92045]
gi|432206865|gb|ELK62866.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
68094]
gi|432207915|gb|ELK63901.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97021]
gi|432213286|gb|ELK69208.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70012]
gi|432218289|gb|ELK74152.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2006087]
gi|432219679|gb|ELK75515.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
2002038]
gi|432224010|gb|ELK79783.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
97014]
gi|432226798|gb|ELK82521.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM586]
gi|432227943|gb|ELK83645.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM762]
gi|432232218|gb|ELK87868.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7089]
gi|432236766|gb|ELK92370.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
M7124]
gi|432239045|gb|ELK94605.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
NM126]
gi|432244968|gb|ELL00447.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
12888]
gi|432258981|gb|ELL14261.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
69096]
gi|432271596|gb|ELL26719.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
70030]
gi|432271753|gb|ELL26875.1| 50S ribosome-binding GTPase family protein [Neisseria meningitidis
77221]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|224475512|ref|YP_002633118.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
carnosus subsp. carnosus TM300]
gi|222420119|emb|CAL26933.1| putative GTP-binding protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 268/372 (72%), Gaps = 10/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL LS +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLQALSDIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKVIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++VIN+ELV +DL+ ++K R+EK+ + K KD+ ++++ LE+I++AL
Sbjct: 120 DPLDDIEVINMELVLADLESVDKRLPRLEKMARQKDKDAVNEVR-----ILERIKEALEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G P RS+ N+ + +KQ LLT KP+IY+ANV E ++ + N V + A S
Sbjct: 175 GDPVRSLEFNEEDAKYVKQAQLLTSKPMIYIANVGEDEI-NEADNEKVTTIKEYADKEGS 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ ISA++E E+ L E++ +L LG++E GL LIRSTY LLGL TYFT+G +E +
Sbjct: 234 EVIVISAKIEEEIATLDEEDKEMFLEDLGITEPGLDRLIRSTYDLLGLATYFTAGVQEVR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT R GMTAPQ AG+IH+DFE+GFIRAE ++ D+V A+E G +R EGKDYI+
Sbjct: 294 AWTFRKGMTAPQCAGIIHTDFERGFIRAEVTSFKDYVENNGEHGAKEAGKMRLEGKDYIM 353
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 354 QDGDVVHFRFNV 365
>gi|418325769|ref|ZP_12936974.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU071]
gi|365227793|gb|EHM68981.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU071]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DGK
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM---ELRILTQIKEALEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 177 PVRSIDFNDDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G R EGKDYI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAGRQRLEGKDYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|242243296|ref|ZP_04797741.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|416127780|ref|ZP_11597097.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis FRI909]
gi|418329498|ref|ZP_12940559.1| GTP-binding protein YchF [Staphylococcus epidermidis 14.1.R1.SE]
gi|418615066|ref|ZP_13178018.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU118]
gi|418631213|ref|ZP_13193682.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU128]
gi|420176509|ref|ZP_14682929.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM061]
gi|420178351|ref|ZP_14684683.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM057]
gi|420180842|ref|ZP_14687051.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM053]
gi|420192499|ref|ZP_14698358.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM023]
gi|242233245|gb|EES35557.1| GTP-binding protein [Staphylococcus epidermidis W23144]
gi|319399806|gb|EFV88054.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis FRI909]
gi|365230294|gb|EHM71403.1| GTP-binding protein YchF [Staphylococcus epidermidis 14.1.R1.SE]
gi|374818496|gb|EHR82653.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU118]
gi|374835599|gb|EHR99198.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU128]
gi|394241053|gb|EJD86474.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM061]
gi|394246541|gb|EJD91797.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM057]
gi|394248321|gb|EJD93559.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM053]
gi|394261229|gb|EJE06029.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM023]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DGK
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM---ELRILTQIKEALEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 177 PVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G R EGKDYI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQHGGENGAKEAGRQRLEGKDYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|15839230|ref|NP_299918.1| GTP-dependent nucleic acid-binding protein EngD [Xylella fastidiosa
9a5c]
gi|9107872|gb|AAF85438.1|AE004071_6 GTP-binding protein [Xylella fastidiosa 9a5c]
Length = 363
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 270/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A AANFPFCTIEPNVG+V VPDPRL+ L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AANFPFCTIEPNVGVVPVPDPRLNQLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P +EFVDIAGLV GA+ GEGLGNKFL+HIREVD+I VVRCFE I+HV GKV
Sbjct: 60 PQKLLPTVIEFVDIAGLVAGAASGEGLGNKFLAHIREVDAIAHVVRCFEHGQIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D+++I+ EL+ +DLD +EK RM + KG K++ A K+ LE++Q AL +
Sbjct: 120 DPLADIEIIDTELILADLDTVEKACNRMMRAAKGGDKEAI-----ACKSVLERLQVALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GK ARS L++ ER ++ L LLT+KP++Y+ANV E+ D N ++ + A+ +
Sbjct: 175 GKSARSAGLDEDERALVRDLFLLTLKPVMYIANVLENGFQD---NVYLEALRVRAASDNA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA +E EL +L +R +L LG+ E GL ++R+ Y+LLGL+TYFT+G KE +
Sbjct: 232 QLVPISAVIEEELAQLEDVDRDAFLVDLGLEEPGLNRVVRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+++G TAPQAA VIH+DFEKGFIRAET+A+DDF+ A AR+ G +R EGK+Y V
Sbjct: 292 AWTVKSGATAPQAAAVIHTDFEKGFIRAETIAFDDFIKYKGEAGARDAGRMRLEGKEYRV 351
Query: 412 QEGDVMLFRFNV 423
QEGDV+ FR NV
Sbjct: 352 QEGDVLHFRINV 363
>gi|421276459|ref|ZP_15727281.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mitis SPAR10]
gi|395876935|gb|EJG88006.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mitis SPAR10]
Length = 371
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E + D S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVGDSDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|377810325|ref|YP_005005546.1| GTPase [Pediococcus claussenii ATCC BAA-344]
gi|361057066|gb|AEV95870.1| GTPase of unknown function family protein [Pediococcus claussenii
ATCC BAA-344]
Length = 368
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/374 (52%), Positives = 275/374 (73%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLDRIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 ADKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ IN+EL +DLD I+KR+ K++ KG+ KD+ ++L A LEKI+ L +
Sbjct: 120 DPIEDIQTINMELSLADLDAIDKRISKVQRAAKGRDKDAVAEL-----AVLEKIKPVLEE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--DL 289
GK R++ ++ E+ +K L LLT KP++YVAN+AE D+A+P S+ + N + + + D
Sbjct: 175 GKAVRTIEFDEMEQSIVKGLFLLTSKPVLYVANIAEDDMAEPESSKYFNTIKDYVAQEDP 234
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
++ + ISA+ E E+ EL E++ ++L + G+ E GL LIR++Y LLGL+T+FT+G KE
Sbjct: 235 EAEVLGISAETEQEIAELEDEDKADFLEAEGIEEPGLNRLIRASYHLLGLQTFFTAGGKE 294
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT + GMTAPQ AGVIHSDFE+GFIRAETV++DD GS+ +E G LR EGKDY
Sbjct: 295 TRAWTFKKGMTAPQTAGVIHSDFERGFIRAETVSFDDLDKYGSMQGVKEAGRLRLEGKDY 354
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GD++ FRFNV
Sbjct: 355 LVQDGDIIEFRFNV 368
>gi|260437309|ref|ZP_05791125.1| GTP-binding protein YchF [Butyrivibrio crossotus DSM 2876]
gi|292810221|gb|EFF69426.1| GTP-binding protein YchF [Butyrivibrio crossotus DSM 2876]
Length = 365
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 274/369 (74%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V+VPD RL +LS L S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVSVPDERLQLLSDLYNSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA +EFVDIAGLVKGAS+GEGLGN+FLSHIRE D+I+ VVRCFE+++IVHV+G +DP
Sbjct: 60 KIVPAVIEFVDIAGLVKGASKGEGLGNQFLSHIRETDAIVHVVRCFENSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D+D INLEL+FSD+D I++R+ K+ +G D E LE+++ L DGK AR
Sbjct: 120 LRDIDTINLELIFSDIDIIDRRIAKVSRGARNDKALA---KELELLEELKAHLEDGKAAR 176
Query: 237 S-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S VT +D ++ + LLT KP+IY ANV+E DLAD G SN +V +V A+ S
Sbjct: 177 SFVTDDDDKKALLSTYDLLTFKPVIYAANVSEDDLADDGASNENVAKVREFAASEGSEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E++EL +E+ +L LG+ ESGL LI+++Y LLGL ++ T+G ET+AWT
Sbjct: 237 VVCAQIEEEISELEDDEKKMFLEDLGLKESGLDKLIKASYKLLGLISFLTAGPTETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSDFE+GFI+AE V Y D + GS AAA+EKGL+ EGKDY+V++G
Sbjct: 297 IKKGTKAPGAAGKIHSDFERGFIKAEVVYYKDLLECGSYAAAKEKGLVGIEGKDYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|145588330|ref|YP_001154927.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
gi|145046736|gb|ABP33363.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
asymbioticus QLW-P1DMWA-1]
Length = 364
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 264/369 (71%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 PERVLPAAVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDPNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D+ VI+ EL SDL +EK + + K AK K A A L K+Q L P
Sbjct: 120 DPIADIGVIDTELALSDLATVEKTLNRSSKA-AKSGNDKEAAALVAVLTKVQAHLDSALP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ L D E+ IK LCL+T KP +YVANV E + NPH+ V A+ + V
Sbjct: 179 VRSMNLTDDEKLLIKPLCLITAKPAMYVANVKEDGFEN---NPHLEAVKQHAAKENAPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L ++ E+LA LG++E GL +IR+ Y+LLGL TYFT+G KE +AWT
Sbjct: 236 AVCAAIEAEIADLDDVDKTEFLADLGMAEPGLDRVIRAGYALLGLHTYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIH+DFE+GFIRA+T+AYDDF+ + A+E G +R+EGK+Y+V++G
Sbjct: 296 IHQGDTAPQAAGVIHTDFERGFIRAQTIAYDDFIQFKGESGAKEAGKMRAEGKEYVVKDG 355
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 356 DVLNFLFNV 364
>gi|444383846|ref|ZP_21182024.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS8106]
gi|444385813|ref|ZP_21183882.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS8203]
gi|444248205|gb|ELU54719.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS8106]
gi|444249130|gb|ELU55625.1| GTP-binding protein YchF [Streptococcus pneumoniae PCS8203]
Length = 374
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/374 (53%), Positives = 273/374 (72%), Gaps = 6/374 (1%)
Query: 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLS 113
+M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 3 NMALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMI 61
Query: 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 62 TPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGR 121
Query: 174 ----VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQAL 229
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 122 EDAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVL 180
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 181 EDGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATE 240
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 241 NAEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKE 300
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+Y
Sbjct: 301 VRAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEY 360
Query: 410 IVQEGDVMLFRFNV 423
IVQ+GD++ FRFNV
Sbjct: 361 IVQDGDIIEFRFNV 374
>gi|387785185|ref|YP_006250281.1| putative GTP-binding protein [Streptococcus mutans LJ23]
gi|449887707|ref|ZP_21786986.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SA41]
gi|449899281|ref|ZP_21790965.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans R221]
gi|449917236|ref|ZP_21797191.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 15JP3]
gi|449937253|ref|ZP_21804467.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 2ST1]
gi|449942138|ref|ZP_21805876.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11A1]
gi|450011597|ref|ZP_21829238.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans A19]
gi|450024006|ref|ZP_21830978.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U138]
gi|450042884|ref|ZP_21837665.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans T4]
gi|450076097|ref|ZP_21849678.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N3209]
gi|450116528|ref|ZP_21864545.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans ST1]
gi|450154673|ref|ZP_21877884.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 21]
gi|379131586|dbj|BAL68338.1| putative GTP-binding protein [Streptococcus mutans LJ23]
gi|449151015|gb|EMB54761.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 11A1]
gi|449154442|gb|EMB58029.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 15JP3]
gi|449164514|gb|EMB67567.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 2ST1]
gi|449189298|gb|EMB90966.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans A19]
gi|449192527|gb|EMB93944.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U138]
gi|449197092|gb|EMB98304.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans T4]
gi|449213177|gb|EMC13519.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans N3209]
gi|449226899|gb|EMC26368.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans ST1]
gi|449237646|gb|EMC36466.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 21]
gi|449252266|gb|EMC50250.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans SA41]
gi|449258604|gb|EMC56173.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans R221]
Length = 371
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|385329089|ref|YP_005883392.1| translation-associated GTPase [Neisseria meningitidis alpha710]
gi|418288983|ref|ZP_12901388.1| GTP-binding protein EngD [Neisseria meningitidis NM233]
gi|418291238|ref|ZP_12903272.1| GTP-binding protein EngD [Neisseria meningitidis NM220]
gi|308389941|gb|ADO32261.1| translation-associated GTPase [Neisseria meningitidis alpha710]
gi|372200202|gb|EHP14319.1| GTP-binding protein EngD [Neisseria meningitidis NM220]
gi|372200633|gb|EHP14680.1| GTP-binding protein EngD [Neisseria meningitidis NM233]
Length = 363
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|386361885|ref|YP_006071216.1| GTP-binding protein [Streptococcus pyogenes Alab49]
gi|421893130|ref|ZP_16323692.1| GTP-binding and nucleic acid-binding protein YchF [Streptococcus
pyogenes NS88.2]
gi|350276294|gb|AEQ23662.1| GTP-binding protein [Streptococcus pyogenes Alab49]
gi|379981115|emb|CCG27414.1| GTP-binding and nucleic acid-binding protein YchF [Streptococcus
pyogenes NS88.2]
Length = 371
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPVADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E +K L LLT KP++YVANV E +A+P +V ++ + A+
Sbjct: 179 DGKSARTIEFTDEEAKVVKGLFLLTTKPVLYVANVDEDKVANPDGIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|254673163|emb|CBA08008.1| conserved hypothetical protein [Neisseria meningitidis alpha275]
Length = 363
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVG+V VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGVVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PIVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|344340956|ref|ZP_08771879.1| GTP-binding protein YchF [Thiocapsa marina 5811]
gi|343799201|gb|EGV17152.1| GTP-binding protein YchF [Thiocapsa marina 5811]
Length = 363
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 270/369 (73%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL VL+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDVLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P +++FVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFE++D+VHV G+V
Sbjct: 60 PQRVIPTTMQFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFENDDVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++VIN EL +DL+ + K +++ ++ K K+ A KA LE+I+ L GKP
Sbjct: 120 DPLDDIEVINTELALADLESVTKALDRAER-MVKTGDKKIL-ARKAVLEQIRDQLDAGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L+ ++ L LLT KP +Y+ANVAE D NP +++V+ LA + + V
Sbjct: 178 VRAMGLDAEALREVRDLFLLTAKPTLYIANVAEDGFVD---NPILDKVVALAGEEGAEVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L +ER E+LA LG++E GL ++R+ Y LLGL TYFT+GEKE +AWT
Sbjct: 235 PVCAAIEAEIFDLEDQERDEFLAELGLTEPGLNRVVRAGYRLLGLETYFTAGEKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I AG+ APQAA VIH+DFE+GFIRAE +AYDDFVA A+E G LRSEGK+YIV++G
Sbjct: 295 IPAGVRAPQAAAVIHTDFERGFIRAEVIAYDDFVACKGEQGAKEAGKLRSEGKEYIVKDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVVHFRFNV 363
>gi|417847575|ref|ZP_12493537.1| GTP-binding protein YchF [Streptococcus mitis SK1073]
gi|339456409|gb|EGP69000.1| GTP-binding protein YchF [Streptococcus mitis SK1073]
Length = 371
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K E L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVEEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L +LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVIISARAEEEISELDDEDKQEFLEALGLAESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|319781880|ref|YP_004141356.1| GTP-binding protein YchF [Mesorhizobium ciceri biovar biserrulae
WSM1271]
gi|317167768|gb|ADV11306.1| GTP-binding protein YchF [Mesorhizobium ciceri biovar biserrulae
WSM1271]
Length = 367
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/374 (53%), Positives = 267/374 (71%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ +DLD +E+R+ + +K K K++ S L E AALE +Q
Sbjct: 121 DPVADAETVETELMLADLDSLERRIVQFRKRAGSKDKEATSVLPMME-AALELLQA---- 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R + L D + ++ L LLT P++YV NVAE+D A N H V +A+
Sbjct: 176 GKPTR-ILLKDISAEDLRILQGLNLLTSHPVLYVCNVAEADAAT--GNEHTRAVEKMATA 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+G V ISA +EAE+ +L EE +E+L+SLG+ E GL +IR+ Y LL L TYFT G K
Sbjct: 233 QGAGTVVISAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKIIRAGYDLLHLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI G APQAAGVIH+DFE+GFIRA+T+AY+DFV G AA+E G R EGK+
Sbjct: 293 ETRAWTIHKGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVTLGGEVAAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFN 422
Y+VQ+GD++LF+FN
Sbjct: 353 YVVQDGDILLFKFN 366
>gi|209966681|ref|YP_002299596.1| GTP-binding protein YchF [Rhodospirillum centenum SW]
gi|209960147|gb|ACJ00784.1| GTP-binding protein YchF [Rhodospirillum centenum SW]
Length = 365
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/370 (53%), Positives = 259/370 (70%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ A+AAN+PFCTIEPNVG V VPDPRL L+ ++K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTSTAAAEAANYPFCTIEPNVGRVGVPDPRLDRLAVIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP +EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G V
Sbjct: 61 SAKTVPTQLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D + + EL+ +DLD +EKR+ L KK K D ++K A +E+ L DGK
Sbjct: 121 DPVRDAETVETELMLADLDSLEKRLPPLQKKAKGGDKEAK---ATADLMERALTVLRDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V L+ E +Q+ LLT KP++YV NV E+ A N V +A +
Sbjct: 178 PARTVELSPEEVSGFRQMQLLTGKPVLYVCNVEEASAA--AGNAFSARVEAMAKAQGAAS 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA +EAE+++LP E++ EYLAS+G+ E GL LIR+ Y LL L T+FT G KE +AW
Sbjct: 236 VVISAAIEAEVSQLPPEDKAEYLASMGLEEPGLNRLIRAGYGLLNLLTFFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T+R G AP+AAGVIH+DFE+GFI+AET+ ++ +V G A+E G +R EGK+Y+VQ+
Sbjct: 296 TVRRGAKAPEAAGVIHTDFERGFIKAETIDFETYVTLGGEGPAKEAGKMRMEGKEYVVQD 355
Query: 414 GDVMLFRFNV 423
GD+ FRFNV
Sbjct: 356 GDIFHFRFNV 365
>gi|16801978|ref|NP_472246.1| GTP-dependent nucleic acid-binding protein EngD [Listeria innocua
Clip11262]
gi|16804816|ref|NP_466301.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes EGD-e]
gi|46908969|ref|YP_015358.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes serotype 4b str. F2365]
gi|47092669|ref|ZP_00230456.1| GTP-binding protein YchF [Listeria monocytogenes str. 4b H7858]
gi|47095586|ref|ZP_00233194.1| GTP-binding protein YchF [Listeria monocytogenes str. 1/2a F6854]
gi|217966014|ref|YP_002351692.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes HCC23]
gi|226225332|ref|YP_002759439.1| GTP-binding protein [Listeria monocytogenes serotype 4b str. CLIP
80459]
gi|254824852|ref|ZP_05229853.1| translation-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|254827347|ref|ZP_05232034.1| translation-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|254851914|ref|ZP_05241262.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-503]
gi|254913034|ref|ZP_05263046.1| GTP-binding protein YchF [Listeria monocytogenes J2818]
gi|254930944|ref|ZP_05264303.1| translation-associated GTPase [Listeria monocytogenes HPB2262]
gi|254937415|ref|ZP_05269112.1| translation-associated GTPase [Listeria monocytogenes F6900]
gi|254992807|ref|ZP_05274997.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J2-064]
gi|255016987|ref|ZP_05289113.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL F2-515]
gi|255025148|ref|ZP_05297134.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J2-003]
gi|255029443|ref|ZP_05301394.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes LO28]
gi|255521559|ref|ZP_05388796.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
monocytogenes FSL J1-175]
gi|290891961|ref|ZP_06554958.1| translation-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|300763460|ref|ZP_07073458.1| GTP-binding protein YchF [Listeria monocytogenes FSL N1-017]
gi|386009560|ref|YP_005927838.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L99]
gi|386028186|ref|YP_005948962.1| putative GTP-binding protein [Listeria monocytogenes M7]
gi|386045085|ref|YP_005963890.1| GTP-binding protein YchF [Listeria monocytogenes 10403S]
gi|386048512|ref|YP_005966844.1| GTP-binding protein YchF [Listeria monocytogenes J0161]
gi|386051762|ref|YP_005969753.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-561]
gi|386054966|ref|YP_005972524.1| GTP-binding protein YchF [Listeria monocytogenes Finland 1998]
gi|386733482|ref|YP_006206978.1| GTP-binding protein YchF [Listeria monocytogenes 07PF0776]
gi|404282355|ref|YP_006683253.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2755]
gi|404285288|ref|YP_006686185.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2372]
gi|404288168|ref|YP_006694754.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|404409162|ref|YP_006691877.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2376]
gi|404412029|ref|YP_006697617.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC5850]
gi|404414856|ref|YP_006700443.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC7179]
gi|405751128|ref|YP_006674594.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
ATCC 19117]
gi|405754001|ref|YP_006677466.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2378]
gi|405759844|ref|YP_006689120.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2479]
gi|406705522|ref|YP_006755876.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L312]
gi|417313986|ref|ZP_12100692.1| GTP-binding protein YchF [Listeria monocytogenes J1816]
gi|417318811|ref|ZP_12105374.1| GTP-binding protein YchF [Listeria monocytogenes J1-220]
gi|422417264|ref|ZP_16494221.1| GTP-binding protein YchF [Listeria innocua FSL J1-023]
gi|424824532|ref|ZP_18249545.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes str. Scott A]
gi|16412279|emb|CAD00992.1| lmo2779 [Listeria monocytogenes EGD-e]
gi|16415460|emb|CAC98144.1| lin2919 [Listeria innocua Clip11262]
gi|46882242|gb|AAT05535.1| GTP-binding protein YchF [Listeria monocytogenes serotype 4b str.
F2365]
gi|47016016|gb|EAL06941.1| GTP-binding protein YchF [Listeria monocytogenes str. 1/2a F6854]
gi|47018964|gb|EAL09710.1| GTP-binding protein YchF [Listeria monocytogenes str. 4b H7858]
gi|217335284|gb|ACK41078.1| GTP-binding protein YchF [Listeria monocytogenes HCC23]
gi|225877794|emb|CAS06509.1| Putative GTP-binding protein [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|258599725|gb|EEW13050.1| translation-associated GTPase [Listeria monocytogenes FSL N3-165]
gi|258605210|gb|EEW17818.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-503]
gi|258610017|gb|EEW22625.1| translation-associated GTPase [Listeria monocytogenes F6900]
gi|290558555|gb|EFD92072.1| translation-associated GTPase [Listeria monocytogenes FSL J2-071]
gi|293582491|gb|EFF94523.1| translation-associated GTPase [Listeria monocytogenes HPB2262]
gi|293591034|gb|EFF99368.1| GTP-binding protein YchF [Listeria monocytogenes J2818]
gi|293594094|gb|EFG01855.1| translation-associated GTPase [Listeria monocytogenes FSL J1-194]
gi|300515737|gb|EFK42786.1| GTP-binding protein YchF [Listeria monocytogenes FSL N1-017]
gi|307572370|emb|CAR85549.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L99]
gi|313621924|gb|EFR92583.1| GTP-binding protein YchF [Listeria innocua FSL J1-023]
gi|328468257|gb|EGF39263.1| GTP-binding protein YchF [Listeria monocytogenes J1816]
gi|328469124|gb|EGF40072.1| GTP-binding protein YchF [Listeria monocytogenes J1-220]
gi|332313212|gb|EGJ26307.1| GTP-dependent nucleic acid-binding protein engD [Listeria
monocytogenes str. Scott A]
gi|336024767|gb|AEH93904.1| putative GTP-binding protein [Listeria monocytogenes M7]
gi|345535503|gb|AEO04944.1| GTP-binding protein YchF [Listeria monocytogenes J0161]
gi|345538319|gb|AEO07759.1| GTP-binding protein YchF [Listeria monocytogenes 10403S]
gi|346425608|gb|AEO27133.1| GTP-binding protein YchF [Listeria monocytogenes FSL R2-561]
gi|346647617|gb|AEO40242.1| GTP-binding protein YchF [Listeria monocytogenes Finland 1998]
gi|384392240|gb|AFH81310.1| GTP-binding protein YchF [Listeria monocytogenes 07PF0776]
gi|404220328|emb|CBY71692.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
ATCC 19117]
gi|404223201|emb|CBY74564.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2378]
gi|404228990|emb|CBY50395.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2755]
gi|404231855|emb|CBY53259.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC5850]
gi|404234790|emb|CBY56193.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2372]
gi|404237726|emb|CBY59128.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2479]
gi|404240555|emb|CBY61956.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC7179]
gi|404243311|emb|CBY64711.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2376]
gi|404247097|emb|CBY05322.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
serotype 7 str. SLCC2482]
gi|406362552|emb|CBY68825.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
L312]
Length = 366
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|372324292|ref|ZP_09518881.1| GTP-binding and nucleic acid-binding protein [Oenococcus kitaharae
DSM 17330]
gi|366983100|gb|EHN58499.1| GTP-binding and nucleic acid-binding protein [Oenococcus kitaharae
DSM 17330]
Length = 367
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 265/369 (71%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G AQ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AQMANYPFATIEPNVGVVEVPDVRLVRIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I+QVVR FED++I HV+GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIQVVRAFEDSEITHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ +N EL+ +DLD + R K++K A +S+ K AE L+KI+ L G+P
Sbjct: 120 DPLEDIETLNTELIIADLDHVNNRYSKVEKA-AVNSKDKEAIAEYQLLKKIKPVLEAGEP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ + E + L LT KP++YVAN+AE D+ADP +P V + A+ + +
Sbjct: 179 VRSLEFDTDEAKIVHGLFFLTDKPMLYVANIAEDDMADPSQSPLYQVVADYAAKDHAEVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++A+ E E++E+ ++ ++L GV E+GL LIR+ Y LLGLRT+FT+G KET+AWT
Sbjct: 239 GLAAKTEEEISEMAESDKADFLEMAGVQEAGLNRLIRTAYHLLGLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+AGM APQ AG+IHSDFE+GFIRAETV+Y D GS+AA + G LRSEGK+Y+V +G
Sbjct: 299 FKAGMKAPQVAGIIHSDFERGFIRAETVSYTDLDQLGSMAAVKAAGKLRSEGKEYLVADG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIINFRFNV 367
>gi|316935873|ref|YP_004110855.1| GTP-binding protein YchF [Rhodopseudomonas palustris DX-1]
gi|315603587|gb|ADU46122.1| GTP-binding protein YchF [Rhodopseudomonas palustris DX-1]
Length = 365
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 260/372 (69%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAEVGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQ+ +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED DI HV G+V
Sbjct: 61 SQQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDGDITHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALM--- 230
P +D++ I EL+ +DL+ +EKR++ L KK K D SK + LE + +AL
Sbjct: 121 APLADIETIETELMLADLESLEKRVDNLTKKAKGGDKDSKEQ------LELVTRALTLLR 174
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGKPAR + E + + L LLT KP++YV NV E A+ N +VM A +
Sbjct: 175 DGKPARFLERKPEEERAFRMLGLLTSKPVLYVCNVEEGSAAE--GNKFSEQVMARAKEEG 232
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA++E+E+ L EER ++L +LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 233 AVAVVISAKIESEIATLSKEERTDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKEA 292
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G APQAA VIH+DFEKGFIRAET+AYDD++ G A AR+ G LR EGK+YI
Sbjct: 293 RAWTITKGTKAPQAAAVIHTDFEKGFIRAETIAYDDYIRLGGEAGARDGGKLRLEGKEYI 352
Query: 411 VQEGDVMLFRFN 422
V +GDVM FRFN
Sbjct: 353 VADGDVMHFRFN 364
>gi|42524125|ref|NP_969505.1| GTP-dependent nucleic acid-binding protein EngD [Bdellovibrio
bacteriovorus HD100]
gi|39576333|emb|CAE80498.1| GTP-binding protein [Bdellovibrio bacteriovorus HD100]
Length = 366
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 270/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ + KA+AAN+PFCTI+PNVG+V VPDPR+ ++ K
Sbjct: 1 MALQVGIVGLPNVGKSTLFNALT-SAKAEAANYPFCTIDPNVGVVTVPDPRMDKITEFIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VP ++EFVDIAG+VKGASQGEGLGN+FLSHIR+ D+I+ VVRCF+D +I+HV G V
Sbjct: 60 PQKVVPTTMEFVDIAGIVKGASQGEGLGNQFLSHIRQTDAIVHVVRCFDDPNIIHVAGSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK-DAEKAALEKIQQALMDGK 233
+P D+++IN EL+ +DLD +EKR+++ +K + KLK D E A +KI++AL G
Sbjct: 120 EPIRDIEIINTELLLADLDSVEKRLQRTEKQAKNSTDKKLKLDVEVA--KKIKEALGKGL 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+V L++ E+ ++K++ LLT KP++Y NV ++D A G N V A++ +
Sbjct: 178 PARAVVLDEMEQVALKEMHLLTAKPVLYAMNVNDADFA-AGGNDWTKAVEARAAEENNKT 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ I + +EAE+ LP EER ++L +LG E GL LIR Y+LLGL+TYFT+G E +AW
Sbjct: 237 ILICSAMEAEIALLPPEERKDFLDALGAEEPGLNRLIREAYTLLGLQTYFTAGVTEVRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIRA APQAAGVIHSDFE+GFI+AET +D S A ++ G R EGK+Y+V++
Sbjct: 297 TIRANTKAPQAAGVIHSDFERGFIKAETYHCEDLFKYKSEQAIKDAGKYRIEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+ F+FNV
Sbjct: 357 GDVLFFKFNV 366
>gi|374332780|ref|YP_005082964.1| translation-associated GTPase [Pseudovibrio sp. FO-BEG1]
gi|359345568|gb|AEV38942.1| translation-associated GTPase [Pseudovibrio sp. FO-BEG1]
Length = 366
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 273/372 (73%), Gaps = 11/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR ++ +++
Sbjct: 1 MGFQCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGDVAVPDPRQSKIAAIAQ 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I V+RCFE++DI HV+GK+
Sbjct: 61 SKEIIPTRLTFVDIAGLVRGASKGEGLGNQFLANIREVDAIAHVLRCFENDDITHVDGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQA---LMD 231
DP +D + + EL+ SD++ +EKR+ L+K KAK S KDA KAAL ++QA L D
Sbjct: 121 DPIADAETVETELMVSDMESLEKRIAPLEK-KAK---SGDKDA-KAALPIMEQALAILQD 175
Query: 232 GKPARSVTLNDFER-DSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
GKP R++ L D E +K L LLT KP++YV NV E + AD G N +V +A +
Sbjct: 176 GKPVRALGLTDPEEIKQLKMLNLLTSKPVLYVCNV-EEESADKG-NSLSAKVQAMAEEQG 233
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA +EAE+ +L EE+ EY+A +G+ E GL LIR+ Y LL L TYFT+G KET
Sbjct: 234 AASVVISAAIEAEIAQLEDEEQREYMADMGLEEPGLDRLIRAGYGLLELITYFTAGPKET 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI AG APQAAGVIH+DFE+GFIRA+T+AY+D+V G A+E G R EGK+YI
Sbjct: 294 RAWTIVAGTKAPQAAGVIHTDFERGFIRAQTIAYNDYVELGGETPAKEAGKARDEGKEYI 353
Query: 411 VQEGDVMLFRFN 422
VQ+GDV+LF+FN
Sbjct: 354 VQDGDVLLFKFN 365
>gi|222086601|ref|YP_002545135.1| GTP-dependent nucleic acid-binding protein EngD [Agrobacterium
radiobacter K84]
gi|398378250|ref|ZP_10536416.1| GTP-binding protein YchF [Rhizobium sp. AP16]
gi|221724049|gb|ACM27205.1| GTP-binding protein [Agrobacterium radiobacter K84]
gi|397725463|gb|EJK85914.1| GTP-binding protein YchF [Rhizobium sp. AP16]
Length = 367
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 268/373 (71%), Gaps = 12/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMEQLAQIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
+P +D + I EL+ SDL+ +E+R E+ +K GK K+S + L +E + L +
Sbjct: 121 NPVADAETIETELMLSDLESLERRTEQTRKRATGKDKESMAMLP-----LMEASLKLLNE 175
Query: 232 GKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKP R++ L+D E +K L LLT P++YV NVAE+D N H V +A +
Sbjct: 176 GKPVRTLLSKLDDEELRILKSLNLLTSHPVLYVCNVAEADAV--AGNEHTAAVAAMAKEQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
S V ISA +EAE+ +LP++E +E+L+ LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 234 NSEVVIISAAIEAEVAQLPADEAMEFLSELGLKEAGLDQLIRAGYKLLHLITYFTVGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWTI G APQAAGVIHSDFE+GFIRA+T+AY D++A A+E G +RSEGK+Y
Sbjct: 294 TRAWTIEEGTKAPQAAGVIHSDFERGFIRAQTIAYSDYIAFKGEVGAKENGKMRSEGKEY 353
Query: 410 IVQEGDVMLFRFN 422
+VQ+GDV+ F FN
Sbjct: 354 VVQDGDVLNFLFN 366
>gi|421237338|ref|ZP_15693929.1| GTP-binding protein [Streptococcus pneumoniae 2071004]
gi|395599915|gb|EJG60076.1| GTP-binding protein [Streptococcus pneumoniae 2071004]
Length = 371
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR + D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARIIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|421187524|ref|ZP_15644883.1| GTPase, translation factor [Oenococcus oeni AWRIB419]
gi|399968732|gb|EJO03164.1| GTPase, translation factor [Oenococcus oeni AWRIB419]
Length = 367
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 194/369 (52%), Positives = 270/369 (73%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + +
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGVVEVPDSRLARIQEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+ D+I++VVR FED++I HV GKV
Sbjct: 60 ADKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQTDAIIEVVRAFEDSEITHVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D++ IN EL+ +D++QI+K K++K A +S+ K AE L+KI+ L GKP
Sbjct: 120 DPIADIETINTELIIADMEQIDKCYSKIEKA-AVNSKDKAAIAEYNVLKKIKPVLEAGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ ++ E+ + L LT KP++YVAN++E D+ADP S+ + + A+ + +
Sbjct: 179 VRSLQFDEEEKKIVHNLFFLTDKPMLYVANISEGDMADPASSQFYQAISDYAAKDGAEVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++A+ E E++E+ ++ ++L GVSE GL LIR+ Y LLGLRT+FT+G KET+AWT
Sbjct: 239 GLAAKTEEEISEMDQADKADFLEMAGVSEPGLNKLIRAAYHLLGLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++GM APQ AG+IHSDFE+GFIRAET+++ D GS+AA + G LRSEGK+Y+VQ+G
Sbjct: 299 FKSGMKAPQVAGIIHSDFERGFIRAETISFPDLDKLGSVAAVKAAGKLRSEGKEYLVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIINFRFNV 367
>gi|422877630|ref|ZP_16924100.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1056]
gi|332359492|gb|EGJ37311.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
sanguinis SK1056]
Length = 371
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 201/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDDRLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SEFVDPMADIETINLELILADLESINKRYARVEK-MARTQKDKDSVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DG AR++ + E+ +K L LLT KP++YVANV+E ++ DP + +V ++ A+
Sbjct: 179 DGLSARTIEFTEEEQKIVKGLFLLTTKPVLYVANVSEDEVDDPDNIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKSEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM +PQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKSPQAAGIIHSDFEKGFIRAVTMSYDDLVHYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|255020867|ref|ZP_05292923.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus ATCC 51756]
gi|340781436|ref|YP_004748043.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus SM-1]
gi|254969658|gb|EET27164.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus ATCC 51756]
gi|340555589|gb|AEK57343.1| GTP-binding and nucleic acid-binding protein YchF
[Acidithiobacillus caldus SM-1]
Length = 363
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL L+ + K
Sbjct: 1 MSLACGIVGLPNVGKSTLFNAITKAGIA-AENYPFCTIEPNVGIVEVPDTRLQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK VPA++EFVDIAGLV GA+QGEGLGN+FL+HIRE +I V RCF D+++VHV G+V
Sbjct: 60 PQKVVPATMEFVDIAGLVAGAAQGEGLGNQFLAHIRETAAIALVTRCFVDDNVVHVQGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D+DV+ EL+ +DL +EK ++++K +AK Q++ + AE A L+++ L G+P
Sbjct: 120 DPVADLDVVLTELILADLSTVEKAQQRVQK-QAKGGQAEAR-AELALLQRLLPHLDSGQP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSGR 293
A S++L + ER + LCLL+ KP++ +ANV E +L D P P + +D + R
Sbjct: 178 ASSLSLTEEERQRLVPLCLLSAKPMLVIANVHEDELRDGPWRQP-----LEAWADARGAR 232
Query: 294 VT-ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +EAEL ELP E+ E+L LG++E GL +IRS Y LLGL TYFT+GEKE +A
Sbjct: 233 VVPVCAAIEAELAELPPAEQQEFLQDLGLAEPGLNRIIRSAYGLLGLETYFTAGEKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT G TAPQAAGVIHSDFE+GFIRAE +A++DFV + ARE G +R EGK+Y V+
Sbjct: 293 WTYPKGATAPQAAGVIHSDFERGFIRAEVIAFEDFVHYRGESGAREAGKMRLEGKEYRVR 352
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 353 DGDVMHFRFNV 363
>gi|302038467|ref|YP_003798789.1| GTP-dependent nucleic acid-binding protein EngD [Candidatus
Nitrospira defluvii]
gi|300606531|emb|CBK42864.1| GTP-dependent nucleic acid-binding protein EngD [Candidatus
Nitrospira defluvii]
Length = 363
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/371 (55%), Positives = 265/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MS++ GIVGLPNVGKSTLFNA+ ++G A A N+PFCTIEPN+GIV VPD R+ L+ + K
Sbjct: 1 MSVKCGIVGLPNVGKSTLFNALTKSGIA-AENYPFCTIEPNIGIVEVPDARMQALADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ A+ EFVDIAGLV GAS+GEGLGN+FL++IRE D I+ VVRCFED+++VHV GKV
Sbjct: 60 PQRMQYATTEFVDIAGLVAGASKGEGLGNQFLANIRETDGIVNVVRCFEDDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAA--LEKIQQALMDG 232
DP SD+ I EL +DL +EK E+ K +S KDA K L ++ L +G
Sbjct: 120 DPISDIATIVTELALADLTTVEKAQER----NVKLVRSGDKDAAKLGELLVQVAACLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR++ L+ +R +K LCLLTMKP++YVANVAE + NP + V A+ +
Sbjct: 176 KPARTLKLDPAQRALLKPLCLLTMKPVMYVANVAEKGFTN---NPLLTRVEEYAAHEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ L EE+ E+LA +G++E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAICAALESEIAVLSDEEKREFLADIGMNEPGLNRLIRAAYQLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH DFEKGFIRAE + Y+DF+A A A+EKG +R EGK+Y+VQ
Sbjct: 293 WTIHIGDTAPQAAGVIHGDFEKGFIRAEVIGYNDFIACKGEAGAKEKGKMRLEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 353 DGDVMHFRFNV 363
>gi|407940639|ref|YP_006856280.1| GTP-binding protein YchF [Acidovorax sp. KKS102]
gi|407898433|gb|AFU47642.1| GTP-binding protein YchF [Acidovorax sp. KKS102]
Length = 364
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/371 (54%), Positives = 269/371 (72%), Gaps = 9/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIH 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +DL +EK + + K AK KDA K A L +IQ AL +G
Sbjct: 120 DPISDIEVIQTELCLADLGTVEKALNRYTKA-AKSGND--KDAAKLVALLTRIQAALNEG 176
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + + A+ +
Sbjct: 177 KPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKDYAASQNAP 233
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +A
Sbjct: 234 VVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVRA 293
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH DFE+GFIRA+T+A++DF+A A++ G +R+EGK+Y+V+
Sbjct: 294 WTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFEDFIAYKGEQGAKDAGKMRAEGKEYVVK 353
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 354 DGDVLNFLFNV 364
>gi|260431156|ref|ZP_05785127.1| GTP-binding protein YchF [Silicibacter lacuscaerulensis ITI-1157]
gi|260414984|gb|EEX08243.1| GTP-binding protein YchF [Silicibacter lacuscaerulensis ITI-1157]
Length = 365
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 261/369 (70%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAANFPFCTIEPNVG VAVPD RL L+ ++K
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTKTAAAQAANFPFCTIEPNVGDVAVPDARLDKLAAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQIIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D + I EL+ +DL+ IEKR L +K K D +++ +D AA QQ L DGK
Sbjct: 121 DPVADAETIETELMLADLESIEKRRANLVRKLKGNDKEAQQQDRLLAA---AQQMLEDGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR V ++D + + K L LLT KP++YV NV+E D A N + V +A++ +
Sbjct: 178 PARLVEVSDEDAKAWKNLQLLTTKPVLYVCNVSEEDAAT--GNEYSERVAKMAAEQGNAH 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V ISA++E E++ L +E +L +G+ E GL LIR+ Y LL L TYFT G KE +AW
Sbjct: 236 VIISAKIEEEISLLEPDEAQMFLQEMGLEEPGLDRLIRAGYDLLKLETYFTVGPKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TIR G APQAAGVIH DFEKGFIRAET+AYDDFVA A+E G +R+EGK Y+V++
Sbjct: 296 TIRRGTLAPQAAGVIHGDFEKGFIRAETIAYDDFVACNGEQGAKEAGKMRAEGKSYVVKD 355
Query: 414 GDVMLFRFN 422
GDV+ F FN
Sbjct: 356 GDVLHFLFN 364
>gi|414160172|ref|ZP_11416443.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
simulans ACS-120-V-Sch1]
gi|410878822|gb|EKS26692.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
simulans ACS-120-V-Sch1]
Length = 365
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/372 (53%), Positives = 270/372 (72%), Gaps = 10/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLDALADIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKVLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++VIN+ELV +DL+ ++K R+EK+ + K KD+ ++++ LE+I++AL +
Sbjct: 120 DPLDDIEVINMELVLADLESVDKRLPRLEKMARQKDKDALNEVR-----ILERIKEALEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+P RS+ N+ + +KQ LLT KP+IY+ANV E D + N V + A S
Sbjct: 175 GEPIRSLEFNEEDAKYVKQAQLLTSKPMIYIANVGE-DEVNEADNEKVQTIKEYADKEGS 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ ISA++E E+ L E++ +L LG+ E GL LIRSTY+LLGL TYFT+G +E +
Sbjct: 234 EVIVISAKIEEEIATLDDEDKDMFLEDLGIEEPGLNRLIRSTYNLLGLATYFTAGVQEVR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A+E G +R EGK+YI+
Sbjct: 294 AWTFKKGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVENNGEQGAKEAGKMRLEGKEYIM 353
Query: 412 QEGDVMLFRFNV 423
Q+GDV+ FRFNV
Sbjct: 354 QDGDVVHFRFNV 365
>gi|409402263|ref|ZP_11251853.1| GTP-binding protein YchF [Acidocella sp. MX-AZ02]
gi|409129123|gb|EKM98990.1| GTP-binding protein YchF [Acidocella sp. MX-AZ02]
Length = 364
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 264/369 (71%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPD R+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGRVAVPDKRMGALAEIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK VP S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G +
Sbjct: 61 SQKQVPTSLEFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGSI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D + + EL+ +DL+ + KR+ L+K KAK S K AE +E + + L +GKP
Sbjct: 121 DPVRDAETVETELMLADLESLTKRVPLLQK-KAK-SNDKAAAAELELIEPLIKLLEEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R+ + E +++K+L LLT KP++YV NV E+ A N V +A + V
Sbjct: 179 VRT-AIPKGEEEAVKRLNLLTSKPVLYVCNVEEAAAAT--GNAQSARVAEMAKAQGAAHV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA +EAE+++LP E+R +LA LG+ +SGL +IR+ Y LLGL TYFT G KET+AWT
Sbjct: 236 IISAAIEAEVSQLPDEDRAGFLADLGLEDSGLDRIIRAGYQLLGLITYFTVGPKETRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP AAGVIH DFE+GFI AET+AYDD+VA A AR+ G LR EGK+Y+V++G
Sbjct: 296 IIKGTKAPGAAGVIHGDFERGFIAAETIAYDDYVANKGEAGARDTGKLRVEGKEYVVKDG 355
Query: 415 DVMLFRFNV 423
DVMLFRFNV
Sbjct: 356 DVMLFRFNV 364
>gi|450029223|ref|ZP_21832651.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans G123]
gi|449194644|gb|EMB95994.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans G123]
Length = 371
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/373 (54%), Positives = 269/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKEADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|405756911|ref|YP_006680375.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2540]
gi|404226111|emb|CBY77473.1| GTP-dependent nucleic acid-binding protein [Listeria monocytogenes
SLCC2540]
Length = 366
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 271/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDYRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAASENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|387625547|ref|YP_006061719.1| putative GTP-binding protein [Streptococcus pneumoniae INV104]
gi|301793329|emb|CBW35688.1| putative putative GTP-binding protein [Streptococcus pneumoniae
INV104]
Length = 371
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD++ FRFNV
Sbjct: 359 VQDGDIIEFRFNV 371
>gi|284800335|ref|YP_003412200.1| translation-associated GTPase [Listeria monocytogenes 08-5578]
gi|284993520|ref|YP_003415288.1| translation-associated GTPase [Listeria monocytogenes 08-5923]
gi|284055897|gb|ADB66838.1| translation-associated GTPase [Listeria monocytogenes 08-5578]
gi|284058987|gb|ADB69926.1| translation-associated GTPase [Listeria monocytogenes 08-5923]
Length = 366
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K+++A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLREAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A S
Sbjct: 175 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAESENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|225377860|ref|ZP_03755081.1| hypothetical protein ROSEINA2194_03519 [Roseburia inulinivorans DSM
16841]
gi|225210298|gb|EEG92652.1| hypothetical protein ROSEINA2194_03519 [Roseburia inulinivorans DSM
16841]
Length = 366
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/370 (55%), Positives = 275/370 (74%), Gaps = 7/370 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A +AN+PF TI+PNVGIV+VPD R+ L L ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-ALSANYPFATIDPNVGIVSVPDERIVKLGELYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED +I+HV+G +DP
Sbjct: 60 KVTPATIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDTNIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K+ K +A+ ++ K+ E +E I+ L GK AR
Sbjct: 120 ARDIETINLELIFSDIEILDRRIAKISK-QARMDKTLAKELE--LVEAIKAHLEAGKMAR 176
Query: 237 SVTLNDFERDSI--KQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGR 293
S + D E I K LLT KP IY ANVAE DLAD G SNPHV +V +A + +
Sbjct: 177 SFEVPDDEDAEIWFKGYNLLTAKPTIYAANVAEDDLADDGASNPHVAKVREMAKEEGAEV 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
I AQ+E EL EL +E+ EYL LGV+ SGL L+ ++YSLLGL ++ T+GE E +AW
Sbjct: 237 FVICAQIEQELAELDEDEKKEYLDDLGVTSSGLDKLVAASYSLLGLISFLTAGEDECRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IH+DFE+GFI+AE V Y D + GSLAAAREKG++ EGK+Y+V++
Sbjct: 297 TIKKGTKAPQAAGKIHTDFERGFIKAEVVNYQDLLDNGSLAAAREKGIVGMEGKEYVVKD 356
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 357 GDVILFRFNV 366
>gi|331700963|ref|YP_004397922.1| GTP-binding protein YchF [Lactobacillus buchneri NRRL B-30929]
gi|329128306|gb|AEB72859.1| GTP-binding protein YchF [Lactobacillus buchneri NRRL B-30929]
Length = 366
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/370 (53%), Positives = 270/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDKRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D INLEL +DLD + KR+ K+++ K D ++K AE A LEKI+ L DG
Sbjct: 120 DPLDDIDTINLELGIADLDSVNKRLGKVQRAAKGNDKEAK---AELAVLEKIKPVLEDGG 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
RS+ +D E+ +K L LLT KP++YVAN+AE D+ADP ++ + E+ A+ +
Sbjct: 177 SVRSIDFDDDEQKIVKGLFLLTSKPVLYVANIAEDDMADPENSKYFPEIREFAAKEGAEA 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ++A E E+ +L +E+ E+L + GV E GL LIR++Y LLGL+T+FT+G KET+AW
Sbjct: 237 IAVAAGPEEEIAQLDDDEKAEFLEAEGVKEPGLNRLIRASYKLLGLQTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + G APQAAG+IHSDFE+GFIRAE +A+DD + AA +E G LR EGKDY++Q+
Sbjct: 297 TFKKGTKAPQAAGIIHSDFERGFIRAEVMAFDDLDKLETPAAVKEAGKLRLEGKDYVMQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVEFRFNV 366
>gi|323340447|ref|ZP_08080703.1| GTP-dependent nucleic acid-binding protein EngD [Lactobacillus
ruminis ATCC 25644]
gi|417973258|ref|ZP_12614122.1| GTP-binding protein YchF [Lactobacillus ruminis ATCC 25644]
gi|323092136|gb|EFZ34752.1| GTP-dependent nucleic acid-binding protein EngD [Lactobacillus
ruminis ATCC 25644]
gi|346330379|gb|EGX98634.1| GTP-binding protein YchF [Lactobacillus ruminis ATCC 25644]
Length = 367
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 266/369 (72%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D +I HV+ KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDENITHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D IN+ELV +DL+ + KR +++K A+ + K AE L KI+ L +GKP
Sbjct: 120 DPLDDIDTINMELVLADLESVNKRYARVEK-VARTQKDKDSIAEFNVLSKIKPVLEEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ +D E+ +K L LLT KP++YVAN+ E D+ADP S + ++ N A S +
Sbjct: 179 VRSLEFDDDEQKIVKGLFLLTSKPVLYVANIGEDDMADPDSCEYYQQIKNFAESEGSQAL 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A+ E E+ EL +E+ E+L + GV ESGL LI+++Y LLGL T+FT+G KET+AWT
Sbjct: 239 AVCARTEEEIAELDDDEKQEFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AGVIHSDFE+GFIRAETV+++D GS+ RE G LR EGKDY+VQ+G
Sbjct: 299 FKQGMKAPQVAGVIHSDFERGFIRAETVSFEDLDKYGSMQGVREAGRLRLEGKDYVVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|424788786|ref|ZP_18215536.1| 50S ribosome-binding GTPase family protein [Streptococcus
intermedius BA1]
gi|422112566|gb|EKU16353.1| 50S ribosome-binding GTPase family protein [Streptococcus
intermedius BA1]
Length = 371
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 274/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG V VPD RL L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGRVEVPDVRLDKLTELIK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
QK V + EF DIAG+VKGAS+GEGLGN+FL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PQKKVATTFEFTDIAGIVKGASKGEGLGNQFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPMADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFQVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV+E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKRLFLLTTKPVLYVANVSEDEVADPDNIKYVQQIRKFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+++E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKIEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGTIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|456062478|ref|YP_007501448.1| GTP-binding protein YchF [beta proteobacterium CB]
gi|455439775|gb|AGG32713.1| GTP-binding protein YchF [beta proteobacterium CB]
Length = 364
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 268/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 PERILPATVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDANVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+ VI+ EL SDL +EK +++ K AK K A A L K+Q L +P
Sbjct: 120 DPISDIAVIDTELALSDLTTVEKTLQRSSKA-AKSGNDKEAAALVAVLTKVQAHLDQAQP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ L+D E +K LCL+T KP +Y+ANV E +NPH+ V+ A+ + V
Sbjct: 179 VRSLKLSDEENLLLKPLCLITAKPAMYIANVKEDGF---DNNPHLEAVIQHAAKEGAPVV 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L +++E+LA LG+ ESGL +IR+ Y LLGL+TYFT+G KE +AWT
Sbjct: 236 AVCAAIEAEIADLDDADKLEFLADLGMEESGLDRVIRAGYKLLGLQTYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIH+DFE+GFIRA+T+A++DF+ + A+E G +R+EGK+Y+V++G
Sbjct: 296 IHQGDTAPQAAGVIHTDFERGFIRAQTIAFEDFIQFKGESGAKEAGKMRAEGKEYVVKDG 355
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 356 DVLNFLFNV 364
>gi|449908102|ref|ZP_21793490.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans OMZ175]
gi|449263176|gb|EMC60608.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans OMZ175]
Length = 371
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDGEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|343526125|ref|ZP_08763076.1| GTP-binding protein YchF [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343395015|gb|EGV07561.1| GTP-binding protein YchF [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 371
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDVRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G+ ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDREEFLEAMGLDESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|416174189|ref|ZP_11609150.1| GTP-binding protein EngD [Neisseria meningitidis OX99.30304]
gi|325129577|gb|EGC52401.1| GTP-binding protein EngD [Neisseria meningitidis OX99.30304]
Length = 363
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|440227380|ref|YP_007334471.1| GTP-binding protein YchF [Rhizobium tropici CIAT 899]
gi|440038891|gb|AGB71925.1| GTP-binding protein YchF [Rhizobium tropici CIAT 899]
Length = 367
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/374 (53%), Positives = 264/374 (70%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRKLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKELIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQA----LM 230
+P +D + I EL+ +DL+ +E+R E+ +K ++ KD E A+ I A L
Sbjct: 121 NPVADAETIETELMLADLESLERRTEQTRK------RATSKDKESMAMLPIMDASLALLQ 174
Query: 231 DGKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
+GKP R++ L+ E +K L LLT P++YV NVAE D A N H V +A +
Sbjct: 175 EGKPVRTLLSKLDAEETRILKGLNLLTSHPVLYVCNVAEGDAAT--GNEHTAAVAAMAKE 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
S V ISA +EAE+ +LP EE E+L++LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QNSEVVIISAAIEAEVAQLPDEEAKEFLSALGLDEAGLDRLIRAGYKLLHLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++A A+E G R EGK+
Sbjct: 293 ETRAWTIETGTKAPQAAGVIHSDFERGFIRANTIAYDDYIAYNGETGAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFN 422
Y+VQ+GDV+ FRFN
Sbjct: 353 YVVQDGDVIHFRFN 366
>gi|255527768|ref|ZP_05394621.1| GTP-binding protein YchF [Clostridium carboxidivorans P7]
gi|296187069|ref|ZP_06855468.1| GTP-binding protein YchF [Clostridium carboxidivorans P7]
gi|255508555|gb|EET84942.1| GTP-binding protein YchF [Clostridium carboxidivorans P7]
gi|296048356|gb|EFG87791.1| GTP-binding protein YchF [Clostridium carboxidivorans P7]
Length = 366
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/368 (53%), Positives = 269/368 (73%), Gaps = 3/368 (0%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV+SI+ VVRCF+D ++VHV+G +DP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVESIVHVVRCFDDPNVVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLELVFSD++ +++R+EK+ K AK SK +E + K+++ L DG P R
Sbjct: 120 IRDIETINLELVFSDIEVMDRRIEKIVK-LAKSGSSKEAKSEYELMLKVKKHLEDGNPVR 178
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRVT 295
++ L + E + +K LLT KP++YV N++E DL N +V +V AS S +
Sbjct: 179 TLELTEDESEIVKGYFLLTTKPVLYVGNISEDDLISGNLENDYVKKVKEYASKESSEVIV 238
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++E EL+ L +E+ E L G+ E+GL LI ++Y LLGL ++ T+G +E +AWT+
Sbjct: 239 ISAKIEEELSTLDDDEKKEMLEEYGLDEAGLDKLIHASYKLLGLMSFLTAGVQEVRAWTV 298
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
+ G AP+AAG IH+D E+GFIRAE V+YD V GS AAA+EKG R EGKDYI+Q+GD
Sbjct: 299 KNGTKAPKAAGKIHTDIERGFIRAEIVSYDKLVECGSEAAAKEKGYFRLEGKDYIMQDGD 358
Query: 416 VMLFRFNV 423
++ FRFNV
Sbjct: 359 IVNFRFNV 366
>gi|78188550|ref|YP_378888.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium
chlorochromatii CaD3]
gi|78170749|gb|ABB27845.1| conserved hypothetical protein [Chlorobium chlorochromatii CaD3]
Length = 363
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSLR GIVGLPNVGKSTLFNA+ +A+AAN+PFCTIEPNVG V VPD R+ ++ + K
Sbjct: 1 MSLRCGIVGLPNVGKSTLFNAITAK-QAEAANYPFCTIEPNVGTVLVPDERMQQIANVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ VPA +E VDIAGLVKGAS+GEGLGN+FLSHIREVD+I+ VVRCFED +I+HV GK+
Sbjct: 60 TPTLVPAVLEIVDIAGLVKGASKGEGLGNQFLSHIREVDAIVHVVRCFEDENIIHVQGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG--KAKDSQSKLKDAEKAALEKIQQALMDG 232
DP D+ I EL+ +DLD +E+RM++L+K K K+ Q ++ AEK I AL +G
Sbjct: 120 DPVDDIATIETELMLADLDSMERRMDRLRKNVRKEKELQQQVDVAEK-----IIAALSEG 174
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
P R + E+ KQ L++ KPI++ ANVAE DL P N H +V +A++ +
Sbjct: 175 TPVRKILETPEEQQIAKQFFLISSKPILFAANVAEGDL--PNGNAHTAKVAEIAAEHGAK 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
+ ISA+ EAE+ ELP EER E+L SLG+ SGL LI+S + LLGL+TYFT+GEKE A
Sbjct: 233 MIIISAKTEAEIAELPEEERPEFLESLGLHSSGLDRLIQSAHDLLGLQTYFTAGEKEVHA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTIR G AP+AAG IHSDFEKGFIRAE + Y D + GS +E G LRSEGK+YIV+
Sbjct: 293 WTIRKGAAAPEAAGAIHSDFEKGFIRAEVMYYKDLLELGSEHKVKEAGKLRSEGKEYIVR 352
Query: 413 EGDVMLFRFNV 423
+GD+++FRFNV
Sbjct: 353 DGDIIVFRFNV 363
>gi|33599894|ref|NP_887454.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
bronchiseptica RB50]
gi|33567491|emb|CAE31404.1| conserved hypothetical protein [Bordetella bronchiseptica RB50]
Length = 363
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIINVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL EK + + +K ++S KDA++ LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKDAQRLVTVLEKCIAQLNQA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A +
Sbjct: 176 KPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE +A
Sbjct: 233 MVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G +R+EGK+Y+V+
Sbjct: 293 WTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAGKMRAEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|238021765|ref|ZP_04602191.1| hypothetical protein GCWU000324_01668 [Kingella oralis ATCC 51147]
gi|237866379|gb|EEP67421.1| hypothetical protein GCWU000324_01668 [Kingella oralis ATCC 51147]
Length = 363
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/371 (56%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMDALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK M L++GK ++S KDA+K A EK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAM--LREGK--KAKSGDKDAQKLVALCEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS+ L+ +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 176 KPVRSLGLDAESLALLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLRELAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL +E+ E+LA +G+ E+GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAALESEIAELADDEKAEFLAEMGMEEAGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFVA G A A+E G +R+EGK+YIVQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVALGGEAKAKEAGKMRAEGKEYIVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVIHFLFNV 363
>gi|414168419|ref|ZP_11424478.1| GTP-binding protein YchF [Afipia clevelandensis ATCC 49720]
gi|410887691|gb|EKS35498.1| GTP-binding protein YchF [Afipia clevelandensis ATCC 49720]
Length = 365
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 259/371 (69%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL LS ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLSAIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD++ VVRCFED+DI HV GK+
Sbjct: 61 SAQIIPTQLTFVDIAGLVRGASKGEGLGNQFLANIREVDAVAHVVRCFEDSDITHVEGKI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
P +D++ I EL+ +DLD +EKR++ L KG KDS+ +L E+A + L D
Sbjct: 121 APLADIETIETELMLADLDSLEKRVDNLSKKAKGGDKDSKEQLDLVERAL-----KLLRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP R + E + + L LLT KP++YV NV E A N V + A +
Sbjct: 176 GKPTRGMERKPEEERNFRMLGLLTSKPVLYVCNVEEGSAAT--GNSFSQAVFDHAKKEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +
Sbjct: 234 VAVVISAKIESEIATLSREERVDFLDTLGLEEAGLDRLIRAGYELLHLITYFTVGPKEAR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP AAGVIH+DFEKGFIRAET+AY+D+VA A AR+ G LR EGK+YIV
Sbjct: 294 AWTITKGTKAPAAAGVIHTDFEKGFIRAETIAYEDYVALNGEAGARDAGKLRLEGKEYIV 353
Query: 412 QEGDVMLFRFN 422
+GDVM FRFN
Sbjct: 354 ADGDVMHFRFN 364
>gi|225849774|ref|YP_002730008.1| GTP-dependent nucleic acid-binding protein EngD [Persephonella
marina EX-H1]
gi|225646271|gb|ACO04457.1| GTP-binding protein YchF [Persephonella marina EX-H1]
Length = 370
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 203/374 (54%), Positives = 265/374 (70%), Gaps = 9/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L GIVGLPNVGKST+FNA+ E KA AN+PFCTI+PNVGIV +PD RL L+ + +
Sbjct: 1 MKLNVGIVGLPNVGKSTIFNALTETAKAGVANYPFCTIDPNVGIVDLPDARLEKLAQIER 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ VPA++EFVDIAGLVKGAS+GEGLGN+FLS+IR V +I VVRCFED+D+VHV G V
Sbjct: 61 SKRIVPATIEFVDIAGLVKGASKGEGLGNQFLSNIRNVSAIAHVVRCFEDSDVVHVEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D ++I EL+ +DL +EKR++K +K K + ++K E LEK ++ L D K
Sbjct: 121 NPVRDAEIIETELILADLQTVEKRLDKVIKPAKTGNKEAKF---EVQVLEKAKKILEDLK 177
Query: 234 PARSVTLNDFERDSI----KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
P RS T + FE + I K + LT+KP++YVAN+ E L + N +V + A
Sbjct: 178 PLRSFT-DQFEEEEIDYMRKTIFPLTLKPVMYVANIDEEYLPEGEDNEYVKAIKEKAEKE 236
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V + +VE EL E+P EER E L + G+SE GL +IR+ + LL L TYFT+GEKE
Sbjct: 237 NAPVVVLCGKVEQELIEIPKEERGELLEAYGLSEPGLNKMIRTGFRLLDLITYFTAGEKE 296
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
+AWTI+ G APQAAG IHSDFE+GFI AE + Y+D + AGSL A+E+GLLR EGKDY
Sbjct: 297 ARAWTIKRGTKAPQAAGEIHSDFERGFIAAEVINYEDLIKAGSLQKAKEQGLLRIEGKDY 356
Query: 410 IVQEGDVMLFRFNV 423
IVQ+GDV+ FRFNV
Sbjct: 357 IVQDGDVIHFRFNV 370
>gi|258424584|ref|ZP_05687461.1| GTP-binding protein YchF [Staphylococcus aureus A9635]
gi|417890672|ref|ZP_12534744.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21200]
gi|418283769|ref|ZP_12896508.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21202]
gi|418309151|ref|ZP_12920725.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21194]
gi|418560277|ref|ZP_13124796.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21252]
gi|418888280|ref|ZP_13442419.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1524]
gi|418993090|ref|ZP_13540731.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG290]
gi|257845179|gb|EEV69216.1| GTP-binding protein YchF [Staphylococcus aureus A9635]
gi|341854445|gb|EGS95315.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21200]
gi|365166298|gb|EHM57965.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21202]
gi|365234999|gb|EHM75921.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21194]
gi|371972404|gb|EHO89785.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21252]
gi|377748075|gb|EHT72038.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG290]
gi|377756893|gb|EHT80790.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1524]
Length = 365
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +GK
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM---EVRILTTIKEALENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ ND ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 177 PARSIDFNDEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G R EGK+YI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|421543085|ref|ZP_15989184.1| putative GTP-binding protein [Neisseria meningitidis NM255]
gi|402315755|gb|EJU51313.1| putative GTP-binding protein [Neisseria meningitidis NM255]
Length = 363
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|171462965|ref|YP_001797078.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
necessarius STIR1]
gi|171192503|gb|ACB43464.1| GTP-binding protein YchF [Polynucleobacter necessarius subsp.
necessarius STIR1]
Length = 364
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/369 (54%), Positives = 267/369 (72%), Gaps = 5/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P +VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED +++HV GK+
Sbjct: 60 SERILPTAVEFVDIAGLVAGASKGEGLGNQFLANIRETDAITHVVRCFEDPNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +D+ VI+ EL SDL +EK + + K AK K A A L K+Q L P
Sbjct: 120 DPIADIGVIDTELALSDLATVEKTLNRSSKA-AKSGNDKEAAALVAVLTKVQAHLDSALP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ L+D E+ IK LCL+T KP +YVANV E ++ N H+ V A+ ++ +
Sbjct: 179 VRSLNLSDDEKLLIKPLCLITAKPAMYVANVKEGGFSN---NSHLEAVKQHAAKERAPVI 235
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +EAE+ +L +++E+LA LG+ E GL +IR+ Y+LLGL+TYFT+G KE +AWT
Sbjct: 236 AVCAAIEAEIADLEEADKIEFLADLGMEEPGLDRVIRAGYALLGLQTYFTAGVKEVRAWT 295
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAPQAAGVIH+DFE+GFIRA+T++YDDFV A A+E G +R+EGK+Y+V++G
Sbjct: 296 IHQGDTAPQAAGVIHADFERGFIRAQTISYDDFVQFKGEAGAKEAGKMRAEGKEYVVKDG 355
Query: 415 DVMLFRFNV 423
DV+ F FNV
Sbjct: 356 DVLNFLFNV 364
>gi|449995192|ref|ZP_21822882.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans A9]
gi|449184721|gb|EMB86646.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans A9]
Length = 371
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 269/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D ++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDESVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|419483271|ref|ZP_14023052.1| GTPase family protein [Streptococcus pneumoniae GA40563]
gi|379577200|gb|EHZ42123.1| GTPase family protein [Streptococcus pneumoniae GA40563]
Length = 371
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K E L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVEEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|148997954|ref|ZP_01825467.1| GTP-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|168576114|ref|ZP_02722019.1| GTP-binding protein YchF [Streptococcus pneumoniae MLV-016]
gi|307066640|ref|YP_003875606.1| putative GTPase, probable translation factor [Streptococcus
pneumoniae AP200]
gi|417699624|ref|ZP_12348792.1| GTP-binding protein YchF [Streptococcus pneumoniae GA41317]
gi|418097381|ref|ZP_12734486.1| GTP-binding protein YchF [Streptococcus pneumoniae GA16531]
gi|418149582|ref|ZP_12786341.1| GTPase family protein [Streptococcus pneumoniae GA13856]
gi|419454169|ref|ZP_13994136.1| GTPase family protein [Streptococcus pneumoniae EU-NP03]
gi|419472130|ref|ZP_14011985.1| GTPase family protein [Streptococcus pneumoniae GA07914]
gi|419504967|ref|ZP_14044630.1| GTPase family protein [Streptococcus pneumoniae GA47760]
gi|419507109|ref|ZP_14046767.1| GTPase family protein [Streptococcus pneumoniae GA49194]
gi|421246070|ref|ZP_15702565.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2081685]
gi|421315097|ref|ZP_15765681.1| hypothetical protein SPAR100_2169 [Streptococcus pneumoniae
GA47562]
gi|147755964|gb|EDK63007.1| GTP-binding protein [Streptococcus pneumoniae SP11-BS70]
gi|183578043|gb|EDT98571.1| GTP-binding protein YchF [Streptococcus pneumoniae MLV-016]
gi|306408177|gb|ADM83604.1| Predicted GTPase, probable translation factor [Streptococcus
pneumoniae AP200]
gi|332198661|gb|EGJ12744.1| GTP-binding protein YchF [Streptococcus pneumoniae GA41317]
gi|353766004|gb|EHD46545.1| GTP-binding protein YchF [Streptococcus pneumoniae GA16531]
gi|353810384|gb|EHD90636.1| GTPase family protein [Streptococcus pneumoniae GA13856]
gi|379542857|gb|EHZ08010.1| GTPase family protein [Streptococcus pneumoniae GA07914]
gi|379604153|gb|EHZ68915.1| GTPase family protein [Streptococcus pneumoniae GA47760]
gi|379604556|gb|EHZ69315.1| GTPase family protein [Streptococcus pneumoniae GA49194]
gi|379622307|gb|EHZ86942.1| GTPase family protein [Streptococcus pneumoniae EU-NP03]
gi|395606184|gb|EJG66293.1| GTPase of unknown function family protein [Streptococcus pneumoniae
2081685]
gi|395911681|gb|EJH22546.1| hypothetical protein SPAR100_2169 [Streptococcus pneumoniae
GA47562]
Length = 371
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R++Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRASYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM A QAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKATQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|33594042|ref|NP_881686.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis Tohama I]
gi|384205345|ref|YP_005591084.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis CS]
gi|33564116|emb|CAE43388.1| conserved hypothetical protein [Bordetella pertussis Tohama I]
gi|332383459|gb|AEE68306.1| GTP-dependent nucleic acid-binding protein EngD [Bordetella
pertussis CS]
Length = 363
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL EK + + +K ++S KDA++ LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKDAQRLVTVLEKCIAQLNQA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A +
Sbjct: 176 KPVRGLDLSDEEQTLIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE +A
Sbjct: 233 MVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G +R+EGK+Y+V+
Sbjct: 293 WTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAGKMRAEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|115523458|ref|YP_780369.1| GTP-dependent nucleic acid-binding protein EngD [Rhodopseudomonas
palustris BisA53]
gi|115517405|gb|ABJ05389.1| GTP-binding protein YchF [Rhodopseudomonas palustris BisA53]
Length = 387
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 209/372 (56%), Positives = 262/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ K
Sbjct: 23 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGEVAVPDPRLDKLAAAGK 82
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD+I VVRCFED+DI HV+GK+
Sbjct: 83 SAQIIPTRLTFVDIAGLVKGASKGEGLGNQFLATIREVDAIAHVVRCFEDSDITHVDGKI 142
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALM--- 230
P +D++ I EL+ +DLD +EKR++ L KK K D KDA K L+ + +AL+
Sbjct: 143 APINDIETIETELMLADLDSLEKRVDNLTKKAKGND-----KDA-KEQLDLVNRALVLLR 196
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G+PAR + E + L LLT KP++YV NV E A+ N VM A +
Sbjct: 197 EGRPARFLERKHEEERAFAMLGLLTSKPVLYVCNVEEGSAAE--GNSFSQAVMARAKEED 254
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KET
Sbjct: 255 AVAVVISAKIESEIATLSREERVDFLDTLGLHEAGLDRLIRAGYELLHLITYFTVGPKET 314
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWTI G APQAA VIHSDFEKGFIRAET+AY+D++ G A AR+ G LR EGK+YI
Sbjct: 315 RAWTITKGTKAPQAAAVIHSDFEKGFIRAETIAYEDYITLGGEAGARDGGKLRLEGKEYI 374
Query: 411 VQEGDVMLFRFN 422
V +GDVM FRFN
Sbjct: 375 VADGDVMHFRFN 386
>gi|347526260|ref|YP_004833008.1| GTP-binding protein [Lactobacillus ruminis ATCC 27782]
gi|345285219|gb|AEN79072.1| GTP-binding protein, probable translation factor [Lactobacillus
ruminis ATCC 27782]
Length = 367
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 266/369 (72%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D +I HV+ KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDENITHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D IN+ELV +DL+ + KR +++K A+ + K AE L KI+ L +GKP
Sbjct: 120 DPLDDIDTINMELVLADLESVNKRYVRVEK-VARTQKDKDSIAEFNVLSKIKPVLEEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ +D E+ +K L LLT KP++YVAN+ E D+ADP S + ++ N A S +
Sbjct: 179 VRSLEFDDDEQKIVKGLFLLTSKPVLYVANIGEDDMADPDSCEYYQQIKNFAESEGSQAL 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A+ E E+ EL +E+ E+L + GV ESGL LI+++Y LLGL T+FT+G KET+AWT
Sbjct: 239 AVCARTEEEIAELDDDEKQEFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AGVIHSDFE+GFIRAETV+++D GS+ RE G LR EGKDY+VQ+G
Sbjct: 299 FKQGMKAPQVAGVIHSDFERGFIRAETVSFEDLDKYGSMQGVREAGRLRLEGKDYVVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|167950645|ref|ZP_02537719.1| translation-associated GTPase [Endoriftia persephone
'Hot96_1+Hot96_2']
gi|345862759|ref|ZP_08814973.1| GTP-dependent nucleic acid-binding protein EngD [endosymbiont of
Tevnia jerichonana (vent Tica)]
gi|345126101|gb|EGW55967.1| GTP-dependent nucleic acid-binding protein EngD [endosymbiont of
Tevnia jerichonana (vent Tica)]
Length = 363
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + A A N+PFCTI+PNVG+V +PDPRL ++G+
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKATIA-AENYPFCTIDPNVGVVPLPDPRLDAIAGIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q +P +++FVDIAGLV+GAS+GEGLGNKFL++IRE D++ QVVRCFE++D+VHV GK+
Sbjct: 60 PQAVLPTTMQFVDIAGLVEGASKGEGLGNKFLANIRETDAVAQVVRCFENDDVVHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP +DV VIN EL +DL+ +EK ++K + +AK K+ A KA LE+I L DGK
Sbjct: 120 DPLADVQVINNELALADLESVEKALDKTIR-QAKTGDKKVL-ARKALLERICDHLYDGKS 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ L+D E I++L LLT+KPI+Y+ANVAE D NPH++ + LAS + V
Sbjct: 178 VRSMALSDDELQEIRELFLLTVKPILYIANVAEDGFED---NPHLDALNTLASAEGAEVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
++ A +EAE+ EL +ER E+L+ LG+ E GL ++R+ Y LLGL TYFT+GEKE +AWT
Sbjct: 235 SVCAAIEAEIVELEEDEREEFLSDLGLDEPGLNRVVRAGYQLLGLETYFTAGEKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I A +APQAAGVIH+DFE+GFIRAE ++YDDFV ARE G LRSEGKDY V++G
Sbjct: 295 IPANASAPQAAGVIHTDFERGFIRAEVISYDDFVKFRGEQGAREAGKLRSEGKDYQVKDG 354
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 355 DIIHFRFNV 363
>gi|322373975|ref|ZP_08048509.1| GTP-binding protein YchF [Streptococcus sp. C150]
gi|321276941|gb|EFX54012.1| GTP-binding protein YchF [Streptococcus sp. C150]
Length = 371
Score = 403 bits (1035), Expect = e-110, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+K++ L
Sbjct: 120 DAFVDPMADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSVAEFNVLQKLKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +++P +V ++ A+
Sbjct: 179 DGKSARTIDFTEEEQKIVKGLFLLTTKPVLYVANVDEDQVSNPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+VE E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARVEEEISELDDEDKEMFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD ++ GS A RE G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLISYGSEKAVREAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|430004267|emb|CCF20058.1| Putative GTP-dependent nucleic acid-binding protein (engD)
[Rhizobium sp.]
Length = 367
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 268/373 (71%), Gaps = 12/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMQKLAQIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGNKFL++IREVD+I+ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNKFLANIREVDAIVHVLRCFEDTDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D + I EL+ +DL+ +E+R+E+ +K GK K+S ++L +E + + L D
Sbjct: 121 DPVGDAETIETELMLADLESLERRVEQTRKRATGKDKESLAQLP-----VMEAVIKLLQD 175
Query: 232 GKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKPAR + T++ E D +K L LLT P++YV NVAE+D A N H V +A++
Sbjct: 176 GKPARLLLKTMSPEEIDILKGLNLLTSHPVLYVCNVAEADAAT--GNAHTEAVSKMAAEQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA +EAE+ +LP +E E+L++LG+ E+GL LIR+ Y+LL L TYFT G KE
Sbjct: 234 GAECVIISAAIEAEVAQLPEDEATEFLSALGLEEAGLDRLIRAGYNLLDLITYFTVGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWTI G APQAAGVIH+DFE+GFIRA T+ YDD++A A+E G R EGK+Y
Sbjct: 294 TRAWTIVRGTKAPQAAGVIHTDFERGFIRAFTIGYDDYIAYKGEVGAKEAGKGRDEGKEY 353
Query: 410 IVQEGDVMLFRFN 422
+V +GDV+ FRFN
Sbjct: 354 VVHDGDVIHFRFN 366
>gi|342162675|ref|YP_004767314.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae IS7493]
gi|341932557|gb|AEL09454.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae IS7493]
Length = 371
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + M APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRSMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|209886300|ref|YP_002290157.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
gi|337740156|ref|YP_004631884.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
gi|386029173|ref|YP_005949948.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM4]
gi|209874496|gb|ACI94292.1| GTP-binding protein YchF [Oligotropha carboxidovorans OM5]
gi|336094241|gb|AEI02067.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM4]
gi|336097820|gb|AEI05643.1| GTP-dependent nucleic acid-binding protein EngD [Oligotropha
carboxidovorans OM5]
Length = 365
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 258/371 (69%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGAVAVPDPRLDKLAEVAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S + +P + FVDIAGLVKGAS+GEGLGN+FL+ IREVD++ VVRCFED+DI HV G++
Sbjct: 61 SAQIIPTQLTFVDIAGLVKGASKGEGLGNQFLATIREVDAVAHVVRCFEDSDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
P D++ I EL+ +DL+ +EKR++ L KG KDS+ +L E+A + L D
Sbjct: 121 APLEDIETIETELMLADLESLEKRVDNLSKKAKGGDKDSKEQLDLVERAL-----KLLRD 175
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKPAR + E + + L LLT KP++YV NV E AD N V A +
Sbjct: 176 GKPARFLERKAEEERAFRMLGLLTSKPVLYVCNVEEGAAAD--GNAFSKAVFEHAKKEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V ISA++E+E+ L EERV++L +LG+ E+GL LIR+ Y LL L TYFT G KE +
Sbjct: 234 VAVAISAKIESEIATLSREERVDFLETLGLEEAGLDRLIRAGYDLLHLITYFTVGPKEAR 293
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G AP AAGVIH+DFEKGFIRAET+AYDD+V G A AR+ G LR EGK+Y+V
Sbjct: 294 AWTITKGTKAPAAAGVIHTDFEKGFIRAETIAYDDYVTLGGEAGARDAGRLRLEGKEYVV 353
Query: 412 QEGDVMLFRFN 422
+GDVM FRFN
Sbjct: 354 ADGDVMHFRFN 364
>gi|336436831|ref|ZP_08616541.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_4_56FAA]
gi|336006650|gb|EGN36683.1| GTP-dependent nucleic acid-binding protein engD [Lachnospiraceae
bacterium 1_4_56FAA]
Length = 365
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/369 (55%), Positives = 270/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K VPA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFED++IVHV+G +DP
Sbjct: 60 KIVPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFEDSNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K D K E L +++ L + K A+
Sbjct: 120 IRDIETINLELIFSDLEILERRIAKTVKLSRND---KTAAKELDLLNRLKAHLEENKMAK 176
Query: 237 SVTLND-FERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
S +D E++ + LLT KP+I+ ANV E DLAD G+ N V V A
Sbjct: 177 SFHTDDEEEQEWLAGYNLLTAKPVIFAANVCEDDLADDGAGNAGVQAVREYAEAEDCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ+E E+ EL EE+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AWT
Sbjct: 237 VVCAQIEQEIAELDDEEKKMFLEDLGLEESGLEKLIKASYHLLGLISYLTAGEPEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V+YDD +A G+ AAA+EKGL+R EGKDY+VQ+G
Sbjct: 297 IKRGTKAPQAAGKIHSDFERGFIRAEIVSYDDLMACGTHAAAKEKGLVRLEGKDYVVQDG 356
Query: 415 DVMLFRFNV 423
D++LFRFNV
Sbjct: 357 DIILFRFNV 365
>gi|405382030|ref|ZP_11035852.1| GTP-binding protein YchF [Rhizobium sp. CF142]
gi|397321518|gb|EJJ25934.1| GTP-binding protein YchF [Rhizobium sp. CF142]
Length = 367
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/374 (54%), Positives = 265/374 (70%), Gaps = 12/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPD R+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDERMQKLANIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRINFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDGDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + I EL+ +DLD +E+R E+ +K GK KDS + L E A+L +Q D
Sbjct: 121 DPVADAETIETELMLADLDSLERRTEQTRKRATGKDKDSMAMLPIME-ASLALLQ----D 175
Query: 232 GKPARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
GKP R++ L+ E +K L LLT P++YV NVAE D A N + V +A
Sbjct: 176 GKPVRTLLSKLDAEETTILKGLNLLTSHPVLYVCNVAEGDAAT--GNQYTEAVAAMAKAQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ VTISA +E+E+ +LP EE E+L++LG+ E+GL LIR+ Y LL L TYFT G KE
Sbjct: 234 GAETVTISAAIESEVAQLPDEEAKEFLSALGLDEAGLDRLIRAGYKLLHLITYFTVGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++ G A+E G R EGK+Y
Sbjct: 294 TRAWTIERGTKAPQAAGVIHSDFERGFIRANTIAYDDYIQFGGEVGAKEAGKARDEGKEY 353
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GDV+ FRFN
Sbjct: 354 VVQDGDVIHFRFNT 367
>gi|402309415|ref|ZP_10828408.1| GTP-binding protein YchF [Eubacterium sp. AS15]
gi|400372382|gb|EJP25326.1| GTP-binding protein YchF [Eubacterium sp. AS15]
Length = 365
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD R+ LS ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDFRVDKLSEINHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVR FED+++VHV+G++ P
Sbjct: 60 KTVHTTIEFVDIAGLVKGASKGEGLGNKFLSHIREVEAIIHVVRAFEDSNVVHVDGEIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K +K D + + E +EKI L +GK AR
Sbjct: 120 LRDIETINLELIFSDIEVLQRRLSKAQKAMKADKKMAV---EVELIEKILAVLEEGKCAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
++ + E + +K LLT KP+IYVANVAE + + G N V ++ + A S V
Sbjct: 177 TIDFTEKELEIVKDFNLLTDKPVIYVANVAEDEASSDGEGNDFVKQIKDFAQSENSQVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++E +L++L EE+ E+L+ +G+ SGL L++++YSLLGL ++ T+GE ET+AWTI
Sbjct: 237 ISAKIEEDLSQLSDEEKKEFLSDMGMEYSGLEKLVKASYSLLGLISFLTTGEDETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLLRSEGKDYIVQEG 414
G AP AAG IHSD ++GFIRAET++Y++ V G+++ AR+KGL+RSEGKDY+V++G
Sbjct: 297 INGTKAPVAAGKIHSDIQRGFIRAETISYEELVEIGGNMSVARDKGLIRSEGKDYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|325266751|ref|ZP_08133425.1| GTP-dependent nucleic acid-binding protein EngD [Kingella
denitrificans ATCC 33394]
gi|324981799|gb|EGC17437.1| GTP-dependent nucleic acid-binding protein EngD [Kingella
denitrificans ATCC 33394]
Length = 363
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 274/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKSG-IEAANYPFCTIEPNVGIVEVPDPRMDELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++I+HV GKV
Sbjct: 60 PQRMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++ I EL +DL +EK + +++GK ++S KDA+K A LEK+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAI--IREGKR--AKSGDKDAQKLVAVLEKLLPHLNEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E ++ L LLT KP +YVANV+E D NPH + + LA +
Sbjct: 176 KPVRSFGLDKDELALLRPLFLLTAKPAMYVANVSEDGFTD---NPHFDRLKALAEQENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+++ EL +E+ E+LA +G+ E+GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 IVAICAAIESDIAELEDDEKAEFLAEMGMEEAGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDF+A G A A+E G +R+EGK+YIVQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFIALGGEAKAKEAGKMRAEGKEYIVQ 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVIHFLFNV 363
>gi|349700868|ref|ZP_08902497.1| GTP-binding protein YchF [Gluconacetobacter europaeus LMG 18494]
Length = 364
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 265/370 (71%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTETASAQAANYPFCTIEPNVGRVAVPDARLANLARIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
SQK +P S+EFVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G V
Sbjct: 61 SQKILPTSLEFVDIAGLVRGASRGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGGV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D ++I EL+ +DL+ +EKR+ L KK + D ++ A+ +E + +AL +GK
Sbjct: 121 DPIRDAEIIETELMLADLESLEKRIVALQKKARGNDREAA---AQVELMEPLIEALREGK 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR + + +++++L L+T KP++YV NV E A N V A + +
Sbjct: 178 PARK-AIPAGQEEAVRRLQLMTSKPVLYVCNVDEGSAAT--GNEFSERVRARAEEEGAAM 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE+++L E+RVE+L LG+ +SGL +I + Y LLGL TYFT G KET+AW
Sbjct: 235 VVVSAAIEAEVSQLGPEDRVEFLEGLGLKDSGLDRVIAAGYRLLGLSTYFTVGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G APQAA VIH+DFE+GFI ET+AYDD++A A ARE G LR EG+DY+VQ+
Sbjct: 295 TITEGTKAPQAAAVIHNDFERGFIACETIAYDDYIACNGEAGAREAGKLRIEGRDYVVQD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVLLFRFNV 364
>gi|449925989|ref|ZP_21800536.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 4SM1]
gi|449161028|gb|EMB64248.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 4SM1]
Length = 371
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDRVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L ++ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTQAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|423069868|ref|ZP_17058653.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
intermedius F0395]
gi|355363742|gb|EHG11478.1| GTP-dependent nucleic acid-binding protein engD [Streptococcus
intermedius F0395]
Length = 371
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 273/373 (73%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDVRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SSFVDPMADIETINLELILADLESINKRYARVEK-VARTQKDKDSVAEFHVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
+G AR++ ++ E+ +K+L LLT KP++YVANV E ++ADP + +V ++ A+
Sbjct: 179 NGLSARTIEFDEEEQKIVKKLFLLTTKPVLYVANVGEDEVADPDNIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G+ ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKAEFLEAMGLDESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|385341311|ref|YP_005895182.1| GTP-binding protein EngD [Neisseria meningitidis M01-240149]
gi|385856607|ref|YP_005903119.1| GTP-binding protein EngD [Neisseria meningitidis NZ-05/33]
gi|325201517|gb|ADY96971.1| GTP-binding protein EngD [Neisseria meningitidis M01-240149]
gi|325207496|gb|ADZ02948.1| GTP-binding protein EngD [Neisseria meningitidis NZ-05/33]
Length = 363
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++Y+DF+A G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYEDFIALGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|450134691|ref|ZP_21871127.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML8]
gi|449149165|gb|EMB52979.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML8]
Length = 371
Score = 403 bits (1035), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 269/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++I EVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIHEVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D++ INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 179 DGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGKDYI
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKDYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|237747437|ref|ZP_04577917.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes HOxBLS]
gi|229378788|gb|EEO28879.1| GTP-dependent nucleic acid-binding protein EngD [Oxalobacter
formigenes HOxBLS]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/371 (52%), Positives = 273/371 (73%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A N+PFCTIEPNVGIV VPDPRL+ L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAG-IPAENYPFCTIEPNVGIVEVPDPRLNELAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA VEFVDIAGLV GAS+GEGLGN+FL+HIRE D+I+QVVRCF+++++VHV GKV
Sbjct: 60 PERILPAVVEFVDIAGLVAGASKGEGLGNQFLAHIRETDAIVQVVRCFQNDNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK--LKKGKAKDSQSKLKDAEKAALEKIQQALMDG 232
DP SD+ VI EL +DL+ +EK +++ K G ++L D LEK+ L
Sbjct: 120 DPLSDIAVIQTELALADLNTVEKVIQREIKKAGSGNKESARLCDL----LEKVAAHLNKA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+P RS+ L+ + + ++ LCL+T KP +YVANV++ + NP ++++ + A +
Sbjct: 176 EPVRSMGLDKEQMELLRPLCLITAKPTMYVANVSDDGFTN---NPLLDQLKHYAVSQNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
VTI A +E+E+ ELP E+R E+L+ +G+ E GL LIR+ + LLGL+TYFT+G KE +A
Sbjct: 233 IVTICAAIESEIVELPEEDRAEFLSDMGMEEPGLNRLIRAAFKLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI AG TAP+AAGVIH+DFE+GFIRA+T++++D++A A+E G +R+EGKDYIV+
Sbjct: 293 WTIHAGDTAPKAAGVIHTDFERGFIRAQTISFEDYIAYKGETGAKEAGKMRAEGKDYIVK 352
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 353 DGDVLNFLFNV 363
>gi|429745224|ref|ZP_19278658.1| GTP-binding protein YchF [Neisseria sp. oral taxon 020 str. F0370]
gi|429161058|gb|EKY03498.1| GTP-binding protein YchF [Neisseria sp. oral taxon 020 str. F0370]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMDALAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAA--LEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K +K+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAIAR----EEKRARSGDKDAQKLVELCKKLLPHLDEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 176 KPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|410418670|ref|YP_006899119.1| hypothetical protein BN115_0874 [Bordetella bronchiseptica MO149]
gi|412339836|ref|YP_006968591.1| hypothetical protein BN112_2537 [Bordetella bronchiseptica 253]
gi|427813137|ref|ZP_18980201.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|427821053|ref|ZP_18988116.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|427823704|ref|ZP_18990766.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
gi|408445965|emb|CCJ57630.1| conserved hypothetical protein [Bordetella bronchiseptica MO149]
gi|408769670|emb|CCJ54454.1| conserved hypothetical protein [Bordetella bronchiseptica 253]
gi|410564137|emb|CCN21678.1| conserved hypothetical protein [Bordetella bronchiseptica 1289]
gi|410572053|emb|CCN20308.1| conserved hypothetical protein [Bordetella bronchiseptica D445]
gi|410588969|emb|CCN04032.1| conserved hypothetical protein [Bordetella bronchiseptica Bbr77]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV GKV
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL EK + + +K ++S KDA++ LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKDAQRLVTVLEKCIAQLNQA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A +
Sbjct: 176 KPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE +A
Sbjct: 233 MVAICAAIESEIVDLPEEDRQAFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G +R+EGK+Y+V+
Sbjct: 293 WTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAGKMRAEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|375111018|ref|ZP_09757230.1| GTP-binding protein YchF [Alishewanella jeotgali KCTC 22429]
gi|393762745|ref|ZP_10351371.1| GTP-binding protein YchF [Alishewanella agri BL06]
gi|397169687|ref|ZP_10493118.1| GTP-binding protein YchF [Alishewanella aestuarii B11]
gi|374568848|gb|EHR40019.1| GTP-binding protein YchF [Alishewanella jeotgali KCTC 22429]
gi|392606367|gb|EIW89252.1| GTP-binding protein YchF [Alishewanella agri BL06]
gi|396088675|gb|EJI86254.1| GTP-binding protein YchF [Alishewanella aestuarii B11]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 264/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V VPD RL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPVPDLRLDKLAQIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGNKFL++IRE D+I VVRCF+D +I+HV GK+
Sbjct: 60 PQRVIPTTMEFVDIAGLVKGASKGEGLGNKFLANIRETDAIGHVVRCFDDENIIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+D IN+ELV SD+D E+ R++K KG KD++++L A LEK++ L +
Sbjct: 120 DPADDIDTINMELVLSDMDSAERAILRVQKKAKGGDKDAKAEL-----AVLEKVKAHLEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G R + L+ E+ I + LT+KP +Y+ANV E +NPH++ V +A+ +
Sbjct: 175 GLTLRQLELDKEEKALIAYMNFLTIKPTMYIANVLEDGF---DNNPHLDVVRGIAAKEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL EE+ E++A +G+ E GL +IR YSLL L TYFT+G KE +
Sbjct: 232 IVVPVCAAIESEIAELDDEEKAEFMADMGLEEPGLNRVIRGGYSLLNLHTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+ G TAPQAAGVIH+DFEKGFIRAE V+YDDFV A A+E G R EGKDYIV
Sbjct: 292 AWTVAVGATAPQAAGVIHTDFEKGFIRAEVVSYDDFVQYNGEAGAKEAGKWRLEGKDYIV 351
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 352 KDGDVMHFRFNV 363
>gi|194290869|ref|YP_002006776.1| gtp-dependent nucleic acid-binding protein engd [Cupriavidus
taiwanensis LMG 19424]
gi|193224704|emb|CAQ70715.1| putative GTP-binding protein with nucleoside triP hydrolase domain,
engD homolog [Cupriavidus taiwanensis LMG 19424]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 269/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAKLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCFED++++HV G+V
Sbjct: 60 PERILPATVEFVDIAGLVAGASKGEGLGNQFLANIRECDAITHVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEK--AALEKIQQALMD 231
DP SD++VIN EL +DL +EK + + +K +A D K+A++ A LEK Q L
Sbjct: 120 DPLSDIEVINTELALADLATVEKALARYVKPARAGD-----KEAQRLVAVLEKAQSVLDQ 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
K R++ L E D+I+ CL+T KP +YVANV E +NPH++ V A S
Sbjct: 175 AKAVRTLDLAPEEWDAIRPFCLITAKPTMYVANVREDGF---DNNPHLDAVREYAKQTDS 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +EAE+ +L ++ E+LA LG+ E GL +IR+ + LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAIEAEIADLDDADKAEFLADLGMEEPGLDRVIRAGFKLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAP+AAGVIH+DFE+GFIRA+T+AYDDF+A A+E G +R+EGK+Y+V
Sbjct: 292 AWTIHVGDTAPKAAGVIHTDFERGFIRAQTIAYDDFIAFKGETGAKEAGKMRAEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
++GDVM F FNV
Sbjct: 352 KDGDVMNFLFNV 363
>gi|116493449|ref|YP_805184.1| GTPase, translation factor [Pediococcus pentosaceus ATCC 25745]
gi|421894881|ref|ZP_16325364.1| GTPase of unknown function family protein [Pediococcus pentosaceus
IE-3]
gi|116103599|gb|ABJ68742.1| Predicted GTPase, probable translation factor [Pediococcus
pentosaceus ATCC 25745]
gi|385272177|emb|CCG90736.1| GTPase of unknown function family protein [Pediococcus pentosaceus
IE-3]
Length = 368
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/374 (52%), Positives = 276/374 (73%), Gaps = 11/374 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDQRLDRIQEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLK---KGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D++ INLEL +DL+ +EKR+ K++ KG+ KD+ ++L A LEK+ L
Sbjct: 120 DPIEDIETINLELSLADLESVEKRLTKVQRAAKGRDKDAVAEL-----AVLEKLHPVLEA 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS--DL 289
GK AR++ ++ E +K L LLT KP++YVAN+AE D+ADP ++ + E+ + + D
Sbjct: 175 GKAARTIDFDESEMPIVKGLFLLTTKPVLYVANIAEDDMADPEASKYFKEIKDYVAQEDP 234
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ + ISA+ E E+ EL +E+ E+L + G++E GL LI+++Y+LLGL+T+FT+G KE
Sbjct: 235 DAQVLGISAETEQEIAELEDDEKAEFLEAEGITEPGLNRLIQASYNLLGLQTFFTAGGKE 294
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT + GMTAPQ AGVIHSDFE+GFIRAETV++DD GS+ RE G LR EGK+Y
Sbjct: 295 TRAWTFKKGMTAPQTAGVIHSDFERGFIRAETVSFDDLDKYGSMQGVREAGRLRLEGKEY 354
Query: 410 IVQEGDVMLFRFNV 423
+VQ+GD++ FRFNV
Sbjct: 355 LVQDGDIIEFRFNV 368
>gi|150397466|ref|YP_001327933.1| GTP-dependent nucleic acid-binding protein EngD [Sinorhizobium
medicae WSM419]
gi|150028981|gb|ABR61098.1| GTP-binding protein YchF [Sinorhizobium medicae WSM419]
Length = 367
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/375 (53%), Positives = 269/375 (71%), Gaps = 14/375 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPR+ L+ ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRMRRLADIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+++ V+RCFED DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAVVHVLRCFEDEDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
P D D I EL+ +DL+ +E+R ++ +K GK K+S ++L E A+L+ +Q+
Sbjct: 121 HPVEDADTIETELMLADLESLERRADQTRKRATGKDKESMAQLPIME-ASLKLLQE---- 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R++ L+ + D ++ L LLT P++YV NVAESD A N H V +A +
Sbjct: 176 GKPVRTL-LSRLDADELRILQSLNLLTSHPVLYVCNVAESDAAT--GNEHTRAVEKMAQE 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISA +E+E+ +LP EE E+LA+LG+ E+GL LIR+ Y LL L TYFT G K
Sbjct: 233 QGAETVIISAAIESEVAQLPEEEAHEFLAALGLEEAGLDRLIRAGYKLLDLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWTI G APQAAGVIHSDFE+GFIRA T+AYDD++A G A+E G R EGK+
Sbjct: 293 ETRAWTIPRGTKAPQAAGVIHSDFERGFIRANTIAYDDYIAYGGENGAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFNV 423
Y+VQ+GDV+ FRFN
Sbjct: 353 YVVQDGDVIHFRFNT 367
>gi|449865077|ref|ZP_21778789.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U2B]
gi|449869066|ref|ZP_21779965.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 8ID3]
gi|449158633|gb|EMB62046.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 8ID3]
gi|449264482|gb|EMC61822.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans U2B]
Length = 371
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/377 (54%), Positives = 270/377 (71%), Gaps = 14/377 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKK----GKAKDSQSKLKDAEKAALEKIQ 226
VDP +D++ INLEL+ +DL+ I KR +++K K KDS AE L+KI+
Sbjct: 120 SDFVDPIADIETINLELILADLESINKRYARVEKIACTQKDKDSV-----AEFNILQKIK 174
Query: 227 QALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 286
L DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A
Sbjct: 175 PVLEDGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFA 234
Query: 287 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSG 346
+ + V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+G
Sbjct: 235 ATENAEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAG 294
Query: 347 EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEG 406
EKE +AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EG
Sbjct: 295 EKEVRAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEG 354
Query: 407 KDYIVQEGDVMLFRFNV 423
KDYIVQ+GD+M FRFNV
Sbjct: 355 KDYIVQDGDIMEFRFNV 371
>gi|336450043|ref|ZP_08620500.1| GTP-binding protein YchF [Idiomarina sp. A28L]
gi|336283200|gb|EGN76407.1| GTP-binding protein YchF [Idiomarina sp. A28L]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/370 (54%), Positives = 262/370 (70%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G AANFPFCTIEPN G+V+VPD RL LS + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAANFPFCTIEPNTGVVSVPDTRLTQLSDIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE D+I VVRCFED +IVHV GKV
Sbjct: 60 PQRVIPTTMEFVDIAGLVKGASKGEGLGNQFLANIRETDAIGHVVRCFEDENIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D IN EL +DLD +EK + +L KK K D Q+K E A LEK+ AL +G
Sbjct: 120 DPLEDIDTINTELALADLDSVEKAVYRLSKKAKGGDKQAK---DEVAVLEKLLPALAEGH 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
ARSV L+D ++ I+ LLT+KP +Y+ NVAE + NPH+ V LA + +
Sbjct: 177 MARSVELSDDDKKVIRSFNLLTLKPTMYICNVAEDGFEN---NPHLETVRKLAENENAIV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A +E+E+ EL +E+ E+L S+G+ E GL +IR+ Y LL L TYFT+G KE +AW
Sbjct: 234 VPVCAAIESEIAELEDDEKAEFLDSMGLEEPGLNRVIRAGYELLNLHTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ TAPQAAG IH+DFEKGFIRAE V +DDF+ A++ G R EGK+YIV++
Sbjct: 294 TVKKRSTAPQAAGRIHTDFEKGFIRAEIVGFDDFINNNGEQGAKDAGKWRLEGKEYIVKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVIHFRFNV 363
>gi|408374417|ref|ZP_11172104.1| GTP-binding protein YchF [Alcanivorax hongdengensis A-11-3]
gi|407765692|gb|EKF74142.1| GTP-binding protein YchF [Alcanivorax hongdengensis A-11-3]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 264/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G A NFPFCTIEPN G+V VPDPRL L+ +
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IDAENFPFCTIEPNTGVVPVPDPRLDKLAAIVS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D ++VHV GKV
Sbjct: 60 PERVMPATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDENVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
P D+ VIN EL +DLD +EK R K KG+ KD++ L L+K+ AL +
Sbjct: 120 SPLDDIAVINTELALADLDTVEKAHLRATKAAKGQDKDAKGLLP-----VLDKLLPALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PARSV L+ ER ++K L LLT+KP +Y+ANV E +N ++ V LA +
Sbjct: 175 GEPARSVELDSDERKTLKSLNLLTLKPTMYIANVDEDGFE---NNALLDAVRALAEKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I A++E+E+ EL EE+ ++LA LG+ E GL +IR+ + LLGL+TYFT+G+KE +
Sbjct: 232 SVVPICAKIESEIAELDDEEKADFLADLGMEEPGLNRVIRAGFDLLGLQTYFTAGKKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE AYDD++ + A++ G R EGKDYIV
Sbjct: 292 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVTAYDDYIEHNGESGAKDAGKWRLEGKDYIV 351
Query: 412 QEGDVMLFRFNV 423
+GDV+ FRFNV
Sbjct: 352 ADGDVVHFRFNV 363
>gi|407803841|ref|ZP_11150673.1| GTP-binding protein YchF [Alcanivorax sp. W11-5]
gi|407022251|gb|EKE34006.1| GTP-binding protein YchF [Alcanivorax sp. W11-5]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 262/369 (71%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +A NFPFCTIEPN G+V VPDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAQNFPFCTIEPNTGMVPVPDPRLEKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA++EFVDIAGLV GASQGEGLGNKFL++IRE D+I VVRCF+D++I+HV GKV
Sbjct: 60 PERILPATMEFVDIAGLVAGASQGEGLGNKFLANIRETDAIAHVVRCFDDDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+D IN EL +DLD +EK L+ KA Q K A L+K+ AL DGKP
Sbjct: 120 SPLDDIDTINTELALADLDSVEK--AHLRAAKAAKGQDKDAAALVTVLDKLLPALSDGKP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
ARSV L+D E ++ LLT+KP +Y+ANV E +N ++ V LA +G V
Sbjct: 178 ARSVALSDDELKRVRSYNLLTLKPTMYIANVTEDGFE---NNALLDAVRALAESEGAGVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E+E+ EL +E+ ++L+ +G+ E GL +IR+ Y+LLGL+TYFT+G KE +AWT
Sbjct: 235 AICAKIESEIAELDDDEKADFLSEMGMDEPGLNRVIRAGYNLLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G TAP++AGVIH+DFEKGFIRAE + YDD++ A++ G R EGKDY+V++G
Sbjct: 295 IPVGATAPKSAGVIHTDFEKGFIRAEVIGYDDYIQHNGEQGAKDAGKWRLEGKDYVVKDG 354
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 355 DVVHFRFNV 363
>gi|225077234|ref|ZP_03720433.1| hypothetical protein NEIFLAOT_02289 [Neisseria flavescens
NRL30031/H210]
gi|224951378|gb|EEG32587.1| hypothetical protein NEIFLAOT_02289 [Neisseria flavescens
NRL30031/H210]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ E +K L LLT KP +YV NV+E + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|421568334|ref|ZP_16014060.1| GTP-binding protein EngD [Neisseria meningitidis NM3001]
gi|402342062|gb|EJU77233.1| GTP-binding protein EngD [Neisseria meningitidis NM3001]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|313669061|ref|YP_004049345.1| hypothetical protein NLA_17840 [Neisseria lactamica 020-06]
gi|313006523|emb|CBN87987.1| conserved hypothetical protein [Neisseria lactamica 020-06]
Length = 363
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NVAE + NPH+ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLERLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ +AYDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|288817625|ref|YP_003431972.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
gi|384128386|ref|YP_005510999.1| GTP-binding protein YchF [Hydrogenobacter thermophilus TK-6]
gi|288787024|dbj|BAI68771.1| GTP-binding protein [Hydrogenobacter thermophilus TK-6]
gi|308751223|gb|ADO44706.1| GTP-binding protein YchF [Hydrogenobacter thermophilus TK-6]
Length = 365
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/370 (53%), Positives = 266/370 (71%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL GIVGLPNVGKSTLFNA+ E+ KAQAAN+PFCTIEPNVG+V VPD RL+ ++ L +
Sbjct: 1 MSLSVGIVGLPNVGKSTLFNAITESAKAQAANYPFCTIEPNVGVVEVPDRRLYEIARLER 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S+K P +EFVDIAGLV+ ASQGEGLGN+FL+HIREVD+I V+RCFED DIVH+ G V
Sbjct: 61 SKKITPTFIEFVDIAGLVRNASQGEGLGNQFLAHIREVDAIAMVLRCFEDPDIVHIEGSV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D +I+LEL+ DL+ + KR+EK++K A+ K K+ E L +++ L +P
Sbjct: 121 DPVRDAQIIDLELIAKDLETVSKRLEKVEK-MARIGDKKAKE-ELEKLSMLREILEGMEP 178
Query: 235 ARSVTL-NDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R L D + + L LLT+KP++YVANV E L N H+ +VM A + ++
Sbjct: 179 VRRRELAQDVREYAERVLFLLTIKPVLYVANVDEEGLK---GNEHLEKVMGYARNEKAPV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V I A++EAEL LP+++R E L + G+ E GL L+R Y LLGL T+FT+GEKE +AW
Sbjct: 236 VAICAKLEAELVSLPAQDRKELLLAYGLEEPGLNRLVREAYKLLGLITFFTAGEKEARAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI+ G APQAAG IHSDFE+GFI AE + Y+D++ GS++ A+E GL+R EG+DY +++
Sbjct: 296 TIKRGTKAPQAAGKIHSDFERGFIAAEVINYEDYIKVGSISKAKEMGLVRLEGRDYQIKD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVYFRFNV 365
>gi|27469293|ref|NP_765930.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis ATCC 12228]
gi|57865980|ref|YP_187641.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis RP62A]
gi|251811316|ref|ZP_04825789.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|282874669|ref|ZP_06283551.1| GTP-binding protein YchF [Staphylococcus epidermidis SK135]
gi|293367629|ref|ZP_06614281.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|417647607|ref|ZP_12297442.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU144]
gi|417657512|ref|ZP_12307173.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU028]
gi|417659148|ref|ZP_12308758.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU045]
gi|417909582|ref|ZP_12553318.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU037]
gi|417913028|ref|ZP_12556704.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU109]
gi|418412847|ref|ZP_12986098.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis BVS058A4]
gi|418607218|ref|ZP_13170468.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU057]
gi|418609075|ref|ZP_13172243.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU065]
gi|418612321|ref|ZP_13175365.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU117]
gi|418618443|ref|ZP_13181314.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU120]
gi|418622210|ref|ZP_13184965.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU123]
gi|418624234|ref|ZP_13186911.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU125]
gi|418626612|ref|ZP_13189210.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU126]
gi|418628121|ref|ZP_13190680.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU127]
gi|418634931|ref|ZP_13197322.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU129]
gi|418664470|ref|ZP_13225944.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU081]
gi|419769651|ref|ZP_14295744.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-250]
gi|419770823|ref|ZP_14296889.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-K]
gi|420163689|ref|ZP_14670431.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM095]
gi|420166112|ref|ZP_14672800.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM088]
gi|420168068|ref|ZP_14674719.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM087]
gi|420170912|ref|ZP_14677467.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM070]
gi|420172942|ref|ZP_14679439.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM067]
gi|420185070|ref|ZP_14691169.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM040]
gi|420188925|ref|ZP_14694924.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM039]
gi|420190602|ref|ZP_14696543.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM037]
gi|420196180|ref|ZP_14701957.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM021]
gi|420197552|ref|ZP_14703275.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM020]
gi|420200090|ref|ZP_14705752.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM031]
gi|420202929|ref|ZP_14708516.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM018]
gi|420205758|ref|ZP_14711281.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM015]
gi|420207828|ref|ZP_14713314.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM008]
gi|420209581|ref|ZP_14715017.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM003]
gi|420211528|ref|ZP_14716887.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM001]
gi|420214887|ref|ZP_14720162.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05005]
gi|420216018|ref|ZP_14721241.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05001]
gi|420222727|ref|ZP_14727642.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH08001]
gi|420224686|ref|ZP_14729525.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH06004]
gi|420227692|ref|ZP_14732456.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05003]
gi|420230745|ref|ZP_14735424.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04003]
gi|420235773|ref|ZP_14740309.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051475]
gi|421608583|ref|ZP_16049799.1| GTP-binding protein YchF [Staphylococcus epidermidis AU12-03]
gi|27316843|gb|AAO06018.1|AE016752_51 GTP-binding protein [Staphylococcus epidermidis ATCC 12228]
gi|57636638|gb|AAW53426.1| conserved hypothetical protein TIGR00092 [Staphylococcus
epidermidis RP62A]
gi|251805183|gb|EES57840.1| GTP-binding protein [Staphylococcus epidermidis BCM-HMP0060]
gi|281296593|gb|EFA89105.1| GTP-binding protein YchF [Staphylococcus epidermidis SK135]
gi|291318199|gb|EFE58593.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
epidermidis M23864:W2(grey)]
gi|329723884|gb|EGG60411.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU144]
gi|329734375|gb|EGG70689.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU028]
gi|329736076|gb|EGG72349.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU045]
gi|341652886|gb|EGS76661.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU037]
gi|341656862|gb|EGS80566.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU109]
gi|374405712|gb|EHQ76631.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU057]
gi|374408948|gb|EHQ79753.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU065]
gi|374410458|gb|EHQ81210.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU081]
gi|374815941|gb|EHR80162.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU120]
gi|374819623|gb|EHR83743.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU117]
gi|374827184|gb|EHR91049.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU123]
gi|374827958|gb|EHR91808.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU125]
gi|374831682|gb|EHR95419.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU126]
gi|374836473|gb|EHS00061.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU129]
gi|374838880|gb|EHS02414.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU127]
gi|383357959|gb|EID35421.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-250]
gi|383362650|gb|EID39997.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-K]
gi|394233978|gb|EJD79567.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM095]
gi|394234167|gb|EJD79752.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM088]
gi|394237462|gb|EJD82952.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM087]
gi|394239282|gb|EJD84727.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM070]
gi|394241208|gb|EJD86626.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM067]
gi|394253737|gb|EJD98732.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM039]
gi|394255452|gb|EJE00402.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM040]
gi|394258535|gb|EJE03415.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM037]
gi|394262055|gb|EJE06838.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM021]
gi|394265653|gb|EJE10304.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM020]
gi|394268948|gb|EJE13495.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM018]
gi|394269443|gb|EJE13977.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM015]
gi|394270139|gb|EJE14660.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM031]
gi|394275061|gb|EJE19453.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM008]
gi|394278478|gb|EJE22793.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM003]
gi|394280863|gb|EJE25134.1| GTP-binding protein YchF [Staphylococcus epidermidis NIHLM001]
gi|394283015|gb|EJE27195.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05005]
gi|394288681|gb|EJE32585.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH08001]
gi|394292717|gb|EJE36456.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05001]
gi|394294366|gb|EJE38049.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH06004]
gi|394296167|gb|EJE39797.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04003]
gi|394296543|gb|EJE40168.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH05003]
gi|394302442|gb|EJE45887.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051475]
gi|406655743|gb|EKC82166.1| GTP-binding protein YchF [Staphylococcus epidermidis AU12-03]
gi|410883908|gb|EKS31740.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
epidermidis BVS058A4]
Length = 365
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DGK
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM---ELRILTQIKEALEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 177 PVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDK-DNDKVKAIREYAANEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G R EGKDYI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAGRQRLEGKDYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|383939582|ref|ZP_09992737.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae SK674]
gi|418972986|ref|ZP_13521030.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383350723|gb|EID28585.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383712517|gb|EID69568.1| GTP-binding protein YchF [Streptococcus pseudopneumoniae SK674]
Length = 371
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSINYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + M APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRSMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|395005592|ref|ZP_10389467.1| GTP-binding protein YchF [Acidovorax sp. CF316]
gi|394316519|gb|EJE53243.1| GTP-binding protein YchF [Acidovorax sp. CF316]
Length = 364
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/371 (54%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLAQLASIIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +DL ++K + + K AK K DA K A L +IQ AL +G
Sbjct: 120 DPISDIEVIQTELCLADLGTVDKALNRYSKA-AKSGNDK--DAAKLVALLTRIQAALNEG 176
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 177 KPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNAP 233
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++EAE+ E+ E+R +LA +G SE GL LIR + LLGL+TYFT+G KE +A
Sbjct: 234 VVAICAKMEAEMAEMGDEDRDMFLAEMGQSEPGLARLIRGAFKLLGLQTYFTAGVKEVRA 293
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH DFE+GFIRA+T+A+DD++A A++ G +R+EGK+Y+V+
Sbjct: 294 WTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFDDYIALKGEQGAKDAGKMRAEGKEYVVK 353
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 354 DGDVLNFLFNV 364
>gi|347550107|ref|YP_004856435.1| putative GTP-binding protein [Listeria ivanovii subsp. ivanovii PAM
55]
gi|346983178|emb|CBW87230.1| Putative GTP-binding protein [Listeria ivanovii subsp. ivanovii PAM
55]
Length = 366
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEFNVLVKLRDAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ +D E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAIEFSDDEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAGENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|242372650|ref|ZP_04818224.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
gi|242349705|gb|EES41306.1| GTP-binding protein [Staphylococcus epidermidis M23864:W1]
Length = 365
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/370 (53%), Positives = 266/370 (71%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ ++KR+ K++K + KD +++ E L KI++AL DGK
Sbjct: 120 NPLDDIEVINMELVLADLESVDKRLPKIEKMARQKDKTAEM---ELRILTKIKEALEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A S
Sbjct: 177 PVRSIDFNEDDQKWVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAEKEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G R EGKDYI+++
Sbjct: 296 TFRQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEYGGENGAKEAGKQRLEGKDYIMKD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|15599868|ref|NP_253362.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa PAO1]
gi|107099660|ref|ZP_01363578.1| hypothetical protein PaerPA_01000678 [Pseudomonas aeruginosa PACS2]
gi|116052818|ref|YP_793135.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa UCBPP-PA14]
gi|218893770|ref|YP_002442639.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa LESB58]
gi|254238587|ref|ZP_04931910.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|355652199|ref|ZP_09056634.1| GTP-dependent nucleic acid-binding protein engD [Pseudomonas sp.
2_1_26]
gi|386060830|ref|YP_005977352.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa M18]
gi|392986342|ref|YP_006484929.1| GTP-binding protein YchF [Pseudomonas aeruginosa DK2]
gi|416855499|ref|ZP_11911530.1| GTP-binding protein YchF [Pseudomonas aeruginosa 138244]
gi|418588023|ref|ZP_13152040.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P1]
gi|418590134|ref|ZP_13154049.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P2]
gi|419754579|ref|ZP_14280939.1| GTP-binding protein YchF [Pseudomonas aeruginosa PADK2_CF510]
gi|420141861|ref|ZP_14649500.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CIG1]
gi|421156099|ref|ZP_15615553.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 14886]
gi|421163232|ref|ZP_15621959.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 25324]
gi|421170458|ref|ZP_15628410.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 700888]
gi|421176926|ref|ZP_15634584.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CI27]
gi|421182735|ref|ZP_15640207.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa E2]
gi|421519231|ref|ZP_15965903.1| GTP-binding protein YchF [Pseudomonas aeruginosa PAO579]
gi|424944550|ref|ZP_18360313.1| putative GTP-binding protein [Pseudomonas aeruginosa NCMG1179]
gi|451985061|ref|ZP_21933292.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
aeruginosa 18A]
gi|9950929|gb|AAG08060.1|AE004881_3 conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
gi|115588039|gb|ABJ14054.1| putative GTP-binding protein [Pseudomonas aeruginosa UCBPP-PA14]
gi|126170518|gb|EAZ56029.1| conserved hypothetical protein [Pseudomonas aeruginosa C3719]
gi|218773998|emb|CAW29813.1| putative GTP-binding protein [Pseudomonas aeruginosa LESB58]
gi|334842856|gb|EGM21455.1| GTP-binding protein YchF [Pseudomonas aeruginosa 138244]
gi|346060996|dbj|GAA20879.1| putative GTP-binding protein [Pseudomonas aeruginosa NCMG1179]
gi|347307136|gb|AEO77250.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa M18]
gi|354824407|gb|EHF08658.1| GTP-dependent nucleic acid-binding protein engD [Pseudomonas sp.
2_1_26]
gi|375041163|gb|EHS33876.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P1]
gi|375051085|gb|EHS43558.1| GTP-binding protein YchF [Pseudomonas aeruginosa MPAO1/P2]
gi|384398992|gb|EIE45395.1| GTP-binding protein YchF [Pseudomonas aeruginosa PADK2_CF510]
gi|392321847|gb|AFM67227.1| GTP-binding protein YchF [Pseudomonas aeruginosa DK2]
gi|403245418|gb|EJY59235.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CIG1]
gi|404346216|gb|EJZ72567.1| GTP-binding protein YchF [Pseudomonas aeruginosa PAO579]
gi|404519478|gb|EKA30230.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 14886]
gi|404523396|gb|EKA33820.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 700888]
gi|404529480|gb|EKA39516.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa ATCC 25324]
gi|404530296|gb|EKA40303.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa CI27]
gi|404541481|gb|EKA50838.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa E2]
gi|451757235|emb|CCQ85815.1| GTP-binding and nucleic acid-binding protein YchF [Pseudomonas
aeruginosa 18A]
gi|453042723|gb|EME90462.1| GTP-binding protein YchF [Pseudomonas aeruginosa PA21_ST175]
Length = 366
Score = 402 bits (1034), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PD RL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDARLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV+ V
Sbjct: 60 PERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GKP
Sbjct: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKEAL--AQKALLEKLIPHFTEGKP 177
Query: 235 ARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ L D E+ ++ LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 178 ARSLLKNLGDEEKRLVRSFHLLTSKPVMYIANVAEDGFEN---NPHLDVVKAIAEEEGAV 234
Query: 293 RVTISAQVEAELTELP-SEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + ++EAE+ EL EE+ +L SLG+ E GL +IR+ Y LL L+TYFT+G KE +
Sbjct: 235 VVPVCNKIEAEIAELEDGEEKDMFLESLGLEEPGLNRVIRAGYGLLNLQTYFTAGVKEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGKDYIV
Sbjct: 295 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQFKGEQGAKEAGKWRLEGKDYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 355 KDGDVMHFRFNV 366
>gi|351729050|ref|ZP_08946741.1| GTP-binding protein YchF [Acidovorax radicis N35]
Length = 364
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/371 (54%), Positives = 268/371 (72%), Gaps = 9/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVG+V VPDPRL L+ +
Sbjct: 1 MSLQCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGVVEVPDPRLQQLAEIIS 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ VPA VEFVDIAGLV GASQGEGLGN+FL+HIRE D+I+ VVRCFED++++HV G+V
Sbjct: 60 PERIVPAIVEFVDIAGLVAGASQGEGLGNQFLAHIRETDAIVNVVRCFEDDNVIHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +D+ +EK + + K AK KDA K A L +IQ AL +G
Sbjct: 120 DPISDIEVIQTELCLADMGTVEKALNRYTKA-AKSGND--KDAAKLVALLTRIQAALNEG 176
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPARSV + E+ +K LCL+T KP ++V NV+E + NP ++ + A+ +
Sbjct: 177 KPARSVEITKEEQPLLKSLCLITAKPAMFVGNVSEDGFEN---NPFLDRLKEYAASQNAP 233
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A++EAE+ E+ E+R +LA +G +E GL LIR + LLGL+TYFT+G KE +A
Sbjct: 234 VVAICAKMEAEMAEMSDEDRDMFLAEMGQTEPGLARLIRGAFKLLGLQTYFTAGVKEVRA 293
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH DFE+GFIRA+T+A++DF+A A++ G +R+EGK+Y+V+
Sbjct: 294 WTIHIGDTAPQAAGVIHGDFERGFIRAQTIAFEDFIALKGEQGAKDAGKMRAEGKEYVVK 353
Query: 413 EGDVMLFRFNV 423
+GDV+ F FNV
Sbjct: 354 DGDVLNFLFNV 364
>gi|337266798|ref|YP_004610853.1| GTP-binding protein YchF [Mesorhizobium opportunistum WSM2075]
gi|336027108|gb|AEH86759.1| GTP-binding protein YchF [Mesorhizobium opportunistum WSM2075]
Length = 367
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/375 (53%), Positives = 268/375 (71%), Gaps = 16/375 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLGKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ +DLD +E+R+ +++K K K++ + L E AALE +Q
Sbjct: 121 DPVADAETVETELMLADLDSLERRIVQIRKRASTKDKEATTVLPMME-AALELLQA---- 175
Query: 232 GKPAR----SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
GKP R ++ D ++ L LLT P++YV NVAE+D A N H V +A+
Sbjct: 176 GKPTRILLKGISAEDLR--ILQGLNLLTSHPVLYVCNVAEADAAT--GNEHTRAVEKMAT 231
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+G V ISA +EAE+ +L EE +E+L+SLG+ E GL +IR+ Y LL L TYFT G
Sbjct: 232 AQGAGTVVISAAIEAEVAQLSDEEEMEFLSSLGLDEPGLNKVIRAGYELLHLITYFTVGP 291
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KET+AWTI G APQAAGVIH+DFE+GFIRA+T+AY+DFVA G AA+E G R EGK
Sbjct: 292 KETRAWTIHKGDKAPQAAGVIHTDFERGFIRAQTIAYNDFVALGGEVAAKEAGKARDEGK 351
Query: 408 DYIVQEGDVMLFRFN 422
+Y+VQ+GD+MLF+FN
Sbjct: 352 EYVVQDGDIMLFKFN 366
>gi|419706270|ref|ZP_14233798.1| Putative GTP-binding protein [Streptococcus salivarius PS4]
gi|383283992|gb|EIC81928.1| Putative GTP-binding protein [Streptococcus salivarius PS4]
Length = 371
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+K++ L
Sbjct: 120 DAFVDPMADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSVAEFNVLQKLKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +++P +V ++ A+
Sbjct: 179 DGKSARTIDFTEEEQKIVKGLFLLTTKPVLYVANVDEDQVSNPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+VE E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARVEEEISELDDEDKEMFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD ++ GS A RE G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLISFGSEKAVREAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|304311479|ref|YP_003811077.1| GTPase, translation factor [gamma proteobacterium HdN1]
gi|301797212|emb|CBL45432.1| Predicted GTPase, probable translation factor [gamma
proteobacterium HdN1]
Length = 363
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 203/372 (54%), Positives = 266/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ + G A A NFPFCTIEPN GIV +PD RL L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALTKAGIA-AENFPFCTIEPNTGIVPIPDARLDALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF+D++++HV GK+
Sbjct: 60 PQKVLPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETDAIAHVVRCFDDDNVIHVAGKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ IN EL +D+D +EK R+ KL KG K+SQ++ K LEKI L +
Sbjct: 120 DPLADIETINTELALADMDSVEKSLHRLSKLAKGGDKESQAR-----KEVLEKILPLLNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PAR+ L+ E +K LLT+KP +Y+ANV E + NP ++ V A + S
Sbjct: 175 GRPARAALLSAEELKLVKSQNLLTIKPTMYIANVEEDGFEN---NPLLDRVREFAVNEGS 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V I A++EAE+ EL ++VE+LA LG+ E GL +IR+ YSLLGL+TYFT+G KE +
Sbjct: 232 IVVPICAKIEAEIAELDDADKVEFLADLGMEEPGLNRVIRAGYSLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+ G TAPQAA VIH+DFEKGFIRAE V Y+DFVA A++ G R EGK+YIV
Sbjct: 292 AWTVAVGATAPQAAAVIHTDFEKGFIRAEVVGYEDFVAFKGEQGAKDAGKWRLEGKEYIV 351
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 352 KDGDVMHFRFNV 363
>gi|335997107|ref|ZP_08563023.1| GTP-binding translation factor YchF [Lactobacillus ruminis SPM0211]
gi|335351375|gb|EGM52868.1| GTP-binding translation factor YchF [Lactobacillus ruminis SPM0211]
Length = 367
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 266/369 (72%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDARLARIDEIIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D +I HV+ KV
Sbjct: 60 AKKIVHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDENITHVSNKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D+D IN+ELV +DL+ + KR +++K A+ + K AE L KI+ L +GKP
Sbjct: 120 DPLDDIDTINMELVLADLESVNKRYARVEK-VARTQKDKDSIAEFNVLSKIKPVLEEGKP 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ +D E+ +K L LLT KP++YVAN+ E D++DP S + ++ N A S +
Sbjct: 179 VRSLEFDDDEQKIVKGLFLLTSKPVLYVANIGEDDMSDPDSCEYYQQIKNFAESEGSQAL 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A+ E E+ EL +E+ E+L + GV ESGL LI+++Y LLGL T+FT+G KET+AWT
Sbjct: 239 AVCARTEEEIAELDDDEKQEFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AGVIHSDFE+GFIRAETV+++D GS+ RE G LR EGKDY+VQ+G
Sbjct: 299 FKQGMKAPQVAGVIHSDFERGFIRAETVSFEDLDKYGSMQGVREAGRLRLEGKDYVVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|116874141|ref|YP_850922.1| GTP-dependent nucleic acid-binding protein EngD [Listeria
welshimeri serovar 6b str. SLCC5334]
gi|116743019|emb|CAK22143.1| GTP-binding protein YchF [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 366
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEYNVLVKLRDAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR++ N+ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAAENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E+++E+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|338980518|ref|ZP_08631788.1| Translation-associated GTPase [Acidiphilium sp. PM]
gi|338208551|gb|EGO96400.1| Translation-associated GTPase [Acidiphilium sp. PM]
Length = 364
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 264/370 (71%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPRL VL+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGRVAVPDPRLDVLAKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP S+EFVDIAGLV+GA++GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G +
Sbjct: 61 SVKTVPTSLEFVDIAGLVRGAAKGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGHI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D D + EL+ +DL+ ++KR+ L KK + D + + A L K+ L DG+
Sbjct: 121 DPLRDADTVETELMLADLESLQKRVPNLQKKARGNDRAAAAELALIEPLLKV---LEDGR 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ + E +++++L LLT KP++YV NV E+ A N V +A+ +
Sbjct: 178 PART-AIPAGEEEAVRRLQLLTAKPVLYVCNVEEASAAT--GNAQSARVAEMAAAHGAAH 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE+ +LP+ ER E+L LG+++SGL +IR+ Y LLGL TYFT G KET+AW
Sbjct: 235 VIVSAAIEAEVAQLPAGEREEFLEGLGLADSGLDRVIRAGYDLLGLITYFTCGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP AAGVIH DFE+GFI ET+AYDD+VA A ARE G LR EG++YIVQ+
Sbjct: 295 TITRGTAAPAAAGVIHGDFERGFIACETIAYDDYVACNGEAGAREAGKLRIEGRNYIVQD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVLLFRFNV 364
>gi|148260673|ref|YP_001234800.1| GTP-dependent nucleic acid-binding protein EngD [Acidiphilium
cryptum JF-5]
gi|326403867|ref|YP_004283949.1| GTP-binding protein [Acidiphilium multivorum AIU301]
gi|146402354|gb|ABQ30881.1| GTP-binding protein YchF [Acidiphilium cryptum JF-5]
gi|325050729|dbj|BAJ81067.1| GTP-binding protein [Acidiphilium multivorum AIU301]
Length = 364
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/370 (55%), Positives = 264/370 (71%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPNVG VAVPDPRL VL+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTATVAAQAANYPFCTIEPNVGRVAVPDPRLDVLAKIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K VP S+EFVDIAGLV+GA++GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G +
Sbjct: 61 SVKTVPTSLEFVDIAGLVRGAAKGEGLGNQFLANIREVDAIIHVLRCFEDDDITHVEGHI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D D + EL+ +DL+ ++KR+ L KK + D + + A L K+ L DG+
Sbjct: 121 DPLRDADTVETELMLADLESLQKRVPNLQKKARGNDRAAAAELALIEPLLKV---LEDGR 177
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR+ + E +++++L LLT KP++YV NV E+ A N V +A+ +
Sbjct: 178 PART-AIPAGEEEAVRRLQLLTAKPVLYVCNVEEASAAT--GNAQSARVAEMAAAQGAAH 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V +SA +EAE+ +LP+ ER E+L LG+++SGL +IR+ Y LLGL TYFT G KET+AW
Sbjct: 235 VIVSAAIEAEVAQLPAGEREEFLEGLGLADSGLDRVIRAGYDLLGLITYFTCGPKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G AP AAGVIH DFE+GFI ET+AYDD+VA A ARE G LR EG++YIVQ+
Sbjct: 295 TITRGTAAPAAAGVIHGDFERGFIACETIAYDDYVACNGEAGAREAGKLRIEGRNYIVQD 354
Query: 414 GDVMLFRFNV 423
GDV+LFRFNV
Sbjct: 355 GDVLLFRFNV 364
>gi|30249777|ref|NP_841847.1| GTP-dependent nucleic acid-binding protein EngD [Nitrosomonas
europaea ATCC 19718]
gi|30180814|emb|CAD85734.1| GTP1/OBG family:Conserved hypothetical protein 92 [Nitrosomonas
europaea ATCC 19718]
Length = 363
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 269/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPNVGIV VPD RL LS +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIEPNVGIVEVPDSRLTELSRIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D ++VHV GKV
Sbjct: 60 PQRVQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDPNVVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL ++K + + K ++S K+A K LEK+ L G
Sbjct: 120 DPLADIEVILTELALADLATVDKAIAR----DGKKAKSGDKEAIKLVTVLEKLIPHLNQG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
+PAR+ L++ E++ I+ LCLLT+KP +YV NV E + NP+++ + A+ +
Sbjct: 176 QPARTFPLSNEEKEIIRPLCLLTIKPAMYVGNVLEDGFEN---NPYLDRLREYAAKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A++EAEL +L ++ E+LA LG+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVALCAKIEAELADLDEADKKEFLADLGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFEKGFIRA+TV+Y DF+A G A A+EKG +R EGKDYIVQ
Sbjct: 293 WTIHKGNTAPQAAGVIHTDFEKGFIRAQTVSYADFIACGGEAGAKEKGKMRVEGKDYIVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|70727630|ref|YP_254546.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
haemolyticus JCSC1435]
gi|68448356|dbj|BAE05940.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
Length = 365
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+ L+ + K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLNKLTEMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L +I++AL +G
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPRIEKMARQKDKTAEM---EMRILSRIKEALENGD 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 177 PVRSLDFNEEDQRYVNQAQLLTSKKMLYIANVGEDEIGDE-DNDKVKAIREYAAKEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E+R +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDREMFLEDLGIEEPGLDVLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T R GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G A+E G R EGK+YI+Q+
Sbjct: 296 TFRQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEHGGEQGAKEAGKQRLEGKEYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|194398291|ref|YP_002036725.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pneumoniae G54]
gi|418122322|ref|ZP_12759262.1| GTPase family protein [Streptococcus pneumoniae GA44194]
gi|419492176|ref|ZP_14031907.1| GTPase family protein [Streptococcus pneumoniae GA47179]
gi|419533443|ref|ZP_14072955.1| GTPase family protein [Streptococcus pneumoniae GA47794]
gi|421239569|ref|ZP_15696130.1| putative GTPase [Streptococcus pneumoniae 2071247]
gi|421276097|ref|ZP_15726923.1| GTPase family protein [Streptococcus pneumoniae GA52612]
gi|194357958|gb|ACF56406.1| GTP-binding protein [Streptococcus pneumoniae G54]
gi|353790651|gb|EHD71033.1| GTPase family protein [Streptococcus pneumoniae GA44194]
gi|379591257|gb|EHZ56086.1| GTPase family protein [Streptococcus pneumoniae GA47179]
gi|379604346|gb|EHZ69107.1| GTPase family protein [Streptococcus pneumoniae GA47794]
gi|395599703|gb|EJG59868.1| putative GTPase [Streptococcus pneumoniae 2071247]
gi|395871851|gb|EJG82953.1| GTPase family protein [Streptococcus pneumoniae GA52612]
Length = 371
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+
Sbjct: 179 DGKSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + GM A QAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YI
Sbjct: 299 RAWTFKRGMKATQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYI 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|320547717|ref|ZP_08042002.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
equinus ATCC 9812]
gi|320447792|gb|EFW88550.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
equinus ATCC 9812]
Length = 371
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 269/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPLADIDTINLELILADLESVNKRYARVEK-VARTQKDKDSIAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +KQL LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTIEFTEDEQKIVKQLFLLTTKPVLYVANVDEDKVANPDDIEYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ +L LG+ ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEFFLEDLGLKESGVDRLTRAAYRLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGKDY+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAITMSYDDLIKYGSEKAVKEAGRLREEGKDYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|90418286|ref|ZP_01226198.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
gi|90337958|gb|EAS51609.1| GTP-binding protein [Aurantimonas manganoxydans SI85-9A1]
Length = 367
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/373 (54%), Positives = 271/373 (72%), Gaps = 12/373 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ + A AAN+PFCTIEPN G V VPDPRL ++G++K
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTKTAAAAAANYPFCTIEPNTGDVPVPDPRLKDIAGIAK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+D+VHV G+V
Sbjct: 61 SANILPTRITFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDVVHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ SDL+ +E+R+ +K GK K++ L E AAL K+Q +
Sbjct: 121 DPVADAETVETELMLSDLESLERRIVATRKKATGKDKEAIQALPVME-AALAKLQ----N 175
Query: 232 GKPARSVT--LNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289
G+P R + ++ ER +K L LLT KP++YV NVAE D A N H V +A
Sbjct: 176 GEPVRVLLAGMDAEERSELKTLNLLTSKPVLYVCNVAEDDAAS--GNAHSQAVAAMAQKQ 233
Query: 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE 349
+ V ISA +EAE+ +LP+EE +YL ++G++E GL LI++ YSLL L TYFT+G KE
Sbjct: 234 GAKSVVISAAIEAEIAQLPAEEVGDYLEAMGLTEPGLDRLIQAGYSLLDLITYFTAGPKE 293
Query: 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDY 409
T+AWT+R G APQAAGVIH+DFEKGFIRA+T+A+DDFV+ G AA+E G R EGK+Y
Sbjct: 294 TRAWTVRRGAKAPQAAGVIHTDFEKGFIRAQTIAFDDFVSLGGEVAAKEAGKARDEGKEY 353
Query: 410 IVQEGDVMLFRFN 422
+VQ+GD+++F+FN
Sbjct: 354 VVQDGDILMFKFN 366
>gi|253999720|ref|YP_003051783.1| GTP-dependent nucleic acid-binding protein EngD [Methylovorus
glucosetrophus SIP3-4]
gi|313201768|ref|YP_004040426.1| GTP-binding protein ychf [Methylovorus sp. MP688]
gi|253986399|gb|ACT51256.1| GTP-binding protein YchF [Methylovorus glucosetrophus SIP3-4]
gi|312441084|gb|ADQ85190.1| GTP-binding protein YchF [Methylovorus sp. MP688]
Length = 361
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/367 (54%), Positives = 266/367 (72%), Gaps = 6/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVGIV VPDPRL L + Q
Sbjct: 1 MKCGIVGLPNVGKSTLFNAITRAGIA-AENYPFCTIEPNVGIVEVPDPRLKPLIDIVNPQ 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA VEFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCF+D ++VHV GKVDP
Sbjct: 60 KVQPAIVEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFDDGNVVHVAGKVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ IN EL SD++ +EK +++ +GK S K A A LEKIQ+ L + KP R
Sbjct: 120 LDDIETINTELALSDMETVEKTLQR--EGKKAKSGDKEAIALCAVLEKIQKWLDESKPVR 177
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L+ + IK LCL+T+KP++Y+ANV ES + NP +++V+NL + V I
Sbjct: 178 TLGLDADQLQLIKPLCLITVKPVMYLANVDESGFEN---NPLLDKVVNLGKAENAPVVAI 234
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
A++E+E+ +L E++ +L LG+ E GL +IR+ YSLLGL+TYFT+G KE +AWT++
Sbjct: 235 CAKIESEIADLEDEDKAMFLTELGLEEPGLDRVIRAAYSLLGLQTYFTAGVKEVRAWTVK 294
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G TAPQAAGVIH+DFE+GFIRAE +AY++FV A+E G +R EGK+YI+Q+GDV
Sbjct: 295 RGSTAPQAAGVIHTDFERGFIRAEVIAYEEFVKNKGEQGAKEAGKMRLEGKEYIMQDGDV 354
Query: 417 MLFRFNV 423
+ FRFNV
Sbjct: 355 VHFRFNV 361
>gi|339484793|ref|YP_004696579.1| GTP-binding protein YchF [Nitrosomonas sp. Is79A3]
gi|338806938|gb|AEJ03180.1| GTP-binding protein YchF [Nitrosomonas sp. Is79A3]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/371 (55%), Positives = 267/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTI+PN+GIV VPDPRL LS + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTKAGIA-AENYPFCTIDPNIGIVEVPDPRLQKLSEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK A VEFVDIAGLV GAS+GEGLGNKFL++IRE D I+ +VRCF D++++HV GKV
Sbjct: 60 PQKIQSAIVEFVDIAGLVAGASKGEGLGNKFLANIRETDGIVNMVRCFADDNVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP SD++VI EL +DL +EK +++ ++K ++S KDA K A LE +Q L G
Sbjct: 120 DPISDIEVIQTELALADLATVEKAIQR----ESKVAKSGNKDAIKLCALLETVQAHLDQG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KPAR++ L+ ++ ++ LCLLT KP IYVANV + + NP + V A+ +
Sbjct: 176 KPARTLDLDKEQKHLLQPLCLLTAKPAIYVANVDDHGFQN---NPLLTRVEEYAAQEGAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +EAE+ ELP E++ +LA L + E GL L+R+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAICAALEAEIAELPDEDKKIFLADLNLEEPGLNRLVRAGYELLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFEKGFIRAE ++YDDF+A A+E G +R EGK+YIV+
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFEKGFIRAEVISYDDFIAYNGEQGAKEAGKMRLEGKEYIVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM FRFNV
Sbjct: 353 DGDVMHFRFNV 363
>gi|116626977|ref|YP_819596.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
thermophilus LMD-9]
gi|386085709|ref|YP_006001583.1| GTPase [Streptococcus thermophilus ND03]
gi|116100254|gb|ABJ65400.1| Predicted GTPase, probable translation factor [Streptococcus
thermophilus LMD-9]
gi|312277422|gb|ADQ62079.1| Predicted GTPase, probable translation factor [Streptococcus
thermophilus ND03]
Length = 371
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELFT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DDFVDPMADIDTINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKTVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTIDFTEEEQKIVKGLFLLTTKPVLYVANVDEDQVANPDDIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+VE E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARVEEEISELDDEDKEMFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|94265600|ref|ZP_01289344.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
gi|93453879|gb|EAT04237.1| GTP-binding protein, HSR1-related:conserved hypothetical protein
[delta proteobacterium MLMS-1]
Length = 364
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 274/370 (74%), Gaps = 7/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKST+FNA+ G ++AN+PFCTIEPNVG+V VPD RL L+ +++
Sbjct: 1 MGFRCGIVGLPNVGKSTIFNALTAAG-IESANYPFCTIEPNVGMVPVPDHRLDALAAMAR 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ V A +EFVDIAGLV GAS+GEGLGN+FL HIR+VD+I VVRCF D++IVHV+ +
Sbjct: 60 TRNKVNAKMEFVDIAGLVSGASRGEGLGNQFLGHIRQVDAIAHVVRCFTDDNIVHVDSGI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D +VIN EL+ +DL+ I KR++K + K+ D SK + A LE +++ L G+
Sbjct: 120 DPLRDREVINTELILADLETIRKRIQKTANQAKSGDKTSK---QQLAILEAMEKHLDQGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PAR++ L+D R+ ++++ LL+ KP++YVANV ES++ G NP V ++ A+ Q+
Sbjct: 177 PARTLELDDGGRELLREIFLLSAKPVLYVANVLESEIN--GGNPWVAKLQEAAAAEQASV 234
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V IS +E EL+ L ++ER +LA +G++E GL LIR+ Y LLGL T+FT GEKET+AW
Sbjct: 235 VVISGAIEEELSNLETDERQAFLADMGLTEPGLNRLIRTGYQLLGLVTFFTVGEKETRAW 294
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI AG APQAAGVIHSDFE+GFIRAE ++ DD +A GS A A+EKGLLR EGK+Y+V++
Sbjct: 295 TIAAGSKAPQAAGVIHSDFERGFIRAEVISCDDLLACGSEAKAKEKGLLRLEGKEYVVKD 354
Query: 414 GDVMLFRFNV 423
GD + FRFNV
Sbjct: 355 GDCINFRFNV 364
>gi|410471587|ref|YP_006894868.1| hypothetical protein BN117_0851 [Bordetella parapertussis Bpp5]
gi|408441697|emb|CCJ48184.1| conserved hypothetical protein [Bordetella parapertussis Bpp5]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/371 (53%), Positives = 264/371 (71%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L+ GIVGLPNVGKSTLFNA+ G A A N+PFCTIEPNVG+V VPDPRL L+ + K
Sbjct: 1 MALQCGIVGLPNVGKSTLFNALTRAGIA-AENYPFCTIEPNVGVVEVPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +PA+VEFVDIAGLV GASQGEGLGN+FLSHIRE ++I+ VVRCFED ++VHV G+V
Sbjct: 60 PERILPATVEFVDIAGLVAGASQGEGLGNQFLSHIRETNAIVNVVRCFEDPNVVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEK--AALEKIQQALMDG 232
DP +D++VI EL +DL EK + + +K ++S KDA++ LEK L
Sbjct: 120 DPIADIEVIETELALADLQTAEKALHR----HSKTARSGDKDAQRLVTVLEKCIAQLNQA 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP R + L+D E+ I QLC +T KP +YV NV++ D NP + + A +
Sbjct: 176 KPVRGLDLSDEEQALIAQLCFITAKPAMYVGNVSDDGFTD---NPLLERLAEFAKSRNAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V I A +E+E+ +LP E+R +L+ +G+ E GL LIR ++LLGL+TYFT+G KE +A
Sbjct: 233 MVAICAAIESEIVDLPEEDRQTFLSDMGMEEPGLNRLIRGAFTLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+T+AY+DF+A A+E G +R+EGK+Y+V+
Sbjct: 293 WTIPIGATAPQAAGVIHTDFERGFIRAQTIAYEDFIACKGEQGAKEAGKMRAEGKEYVVK 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMNFLFNV 363
>gi|363894173|ref|ZP_09321263.1| GTP-dependent nucleic acid-binding protein engD [Eubacteriaceae
bacterium ACC19a]
gi|361962916|gb|EHL16014.1| GTP-dependent nucleic acid-binding protein engD [Eubacteriaceae
bacterium ACC19a]
Length = 365
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD R+ LS ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDYRVDKLSEINHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V S+EFVDIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVR F+D+++VHV+G V+P
Sbjct: 60 KTVHTSIEFVDIAGLVKGASKGEGLGNKFLSHIREVEAIVHVVRAFDDSNVVHVDGNVNP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K +K D + +E + KI L DGK AR
Sbjct: 120 LRDIETINLELIFSDIEILQRRLAKAQKALKGDKKIA---SEVELINKIMAVLEDGKSAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
++ ++ E + +K LLT K IIYVANV+E +++ G N +V ++ A + S V
Sbjct: 177 TIDFSEKELEIMKDFNLLTNKSIIYVANVSEDEVSLNGEGNEYVAKIREFAKEENSEVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++E EL++L +E+ E+L +G+ SGL L++++YSLLGL ++ T+GE ET+AWTI
Sbjct: 237 ISAKIEEELSQLSEDEKKEFLNDMGMDSSGLEKLVKASYSLLGLISFLTTGEDETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLLRSEGKDYIVQEG 414
G AP+AAG IHSD ++GFIRAET+ YD+ V G++A AR+KGL+RSEGK+YIV++G
Sbjct: 297 VNGTKAPEAAGKIHSDIQRGFIRAETIGYDELVEIGGNMAVARDKGLIRSEGKEYIVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|261363931|ref|ZP_05976814.1| GTP-binding protein YchF [Neisseria mucosa ATCC 25996]
gi|288567945|gb|EFC89505.1| GTP-binding protein YchF [Neisseria mucosa ATCC 25996]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 208/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 175 GKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|94987635|ref|YP_595736.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pyogenes MGAS9429]
gi|94991501|ref|YP_599600.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pyogenes MGAS2096]
gi|417855874|ref|ZP_12500933.1| GTP-binding protein YchF [Streptococcus pyogenes HKU QMH11M0907901]
gi|94541143|gb|ABF31192.1| GTP-binding protein, probable translation factor [Streptococcus
pyogenes MGAS9429]
gi|94545009|gb|ABF35056.1| GTP-binding protein, probable translation factor [Streptococcus
pyogenes MGAS2096]
gi|387932829|gb|EIK40942.1| GTP-binding protein YchF [Streptococcus pyogenes HKU QMH11M0907901]
Length = 371
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/373 (53%), Positives = 272/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +A+P +V ++ + A+
Sbjct: 179 DGKSARTIEFTEDEAKVVKGLFLLTTKPVLYVANVDEGKVANPDGIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD +A GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMAYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|357026105|ref|ZP_09088213.1| GTP-binding protein YchF [Mesorhizobium amorphae CCNWGS0123]
gi|355542069|gb|EHH11237.1| GTP-binding protein YchF [Mesorhizobium amorphae CCNWGS0123]
Length = 367
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/374 (53%), Positives = 267/374 (71%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAAN+PFCTIEPN G VAVPDPRL ++ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTRTAAAQAANYPFCTIEPNTGEVAVPDPRLQKIAAIGK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ +DL+ +E+R+ + +K GK K++ + L E AALE +Q
Sbjct: 121 DPVADAETVETELMLADLESLERRIAQFRKRASGKDKEAMTVLPTME-AALELLQA---- 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R + L + ++ L LLT P++YV NVAE+D A N H + V +A+
Sbjct: 176 GKPTR-ILLKGISPEDLRILQGLNLLTSHPVLYVCNVAEADAAT--GNEHTSVVEKMAAA 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISA +EAE+ +L EE +E+LASLG+ E GL +IR+ Y LL L TYFT G K
Sbjct: 233 QGASTVVISAAIEAEVAQLSDEEEMEFLASLGLDEPGLNKVIRAGYELLQLITYFTVGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
E +AWT+ G APQAAGVIH+DFE+GFIRA+T+AY+DFVA G AA+E G R EGK+
Sbjct: 293 EARAWTVHKGARAPQAAGVIHTDFERGFIRAQTIAYNDFVALGGEVAAKEAGKARDEGKE 352
Query: 409 YIVQEGDVMLFRFN 422
Y+VQ+GD+MLF+FN
Sbjct: 353 YVVQDGDIMLFKFN 366
>gi|255066570|ref|ZP_05318425.1| GTP-binding protein YchF [Neisseria sicca ATCC 29256]
gi|255049154|gb|EET44618.1| GTP-binding protein YchF [Neisseria sicca ATCC 29256]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL IEK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASIEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 175 GKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|350564649|ref|ZP_08933466.1| GTP-binding protein YchF [Thioalkalimicrobium aerophilum AL3]
gi|349777668|gb|EGZ32031.1| GTP-binding protein YchF [Thioalkalimicrobium aerophilum AL3]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 267/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M ++ GIVGLPNVGKSTLFNA+ N AAN+PFCTIEPNVGIV VPDPR L+ + K
Sbjct: 1 MGIKCGIVGLPNVGKSTLFNALT-NAGIDAANYPFCTIEPNVGIVPVPDPRQDKLAEMVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ + A++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I QVVRCFE++DIVHV GKV
Sbjct: 60 PERVMAATMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAQVVRCFENDDIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP SD+++IN ELV +D++ I+K + LK + + +K A A LEK+ + +G
Sbjct: 120 DPLSDIEIINTELVLADMESIDKAI--LKVQRVAKTGNKEAIARLATLEKVAAGIAEGTL 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ L+ E+ + L LLT+KP++Y+ANV E + NP+++ V A + + V
Sbjct: 178 VRNLDLSKDEQAELYDLHLLTIKPMMYIANVNEDGFEN---NPYLDAVTAFAQEQGAAVV 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A +E+E+ EL E+++++L +G+ E GL +IR+ YSLLGL+TYFT+G KE +AWT
Sbjct: 235 PVCAAIESEIAELDDEDKLDFLQGMGLDEPGLNRVIRAGYSLLGLQTYFTAGVKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
++ G TAPQAAGVIH+DFEKGFIRAE AYDD+V A+E G LR EGKDYIVQ+G
Sbjct: 295 VKVGATAPQAAGVIHTDFEKGFIRAEVTAYDDYVKYNGEQGAKEAGKLRLEGKDYIVQDG 354
Query: 415 DVMLFRFNV 423
DVM FRFNV
Sbjct: 355 DVMHFRFNV 363
>gi|74316408|ref|YP_314148.1| GTP-dependent nucleic acid-binding protein EngD [Thiobacillus
denitrificans ATCC 25259]
gi|74055903|gb|AAZ96343.1| Conserved hypothetical protein [Thiobacillus denitrificans ATCC
25259]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 263/372 (70%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ + G A A N+PFCTIEPN G+V VPDPRL L+ + K
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQAGIA-AENYPFCTIEPNTGVVEVPDPRLDELAKVVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ VPA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I VVRCF D +++HV GKV
Sbjct: 60 PQRVVPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAICHVVRCFHDENVIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP SDV+ I EL +DL EK R EK + K++Q + AAL+ + AL +
Sbjct: 120 DPLSDVETIATELALADLASAEKALARYEKPARAGDKEAQHMV-----AALKPVVAALNE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+PAR+ L+ IK LCL+T+KP +YVANV E D NP ++ + A +
Sbjct: 175 GRPARAAGLDAEGLARIKPLCLMTVKPTLYVANVDEDGFHD---NPLLDALTAFAEKEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +EAEL EL EERVEYL LG E GL LIR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 PVVPVCAALEAELQELSPEERVEYLNELGWDEPGLNRLIRAAYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+T+++DDF+A A+E G +R+EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQTISFDDFIACQGEQGAKEAGKMRAEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
++GDV+ F FNV
Sbjct: 352 KDGDVLNFLFNV 363
>gi|406026457|ref|YP_006725289.1| GTP-binding translation factor YchF [Lactobacillus buchneri CD034]
gi|405124946|gb|AFR99706.1| GTP-binding translation factor YchF [Lactobacillus buchneri CD034]
Length = 366
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/370 (53%), Positives = 270/370 (72%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MSLTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDKRLDRIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K VP + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVPTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNITTVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+D INLEL +DLD + KR+ K+++ K D ++K AE A LEKI+ L DG
Sbjct: 120 DPLDDIDTINLELGIADLDSVNKRLGKVQRAAKGNDKEAK---AELAVLEKIKPVLEDGG 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
RS+ ++ E+ +K L LLT KP++YVAN+AE D+ADP ++ + E+ A+ +
Sbjct: 177 SVRSIDFDEDEQKIVKGLFLLTSKPVLYVANIAEDDMADPENSKYFPEIKEFAAKEGAEA 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ++A E E+ +L +E+ E+L + GV E GL LIR++Y LLGL+T+FT+G KET+AW
Sbjct: 237 IAVAAGPEEEIAQLDDDEKAEFLEAEGVKEPGLNRLIRASYKLLGLQTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + G APQAAG+IHSDFE+GFIRAE +A+DD + AA +E G LR EGKDY++Q+
Sbjct: 297 TFKKGTKAPQAAGIIHSDFERGFIRAEVMAFDDLDKLETPAAVKEAGKLRLEGKDYVMQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIVEFRFNV 366
>gi|342216565|ref|ZP_08709212.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 375 str.
F0436]
gi|341587455|gb|EGS30855.1| GTP-binding protein YchF [Peptoniphilus sp. oral taxon 375 str.
F0436]
Length = 362
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/367 (52%), Positives = 272/367 (74%), Gaps = 5/367 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A+AAN+PF TIEPNVG+V VPD RL +LS +S+S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIEPNVGVVNVPDERLKILSKISQSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ VP S++F DIAGLV+GAS GEGLGN+FL+HIREV++I+ VVRCF+++ I+HV+G +DP
Sbjct: 60 REVPVSIKFFDIAGLVRGASHGEGLGNQFLNHIREVEAIVHVVRCFDNDQIIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+ SDLDQ+EKR KL K D K E +E++ AL +P R
Sbjct: 120 IRDIETINLELMLSDLDQLEKRQGKLVKQVKGDKALK---PELDLVERLIGALEKSEPLR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296
++ L++ E I LLT KP+IYVANV+E +L+ S+P++++V A L V I
Sbjct: 177 TMELSEEEEKMISSFNLLTFKPVIYVANVSEDELSQ-DSHPYIDQVKEYAEKLHDEVVPI 235
Query: 297 SAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIR 356
SA++EAE+ L +E+ +L LG+ +SGL LI+++Y LLGL ++ T+G E++AWTI
Sbjct: 236 SAEIEAEIATLDDDEKQLFLEELGIEQSGLDRLIKASYKLLGLISFLTTGPMESRAWTIT 295
Query: 357 AGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDV 416
G APQA G IHSD E+GFI+A+ +++DD V AGS+A ARE+GL+R EGKDY++++GDV
Sbjct: 296 DGTKAPQAGGKIHSDIERGFIKADVISFDDLVKAGSMAKAREEGLIRQEGKDYVMEDGDV 355
Query: 417 MLFRFNV 423
+LF+FNV
Sbjct: 356 VLFKFNV 362
>gi|146306086|ref|YP_001186551.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
mendocina ymp]
gi|421504246|ref|ZP_15951189.1| GTP-binding protein YchF [Pseudomonas mendocina DLHK]
gi|145574287|gb|ABP83819.1| GTP-binding protein YchF [Pseudomonas mendocina ymp]
gi|400345016|gb|EJO93383.1| GTP-binding protein YchF [Pseudomonas mendocina DLHK]
Length = 366
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 269/373 (72%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED +++HV V
Sbjct: 60 PEKVIPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVANSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DPK D+++I+LEL+ +DLD EK+++++ + K D +S A+KA LEK+ L +GK
Sbjct: 120 DPKRDIEIIDLELIMADLDSCEKQLQRVARTAKGGDKESV---AQKALLEKLIPHLTEGK 176
Query: 234 PARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
PARS+ L D E+ K LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 177 PARSLLKDLGDDEKRLAKTFHLLTTKPVMYIANVAEDGFEN---NPHLDVVNAIAKEEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVE-YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
V + ++EAE+ EL E ++ +L ++G+ E GL +IR+ YSLL L+TYFT+G KE
Sbjct: 234 IVVPVCNKIEAEIAELDDLEEMQMFLETMGMEEPGLNRVIRAGYSLLNLQTYFTAGVKEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT+R G TAPQAA VIH+DFEKGFIRAE VAYDDF+A A+E G R EGKDYI
Sbjct: 294 RAWTVRVGATAPQAAAVIHTDFEKGFIRAEVVAYDDFIAYKGEGGAKEAGKWRLEGKDYI 353
Query: 411 VQEGDVMLFRFNV 423
V++GDVM FRFNV
Sbjct: 354 VKDGDVMHFRFNV 366
>gi|366089672|ref|ZP_09456038.1| GTP-binding protein YchF [Lactobacillus acidipiscis KCTC 13900]
Length = 367
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 269/369 (72%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLQRIDEIEP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D+++ HV+ K+
Sbjct: 60 AKKIIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDNVTHVSNKI 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
P D+D INLELV +DL+ + KR K++K A+ ++ K AE LEKI+ L GK
Sbjct: 120 APLDDIDTINLELVLADLEAVNKRYAKVEK-VARTTKDKEAVAEFKVLEKIKPVLEAGKS 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
R++ N+ E+ +K L LLT KP++YVAN+AE D+ADP ++ + EV + A+ S +
Sbjct: 179 VRTLEFNEDEQKIVKGLFLLTAKPVLYVANIAEEDMADPEASKYFKEVQDFAASEGSEAL 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ AQ E E+ EL ++R ++L + GV ESGL LI+++Y LLGL T+FT+G KET+AWT
Sbjct: 239 AVCAQTEEEIAELDDDDRQDFLEAEGVEESGLDRLIKASYKLLGLATFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GM APQ AGVIHSDFE+GFIRAETV++DD GS+ A +E G LR EGK+Y VQ+G
Sbjct: 299 FKKGMKAPQVAGVIHSDFERGFIRAETVSFDDLDKYGSMQAVKEAGRLRLEGKEYEVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|167749979|ref|ZP_02422106.1| hypothetical protein EUBSIR_00947 [Eubacterium siraeum DSM 15702]
gi|167657000|gb|EDS01130.1| GTP-binding protein YchF [Eubacterium siraeum DSM 15702]
Length = 364
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/368 (54%), Positives = 272/368 (73%), Gaps = 5/368 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ N A++AN+PFCTIEPNVGIV+VPD RL L+ + +
Sbjct: 1 MKLGMVGLPNVGKSTLFNALT-NAGAESANYPFCTIEPNVGIVSVPDERLDALAKMYNPE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA++EFVDIAGLVKGAS+GEGLGNKFLS+IREVD+I+ VVRCFED++I+HV+GK+
Sbjct: 60 KFTPATLEFVDIAGLVKGASKGEGLGNKFLSNIREVDAIVHVVRCFEDDNIIHVDGKIGA 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ I++R+++ KK D K +E LEK+ L +GK AR
Sbjct: 120 ARDIETINLELIFSDIEIIQRRIDREKKQMKGD---KSLASEVEFLEKLLAHLEEGKSAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDL-ADPGSNPHVNEVMNLASDLQSGRVT 295
S + E + +K LL+ KP+IY AN++ESD D N V +A S +
Sbjct: 177 SYPYTESELEMVKASPLLSNKPVIYAANLSESDFTGDIEKNEQYRAVCEIAKAENSVVLP 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
I AQ+EAE+ ++ +E++ +L+ LG+ ESGL +I+ YSLLGL +Y T+G +E +AWTI
Sbjct: 237 ICAQIEAEIADMSAEDKEMFLSELGLKESGLNRIIKQGYSLLGLISYLTAGVQEVRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGD 415
G APQAAG IH+DFEKGFIRAE V++DD +A GS+AAA+EKGL+R EGKDY++++GD
Sbjct: 297 TNGTKAPQAAGKIHTDFEKGFIRAEIVSFDDLMACGSMAAAKEKGLIRLEGKDYVMRDGD 356
Query: 416 VMLFRFNV 423
V+LFRFNV
Sbjct: 357 VVLFRFNV 364
>gi|71902671|ref|YP_279474.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pyogenes MGAS6180]
gi|71801766|gb|AAX71119.1| GTP-binding protein [Streptococcus pyogenes MGAS6180]
Length = 371
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +A+P +V ++ + A+
Sbjct: 179 DGKSARTIEFTEDEAKVVKGLFLLTTKPVLYVANVDEDKVANPDGIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|294668557|ref|ZP_06733654.1| GTP-binding protein YchF [Neisseria elongata subsp. glycolytica
ATCC 29315]
gi|291309520|gb|EFE50763.1| GTP-binding protein YchF [Neisseria elongata subsp. glycolytica
ATCC 29315]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/371 (55%), Positives = 268/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAA--LEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K +K+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAIAR----EEKRARSGDKDAQKLVELCKKLLPHLDEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 176 KPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ +AY+DFVA G A A+E G +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVIAYEDFVALGGEAKAKEAGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|389606536|emb|CCA45449.1| GTP-dependent nucleic acid-binding protein engD [Neisseria
meningitidis alpha522]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/372 (55%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV G+V
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q KL D K K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQ-KLVDLCK----KLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ ER +K L LLT KP +YV NV+E + NPH++ + LA+ +
Sbjct: 175 GKPVRSFGLDAEERAMLKPLFLLTAKPAMYVGNVSEDGFEN---NPHLDRLKELAAKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDGEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|359786965|ref|ZP_09290038.1| GTP-binding protein YchF [Halomonas sp. GFAJ-1]
gi|359295731|gb|EHK59993.1| GTP-binding protein YchF [Halomonas sp. GFAJ-1]
Length = 363
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/372 (52%), Positives = 268/372 (72%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSG-IDAENFPFCTIEPNVGIVPMPDPRLDKLAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE +I VVRCF++++++HV +V
Sbjct: 60 PQKILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETQAIAHVVRCFDNDNVIHVANQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL---KKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP++D++ IN+EL +DLD +EK ++L KG KD+ A KA L+KIQ L +
Sbjct: 120 DPRADIETINIELALADLDTVEKASQRLLRSVKGGDKDAT-----ATKAILDKIQPHLAE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
G+P RS L D E+ +K LT+KP +Y+ANV E D NP+++ V +A++ +
Sbjct: 175 GQPLRSFELTDDEKHQVKSFGFLTLKPTMYIANVNEDGFED---NPYLDIVKEIAAEEGA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + Q+EAE+ EL EER +LA +G+ E GL +IR+ Y+LLGL+TYFT+G KE +
Sbjct: 232 VVVPVCNQLEAEIAELEDEERSMFLAEMGMEEPGLDRVIRAGYALLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT++ G +AP+AAGVIH+DF+KGFIRAE +AYDD+V G A++ G R EGK+YIV
Sbjct: 292 AWTVKQGASAPEAAGVIHTDFQKGFIRAEVIAYDDYVTLGGEQGAKDAGKWRLEGKEYIV 351
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 352 KDGDVIHFRFNV 363
>gi|332188703|ref|ZP_08390417.1| GTP-binding and nucleic acid-binding protein YchF [Sphingomonas sp.
S17]
gi|332011267|gb|EGI53358.1| GTP-binding and nucleic acid-binding protein YchF [Sphingomonas sp.
S17]
Length = 366
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/371 (53%), Positives = 265/371 (71%), Gaps = 7/371 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M R GIVGLPNVGKSTLFNA+ E AQAAN+PFCTIEPNVG VAVPDPRL+ L+ ++
Sbjct: 1 MGFRCGIVGLPNVGKSTLFNALTETAAAQAANYPFCTIEPNVGNVAVPDPRLYQLAEVAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S K + + FVDIAGLV+GAS+GEGLGN+FL +IREVD+I+ V+RCFED D+ HV GKV
Sbjct: 61 SAKIIETQLAFVDIAGLVRGASKGEGLGNQFLGNIREVDAIVHVLRCFEDGDVTHVEGKV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP +D + + EL+ SDL+ +EKR+ +KKG+ D ++K+ + L + + L +GK
Sbjct: 121 DPIADAETVETELMLSDLESLEKRVPAFIKKGQQGDKEAKIA---ASVLGQTLELLREGK 177
Query: 234 PARSVTLNDFERDSI-KQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
PAR D E + Q LLT KP++YV NV E++ A+ N H V A+ +
Sbjct: 178 PARLTQPKDEEEARVFAQAQLLTAKPVLYVCNVEEANAAN--GNAHSQRVFEKAAAEGAQ 235
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V +SA +EAE+ +P+E+R E+L+ LG+SE+GL +IR+ Y+LL L T+FT G KE +A
Sbjct: 236 AVVVSAAIEAEIATMPAEDRGEFLSELGLSETGLARVIRAGYALLDLLTFFTVGPKEARA 295
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT+ G AP AAG IHSDFE+GFIRAET+A+ D+VA A AR+ G LR+EGK+Y+VQ
Sbjct: 296 WTVHRGAKAPNAAGEIHSDFERGFIRAETIAFADYVAFKGEAGARDAGKLRAEGKEYVVQ 355
Query: 413 EGDVMLFRFNV 423
+GDVMLFRFNV
Sbjct: 356 DGDVMLFRFNV 366
>gi|429335292|ref|ZP_19215929.1| GTP-binding protein YchF [Pseudomonas putida CSV86]
gi|428760094|gb|EKX82371.1| GTP-binding protein YchF [Pseudomonas putida CSV86]
Length = 366
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 268/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PD RL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDARLDALAAIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED +++HV+ V
Sbjct: 60 PQRILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GKP
Sbjct: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKEAL--AQKAILEKLIPHFTEGKP 177
Query: 235 ARSVTLN--DFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ N D E+ I+ LLT KP++Y+ANVAE +NPH++ V +A + +
Sbjct: 178 ARSLMKNMADDEKAVIRGFHLLTSKPVMYIANVAEDGF---DNNPHLDVVRAIAEEEGAV 234
Query: 293 RVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + ++EAE+ EL EE+ +L +LG+ E GL +IR+ Y+LL L+TYFT+G +E +
Sbjct: 235 VVPVCNKIEAEIAELDEGEEKDMFLEALGLEEPGLNRVIRAGYALLNLQTYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGKDYIV
Sbjct: 295 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQYKGEGGAKEAGKWRLEGKDYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 355 KDGDVMHFRFNV 366
>gi|330502025|ref|YP_004378894.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
mendocina NK-01]
gi|328916311|gb|AEB57142.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
mendocina NK-01]
Length = 366
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/373 (54%), Positives = 269/373 (72%), Gaps = 11/373 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDPRLDALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED +++HV V
Sbjct: 60 PEKVIPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDENVIHVANSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DPK D+++I+LEL+ +DLD EK+++++ + K D +S A+KA LEK+ L +GK
Sbjct: 120 DPKRDIEIIDLELIMADLDSCEKQLQRVARTAKGGDKESV---AQKALLEKLIPHLTEGK 176
Query: 234 PARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
PARS+ L D E+ K LLT KP++Y+ANVAE + NPH++ V +A +
Sbjct: 177 PARSLLKDLGDDEKRLAKTFHLLTTKPVMYIANVAEDGFEN---NPHLDVVQAIADAEGA 233
Query: 292 GRVTISAQVEAELTELPSEERVE-YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
V + ++EAE+ EL E ++ +L ++G+ E GL +IR+ YSLL L+TYFT+G KE
Sbjct: 234 IVVPVCNKIEAEIAELDDLEEMQMFLETMGMEEPGLNRVIRAGYSLLNLQTYFTAGVKEV 293
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT+R G TAPQAA VIH+DFEKGFIRAE VAYDDF+A + A+E G R EGKDYI
Sbjct: 294 RAWTVRVGATAPQAAAVIHTDFEKGFIRAEVVAYDDFIAYKGESGAKEAGKWRLEGKDYI 353
Query: 411 VQEGDVMLFRFNV 423
V++GDVM FRFNV
Sbjct: 354 VKDGDVMHFRFNV 366
>gi|291549483|emb|CBL25745.1| GTP-binding protein YchF [Ruminococcus torques L2-14]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/369 (53%), Positives = 273/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL VL + ++
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVTVPDKRLDVLGEMYHTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K +PA++EFVDIAGLVKGAS+GEGLGN+FL++IREVD+I+ VVRCFE+ +IVHV+G +DP
Sbjct: 60 KIIPAAIEFVDIAGLVKGASKGEGLGNQFLANIREVDAIVHVVRCFENTNIVHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +E+R+ K K D K+ E +++ L + K A+
Sbjct: 120 LRDIETINLELIFSDLEVLERRISKTVKLSRND---KMAAKELDLQNRLKAHLEENKMAK 176
Query: 237 S-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH-VNEVMNLASDLQSGRV 294
S VT ++ E+ + + LLT KP+I+ ANV+E DLAD G+N V V A
Sbjct: 177 SFVTEDEDEQAWLAEYNLLTAKPVIFAANVSEDDLADDGANNEGVKAVREYAKKENCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+ A++E E+++L +E+ +L LG+ ESGL LI+++Y LLGL +Y T+GE E +AWT
Sbjct: 237 VVCAEIEEEISQLDDDEKAMFLEDLGLEESGLEKLIKASYHLLGLISYLTAGEPEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IH+DFE+GFIRAE V+YDD +A G+ AAA+EKGL+R EGKDY+VQ+G
Sbjct: 297 IKKGTKAPQAAGKIHTDFERGFIRAEVVSYDDLMACGTHAAAKEKGLVRLEGKDYVVQDG 356
Query: 415 DVMLFRFNV 423
D+MLFRFNV
Sbjct: 357 DIMLFRFNV 365
>gi|404417111|ref|ZP_10998919.1| GTP-binding protein YchF [Staphylococcus arlettae CVD059]
gi|403490545|gb|EJY96082.1| GTP-binding protein YchF [Staphylococcus arlettae CVD059]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/369 (53%), Positives = 268/369 (72%), Gaps = 4/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL+VL+ + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDNRLNVLTEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++VIN+EL+ +DL+ +EKR+ KL+K + ++ + E L +++AL +G+P
Sbjct: 120 DPIDDIEVINMELILADLESVEKRLPKLEKMARQKDKNAVN--EVRILTTVKEALEEGRP 177
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ N+ ++ I Q LLT K ++Y+ANV E ++ D N V + AS S +
Sbjct: 178 VRSLEFNEEDQKYINQAQLLTSKDMLYIANVGEDEIGDE-DNEKVKAIREYASKEGSEVI 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
ISA++E E+ L ++R +L LG+ E GL LIR+TY+LLGL TYFT+G +E +AWT
Sbjct: 237 VISAKIEEEIATLDDDDRAMFLEDLGIEEPGLDILIRTTYNLLGLATYFTAGVEEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
+ GMTAPQ AG+IH+DFE+GFIRAE +YDD+V A+E G R EGKDYI+Q+G
Sbjct: 297 FKTGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVEFNGEHGAKEAGKQRLEGKDYIMQDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVHFRFNV 365
>gi|444351969|ref|YP_007388113.1| GTP-binding and nucleic acid-binding protein YchF [Enterobacter
aerogenes EA1509E]
gi|443902799|emb|CCG30573.1| GTP-binding and nucleic acid-binding protein YchF [Enterobacter
aerogenes EA1509E]
Length = 363
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/370 (54%), Positives = 268/370 (72%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + G +AANFPFCTIEPN G+V +PDPRL L+ + K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKAG-IEAANFPFCTIEPNTGVVPMPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
Q+ +P ++EFVDIAGLVKGAS+GEGLGN+FL++IRE ++I VVRCFE+++I+HV GKV
Sbjct: 60 PQRILPTTMEFVDIAGLVKGASKGEGLGNQFLTNIRETEAIGHVVRCFENDNIIHVAGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D+DVIN EL SDLD E+ + ++ KK K D +K+ E AALEK L
Sbjct: 120 DPAEDIDVINTELALSDLDTCERAIHRVSKKAKGGDKDAKI---ELAALEKCLPQLEKAG 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
R++ L+ E+D+I+ L LT+KP +Y+ANV E + NP++++V +A S
Sbjct: 177 MLRALDLSKEEKDAIRYLSFLTLKPTMYIANVNEDGFEN---NPYLDQVRAIAEQEGSVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + A VE+++ EL EER E++A LG+ E GL +IR+ Y+LL L+TYFT+G KE +AW
Sbjct: 234 VPVCAAVESDIAELDDEERDEFMAELGLEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
TI G TAPQAAG IH+DFEKGFIRA+T+AY+DF+A A+E G +R+EGKDYIV++
Sbjct: 294 TIPVGATAPQAAGKIHTDFEKGFIRAQTIAYEDFIAYKGEQGAKEAGKMRAEGKDYIVKD 353
Query: 414 GDVMLFRFNV 423
GDVM F FNV
Sbjct: 354 GDVMNFLFNV 363
>gi|418605187|ref|ZP_13168516.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU041]
gi|420220767|ref|ZP_14725725.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04008]
gi|420233195|ref|ZP_14737812.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051668]
gi|374402885|gb|EHQ73900.1| GTP-binding protein YchF [Staphylococcus epidermidis VCU041]
gi|394285806|gb|EJE29876.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH04008]
gi|394300403|gb|EJE43907.1| GTP-binding protein YchF [Staphylococcus epidermidis NIH051668]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDSRLIKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D ++ HV+G+V
Sbjct: 60 PKKTIPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDENVTHVSGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
+P D++VIN+ELV +DL+ +EKR+ K++K + KD +++ E L +I++AL DGK
Sbjct: 120 NPLDDIEVINMELVLADLESVEKRLPKIEKMARQKDKTAEM---ELRILTQIKEALEDGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A++ S
Sbjct: 177 PVRSIDFNEDDQKWVNQAQLLTSKKMLYMANVGEDEIGDK-DNDKVKAIREYAANEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYDLLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +Y+D+V G A+E G R EGKDYI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYEDYVQHGGENGAKEAGRQRLEGKDYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|306820419|ref|ZP_07454055.1| GTP-binding protein YchF [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|304551494|gb|EFM39449.1| GTP-binding protein YchF [Eubacterium yurii subsp. margaretiae ATCC
43715]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 195/369 (52%), Positives = 278/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+VAVPD R+ LS ++ S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVAVPDFRVDKLSEINHSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EFVDIAGLVKGAS+GEGLGNKFLSHIREV++I+ VVR FED+++VHV+G++ P
Sbjct: 60 KTVHTTIEFVDIAGLVKGASKGEGLGNKFLSHIREVEAIIHVVRAFEDSNVVHVDGEIGP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +++R+ K +K D + + E +EKI L +GK AR
Sbjct: 120 LRDIETINLELIFSDIEVLQRRLSKAQKAMKADKKMAV---EVELIEKILAVLEEGKCAR 176
Query: 237 SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRVT 295
++ + E + +K LLT +P+IYVANVAE + + G N V ++ + A S V
Sbjct: 177 TIDFTEKELEIVKDFNLLTDRPVIYVANVAEDEASTDGEGNDFVKQIKDFAQSENSQVVV 236
Query: 296 ISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTI 355
ISA++E +L++L EE+ E+L+ +G+ SGL L++++YSLLGL ++ T+GE ET+AWTI
Sbjct: 237 ISAKIEEDLSQLSDEEKKEFLSDMGMEYSGLEKLVKASYSLLGLISFLTTGEDETRAWTI 296
Query: 356 RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVA-AGSLAAAREKGLLRSEGKDYIVQEG 414
G AP AAG IHSD ++GFIRAET++Y++ V G+++ AR+KGL+RSEGKDY+V++G
Sbjct: 297 INGTKAPVAAGKIHSDIQRGFIRAETISYEELVEIGGNMSVARDKGLIRSEGKDYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVILFRFNV 365
>gi|160935721|ref|ZP_02083096.1| hypothetical protein CLOBOL_00611 [Clostridium bolteae ATCC
BAA-613]
gi|158441465|gb|EDP19175.1| hypothetical protein CLOBOL_00611 [Clostridium bolteae ATCC
BAA-613]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/369 (54%), Positives = 277/369 (75%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ + S+
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDVRLDKLTAMYNSE 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCF+D +++HV+G +DP
Sbjct: 60 KTTPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFDDPNVIHVDGSIDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K KG A +++ K+ E L+ I+ L DGK AR
Sbjct: 120 IRDIETINLELIFSDIEILERRIAKQSKG-AFNNKELAKEVE--LLKAIKAHLEDGKLAR 176
Query: 237 SVTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASDLQSGRV 294
S +D + + I L LLT KP+I+ ANVAE DLA+ G+ N +V V A +
Sbjct: 177 SFEPDDDDAMEFINTLNLLTWKPVIFAANVAEDDLANDGADNQYVQAVRGFAGENNCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A++E E+ EL +E+ +L LG++ESGL LI ++Y +LGL +Y T+G +E++AWT
Sbjct: 237 VICAEIEQEIAELDDDEKKMFLDDLGLTESGLEKLIAASYRILGLMSYLTAGPQESRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V YDD +A GS+ AA+EKGL+RSEGK+Y++++G
Sbjct: 297 IKVGTKAPQAAGKIHSDFERGFIRAEVVNYDDLMACGSMNAAKEKGLVRSEGKEYVMRDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|241759507|ref|ZP_04757611.1| GTP-binding protein YchF [Neisseria flavescens SK114]
gi|241320289|gb|EER56622.1| GTP-binding protein YchF [Neisseria flavescens SK114]
Length = 363
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/372 (55%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 175 GKPIRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+YIV
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYIV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|440781898|ref|ZP_20960126.1| GTP-binding protein YchF [Clostridium pasteurianum DSM 525]
gi|440220616|gb|ELP59823.1| GTP-binding protein YchF [Clostridium pasteurianum DSM 525]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/369 (56%), Positives = 270/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+R GIVGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V VPD RL VL + S+
Sbjct: 1 MRLGIVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVDVPDKRLDVLEKMYNSK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
+ V AS+EF DIAGLVKGAS+GEGLGNKFLSHIRE +I+ VVRCFED +IVHV G VDP
Sbjct: 60 RKVHASIEFYDIAGLVKGASKGEGLGNKFLSHIRESAAIVHVVRCFEDENIVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ I+LELVFSDL+ +E+RMEK +K ++ D +K AE +EKI+ L GKP
Sbjct: 120 IRDIETISLELVFSDLEVLERRMEKSIKLARSGDKTAK---AEMEIMEKIKSHLESGKPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESD-LADPGSNPHVNEVMNLASDLQSGRV 294
R++ L + E+ +K+L LLT KP++Y AN++E D L+ N V +V LA+ +S V
Sbjct: 177 RTLDLTEDEQLFVKELFLLTSKPVLYAANISEDDLLSGNAENEFVKKVRELANSEKSEIV 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
T+ A +E +L+ L EE E L+ G+ ESGL LI S+Y LLGL ++ T+G E +AWT
Sbjct: 237 TVCASLEEQLSTLTEEEEKEMLSEYGLEESGLDKLIASSYKLLGLMSFLTAGTDEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I G AP+AAG IH+D E+GFIRAE V+Y+D + GS AAA+EKGL R EGKDYI+++G
Sbjct: 297 ITNGTKAPKAAGKIHTDIERGFIRAEIVSYEDLINCGSEAAAKEKGLYRLEGKDYIMKDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|55820107|ref|YP_138549.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
thermophilus LMG 18311]
gi|55821997|ref|YP_140438.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
thermophilus CNRZ1066]
gi|418028499|ref|ZP_12667062.1| GTP-binding protein, probable translation factor [Streptococcus
thermophilus CNCM I-1630]
gi|445370137|ref|ZP_21425834.1| GTP-binding protein YchF [Streptococcus thermophilus MTCC 5460]
gi|445384993|ref|ZP_21427540.1| GTP-binding protein YchF [Streptococcus thermophilus MTCC 5461]
gi|55736092|gb|AAV59734.1| GTP-binding protein [Streptococcus thermophilus LMG 18311]
gi|55737982|gb|AAV61623.1| GTP-binding protein [Streptococcus thermophilus CNRZ1066]
gi|354687059|gb|EHE87168.1| GTP-binding protein, probable translation factor [Streptococcus
thermophilus CNCM I-1630]
gi|444751737|gb|ELW76444.1| GTP-binding protein YchF [Streptococcus thermophilus MTCC 5461]
gi|444751758|gb|ELW76464.1| GTP-binding protein YchF [Streptococcus thermophilus MTCC 5460]
Length = 371
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 200/373 (53%), Positives = 270/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLTKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIIHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DDFVDPMADIDTINLELILADLESINKRYARVEK-IARTQKDKDSVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E+ +K L LLT KP++YVANV E +A+P +V ++ A+
Sbjct: 179 DGKSARTIDFTEEEQKIVKGLFLLTTKPVLYVANVDEDQVANPDDIDYVKQIREFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+VE E++EL E++ +L LG++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARVEEEISELDDEDKEMFLEDLGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|336394167|ref|ZP_08575566.1| GTP-binding protein YchF [Lactobacillus farciminis KCTC 3681]
Length = 367
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 199/369 (53%), Positives = 266/369 (72%), Gaps = 2/369 (0%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TI+PNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIDPNVGMVEVPDSRLSRIDSLIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K + + EF DIAG+VKGAS+GEGLGNKFL +IR+VD+I+ VVR F+D+DI V GKV
Sbjct: 60 AKKLIHTTFEFTDIAGIVKGASKGEGLGNKFLENIRQVDAIVHVVRAFDDDDITSVTGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP D++ INLEL +DLD I KR +++K AK ++ K AE + LEKI+ L +G
Sbjct: 120 DPLDDIETINLELSIADLDSINKRYTRVEKA-AKSAKDKEAQAELSVLEKIKPVLEEGGA 178
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
RS+ ++ E+ +K L LLT KP++YVAN+AE D+ADP S+ + V + A + +
Sbjct: 179 VRSIDFDEDEQKIVKGLFLLTSKPVLYVANIAEEDMADPESSKYYKVVEDYAKKENAQVI 238
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA+ E E+ EL +ER E+L + GV+ESGL LI+++Y LLGLRT+FT+G KET+AWT
Sbjct: 239 GVSARTEEEIAELDDDERKEFLEAEGVTESGLDKLIKASYKLLGLRTFFTAGGKETRAWT 298
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
GM APQ AG+IHSDFE+GFIRAE +++ D GS A +E G LR EGKDY VQ+G
Sbjct: 299 FHEGMKAPQVAGIIHSDFERGFIRAEVMSFSDLDELGSEKAVKEAGKLRVEGKDYEVQDG 358
Query: 415 DVMLFRFNV 423
D++ FRFNV
Sbjct: 359 DIIEFRFNV 367
>gi|407973856|ref|ZP_11154767.1| GTP-binding protein YchF [Nitratireductor indicus C115]
gi|407430916|gb|EKF43589.1| GTP-binding protein YchF [Nitratireductor indicus C115]
Length = 367
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/374 (53%), Positives = 266/374 (71%), Gaps = 14/374 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL +S ++
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLRKISSVTG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEVIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK---GKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D + + EL+ +DL+ +E+R + +K GK K++ + L EK ALE +Q +
Sbjct: 121 DPVADAETVETELMLADLESLERRTAQTQKRATGKDKEAMTVLPMMEK-ALELLQ----N 175
Query: 232 GKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288
GKP R + L+ + +K L LLT KP++YV NVAE D A+ N H V +A
Sbjct: 176 GKPVR-LLLDGIAAEDLKILRGLNLLTSKPVLYVCNVAEGDAAE--GNEHSRAVAAMAES 232
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISA +EAE+ +LP E EYL ++G+ E GL LIR+ Y LL L T+FTSG K
Sbjct: 233 QGAMSVVISAAIEAEVAQLPDAEAAEYLEAMGLEEPGLDRLIRAGYELLDLITFFTSGPK 292
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
ET+AWT++ G APQAAGVIH+DFE+GFIRA+T+ YDDFV G AARE G R EGK+
Sbjct: 293 ETRAWTVKKGAKAPQAAGVIHTDFERGFIRAQTIGYDDFVTLGGEVAAREAGKSRDEGKE 352
Query: 409 YIVQEGDVMLFRFN 422
Y+V +GDVMLF+FN
Sbjct: 353 YVVTDGDVMLFKFN 366
>gi|159043506|ref|YP_001532300.1| GTP-dependent nucleic acid-binding protein EngD [Dinoroseobacter
shibae DFL 12]
gi|157911266|gb|ABV92699.1| GTP-binding protein YchF [Dinoroseobacter shibae DFL 12]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/374 (54%), Positives = 266/374 (71%), Gaps = 16/374 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ AQAANFPFCTIEPNVG VAVPDPRL L+ ++
Sbjct: 1 MGFKMGIVGLPNVGKSTLFNALTRTAAAQAANFPFCTIEPNVGEVAVPDPRLDRLAEIAG 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLVKGAS+GEGLGN+FL++IREVD+I V+RCFED D+ HV G+V
Sbjct: 61 SKQVIPTRMTFVDIAGLVKGASKGEGLGNQFLANIREVDAIAHVLRCFEDGDVTHVEGRV 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKD----SQSKLKDAEKAALEKIQQAL 229
DP +D I EL+ +D++ IEKR++ + +K + D Q +L A AALE
Sbjct: 121 DPIADAATIETELMLADMESIEKRLQNIVRKVRGGDKEAVQQERLMRAAMAALE------ 174
Query: 230 MDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGS-NPHVNEVMNLASD 288
+GKPAR+V ++ + + + L LLT KPI+YV NV D A GS N H V +A++
Sbjct: 175 -EGKPARAVAVDAEDAKAWRMLQLLTTKPILYVCNV---DEASAGSGNAHSKAVATMAAE 230
Query: 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK 348
+ V ISAQ+E E+++L EE +L+ +G+ E+GL LI++ Y+LL L TYFT+G K
Sbjct: 231 QGAAHVVISAQIEEEISQLDPEEAEMFLSEMGLEEAGLDRLIKAGYALLHLETYFTAGPK 290
Query: 349 ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKD 408
E +AWTI AG APQAAGVIH DFE+GFIRAET+AYDD+VA G AA+E G +R+EGK
Sbjct: 291 EARAWTIPAGTHAPQAAGVIHGDFERGFIRAETIAYDDYVALGGEQAAKEAGKMRAEGKS 350
Query: 409 YIVQEGDVMLFRFN 422
Y+V++GDV+ F FN
Sbjct: 351 YVVKDGDVLHFLFN 364
>gi|448743595|ref|ZP_21725502.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/Y21]
gi|445562880|gb|ELY19044.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/Y21]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +GK
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM---EVRILTTIKEALENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 177 PARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G R EGK+YI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVKYGGESGAKEAGRQRLEGKEYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|408411187|ref|ZP_11182363.1| Predicted GTPase, probable translation factor [Lactobacillus sp.
66c]
gi|409350893|ref|ZP_11233843.1| Predicted GTPase, probable translation factor [Lactobacillus
equicursoris CIP 110162]
gi|407874641|emb|CCK84169.1| Predicted GTPase, probable translation factor [Lactobacillus sp.
66c]
gi|407877102|emb|CCK85901.1| Predicted GTPase, probable translation factor [Lactobacillus
equicursoris CIP 110162]
Length = 366
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/370 (54%), Positives = 266/370 (71%), Gaps = 5/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+ AN+PF TIEPNVG+V VPD RL + L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEMANYPFATIEPNVGMVEVPDKRLARIQELIP 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++K V + EF DIAGLVKGAS+GEGLGNKFL +IR+ D+I+ VVR F+D++I V+GKV
Sbjct: 60 AKKVVHTTFEFTDIAGLVKGASKGEGLGNKFLENIRQTDAIVHVVRAFDDDNITSVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP+ D++ INLELV++DLD +++R+ K++K + KD ++ AE A LEKI+ L G
Sbjct: 120 DPEEDINTINLELVYADLDSVDRRISKVQKMAQQKDKEAM---AEYAVLEKIKPVLEAGD 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS+ D E +K L LLT KP+IYVAN+AE +ADP ++ + V A +G
Sbjct: 177 PVRSIKFTDDEAKIVKGLFLLTSKPVIYVANIAEESMADPEADKYYQIVKAHADKEGAGC 236
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA +E E+ L EE+ E LA+ GV ESGL LIR+ Y LLGLRT+FT+G KET+AW
Sbjct: 237 LGISAAIEEEIAGLDDEEKAEMLAAEGVEESGLDRLIRAAYHLLGLRTFFTAGGKETRAW 296
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GM APQ AG+IHSDFE+GFIRAE V++DD ++ +E G +R EGKDY VQ+
Sbjct: 297 TFKQGMKAPQVAGIIHSDFERGFIRAEVVSFDDLDKYETMQKIKEAGRVRLEGKDYEVQD 356
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 357 GDIIEFRFNV 366
>gi|392405668|ref|YP_006442280.1| GTP-binding protein YchF [Turneriella parva DSM 21527]
gi|390613622|gb|AFM14774.1| GTP-binding protein YchF [Turneriella parva DSM 21527]
Length = 378
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 192/370 (51%), Positives = 267/370 (72%), Gaps = 4/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M L+ GIVGLPNVGKST+FNA+ ++ A+A N+PFCTI+PNVG+VAVPDPR L + +
Sbjct: 12 MPLQCGIVGLPNVGKSTIFNALTKSHSAEAQNYPFCTIDPNVGVVAVPDPRFDYLVKIVE 71
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ +VP +VEFVDIAGLVKGASQGEGLGNKFL HIR+V++IL VVRCF+D ++ HV+G V
Sbjct: 72 PKSSVPVAVEFVDIAGLVKGASQGEGLGNKFLDHIRKVNAILHVVRCFQDENVTHVSGAV 131
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGK 233
PKSDV++I LEL+ SDLDQ++KR++ LKK K+ D ++ + A LE++ + L GK
Sbjct: 132 SPKSDVEIIELELILSDLDQVDKRLQNLLKKKKSGDKEAV---EQSAVLERVAETLKAGK 188
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PA + L+ +R++IK L LL++KP++++ N+ E LA P +P E+ +A + +
Sbjct: 189 PASAAGLSADDREAIKDLALLSLKPVLFIGNIDEKLLAHPEESPEFRELQQVAKERGAEA 248
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ +S ++EAE+ +L EE E+L+ LG+SE GL +IR Y LLG T+FT+GE E +AW
Sbjct: 249 IPLSGKIEAEIGQLSPEEEKEFLSDLGLSEPGLNRVIREAYGLLGYITFFTAGEVEVRAW 308
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
I G TAPQAAG IHSD E+GFIRAE + G+ A+E G +R EGK+Y++Q+
Sbjct: 309 NIVKGETAPQAAGTIHSDIERGFIRAEVTPFSAVEEYGTQKKAQEAGKMRLEGKEYVMQD 368
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 369 GDVVYFRFNV 378
>gi|298370329|ref|ZP_06981645.1| GTP-binding protein YchF [Neisseria sp. oral taxon 014 str. F0314]
gi|340361741|ref|ZP_08684155.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria macacae
ATCC 33926]
gi|298281789|gb|EFI23278.1| GTP-binding protein YchF [Neisseria sp. oral taxon 014 str. F0314]
gi|339888161|gb|EGQ77637.1| GTP-dependent nucleic acid-binding protein EngD [Neisseria macacae
ATCC 33926]
Length = 363
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/372 (54%), Positives = 267/372 (71%), Gaps = 12/372 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP +D++ I EL +DL +EK R EK + KD+Q ++ +K+ L +
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVREEKRARSGDKDAQKLVE-----LCKKLLPHLDE 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
GKP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 175 GKPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAEKENA 231
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +
Sbjct: 232 PVVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVR 291
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+V
Sbjct: 292 AWTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVV 351
Query: 412 QEGDVMLFRFNV 423
Q+GDVM F FNV
Sbjct: 352 QDGDVMHFLFNV 363
>gi|94543021|gb|ABF33069.1| GTP-binding protein, probable translation factor [Streptococcus
pyogenes MGAS10270]
Length = 371
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/373 (53%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNILQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +A+P +V ++ + A+
Sbjct: 179 DGKSARTIEFTEDEAKVVKGLFLLTTKPVLYVANVDEDKVANPDGIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|152987964|ref|YP_001350654.1| GTP-dependent nucleic acid-binding protein EngD [Pseudomonas
aeruginosa PA7]
gi|452877563|ref|ZP_21954839.1| GTP-binding protein YchF [Pseudomonas aeruginosa VRFPA01]
gi|150963122|gb|ABR85147.1| GTP-binding protein YchF [Pseudomonas aeruginosa PA7]
gi|452185692|gb|EME12710.1| GTP-binding protein YchF [Pseudomonas aeruginosa VRFPA01]
Length = 366
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/372 (54%), Positives = 269/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PD RL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDARLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
++ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV+ V
Sbjct: 60 PERVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DP+ D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GKP
Sbjct: 120 DPRRDIEIIDLELIFADLDSCEKQLQKVSRNAKGGDKEAL--AQKALLEKLIPHFTEGKP 177
Query: 235 ARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ L D E+ ++ LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 178 ARSLLKNLGDEEKRLVRSFHLLTSKPVMYIANVAEDGFEN---NPHLDVVKAIAEEEGAV 234
Query: 293 RVTISAQVEAELTELP-SEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + ++EAE+ EL EE+ +L SLG+ E GL +IR+ Y LL L+TYFT+G KE +
Sbjct: 235 VVPVCNKIEAEIAELEDGEEKDMFLESLGLEEPGLNRVIRAGYGLLNLQTYFTAGVKEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGKDYIV
Sbjct: 295 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQFKGEQGAKEAGKWRLEGKDYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 355 KDGDVMHFRFNV 366
>gi|307544464|ref|YP_003896943.1| translation-associated GTPase [Halomonas elongata DSM 2581]
gi|307216488|emb|CBV41758.1| translation-associated GTPase [Halomonas elongata DSM 2581]
Length = 363
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/370 (52%), Positives = 271/370 (73%), Gaps = 8/370 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A NFPFCTIEPNVGIV +PDPRL L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSG-IDAENFPFCTIEPNVGIVPMPDPRLDKLAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK +P ++EFVDIAGLV GAS+GEGLGN+FL++IRE +I VVRCF++++++HV+ +V
Sbjct: 60 PQKVIPTTMEFVDIAGLVAGASKGEGLGNQFLANIRETQAIAHVVRCFDNDNVIHVSNQV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP++D++ INLEL +DLD +E+ +++L + K D ++ A KA L++IQ L +G+
Sbjct: 120 DPRADIETINLELALADLDTVERAIQRLARVVKGGDKEAI---ATKAILDRIQPHLAEGQ 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
P RS L+D E+ +K LLT+KP +Y+ANV E +NP+++ V +A++ +
Sbjct: 177 PLRSFGLDDDEKHQLKSFGLLTLKPTMYIANVNEDGFE---NNPYLDTVNEIAAEEGAVV 233
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
V + Q+EAE+ EL EER +L +G+ E GL +IR+ Y+LLGL+TYFT+G KE +AW
Sbjct: 234 VPVCNQIEAEIAELDDEERAMFLDEMGMEEPGLDRVIRAGYALLGLQTYFTAGVKEVRAW 293
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T++ G TAP+ AGVIH+DF+KGFIRAE VAYDDFVA G A++ G R EGKDY++++
Sbjct: 294 TVKIGATAPEGAGVIHTDFQKGFIRAEVVAYDDFVALGGEQGAKDAGKWRLEGKDYVLKD 353
Query: 414 GDVMLFRFNV 423
GDV+ FRFNV
Sbjct: 354 GDVVHFRFNV 363
>gi|15923353|ref|NP_370887.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu50]
gi|15926064|ref|NP_373597.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus N315]
gi|21282068|ref|NP_645156.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MW2]
gi|49482593|ref|YP_039817.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MRSA252]
gi|49485243|ref|YP_042464.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MSSA476]
gi|57652623|ref|YP_185326.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus COL]
gi|87160850|ref|YP_493078.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus USA300_FPR3757]
gi|88194145|ref|YP_498935.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus NCTC 8325]
gi|148266850|ref|YP_001245793.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JH9]
gi|150392896|ref|YP_001315571.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus JH1]
gi|151220567|ref|YP_001331389.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newman]
gi|156978691|ref|YP_001440950.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu3]
gi|161508634|ref|YP_001574293.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus USA300_TCH1516]
gi|221142671|ref|ZP_03567164.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
str. JKD6009]
gi|253316536|ref|ZP_04839749.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. CF-Marseille]
gi|253730726|ref|ZP_04864891.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253735105|ref|ZP_04869270.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|255005158|ref|ZP_05143759.2| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus Mu50-omega]
gi|257424507|ref|ZP_05600936.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
55/2053]
gi|257427176|ref|ZP_05603578.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
65-1322]
gi|257429812|ref|ZP_05606199.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257432516|ref|ZP_05608879.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257435418|ref|ZP_05611469.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M876]
gi|257794198|ref|ZP_05643177.1| GTP-binding protein YchF [Staphylococcus aureus A9781]
gi|258413517|ref|ZP_05681792.1| translation-associated GTPase [Staphylococcus aureus A9763]
gi|258421359|ref|ZP_05684286.1| GTP-binding protein YchF [Staphylococcus aureus A9719]
gi|258436940|ref|ZP_05689280.1| translation-associated GTPase [Staphylococcus aureus A9299]
gi|258444343|ref|ZP_05692677.1| translation-associated GTPase [Staphylococcus aureus A8115]
gi|258444880|ref|ZP_05693201.1| translation-associated GTPase [Staphylococcus aureus A6300]
gi|258448085|ref|ZP_05696214.1| translation-associated GTPase [Staphylococcus aureus A6224]
gi|258453044|ref|ZP_05701037.1| translation-associated GTPase [Staphylococcus aureus A5948]
gi|258455918|ref|ZP_05703873.1| translation-associated GTPase [Staphylococcus aureus A5937]
gi|262048925|ref|ZP_06021805.1| hypothetical protein SAD30_0771 [Staphylococcus aureus D30]
gi|262052850|ref|ZP_06025035.1| hypothetical protein SA930_1148 [Staphylococcus aureus 930918-3]
gi|269202011|ref|YP_003281280.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ED98]
gi|282893523|ref|ZP_06301756.1| GTP-binding protein YchF [Staphylococcus aureus A8117]
gi|282902948|ref|ZP_06310841.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C160]
gi|282907346|ref|ZP_06315194.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282907689|ref|ZP_06315531.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282912596|ref|ZP_06320392.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282913221|ref|ZP_06321013.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M899]
gi|282915685|ref|ZP_06323456.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus D139]
gi|282921660|ref|ZP_06329378.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C427]
gi|282922336|ref|ZP_06330027.1| GTP-binding protein YchF [Staphylococcus aureus A9765]
gi|282922848|ref|ZP_06330538.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C101]
gi|282927417|ref|ZP_06335035.1| GTP-binding protein YchF [Staphylococcus aureus A10102]
gi|283768091|ref|ZP_06341006.1| ychF translation-associated GTPase [Staphylococcus aureus subsp.
aureus H19]
gi|283959801|ref|ZP_06377242.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
A017934/97]
gi|284023372|ref|ZP_06377770.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus 132]
gi|293498270|ref|ZP_06666124.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
58-424]
gi|293509211|ref|ZP_06667929.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M809]
gi|293550475|ref|ZP_06673147.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
M1015]
gi|294850011|ref|ZP_06790749.1| GTP-binding protein YchF [Staphylococcus aureus A9754]
gi|295405635|ref|ZP_06815445.1| GTP-binding protein YchF [Staphylococcus aureus A8819]
gi|295426897|ref|ZP_06819536.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296275190|ref|ZP_06857697.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus MR1]
gi|297209124|ref|ZP_06925523.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297245542|ref|ZP_06929410.1| GTP-binding protein YchF [Staphylococcus aureus A8796]
gi|297588891|ref|ZP_06947532.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus MN8]
gi|300911125|ref|ZP_07128574.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH70]
gi|304380328|ref|ZP_07363048.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|379013677|ref|YP_005289913.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus VC40]
gi|379020146|ref|YP_005296808.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus subsp. aureus M013]
gi|384546650|ref|YP_005735903.1| hypothetical protein SAOV_0387 [Staphylococcus aureus subsp. aureus
ED133]
gi|384861006|ref|YP_005743726.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|384863718|ref|YP_005749077.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|384866018|ref|YP_005746214.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH60]
gi|384868921|ref|YP_005751635.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
T0131]
gi|385780647|ref|YP_005756818.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
11819-97]
gi|386728143|ref|YP_006194526.1| hypothetical protein ST398NM01_0443 [Staphylococcus aureus subsp.
aureus 71193]
gi|387142056|ref|YP_005730449.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
TW20]
gi|387149546|ref|YP_005741110.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus 04-02981]
gi|387779533|ref|YP_005754331.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|404477751|ref|YP_006709181.1| ychF, translation-associated GTPase [Staphylococcus aureus
08BA02176]
gi|415683422|ref|ZP_11448655.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|415687110|ref|ZP_11451078.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|415692461|ref|ZP_11454422.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|416842286|ref|ZP_11904932.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O11]
gi|417650212|ref|ZP_12299986.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21189]
gi|417652045|ref|ZP_12301801.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21172]
gi|417654025|ref|ZP_12303753.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21193]
gi|417795863|ref|ZP_12443081.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21305]
gi|417887508|ref|ZP_12531633.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21195]
gi|417893768|ref|ZP_12537791.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21201]
gi|417897152|ref|ZP_12541091.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21235]
gi|417898597|ref|ZP_12542516.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21259]
gi|417904789|ref|ZP_12548608.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21269]
gi|418279792|ref|ZP_12892970.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21178]
gi|418285229|ref|ZP_12897915.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21209]
gi|418311695|ref|ZP_12923217.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21331]
gi|418313478|ref|ZP_12924966.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21334]
gi|418316317|ref|ZP_12927758.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21340]
gi|418317444|ref|ZP_12928863.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21232]
gi|418320612|ref|ZP_12931966.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
VCU006]
gi|418423555|ref|ZP_12996706.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS1]
gi|418426497|ref|ZP_12999529.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS2]
gi|418429426|ref|ZP_13002363.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS3a]
gi|418432322|ref|ZP_13005126.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS4]
gi|418436032|ref|ZP_13007855.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS5]
gi|418438930|ref|ZP_13010656.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS6]
gi|418441916|ref|ZP_13013537.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS7]
gi|418445039|ref|ZP_13016535.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS8]
gi|418447984|ref|ZP_13019393.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS9]
gi|418450810|ref|ZP_13022155.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS10]
gi|418453824|ref|ZP_13025101.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11a]
gi|418456729|ref|ZP_13027947.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11b]
gi|418562869|ref|ZP_13127321.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21262]
gi|418566251|ref|ZP_13130633.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21264]
gi|418567803|ref|ZP_13132167.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21272]
gi|418569917|ref|ZP_13134220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21283]
gi|418573653|ref|ZP_13137839.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21333]
gi|418578288|ref|ZP_13142384.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|418581036|ref|ZP_13145121.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|418597872|ref|ZP_13161390.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21342]
gi|418598099|ref|ZP_13161612.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21343]
gi|418602879|ref|ZP_13166275.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21345]
gi|418639042|ref|ZP_13201312.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-3]
gi|418642401|ref|ZP_13204592.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-24]
gi|418644309|ref|ZP_13206456.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-55]
gi|418647318|ref|ZP_13209383.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-88]
gi|418650014|ref|ZP_13212041.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-91]
gi|418652603|ref|ZP_13214570.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-99]
gi|418658516|ref|ZP_13220235.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-111]
gi|418871017|ref|ZP_13425407.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-125]
gi|418874406|ref|ZP_13428674.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|418877272|ref|ZP_13431512.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|418880073|ref|ZP_13434295.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|418883019|ref|ZP_13437221.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|418885650|ref|ZP_13439803.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|418890884|ref|ZP_13445006.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|418893844|ref|ZP_13447947.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|418896748|ref|ZP_13450823.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|418899666|ref|ZP_13453729.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|418902616|ref|ZP_13456659.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|418905209|ref|ZP_13459236.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|418908085|ref|ZP_13462099.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG149]
gi|418911030|ref|ZP_13465015.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG547]
gi|418913615|ref|ZP_13467589.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|418916207|ref|ZP_13470171.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|418919201|ref|ZP_13473149.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|418921993|ref|ZP_13475913.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|418926136|ref|ZP_13480036.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|418927659|ref|ZP_13481548.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|418931661|ref|ZP_13485501.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|418933348|ref|ZP_13487174.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|418947694|ref|ZP_13500039.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-157]
gi|418951358|ref|ZP_13503460.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-160]
gi|418955042|ref|ZP_13506991.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-189]
gi|418979097|ref|ZP_13526895.1| hypothetical protein ST398NM02_0443 [Staphylococcus aureus subsp.
aureus DR10]
gi|418981267|ref|ZP_13528983.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|418984860|ref|ZP_13532553.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|418987320|ref|ZP_13534995.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|418990278|ref|ZP_13537941.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|419774694|ref|ZP_14300652.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
CO-23]
gi|419784311|ref|ZP_14310086.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-M]
gi|421149158|ref|ZP_15608817.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|422743786|ref|ZP_16797768.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA177]
gi|422747379|ref|ZP_16801296.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA131]
gi|424777372|ref|ZP_18204337.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus CM05]
gi|424784201|ref|ZP_18211017.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus CN79]
gi|440706490|ref|ZP_20887223.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21282]
gi|440736381|ref|ZP_20915982.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|443635476|ref|ZP_21119605.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21236]
gi|443638363|ref|ZP_21122409.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21196]
gi|448740125|ref|ZP_21722110.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/314250]
gi|13700277|dbj|BAB41575.1| SA0351 [Staphylococcus aureus subsp. aureus N315]
gi|14246131|dbj|BAB56525.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
Mu50]
gi|21203504|dbj|BAB94204.1| MW0339 [Staphylococcus aureus subsp. aureus MW2]
gi|49240722|emb|CAG39383.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49243686|emb|CAG42110.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSSA476]
gi|57286809|gb|AAW38903.1| conserved hypothetical protein TIGR00092 [Staphylococcus aureus
subsp. aureus COL]
gi|87126824|gb|ABD21338.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|87201703|gb|ABD29513.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
NCTC 8325]
gi|147739919|gb|ABQ48217.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus JH9]
gi|149945348|gb|ABR51284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus JH1]
gi|150373367|dbj|BAF66627.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
str. Newman]
gi|156720826|dbj|BAF77243.1| hypothetical protein SAHV_0360 [Staphylococcus aureus subsp. aureus
Mu3]
gi|160367443|gb|ABX28414.1| possible GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|253725570|gb|EES94299.1| GTP-binding protein [Staphylococcus aureus subsp. aureus
USA300_TCH959]
gi|253726905|gb|EES95634.1| GTP-binding protein [Staphylococcus aureus subsp. aureus TCH130]
gi|257273525|gb|EEV05627.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
55/2053]
gi|257276807|gb|EEV08258.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
65-1322]
gi|257280293|gb|EEV10880.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
68-397]
gi|257283395|gb|EEV13527.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
E1410]
gi|257286014|gb|EEV16130.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M876]
gi|257788170|gb|EEV26510.1| GTP-binding protein YchF [Staphylococcus aureus A9781]
gi|257839764|gb|EEV64233.1| translation-associated GTPase [Staphylococcus aureus A9763]
gi|257842783|gb|EEV67205.1| GTP-binding protein YchF [Staphylococcus aureus A9719]
gi|257848731|gb|EEV72718.1| translation-associated GTPase [Staphylococcus aureus A9299]
gi|257850602|gb|EEV74550.1| translation-associated GTPase [Staphylococcus aureus A8115]
gi|257856198|gb|EEV79112.1| translation-associated GTPase [Staphylococcus aureus A6300]
gi|257858600|gb|EEV81474.1| translation-associated GTPase [Staphylococcus aureus A6224]
gi|257859254|gb|EEV82109.1| translation-associated GTPase [Staphylococcus aureus A5948]
gi|257862130|gb|EEV84903.1| translation-associated GTPase [Staphylococcus aureus A5937]
gi|259159251|gb|EEW44310.1| hypothetical protein SA930_1148 [Staphylococcus aureus 930918-3]
gi|259162997|gb|EEW47559.1| hypothetical protein SAD30_0771 [Staphylococcus aureus D30]
gi|262074301|gb|ACY10274.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ED98]
gi|269939943|emb|CBI48315.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
TW20]
gi|282315069|gb|EFB45455.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C101]
gi|282316075|gb|EFB46459.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C427]
gi|282320501|gb|EFB50840.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus D139]
gi|282323321|gb|EFB53640.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M899]
gi|282324292|gb|EFB54608.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WBG10049]
gi|282328594|gb|EFB58865.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
WW2703/97]
gi|282330245|gb|EFB59766.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
Btn1260]
gi|282590741|gb|EFB95817.1| GTP-binding protein YchF [Staphylococcus aureus A10102]
gi|282593462|gb|EFB98457.1| GTP-binding protein YchF [Staphylococcus aureus A9765]
gi|282597407|gb|EFC02366.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus C160]
gi|282764209|gb|EFC04336.1| GTP-binding protein YchF [Staphylococcus aureus A8117]
gi|283461970|gb|EFC09054.1| ychF translation-associated GTPase [Staphylococcus aureus subsp.
aureus H19]
gi|283789393|gb|EFC28220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
A017934/97]
gi|285816085|gb|ADC36572.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus 04-02981]
gi|290919522|gb|EFD96598.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
M1015]
gi|291097201|gb|EFE27459.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
58-424]
gi|291467963|gb|EFF10471.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus M809]
gi|294823145|gb|EFG39576.1| GTP-binding protein YchF [Staphylococcus aureus A9754]
gi|294969710|gb|EFG45729.1| GTP-binding protein YchF [Staphylococcus aureus A8819]
gi|295129349|gb|EFG58976.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
EMRSA16]
gi|296886057|gb|EFH24991.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
51811]
gi|297177528|gb|EFH36779.1| GTP-binding protein YchF [Staphylococcus aureus A8796]
gi|297577402|gb|EFH96115.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus MN8]
gi|298693701|gb|ADI96923.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ED133]
gi|300887304|gb|EFK82500.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH70]
gi|302750235|gb|ADL64412.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. JKD6008]
gi|304341309|gb|EFM07228.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus ATCC
BAA-39]
gi|312436523|gb|ADQ75594.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
TCH60]
gi|312828885|emb|CBX33727.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus ECT-R 2]
gi|315130010|gb|EFT85999.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS03]
gi|315194822|gb|EFU25211.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS00]
gi|315198044|gb|EFU28376.1| translation-associated GTPase [Staphylococcus aureus subsp. aureus
CGS01]
gi|320139329|gb|EFW31208.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA131]
gi|320142879|gb|EFW34675.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
MRSA177]
gi|323438823|gb|EGA96561.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus O11]
gi|329313056|gb|AEB87469.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
T0131]
gi|329724230|gb|EGG60743.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21189]
gi|329725875|gb|EGG62354.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21172]
gi|329732584|gb|EGG68934.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21193]
gi|334270794|gb|EGL89194.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21305]
gi|341839899|gb|EGS81441.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21235]
gi|341845810|gb|EGS87010.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21269]
gi|341848119|gb|EGS89286.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21259]
gi|341853275|gb|EGS94156.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21201]
gi|341857665|gb|EGS98476.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21195]
gi|344176635|emb|CCC87094.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
LGA251]
gi|359829455|gb|AEV77433.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus subsp. aureus M013]
gi|364521636|gb|AEW64386.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
11819-97]
gi|365170052|gb|EHM61137.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21178]
gi|365171016|gb|EHM61897.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21209]
gi|365226402|gb|EHM67618.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
VCU006]
gi|365233806|gb|EHM74749.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21331]
gi|365235830|gb|EHM76740.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21334]
gi|365241566|gb|EHM82311.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21340]
gi|365245321|gb|EHM85963.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21232]
gi|371970975|gb|EHO88386.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21264]
gi|371972937|gb|EHO90304.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21262]
gi|371981323|gb|EHO98505.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21333]
gi|371982448|gb|EHO99608.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21272]
gi|371985222|gb|EHP02306.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21283]
gi|374362374|gb|AEZ36479.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus VC40]
gi|374393282|gb|EHQ64596.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21342]
gi|374394406|gb|EHQ65692.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21345]
gi|374400162|gb|EHQ71284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21343]
gi|375016893|gb|EHS10527.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-24]
gi|375019668|gb|EHS13220.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-3]
gi|375021958|gb|EHS15453.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-99]
gi|375026085|gb|EHS19475.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-55]
gi|375029234|gb|EHS22564.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-91]
gi|375030177|gb|EHS23500.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-88]
gi|375038242|gb|EHS31233.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-111]
gi|375369360|gb|EHS73241.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-125]
gi|375371715|gb|EHS75480.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-189]
gi|375373230|gb|EHS76921.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-160]
gi|375374692|gb|EHS78318.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-157]
gi|377697967|gb|EHT22320.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1165]
gi|377698186|gb|EHT22536.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1114]
gi|377700361|gb|EHT24700.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1057]
gi|377706885|gb|EHT31180.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1214]
gi|377708538|gb|EHT32827.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1242]
gi|377708939|gb|EHT33219.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1500]
gi|377712831|gb|EHT37047.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1605]
gi|377714251|gb|EHT38454.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1750]
gi|377717245|gb|EHT41422.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1769]
gi|377720735|gb|EHT44890.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1835]
gi|377724278|gb|EHT48395.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1096]
gi|377726897|gb|EHT51007.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG547]
gi|377727736|gb|EHT51839.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1150]
gi|377733831|gb|EHT57872.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1213]
gi|377734049|gb|EHT58089.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1176]
gi|377736533|gb|EHT60549.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1233]
gi|377740215|gb|EHT64214.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1612]
gi|377743513|gb|EHT67494.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG2018]
gi|377743629|gb|EHT67608.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1770]
gi|377752436|gb|EHT76359.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG1267]
gi|377757308|gb|EHT81197.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIG149]
gi|377759658|gb|EHT83539.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC340D]
gi|377762970|gb|EHT86831.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC341D]
gi|377764509|gb|EHT88359.1| GTPase family protein [Staphylococcus aureus subsp. aureus
CIGC345D]
gi|377768253|gb|EHT92038.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC348]
gi|377772354|gb|EHT96104.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC93]
gi|377773522|gb|EHT97268.1| GTPase family protein [Staphylococcus aureus subsp. aureus CIGC128]
gi|379993035|gb|EIA14483.1| hypothetical protein ST398NM02_0443 [Staphylococcus aureus subsp.
aureus DR10]
gi|383364515|gb|EID41829.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus IS-M]
gi|383971503|gb|EID87577.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
CO-23]
gi|384229436|gb|AFH68683.1| hypothetical protein ST398NM01_0443 [Staphylococcus aureus subsp.
aureus 71193]
gi|387721536|gb|EIK09398.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS3a]
gi|387721622|gb|EIK09481.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS2]
gi|387722857|gb|EIK10637.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS1]
gi|387728211|gb|EIK15708.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS4]
gi|387730114|gb|EIK17525.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS5]
gi|387732084|gb|EIK19334.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS6]
gi|387738881|gb|EIK25897.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS8]
gi|387739893|gb|EIK26874.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS9]
gi|387740258|gb|EIK27218.1| GTP-dependent nucleic acid-binding protein engD [Staphylococcus
aureus subsp. aureus VRS7]
gi|387747558|gb|EIK34265.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS10]
gi|387748569|gb|EIK35239.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11a]
gi|387749556|gb|EIK36180.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus VRS11b]
gi|394331260|gb|EJE57348.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus str. Newbould 305]
gi|402346451|gb|EJU81538.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus CM05]
gi|404439240|gb|AFR72433.1| ychF, translation-associated GTPase [Staphylococcus aureus
08BA02176]
gi|408422850|emb|CCJ10261.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408424838|emb|CCJ12225.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408426827|emb|CCJ14190.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408428815|emb|CCJ25980.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus ST228]
gi|408430803|emb|CCJ18118.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408432797|emb|CCJ20082.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408434786|emb|CCJ22046.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|408436771|emb|CCJ24014.1| Putative GTP-binding protein [Staphylococcus aureus subsp. aureus
ST228]
gi|421957567|gb|EKU09886.1| GTP-binding and nucleic acid-binding protein YchF [Staphylococcus
aureus CN79]
gi|436430148|gb|ELP27512.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus subsp. aureus DSM 20231]
gi|436507027|gb|ELP42762.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21282]
gi|443409493|gb|ELS67988.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21236]
gi|443409642|gb|ELS68136.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21196]
gi|445549183|gb|ELY17424.1| GTP-dependent nucleic acid-binding protein EngD [Staphylococcus
aureus KT/314250]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +GK
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM---EVRILTTIKEALENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 177 PARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G R EGK+YI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|418183798|ref|ZP_12820352.1| GTPase family protein [Streptococcus pneumoniae GA43380]
gi|353846816|gb|EHE26844.1| GTPase family protein [Streptococcus pneumoniae GA43380]
Length = 369
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/371 (53%), Positives = 270/371 (72%), Gaps = 6/371 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
+ AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ + +
Sbjct: 1 MTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTEMITPK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK--- 173
K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F+D +++ G+
Sbjct: 60 KTVPTTFEFTDIAGIVKGASKGEGLGNKFLANIREVDAIVHVVRAFDDENVMREQGREDA 119
Query: 174 -VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDG 232
VDP +D+D INLEL+ +DL+ + KR +++K A+ + K AE L+KI+ L DG
Sbjct: 120 FVDPLADIDTINLELILADLESVNKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLEDG 178
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
K AR++ D E+ +K L LLT KP++YVANV E +++P S +V ++ A+ +
Sbjct: 179 KSARTIEFTDEEQKVVKGLFLLTTKPVLYVANVDEDVVSEPDSIDYVKQIREFAATENAE 238
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE +A
Sbjct: 239 VVVISARAEEEISELDDEDKKEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEVRA 298
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WT + GM APQAAG+IHSDFEKGFIRA T++Y+D V GS A +E G LR EGK+YIVQ
Sbjct: 299 WTFKRGMKAPQAAGIIHSDFEKGFIRAVTMSYEDLVKYGSEKAVKEAGRLREEGKEYIVQ 358
Query: 413 EGDVMLFRFNV 423
+GD+M FRFNV
Sbjct: 359 DGDIMEFRFNV 369
>gi|15674254|ref|NP_268427.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pyogenes SF370]
gi|71909818|ref|YP_281368.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
pyogenes MGAS5005]
gi|410679699|ref|YP_006932101.1| GTPase [Streptococcus pyogenes A20]
gi|13621329|gb|AAK33149.1| putative GTP-binding protein [Streptococcus pyogenes M1 GAS]
gi|71852600|gb|AAZ50623.1| GTP-binding protein [Streptococcus pyogenes MGAS5005]
gi|395453043|dbj|BAM29382.1| GTP-dependent nucleic acid-binding protein [Streptococcus pyogenes
M1 476]
gi|409692288|gb|AFV37148.1| GTPase of unknown function family protein [Streptococcus pyogenes
A20]
Length = 371
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/373 (52%), Positives = 271/373 (72%), Gaps = 6/373 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDERLQKLTELIT 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IRE+D+I+ VVR F+D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREIDAIVHVVRAFDDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALM 230
VDP +D+D INLEL+ +DL+ I KR +++K A+ + K AE L+KI+ L
Sbjct: 120 DAFVDPIADIDTINLELILADLESINKRYARVEK-MARTQKDKESVAEFNVLQKIKPVLE 178
Query: 231 DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ 290
DGK AR++ + E +K L LLT KP++YVANV E +A+P +V ++ + A+
Sbjct: 179 DGKSARTIEFTEDEAKVVKGLFLLTTKPVLYVANVDEDKVANPDGIDYVKQIRDFAATEN 238
Query: 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKET 350
+ V ISA+ E E++EL E++ E+L ++G++ESG+ L R+ Y LLGL TYFT+GEKE
Sbjct: 239 AEVVVISARAEEEISELDDEDKEEFLEAIGLTESGVDKLTRAAYHLLGLGTYFTAGEKEV 298
Query: 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYI 410
+AWT + G+ APQAAG+IHSDFE+GFIRA T++YDD + GS A +E G LR EGK+Y+
Sbjct: 299 RAWTFKRGIKAPQAAGIIHSDFERGFIRAVTMSYDDLMTYGSEKAVKEAGRLREEGKEYV 358
Query: 411 VQEGDVMLFRFNV 423
VQ+GD+M FRFNV
Sbjct: 359 VQDGDIMEFRFNV 371
>gi|49086120|gb|AAT51329.1| PA4673, partial [synthetic construct]
Length = 367
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/372 (54%), Positives = 268/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M GIVGLPNVGKSTLFNA+ ++G A A NFPFCTIEPN GIV +PD RL+ L+ + K
Sbjct: 1 MGFNCGIVGLPNVGKSTLFNALTKSGIA-AENFPFCTIEPNSGIVPMPDARLNALAEIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+ +P ++EFVDIAGLV GAS+GEGLGNKFL++IRE D+I VVRCFED++++HV+ V
Sbjct: 60 PEHVLPTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIAHVVRCFEDDNVIHVSNSV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
DPK D+++I+LEL+F+DLD EK+++K+ + + L A+KA LEK+ +GKP
Sbjct: 120 DPKRDIEIIDLELIFADLDSCEKQLQKVARNAKGGDKEAL--AQKALLEKLIPHFTEGKP 177
Query: 235 ARSV--TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
ARS+ L D E+ ++ LLT KP++Y+ANVAE + NPH++ V +A + +
Sbjct: 178 ARSLLKNLGDEEKRLVRSFHLLTSKPVMYIANVAEDGFEN---NPHLDVVKAIAEEEGAV 234
Query: 293 RVTISAQVEAELTELP-SEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
V + ++EAE+ EL EE+ +L SLG+ E GL +IR+ Y LL L+TYFT+G KE +
Sbjct: 235 VVPVCNKIEAEIAELEDGEEKDMFLESLGLEEPGLNRVIRAGYGLLNLQTYFTAGVKEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT+R G TAPQAAGVIH+DFEKGFIRAE VAYDDF+ A+E G R EGKDYIV
Sbjct: 295 AWTVRVGATAPQAAGVIHTDFEKGFIRAEVVAYDDFIQFKGEQGAKEAGKWRLEGKDYIV 354
Query: 412 QEGDVMLFRFNV 423
++GDVM FRFNV
Sbjct: 355 KDGDVMHFRFNV 366
>gi|302386847|ref|YP_003822669.1| GTP-binding protein YchF [Clostridium saccharolyticum WM1]
gi|302197475|gb|ADL05046.1| GTP-binding protein YchF [Clostridium saccharolyticum WM1]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/369 (55%), Positives = 271/369 (73%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL L+ L S
Sbjct: 1 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDVRLGQLAALYDSA 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 60 KITPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDTNVIHVDGNVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSDL+ +++R+ K KG D +S K+ E L++I+ L DGK AR
Sbjct: 120 LRDIETINLELIFSDLEILDRRIAKSTKGAMND-KSLAKELE--ILKRIKVHLEDGKLAR 176
Query: 237 SVTLNDF-ERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
+ + D E++ I L LLT KP+I+ ANV E DLAD G SN +V V A +
Sbjct: 177 GMEIEDGDEKEFISTLNLLTFKPVIFAANVCEDDLADDGISNEYVERVRKFAKENDCEVF 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL +E+ +L LG++ESGL LI ++Y LLGL +Y T+G ET+AWT
Sbjct: 237 VICAQIEQEIAELEEDEKKMFLEDLGLTESGLEKLIAASYHLLGLISYLTAGPTETRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFIRAE V Y D + + +AA++KGL+R EGK+Y+V++G
Sbjct: 297 IKEGTKAPQAAGKIHSDFERGFIRAEVVNYQDLLDCKTYSAAKDKGLVRLEGKEYVVKDG 356
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 357 DVVLFRFNV 365
>gi|379794860|ref|YP_005324858.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|386830035|ref|YP_006236689.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
gi|417799617|ref|ZP_12446753.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21310]
gi|418657098|ref|ZP_13218877.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-105]
gi|334272932|gb|EGL91284.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
21310]
gi|356871850|emb|CCE58189.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
MSHR1132]
gi|375031636|gb|EHS24910.1| GTP-binding protein YchF [Staphylococcus aureus subsp. aureus
IS-105]
gi|385195427|emb|CCG15036.1| putative GTP-binding protein [Staphylococcus aureus subsp. aureus
HO 5096 0412]
Length = 365
Score = 401 bits (1031), Expect = e-109, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 268/370 (72%), Gaps = 6/370 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A AAN+PF TI+PNVGIV VPD RL L + +
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-ALAANYPFATIDPNVGIVEVPDARLLKLEEMVQ 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K +P + EF DIAG+VKGAS+GEGLGNKFLSHIREVD+I QVVR F+D+++ HV G+V
Sbjct: 60 PKKTLPTTFEFTDIAGIVKGASKGEGLGNKFLSHIREVDAICQVVRAFDDDNVTHVAGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKK-GKAKDSQSKLKDAEKAALEKIQQALMDGK 233
DP D++VIN+ELV +DL+ +EKR+ +++K + KD +++ E L I++AL +GK
Sbjct: 120 DPIDDIEVINMELVLADLESVEKRLPRIEKLARQKDKTAEM---EVRILNTIKEALENGK 176
Query: 234 PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293
PARS+ N+ ++ + Q LLT K ++Y+ANV E ++ D N V + A+ S
Sbjct: 177 PARSIDFNEEDQKWVNQAQLLTSKKMLYIANVGEDEIGDD-DNDKVKAIREYAAQEDSEV 235
Query: 294 VTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAW 353
+ ISA++E E+ L E++ +L LG+ E GL LIR+TY LLGL TYFT+G +E +AW
Sbjct: 236 IVISAKIEEEIATLDDEDKEMFLEDLGIEEPGLDRLIRTTYELLGLSTYFTAGVQEVRAW 295
Query: 354 TIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQE 413
T + GMTAPQ AG+IH+DFE+GFIRAE +YDD+V G + A+E G R EGK+YI+Q+
Sbjct: 296 TFKQGMTAPQCAGIIHTDFERGFIRAEVTSYDDYVQYGGESGAKEAGRQRLEGKEYIMQD 355
Query: 414 GDVMLFRFNV 423
GD++ FRFNV
Sbjct: 356 GDIVHFRFNV 365
>gi|289436045|ref|YP_003465917.1| GTP-binding protein YchF [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|422420385|ref|ZP_16497340.1| GTP-binding protein YchF [Listeria seeligeri FSL N1-067]
gi|422423522|ref|ZP_16500475.1| GTP-binding protein YchF [Listeria seeligeri FSL S4-171]
gi|289172289|emb|CBH28835.1| GTP-binding protein YchF [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|313631466|gb|EFR98777.1| GTP-binding protein YchF [Listeria seeligeri FSL N1-067]
gi|313635832|gb|EFS01823.1| GTP-binding protein YchF [Listeria seeligeri FSL S4-171]
Length = 366
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/372 (55%), Positives = 270/372 (72%), Gaps = 9/372 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVGIV VPD RL+ L+ L K
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGIVEVPDHRLNKLTELVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+K VP + EF DIAG+VKGAS+GEGLGNKFLSHIR+VD+I V RCF+D +I HV G+V
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICHVTRCFDDENITHVEGRV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRM---EKLKKGKAKDSQSKLKDAEKAALEKIQQALMD 231
DP D+ INLEL+ +DL+ +EKR+ EKL K K KD+ AE L K++ A +
Sbjct: 120 DPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAV-----AEFNVLVKLRDAFEN 174
Query: 232 GKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS 291
KPAR+V ++ E ++ L LLT KP++YVANV+E D++ P N +V +V A+ S
Sbjct: 175 DKPARAVEFSEDEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDDNKYVQQVREFAAGENS 234
Query: 292 GRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETK 351
+ + A+ E E+ EL E++VE+L +LG+ ESGL LIRS Y+LLGL TYFT+G +E +
Sbjct: 235 EVIVVCARAEEEIAELEDEDKVEFLEALGIEESGLDQLIRSAYTLLGLATYFTAGVQEVR 294
Query: 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIV 411
AWT GM APQ AG+IH+DFE+GFIRAE VAYD + GS AA+E G +R EGK+Y +
Sbjct: 295 AWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYGSEQAAKEAGKVRLEGKEYEM 354
Query: 412 QEGDVMLFRFNV 423
++GDV+ FRFNV
Sbjct: 355 KDGDVVHFRFNV 366
>gi|451817909|ref|YP_007454110.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
gi|451783888|gb|AGF54856.1| GTP-dependent nucleic acid-binding protein EngD [Clostridium
saccharoperbutylacetonicum N1-4(HMT)]
Length = 365
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 197/369 (53%), Positives = 268/369 (72%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ G+VGLPNVGKSTLFNA+ + G A++AN+PFCTIEPNVG+V+VPD RL VL + ++
Sbjct: 1 MKLGMVGLPNVGKSTLFNAITKAG-AESANYPFCTIEPNVGVVSVPDKRLDVLEKMYNTK 59
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K V ++EF DIAGLVKGAS+GEGLGNKFLSHIREV +I+ VVRCF+D ++VHV G VDP
Sbjct: 60 KKVYTAIEFYDIAGLVKGASKGEGLGNKFLSHIREVAAIVHVVRCFDDGNVVHVEGSVDP 119
Query: 177 KSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPA 235
D++ INLEL+FSDL+ +E+RMEK +K ++ D +K E +E+I++ L KP
Sbjct: 120 IRDIETINLELIFSDLEVLERRMEKSIKLARSGDKTAKF---EYGVMERIKEHLEASKPV 176
Query: 236 RSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
R++ ++D E D IK L L+T KP++Y N++E D+ + N +V +V A+ S +
Sbjct: 177 RTLEVSDEEEDFIKGLFLITSKPVLYACNISEDDVMEGNFDNDYVKKVKEYAASENSEVM 236
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
+SA++E EL+ L EE+ E L G+ ESGL LI ++Y LLGL ++ T+G +E +AWT
Sbjct: 237 VVSAKIEEELSGLEDEEKAEMLGEYGLDESGLDKLIEASYKLLGLMSFLTAGVQEVRAWT 296
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G AP AAG IHSD E+GFIRAE V Y+D V GS AAA+EKG R EGKDYI+++G
Sbjct: 297 IKRGTKAPAAAGKIHSDIERGFIRAEVVGYEDLVECGSEAAAKEKGKFRLEGKDYIMKDG 356
Query: 415 DVMLFRFNV 423
DV+ FRFNV
Sbjct: 357 DVVNFRFNV 365
>gi|407780095|ref|ZP_11127342.1| GTP-binding protein YchF [Nitratireductor pacificus pht-3B]
gi|407298093|gb|EKF17238.1| GTP-binding protein YchF [Nitratireductor pacificus pht-3B]
Length = 367
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 202/375 (53%), Positives = 265/375 (70%), Gaps = 16/375 (4%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M + GIVGLPNVGKSTLFNA+ + AQAAN+PFCTIEPN G VAVPDPRL +S ++K
Sbjct: 1 MGFKCGIVGLPNVGKSTLFNALTKTAAAQAANYPFCTIEPNTGEVAVPDPRLKKISAITK 60
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
S++ +P + FVDIAGLV+GAS+GEGLGN+FL++IREVD+I+ V+RCFED+DI HV G++
Sbjct: 61 SKEIIPTRISFVDIAGLVRGASKGEGLGNQFLANIREVDAIVHVLRCFEDDDITHVEGRI 120
Query: 175 DPKSDVDVINLELVFSDLDQIEKR---MEKLKKGKAKDSQSKLKDAEKA-ALEKIQQALM 230
DP +D + + EL+ +DL+ +E+R M+K GK K++ + L E+A AL L
Sbjct: 121 DPVADAETVETELMLADLESLERRTTQMQKRASGKDKEAMTLLPMMEQALAL------LQ 174
Query: 231 DGKPARSVTLNDFERDSIK---QLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
DGKP R + L+ + +K L LLT KP++YV NVAE+D A+ N H V +A
Sbjct: 175 DGKPVR-LLLDGIAAEDLKILRGLNLLTSKPVLYVCNVAEADAAE--GNAHSQAVATMAD 231
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA +EAE+ +L E EYL ++G+ E GL LIR+ Y LL L T+FTSG
Sbjct: 232 GQGALSVVISAAIEAEVAQLSDAEAAEYLEAMGLEEPGLDRLIRAGYELLDLITFFTSGP 291
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KET+AWT+ G APQAAGVIH+DFE+GFIRA+T+ Y DFVA G AARE G R EGK
Sbjct: 292 KETRAWTVHKGAKAPQAAGVIHTDFERGFIRAQTIGYQDFVALGGETAAREAGKARDEGK 351
Query: 408 DYIVQEGDVMLFRFN 422
+Y+V +GDVMLF+FN
Sbjct: 352 EYVVTDGDVMLFKFN 366
>gi|419798586|ref|ZP_14323988.1| GTP-binding protein YchF [Neisseria sicca VK64]
gi|385694265|gb|EIG24877.1| GTP-binding protein YchF [Neisseria sicca VK64]
Length = 363
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/371 (54%), Positives = 269/371 (72%), Gaps = 10/371 (2%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
MSL+ GIVGLPNVGKSTLFNA+ ++G +AAN+PFCTIEPNVGIV VPDPR+ L+ +
Sbjct: 1 MSLKCGIVGLPNVGKSTLFNALTQSG-IEAANYPFCTIEPNVGIVEVPDPRMAELAKIVN 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
QK PA VEFVDIAGLV GAS+GEGLGN+FL++IRE D+I+ VVRCF+D++IVHV+GKV
Sbjct: 60 PQKMQPAIVEFVDIAGLVAGASKGEGLGNQFLANIRETDAIVNVVRCFDDDNIVHVSGKV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAA--LEKIQQALMDG 232
DP +D++ I EL +DL +EK + + + K ++S KDA+K +K+ L +G
Sbjct: 120 DPIADIETIGTELALADLASVEKAIVR----EEKRARSGDKDAQKLVELCKKLLPHLDEG 175
Query: 233 KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292
KP RS L+ E +K L LLT KP +YV NVAE + NPH++ + LA +
Sbjct: 176 KPVRSFGLDAEELAMLKPLFLLTAKPAMYVGNVAEDGFEN---NPHLDRLKELAGKENAP 232
Query: 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKA 352
V + A +E+E+ EL +E+ E+LA +G+ E GL LIR+ Y LLGL+TYFT+G KE +A
Sbjct: 233 VVAVCAAMESEIAELEDDEKAEFLAEMGLEEPGLNRLIRAGYDLLGLQTYFTAGVKEVRA 292
Query: 353 WTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQ 412
WTI G TAPQAAGVIH+DFE+GFIRA+ ++YDDFV+ G A A+E G +R EGK+Y+VQ
Sbjct: 293 WTIHKGDTAPQAAGVIHTDFERGFIRAQVISYDDFVSLGGEAKAKEAGKMRVEGKEYVVQ 352
Query: 413 EGDVMLFRFNV 423
+GDVM F FNV
Sbjct: 353 DGDVMHFLFNV 363
>gi|189500923|ref|YP_001960393.1| GTP-dependent nucleic acid-binding protein EngD [Chlorobium
phaeobacteroides BS1]
gi|189496364|gb|ACE04912.1| GTP-binding protein YchF [Chlorobium phaeobacteroides BS1]
Length = 363
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/369 (55%), Positives = 266/369 (72%), Gaps = 6/369 (1%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+LR GIVGLPNVGKSTLFNA+ +A+A N+PFCTIEPNVG+V VPD RL L+ + K
Sbjct: 1 MALRCGIVGLPNVGKSTLFNAITAK-QAEAENYPFCTIEPNVGMVLVPDERLQKLADIVK 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKV 174
+Q +PA++E VDIAGLV+GAS+GEGLGN+FLSHIREVD+I+ VVRCF+D D++HV+G V
Sbjct: 60 TQTIIPATIELVDIAGLVRGASKGEGLGNQFLSHIREVDTIVHVVRCFDDPDVIHVHGVV 119
Query: 175 DPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKP 234
+P D+ I EL+ +DLD +EKR+EKLKK K+ + L A A EKI L G P
Sbjct: 120 NPADDIATIETELMLADLDSMEKRLEKLKKNARKEKE--LLPA-VALAEKIISGLGQGIP 176
Query: 235 ARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294
AR + + E+ KQ LL+ KP++Y ANV+++DL P N +V +A +
Sbjct: 177 ARVLMETEEEKSLGKQFFLLSAKPVLYAANVSDNDL--PDGNSFTAQVAEIAEKEGEKML 234
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I A+ EAE+ ELP EER E+L SLG+ SGL +I++ Y LLGL TYFT+GEKE +AWT
Sbjct: 235 IICAKTEAEIAELPEEERPEFLESLGLEMSGLDRIIQTAYDLLGLHTYFTAGEKEVRAWT 294
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
IR G AP+AA IH+DFEKGFIRAE +AY D + GS A+E G +RSEGK+YIV++G
Sbjct: 295 IRKGAAAPEAAAAIHTDFEKGFIRAEVIAYTDMITCGSEQKAKEAGKMRSEGKEYIVKDG 354
Query: 415 DVMLFRFNV 423
DV++FRFNV
Sbjct: 355 DVIVFRFNV 363
>gi|323486705|ref|ZP_08092026.1| hypothetical protein HMPREF9474_03777 [Clostridium symbiosum
WAL-14163]
gi|323692156|ref|ZP_08106399.1| GTP-binding protein YchF [Clostridium symbiosum WAL-14673]
gi|323400086|gb|EGA92463.1| hypothetical protein HMPREF9474_03777 [Clostridium symbiosum
WAL-14163]
gi|323503730|gb|EGB19549.1| GTP-binding protein YchF [Clostridium symbiosum WAL-14673]
Length = 376
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/369 (55%), Positives = 269/369 (72%), Gaps = 6/369 (1%)
Query: 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116
++ GIVGLPNVGKSTLFN++ + G A++AN+PFCTI+PNVG+V VPD RL LS L S+
Sbjct: 12 MKLGIVGLPNVGKSTLFNSLTKAG-AESANYPFCTIDPNVGVVPVPDYRLGKLSALYNSE 70
Query: 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDP 176
K PA +EFVDIAGLVKGAS+GEGLGN+FLS+IREVD+I+ VVRCFED +++HV+G VDP
Sbjct: 71 KITPAVIEFVDIAGLVKGASKGEGLGNQFLSNIREVDAIVHVVRCFEDPNVIHVDGSVDP 130
Query: 177 KSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPAR 236
D++ INLEL+FSD++ +E+R+ K K + K E L+ + L DGK A+
Sbjct: 131 LRDIETINLELIFSDMEILERRIAKTNKSLMGN---KALAKELDILKALYAHLEDGKLAK 187
Query: 237 SV-TLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDLQSGRV 294
S T ++ E I L LLT KP+I+ ANV E DL+D G SN +V V N AS+ S
Sbjct: 188 SFETEDEDELAFINSLNLLTWKPVIFAANVCEEDLSDDGASNEYVARVRNFASETGSEVF 247
Query: 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWT 354
I AQ+E E+ EL EE+ +L LG++ESGL LI ++Y LLGL +Y T+G +ET+AWT
Sbjct: 248 VICAQIEQEIAELDEEEKKMFLEDLGLTESGLEKLIAASYRLLGLISYLTAGPQETRAWT 307
Query: 355 IRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414
I+ G APQAAG IHSDFE+GFI+AE V Y D + G+ AA+EKGL+R EGK+YIV++G
Sbjct: 308 IKVGTKAPQAAGKIHSDFERGFIKAEVVNYQDLLDCGTYPAAKEKGLVRMEGKEYIVKDG 367
Query: 415 DVMLFRFNV 423
DV+LFRFNV
Sbjct: 368 DVILFRFNV 376
>gi|449954059|ref|ZP_21809204.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 4VF1]
gi|450137887|ref|ZP_21871882.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML1]
gi|449171230|gb|EMB73903.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans 4VF1]
gi|449234668|gb|EMC33664.1| GTP-dependent nucleic acid-binding protein EngD [Streptococcus
mutans NLML1]
Length = 371
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 204/376 (54%), Positives = 270/376 (71%), Gaps = 12/376 (3%)
Query: 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114
M+L AGIVGLPNVGKSTLFNA+ + G A+AAN+PF TI+PNVG+V VPD RL L+ L
Sbjct: 1 MALTAGIVGLPNVGKSTLFNAITKAG-AEAANYPFATIDPNVGMVEVPDIRLQKLTELIV 59
Query: 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGK- 173
+K VP + EF DIAG+VKGAS+GEGLGNKFL++IREVD+I+ VVR F D +++ G+
Sbjct: 60 PKKTVPTTFEFTDIAGIVKGASRGEGLGNKFLANIREVDAIVHVVRAFNDENVMREQGRE 119
Query: 174 ---VDPKSDVDVINLELVFSDLDQIEK---RMEKLKKGKAKDSQSKLKDAEKAALEKIQQ 227
VDP +D++ INLEL+ +DL+ I K R+EK+ A+ + K AE L+KI+
Sbjct: 120 SDFVDPIADIETINLELILADLESINKCYARVEKI----ARTQKDKDSVAEFNILQKIKP 175
Query: 228 ALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287
L DGK AR++ + E +K L LLT KP++YVANV E +ADP S +V ++ A+
Sbjct: 176 VLEDGKSARTIDFTEDEAKIVKGLFLLTTKPVLYVANVDEDKVADPDSIDYVQQIREFAA 235
Query: 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGE 347
+ V ISA+ E E++EL E+R E+L ++G++ESG+ L R+ Y LLGL TYFT+GE
Sbjct: 236 TENAEVVVISARAEEEISELDDEDRAEFLEAMGLNESGVDKLTRAAYHLLGLGTYFTAGE 295
Query: 348 KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407
KE +AWT + G+ APQAAG+IHSDFEKGFIRA T++YDD + GS A +E G LR EGK
Sbjct: 296 KEVRAWTFKRGIKAPQAAGIIHSDFEKGFIRAVTMSYDDLIKYGSEKAVKEAGRLREEGK 355
Query: 408 DYIVQEGDVMLFRFNV 423
DYIVQ+GD+M FRFNV
Sbjct: 356 DYIVQDGDIMEFRFNV 371
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.316 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,190,715,993
Number of Sequences: 23463169
Number of extensions: 257117949
Number of successful extensions: 1004290
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 7093
Number of HSP's successfully gapped in prelim test: 4986
Number of HSP's that attempted gapping in prelim test: 973527
Number of HSP's gapped (non-prelim): 12884
length of query: 423
length of database: 8,064,228,071
effective HSP length: 145
effective length of query: 278
effective length of database: 8,957,035,862
effective search space: 2490055969636
effective search space used: 2490055969636
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 78 (34.7 bits)