Query 014539
Match_columns 423
No_of_seqs 360 out of 3483
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 06:08:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014539.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014539hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK09601 GTP-binding protein Y 100.0 8.7E-96 2E-100 727.7 35.1 364 55-423 1-364 (364)
2 PTZ00258 GTP-binding protein; 100.0 6.9E-94 1.5E-98 721.6 34.9 369 53-423 18-388 (390)
3 TIGR00092 GTP-binding protein 100.0 2.1E-93 4.5E-98 710.7 31.9 363 55-423 1-368 (368)
4 COG0012 Predicted GTPase, prob 100.0 7.4E-93 1.6E-97 696.3 26.5 366 55-423 1-372 (372)
5 KOG1491 Predicted GTP-binding 100.0 4.9E-89 1.1E-93 654.4 27.8 369 52-423 16-391 (391)
6 PRK09602 translation-associate 100.0 1.3E-63 2.9E-68 506.7 29.4 337 57-421 2-394 (396)
7 cd01900 YchF YchF subfamily. 100.0 4.6E-56 9.9E-61 430.1 23.1 274 59-337 1-274 (274)
8 COG1163 DRG Predicted GTPase [ 100.0 9E-47 1.9E-51 361.7 13.7 288 56-420 63-363 (365)
9 PF06071 YchF-GTPase_C: Protei 100.0 9.4E-43 2E-47 272.7 6.4 84 339-422 1-84 (84)
10 cd04867 TGS_YchF_C TGS_YchF_C: 100.0 7E-42 1.5E-46 265.9 7.0 83 339-421 1-83 (83)
11 cd01899 Ygr210 Ygr210 subfamil 100.0 4.9E-37 1.1E-41 303.9 18.6 240 59-307 1-259 (318)
12 KOG1486 GTP-binding protein DR 100.0 4.1E-36 8.8E-41 278.5 10.8 289 56-420 62-362 (364)
13 KOG1487 GTP-binding protein DR 100.0 3E-31 6.4E-36 247.1 5.8 285 57-420 60-356 (358)
14 COG1159 Era GTPase [General fu 100.0 8.2E-29 1.8E-33 237.2 11.8 192 56-272 6-221 (298)
15 COG2262 HflX GTPases [General 99.9 7.7E-26 1.7E-30 224.5 10.7 139 2-164 119-284 (411)
16 PRK12296 obgE GTPase CgtA; Rev 99.9 1.2E-24 2.5E-29 225.7 15.3 173 56-307 159-331 (500)
17 COG0536 Obg Predicted GTPase [ 99.9 7.2E-25 1.6E-29 212.6 11.9 107 57-187 160-266 (369)
18 KOG1489 Predicted GTP-binding 99.9 3.3E-25 7.1E-30 212.5 8.4 161 57-306 197-357 (366)
19 PRK12297 obgE GTPase CgtA; Rev 99.9 9.6E-24 2.1E-28 216.1 17.4 90 57-163 159-248 (424)
20 TIGR00436 era GTP-binding prot 99.9 1.9E-23 4.1E-28 203.3 12.8 185 58-272 2-213 (270)
21 cd01896 DRG The developmentall 99.9 2.6E-23 5.5E-28 198.2 11.4 223 58-345 2-233 (233)
22 PRK12299 obgE GTPase CgtA; Rev 99.9 8.7E-23 1.9E-27 204.0 15.5 90 57-163 159-248 (335)
23 PRK12298 obgE GTPase CgtA; Rev 99.9 2.7E-22 5.8E-27 204.2 15.7 89 57-162 160-248 (390)
24 PRK11058 GTPase HflX; Provisio 99.9 5.1E-22 1.1E-26 204.3 16.6 138 2-163 124-288 (426)
25 TIGR02729 Obg_CgtA Obg family 99.9 9.6E-22 2.1E-26 196.2 15.4 90 57-163 158-247 (329)
26 PRK15494 era GTPase Era; Provi 99.9 7.2E-22 1.6E-26 198.1 14.0 186 56-272 52-265 (339)
27 TIGR03156 GTP_HflX GTP-binding 99.9 2.2E-21 4.7E-26 195.3 16.6 139 2-163 116-280 (351)
28 COG1160 Predicted GTPases [Gen 99.9 5.1E-21 1.1E-25 192.9 15.8 89 57-162 4-94 (444)
29 PF02421 FeoB_N: Ferrous iron 99.9 2.7E-21 5.9E-26 172.3 10.6 87 57-162 1-89 (156)
30 COG0486 ThdF Predicted GTPase 99.8 1.1E-20 2.5E-25 190.8 14.9 105 42-163 203-308 (454)
31 cd04938 TGS_Obg-like TGS_Obg-l 99.8 2.8E-21 6.2E-26 151.6 6.8 65 339-421 1-76 (76)
32 PRK00089 era GTPase Era; Revie 99.8 2.4E-20 5.1E-25 183.3 12.5 188 56-272 5-220 (292)
33 KOG1423 Ras-like GTPase ERA [C 99.8 2.3E-20 5E-25 178.4 10.1 201 54-273 70-321 (379)
34 cd01898 Obg Obg subfamily. Th 99.8 4.6E-18 1E-22 152.2 16.8 89 58-163 2-90 (170)
35 cd01881 Obg_like The Obg-like 99.7 1.4E-17 3E-22 149.6 12.9 86 61-164 1-87 (176)
36 COG1160 Predicted GTPases [Gen 99.7 9E-17 1.9E-21 162.3 16.9 92 55-163 177-272 (444)
37 PRK05291 trmE tRNA modificatio 99.7 1E-16 2.3E-21 166.5 15.8 98 49-163 208-306 (449)
38 COG1084 Predicted GTPase [Gene 99.7 3.3E-16 7.2E-21 151.9 13.7 91 55-163 167-259 (346)
39 PF01926 MMR_HSR1: 50S ribosom 99.7 1.3E-16 2.9E-21 135.0 9.4 88 58-162 1-90 (116)
40 cd01897 NOG NOG1 is a nucleola 99.7 2.5E-15 5.5E-20 134.3 16.4 89 57-163 1-91 (168)
41 TIGR00450 mnmE_trmE_thdF tRNA 99.7 1.1E-15 2.5E-20 158.2 15.6 97 50-163 197-294 (442)
42 COG0370 FeoB Fe2+ transport sy 99.7 8.8E-16 1.9E-20 161.5 14.5 87 57-162 4-92 (653)
43 TIGR03594 GTPase_EngA ribosome 99.6 2.6E-15 5.6E-20 155.2 16.3 88 58-162 1-89 (429)
44 cd01878 HflX HflX subfamily. 99.6 3.3E-15 7.1E-20 138.7 15.4 94 53-163 38-132 (204)
45 cd01666 TGS_DRG_C TGS_DRG_C: 99.6 1.9E-16 4.2E-21 123.6 5.8 70 339-420 1-74 (75)
46 cd01868 Rab11_like Rab11-like. 99.6 3.8E-15 8.3E-20 132.9 13.9 83 57-162 4-86 (165)
47 cd01861 Rab6 Rab6 subfamily. 99.6 1.2E-14 2.5E-19 129.0 16.0 83 57-162 1-83 (161)
48 cd04142 RRP22 RRP22 subfamily. 99.6 7.4E-15 1.6E-19 136.5 15.3 91 57-163 1-92 (198)
49 KOG0410 Predicted GTP binding 99.6 4.2E-16 9.1E-21 150.3 7.0 99 49-166 171-272 (410)
50 KOG1191 Mitochondrial GTPase [ 99.6 8.4E-16 1.8E-20 155.4 9.3 98 47-161 259-358 (531)
51 cd04171 SelB SelB subfamily. 99.6 4.1E-15 8.9E-20 131.8 12.2 83 57-162 1-85 (164)
52 PRK03003 GTP-binding protein D 99.6 8.7E-15 1.9E-19 153.3 16.4 90 57-163 39-129 (472)
53 PRK03003 GTP-binding protein D 99.6 8.1E-15 1.8E-19 153.5 15.6 92 55-163 210-305 (472)
54 TIGR03594 GTPase_EngA ribosome 99.6 9.9E-15 2.1E-19 150.8 14.2 91 55-162 171-265 (429)
55 PRK09518 bifunctional cytidyla 99.6 1.8E-14 3.9E-19 157.8 16.8 90 56-162 275-365 (712)
56 PRK00093 GTP-binding protein D 99.6 9.9E-15 2.1E-19 151.2 13.7 90 57-163 2-92 (435)
57 cd04109 Rab28 Rab28 subfamily. 99.6 1.2E-14 2.7E-19 136.5 13.0 85 57-163 1-85 (215)
58 cd04164 trmE TrmE (MnmE, ThdF, 99.6 4.5E-14 9.8E-19 123.8 15.7 91 56-163 1-92 (157)
59 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.6 1.3E-14 2.8E-19 129.7 12.4 84 57-163 3-86 (166)
60 cd04145 M_R_Ras_like M-Ras/R-R 99.6 7.8E-14 1.7E-18 123.8 17.2 83 57-163 3-85 (164)
61 PRK09554 feoB ferrous iron tra 99.6 9.7E-15 2.1E-19 160.1 13.7 89 56-162 3-96 (772)
62 cd01867 Rab8_Rab10_Rab13_like 99.6 3.5E-14 7.6E-19 127.4 14.6 153 56-306 3-155 (167)
63 cd04122 Rab14 Rab14 subfamily. 99.6 3.7E-14 8.1E-19 127.0 14.6 151 57-306 3-154 (166)
64 cd01669 TGS_Ygr210_C TGS_Ygr21 99.6 2.8E-15 6E-20 117.6 6.2 54 350-420 22-75 (76)
65 cd04119 RJL RJL (RabJ-Like) su 99.6 9.9E-14 2.1E-18 123.2 16.9 84 57-163 1-84 (168)
66 cd01866 Rab2 Rab2 subfamily. 99.6 4.3E-14 9.4E-19 127.0 14.7 83 57-162 5-87 (168)
67 cd01895 EngA2 EngA2 subfamily. 99.6 5.1E-14 1.1E-18 125.2 14.4 91 56-163 2-96 (174)
68 cd01879 FeoB Ferrous iron tran 99.6 1.7E-14 3.6E-19 127.2 11.0 83 61-162 1-85 (158)
69 cd04138 H_N_K_Ras_like H-Ras/N 99.6 5.2E-14 1.1E-18 124.2 14.0 82 57-162 2-83 (162)
70 PRK00093 GTP-binding protein D 99.6 2.7E-14 5.9E-19 147.9 14.1 92 55-163 172-267 (435)
71 cd01865 Rab3 Rab3 subfamily. 99.6 3.9E-14 8.5E-19 126.8 13.1 83 57-162 2-84 (165)
72 cd04175 Rap1 Rap1 subgroup. T 99.6 1.4E-13 3E-18 122.8 16.3 82 57-162 2-83 (164)
73 cd01894 EngA1 EngA1 subfamily. 99.6 7.5E-14 1.6E-18 122.6 14.4 86 60-162 1-87 (157)
74 cd04107 Rab32_Rab38 Rab38/Rab3 99.6 1.4E-13 3.1E-18 127.7 16.8 156 57-306 1-158 (201)
75 cd04136 Rap_like Rap-like subf 99.6 4.9E-14 1.1E-18 125.0 13.0 83 57-163 2-84 (163)
76 PRK09518 bifunctional cytidyla 99.6 7.6E-14 1.7E-18 152.9 17.0 91 56-163 450-544 (712)
77 cd04112 Rab26 Rab26 subfamily. 99.5 6.1E-14 1.3E-18 129.1 13.5 83 57-162 1-84 (191)
78 cd01863 Rab18 Rab18 subfamily. 99.5 2.5E-13 5.4E-18 120.5 15.9 83 57-162 1-83 (161)
79 cd01862 Rab7 Rab7 subfamily. 99.5 3E-13 6.5E-18 121.0 16.5 83 57-162 1-83 (172)
80 smart00175 RAB Rab subfamily o 99.5 2.7E-13 5.9E-18 120.2 15.8 83 57-162 1-83 (164)
81 TIGR03598 GTPase_YsxC ribosome 99.5 5.3E-14 1.1E-18 128.2 11.0 89 54-162 16-111 (179)
82 smart00173 RAS Ras subfamily o 99.5 3E-13 6.6E-18 120.3 15.7 82 57-162 1-82 (164)
83 cd04144 Ras2 Ras2 subfamily. 99.5 2.4E-13 5.3E-18 125.0 15.5 82 58-163 1-82 (190)
84 cd04106 Rab23_lke Rab23-like s 99.5 1.4E-13 3.1E-18 122.0 12.9 83 57-162 1-85 (162)
85 PLN03118 Rab family protein; P 99.5 3.7E-13 8E-18 125.9 16.3 85 55-163 13-97 (211)
86 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.2E-13 2.6E-18 123.3 12.3 81 58-162 1-84 (167)
87 cd04176 Rap2 Rap2 subgroup. T 99.5 5.1E-13 1.1E-17 118.9 16.1 83 57-163 2-84 (163)
88 cd04127 Rab27A Rab27a subfamil 99.5 2.7E-13 5.8E-18 122.8 14.4 164 56-306 4-167 (180)
89 cd04163 Era Era subfamily. Er 99.5 2.1E-13 4.5E-18 120.0 12.7 91 56-163 3-94 (168)
90 cd04113 Rab4 Rab4 subfamily. 99.5 2.2E-13 4.8E-18 121.0 12.8 152 57-306 1-152 (161)
91 cd04120 Rab12 Rab12 subfamily. 99.5 2.9E-13 6.2E-18 126.4 14.1 84 57-163 1-84 (202)
92 cd04140 ARHI_like ARHI subfami 99.5 4.5E-13 9.7E-18 120.0 14.4 83 57-163 2-84 (165)
93 cd04111 Rab39 Rab39 subfamily. 99.5 4E-13 8.6E-18 126.1 14.6 85 57-163 3-87 (211)
94 cd01864 Rab19 Rab19 subfamily. 99.5 8.3E-13 1.8E-17 118.0 15.7 85 56-163 3-87 (165)
95 cd04123 Rab21 Rab21 subfamily. 99.5 1.1E-12 2.4E-17 115.8 16.2 84 57-163 1-84 (162)
96 PLN03108 Rab family protein; P 99.5 5.4E-13 1.2E-17 125.0 15.0 153 56-306 6-158 (210)
97 PRK04213 GTP-binding protein; 99.5 3.7E-13 8E-18 124.5 13.2 86 55-162 8-101 (201)
98 cd04116 Rab9 Rab9 subfamily. 99.5 4.9E-13 1.1E-17 120.0 13.4 85 56-163 5-89 (170)
99 cd04117 Rab15 Rab15 subfamily. 99.5 3.4E-13 7.3E-18 120.6 12.2 84 57-163 1-84 (161)
100 cd04166 CysN_ATPS CysN_ATPS su 99.5 2.9E-13 6.2E-18 126.7 12.1 82 58-163 1-112 (208)
101 cd00154 Rab Rab family. Rab G 99.5 5E-13 1.1E-17 116.7 13.0 84 57-163 1-84 (159)
102 cd04110 Rab35 Rab35 subfamily. 99.5 4.5E-13 9.9E-18 124.2 13.1 86 55-163 5-90 (199)
103 cd04125 RabA_like RabA-like su 99.5 5.9E-13 1.3E-17 122.0 13.7 83 57-162 1-83 (188)
104 cd01852 AIG1 AIG1 (avrRpt2-ind 99.5 5.8E-13 1.3E-17 123.3 13.7 90 57-163 1-95 (196)
105 TIGR00437 feoB ferrous iron tr 99.5 1.7E-13 3.6E-18 146.9 11.3 81 63-162 1-83 (591)
106 KOG0092 GTPase Rab5/YPT51 and 99.5 3.1E-13 6.8E-18 122.0 10.8 153 56-306 5-157 (200)
107 cd01891 TypA_BipA TypA (tyrosi 99.5 1.4E-12 3.1E-17 120.3 15.6 83 57-163 3-100 (194)
108 cd04158 ARD1 ARD1 subfamily. 99.5 5.8E-13 1.2E-17 120.0 12.6 78 58-163 1-78 (169)
109 PLN03110 Rab GTPase; Provision 99.5 9.7E-13 2.1E-17 123.8 14.5 85 55-162 11-95 (216)
110 PTZ00369 Ras-like protein; Pro 99.5 8.5E-13 1.8E-17 121.3 13.6 84 56-163 5-88 (189)
111 cd04124 RabL2 RabL2 subfamily. 99.5 1.1E-12 2.3E-17 117.3 13.8 83 57-162 1-83 (161)
112 cd01860 Rab5_related Rab5-rela 99.5 2.3E-12 5E-17 114.4 15.9 83 57-162 2-84 (163)
113 cd04139 RalA_RalB RalA/RalB su 99.5 2E-12 4.4E-17 114.4 15.5 82 57-162 1-82 (164)
114 cd04101 RabL4 RabL4 (Rab-like4 99.5 2.6E-12 5.6E-17 114.3 16.2 85 57-162 1-86 (164)
115 cd04121 Rab40 Rab40 subfamily. 99.5 9.4E-13 2E-17 121.6 13.2 152 55-306 5-157 (189)
116 cd04146 RERG_RasL11_like RERG/ 99.4 1.2E-12 2.6E-17 117.0 13.3 83 58-163 1-83 (165)
117 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.7E-12 3.6E-17 117.5 14.1 83 58-163 2-84 (170)
118 cd00876 Ras Ras family. The R 99.4 1.2E-12 2.7E-17 115.1 13.0 81 58-162 1-81 (160)
119 cd04154 Arl2 Arl2 subfamily. 99.4 1.4E-12 3E-17 117.8 13.3 81 55-163 13-93 (173)
120 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 2.7E-12 5.9E-17 117.4 15.1 85 56-163 3-87 (183)
121 cd04148 RGK RGK subfamily. Th 99.4 3.6E-12 7.9E-17 120.4 16.0 82 57-163 1-84 (221)
122 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 1.8E-12 3.9E-17 117.4 13.3 80 56-163 15-94 (174)
123 cd04115 Rab33B_Rab33A Rab33B/R 99.4 1.6E-12 3.5E-17 117.0 12.9 85 57-163 3-87 (170)
124 cd04114 Rab30 Rab30 subfamily. 99.4 5.7E-12 1.2E-16 112.6 16.2 84 56-162 7-90 (169)
125 cd04143 Rhes_like Rhes_like su 99.4 6.7E-12 1.5E-16 120.7 17.6 83 57-163 1-83 (247)
126 cd01887 IF2_eIF5B IF2/eIF5B (i 99.4 1.4E-12 3E-17 116.2 11.8 85 57-163 1-85 (168)
127 PRK00454 engB GTP-binding prot 99.4 2.1E-12 4.5E-17 118.5 13.0 88 55-162 23-117 (196)
128 cd04177 RSR1 RSR1 subgroup. R 99.4 2.2E-12 4.9E-17 115.8 12.9 83 57-163 2-84 (168)
129 cd04126 Rab20 Rab20 subfamily. 99.4 3.4E-12 7.4E-17 120.7 14.5 79 57-163 1-79 (220)
130 cd04118 Rab24 Rab24 subfamily. 99.4 2.3E-12 5E-17 118.3 13.1 83 57-162 1-84 (193)
131 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.7E-12 3.7E-17 117.6 11.9 151 57-305 3-153 (172)
132 cd01889 SelB_euk SelB subfamil 99.4 1.6E-12 3.4E-17 119.8 11.5 97 57-163 1-103 (192)
133 cd00879 Sar1 Sar1 subfamily. 99.4 7.3E-12 1.6E-16 114.6 15.8 79 56-162 19-97 (190)
134 cd04150 Arf1_5_like Arf1-Arf5- 99.4 3.1E-12 6.7E-17 114.3 13.0 79 57-163 1-79 (159)
135 cd04156 ARLTS1 ARLTS1 subfamil 99.4 1.3E-12 2.7E-17 115.8 10.3 79 58-163 1-79 (160)
136 cd04151 Arl1 Arl1 subfamily. 99.4 3.5E-12 7.6E-17 113.2 13.2 78 58-163 1-78 (158)
137 cd00877 Ran Ran (Ras-related n 99.4 3.6E-12 7.8E-17 114.7 13.3 84 57-163 1-84 (166)
138 cd00881 GTP_translation_factor 99.4 1.9E-12 4.2E-17 117.2 11.6 82 58-163 1-97 (189)
139 cd04149 Arf6 Arf6 subfamily. 99.4 3.5E-12 7.6E-17 115.1 13.1 80 56-163 9-88 (168)
140 cd01892 Miro2 Miro2 subfamily. 99.4 7.1E-12 1.5E-16 113.1 15.0 85 55-162 3-88 (169)
141 TIGR02528 EutP ethanolamine ut 99.4 1.1E-12 2.4E-17 114.3 9.3 74 58-164 2-75 (142)
142 cd04128 Spg1 Spg1p. Spg1p (se 99.4 3.8E-12 8.3E-17 116.6 13.4 84 57-163 1-84 (182)
143 cd04157 Arl6 Arl6 subfamily. 99.4 1.5E-12 3.2E-17 115.4 10.3 80 58-163 1-80 (162)
144 smart00178 SAR Sar1p-like memb 99.4 4E-12 8.6E-17 116.5 13.2 80 56-163 17-96 (184)
145 cd04137 RheB Rheb (Ras Homolog 99.4 9.2E-12 2E-16 112.8 15.4 82 57-162 2-83 (180)
146 cd04147 Ras_dva Ras-dva subfam 99.4 1.1E-11 2.3E-16 114.9 15.9 82 58-163 1-82 (198)
147 KOG0084 GTPase Rab1/YPT1, smal 99.4 3E-12 6.6E-17 116.0 11.7 153 54-304 7-160 (205)
148 COG0218 Predicted GTPase [Gene 99.4 2.9E-12 6.3E-17 117.4 11.7 88 55-162 23-117 (200)
149 cd00878 Arf_Arl Arf (ADP-ribos 99.4 3.9E-12 8.4E-17 112.6 11.7 78 58-163 1-78 (158)
150 PRK15467 ethanolamine utilizat 99.4 2.8E-12 6E-17 114.9 10.7 74 58-163 3-76 (158)
151 cd04162 Arl9_Arfrp2_like Arl9/ 99.4 6.3E-12 1.4E-16 113.0 13.0 79 58-163 1-79 (164)
152 cd01874 Cdc42 Cdc42 subfamily. 99.4 6.6E-12 1.4E-16 114.2 13.1 83 57-163 2-84 (175)
153 KOG0078 GTP-binding protein SE 99.4 6.4E-12 1.4E-16 115.3 12.7 155 54-306 10-164 (207)
154 cd00157 Rho Rho (Ras homology) 99.4 5.9E-12 1.3E-16 112.5 12.3 82 57-162 1-82 (171)
155 cd01890 LepA LepA subfamily. 99.4 2.9E-12 6.3E-17 115.8 10.2 87 58-163 2-102 (179)
156 KOG1490 GTP-binding protein CR 99.4 1.4E-12 2.9E-17 132.3 8.2 88 56-163 168-259 (620)
157 cd04132 Rho4_like Rho4-like su 99.4 8.1E-12 1.8E-16 114.0 12.5 84 57-163 1-84 (187)
158 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.4 2.7E-12 5.9E-17 116.1 9.1 154 57-307 23-176 (221)
159 PLN00223 ADP-ribosylation fact 99.4 3E-11 6.6E-16 110.5 16.2 80 56-163 17-96 (181)
160 cd00880 Era_like Era (E. coli 99.3 7.9E-12 1.7E-16 108.4 11.6 87 61-163 1-87 (163)
161 PLN03071 GTP-binding nuclear p 99.3 7.7E-12 1.7E-16 118.0 12.2 86 55-163 12-97 (219)
162 smart00174 RHO Rho (Ras homolo 99.3 8.9E-12 1.9E-16 112.0 11.9 80 59-162 1-80 (174)
163 PRK09866 hypothetical protein; 99.3 9.9E-12 2.1E-16 130.9 13.7 36 57-92 70-105 (741)
164 PTZ00133 ADP-ribosylation fact 99.3 4.5E-11 9.7E-16 109.4 16.5 80 56-163 17-96 (182)
165 PRK12317 elongation factor 1-a 99.3 6.8E-12 1.5E-16 129.8 12.2 84 56-163 6-119 (425)
166 KOG0394 Ras-related GTPase [Ge 99.3 6.6E-12 1.4E-16 112.6 10.1 159 54-305 7-167 (210)
167 cd04130 Wrch_1 Wrch-1 subfamil 99.3 1.6E-11 3.5E-16 110.8 12.6 83 57-163 1-83 (173)
168 cd04159 Arl10_like Arl10-like 99.3 2.5E-11 5.4E-16 106.0 13.0 78 58-162 1-78 (159)
169 cd04135 Tc10 TC10 subfamily. 99.3 2.5E-11 5.3E-16 109.2 13.3 82 57-162 1-82 (174)
170 cd04131 Rnd Rnd subfamily. Th 99.3 1.1E-11 2.5E-16 113.1 11.2 83 57-163 2-84 (178)
171 PF00071 Ras: Ras family; Int 99.3 2E-11 4.3E-16 108.4 12.3 150 58-305 1-150 (162)
172 TIGR00231 small_GTP small GTP- 99.3 1.1E-11 2.3E-16 107.5 9.7 82 57-161 2-83 (161)
173 cd04161 Arl2l1_Arl13_like Arl2 99.3 1.9E-11 4.2E-16 110.0 11.6 78 58-163 1-78 (167)
174 cd04133 Rop_like Rop subfamily 99.3 2.4E-11 5.2E-16 110.9 12.2 83 57-163 2-84 (176)
175 smart00177 ARF ARF-like small 99.3 7.9E-11 1.7E-15 106.9 15.6 80 56-163 13-92 (175)
176 cd01871 Rac1_like Rac1-like su 99.3 2.4E-11 5.2E-16 110.4 12.1 83 57-163 2-84 (174)
177 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.3 2.3E-11 5E-16 111.6 12.0 84 56-163 5-88 (182)
178 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.3 3.1E-11 6.6E-16 115.0 12.9 85 55-163 12-96 (232)
179 cd01884 EF_Tu EF-Tu subfamily. 99.3 3.9E-11 8.4E-16 111.4 12.8 82 57-162 3-99 (195)
180 cd01893 Miro1 Miro1 subfamily. 99.3 4.2E-11 9E-16 107.4 12.6 81 58-163 2-82 (166)
181 KOG0098 GTPase Rab2, small G p 99.3 1.1E-10 2.4E-15 105.0 13.7 153 56-306 6-158 (216)
182 cd04155 Arl3 Arl3 subfamily. 99.3 1E-10 2.2E-15 105.1 13.7 80 55-162 13-92 (173)
183 cd01886 EF-G Elongation factor 99.3 1.7E-10 3.8E-15 112.3 16.1 82 58-163 1-99 (270)
184 cd04178 Nucleostemin_like Nucl 99.3 1.1E-11 2.3E-16 112.9 7.1 58 54-131 115-172 (172)
185 cd01875 RhoG RhoG subfamily. 99.2 5.8E-11 1.3E-15 109.5 12.0 83 57-163 4-86 (191)
186 KOG0087 GTPase Rab11/YPT3, sma 99.2 6.1E-11 1.3E-15 108.7 11.1 154 53-304 11-164 (222)
187 cd04103 Centaurin_gamma Centau 99.2 9.7E-11 2.1E-15 104.8 12.1 77 57-163 1-77 (158)
188 cd04134 Rho3 Rho3 subfamily. 99.2 8.9E-11 1.9E-15 107.9 12.1 83 57-163 1-83 (189)
189 cd01870 RhoA_like RhoA-like su 99.2 1.4E-10 3.1E-15 104.3 12.8 82 57-162 2-83 (175)
190 TIGR00475 selB selenocysteine- 99.2 7.6E-11 1.7E-15 126.3 12.3 83 57-163 1-85 (581)
191 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.2 1.7E-10 3.7E-15 109.3 13.2 83 57-163 2-84 (222)
192 cd04104 p47_IIGP_like p47 (47- 99.2 1.4E-10 3.1E-15 107.5 12.4 82 57-160 2-89 (197)
193 PF00025 Arf: ADP-ribosylation 99.2 2.9E-10 6.3E-15 103.5 12.9 82 54-163 12-93 (175)
194 TIGR00487 IF-2 translation ini 99.2 2.2E-10 4.7E-15 122.6 13.9 85 54-162 85-169 (587)
195 KOG0073 GTP-binding ADP-ribosy 99.2 4.6E-10 1E-14 99.0 13.3 80 55-162 15-94 (185)
196 cd01853 Toc34_like Toc34-like 99.2 7.2E-11 1.6E-15 113.6 9.0 94 51-161 26-124 (249)
197 cd01873 RhoBTB RhoBTB subfamil 99.2 2.3E-10 4.9E-15 106.2 11.8 49 256-306 120-186 (195)
198 CHL00189 infB translation init 99.2 4.4E-10 9.4E-15 122.4 15.3 90 53-163 241-330 (742)
199 cd01858 NGP_1 NGP-1. Autoanti 99.2 4.1E-11 9E-16 107.0 5.9 56 56-131 102-157 (157)
200 TIGR02836 spore_IV_A stage IV 99.2 1.3E-09 2.8E-14 110.0 16.8 97 54-162 15-156 (492)
201 cd01876 YihA_EngB The YihA (En 99.1 4E-10 8.6E-15 99.3 11.8 85 58-162 1-92 (170)
202 PF00009 GTP_EFTU: Elongation 99.1 4.4E-10 9.5E-15 103.3 12.4 83 57-163 4-105 (188)
203 TIGR00991 3a0901s02IAP34 GTP-b 99.1 1.6E-10 3.4E-15 113.6 9.5 86 55-161 37-128 (313)
204 COG1161 Predicted GTPases [Gen 99.1 8.1E-11 1.8E-15 117.4 7.4 62 55-136 131-192 (322)
205 cd01883 EF1_alpha Eukaryotic e 99.1 2E-10 4.4E-15 108.3 9.4 81 59-163 2-112 (219)
206 PRK05306 infB translation init 99.1 1.2E-09 2.6E-14 120.0 16.6 85 54-163 288-372 (787)
207 PRK05506 bifunctional sulfate 99.1 4.2E-10 9E-15 122.1 13.0 102 54-162 22-138 (632)
208 CHL00071 tufA elongation facto 99.1 4.4E-10 9.4E-15 115.9 12.4 84 55-162 11-109 (409)
209 COG3596 Predicted GTPase [Gene 99.1 7.9E-11 1.7E-15 112.4 6.2 94 54-164 37-130 (296)
210 smart00176 RAN Ran (Ras-relate 99.1 4.4E-10 9.5E-15 104.8 10.9 77 62-163 1-79 (200)
211 KOG0080 GTPase Rab18, small G 99.1 2.8E-10 6E-15 100.0 8.6 86 56-164 11-96 (209)
212 TIGR00483 EF-1_alpha translati 99.1 6.2E-10 1.4E-14 115.3 12.7 86 55-164 6-121 (426)
213 TIGR00484 EF-G translation elo 99.1 1.4E-09 2.9E-14 119.2 15.9 83 57-163 11-110 (689)
214 PRK10512 selenocysteinyl-tRNA- 99.1 4.1E-10 8.8E-15 121.3 11.2 82 58-162 2-85 (614)
215 cd04168 TetM_like Tet(M)-like 99.1 4.7E-09 1E-13 100.4 17.3 82 58-163 1-99 (237)
216 PRK09563 rbgA GTPase YlqF; Rev 99.1 1.8E-10 4E-15 113.1 7.3 62 55-136 120-181 (287)
217 cd04129 Rho2 Rho2 subfamily. 99.1 1.5E-09 3.2E-14 99.6 12.6 82 57-162 2-83 (187)
218 PRK05124 cysN sulfate adenylyl 99.1 1.2E-09 2.6E-14 114.6 12.9 86 54-163 25-142 (474)
219 cd00882 Ras_like_GTPase Ras-li 99.1 1.3E-09 2.9E-14 92.9 10.8 80 61-163 1-80 (157)
220 PRK12739 elongation factor G; 99.1 3.2E-09 7E-14 116.3 16.3 83 57-163 9-108 (691)
221 cd01849 YlqF_related_GTPase Yl 99.0 3.2E-10 7E-15 101.1 6.7 58 54-131 98-155 (155)
222 cd01888 eIF2_gamma eIF2-gamma 99.0 1.5E-09 3.2E-14 101.2 10.3 36 121-163 83-118 (203)
223 PRK12735 elongation factor Tu; 99.0 2.8E-09 6.1E-14 109.4 13.2 85 54-162 10-109 (396)
224 TIGR03596 GTPase_YlqF ribosome 99.0 4.4E-10 9.5E-15 109.9 6.8 62 55-136 117-178 (276)
225 PRK00007 elongation factor G; 99.0 6E-09 1.3E-13 114.2 16.2 83 57-163 11-110 (693)
226 TIGR02034 CysN sulfate adenyly 99.0 2.3E-09 4.9E-14 110.5 12.0 83 57-163 1-115 (406)
227 KOG1424 Predicted GTP-binding 99.0 2.7E-10 5.9E-15 116.3 5.0 61 56-136 314-374 (562)
228 TIGR00485 EF-Tu translation el 99.0 4.1E-09 8.8E-14 108.2 13.3 85 55-163 11-110 (394)
229 PRK10218 GTP-binding protein; 99.0 7.3E-09 1.6E-13 111.2 15.7 83 57-163 6-103 (607)
230 TIGR00491 aIF-2 translation in 99.0 3.7E-09 8E-14 113.1 13.0 97 56-163 4-104 (590)
231 cd04170 EF-G_bact Elongation f 99.0 1.9E-08 4.1E-13 97.8 16.8 82 58-163 1-99 (268)
232 PTZ00132 GTP-binding nuclear p 99.0 6.7E-09 1.5E-13 97.3 13.2 84 55-163 8-93 (215)
233 PF08477 Miro: Miro-like prote 99.0 2.1E-09 4.7E-14 90.5 8.9 84 58-163 1-85 (119)
234 PRK12736 elongation factor Tu; 99.0 4.8E-09 1E-13 107.7 12.9 86 54-163 10-110 (394)
235 PLN03127 Elongation factor Tu; 99.0 7.9E-09 1.7E-13 107.5 14.7 86 53-162 58-158 (447)
236 cd04105 SR_beta Signal recogni 99.0 8.3E-09 1.8E-13 96.3 13.3 82 58-163 2-84 (203)
237 TIGR01393 lepA GTP-binding pro 99.0 7.5E-09 1.6E-13 111.3 14.7 86 57-163 4-105 (595)
238 PLN00023 GTP-binding protein; 99.0 6.2E-09 1.3E-13 103.1 12.9 98 56-163 21-118 (334)
239 KOG0095 GTPase Rab30, small G 99.0 6.9E-09 1.5E-13 90.2 11.3 88 56-166 7-94 (213)
240 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.1E-09 2.3E-14 96.2 6.4 56 58-133 85-140 (141)
241 cd01855 YqeH YqeH. YqeH is an 99.0 6.3E-10 1.4E-14 102.4 5.0 56 56-131 127-190 (190)
242 KOG0091 GTPase Rab39, small G 99.0 2E-09 4.4E-14 94.9 7.7 155 55-305 7-162 (213)
243 PLN03126 Elongation factor Tu; 98.9 8.9E-09 1.9E-13 107.9 13.7 86 54-163 79-179 (478)
244 KOG0079 GTP-binding protein H- 98.9 3.1E-09 6.7E-14 92.3 8.5 150 57-305 9-158 (198)
245 PF00350 Dynamin_N: Dynamin fa 98.9 1.8E-09 4E-14 96.7 7.4 101 59-163 1-140 (168)
246 TIGR00993 3a0901s04IAP86 chlor 98.9 2.6E-09 5.7E-14 113.1 9.2 93 53-162 115-212 (763)
247 KOG0093 GTPase Rab3, small G p 98.9 1.5E-09 3.2E-14 94.2 5.7 153 56-306 21-173 (193)
248 TIGR01394 TypA_BipA GTP-bindin 98.9 1.8E-08 4E-13 108.1 15.3 82 58-163 3-99 (594)
249 TIGR03680 eif2g_arch translati 98.9 4.5E-09 9.7E-14 108.3 9.8 100 56-163 4-115 (406)
250 KOG0086 GTPase Rab4, small G p 98.9 6E-09 1.3E-13 90.9 8.7 152 55-304 8-159 (214)
251 cd01856 YlqF YlqF. Proteins o 98.9 2.6E-09 5.6E-14 96.8 6.7 58 55-132 114-171 (171)
252 PRK00049 elongation factor Tu; 98.9 1.1E-08 2.4E-13 105.0 12.2 84 55-162 11-109 (396)
253 cd01850 CDC_Septin CDC/Septin. 98.9 1.3E-08 2.7E-13 99.6 11.9 64 56-134 4-76 (276)
254 PF04548 AIG1: AIG1 family; I 98.9 4.3E-09 9.3E-14 98.9 8.0 89 57-162 1-94 (212)
255 PF02824 TGS: TGS domain; Int 98.9 2.2E-09 4.7E-14 80.5 4.5 59 340-420 1-59 (60)
256 PF10662 PduV-EutP: Ethanolami 98.8 2.9E-08 6.2E-13 87.2 10.6 135 57-307 2-137 (143)
257 PF09439 SRPRB: Signal recogni 98.8 3.2E-08 7E-13 90.4 10.5 80 57-162 4-86 (181)
258 PRK04000 translation initiatio 98.8 2.3E-08 4.9E-13 103.2 10.7 102 54-163 7-120 (411)
259 PRK05433 GTP-binding protein L 98.8 7.4E-08 1.6E-12 103.8 14.7 88 57-163 8-109 (600)
260 KOG2423 Nucleolar GTPase [Gene 98.8 2.8E-09 6.1E-14 105.7 3.3 88 29-136 279-367 (572)
261 PRK13796 GTPase YqeH; Provisio 98.8 6.6E-09 1.4E-13 105.5 6.0 59 56-134 160-223 (365)
262 KOG0097 GTPase Rab14, small G 98.8 9.2E-08 2E-12 82.5 11.2 152 55-305 10-162 (215)
263 TIGR03597 GTPase_YqeH ribosome 98.8 8.1E-09 1.8E-13 104.7 5.6 59 56-134 154-217 (360)
264 cd04169 RF3 RF3 subfamily. Pe 98.7 3.6E-08 7.7E-13 96.0 9.2 96 57-163 3-106 (267)
265 KOG2484 GTPase [General functi 98.7 8E-09 1.7E-13 102.9 4.5 71 47-137 243-313 (435)
266 KOG0075 GTP-binding ADP-ribosy 98.7 1E-08 2.2E-13 89.0 4.3 84 55-165 19-102 (186)
267 cd01851 GBP Guanylate-binding 98.7 4E-08 8.8E-13 93.2 8.5 91 57-162 8-102 (224)
268 cd04102 RabL3 RabL3 (Rab-like3 98.7 2.2E-08 4.8E-13 93.5 6.5 90 57-164 1-90 (202)
269 KOG0395 Ras-related GTPase [Ge 98.7 1.7E-07 3.6E-12 87.2 12.2 151 56-304 3-153 (196)
270 KOG0088 GTPase Rab21, small G 98.7 1.5E-08 3.3E-13 88.9 4.4 153 55-307 12-166 (218)
271 PTZ00141 elongation factor 1- 98.7 8.9E-08 1.9E-12 99.8 10.7 85 55-163 6-120 (446)
272 KOG0083 GTPase Rab26/Rab37, sm 98.7 2.4E-08 5.3E-13 85.3 5.2 80 61-163 2-82 (192)
273 smart00053 DYNc Dynamin, GTPas 98.7 6E-07 1.3E-11 85.9 14.7 103 56-162 26-173 (240)
274 cd01859 MJ1464 MJ1464. This f 98.6 4E-08 8.6E-13 87.4 5.9 57 55-131 100-156 (156)
275 cd04165 GTPBP1_like GTPBP1-lik 98.6 3.6E-07 7.9E-12 86.7 11.4 21 58-78 1-21 (224)
276 PRK12289 GTPase RsgA; Reviewed 98.6 4.7E-08 1E-12 98.6 5.0 85 58-163 174-269 (352)
277 cd04167 Snu114p Snu114p subfam 98.6 1.3E-07 2.7E-12 88.8 7.1 87 58-163 2-106 (213)
278 PRK12288 GTPase RsgA; Reviewed 98.6 5.6E-08 1.2E-12 98.0 4.7 82 58-163 207-301 (347)
279 COG2229 Predicted GTPase [Gene 98.5 1E-06 2.2E-11 79.7 11.7 86 56-164 10-104 (187)
280 COG1100 GTPase SAR1 and relate 98.5 2.3E-07 5.1E-12 86.5 8.0 83 57-162 6-88 (219)
281 TIGR00157 ribosome small subun 98.5 1.2E-07 2.6E-12 91.1 5.3 58 57-135 121-185 (245)
282 PLN00043 elongation factor 1-a 98.5 6.7E-07 1.5E-11 93.2 10.8 84 56-163 7-120 (447)
283 KOG2485 Conserved ATP/GTP bind 98.5 2.1E-07 4.5E-12 90.5 6.3 68 53-137 140-212 (335)
284 cd01885 EF2 EF2 (for archaea a 98.5 4.5E-07 9.7E-12 85.9 8.3 92 58-163 2-108 (222)
285 PF05049 IIGP: Interferon-indu 98.4 1.7E-07 3.8E-12 94.6 4.5 86 54-161 33-124 (376)
286 cd01882 BMS1 Bms1. Bms1 is an 98.4 8.4E-07 1.8E-11 84.2 8.8 79 54-163 37-115 (225)
287 PRK04004 translation initiatio 98.4 6E-07 1.3E-11 96.5 8.1 97 56-163 6-106 (586)
288 KOG0090 Signal recognition par 98.4 2.7E-06 5.9E-11 78.6 10.5 78 57-162 39-119 (238)
289 KOG0076 GTP-binding ADP-ribosy 98.4 1.3E-06 2.7E-11 78.3 7.9 85 56-164 17-105 (197)
290 TIGR00503 prfC peptide chain r 98.4 1.2E-06 2.5E-11 93.2 9.0 84 56-163 11-115 (527)
291 PTZ00327 eukaryotic translatio 98.4 1.4E-06 3E-11 91.0 9.3 101 55-162 33-151 (460)
292 PRK00741 prfC peptide chain re 98.3 1.3E-06 2.8E-11 92.8 8.9 84 56-163 10-114 (526)
293 KOG0070 GTP-binding ADP-ribosy 98.3 5.7E-07 1.2E-11 81.3 5.2 81 55-163 16-96 (181)
294 PF04670 Gtr1_RagA: Gtr1/RagA 98.3 1.5E-06 3.3E-11 82.7 7.8 87 58-162 1-87 (232)
295 PRK00098 GTPase RsgA; Reviewed 98.3 6E-07 1.3E-11 88.8 4.9 58 56-133 164-228 (298)
296 PRK13351 elongation factor G; 98.3 2E-06 4.4E-11 94.5 9.3 85 56-164 8-109 (687)
297 PF03193 DUF258: Protein of un 98.3 5.8E-07 1.3E-11 80.6 3.6 57 57-133 36-99 (161)
298 KOG0081 GTPase Rab27, small G 98.3 2.8E-06 6.1E-11 74.9 7.4 160 57-304 10-169 (219)
299 PTZ00099 rab6; Provisional 98.3 1.6E-05 3.4E-10 72.6 12.7 47 256-305 85-131 (176)
300 PRK13768 GTPase; Provisional 98.2 2.9E-06 6.3E-11 82.0 7.9 42 121-163 97-140 (253)
301 COG5256 TEF1 Translation elong 98.2 6E-06 1.3E-10 83.3 10.2 85 56-165 7-122 (428)
302 PF00735 Septin: Septin; Inte 98.2 6.8E-06 1.5E-10 80.6 10.2 26 56-81 4-29 (281)
303 TIGR00490 aEF-2 translation el 98.2 2.8E-06 6.1E-11 93.7 6.8 86 56-163 19-121 (720)
304 cd01854 YjeQ_engC YjeQ/EngC. 98.1 2.4E-06 5.1E-11 84.1 4.5 58 57-134 162-226 (287)
305 KOG3883 Ras family small GTPas 98.1 4.8E-05 1E-09 66.9 11.8 92 51-162 4-95 (198)
306 COG5019 CDC3 Septin family pro 98.1 5.8E-05 1.3E-09 75.3 13.9 28 52-79 19-46 (373)
307 TIGR00691 spoT_relA (p)ppGpp s 98.1 4.3E-06 9.4E-11 91.3 6.2 63 338-422 360-422 (683)
308 KOG0462 Elongation factor-type 98.1 2.7E-05 5.9E-10 80.8 11.4 148 57-236 61-241 (650)
309 PTZ00416 elongation factor 2; 98.1 1.2E-05 2.7E-10 90.0 9.3 94 57-164 20-128 (836)
310 PRK12740 elongation factor G; 98.1 7.9E-06 1.7E-10 89.6 7.6 79 62-164 1-96 (668)
311 PF08438 MMR_HSR1_C: GTPase of 98.1 4.5E-06 9.7E-11 69.8 4.3 77 262-346 1-108 (109)
312 KOG2655 Septin family protein 98.0 0.00012 2.5E-09 73.5 14.6 33 47-79 12-44 (366)
313 KOG0074 GTP-binding ADP-ribosy 98.0 1.3E-05 2.8E-10 69.5 6.7 82 54-162 15-96 (185)
314 KOG4252 GTP-binding protein [S 98.0 2.9E-06 6.3E-11 76.2 2.7 152 56-306 20-171 (246)
315 KOG1547 Septin CDC10 and relat 98.0 0.00023 5.1E-09 67.2 15.2 67 52-133 42-116 (336)
316 KOG1145 Mitochondrial translat 98.0 0.00021 4.6E-09 74.4 15.7 85 54-162 151-235 (683)
317 COG1162 Predicted GTPases [Gen 98.0 5.3E-06 1.1E-10 81.2 3.9 58 57-134 165-229 (301)
318 PRK09435 membrane ATPase/prote 97.9 2.8E-05 6.1E-10 77.9 8.0 25 54-78 54-78 (332)
319 PLN00116 translation elongatio 97.9 3.8E-05 8.2E-10 86.2 9.9 99 56-164 19-134 (843)
320 PRK10872 relA (p)ppGpp synthet 97.9 1.9E-05 4.1E-10 86.3 7.2 63 338-422 404-466 (743)
321 TIGR00750 lao LAO/AO transport 97.9 9.4E-05 2E-09 73.2 11.6 24 55-78 33-56 (300)
322 PRK07560 elongation factor EF- 97.9 3.3E-05 7.2E-10 85.5 8.2 88 57-164 21-123 (731)
323 KOG0458 Elongation factor 1 al 97.7 0.00015 3.1E-09 76.0 9.7 37 121-164 255-291 (603)
324 COG0532 InfB Translation initi 97.6 0.00058 1.3E-08 71.2 12.2 85 56-162 5-89 (509)
325 KOG0448 Mitofusin 1 GTPase, in 97.6 0.00011 2.5E-09 78.0 7.1 105 52-161 105-242 (749)
326 COG0481 LepA Membrane GTPase L 97.6 0.00015 3.2E-09 74.4 7.5 142 59-231 12-187 (603)
327 KOG1707 Predicted Ras related/ 97.6 0.00012 2.6E-09 76.6 6.7 83 56-163 9-91 (625)
328 KOG0077 Vesicle coat complex C 97.6 0.0001 2.2E-09 65.7 5.1 80 56-163 20-99 (193)
329 KOG0393 Ras-related small GTPa 97.6 4.3E-05 9.2E-10 70.7 2.7 86 56-164 4-89 (198)
330 COG5257 GCD11 Translation init 97.6 0.00078 1.7E-08 66.2 11.3 153 55-231 9-203 (415)
331 COG4917 EutP Ethanolamine util 97.5 0.00035 7.6E-09 59.6 7.4 77 57-165 2-78 (148)
332 KOG1673 Ras GTPases [General f 97.5 0.00042 9.2E-09 61.2 8.2 87 54-163 18-104 (205)
333 PRK01889 GTPase RsgA; Reviewed 97.5 6E-05 1.3E-09 76.5 3.1 30 56-85 195-224 (356)
334 cd03112 CobW_like The function 97.4 0.00012 2.7E-09 65.5 4.0 105 58-162 2-129 (158)
335 PRK14845 translation initiatio 97.4 0.00073 1.6E-08 76.8 10.8 86 67-163 472-561 (1049)
336 KOG0071 GTP-binding ADP-ribosy 97.4 0.00046 1E-08 60.0 7.0 80 56-163 17-96 (180)
337 KOG4423 GTP-binding protein-li 97.3 1.5E-05 3.2E-10 72.2 -3.9 159 54-304 23-182 (229)
338 KOG1532 GTPase XAB1, interacts 97.3 0.00085 1.8E-08 64.6 7.6 25 55-79 18-42 (366)
339 KOG1954 Endocytosis/signaling 97.3 0.0015 3.3E-08 65.2 9.5 104 57-163 59-193 (532)
340 KOG3886 GTP-binding protein [S 97.2 0.00022 4.8E-09 66.9 3.2 86 56-164 4-94 (295)
341 KOG0461 Selenocysteine-specifi 97.2 0.0014 3.1E-08 64.9 8.7 92 56-162 7-104 (522)
342 TIGR01425 SRP54_euk signal rec 97.2 0.0011 2.3E-08 68.7 7.8 22 56-77 100-121 (429)
343 PRK11092 bifunctional (p)ppGpp 97.2 0.00055 1.2E-08 75.1 5.9 63 338-422 386-448 (702)
344 PF05783 DLIC: Dynein light in 97.2 0.016 3.6E-07 60.8 16.6 110 255-391 195-315 (472)
345 COG0317 SpoT Guanosine polypho 97.1 0.0007 1.5E-08 73.4 5.9 63 338-422 387-449 (701)
346 KOG2486 Predicted GTPase [Gene 97.0 0.0017 3.7E-08 62.7 7.3 88 56-163 136-231 (320)
347 KOG0072 GTP-binding ADP-ribosy 97.0 0.0019 4.1E-08 56.5 6.2 83 56-166 18-100 (182)
348 PF03029 ATP_bind_1: Conserved 97.0 0.00027 5.9E-09 67.7 1.2 18 61-78 1-18 (238)
349 PRK14722 flhF flagellar biosyn 96.7 0.0019 4.2E-08 65.7 5.2 23 56-78 137-159 (374)
350 KOG0468 U5 snRNP-specific prot 96.7 0.004 8.8E-08 66.3 7.6 90 57-165 129-234 (971)
351 COG4108 PrfC Peptide chain rel 96.6 0.013 2.7E-07 60.1 10.1 82 58-163 14-116 (528)
352 COG3276 SelB Selenocysteine-sp 96.6 0.012 2.7E-07 60.2 10.1 83 58-164 2-86 (447)
353 TIGR03263 guanyl_kin guanylate 96.6 0.0014 3E-08 59.3 2.9 42 57-98 2-43 (180)
354 cd03114 ArgK-like The function 96.6 0.0051 1.1E-07 54.5 6.4 20 59-78 2-21 (148)
355 COG5192 BMS1 GTP-binding prote 96.6 0.0019 4.1E-08 67.5 3.9 76 56-162 69-144 (1077)
356 COG2895 CysN GTPases - Sulfate 96.5 0.018 4E-07 57.5 10.3 65 254-321 137-215 (431)
357 cd01616 TGS The TGS domain, na 96.5 0.0046 1E-07 44.5 4.7 51 351-420 9-59 (60)
358 PF00448 SRP54: SRP54-type pro 96.5 0.00078 1.7E-08 62.6 0.6 21 58-78 3-23 (196)
359 PRK10463 hydrogenase nickel in 96.5 0.0073 1.6E-07 59.4 7.1 25 54-78 102-126 (290)
360 COG1217 TypA Predicted membran 96.5 0.011 2.4E-07 60.9 8.3 84 58-165 7-105 (603)
361 PRK10416 signal recognition pa 96.4 0.01 2.2E-07 59.3 8.0 23 56-78 114-136 (318)
362 COG0480 FusA Translation elong 96.4 0.0084 1.8E-07 65.7 7.7 83 57-164 11-112 (697)
363 PRK11889 flhF flagellar biosyn 96.4 0.0065 1.4E-07 62.2 6.1 23 56-78 241-263 (436)
364 PRK14721 flhF flagellar biosyn 96.3 0.0078 1.7E-07 62.3 6.7 25 55-79 190-214 (420)
365 COG1116 TauB ABC-type nitrate/ 96.2 0.0045 9.8E-08 59.1 4.1 24 57-80 30-53 (248)
366 cd00071 GMPK Guanosine monopho 96.2 0.0041 9E-08 54.3 3.3 39 59-97 2-41 (137)
367 PRK14974 cell division protein 96.1 0.008 1.7E-07 60.5 5.4 23 56-78 140-162 (336)
368 PRK12726 flagellar biosynthesi 96.1 0.0022 4.8E-08 65.2 1.3 23 56-78 206-228 (407)
369 TIGR00064 ftsY signal recognit 96.1 0.013 2.8E-07 57.3 6.4 23 56-78 72-94 (272)
370 COG0050 TufB GTPases - transla 96.0 0.041 9E-07 53.8 9.5 104 55-183 11-147 (394)
371 PRK14737 gmk guanylate kinase; 96.0 0.0045 9.7E-08 57.0 2.8 43 57-99 5-47 (186)
372 PRK00300 gmk guanylate kinase; 96.0 0.0056 1.2E-07 56.6 3.3 44 55-98 4-47 (205)
373 PRK05703 flhF flagellar biosyn 95.9 0.0073 1.6E-07 62.8 4.2 23 56-78 221-243 (424)
374 COG3840 ThiQ ABC-type thiamine 95.9 0.0053 1.1E-07 56.2 2.7 23 57-79 26-48 (231)
375 KOG3859 Septins (P-loop GTPase 95.8 0.049 1.1E-06 52.8 9.0 29 53-82 39-67 (406)
376 KOG3905 Dynein light intermedi 95.8 0.33 7.2E-06 48.2 14.5 256 52-373 48-326 (473)
377 PF00005 ABC_tran: ABC transpo 95.7 0.0066 1.4E-07 52.2 2.4 25 55-79 10-34 (137)
378 PF13207 AAA_17: AAA domain; P 95.7 0.0072 1.6E-07 50.7 2.5 21 58-78 1-21 (121)
379 PRK14738 gmk guanylate kinase; 95.6 0.009 1.9E-07 55.8 3.2 44 54-97 11-54 (206)
380 cd03115 SRP The signal recogni 95.6 0.025 5.5E-07 50.8 5.9 20 58-77 2-21 (173)
381 PRK12724 flagellar biosynthesi 95.6 0.0064 1.4E-07 62.7 2.0 22 57-78 224-245 (432)
382 KOG1533 Predicted GTPase [Gene 95.5 0.015 3.3E-07 55.0 4.2 21 57-77 3-23 (290)
383 COG0194 Gmk Guanylate kinase [ 95.5 0.0075 1.6E-07 55.2 2.0 44 55-99 3-46 (191)
384 COG1618 Predicted nucleotide k 95.5 0.021 4.6E-07 51.2 4.6 25 54-78 3-27 (179)
385 PRK06731 flhF flagellar biosyn 95.4 0.026 5.6E-07 55.1 5.7 23 56-78 75-97 (270)
386 cd01983 Fer4_NifH The Fer4_Nif 95.4 0.025 5.4E-07 44.6 4.6 68 59-162 2-69 (99)
387 PRK07261 topology modulation p 95.3 0.011 2.4E-07 53.5 2.5 21 57-77 1-21 (171)
388 COG0378 HypB Ni2+-binding GTPa 95.3 0.071 1.5E-06 49.2 7.6 22 57-78 14-35 (202)
389 cd03116 MobB Molybdenum is an 95.3 0.012 2.5E-07 53.0 2.4 21 58-78 3-23 (159)
390 PRK00771 signal recognition pa 95.3 0.051 1.1E-06 56.7 7.5 22 56-77 95-116 (437)
391 PRK12727 flagellar biosynthesi 95.2 0.031 6.6E-07 59.3 5.8 24 55-78 349-372 (559)
392 TIGR03348 VI_IcmF type VI secr 95.2 0.12 2.7E-06 60.4 11.2 91 57-162 112-212 (1169)
393 COG1341 Predicted GTPase or GT 95.2 0.077 1.7E-06 54.1 8.2 25 54-78 71-95 (398)
394 cd01857 HSR1_MMR1 HSR1/MMR1. 95.2 0.089 1.9E-06 45.8 7.8 64 255-334 41-104 (141)
395 COG1136 SalX ABC-type antimicr 95.2 0.011 2.5E-07 55.9 2.1 25 56-80 31-55 (226)
396 PRK14723 flhF flagellar biosyn 95.1 0.044 9.6E-07 60.5 6.7 22 57-78 186-207 (767)
397 cd02042 ParA ParA and ParB of 95.1 0.04 8.6E-07 45.1 5.0 70 59-162 2-72 (104)
398 PRK10078 ribose 1,5-bisphospho 95.1 0.015 3.3E-07 53.2 2.6 24 55-78 1-24 (186)
399 TIGR03499 FlhF flagellar biosy 95.0 0.0099 2.1E-07 58.4 1.3 23 56-78 194-216 (282)
400 PRK12723 flagellar biosynthesi 95.0 0.051 1.1E-06 55.8 6.5 23 56-78 174-196 (388)
401 cd02019 NK Nucleoside/nucleoti 95.0 0.016 3.6E-07 44.2 2.2 19 59-77 2-20 (69)
402 PF13521 AAA_28: AAA domain; P 95.0 0.011 2.4E-07 52.8 1.3 22 58-79 1-22 (163)
403 COG0411 LivG ABC-type branched 94.9 0.0073 1.6E-07 57.5 0.0 24 56-79 30-53 (250)
404 PF03308 ArgK: ArgK protein; 94.9 0.019 4.2E-07 55.3 2.8 24 55-78 28-51 (266)
405 cd03225 ABC_cobalt_CbiO_domain 94.8 0.018 3.9E-07 53.5 2.4 25 55-79 26-50 (211)
406 cd03261 ABC_Org_Solvent_Resist 94.8 0.018 3.9E-07 54.5 2.4 25 55-79 25-49 (235)
407 cd03264 ABC_drug_resistance_li 94.7 0.017 3.8E-07 53.7 2.2 23 56-79 26-48 (211)
408 PRK14530 adenylate kinase; Pro 94.7 0.021 4.5E-07 53.6 2.6 24 55-78 2-25 (215)
409 TIGR03608 L_ocin_972_ABC putat 94.7 0.019 4.1E-07 53.1 2.4 25 55-79 23-47 (206)
410 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.7 0.019 4.2E-07 53.6 2.4 25 55-79 29-53 (218)
411 cd03221 ABCF_EF-3 ABCF_EF-3 E 94.7 0.018 3.9E-07 50.6 2.0 25 55-79 25-49 (144)
412 PF02263 GBP: Guanylate-bindin 94.7 0.079 1.7E-06 51.4 6.7 64 57-133 22-86 (260)
413 COG0563 Adk Adenylate kinase a 94.7 0.022 4.7E-07 52.2 2.5 21 57-77 1-21 (178)
414 cd03265 ABC_DrrA DrrA is the A 94.7 0.02 4.3E-07 53.7 2.4 25 55-79 25-49 (220)
415 PF13555 AAA_29: P-loop contai 94.7 0.022 4.8E-07 42.8 2.1 20 58-77 25-44 (62)
416 COG1134 TagH ABC-type polysacc 94.7 0.02 4.4E-07 54.5 2.4 24 55-78 52-75 (249)
417 TIGR01166 cbiO cobalt transpor 94.7 0.019 4.1E-07 52.6 2.1 24 56-79 18-41 (190)
418 TIGR00960 3a0501s02 Type II (G 94.6 0.023 4.9E-07 53.1 2.7 25 55-79 28-52 (216)
419 TIGR02673 FtsE cell division A 94.6 0.02 4.4E-07 53.3 2.3 25 55-79 27-51 (214)
420 PRK10867 signal recognition pa 94.6 0.1 2.2E-06 54.4 7.6 22 56-77 100-121 (433)
421 TIGR00073 hypB hydrogenase acc 94.6 0.029 6.2E-07 52.3 3.3 24 55-78 21-44 (207)
422 cd03263 ABC_subfamily_A The AB 94.5 0.02 4.4E-07 53.5 2.1 24 56-79 28-51 (220)
423 cd03222 ABC_RNaseL_inhibitor T 94.5 0.024 5.1E-07 51.9 2.5 26 54-79 23-48 (177)
424 TIGR00101 ureG urease accessor 94.5 0.024 5.2E-07 52.7 2.5 22 57-78 2-23 (199)
425 PRK13541 cytochrome c biogenes 94.5 0.026 5.6E-07 52.0 2.7 25 55-79 25-49 (195)
426 cd03262 ABC_HisP_GlnQ_permease 94.5 0.023 5.1E-07 52.8 2.4 25 55-79 25-49 (213)
427 PF13238 AAA_18: AAA domain; P 94.5 0.024 5.3E-07 47.6 2.2 19 59-77 1-19 (129)
428 cd03218 ABC_YhbG The ABC trans 94.5 0.023 5.1E-07 53.6 2.4 25 55-79 25-49 (232)
429 cd03292 ABC_FtsE_transporter F 94.5 0.024 5.2E-07 52.8 2.4 25 55-79 26-50 (214)
430 PF13671 AAA_33: AAA domain; P 94.4 0.024 5.3E-07 48.8 2.2 20 59-78 2-21 (143)
431 TIGR00235 udk uridine kinase. 94.4 0.026 5.5E-07 52.6 2.5 23 56-78 6-28 (207)
432 cd03259 ABC_Carb_Solutes_like 94.4 0.024 5.3E-07 52.8 2.4 25 55-79 25-49 (213)
433 cd03226 ABC_cobalt_CbiO_domain 94.4 0.024 5.3E-07 52.5 2.3 25 55-79 25-49 (205)
434 cd03269 ABC_putative_ATPase Th 94.4 0.025 5.4E-07 52.6 2.4 25 55-79 25-49 (210)
435 cd01668 TGS_RelA_SpoT TGS_RelA 94.4 0.11 2.4E-06 37.9 5.4 49 352-419 10-58 (60)
436 PRK13540 cytochrome c biogenes 94.4 0.025 5.4E-07 52.3 2.4 25 55-79 26-50 (200)
437 cd02023 UMPK Uridine monophosp 94.4 0.023 5.1E-07 52.3 2.2 20 59-78 2-21 (198)
438 cd03224 ABC_TM1139_LivF_branch 94.4 0.024 5.2E-07 53.0 2.3 25 55-79 25-49 (222)
439 cd03231 ABC_CcmA_heme_exporter 94.4 0.025 5.4E-07 52.4 2.4 25 55-79 25-49 (201)
440 TIGR02315 ABC_phnC phosphonate 94.4 0.025 5.4E-07 53.8 2.3 25 55-79 27-51 (243)
441 cd01130 VirB11-like_ATPase Typ 94.4 0.028 6.1E-07 51.5 2.6 23 56-78 25-47 (186)
442 cd03293 ABC_NrtD_SsuB_transpor 94.4 0.025 5.5E-07 53.0 2.4 25 55-79 29-53 (220)
443 cd03260 ABC_PstB_phosphate_tra 94.4 0.029 6.2E-07 52.8 2.7 25 55-79 25-49 (227)
444 PRK14242 phosphate transporter 94.4 0.025 5.5E-07 54.2 2.4 25 55-79 31-55 (253)
445 PRK13543 cytochrome c biogenes 94.3 0.026 5.6E-07 52.8 2.3 25 55-79 36-60 (214)
446 cd03257 ABC_NikE_OppD_transpor 94.3 0.026 5.5E-07 53.0 2.3 25 55-79 30-54 (228)
447 cd03229 ABC_Class3 This class 94.3 0.027 5.9E-07 51.1 2.4 25 55-79 25-49 (178)
448 PRK03839 putative kinase; Prov 94.3 0.028 6E-07 51.0 2.4 21 57-77 1-21 (180)
449 cd03266 ABC_NatA_sodium_export 94.3 0.027 5.8E-07 52.6 2.3 25 55-79 30-54 (218)
450 TIGR01189 ccmA heme ABC export 94.3 0.028 6E-07 51.9 2.4 25 55-79 25-49 (198)
451 COG1419 FlhF Flagellar GTP-bin 94.3 0.039 8.4E-07 56.4 3.6 44 56-106 203-246 (407)
452 cd03258 ABC_MetN_methionine_tr 94.3 0.027 5.8E-07 53.2 2.4 25 55-79 30-54 (233)
453 cd03216 ABC_Carb_Monos_I This 94.3 0.032 6.9E-07 50.0 2.7 25 55-79 25-49 (163)
454 cd03215 ABC_Carb_Monos_II This 94.3 0.028 6E-07 51.2 2.3 26 55-80 25-50 (182)
455 PRK08118 topology modulation p 94.3 0.03 6.5E-07 50.6 2.5 21 57-77 2-22 (167)
456 TIGR02322 phosphon_PhnN phosph 94.3 0.03 6.5E-07 50.6 2.5 21 58-78 3-23 (179)
457 cd03254 ABCC_Glucan_exporter_l 94.2 0.028 6.1E-07 52.9 2.4 24 56-79 29-52 (229)
458 PRK05480 uridine/cytidine kina 94.2 0.032 7E-07 51.9 2.7 24 55-78 5-28 (209)
459 cd03235 ABC_Metallic_Cations A 94.2 0.027 5.8E-07 52.5 2.2 25 55-79 24-48 (213)
460 TIGR02211 LolD_lipo_ex lipopro 94.2 0.032 6.9E-07 52.2 2.7 25 55-79 30-54 (221)
461 cd03256 ABC_PhnC_transporter A 94.2 0.026 5.7E-07 53.5 2.1 25 55-79 26-50 (241)
462 cd01859 MJ1464 MJ1464. This f 94.2 0.38 8.3E-06 42.3 9.5 48 255-307 40-87 (156)
463 PRK10584 putative ABC transpor 94.2 0.027 5.9E-07 53.0 2.2 25 55-79 35-59 (228)
464 PRK15177 Vi polysaccharide exp 94.2 0.028 6E-07 52.7 2.2 24 56-79 13-36 (213)
465 PRK14262 phosphate ABC transpo 94.2 0.029 6.2E-07 53.7 2.4 24 56-79 29-52 (250)
466 PRK10751 molybdopterin-guanine 94.2 0.031 6.6E-07 51.0 2.4 22 57-78 7-28 (173)
467 KOG1707 Predicted Ras related/ 94.2 0.17 3.8E-06 53.6 8.1 88 51-163 420-507 (625)
468 PRK10908 cell division protein 94.2 0.03 6.4E-07 52.6 2.4 25 55-79 27-51 (222)
469 PRK11124 artP arginine transpo 94.2 0.029 6.3E-07 53.4 2.4 25 55-79 27-51 (242)
470 PRK14247 phosphate ABC transpo 94.2 0.029 6.3E-07 53.7 2.3 25 55-79 28-52 (250)
471 PRK11264 putative amino-acid A 94.2 0.033 7.2E-07 53.2 2.7 25 55-79 28-52 (250)
472 PRK14269 phosphate ABC transpo 94.2 0.029 6.4E-07 53.6 2.4 25 55-79 27-51 (246)
473 cd03268 ABC_BcrA_bacitracin_re 94.1 0.028 6.1E-07 52.1 2.1 25 55-79 25-49 (208)
474 PRK11629 lolD lipoprotein tran 94.1 0.03 6.5E-07 53.0 2.4 25 55-79 34-58 (233)
475 cd03296 ABC_CysA_sulfate_impor 94.1 0.03 6.6E-07 53.2 2.3 24 56-79 28-51 (239)
476 KOG0054 Multidrug resistance-a 94.1 0.026 5.7E-07 65.8 2.2 23 55-77 1165-1187(1381)
477 PRK14239 phosphate transporter 94.1 0.03 6.6E-07 53.5 2.3 25 55-79 30-54 (252)
478 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.031 6.7E-07 51.7 2.3 25 55-79 25-49 (200)
479 cd03236 ABC_RNaseL_inhibitor_d 94.1 0.031 6.7E-07 54.1 2.4 26 55-80 25-50 (255)
480 PRK14241 phosphate transporter 94.1 0.031 6.6E-07 53.9 2.4 25 55-79 29-53 (258)
481 TIGR01978 sufC FeS assembly AT 94.1 0.035 7.7E-07 52.7 2.8 25 55-79 25-49 (243)
482 cd03301 ABC_MalK_N The N-termi 94.1 0.036 7.8E-07 51.6 2.7 25 55-79 25-49 (213)
483 cd03233 ABC_PDR_domain1 The pl 94.1 0.03 6.5E-07 51.9 2.2 25 55-79 32-56 (202)
484 cd03247 ABCC_cytochrome_bd The 94.1 0.033 7.1E-07 50.5 2.4 25 55-79 27-51 (178)
485 cd03219 ABC_Mj1267_LivG_branch 94.1 0.03 6.6E-07 52.9 2.2 25 55-79 25-49 (236)
486 TIGR03410 urea_trans_UrtE urea 94.1 0.031 6.8E-07 52.7 2.3 25 55-79 25-49 (230)
487 COG0488 Uup ATPase components 94.1 0.044 9.5E-07 58.5 3.6 27 54-80 27-53 (530)
488 PRK14274 phosphate ABC transpo 94.1 0.032 6.9E-07 53.7 2.4 25 55-79 37-61 (259)
489 cd03230 ABC_DR_subfamily_A Thi 94.0 0.034 7.3E-07 50.2 2.4 25 55-79 25-49 (173)
490 cd03249 ABC_MTABC3_MDL1_MDL2 M 94.0 0.031 6.7E-07 53.0 2.2 25 55-79 28-52 (238)
491 cd03110 Fer4_NifH_child This p 94.0 1.7 3.7E-05 39.1 13.6 34 120-162 92-125 (179)
492 PF03205 MobB: Molybdopterin g 94.0 0.036 7.9E-07 48.6 2.5 22 57-78 1-22 (140)
493 PRK13695 putative NTPase; Prov 94.0 0.035 7.6E-07 50.1 2.4 22 57-78 1-22 (174)
494 PRK13539 cytochrome c biogenes 94.0 0.033 7.2E-07 51.8 2.4 25 55-79 27-51 (207)
495 PRK10895 lipopolysaccharide AB 94.0 0.033 7.1E-07 53.0 2.4 25 55-79 28-52 (241)
496 PRK14267 phosphate ABC transpo 94.0 0.03 6.5E-07 53.7 2.1 24 56-79 30-53 (253)
497 KOG4181 Uncharacterized conser 94.0 0.052 1.1E-06 54.1 3.7 23 57-79 189-211 (491)
498 TIGR03864 PQQ_ABC_ATP ABC tran 94.0 0.033 7.2E-07 52.8 2.4 25 55-79 26-50 (236)
499 PRK10575 iron-hydroxamate tran 94.0 0.032 6.9E-07 54.0 2.2 25 55-79 36-60 (265)
500 PRK13651 cobalt transporter AT 94.0 0.032 7E-07 55.4 2.3 24 56-79 33-56 (305)
No 1
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=100.00 E-value=8.7e-96 Score=727.71 Aligned_cols=364 Identities=61% Similarity=0.982 Sum_probs=344.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
|+++|||||+||||||||||+||+. .+.++++||||++|+.|++.++++|++.|+++++|++.+|+++.|+||||++++
T Consensus 1 m~~~vgIVG~PNvGKSTLfnaLt~~-~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~ 79 (364)
T PRK09601 1 MGLKCGIVGLPNVGKSTLFNALTKA-GAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKG 79 (364)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC-CCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCC
Confidence 4589999999999999999999954 489999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
++.+++++++|++++++||+++||||+|.++++.|+.+.+||++|+++++.||.++|++.++++++++.+..+... +.
T Consensus 80 a~~g~glg~~fL~~i~~aD~li~VVd~f~d~~~~~~~~~~dP~~d~~~i~~EL~~~d~~~~ek~~~k~~k~~~~~~--~~ 157 (364)
T PRK09601 80 ASKGEGLGNQFLANIREVDAIVHVVRCFEDDNITHVEGKVDPIRDIETINTELILADLETVEKRLERLEKKAKGGD--KE 157 (364)
T ss_pred CChHHHHHHHHHHHHHhCCEEEEEEeCCccCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhccc--hh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987654432 23
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
...+..+++++.++|+++.+++..+||++|.+.|++++++|.||++|++|+++.|+.. .+.+.+++.+|+.+.+.+++
T Consensus 158 ~~~e~~~l~~v~~~Le~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~~~~~--~~~~~~~i~~~~~~~~~~~i 235 (364)
T PRK09601 158 AKAELELLEKLLEHLEEGKPARTLELTDEEEKLLKSLQLLTAKPVLYVANVDEDDLAD--GNPYVKKVREIAAKEGAEVV 235 (364)
T ss_pred HHHHHHHHHHHHHHHHcCCCcccCCCCHHHHHHHHHhcccccCCeEEEEECCcccccc--ccHHHHHHHHHHHHcCCeEE
Confidence 3567788999999999999999889999999999999999999999999999887753 36789999999988888899
Q ss_pred EechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhh
Q 014539 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEK 374 (423)
Q Consensus 295 ~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~ 374 (423)
++||+.|.+|.+|++|++++||++||+.+||++++|+.+|++||||+|||+|++|+|||+|++||||+||||+|||||+|
T Consensus 236 ~~sa~~E~el~~l~~ee~~~fl~~~g~~~s~~~~ii~~~~~~L~li~fftvg~~evrawti~~GstA~~aAg~IHsD~~k 315 (364)
T PRK09601 236 VICAKIEAEIAELDDEEKAEFLEELGLEESGLDRLIRAGYELLGLITYFTAGPKEVRAWTIKKGTTAPQAAGVIHTDFEK 315 (364)
T ss_pred EEEHHHHHHHHcCCHHHHHHHHHHcCCcchhHHHHHHHHHHHhCCEEEecCCCCeEEEEEeCCCCchHHHhhcchhhHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 375 GFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 375 ~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
||||||||+|+||++|||+++||++||+|++||||+|||||||+||||+
T Consensus 316 gFI~AeVi~~~d~~~~g~~~~ak~~gk~rleGkdY~v~DGDIi~f~fn~ 364 (364)
T PRK09601 316 GFIRAEVISYDDLIEYGSEAGAKEAGKVRLEGKDYIVQDGDVMHFRFNV 364 (364)
T ss_pred ccEEEEEecHHHHHHcCCHHHHHHccceeccCCceEecCCCEEEEEcCC
Confidence 9999999999999999999999999999999999999999999999997
No 2
>PTZ00258 GTP-binding protein; Provisional
Probab=100.00 E-value=6.9e-94 Score=721.58 Aligned_cols=369 Identities=48% Similarity=0.802 Sum_probs=343.9
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|||||+||||||||||+|| +..+.++++||||++|+.|++.+++.|++.|+.+++|++.+++++.|+||||++
T Consensus 18 ~~~~~kvgIVG~PNvGKSTLfnaLt-~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv 96 (390)
T PTZ00258 18 PGNNLKMGIVGLPNVGKSTTFNALC-KQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV 96 (390)
T ss_pred CCCCcEEEEECCCCCChHHHHHHHh-cCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence 3566899999999999999999999 566899999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
++++.+++++++|++++++||+++||||+|++++++|+.+.+||++|++.++.||.++|++.++++++++.+..+.....
T Consensus 97 ~ga~~g~gLg~~fL~~Ir~aD~il~VVd~f~d~~v~h~~~~~dp~~d~~~i~~EL~~~d~~~~ek~~~~~~k~~~~~~~~ 176 (390)
T PTZ00258 97 KGASEGEGLGNAFLSHIRAVDGIYHVVRAFEDEDITHVEGEIDPVRDLEIISSELILKDLEFVEKRLDELTKKRKKKKKK 176 (390)
T ss_pred cCCcchhHHHHHHHHHHHHCCEEEEEEeCCCCCCccccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987763221111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhc-CC
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL-QS 291 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~-~~ 291 (423)
+.......+++++.+.|+++.+++..+||++|.+++++++++|.||++|++|+++.|+... .+++.+++++++.+. +.
T Consensus 177 ~~~~~~~~~l~~v~~~L~~~~~~~~~~~~~~e~~~l~~l~llt~KP~iyv~N~~E~D~~~~-~~~~~~~l~~~~~~~~~~ 255 (390)
T PTZ00258 177 KEEKVELDVLKKVLEWLEEGKPVRDGDWTDKEIEILNEYQLLTAKPMIYLVNMSEKDFIRQ-KNKWLAKIKEWVGEKGGG 255 (390)
T ss_pred hhHHHHHHHHHHHHHHHHcCCccccCCCCHHHHHHHHHhchhhcCCEEEEEECchhhhccc-chHHHHHHHHHHHhcCCC
Confidence 3334567889999999999999998899999999999999999999999999998776222 367889999988776 47
Q ss_pred cEEEechhhhHhhcCC-ChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhcch
Q 014539 292 GRVTISAQVEAELTEL-PSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHS 370 (423)
Q Consensus 292 ~~v~~Sa~~e~~i~~l-~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~IHs 370 (423)
+++++||+.|.+|.+| +++++.+||++||+.+||++++++.+|++||||+|||+||+|+|||++++||||+||||+|||
T Consensus 256 ~~v~~sa~~E~el~~l~~~~e~~~fl~~~g~~~~gl~~li~~~~~lL~li~ffT~g~~e~raw~i~~Gsta~~aAg~IHs 335 (390)
T PTZ00258 256 PIIPYSAEFEEELAELGSEEERKEYLEEYGIKQSMLDKIIKTGYKLLNLIHFFTAGPDEVRCWTIQKGTKAPQAAGVIHS 335 (390)
T ss_pred eEEEeeHHHHHHHHhcCCHHHHHHHHHHcCCCcccHHHHHHHHHHHhCCEEEEcCCCCceeEEEeCCCCcHHHHHhhhhh
Confidence 8999999999999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 371 DFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 371 D~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 336 D~~kgFi~Aev~~~~d~~~~g~~~~ak~~g~~r~eGkdYiv~DGDIi~f~fnv 388 (390)
T PTZ00258 336 DFEKGFICAEVMKYEDFLELGSEAAVKAEGKYRQEGKDYVVQDGDIIFFKFNV 388 (390)
T ss_pred HHhhCcEEEEECcHHHHHHcCCHHHHHhcCceeeeCCceEecCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999997
No 3
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=100.00 E-value=2.1e-93 Score=710.72 Aligned_cols=363 Identities=51% Similarity=0.738 Sum_probs=338.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc-eecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~-~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
|++++||||+||+|||||||+|| +..+ .+++|||||++|+.|++.++|+|+++|+.+++|++.+|+++.++|+||+++
T Consensus 1 m~lk~GivGlPn~GKSTlfnaLT-~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~ 79 (368)
T TIGR00092 1 MGLSGGIVGLPNVGKSTLFAATT-NLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVG 79 (368)
T ss_pred CCceEEEECCCCCChHHHHHHHh-CCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEecccccc
Confidence 45899999999999999999999 4455 899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
+++++.|+|++|++++|+||+++||||+|++++++|+.+.+||++|+.+++.||.++|++.++++++++.+..++. +
T Consensus 80 gAs~g~Glgn~fL~~ir~~d~l~hVvr~f~d~~i~H~~~~~dp~~d~~~i~~EL~l~d~~~~ek~l~r~~k~~k~~---k 156 (368)
T TIGR00092 80 GASKGEGLGNQFLANIREVDIIQHVVRCFEDDIIHHVGNVDDPRDDFEIIDEELLKADEFLVEKRIGRSKKSAEGG---K 156 (368)
T ss_pred chhcccCcchHHHHHHHhCCEEEEEEeCCCCcccCccCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcc---h
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988765432 2
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhh---cC
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD---LQ 290 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~---~~ 290 (423)
....+..+++++.++|++++|++...|+++|..+++.++++|.||++|++|++++++.+. .+.+.+.++ |+.+ .+
T Consensus 157 ~~~~e~~ll~~~~~~Le~~~~~r~~~~~~ee~~~~~~~~llt~Kp~~~v~N~~e~~~~~~-n~~~~~~~~-~~~~~~~~~ 234 (368)
T TIGR00092 157 DKKEELLLLEIILPLLNGGQMARHVDLSKEELILIKSLNLLTKKPIILIANVSEDYLRNL-NNNYLLIVE-WIAAYSKGD 234 (368)
T ss_pred hhHHHHHHHHHHHHHHhCCCeeccCCCCHHHHHHHHhCcchhhCCEEEEEECCHHHhhhc-ccHHHHHHH-HHhhcCcCC
Confidence 335678899999999999999997788999999999999999999999999998776422 144555555 8776 46
Q ss_pred CcEEEechhhhHhhcCCChHHHHHHHHHcCCCCC-hhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhcc
Q 014539 291 SGRVTISAQVEAELTELPSEERVEYLASLGVSES-GLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIH 369 (423)
Q Consensus 291 ~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~-~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~IH 369 (423)
..++++||+.|.++.+|++||+++||+++|+.+| |++++++.+|++|+|++|||+|++|+|||||++|+||+||||+||
T Consensus 235 ~~~~~~~a~~E~el~~l~~ee~~~fl~~~g~~~s~~~~~ii~~~y~lL~L~sFfT~g~~EvRaWti~~G~~Ap~AAG~IH 314 (368)
T TIGR00092 235 PKVVFVCALEESELSELDDEERQEFLQKLGLTESAGLNIIIRARYKLLLLSFFFTGGKEEVRAWTRKGGWAAPQAAGIIH 314 (368)
T ss_pred CeEEEeEHHHHHHHhcCCHHHHHHHHHHcCCcccchHHHHHHHHHHHhCeeEEEcCCCceeEEeecCCCCchhHhcCCcc
Confidence 6799999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred hhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 370 SDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 370 sD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
|||+||||||||++|+||++|||+++||++|++|++||+|+|||||||+|||||
T Consensus 315 sDfekgFIrAEV~~yddl~~~gs~~~~k~~Gk~r~eGK~YivqDGDIi~f~fnv 368 (368)
T TIGR00092 315 TDFETGFIAAEVISWDDFIYKKSSQGAKKGGLMRLEGKYYVVDDGDVLFFAFNV 368 (368)
T ss_pred cccccCceEEEEecHHHHHHcCCHHHHHhcCchhhcCCeEEeeCCeEEEEecCC
Confidence 999999999999999999999999999999999999999999999999999997
No 4
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.4e-93 Score=696.26 Aligned_cols=366 Identities=57% Similarity=0.902 Sum_probs=344.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccc-cccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSK-SQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~-~~~~~~~~i~lvDtpGl~~ 133 (423)
|.+++||||+||||||||||||| ...+.++||||||++||.|++.+++.|++.|+++++ |+++.|+.+.|+|+||+++
T Consensus 1 m~l~~GIVGlPNVGKSTlFnAlT-~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~ 79 (372)
T COG0012 1 MSLKIGIVGLPNVGKSTLFNALT-KAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK 79 (372)
T ss_pred CCceeEEecCCCCcHHHHHHHHH-cCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence 56899999999999999999999 666999999999999999999999999999999999 7999999999999999999
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchh-h
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQ-S 212 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~s-a 212 (423)
|+|+|+||||+||++||++|+|+||||||+++++.|+.+.+||++|+++|+.||++||++.++++|+++.+..+.+.+ .
T Consensus 80 GAs~GeGLGNkFL~~IRevdaI~hVVr~f~d~di~hv~~~vDP~~DIe~I~~EL~l~d~~~lek~~~r~~k~a~~~~~~~ 159 (372)
T COG0012 80 GASKGEGLGNKFLDNIREVDAIIHVVRCFGDTDIEHVEGKVDPVEDIEIINTELILWDLESLEKRWERLEKRAKAGKKLD 159 (372)
T ss_pred CcccCCCcchHHHHhhhhcCeEEEEEEecCCCcccCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988875410 1
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCC---CCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhc
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARS---VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~---~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 289 (423)
+.......++..+.++|.++.+.+. ..|++++..++++++++|.||++|++||++.+..+. +++.+++++++..+
T Consensus 160 k~~~~~l~~l~~~~~~l~~~~~~~~~~~~~~~~e~~~~l~~l~llt~KP~lyvaN~~e~~~~~~--n~~~~~i~~~~~~~ 237 (372)
T COG0012 160 KELKEELSLLGKLEEHLEEGKPARGLDLSKWSEEDLEALASLNLLTAKPMLYVANVSEDDLANL--NEYVKRLKELAAKE 237 (372)
T ss_pred HHHHHHHHHHHhHHHHHHhhhhhhcCCcccCCHHHHHHHHHhhhhhcCCeEEEEECCcccccch--hHHHHHHHHHhhhc
Confidence 5556777889999999999988753 369999999999999999999999999998876543 66799999999888
Q ss_pred CCcEEEechhhhHhhcCCCh-HHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhc
Q 014539 290 QSGRVTISAQVEAELTELPS-EERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVI 368 (423)
Q Consensus 290 ~~~~v~~Sa~~e~~i~~l~~-ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~I 368 (423)
+..+|++||+.|.+|.+|++ +++.+|+..+|+..+|+++++++.|.+|||++|||+|++|+|+|||++|+||+|+||.|
T Consensus 238 ~~~vV~~sA~~E~eL~~l~~~~e~~~F~~~~g~~~~~l~~~i~~~y~~lgl~~~ft~g~~evrawti~~g~kap~aaG~I 317 (372)
T COG0012 238 NAEVVPVSAAIELELRELADAEEKGEFLIELGQKESGLNELIRAGYGLLGLQTYFTAGVKEVRAWTIKDGSKAPDAAGVI 317 (372)
T ss_pred CCcEEEeeHHHHHHHHhCccccchhhHHHhcCcchhHHHHHHHHHhcccchhHHHhhcCCeEEEEEeccCCcccccCCcc
Confidence 88999999999999999987 88999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 369 HSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 369 HsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
||||++|||+|+|++|+|++.+||++.||.+|++|.+||||+|||||||+||||+
T Consensus 318 h~Dfe~~fi~aevi~~~d~i~~~~~~~Akeag~~r~~GkdY~vqdGDVi~Fk~~~ 372 (372)
T COG0012 318 HPDFEKGFIRAEVISYADLIHYGGEAAAKEAGKRRLEGKDYIVQDGDVIHFKFNV 372 (372)
T ss_pred ccchhhccccceEeeHHHHHhcCcHHHHHHhcceeeccccceecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999999999996
No 5
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=100.00 E-value=4.9e-89 Score=654.42 Aligned_cols=369 Identities=49% Similarity=0.782 Sum_probs=342.9
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
+..+.+++||||+||||||||||+|| +..+.++||||||++|+.+.+.++|.|+|+|+.+|+|++..|+.+.++|+||+
T Consensus 16 R~~~~lkiGIVGlPNvGKST~fnalT-~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGL 94 (391)
T KOG1491|consen 16 RDGNNLKIGIVGLPNVGKSTFFNALT-KSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGL 94 (391)
T ss_pred CCCCcceeeEeeCCCCchHHHHHHHh-cCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeeccc
Confidence 33467899999999999999999999 77777999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchh
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQ 211 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~s 211 (423)
++|+|.|+|+||.||+++|.||+|+||||||++.+++|+++.+||++|+++|+.||.++|++.++++++++.+..+...+
T Consensus 95 vkGAs~G~GLGN~FLs~iR~vDaifhVVr~f~d~di~hve~~vDPvrDieii~~EL~lkd~e~l~k~~e~~~k~~~~~~~ 174 (391)
T KOG1491|consen 95 VKGASAGEGLGNKFLSHIRHVDAIFHVVRAFEDTDIIHVEGGVDPVRDIEIIQEELRLKDLEFLEKRLEKLEKKHKRTKS 174 (391)
T ss_pred ccCcccCcCchHHHHHhhhhccceeEEEEecCcccceeccCCCCchhhHHHHHHHHHHhHHHHHHHHHHHHhhhhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887755432
Q ss_pred ---hhhhHHHHHHHHHHHHHHhcCCC-CCC-CCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHH
Q 014539 212 ---SKLKDAEKAALEKIQQALMDGKP-ARS-VTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 286 (423)
Q Consensus 212 ---a~~~~~~~~ll~~i~~~L~~~~~-~~~-~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~ 286 (423)
.++.+.+..+++.+.+.|.+++. ..+ ..|+++|.+++.+++++|.||++|++|+++.|+.+. .+.++..+++|.
T Consensus 175 ~~~~~q~k~e~~~l~~v~~~ll~~kk~~~~~~~W~d~eieiln~~~lLt~kP~Vyl~N~se~dy~r~-knk~l~~i~~w~ 253 (391)
T KOG1491|consen 175 NLETKQLKFEYGLLEKVKEKLLDGKKPVRPKEKWNDEEIEILNKLFLLTAKPTVYLLNLSEHDYARK-KNKKLPKIKEWV 253 (391)
T ss_pred cHHHHHHHHHHhHHHHHHHHHhccCCCCcchhhcCHHHHHHHHHhhhhhcCceEEEEecCcchhhhH-HHHHHhhhhhhh
Confidence 13445567799999998876544 344 489999999999999999999999999999988665 577889999998
Q ss_pred hhc--CCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhh
Q 014539 287 SDL--QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQA 364 (423)
Q Consensus 287 ~~~--~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~ 364 (423)
.+. +..++++|+..|..+.+|.+||+.+++++++-. |+|+++|.+.|+.|+||+|||+|++|||+|||++|++||+|
T Consensus 254 ~~~~~g~~~i~fs~~~e~ql~~~~~EE~~~~~~~~~~~-s~L~~iI~~~~~~L~li~fFt~G~~eV~~WtIr~gt~ap~a 332 (391)
T KOG1491|consen 254 DEVSPGDVVIVFSAAFESQLFELYEEEAVKELEDLGDS-SALPKIIKTGYSALNLIVFFTCGEDEVRAWTIRKGTKAPQA 332 (391)
T ss_pred hccCCCCeEEEehHHHHHHhhccCHHHHHHHHHhcccc-cchhHHHHHHHHhhCceEEEeeCCchheeeehhhccccccc
Confidence 754 577999999999999999999999999999975 99999999999999999999999999999999999999999
Q ss_pred hhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 365 AGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 365 A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
||+|||||+++||.|+|+.|+||..|||+.++|.+|+++++||+|+|+||||++||||.
T Consensus 333 agvihsdf~k~Fi~aev~~f~D~~~~k~e~a~k~~Gk~~~~Gk~yiVedGDIi~FK~~~ 391 (391)
T KOG1491|consen 333 AGVIHSDFEKGFIMAEVMKFEDFKEYKSESACKAAGKYRQVGKEYIVEDGDIIFFKFNP 391 (391)
T ss_pred cceeeehhhhhccccceeeeehHHHhcCHHHHHHhcchhhcCceeeecCCCEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 6
>PRK09602 translation-associated GTPase; Reviewed
Probab=100.00 E-value=1.3e-63 Score=506.74 Aligned_cols=337 Identities=31% Similarity=0.460 Sum_probs=276.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEec----CCccchhhccccc---cccccCceEEEEecC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLSK---SQKAVPASVEFVDIA 129 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~----~~~r~~~l~~~~~---~~~~~~~~i~lvDtp 129 (423)
++|||||+||||||||||+|| +..+.++++||||++|+.|++.+ ++.|++++++..+ +.+..+++++++|||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt-~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAAT-LADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHh-CCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 689999999999999999999 55678899999999999999876 5667776544333 334677889999999
Q ss_pred CCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc----ceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhc
Q 014539 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN----DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG 205 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~----~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~ 205 (423)
|++++++++.+++++|++++++||+++||+|+|.+. .+.| .+.+||++|+++++.||.++|++.+++++.++.+.
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~~~~~~~~~~~~-~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~~~ 159 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDASGSTDEEGNPVE-PGSHDPVEDIKFLEEELDMWIYGILEKNWEKFSRK 159 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccCCcccC-CCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999543 3344 78899999999999999999999999999988765
Q ss_pred cccchh--hhhhHHHHHHH----HHHHHHHh-cCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcc
Q 014539 206 KAKDSQ--SKLKDAEKAAL----EKIQQALM-DGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPH 278 (423)
Q Consensus 206 ~~~~~s--a~~~~~~~~ll----~~i~~~L~-~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~ 278 (423)
.+++.. .........++ +.++++|+ .+.+.+...|++++...++++++++.||++|++||.| .... +..
T Consensus 160 ~~~~~~~~~~~~~~~l~~~~~~e~~v~~~L~~~g~~~~~~~~~~~~~~~I~~~~l~t~KPvI~VlNK~D--~~~~--~~~ 235 (396)
T PRK09602 160 AQAEKFDIEEALAEQLSGLGINEEHVKEALRELGLPEDPSKWTDEDLLELARELRKISKPMVIAANKAD--LPPA--EEN 235 (396)
T ss_pred HhcCCcchHHHHHHHHhhhccCHHHHHHHHHHcCCcCcccCCCHHHHHHHHHhhhhcCCCEEEEEEchh--cccc--hHH
Confidence 443210 01111222223 67899998 4677776689999999999999999999999999996 3222 334
Q ss_pred hHHHHHHHhhcCCcEEEechhhhHhhcC---------------------CChHHH------HHHHHHcCCCCChhhHHH-
Q 014539 279 VNEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEER------VEYLASLGVSESGLGNLI- 330 (423)
Q Consensus 279 ~~~i~~~~~~~~~~~v~~Sa~~e~~i~~---------------------l~~ee~------~~~l~~~g~~~~~~~~li- 330 (423)
..++.++ .+..++++||+.|.++.+ ++++++ .+||..+|+ +|+++++
T Consensus 236 l~~i~~~---~~~~vvpISA~~e~~l~~~l~~~i~~~lp~~p~~~~~d~ltd~~~r~~E~IRk~l~~~g~--~~~~~~i~ 310 (396)
T PRK09602 236 IERLKEE---KYYIVVPTSAEAELALRRAAKAGLIDYIPGDSDFEILGELSEKQKKALEYIREVLKKYGG--TGVQEAIN 310 (396)
T ss_pred HHHHHhc---CCCcEEEEcchhhhhHHHHHHHhHHhhCCCCCccCccccCCHHHHHHHHHHHHHHHHhCC--chHHHHHH
Confidence 5555554 345699999999998765 555442 388999998 8999999
Q ss_pred HHHHhhhCCEEEecCCC----------CCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcC
Q 014539 331 RSTYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKG 400 (423)
Q Consensus 331 ~~~~~~L~li~~fT~g~----------~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g 400 (423)
+++|++||||+|||+++ +++|||++++|+||+|||++|||||+++||||+. +|
T Consensus 311 ~~~~~~L~li~~yt~~~~~~~~~~~g~~~~~~~~l~~g~t~~d~A~~IH~d~~~~fi~A~~--------------~~--- 373 (396)
T PRK09602 311 TAVFDLLDMIVVYPVEDENKLTDKKGNVLPDAFLLPKGSTARDLAYKIHTDIGEGFLYAID--------------AR--- 373 (396)
T ss_pred HHHHHHhCCEEEEecCcccccccccCcccceeEEECCCCCHHHHHHHHHHHHHhhceehhc--------------cc---
Confidence 89999999999999976 6778999999999999999999999999999993 33
Q ss_pred CccccCCCceecCCCEEEEEe
Q 014539 401 LLRSEGKDYIVQEGDVMLFRF 421 (423)
Q Consensus 401 ~~r~~Gkdy~v~dgDii~~~f 421 (423)
+.|++|+||+|+|||||+|.-
T Consensus 374 ~~~~~g~~~~l~dgDiv~i~~ 394 (396)
T PRK09602 374 TKRRIGEDYELKDGDVIKIVS 394 (396)
T ss_pred CCcccCCCcEecCCCEEEEEe
Confidence 356899999999999999963
No 7
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=100.00 E-value=4.6e-56 Score=430.08 Aligned_cols=274 Identities=59% Similarity=0.915 Sum_probs=253.4
Q ss_pred EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCcc
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (423)
|||||+||||||||||+|| +....++++||||++|+.|++.+++.|+++|+++++|++.+|+++.|+||||++++++.+
T Consensus 1 igivG~PN~GKSTLfn~Lt-~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALT-KAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCcHHHHHHHHh-CCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 6899999999999999999 455599999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhHHH
Q 014539 139 EGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDAE 218 (423)
Q Consensus 139 ~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~~~ 218 (423)
++++++|++++++||+++||||+|+++++.|+.+.+||++|+++++.||.++|++.++++++++.+..++.. +....+
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f~d~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~ek~~~~l~k~~~~~~--~~~~~e 157 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCFEDDDITHVEGSVDPVRDIEIINTELILADLETVEKRLERLEKKAKSGD--KEAKAE 157 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCcCCCCccCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc--HHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999887655432 334567
Q ss_pred HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEech
Q 014539 219 KAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISA 298 (423)
Q Consensus 219 ~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa 298 (423)
..+++++.++|+++.|++...||++|.+.|++++++|.||++|++|++++|+... +....++..++...+.+++++||
T Consensus 158 ~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KP~i~v~N~~e~d~~~~--~~~~~~~~~~~~~~~~~~i~~sa 235 (274)
T cd01900 158 LELLEKIKEHLEEGKPARSLELTEEEIEILNSLQLLTAKPVLYVANVSEDDLANG--NNKVLKVREIAAKEGAEVIPISA 235 (274)
T ss_pred HHHHHHHHHHHHcCCCcCcCCCCHHHHHHHHHHhHhhcCCceeecccCHHHhccc--cHHHHHHHHHHhcCCCeEEEeeH
Confidence 7899999999999999998899999999999999999999999999998877543 55667777777777888999999
Q ss_pred hhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhh
Q 014539 299 QVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLL 337 (423)
Q Consensus 299 ~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L 337 (423)
+.|.+|.+|++||+++||+++|+.+||++++|+++|++|
T Consensus 236 ~~E~eL~~l~~ee~~~fl~~~gi~es~l~riI~~~y~~L 274 (274)
T cd01900 236 KIEAELAELDEEEAAEFLEELGLEESGLDRLIRAGYELL 274 (274)
T ss_pred HHHHHHHcCCHHHHHHHHHHcCCccccHHHHHHHHHhhC
Confidence 999999999999999999999999999999999999987
No 8
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=100.00 E-value=9e-47 Score=361.69 Aligned_cols=288 Identities=27% Similarity=0.430 Sum_probs=218.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|++||+||||||||+|+|| +....+++|||||..|++|++.+.+ ++|+++|+||+++++
T Consensus 63 da~v~lVGfPsvGKStLL~~LT-nt~seva~y~FTTl~~VPG~l~Y~g-----------------a~IQild~Pgii~ga 124 (365)
T COG1163 63 DATVALVGFPSVGKSTLLNKLT-NTKSEVADYPFTTLEPVPGMLEYKG-----------------AQIQLLDLPGIIEGA 124 (365)
T ss_pred CeEEEEEcCCCccHHHHHHHHh-CCCccccccCceecccccceEeecC-----------------ceEEEEcCcccccCc
Confidence 3799999999999999999999 8889999999999999999999998 889999999999999
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHH--hhhccccchh-h
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK--LKKGKAKDSQ-S 212 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~--~~~~~~~~~s-a 212 (423)
+.+.+.|+++++.+|+||+|++|+|++.+. ..++.+..||.-..+-. .++... +.+...++.. .
T Consensus 125 s~g~grG~~vlsv~R~ADlIiiVld~~~~~------------~~~~~i~~ELe~~GIrl-nk~~p~V~I~kk~~gGI~i~ 191 (365)
T COG1163 125 SSGRGRGRQVLSVARNADLIIIVLDVFEDP------------HHRDIIERELEDVGIRL-NKRPPDVTIKKKESGGIRIN 191 (365)
T ss_pred ccCCCCcceeeeeeccCCEEEEEEecCCCh------------hHHHHHHHHHHhcCeEe-cCCCCceEEEEeccCCEEEe
Confidence 999999999999999999999999997543 22566666654333211 111111 1111111110 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCC-----CCChHH-HHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHH
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSV-----TLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLA 286 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~e-~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~ 286 (423)
.+..-..--.+.+...|.+.+..... +.|-++ .+.+. ....++|.+|++||.| ... .+.+..+.
T Consensus 192 ~t~~l~~~d~~~ir~iL~Ey~I~nA~V~Ir~dvTlDd~id~l~--~nrvY~p~l~v~NKiD--~~~------~e~~~~l~ 261 (365)
T COG1163 192 GTGPLTHLDEDTVRAILREYRIHNADVLIREDVTLDDLIDALE--GNRVYKPALYVVNKID--LPG------LEELERLA 261 (365)
T ss_pred cccccccCCHHHHHHHHHHhCcccceEEEecCCcHHHHHHHHh--hcceeeeeEEEEeccc--ccC------HHHHHHHH
Confidence 11110112256778888887765542 566554 22232 2368999999999994 332 23333333
Q ss_pred hhcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCC----cceEEecCCCChh
Q 014539 287 SDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKE----TKAWTIRAGMTAP 362 (423)
Q Consensus 287 ~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e----~raw~i~~gsta~ 362 (423)
+.. .++++||+.+. ++++|.+.+|+.||||++||+.|.+ ..|.++++|||+.
T Consensus 262 ~~~--~~v~isa~~~~----------------------nld~L~e~i~~~L~liRVYtK~~g~~pd~~~PlIlr~GsTV~ 317 (365)
T COG1163 262 RKP--NSVPISAKKGI----------------------NLDELKERIWDVLGLIRVYTKPPGEEPDFDEPLILRRGSTVG 317 (365)
T ss_pred hcc--ceEEEecccCC----------------------CHHHHHHHHHHhhCeEEEEecCCCCCCCCCCCeEEeCCCcHH
Confidence 322 58999998743 4588999999999999999998764 3799999999999
Q ss_pred hhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 363 QAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 363 ~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
|+|.+||+||.+.|.||.||+.+ +|+.|+ +||.||+++|+|||+|.
T Consensus 318 Dvc~~IH~~l~~~FryA~VWGkS----------vk~~~Q--rVG~dHvLeD~DIV~I~ 363 (365)
T COG1163 318 DVCRKIHRDLVENFRYARVWGKS----------VKHPGQ--RVGLDHVLEDEDIVEIH 363 (365)
T ss_pred HHHHHHHHHHHHhcceEEEeccC----------CCCCcc--ccCcCcCccCCCeEEEe
Confidence 99999999999999999999976 888875 79999999999999985
No 9
>PF06071 YchF-GTPase_C: Protein of unknown function (DUF933); InterPro: IPR013029 This domain is found at the C terminus of family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined []. This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and this C-terminal domain which is composed of a six-stranded half-barrel curved around an alpha helix. The central domain and this domain are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; PDB: 1NI3_A 1JAL_A 2DWQ_B 2DBY_A 2OHF_A.
Probab=100.00 E-value=9.4e-43 Score=272.67 Aligned_cols=84 Identities=74% Similarity=1.164 Sum_probs=76.5
Q ss_pred CEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014539 339 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 418 (423)
Q Consensus 339 li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 418 (423)
||+|||+||+|+|||++++|+|||||||+|||||+||||+|||++|+||+++||++.+|.+||+|++||||+|||||||+
T Consensus 1 L~tffT~G~~EvRaWti~~G~~Ap~aAG~IHsDfekgFI~Aevi~~~d~~~~~s~~~~k~~Gk~r~eGK~YivqDGDIi~ 80 (84)
T PF06071_consen 1 LITFFTAGPKEVRAWTIRKGTTAPQAAGVIHSDFEKGFIRAEVISYDDFVEYGSEAAAKEAGKLRLEGKDYIVQDGDIIH 80 (84)
T ss_dssp EEEEEEESSSEEEEEEEETT-BHHHHHHCC-THHHHHEEEEEEEEHHHHHHHTSHHHHHHTT-SEEEETT-B--TTEEEE
T ss_pred CceEEccCCCeEEEEEccCCCCHHHhHhHHHHHHHhhceEEEEEcHHHHHHcCCHHHHHHcCCccccCCceeEeCCCEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEec
Q 014539 419 FRFN 422 (423)
Q Consensus 419 ~~f~ 422 (423)
||||
T Consensus 81 f~fN 84 (84)
T PF06071_consen 81 FRFN 84 (84)
T ss_dssp EEE-
T ss_pred EEcC
Confidence 9998
No 10
>cd04867 TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally conserved GTPase whose function is unknown. The N-terminal domain of the YchF protein belongs to the Obg-like family of GTPases, and some members of the family contain a C-terminal TGS domain. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=100.00 E-value=7e-42 Score=265.94 Aligned_cols=83 Identities=63% Similarity=1.097 Sum_probs=82.2
Q ss_pred CEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014539 339 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 418 (423)
Q Consensus 339 li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 418 (423)
|++|||+||+|+||||+++|+|||||||+|||||+||||+|||++|+||++|||++.||++|++|++||||+||||||++
T Consensus 1 L~tffT~G~~EvRAWti~~g~tAp~AAG~IHsDfekgFIrAeVi~~~d~i~~g~~~~ak~~Gkir~eGK~Yiv~DGDi~~ 80 (83)
T cd04867 1 LISFFTAGPDEVRAWTIRKGTKAPQAAGVIHTDFEKGFIRAEVMKYEDLVELGSEAAAKEAGKYRQEGKDYVVQDGDIIF 80 (83)
T ss_pred CccEECCCCCeEEEEEccCCCChHHhcCCcccccccCcEEEEEEcHHHHHHcCCHHHHHHcChhhhhCCceEeeCCeEEE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEe
Q 014539 419 FRF 421 (423)
Q Consensus 419 ~~f 421 (423)
|||
T Consensus 81 f~f 83 (83)
T cd04867 81 FKF 83 (83)
T ss_pred EEC
Confidence 997
No 11
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=100.00 E-value=4.9e-37 Score=303.93 Aligned_cols=240 Identities=30% Similarity=0.450 Sum_probs=192.4
Q ss_pred EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEec----CCccchhhcccc-----ccccccCceEEEEecC
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV----PDPRLHVLSGLS-----KSQKAVPASVEFVDIA 129 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~----~~~r~~~l~~~~-----~~~~~~~~~i~lvDtp 129 (423)
|||||+||||||||||+|| +..+.++++||||++|+.|+..+ ++.|++.++... ++.+ ..++++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt-~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~v~i~l~D~a 77 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAAT-LADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKR--YVPVELIDVA 77 (318)
T ss_pred CEEECCCCCCHHHHHHHHh-CCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcC--cceEEEEECC
Confidence 6899999999999999999 66679999999999999998875 778888887542 2223 3459999999
Q ss_pred CCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcc---eeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhcc
Q 014539 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND---IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK 206 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~---~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~ 206 (423)
|++++++++.+++++|++++|+||+++||+|+++..+ +.|+.+.+||++|+++++.||.+||++.++++++++.+..
T Consensus 78 Glv~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~~~~d~~~~~~~~~~~dp~~d~~~i~~El~~~d~~~~~~~~~~~~~~~ 157 (318)
T cd01899 78 GLVPGAHEGKGLGNKFLDDLRDADALIHVVDASGGTDAEGNGVETGGHDPLEDIEFLENEIDMWIYGILEKNWEKIVRKA 157 (318)
T ss_pred CCCCCccchhhHHHHHHHHHHHCCEEEEEEeCCCCcccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999997654 4889999999999999999999999999999999988765
Q ss_pred ccchh--hhhhHHHHHHH----HHHHHHHhcCC-CCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcch
Q 014539 207 AKDSQ--SKLKDAEKAAL----EKIQQALMDGK-PARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHV 279 (423)
Q Consensus 207 ~~~~s--a~~~~~~~~ll----~~i~~~L~~~~-~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~ 279 (423)
.++.. .....+...++ +.+.+.|+++. +.+...|++.+.+.+.++++++.||++|++||.| +... +...
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~llt~KPvI~VlNK~D--l~~~--~~~~ 233 (318)
T cd01899 158 DAEKTDIVEALSEQLSGFGVNEKDVIEALEELELPEDLSKWTDEDLLRLARALRKRSKPMVIAANKAD--IPDA--ENNI 233 (318)
T ss_pred hcCCccHHHHHHHHHhhccccHHHHHHHHHhCCCCCcccCCCHHHHHHHHHHHHhcCCcEEEEEEHHH--ccCh--HHHH
Confidence 44321 11233334444 78888887755 5555579999999999999999999999999995 4332 3334
Q ss_pred HHHHHHHhhcCCcEEEechhhhHhhcCC
Q 014539 280 NEVMNLASDLQSGRVTISAQVEAELTEL 307 (423)
Q Consensus 280 ~~i~~~~~~~~~~~v~~Sa~~e~~i~~l 307 (423)
+.+.. ......++++||+.|.++.+|
T Consensus 234 ~~l~~--~~~~~~iI~iSA~~e~~L~~L 259 (318)
T cd01899 234 SKLRL--KYPDEIVVPTSAEAELALRRA 259 (318)
T ss_pred HHHHh--hCCCCeEEEEeCcccccHHHH
Confidence 43332 223456999999999877555
No 12
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=100.00 E-value=4.1e-36 Score=278.47 Aligned_cols=289 Identities=22% Similarity=0.305 Sum_probs=215.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|++||+|+||||||+..+| ...+..++|.|||....+|++.+.+ +.|+++|.||++.|+
T Consensus 62 daRValIGfPSVGKStlLs~iT-~T~SeaA~yeFTTLtcIpGvi~y~g-----------------a~IQllDLPGIieGA 123 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKIT-STHSEAASYEFTTLTCIPGVIHYNG-----------------ANIQLLDLPGIIEGA 123 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhh-cchhhhhceeeeEEEeecceEEecC-----------------ceEEEecCccccccc
Confidence 3799999999999999999999 7788899999999999999999988 679999999999999
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccc-hh-hh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKD-SQ-SK 213 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~-~s-a~ 213 (423)
++++|.|++..+..|.||+|+.|+|++..+ ..-+.+++||.-..+..-.+..+-+.+..+.+ .+ ..
T Consensus 124 sqgkGRGRQviavArtaDlilMvLDatk~e------------~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~ 191 (364)
T KOG1486|consen 124 SQGKGRGRQVIAVARTADLILMVLDATKSE------------DQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNT 191 (364)
T ss_pred ccCCCCCceEEEEeecccEEEEEecCCcch------------hHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEee
Confidence 999999999999999999999999997543 23456666654332211111111111111111 11 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCC-----CCCChHH-HHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHh
Q 014539 214 LKDAEKAALEKIQQALMDGKPARS-----VTLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS 287 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~-----~~~t~~e-~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~ 287 (423)
+-.-...--..+...|.+.+.... .+.|.++ ...+ .....+-+++||.||.| ...++++..+++
T Consensus 192 T~~lT~~~ek~i~~ILheykI~Naevl~ReD~t~DdfIDvi--~gnr~Y~~ClYvYnKID--------~vs~eevdrlAr 261 (364)
T KOG1486|consen 192 TVPLTHCDEKLIYTILHEYKIHNAEVLFREDCTVDDFIDVI--EGNRVYIKCLYVYNKID--------QVSIEEVDRLAR 261 (364)
T ss_pred eeccccccHHHHHHHHHHHeeccceEEEecCCChHHHHHHH--hccceEEEEEEEeeccc--------eecHHHHHHHhc
Confidence 000000011223344555554332 3566554 4444 34568889999999984 234778888887
Q ss_pred hcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCC----CcceEEecCCCChhh
Q 014539 288 DLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK----ETKAWTIRAGMTAPQ 363 (423)
Q Consensus 288 ~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~----e~raw~i~~gsta~~ 363 (423)
.++ .+++|+... -+++.+++.+|+.|+|.++||+.+. --+|.++++|+|+.|
T Consensus 262 ~Pn--svViSC~m~----------------------lnld~lle~iWe~l~L~rvYtKk~g~~Pdfdd~~vlr~g~tve~ 317 (364)
T KOG1486|consen 262 QPN--SVVISCNMK----------------------LNLDRLLERIWEELNLVRVYTKKKGQRPDFDDPLVLRKGSTVED 317 (364)
T ss_pred CCC--cEEEEeccc----------------------cCHHHHHHHHHHHhceEEEEecCCCCCCCCCCceEEeCCCcHHH
Confidence 766 466776543 3468999999999999999998744 458999999999999
Q ss_pred hhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 364 AAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 364 ~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
+|..||.||+..|+||-|||-+ ||+. ++++|-.|.+.|.|+|.+-
T Consensus 318 ~C~~iHr~l~~qfkyAlVWGtS----------akhs--PQrvgl~h~~~dEdvvqi~ 362 (364)
T KOG1486|consen 318 VCHRIHRTLAAQFKYALVWGTS----------AKHS--PQRVGLGHTLEDEDVVQIV 362 (364)
T ss_pred HHHHHHHHHHHhhceeeEeccc----------cccC--cceeccccccccccceeee
Confidence 9999999999999999999976 7775 6789999999999999873
No 13
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.97 E-value=3e-31 Score=247.10 Aligned_cols=285 Identities=21% Similarity=0.300 Sum_probs=210.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|+|++|||||++.|+ +..++++.+-|||...+.|+..+.+ +.+++.|.||+++++.
T Consensus 60 a~vg~vgFPSvGksTl~~~l~-g~~s~vasyefttl~~vpG~~~y~g-----------------aKiqlldlpgiiegak 121 (358)
T KOG1487|consen 60 ARVGFVGFPSVGKSTLLSKLT-GTFSEVAAYEFTTLTTVPGVIRYKG-----------------AKIQLLDLPGIIEGAK 121 (358)
T ss_pred eeeeEEecCccchhhhhhhhc-CCCCccccccceeEEEecceEeccc-----------------cceeeecCcchhcccc
Confidence 489999999999999999999 6778899999999999999998887 6699999999999999
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHH-hhhccccchhhhhh
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK-LKKGKAKDSQSKLK 215 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~-~~~~~~~~~sa~~~ 215 (423)
.|+|.|.+.++..|.|.+|+.|+|+ ..|+.....+++||.-..+..-.+..+- ..+..+.+ .+.
T Consensus 122 dgkgrg~qviavartcnli~~vld~------------~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgG---Inl 186 (358)
T KOG1487|consen 122 DGKGRGKQVIAVARTCNLIFIVLDV------------LKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGG---INL 186 (358)
T ss_pred cCCCCccEEEEEeecccEEEEEeec------------cCcccHHHHHHHhhhcceeeccCCCCCccccccccCc---eee
Confidence 9999999999999999999999998 4788889999998875443211111110 11111122 111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCC-----CCChHH-HHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhc
Q 014539 216 DAEKAALEKIQQALMDGKPARSV-----TLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~e-~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 289 (423)
.+..--++.+...+.+.+..... +.|.++ ...+. +...+-|.+|++|+.+. -+++++.-..+
T Consensus 187 t~~~LdlD~~rsil~eyR~hsAdi~Lr~DaT~DdLIdvVe--gnr~yVp~iyvLNkIds--------ISiEELdii~~-- 254 (358)
T KOG1487|consen 187 TGTHLDLDLQRSILSEYRIHSADIALRFDATADDLIDVVE--GNRIYVPCIYVLNKIDS--------ISIEELDIIYT-- 254 (358)
T ss_pred ecchhhHHHHHHHHHHhhhcchheeeecCcchhhhhhhhc--cCceeeeeeeeecccce--------eeeeccceeee--
Confidence 12112345555556655543331 333322 22221 33578899999999853 22333432222
Q ss_pred CCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCC----CcceEEecCC-CChhhh
Q 014539 290 QSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK----ETKAWTIRAG-MTAPQA 364 (423)
Q Consensus 290 ~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~----e~raw~i~~g-sta~~~ 364 (423)
..+.+++||..+.++ +.++..+++.|+|.++||..+. -..+.+++.+ +|+.|+
T Consensus 255 iphavpISA~~~wn~----------------------d~lL~~mweyL~LvriYtkPKgq~PDy~~pVvLs~~~~sv~df 312 (358)
T KOG1487|consen 255 IPHAVPISAHTGWNF----------------------DKLLEKMWEYLKLVRIYTKPKGQPPDYTSPVVLSSERRSVEDF 312 (358)
T ss_pred ccceeecccccccch----------------------HHHHHHHhhcchheEEecCCCCCCCCCCCCceecCCcccHHHH
Confidence 235799999887654 7888999999999999998744 3456666655 899999
Q ss_pred hhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 365 AGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 365 A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
|.+||+++.+.|.+|-||+-+ +|+. .+++|++|+++|.|||.|.
T Consensus 313 c~~ih~~~~~~fk~alvwg~s----------~kh~--pq~vg~~h~l~dedvv~iv 356 (358)
T KOG1487|consen 313 CNKIHKSILKQFKYALVWGSS----------VKHN--PQRVGKEHVLEDEDVVQIV 356 (358)
T ss_pred HHHHHHHHHHhhhhheEeccc----------cCcC--hhhcchhheeccchhhhhc
Confidence 999999999999999999976 7776 4589999999999999873
No 14
>COG1159 Era GTPase [General function prediction only]
Probab=99.96 E-value=8.2e-29 Score=237.18 Aligned_cols=192 Identities=28% Similarity=0.291 Sum_probs=152.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+..|+|||+||||||||+|+|.|.+.+++|+.|+||++...|+++.++ +|++|+||||++++.
T Consensus 6 sGfVaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~-----------------~QiIfvDTPGih~pk 68 (298)
T COG1159 6 SGFVAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDN-----------------AQIIFVDTPGIHKPK 68 (298)
T ss_pred EEEEEEEcCCCCcHHHHHHHHhcCceEeecCCcchhhhheeEEEEcCC-----------------ceEEEEeCCCCCCcc
Confidence 357999999999999999999999999999999999999999998876 899999999999887
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEeccCCc----------------ceeeecccccCCcchHHHhhhhccCcHHHHHHH
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~----------------~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~ 198 (423)
+. ++.+.+.+.+.+.+||++++|+|+.+.. .++.+.|++|.+.+...+ +.-.+.....
T Consensus 69 ~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l-----~~~~~~~~~~ 143 (298)
T COG1159 69 HALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVL-----LKLIAFLKKL 143 (298)
T ss_pred hHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHH-----HHHHHHHHhh
Confidence 65 6777788899999999999999997732 234455667666544321 1111111122
Q ss_pred HHHhhhccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCC-CCChH-H----HHHHH-HHhhhhCcceEEeeeccccccC
Q 014539 199 MEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSV-TLNDF-E----RDSIK-QLCLLTMKPIIYVANVAESDLA 271 (423)
Q Consensus 199 ~~~~~~~~~~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-e----~e~ir-~~~~~t~kpi~~v~N~~~~d~~ 271 (423)
.++....+ .||.++.++..|++.+.++|++|+++||. .+||. + .|++| ++++.++.++||++.+..+++.
T Consensus 144 ~~f~~ivp---iSA~~g~n~~~L~~~i~~~Lpeg~~~yp~d~itD~~~rf~~aEiiREk~~~~l~eElPhsv~VeIe~~~ 220 (298)
T COG1159 144 LPFKEIVP---ISALKGDNVDTLLEIIKEYLPEGPWYYPEDQITDRPERFLAAEIIREKLLLLLREELPHSVAVEIEEFE 220 (298)
T ss_pred CCcceEEE---eeccccCCHHHHHHHHHHhCCCCCCcCChhhccCChHHHHHHHHHHHHHHHhcccccCceEEEEEEEEE
Confidence 22221111 15789999999999999999999999997 46766 2 89999 8899999999999999998876
Q ss_pred C
Q 014539 272 D 272 (423)
Q Consensus 272 ~ 272 (423)
+
T Consensus 221 ~ 221 (298)
T COG1159 221 E 221 (298)
T ss_pred e
Confidence 4
No 15
>COG2262 HflX GTPases [General function prediction only]
Probab=99.93 E-value=7.7e-26 Score=224.49 Aligned_cols=139 Identities=28% Similarity=0.373 Sum_probs=114.8
Q ss_pred cccccccccchhhhcCCCCcchhHHHhhhcccccCCcchhh------------------------hhhhhhhhccccCCc
Q 014539 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS------------------------SRRRFSSASKISMSL 57 (423)
Q Consensus 2 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 57 (423)
||||||+|++|++.+.+.+++ +.+++++.+|+++.. .+..++++|....-+
T Consensus 119 VeLAqL~Y~lpRl~~~~~~l~-----~~GggiG~rGpGE~~lE~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p 193 (411)
T COG2262 119 VELAQLRYELPRLVGSGSHLS-----RLGGGIGFRGPGETQLETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIP 193 (411)
T ss_pred hhHHhhhhhhhHhHhhhhhcc-----cccCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCC
Confidence 799999999999999998877 467889999988873 111133444445568
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
.|++|||+|||||||||+|| +....+.+..|+|.+|....+.+++. .++.|.||.|++..-+
T Consensus 194 ~vaLvGYTNAGKSTL~N~LT-~~~~~~~d~LFATLdpttR~~~l~~g----------------~~vlLtDTVGFI~~LP- 255 (411)
T COG2262 194 LVALVGYTNAGKSTLFNALT-GADVYVADQLFATLDPTTRRIELGDG----------------RKVLLTDTVGFIRDLP- 255 (411)
T ss_pred eEEEEeeccccHHHHHHHHh-ccCeeccccccccccCceeEEEeCCC----------------ceEEEecCccCcccCC-
Confidence 99999999999999999999 77888999999999999999999873 4699999999997665
Q ss_pred ccchhhHH---hhhhhhcceEEEEEeccCC
Q 014539 138 GEGLGNKF---LSHIREVDSILQVVRCFED 164 (423)
Q Consensus 138 ~~~l~~~~---l~~ir~aD~il~Vvd~~~~ 164 (423)
..+...| |....+||+++||||+|++
T Consensus 256 -~~LV~AFksTLEE~~~aDlllhVVDaSdp 284 (411)
T COG2262 256 -HPLVEAFKSTLEEVKEADLLLHVVDASDP 284 (411)
T ss_pred -hHHHHHHHHHHHHhhcCCEEEEEeecCCh
Confidence 4555444 6778889999999999854
No 16
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.92 E-value=1.2e-24 Score=225.70 Aligned_cols=173 Identities=32% Similarity=0.493 Sum_probs=127.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+|||+||||||||||+|+ .....++++||||++|+.+++.+.+ .+++|+||||+++++
T Consensus 159 ~adV~LVG~PNAGKSTLln~Ls-~akpkIadypfTTl~P~lGvv~~~~-----------------~~f~laDtPGliega 220 (500)
T PRK12296 159 VADVGLVGFPSAGKSSLISALS-AAKPKIADYPFTTLVPNLGVVQAGD-----------------TRFTVADVPGLIPGA 220 (500)
T ss_pred cceEEEEEcCCCCHHHHHHHHh-cCCccccccCcccccceEEEEEECC-----------------eEEEEEECCCCcccc
Confidence 3689999999999999999999 5667789999999999999998876 569999999999999
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+++.+++..|+.++.+||+|+||||+++.. ...||+.+++.+..||......
T Consensus 221 s~g~gLg~~fLrhieradvLv~VVD~s~~e------~~rdp~~d~~~i~~EL~~y~~~---------------------- 272 (500)
T PRK12296 221 SEGKGLGLDFLRHIERCAVLVHVVDCATLE------PGRDPLSDIDALEAELAAYAPA---------------------- 272 (500)
T ss_pred chhhHHHHHHHHHHHhcCEEEEEECCcccc------cccCchhhHHHHHHHHHHhhhc----------------------
Confidence 988899999999999999999999987521 1135676666554443211000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+.. +. .+..+..+|+++++||.| +++. ....+.+.+.+.+.+.++++
T Consensus 273 -------------l~~-----~~-----------~~~~l~~kP~IVVlNKiD--L~da--~el~e~l~~~l~~~g~~Vf~ 319 (500)
T PRK12296 273 -------------LDG-----DL-----------GLGDLAERPRLVVLNKID--VPDA--RELAEFVRPELEARGWPVFE 319 (500)
T ss_pred -------------ccc-----cc-----------hhhhhcCCCEEEEEECcc--chhh--HHHHHHHHHHHHHcCCeEEE
Confidence 000 00 001136799999999994 5432 23344445444555788999
Q ss_pred echhhhHhhcCC
Q 014539 296 ISAQVEAELTEL 307 (423)
Q Consensus 296 ~Sa~~e~~i~~l 307 (423)
+||+.+.+|.+|
T Consensus 320 ISA~tgeGLdEL 331 (500)
T PRK12296 320 VSAASREGLREL 331 (500)
T ss_pred EECCCCCCHHHH
Confidence 999998777554
No 17
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.92 E-value=7.2e-25 Score=212.60 Aligned_cols=107 Identities=44% Similarity=0.708 Sum_probs=96.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..||+||+||||||||+|+++ .....+++|||||+.|+.|++.+.+. ..+++-|+||+++++|
T Consensus 160 ADVGLVG~PNaGKSTlls~vS-~AkPKIadYpFTTL~PnLGvV~~~~~----------------~sfv~ADIPGLIEGAs 222 (369)
T COG0536 160 ADVGLVGLPNAGKSTLLSAVS-AAKPKIADYPFTTLVPNLGVVRVDGG----------------ESFVVADIPGLIEGAS 222 (369)
T ss_pred cccccccCCCCcHHHHHHHHh-hcCCcccCCccccccCcccEEEecCC----------------CcEEEecCcccccccc
Confidence 579999999999999999999 88999999999999999999987442 4599999999999999
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhh
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLEL 187 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El 187 (423)
++.|+|.+||.|+..|-+++||||++..+. .||+.++..|+.||
T Consensus 223 ~G~GLG~~FLrHIERt~vL~hviD~s~~~~-------~dp~~~~~~i~~EL 266 (369)
T COG0536 223 EGVGLGLRFLRHIERTRVLLHVIDLSPIDG-------RDPIEDYQTIRNEL 266 (369)
T ss_pred cCCCccHHHHHHHHhhheeEEEEecCcccC-------CCHHHHHHHHHHHH
Confidence 999999999999999999999999976442 67888888887765
No 18
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.92 E-value=3.3e-25 Score=212.51 Aligned_cols=161 Identities=31% Similarity=0.501 Sum_probs=126.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..||+||+||||||||+|+|+ .+...+++|+|||..|+.|.+.++| ..++.+-|+||+++++|
T Consensus 197 advGLVG~PNAGKSTLL~als-~AKpkVa~YaFTTL~P~iG~v~ydd----------------f~q~tVADiPGiI~GAh 259 (366)
T KOG1489|consen 197 ADVGLVGFPNAGKSTLLNALS-RAKPKVAHYAFTTLRPHIGTVNYDD----------------FSQITVADIPGIIEGAH 259 (366)
T ss_pred cccceecCCCCcHHHHHHHhh-ccCCcccccceeeeccccceeeccc----------------cceeEeccCcccccccc
Confidence 689999999999999999999 8888999999999999999998887 36799999999999999
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
.++|+|-.||.|+..|+.+++|||++.... ..|..+++.+..||.+
T Consensus 260 ~nkGlG~~FLrHiER~~~l~fVvD~s~~~~-------~~p~~~~~lL~~ELe~--------------------------- 305 (366)
T KOG1489|consen 260 MNKGLGYKFLRHIERCKGLLFVVDLSGKQL-------RNPWQQLQLLIEELEL--------------------------- 305 (366)
T ss_pred ccCcccHHHHHHHHhhceEEEEEECCCccc-------CCHHHHHHHHHHHHHH---------------------------
Confidence 999999999999999999999999986532 3455444444333211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
.++ .++.+|.++|+||.| .+++ .+..++++.+..+ +..++++
T Consensus 306 ------------yek---------------------~L~~rp~liVaNKiD--~~ea-e~~~l~~L~~~lq--~~~V~pv 347 (366)
T KOG1489|consen 306 ------------YEK---------------------GLADRPALIVANKID--LPEA-EKNLLSSLAKRLQ--NPHVVPV 347 (366)
T ss_pred ------------Hhh---------------------hhccCceEEEEeccC--chhH-HHHHHHHHHHHcC--CCcEEEe
Confidence 011 148899999999994 5443 1233456655543 2359999
Q ss_pred chhhhHhhcC
Q 014539 297 SAQVEAELTE 306 (423)
Q Consensus 297 Sa~~e~~i~~ 306 (423)
||+.+.++.+
T Consensus 348 sA~~~egl~~ 357 (366)
T KOG1489|consen 348 SAKSGEGLEE 357 (366)
T ss_pred eeccccchHH
Confidence 9999876644
No 19
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.91 E-value=9.6e-24 Score=216.13 Aligned_cols=90 Identities=46% Similarity=0.770 Sum_probs=81.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|+|||+||||||||+|+|+ +..+.++++||||+.|+.+.+.+++. .++.|+||||++.+++
T Consensus 159 adVglVG~pNaGKSTLLn~Lt-~ak~kIa~ypfTTl~PnlG~v~~~~~----------------~~~~laD~PGliega~ 221 (424)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVS-NAKPKIANYHFTTLVPNLGVVETDDG----------------RSFVMADIPGLIEGAS 221 (424)
T ss_pred CcEEEEcCCCCCHHHHHHHHH-cCCCccccCCcceeceEEEEEEEeCC----------------ceEEEEECCCCccccc
Confidence 489999999999999999999 66677899999999999999887631 4699999999999999
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.+++..|+.++.+||+++||+|+++
T Consensus 222 ~~~gLg~~fLrhier~~llI~VID~s~ 248 (424)
T PRK12297 222 EGVGLGHQFLRHIERTRVIVHVIDMSG 248 (424)
T ss_pred ccchHHHHHHHHHhhCCEEEEEEeCCc
Confidence 888999999999999999999999864
No 20
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.90 E-value=1.9e-23 Score=203.25 Aligned_cols=185 Identities=22% Similarity=0.160 Sum_probs=136.9
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|+||||||||+|+|+|...+.++++|+||++...++...++ .++.||||||+....+.
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~vs~~~~TTr~~i~~i~~~~~-----------------~qii~vDTPG~~~~~~~ 64 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISITSPKAQTTRNRISGIHTTGA-----------------SQIIFIDTPGFHEKKHS 64 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeecCCCCCcccCcEEEEEEcCC-----------------cEEEEEECcCCCCCcch
Confidence 6999999999999999999988888899999999998888776554 57999999999765432
Q ss_pred -ccchhhHHhhhhhhcceEEEEEeccCCcc---------------eeeecccccCCcchHHHhhhhccCcHHHHHHHHHH
Q 014539 138 -GEGLGNKFLSHIREVDSILQVVRCFEDND---------------IVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK 201 (423)
Q Consensus 138 -~~~l~~~~l~~ir~aD~il~Vvd~~~~~~---------------~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~ 201 (423)
.+.+...+...+++||++++|+|+++... +..+.|+.|....- .+...+..
T Consensus 65 l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~~~i~~~l~~~~~p~ilV~NK~Dl~~~~-------------~~~~~~~~ 131 (270)
T TIGR00436 65 LNRLMMKEARSAIGGVDLILFVVDSDQWNGDGEFVLTKLQNLKRPVVLTRNKLDNKFKD-------------KLLPLIDK 131 (270)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEECCCCCchHHHHHHHHHhcCCCEEEEEECeeCCCHH-------------HHHHHHHH
Confidence 23344556788999999999999975432 22333444433111 11111111
Q ss_pred hhhccc----cchhhhhhHHHHHHHHHHHHHHhcCCCCCCCC-CChH-----HHHHHH-HHhhhhCcceEEeeecccccc
Q 014539 202 LKKGKA----KDSQSKLKDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERDSIK-QLCLLTMKPIIYVANVAESDL 270 (423)
Q Consensus 202 ~~~~~~----~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----e~e~ir-~~~~~t~kpi~~v~N~~~~d~ 270 (423)
+..... -..||+++.++.++++.+.+.+++++|+|+.+ +|+. -.|++| +++..+++++||.+.+..+.|
T Consensus 132 ~~~~~~~~~v~~iSA~~g~gi~~L~~~l~~~l~~~~~~~~~~~~t~~~~~~~~~e~ire~~~~~~~~e~p~~~~~~~~~~ 211 (270)
T TIGR00436 132 YAILEDFKDIVPISALTGDNTSFLAAFIEVHLPEGPFRYPEDYVTDQPDRFKISEIIREKIIRYTKEEIPHSVRVEIERK 211 (270)
T ss_pred HHhhcCCCceEEEecCCCCCHHHHHHHHHHhCCCCCCCCCCcccCCCCHHHHHHHHHHHHHHHhcccccCceEEEEEEEE
Confidence 111110 11257899999999999999999999999873 5655 289999 888899999999999998888
Q ss_pred CC
Q 014539 271 AD 272 (423)
Q Consensus 271 ~~ 272 (423)
.+
T Consensus 212 ~~ 213 (270)
T TIGR00436 212 SF 213 (270)
T ss_pred EE
Confidence 64
No 21
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.89 E-value=2.6e-23 Score=198.16 Aligned_cols=223 Identities=26% Similarity=0.383 Sum_probs=146.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.||+|||||+|+|+ +....++++||+|.++..|.+.+.+ .++++|||||+.++...
T Consensus 2 ~v~lvG~~~~GKStLl~~Lt-g~~~~v~~~~~tT~~~~~g~~~~~~-----------------~~i~l~DtpG~~~~~~~ 63 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLT-NTKSEVAAYEFTTLTCVPGVLEYKG-----------------AKIQLLDLPGIIEGAAD 63 (233)
T ss_pred EEEEECCCCCCHHHHHHHHH-CCCccccCCCCccccceEEEEEECC-----------------eEEEEEECCCccccccc
Confidence 79999999999999999999 4556789999999999999998876 56999999999887766
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhcc--ccchh-hhh
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGK--AKDSQ-SKL 214 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~--~~~~s-a~~ 214 (423)
..++..+++..+++||++++|+|+++.. +....+.+++....+ .+.+....+.... ..+.+ ..+
T Consensus 64 ~~~~~~~~l~~~~~ad~il~V~D~t~~~------------~~~~~~~~~l~~~gi-~l~~~~~~v~~~~~~~ggi~~~~~ 130 (233)
T cd01896 64 GKGRGRQVIAVARTADLILMVLDATKPE------------GHREILERELEGVGI-RLNKRPPNITIKKKKKGGINITST 130 (233)
T ss_pred chhHHHHHHHhhccCCEEEEEecCCcch------------hHHHHHHHHHHHcCc-eecCCCCeEEEEEEecCCEEEecc
Confidence 6677788899999999999999986432 234444444433222 1111111110000 00100 001
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCC-----CCChHH-HHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhh
Q 014539 215 KDAEKAALEKIQQALMDGKPARSV-----TLNDFE-RDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD 288 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~-----~~t~~e-~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~ 288 (423)
......-.+.+.+.|.+.+...+. +.|-++ ...+ .....+.|+++++||.| ... .+++..++..
T Consensus 131 ~~~~~~~~~~v~~~l~~~~i~~~~v~~~~~~~~~~~~~~~--~~~~~y~p~iiV~NK~D--l~~------~~~~~~~~~~ 200 (233)
T cd01896 131 VPLTKLDEKTIKAILREYKIHNADVLIREDITVDDLIDVI--EGNRVYIPCLYVYNKID--LIS------IEELDLLARQ 200 (233)
T ss_pred CCCCCCCHHHHHHHHHHhCeeeEEEEEccCCCHHHHHHHH--hCCceEeeEEEEEECcc--CCC------HHHHHHHhcC
Confidence 111111235566667766554432 344333 2222 13368899999999995 322 2334445433
Q ss_pred cCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecC
Q 014539 289 LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTS 345 (423)
Q Consensus 289 ~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~ 345 (423)
..++++||+.+ .|++++.+.+++.|+||++||+
T Consensus 201 --~~~~~~SA~~g----------------------~gi~~l~~~i~~~L~~irvy~k 233 (233)
T cd01896 201 --PNSVVISAEKG----------------------LNLDELKERIWDKLGLIRVYTK 233 (233)
T ss_pred --CCEEEEcCCCC----------------------CCHHHHHHHHHHHhCcEEEecC
Confidence 35889999874 5668899999999999999995
No 22
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.89 E-value=8.7e-23 Score=203.97 Aligned_cols=90 Identities=47% Similarity=0.798 Sum_probs=82.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|+|||+||||||||+|+|+ ...+.++++||||++|+.+.+.+++. .++.+|||||++++++
T Consensus 159 adVglVG~PNaGKSTLln~ls-~a~~~va~ypfTT~~p~~G~v~~~~~----------------~~~~i~D~PGli~ga~ 221 (335)
T PRK12299 159 ADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLHPNLGVVRVDDY----------------KSFVIADIPGLIEGAS 221 (335)
T ss_pred CCEEEEcCCCCCHHHHHHHHH-cCCCccCCCCCceeCceEEEEEeCCC----------------cEEEEEeCCCccCCCC
Confidence 689999999999999999999 56677999999999999999987541 3599999999999999
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
++.+++.+|+.+++.||+++||+|+++
T Consensus 222 ~~~gLg~~flrhie~a~vlI~ViD~s~ 248 (335)
T PRK12299 222 EGAGLGHRFLKHIERTRLLLHLVDIEA 248 (335)
T ss_pred ccccHHHHHHHHhhhcCEEEEEEcCCC
Confidence 888999999999999999999999864
No 23
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.88 E-value=2.7e-22 Score=204.21 Aligned_cols=89 Identities=43% Similarity=0.782 Sum_probs=81.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|+|||+||||||||+|+|+ ...+.++++||||+.|+.|++.+++. .+++|+||||++++++
T Consensus 160 adValVG~PNaGKSTLln~Lt-~~k~~vs~~p~TT~~p~~Giv~~~~~----------------~~i~~vDtPGi~~~a~ 222 (390)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVS-AAKPKVADYPFTTLVPNLGVVRVDDE----------------RSFVVADIPGLIEGAS 222 (390)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-CCcccccCCCCCccCcEEEEEEeCCC----------------cEEEEEeCCCcccccc
Confidence 489999999999999999999 55579999999999999999988651 2499999999999998
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.+++.+|+.++.+||+++||+|++
T Consensus 223 ~~~~Lg~~~l~~i~radvlL~VVD~s 248 (390)
T PRK12298 223 EGAGLGIRFLKHLERCRVLLHLIDIA 248 (390)
T ss_pred chhhHHHHHHHHHHhCCEEEEEeccC
Confidence 88889999999999999999999975
No 24
>PRK11058 GTPase HflX; Provisional
Probab=99.88 E-value=5.1e-22 Score=204.33 Aligned_cols=138 Identities=25% Similarity=0.310 Sum_probs=102.0
Q ss_pred cccccccccchhhhcCCCCcchhHHHhhhcccccCCcchhhhh---------------------hhhhhhc---cccCCc
Q 014539 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTSSR---------------------RRFSSAS---KISMSL 57 (423)
Q Consensus 2 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~---~~~~~~ 57 (423)
||||+|+|++|+|...+.++.+ .+++++.+|+++..-. .....++ .....+
T Consensus 124 velA~l~y~~prl~~~~~~l~~-----~~gg~g~~g~ge~~~e~d~r~i~~ri~~l~~~L~~~~~~r~~~r~~r~~~~~p 198 (426)
T PRK11058 124 VELAQLRHLATRLVRGWTHLER-----QKGGIGLRGPGETQLETDRRLLRNRIVQILSRLERVEKQREQGRRARIKADVP 198 (426)
T ss_pred HHHHhhhhhhhhhhccccchhh-----hcCCCCCCCCChhHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhcCCC
Confidence 7999999999999988876543 5677888888876311 0011111 112336
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+|||+||||||||||+|++.. ..+++.||+|+++..+.+.+++. ..+.+|||||+++..+
T Consensus 199 ~ValVG~~NaGKSSLlN~Lt~~~-~~v~~~~~tTld~~~~~i~l~~~----------------~~~~l~DTaG~~r~lp- 260 (426)
T PRK11058 199 TVSLVGYTNAGKSTLFNRITEAR-VYAADQLFATLDPTLRRIDVADV----------------GETVLADTVGFIRHLP- 260 (426)
T ss_pred EEEEECCCCCCHHHHHHHHhCCc-eeeccCCCCCcCCceEEEEeCCC----------------CeEEEEecCcccccCC-
Confidence 99999999999999999999554 45889999999999988877651 2589999999965422
Q ss_pred ccchh---hHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLG---NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~---~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+. ...+..+++||+++||+|+++
T Consensus 261 -~~lve~f~~tl~~~~~ADlIL~VvDaS~ 288 (426)
T PRK11058 261 -HDLVAAFKATLQETRQATLLLHVVDAAD 288 (426)
T ss_pred -HHHHHHHHHHHHHhhcCCEEEEEEeCCC
Confidence 1222 334677899999999999864
No 25
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.87 E-value=9.6e-22 Score=196.19 Aligned_cols=90 Identities=46% Similarity=0.800 Sum_probs=81.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|+|||+||||||||+|+|+ ...+.++++||||+.|+.+.+.+++ ..++.++||||++++++
T Consensus 158 adV~lvG~pnaGKSTLl~~lt-~~~~~va~y~fTT~~p~ig~v~~~~----------------~~~~~i~D~PGli~~a~ 220 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVS-AAKPKIADYPFTTLVPNLGVVRVDD----------------GRSFVIADIPGLIEGAS 220 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHh-cCCccccCCCCCccCCEEEEEEeCC----------------ceEEEEEeCCCcccCCc
Confidence 689999999999999999999 5667899999999999999998765 14699999999999998
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+++..|+.++..||++++|+|+++
T Consensus 221 ~~~gLg~~flrhierad~ll~VvD~s~ 247 (329)
T TIGR02729 221 EGAGLGHRFLKHIERTRVLLHLIDISP 247 (329)
T ss_pred ccccHHHHHHHHHHhhCEEEEEEcCcc
Confidence 888999999999999999999999864
No 26
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=7.2e-22 Score=198.11 Aligned_cols=186 Identities=19% Similarity=0.217 Sum_probs=137.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||+|+|+|...+.+++.|+||++...+.+..++ .++.||||||+.+..
T Consensus 52 ~~kV~ivG~~nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~-----------------~qi~~~DTpG~~~~~ 114 (339)
T PRK15494 52 TVSVCIIGRPNSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD-----------------TQVILYDTPGIFEPK 114 (339)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC-----------------eEEEEEECCCcCCCc
Confidence 369999999999999999999988888889999999999988888766 679999999996543
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEeccCCcc----------------eeeecccccCCcchHHHhhhhccCcHHHHHHH
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDND----------------IVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~~----------------~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~ 198 (423)
+. ...+.+.++..+++||++++|+|+.+... .+.+.|+.|.... .+...
T Consensus 115 ~~l~~~~~r~~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--------------~~~~~ 180 (339)
T PRK15494 115 GSLEKAMVRCAWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--------------YLNDI 180 (339)
T ss_pred ccHHHHHHHHHHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--------------cHHHH
Confidence 32 33444556677899999999999865321 1122333332210 01111
Q ss_pred HHHhhhccc----cchhhhhhHHHHHHHHHHHHHHhcCCCCCCC-CCChH-----HHHHHH-HHhhhhCcceEEeeeccc
Q 014539 199 MEKLKKGKA----KDSQSKLKDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAE 267 (423)
Q Consensus 199 ~~~~~~~~~----~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----e~e~ir-~~~~~t~kpi~~v~N~~~ 267 (423)
...+..... -..||+++.++..+++.+.+.+++++|+|+. .+||. -.|+|| +++..+++++||.+.+..
T Consensus 181 ~~~l~~~~~~~~i~~iSAktg~gv~eL~~~L~~~l~~~~~~~~~~~~td~~~~~~~~eiiRe~~~~~~~~EiP~~~~v~i 260 (339)
T PRK15494 181 KAFLTENHPDSLLFPISALSGKNIDGLLEYITSKAKISPWLYAEDDITDLPMRFIAAEITREQLFLNLQKELPYKLTVQT 260 (339)
T ss_pred HHHHHhcCCCcEEEEEeccCccCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCcccCceEEEEE
Confidence 111111110 0125789999999999999999999999997 46766 289999 889999999999999999
Q ss_pred cccCC
Q 014539 268 SDLAD 272 (423)
Q Consensus 268 ~d~~~ 272 (423)
+.|.+
T Consensus 261 ~~~~~ 265 (339)
T PRK15494 261 EKWED 265 (339)
T ss_pred EEEEE
Confidence 88865
No 27
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.87 E-value=2.2e-21 Score=195.25 Aligned_cols=139 Identities=30% Similarity=0.402 Sum_probs=100.6
Q ss_pred cccccccccchhhhcCCCCcchhHHHhhhcccccCCcchhh------------------------hhhhhhhhccccCCc
Q 014539 2 VRTAACNYLIPALTLLPKPMESSLFTRNANLIGVLGITTTS------------------------SRRRFSSASKISMSL 57 (423)
Q Consensus 2 ~~~a~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~ 57 (423)
|++|+|+|.+|++...+.++ .+++..++..++++.. ++...+..|.....+
T Consensus 116 v~la~l~~~l~r~~~~~~~l-----~~~~~~i~~~g~gE~~~~~~~~~i~~ri~~l~~~L~~~~~~~~~~r~~r~~~~~~ 190 (351)
T TIGR03156 116 VELAQLKYLLPRLVGGWTHL-----SRQGGGIGTRGPGETQLETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRADVP 190 (351)
T ss_pred HHHHhccchhhhhhhhHHHH-----HhhcCCCCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCc
Confidence 68999999999998865442 3455666666555421 011112222223558
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+|||+||||||||||+|++. .+.++++||+|+++....+.+++. .++.||||||++...+.
T Consensus 191 ~ValvG~~NvGKSSLln~L~~~-~~~v~~~~~tT~d~~~~~i~~~~~----------------~~i~l~DT~G~~~~l~~ 253 (351)
T TIGR03156 191 TVALVGYTNAGKSTLFNALTGA-DVYAADQLFATLDPTTRRLDLPDG----------------GEVLLTDTVGFIRDLPH 253 (351)
T ss_pred EEEEECCCCCCHHHHHHHHhCC-ceeeccCCccccCCEEEEEEeCCC----------------ceEEEEecCcccccCCH
Confidence 9999999999999999999954 478899999999999999888642 46999999999654221
Q ss_pred --ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 --GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 --~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+. ...++..+++||+++||+|+++
T Consensus 254 ~lie~-f~~tle~~~~ADlil~VvD~s~ 280 (351)
T TIGR03156 254 ELVAA-FRATLEEVREADLLLHVVDASD 280 (351)
T ss_pred HHHHH-HHHHHHHHHhCCEEEEEEECCC
Confidence 111 2345677999999999999864
No 28
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.86 E-value=5.1e-21 Score=192.85 Aligned_cols=89 Identities=34% Similarity=0.338 Sum_probs=79.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC-
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA- 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~- 135 (423)
+.|+|||+||||||||||+|+|...+.|+++|++|+|+..+.+.+.+ ..+.++||+|+....
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~-----------------~~f~lIDTgGl~~~~~ 66 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLG-----------------REFILIDTGGLDDGDE 66 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEcC-----------------ceEEEEECCCCCcCCc
Confidence 68999999999999999999999999999999999999999988876 559999999998655
Q ss_pred -CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 -SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 -~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.-.+.+..+++..+.+||++|+|||+.
T Consensus 67 ~~l~~~i~~Qa~~Ai~eADvilfvVD~~ 94 (444)
T COG1160 67 DELQELIREQALIAIEEADVILFVVDGR 94 (444)
T ss_pred hHHHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 235666788999999999999999963
No 29
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=2.7e-21 Score=172.33 Aligned_cols=87 Identities=38% Similarity=0.570 Sum_probs=66.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|.||||||||||+|||.. +.++++|++|++...|.+.+.+ .++.|+||||+..-.+
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~-~~v~n~pG~Tv~~~~g~~~~~~-----------------~~~~lvDlPG~ysl~~ 62 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAK-QKVGNWPGTTVEKKEGIFKLGD-----------------QQVELVDLPGIYSLSS 62 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTS-EEEEESTTSSSEEEEEEEEETT-----------------EEEEEEE----SSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-ceecCCCCCCeeeeeEEEEecC-----------------ceEEEEECCCcccCCC
Confidence 479999999999999999999555 8899999999999999998876 6799999999865433
Q ss_pred c--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 Q--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .+.....++. -...|++++|+|++
T Consensus 63 ~s~ee~v~~~~l~-~~~~D~ii~VvDa~ 89 (156)
T PF02421_consen 63 KSEEERVARDYLL-SEKPDLIIVVVDAT 89 (156)
T ss_dssp SSHHHHHHHHHHH-HTSSSEEEEEEEGG
T ss_pred CCcHHHHHHHHHh-hcCCCEEEEECCCC
Confidence 2 3334344443 36899999999985
No 30
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.1e-20 Score=190.82 Aligned_cols=105 Identities=25% Similarity=0.309 Sum_probs=94.5
Q ss_pred hhhhhhhhhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCc
Q 014539 42 SSRRRFSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 42 ~~~~~~~~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
.-.....+++..+.+++|+|+|.||||||||+|+|++...++|++.|+||||.....+.+.+ .
T Consensus 203 ~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G-----------------~ 265 (454)
T COG0486 203 ELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG-----------------I 265 (454)
T ss_pred HHHHhhhhhhhhhcCceEEEECCCCCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEECC-----------------E
Confidence 34445667788899999999999999999999999999999999999999999999999988 6
Q ss_pred eEEEEecCCCcCCCCcccchh-hHHhhhhhhcceEEEEEeccC
Q 014539 122 SVEFVDIAGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.++||+|+.+....-+.+| ++.+..+.+||++|+|+|+++
T Consensus 266 pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~ 308 (454)
T COG0486 266 PVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQ 308 (454)
T ss_pred EEEEEecCCcccCccHHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 699999999987777677777 888999999999999999875
No 31
>cd04938 TGS_Obg-like TGS_Obg-like: The C-terminal TGS domain of Obg-like GTPases such as those present in DRG (developmentally regulated GTP-binding protein), and GTP-binding proteins Ygr210 and YchF. The TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.84 E-value=2.8e-21 Score=151.60 Aligned_cols=65 Identities=32% Similarity=0.443 Sum_probs=59.5
Q ss_pred CEEEecCC-----------CCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCC
Q 014539 339 LRTYFTSG-----------EKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407 (423)
Q Consensus 339 li~~fT~g-----------~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gk 407 (423)
||++||+. +++.+||++++|+||+|+|++||+||+++|++|+||+ .|++|+
T Consensus 1 li~VYpv~~~~~~~~~~~g~d~~~~~~l~~g~tv~d~a~~IH~d~~~~F~~A~v~~------------------~~~vg~ 62 (76)
T cd04938 1 LIPVYPVKNIHTFTNGSGGNVFRDCVLVKKGTTVGDVARKIHGDLEKGFIEAVGGR------------------RRLEGK 62 (76)
T ss_pred CEEEEEcCCCccccCcCCCCccceeEEEcCCCCHHHHHHHHhHHHHhccEEEEEcc------------------CEEECC
Confidence 68899854 5678999999999999999999999999999999997 468999
Q ss_pred CceecCCCEEEEEe
Q 014539 408 DYIVQEGDVMLFRF 421 (423)
Q Consensus 408 dy~v~dgDii~~~f 421 (423)
||+|+|||||+|++
T Consensus 63 d~~l~d~DVv~i~~ 76 (76)
T cd04938 63 DVILGKNDILKFKT 76 (76)
T ss_pred CEEecCCCEEEEEC
Confidence 99999999999985
No 32
>PRK00089 era GTPase Era; Reviewed
Probab=99.83 E-value=2.4e-20 Score=183.26 Aligned_cols=188 Identities=28% Similarity=0.307 Sum_probs=138.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
...|+++|.||||||||+|+|+|...+.+++.|.||++...+....++ .++.|+||||+....
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~vs~~~~tt~~~i~~i~~~~~-----------------~qi~~iDTPG~~~~~ 67 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDD-----------------AQIIFVDTPGIHKPK 67 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeecCCCCCcccccEEEEEEcCC-----------------ceEEEEECCCCCCch
Confidence 357999999999999999999988888999999999999888776544 579999999997654
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEeccCCc----------------ceeeecccccCCcchHHHhhhhccCcHHHHHHH
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDN----------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKR 198 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~----------------~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~ 198 (423)
.. ++.+.......+.++|++++|+|+++.. .+..+.|+.|...+... +...
T Consensus 68 ~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~~~~------------l~~~ 135 (292)
T PRK00089 68 RALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKDKEE------------LLPL 135 (292)
T ss_pred hHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCCHHH------------HHHH
Confidence 32 3334455667789999999999997621 12334455555432221 1112
Q ss_pred HHHhhhcccc----chhhhhhHHHHHHHHHHHHHHhcCCCCCCCC-CChH-----HHHHHH-HHhhhhCcceEEeeeccc
Q 014539 199 MEKLKKGKAK----DSQSKLKDAEKAALEKIQQALMDGKPARSVT-LNDF-----ERDSIK-QLCLLTMKPIIYVANVAE 267 (423)
Q Consensus 199 ~~~~~~~~~~----~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~-----e~e~ir-~~~~~t~kpi~~v~N~~~ 267 (423)
...+...... ..||+++.++..+++.+.+.+++++++|+.+ .|+. -.|+|| +++..+++++||.+.+..
T Consensus 136 ~~~l~~~~~~~~i~~iSA~~~~gv~~L~~~L~~~l~~~~~~y~~~~~td~~~r~~~~EiiRe~~~~~l~~e~p~~~~v~~ 215 (292)
T PRK00089 136 LEELSELMDFAEIVPISALKGDNVDELLDVIAKYLPEGPPYYPEDQITDRPERFLAAEIIREKLLRLLGDELPYSVAVEI 215 (292)
T ss_pred HHHHHhhCCCCeEEEecCCCCCCHHHHHHHHHHhCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhhCCccCCceEEEEE
Confidence 2222211111 1257888899999999999999999999863 5554 288899 788889999999999998
Q ss_pred cccCC
Q 014539 268 SDLAD 272 (423)
Q Consensus 268 ~d~~~ 272 (423)
++|.+
T Consensus 216 ~~~~~ 220 (292)
T PRK00089 216 EKFEE 220 (292)
T ss_pred EEEEE
Confidence 87753
No 33
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.82 E-value=2.3e-20 Score=178.37 Aligned_cols=201 Identities=18% Similarity=0.188 Sum_probs=146.5
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++||+||.||||||||.|.+.|.+.+++|.++.||+..+.|++.-++ +|++|+||||++.
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~e-----------------TQlvf~DTPGlvs 132 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGE-----------------TQLVFYDTPGLVS 132 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCc-----------------eEEEEecCCcccc
Confidence 34589999999999999999999999999999999999999999998887 8999999999986
Q ss_pred CCCc-ccchhhH----HhhhhhhcceEEEEEeccCCcc-----------------eeeecccccCCcchHHHhh--hhcc
Q 014539 134 GASQ-GEGLGNK----FLSHIREVDSILQVVRCFEDND-----------------IVHVNGKVDPKSDVDVINL--ELVF 189 (423)
Q Consensus 134 ~~~~-~~~l~~~----~l~~ir~aD~il~Vvd~~~~~~-----------------~~~~~~~~dp~~d~~~i~~--El~l 189 (423)
..+. ...+... .+..+..||+++.|+|+++.-. .+.+.|++|.+.....+.. ++.-
T Consensus 133 ~~~~r~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 133 KKMHRRHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred cchhhhHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhcc
Confidence 5432 3333333 3566888999999999985321 2335677777655443311 0111
Q ss_pred CcHHHHHH-HHHHhhhcc--c---------cc--------hhhhhhHHHHHHHHHHHHHHhcCCCCCCCC-CChH---H-
Q 014539 190 SDLDQIEK-RMEKLKKGK--A---------KD--------SQSKLKDAEKAALEKIQQALMDGKPARSVT-LNDF---E- 244 (423)
Q Consensus 190 ~d~~~~e~-~~~~~~~~~--~---------~~--------~sa~~~~~~~~ll~~i~~~L~~~~~~~~~~-~t~~---e- 244 (423)
+ +.+.+ .++..++.. + +. .||..+.++.++-+.+...++.|+|.|+.+ .|++ +
T Consensus 213 ~--g~l~~~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T~~s~e~l 290 (379)
T KOG1423|consen 213 N--GELAKLKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVTEESPEFL 290 (379)
T ss_pred c--cccchhhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCCCCCCcccccccCHHHH
Confidence 1 11111 111111111 1 00 158999999999999999999999999874 4544 2
Q ss_pred -HHHHH-HHhhhhCcceEEeeeccccccCCC
Q 014539 245 -RDSIK-QLCLLTMKPIIYVANVAESDLADP 273 (423)
Q Consensus 245 -~e~ir-~~~~~t~kpi~~v~N~~~~d~~~~ 273 (423)
.+++| +++..+..++||.+.+...+|.+.
T Consensus 291 ~~e~VReklLd~~pqEVPY~lq~~i~~w~e~ 321 (379)
T KOG1423|consen 291 CSESVREKLLDHLPQEVPYNLQVRILSWKER 321 (379)
T ss_pred HHHHHHHHHHhhCccccCcceEEEEEEeeec
Confidence 78888 788889999999999888788654
No 34
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.79 E-value=4.6e-18 Score=152.21 Aligned_cols=89 Identities=46% Similarity=0.820 Sum_probs=74.0
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
.|++||.||||||||+|+|++ ....++.+|++|++++.+.+.+++. .++.||||||+......
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~-~~~~v~~~~~~t~~~~~~~~~~~~~----------------~~~~l~DtpG~~~~~~~ 64 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISN-AKPKIADYPFTTLVPNLGVVRVDDG----------------RSFVVADIPGLIEGASE 64 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhc-CCccccCCCccccCCcceEEEcCCC----------------CeEEEEecCcccCcccc
Confidence 589999999999999999994 4457888999999999998876551 36999999999755444
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+...++..++.||++++|+|+++
T Consensus 65 ~~~~~~~~~~~~~~~d~vi~v~D~~~ 90 (170)
T cd01898 65 GKGLGHRFLRHIERTRLLLHVIDLSG 90 (170)
T ss_pred cCCchHHHHHHHHhCCEEEEEEecCC
Confidence 44566788888899999999999864
No 35
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.75 E-value=1.4e-17 Score=149.63 Aligned_cols=86 Identities=58% Similarity=1.009 Sum_probs=72.0
Q ss_pred EEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecC-CccchhhccccccccccCceEEEEecCCCcCCCCccc
Q 014539 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 139 (423)
|+|.||||||||+|+|++... .++++|++|++++.+.+.++ + .++.+|||||+.......+
T Consensus 1 iiG~~~~GKStll~~l~~~~~-~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 62 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKP-KVANYPFTTLEPNLGVVEVPDG-----------------ARIQVADIPGLIEGASEGR 62 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCc-cccCCCceeecCcceEEEcCCC-----------------CeEEEEeccccchhhhcCC
Confidence 589999999999999996544 67889999999999888776 4 4699999999976555555
Q ss_pred chhhHHhhhhhhcceEEEEEeccCC
Q 014539 140 GLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 140 ~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.+...++..++.+|++++|+|+++.
T Consensus 63 ~~~~~~~~~~~~~d~ii~v~d~~~~ 87 (176)
T cd01881 63 GLGNQFLAHIRRADAILHVVDASED 87 (176)
T ss_pred CccHHHHHHHhccCEEEEEEeccCC
Confidence 6667888899999999999998653
No 36
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.73 E-value=9e-17 Score=162.30 Aligned_cols=92 Identities=24% Similarity=0.310 Sum_probs=79.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
...+|+|||+||||||||+|+|+|+.++.+++.|+||+|+....+...+ ..+.|+||+|+.+.
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~-----------------~~~~liDTAGiRrk 239 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDG-----------------RKYVLIDTAGIRRK 239 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEecCCCCccccceeeeEEECC-----------------eEEEEEECCCCCcc
Confidence 4689999999999999999999999999999999999999999998877 45999999999754
Q ss_pred CCccc---ch-hhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGE---GL-GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~---~l-~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..-.+ .+ ..+.+..+..||++++|+|+++
T Consensus 240 ~ki~e~~E~~Sv~rt~~aI~~a~vvllviDa~~ 272 (444)
T COG1160 240 GKITESVEKYSVARTLKAIERADVVLLVIDATE 272 (444)
T ss_pred cccccceEEEeehhhHhHHhhcCEEEEEEECCC
Confidence 43222 22 2677899999999999999964
No 37
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.71 E-value=1e-16 Score=166.49 Aligned_cols=98 Identities=26% Similarity=0.362 Sum_probs=78.8
Q ss_pred hhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 49 ~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
+++....+++|+++|+||||||||+|+|++...+.+++.|+||+++....+.+++ ..+.+|||
T Consensus 208 ~~~~~~~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~i~l~DT 270 (449)
T PRK05291 208 QGEILREGLKVVIAGRPNVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG-----------------IPLRLIDT 270 (449)
T ss_pred HHHHhhcCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC-----------------eEEEEEeC
Confidence 4445556799999999999999999999977777899999999999988887765 45899999
Q ss_pred CCCcCCCCcccchh-hHHhhhhhhcceEEEEEeccC
Q 014539 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 129 pGl~~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
||+.......+..+ .+.+..+++||++++|+|+++
T Consensus 271 ~G~~~~~~~ie~~gi~~~~~~~~~aD~il~VvD~s~ 306 (449)
T PRK05291 271 AGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306 (449)
T ss_pred CCCCCCccHHHHHHHHHHHHHHHhCCEEEEEecCCC
Confidence 99965433222222 346778999999999999864
No 38
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.68 E-value=3.3e-16 Score=151.94 Aligned_cols=91 Identities=24% Similarity=0.345 Sum_probs=72.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|.|.|+||||||||++++| .....+++|||||...+.|.+..+.. .++++||||+...
T Consensus 167 ~~pTivVaG~PNVGKSSlv~~lT-~AkpEvA~YPFTTK~i~vGhfe~~~~-----------------R~QvIDTPGlLDR 228 (346)
T COG1084 167 DLPTIVVAGYPNVGKSSLVRKLT-TAKPEVAPYPFTTKGIHVGHFERGYL-----------------RIQVIDTPGLLDR 228 (346)
T ss_pred CCCeEEEecCCCCcHHHHHHHHh-cCCCccCCCCccccceeEeeeecCCc-----------------eEEEecCCcccCC
Confidence 34799999999999999999999 88899999999999999999988773 4999999999643
Q ss_pred -CCcccchhhHHhhhhhh-cceEEEEEeccC
Q 014539 135 -ASQGEGLGNKFLSHIRE-VDSILQVVRCFE 163 (423)
Q Consensus 135 -~~~~~~l~~~~l~~ir~-aD~il~Vvd~~~ 163 (423)
.++...+..+...++++ +++|+|++|.|+
T Consensus 229 Pl~ErN~IE~qAi~AL~hl~~~IlF~~D~Se 259 (346)
T COG1084 229 PLEERNEIERQAILALRHLAGVILFLFDPSE 259 (346)
T ss_pred ChHHhcHHHHHHHHHHHHhcCeEEEEEcCcc
Confidence 23222333444444444 578999999864
No 39
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.68 E-value=1.3e-16 Score=134.97 Aligned_cols=88 Identities=38% Similarity=0.494 Sum_probs=74.2
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+|+|.||||||||+|+|++...+.+++.|++|+++..+.+.+.+ ..+.|+||||+..+...
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~~~~vDtpG~~~~~~~ 63 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNN-----------------KKFILVDTPGINDGESQ 63 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETT-----------------EEEEEEESSSCSSSSHH
T ss_pred CEEEECCCCCCHHHHHHHHhccccccccccccceeeeeeeeeeece-----------------eeEEEEeCCCCcccchh
Confidence 6999999999999999999976688999999999999887777765 56889999999776544
Q ss_pred cc--chhhHHhhhhhhcceEEEEEecc
Q 014539 138 GE--GLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 ~~--~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. ....+++..++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~~~d~ii~vv~~~ 90 (116)
T PF01926_consen 64 DNDGKEIRKFLEQISKSDLIIYVVDAS 90 (116)
T ss_dssp HHHHHHHHHHHHHHCTESEEEEEEETT
T ss_pred hHHHHHHHHHHHHHHHCCEEEEEEECC
Confidence 22 24457888899999999999964
No 40
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.67 E-value=2.5e-15 Score=134.28 Aligned_cols=89 Identities=25% Similarity=0.330 Sum_probs=63.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|++ ....++++|++|.++..+.....+ ..+.+|||||+.....
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~~ 62 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTR-AKPEVAPYPFTTKSLFVGHFDYKY-----------------LRWQVIDTPGLLDRPL 62 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhc-CCCccCCCCCcccceeEEEEccCc-----------------eEEEEEECCCcCCccc
Confidence 4799999999999999999995 445567789999999888776654 5699999999854322
Q ss_pred ccc-chhhHHhhhh-hhcceEEEEEeccC
Q 014539 137 QGE-GLGNKFLSHI-REVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~-~l~~~~l~~i-r~aD~il~Vvd~~~ 163 (423)
... .+....+..+ ..+|++++|+|+++
T Consensus 63 ~~~~~~~~~~~~~~~~~~d~~l~v~d~~~ 91 (168)
T cd01897 63 EERNTIEMQAITALAHLRAAVLFLFDPSE 91 (168)
T ss_pred cCCchHHHHHHHHHHhccCcEEEEEeCCc
Confidence 111 1111222222 23689999999864
No 41
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.66 E-value=1.1e-15 Score=158.19 Aligned_cols=97 Identities=28% Similarity=0.408 Sum_probs=79.1
Q ss_pred hccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 50 ~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
++....+++|+++|.||||||||+|+|++...+.++++|+||++...+.+.+++ ..+.+||||
T Consensus 197 ~~~~~~g~kVvIvG~~nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g-----------------~~v~l~DTa 259 (442)
T TIGR00450 197 LEKLDDGFKLAIVGSPNVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG-----------------ILIKLLDTA 259 (442)
T ss_pred HHHhhcCCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC-----------------EEEEEeeCC
Confidence 355667799999999999999999999977778899999999999988887766 458999999
Q ss_pred CCcCCCCcccchh-hHHhhhhhhcceEEEEEeccC
Q 014539 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 130 Gl~~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
|+.......+..+ .+....+++||++++|+|+++
T Consensus 260 G~~~~~~~ie~~gi~~~~~~~~~aD~il~V~D~s~ 294 (442)
T TIGR00450 260 GIREHADFVERLGIEKSFKAIKQADLVIYVLDASQ 294 (442)
T ss_pred CcccchhHHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 9965433222222 456678899999999999864
No 42
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.66 E-value=8.8e-16 Score=161.50 Aligned_cols=87 Identities=34% Similarity=0.534 Sum_probs=74.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC--C
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK--G 134 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~--~ 134 (423)
.+|+++|.||||||||||+|| +....++|+|++|++...|.+...+ .++.++|+||... +
T Consensus 4 ~~valvGNPNvGKTtlFN~LT-G~~q~VgNwpGvTVEkkeg~~~~~~-----------------~~i~ivDLPG~YSL~~ 65 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALT-GANQKVGNWPGVTVEKKEGKLKYKG-----------------HEIEIVDLPGTYSLTA 65 (653)
T ss_pred ceEEEecCCCccHHHHHHHHh-ccCceecCCCCeeEEEEEEEEEecC-----------------ceEEEEeCCCcCCCCC
Confidence 569999999999999999999 7778999999999999999998887 5599999999963 3
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.++...+.|+.. ..+|+|+.|+|++
T Consensus 66 ~S~DE~Var~~ll~-~~~D~ivnVvDAt 92 (653)
T COG0370 66 YSEDEKVARDFLLE-GKPDLIVNVVDAT 92 (653)
T ss_pred CCchHHHHHHHHhc-CCCCEEEEEcccc
Confidence 45566676777663 5679999999985
No 43
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.65 E-value=2.6e-15 Score=155.18 Aligned_cols=88 Identities=30% Similarity=0.341 Sum_probs=73.5
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+|||+||||||||||+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+......
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~-----------------~~~~liDTpG~~~~~~~ 63 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGG-----------------REFILIDTGGIEEDDDG 63 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEECC-----------------eEEEEEECCCCCCcchh
Confidence 5899999999999999999988888899999999999999887766 45999999998543221
Q ss_pred -ccchhhHHhhhhhhcceEEEEEecc
Q 014539 138 -GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 -~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.+..++...+++||++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~~ad~vl~vvD~~ 89 (429)
T TIGR03594 64 LDKQIREQAEIAIEEADVILFVVDGR 89 (429)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCC
Confidence 2334466778899999999999975
No 44
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.65 E-value=3.3e-15 Score=138.71 Aligned_cols=94 Identities=29% Similarity=0.398 Sum_probs=69.7
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|+|+|.||||||||+|+|++ ....+.+.+++|.++..+.+.+++. ..+.+|||||+.
T Consensus 38 ~~~~~~I~iiG~~g~GKStLl~~l~~-~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~i~Dt~G~~ 100 (204)
T cd01878 38 RSGIPTVALVGYTNAGKSTLFNALTG-ADVYAEDQLFATLDPTTRRLRLPDG----------------REVLLTDTVGFI 100 (204)
T ss_pred hcCCCeEEEECCCCCCHHHHHHHHhc-chhccCCccceeccceeEEEEecCC----------------ceEEEeCCCccc
Confidence 34558999999999999999999994 4456677889999988887766541 269999999996
Q ss_pred CCCCccc-chhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGE-GLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~-~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+... ......+..++.+|++++|+|+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~ 132 (204)
T cd01878 101 RDLPHQLVEAFRSTLEEVAEADLLLHVVDASD 132 (204)
T ss_pred cCCCHHHHHHHHHHHHHHhcCCeEEEEEECCC
Confidence 5432210 111223455789999999999864
No 45
>cd01666 TGS_DRG_C TGS_DRG_C: DRG (developmentally regulated GTP-binding protein) represents a family of GTP-binding proteins that includes two members, DRG1 and DRG2. DRG1 and DRG2 have a C-terminal TGS domain (named after the ThrRS, GTPase, and SpoT proteins where it occurs) with a predominantly beta-sheet structure. The function of TGS is unknown but its presence in two types of regulatory proteins (the DRG GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.65 E-value=1.9e-16 Score=123.64 Aligned_cols=70 Identities=21% Similarity=0.265 Sum_probs=62.8
Q ss_pred CEEEecCCCC----CcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCC
Q 014539 339 LRTYFTSGEK----ETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEG 414 (423)
Q Consensus 339 li~~fT~g~~----e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dg 414 (423)
||++||+.+. ..++.++++|+|+.|+|.+||+||.+.|++|.||+-+ ++..| |++|.||+|+||
T Consensus 1 lirvytk~~g~~~d~~~~liL~~GaTV~D~a~~iH~di~~~f~~A~v~g~s----------~~~~g--q~Vgl~~~L~d~ 68 (75)
T cd01666 1 LIRVYTKPKGQEPDFDEPVILRRGSTVEDVCNKIHKDLVKQFKYALVWGSS----------VKHSP--QRVGLDHVLEDE 68 (75)
T ss_pred CEEEEeCCCCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHhCCeeEEeccC----------CcCCC--eECCCCCEecCC
Confidence 6899999864 4689999999999999999999999999999999855 66656 479999999999
Q ss_pred CEEEEE
Q 014539 415 DVMLFR 420 (423)
Q Consensus 415 Dii~~~ 420 (423)
|||+|-
T Consensus 69 DvVeI~ 74 (75)
T cd01666 69 DVVQIV 74 (75)
T ss_pred CEEEEe
Confidence 999984
No 46
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.63 E-value=3.8e-15 Score=132.87 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=60.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|++. .......|.++.+.....+..++.. ..+.+|||||...
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~--- 64 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRN-EFNLDSKSTIGVEFATRSIQIDGKT---------------IKAQIWDTAGQER--- 64 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHH---
Confidence 68999999999999999999944 4444556766666555556555422 4589999999742
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+.......+++||++++|+|++
T Consensus 65 ----~~~~~~~~~~~~~~~i~v~d~~ 86 (165)
T cd01868 65 ----YRAITSAYYRGAVGALLVYDIT 86 (165)
T ss_pred ----HHHHHHHHHCCCCEEEEEEECc
Confidence 2223345678999999999975
No 47
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.63 E-value=1.2e-14 Score=128.95 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=64.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.||||||||+|+|+ +.....+..|++|.+.....+.+++.. .++.+|||||...
T Consensus 1 ~ki~liG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~D~~G~~~--- 61 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFM-YDTFDNQYQATIGIDFLSKTMYLEDKT---------------VRLQLWDTAGQER--- 61 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHH-cCCCCccCCCceeeeEEEEEEEECCEE---------------EEEEEEECCCcHH---
Confidence 379999999999999999999 444455678888888877777766532 4689999999632
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
........++++|++++|+|+.
T Consensus 62 ----~~~~~~~~~~~~~~ii~v~d~~ 83 (161)
T cd01861 62 ----FRSLIPSYIRDSSVAVVVYDIT 83 (161)
T ss_pred ----HHHHHHHHhccCCEEEEEEECc
Confidence 2233456689999999999974
No 48
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.63 E-value=7.4e-15 Score=136.54 Aligned_cols=91 Identities=13% Similarity=0.232 Sum_probs=59.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+|+|.||||||||+|+++++. ......|.++.+.....+.+.+.. ..+.+|||||+.....
T Consensus 1 ~kI~ivG~~~vGKTsLi~~~~~~~-f~~~~~pt~~~~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQE-FPEEYIPTEHRRLYRPAVVLSGRV---------------YDLHILDVPNMQRYPG 64 (198)
T ss_pred CEEEEECCCCCcHHHHHHHHHcCC-CCcccCCccccccceeEEEECCEE---------------EEEEEEeCCCcccCCc
Confidence 489999999999999999999543 333345555544433344444422 4588999999864321
Q ss_pred c-ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~-~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. +..........++.||++++|+|+++
T Consensus 65 ~~~~e~~~~~~~~~~~ad~iilv~D~~~ 92 (198)
T cd04142 65 TAGQEWMDPRFRGLRNSRAFILVYDICS 92 (198)
T ss_pred cchhHHHHHHHhhhccCCEEEEEEECCC
Confidence 1 11111223456799999999999753
No 49
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=99.63 E-value=4.2e-16 Score=150.30 Aligned_cols=99 Identities=25% Similarity=0.320 Sum_probs=81.4
Q ss_pred hhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 49 ~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
.++.....+-|++|||+|+|||||+|+|| .......+..|.|.||.......|.. ..+.|.||
T Consensus 171 ~gr~~~s~pviavVGYTNaGKsTLikaLT-~Aal~p~drLFATLDpT~h~a~Lpsg----------------~~vlltDT 233 (410)
T KOG0410|consen 171 VGREGESSPVIAVVGYTNAGKSTLIKALT-KAALYPNDRLFATLDPTLHSAHLPSG----------------NFVLLTDT 233 (410)
T ss_pred hccccCCCceEEEEeecCccHHHHHHHHH-hhhcCccchhheeccchhhhccCCCC----------------cEEEEeec
Confidence 44555667899999999999999999999 66666778899999999988888873 35899999
Q ss_pred CCCcCCCCcccchhh---HHhhhhhhcceEEEEEeccCCcc
Q 014539 129 AGLVKGASQGEGLGN---KFLSHIREVDSILQVVRCFEDND 166 (423)
Q Consensus 129 pGl~~~~~~~~~l~~---~~l~~ir~aD~il~Vvd~~~~~~ 166 (423)
-|++..-+ .++.. .+|.++.+||+|+||+|.|.+..
T Consensus 234 vGFisdLP--~~LvaAF~ATLeeVaeadlllHvvDiShP~a 272 (410)
T KOG0410|consen 234 VGFISDLP--IQLVAAFQATLEEVAEADLLLHVVDISHPNA 272 (410)
T ss_pred hhhhhhCc--HHHHHHHHHHHHHHhhcceEEEEeecCCccH
Confidence 99986554 44554 44788999999999999998753
No 50
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=8.4e-16 Score=155.45 Aligned_cols=98 Identities=31% Similarity=0.416 Sum_probs=85.4
Q ss_pred hhhhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEE
Q 014539 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (423)
Q Consensus 47 ~~~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (423)
.........+++|+|+|+||||||||+|+|+....++|++.|+||+|.....+++.+ ..+.|+
T Consensus 259 ~~~~e~lq~gl~iaIvGrPNvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G-----------------~~v~L~ 321 (531)
T KOG1191|consen 259 ADEIERLQSGLQIAIVGRPNVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG-----------------VPVRLS 321 (531)
T ss_pred hhhHHHhhcCCeEEEEcCCCCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC-----------------eEEEEE
Confidence 444556677899999999999999999999999999999999999999999999877 569999
Q ss_pred ecCCCcC-CCCcccchh-hHHhhhhhhcceEEEEEec
Q 014539 127 DIAGLVK-GASQGEGLG-NKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 127 DtpGl~~-~~~~~~~l~-~~~l~~ir~aD~il~Vvd~ 161 (423)
||+|+.+ ..+..+.++ ++....+++||+|++|+|+
T Consensus 322 DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda 358 (531)
T KOG1191|consen 322 DTAGIREESNDGIEALGIERARKRIERADVILLVVDA 358 (531)
T ss_pred eccccccccCChhHHHhHHHHHHHHhhcCEEEEEecc
Confidence 9999987 334455565 7788889999999999998
No 51
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.62 E-value=4.1e-15 Score=131.78 Aligned_cols=83 Identities=22% Similarity=0.289 Sum_probs=60.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcce--ecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~--vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
|.|+++|.||||||||+|+|++..... ....+++|++.....+.+++ ..++.+|||||..
T Consensus 1 ~~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~~DtpG~~-- 62 (164)
T cd04171 1 MIIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS----------------GKRLGFIDVPGHE-- 62 (164)
T ss_pred CEEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC----------------CcEEEEEECCChH--
Confidence 469999999999999999999643222 22346778777666555541 1469999999973
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.......++.||++++|+|+.
T Consensus 63 -----~~~~~~~~~~~~ad~ii~V~d~~ 85 (164)
T cd04171 63 -----KFIKNMLAGAGGIDLVLLVVAAD 85 (164)
T ss_pred -----HHHHHHHhhhhcCCEEEEEEECC
Confidence 23344566788999999999975
No 52
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.62 E-value=8.7e-15 Score=153.28 Aligned_cols=90 Identities=26% Similarity=0.267 Sum_probs=73.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+|||.||||||||||+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 101 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNG-----------------RRFTVVDTGGWEPDAK 101 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECC-----------------cEEEEEeCCCcCCcch
Confidence 79999999999999999999977777889999999999888877765 4589999999863222
Q ss_pred c-ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~-~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ...+..++..++++||++|+|+|+++
T Consensus 102 ~~~~~~~~~~~~~~~~aD~il~VvD~~~ 129 (472)
T PRK03003 102 GLQASVAEQAEVAMRTADAVLFVVDATV 129 (472)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 1 22334556678999999999999863
No 53
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.61 E-value=8.1e-15 Score=153.52 Aligned_cols=92 Identities=25% Similarity=0.401 Sum_probs=72.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++...+.+++.|+||+++....+.+.+ .++.||||||+.+.
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~-----------------~~~~l~DTaG~~~~ 272 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGG-----------------KTWRFVDTAGLRRR 272 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEECC-----------------EEEEEEECCCcccc
Confidence 3589999999999999999999977777889999999999988887765 45889999999654
Q ss_pred CCcccc---hh-hHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEG---LG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~---l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+ +. ......++.||++++|+|+++
T Consensus 273 ~~~~~~~e~~~~~~~~~~i~~ad~vilV~Da~~ 305 (472)
T PRK03003 273 VKQASGHEYYASLRTHAAIEAAEVAVVLIDASE 305 (472)
T ss_pred ccccchHHHHHHHHHHHHHhcCCEEEEEEeCCC
Confidence 332111 11 122346789999999999864
No 54
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.60 E-value=9.9e-15 Score=150.84 Aligned_cols=91 Identities=25% Similarity=0.322 Sum_probs=74.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||+|||||+|+|++.....+++.|+||+++....+...+ ..+.+|||||+.+.
T Consensus 171 ~~~~v~ivG~~~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~liDT~G~~~~ 233 (429)
T TIGR03594 171 GPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNG-----------------KKYLLIDTAGIRRK 233 (429)
T ss_pred CceEEEEECCCCCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEECC-----------------cEEEEEECCCcccc
Confidence 3479999999999999999999987778889999999999888877655 35899999999765
Q ss_pred CCcccchh----hHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLG----NKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~----~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+..+.+. .+.+..++.||++++|+|++
T Consensus 234 ~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~ 265 (429)
T TIGR03594 234 GKVTEGVEKYSVLRTLKAIERADVVLLVLDAT 265 (429)
T ss_pred ccchhhHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 54322221 34467899999999999985
No 55
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.59 E-value=1.8e-14 Score=157.81 Aligned_cols=90 Identities=23% Similarity=0.239 Sum_probs=73.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+|+|+||||||||||+|+|...+.+++.|++|++...+.....+ ..+.+|||||+....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~ 337 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG-----------------TDFKLVDTGGWEADV 337 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC-----------------EEEEEEeCCCcCCCC
Confidence 368999999999999999999987778899999999998887776655 468999999986432
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. ...+.+++...++.||++++|+|+.
T Consensus 338 ~~~~~~~~~~~~~~~~~aD~iL~VvDa~ 365 (712)
T PRK09518 338 EGIDSAIASQAQIAVSLADAVVFVVDGQ 365 (712)
T ss_pred ccHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 21 2234456677899999999999985
No 56
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.59 E-value=9.9e-15 Score=151.21 Aligned_cols=90 Identities=30% Similarity=0.301 Sum_probs=74.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+|||.||||||||+|+|++...+.+++.|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~-----------------~~~~liDT~G~~~~~~ 64 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG-----------------REFILIDTGGIEPDDD 64 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC-----------------cEEEEEECCCCCCcch
Confidence 58999999999999999999987778899999999999998887765 4699999999975222
Q ss_pred -cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 -QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 -~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+..++..++++||++++|+|+.+
T Consensus 65 ~~~~~~~~~~~~~~~~ad~il~vvd~~~ 92 (435)
T PRK00093 65 GFEKQIREQAELAIEEADVILFVVDGRA 92 (435)
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 122244556778999999999999853
No 57
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.59 E-value=1.2e-14 Score=136.45 Aligned_cols=85 Identities=15% Similarity=0.157 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+|+ +........|+.+.+.....+.+++.. ...+.+|||||...+.
T Consensus 1 ~Ki~ivG~~~vGKSsLi~~l~-~~~~~~~~~~T~~~d~~~~~i~~~~~~--------------~~~~~i~Dt~G~~~~~- 64 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFA-KEGFGKSYKQTIGLDFFSKRVTLPGNL--------------NVTLQVWDIGGQSIGG- 64 (215)
T ss_pred CEEEEECcCCCCHHHHHHHHh-cCCCCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCcHHHH-
Confidence 489999999999999999999 444444445666666655556655421 2468999999963321
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......+++||++++|+|+++
T Consensus 65 ------~l~~~~~~~ad~iilV~D~t~ 85 (215)
T cd04109 65 ------KMLDKYIYGAHAVFLVYDVTN 85 (215)
T ss_pred ------HHHHHHhhcCCEEEEEEECCC
Confidence 234456889999999999753
No 58
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.59 E-value=4.5e-14 Score=123.79 Aligned_cols=91 Identities=25% Similarity=0.305 Sum_probs=71.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+++|+++|.||+|||||+|+|++...+.+++.|++|.++..+.+...+ ..+.+|||||+....
T Consensus 1 ~~~i~l~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~ 63 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG-----------------IPVRLIDTAGIRETE 63 (157)
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC-----------------EEEEEEECCCcCCCc
Confidence 468999999999999999999977767788999999998877766544 458999999986543
Q ss_pred Ccc-cchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQG-EGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~-~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... ....+.....++++|++++|+|+++
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~ 92 (157)
T cd04164 64 DEIEKIGIERAREAIEEADLVLFVIDASR 92 (157)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 321 1122456677889999999999863
No 59
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.59 E-value=1.3e-14 Score=129.70 Aligned_cols=84 Identities=15% Similarity=0.177 Sum_probs=59.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|++++ ........|..+.+.....+.+.+.. .++.+|||||....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~-- 64 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFAD-DTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERF-- 64 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhc-CCCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcHhH--
Confidence 6899999999999999999994 43333444555544444555554422 46899999996432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......++++|++++|+|+++
T Consensus 65 -----~~~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 65 -----RTITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred -----HHHHHHHhCcCCEEEEEEECcC
Confidence 2234566789999999999753
No 60
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.59 E-value=7.8e-14 Score=123.85 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=58.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|++.+.. . ++.++.++.+.......+.+. ..++.+|||||.....
T Consensus 3 ~ki~i~G~~~~GKtsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~- 64 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSY-F-VTDYDPTIEDSYTKQCEIDGQ---------------WAILDILDTAGQEEFS- 64 (164)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceEEEEEEECCE---------------EEEEEEEECCCCcchh-
Confidence 699999999999999999999543 2 445555554444433444331 1458899999975332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++.+|++++|+|+++
T Consensus 65 ------~~~~~~~~~~~~~ilv~d~~~ 85 (164)
T cd04145 65 ------AMREQYMRTGEGFLLVFSVTD 85 (164)
T ss_pred ------HHHHHHHhhCCEEEEEEECCC
Confidence 234456789999999999753
No 61
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.58 E-value=9.7e-15 Score=160.05 Aligned_cols=89 Identities=27% Similarity=0.439 Sum_probs=68.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||||+||| ....++++|++|++...+.+..++ .++.++||||+....
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg-~~~~vgn~pGvTve~k~g~~~~~~-----------------~~i~lvDtPG~ysl~ 64 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTG-ARQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhC-CCCccCCCCCceEeeEEEEEEcCc-----------------eEEEEEECCCccccc
Confidence 46899999999999999999995 456899999999999999887765 569999999996543
Q ss_pred Cc--ccchhhHHh-hh--hhhcceEEEEEecc
Q 014539 136 SQ--GEGLGNKFL-SH--IREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~--~~~l~~~~l-~~--ir~aD~il~Vvd~~ 162 (423)
.. ...+.++.. .. ...+|++++|+|++
T Consensus 65 ~~~~~~s~~E~i~~~~l~~~~aD~vI~VvDat 96 (772)
T PRK09554 65 TISSQTSLDEQIACHYILSGDADLLINVVDAS 96 (772)
T ss_pred cccccccHHHHHHHHHHhccCCCEEEEEecCC
Confidence 21 112222221 12 24799999999975
No 62
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.58 E-value=3.5e-14 Score=127.40 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=95.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.||||||||+|++++ ........|..+.+.....+.+++.. ..+.+|||||....
T Consensus 3 ~~ki~vvG~~~~GKSsl~~~~~~-~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~g~~~~- 65 (167)
T cd01867 3 LFKLLLIGDSGVGKSCLLLRFSE-DSFNPSFISTIGIDFKIRTIELDGKK---------------IKLQIWDTAGQERF- 65 (167)
T ss_pred ceEEEEECCCCCCHHHHHHHHhh-CcCCcccccCccceEEEEEEEECCEE---------------EEEEEEeCCchHHH-
Confidence 37999999999999999999994 44433334444444333444444422 46899999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......+++||++++|+|+.+... +. .
T Consensus 66 ------~~~~~~~~~~ad~~i~v~d~~~~~s-------------~~---------------~------------------ 93 (167)
T cd01867 66 ------RTITTAYYRGAMGIILVYDITDEKS-------------FE---------------N------------------ 93 (167)
T ss_pred ------HHHHHHHhCCCCEEEEEEECcCHHH-------------HH---------------h------------------
Confidence 2234466889999999999742110 11 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +.+. .....++..+++...+.++++
T Consensus 94 --~~~~~~~i~~~------------------------~~~~~p~iiv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 144 (167)
T cd01867 94 --IRNWMRNIEEH------------------------ASEDVERMLVGNKCD--MEEK-RVVSKEEGEALADEYGIKFLE 144 (167)
T ss_pred --HHHHHHHHHHh------------------------CCCCCcEEEEEECcc--cccc-cCCCHHHHHHHHHHcCCEEEE
Confidence 00011111000 014579999999994 4432 233456677777777788999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 145 ~Sa~~~~~v~~ 155 (167)
T cd01867 145 TSAKANINVEE 155 (167)
T ss_pred EeCCCCCCHHH
Confidence 99998766533
No 63
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.58 E-value=3.7e-14 Score=127.00 Aligned_cols=151 Identities=20% Similarity=0.187 Sum_probs=93.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccce-EEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.+|||||||+++++++ .. ...+|.|+.... ...+.+.+.. ..+.+|||||...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~-- 63 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEK-KF-MADCPHTIGVEFGTRIIEVNGQK---------------IKLQIWDTAGQER-- 63 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcC-CC-CCCCCcccceeEEEEEEEECCEE---------------EEEEEEECCCcHH--
Confidence 68999999999999999999943 32 233443332221 2223333322 4689999999742
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+.......+++||++++|+|+++... ++.+ .
T Consensus 64 -----~~~~~~~~~~~~~~~ilv~d~~~~~s-------------~~~~---------------~---------------- 94 (166)
T cd04122 64 -----FRAVTRSYYRGAAGALMVYDITRRST-------------YNHL---------------S---------------- 94 (166)
T ss_pred -----HHHHHHHHhcCCCEEEEEEECCCHHH-------------HHHH---------------H----------------
Confidence 22234567899999999999753211 1100 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
..++.+.. . .....|+++++||.| +... .....+++.++++..+.+++.
T Consensus 95 ----~~~~~~~~-----------------------~-~~~~~~iiiv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~e 143 (166)
T cd04122 95 ----SWLTDARN-----------------------L-TNPNTVIFLIGNKAD--LEAQ-RDVTYEEAKQFADENGLLFLE 143 (166)
T ss_pred ----HHHHHHHH-----------------------h-CCCCCeEEEEEECcc--cccc-cCcCHHHHHHHHHHcCCEEEE
Confidence 00110000 0 013568999999994 4432 233456777888777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 144 ~Sa~~~~~i~e 154 (166)
T cd04122 144 CSAKTGENVED 154 (166)
T ss_pred EECCCCCCHHH
Confidence 99999877643
No 64
>cd01669 TGS_Ygr210_C TGS_Ygr210_C: The C-terminal TGS domain of Ygr210 GTP-binding protein which is a member of Obg-like family of GTPases, and present in archaea. Several Obg-like family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=99.58 E-value=2.8e-15 Score=117.59 Aligned_cols=54 Identities=33% Similarity=0.487 Sum_probs=48.0
Q ss_pred cceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 350 TKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 350 ~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
.++|++++|+||.|+|++||+||.++|++|.++ | . .|++|++|+|+|||||+|-
T Consensus 22 ~d~~~l~~GaTv~D~A~~IHtdi~~~f~~Ai~~--------------k-~--~~~vg~~~~L~dgDvV~Ii 75 (76)
T cd01669 22 PDAFLLPKGSTARDLAYAIHTDIGDGFLHAIDA--------------R-T--GRRVGEDYELKHRDVIKIV 75 (76)
T ss_pred cceEEECCCCCHHHHHHHHHHHHHhcceeeEEe--------------e-C--CEEeCCCcEecCCCEEEEe
Confidence 379999999999999999999999999999653 3 2 3589999999999999984
No 65
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.58 E-value=9.9e-14 Score=123.19 Aligned_cols=84 Identities=20% Similarity=0.250 Sum_probs=56.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|+++. ......|..+.+.....+.+.+.. ..+.+|||||....
T Consensus 1 ~ki~~vG~~~vGKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~-- 62 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGR-FVSKYLPTIGIDYGVKKVSVRNKE---------------VRVNFFDLSGHPEY-- 62 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCccceeEEEEEEEECCeE---------------EEEEEEECCccHHH--
Confidence 489999999999999999999543 333333444434333344444322 56899999998322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+++||++++|+|+++
T Consensus 63 -----~~~~~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 63 -----LEVRNEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred -----HHHHHHHhccCCEEEEEEECCC
Confidence 1233455788999999999754
No 66
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.58 E-value=4.3e-14 Score=127.05 Aligned_cols=83 Identities=19% Similarity=0.184 Sum_probs=58.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|++||.||||||||+|++++. .......|..+.+.....+...+.. ..+.+|||||..
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~---- 64 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDK-RFQPVHDLTIGVEFGARMITIDGKQ---------------IKLQIWDTAGQE---- 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcH----
Confidence 79999999999999999999944 3333333444455544555544422 468999999963
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.......++.+|++++|+|++
T Consensus 65 ---~~~~~~~~~~~~~d~il~v~d~~ 87 (168)
T cd01866 65 ---SFRSITRSYYRGAAGALLVYDIT 87 (168)
T ss_pred ---HHHHHHHHHhccCCEEEEEEECC
Confidence 23334556778999999999975
No 67
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.57 E-value=5.1e-14 Score=125.23 Aligned_cols=91 Identities=26% Similarity=0.379 Sum_probs=70.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||+|||||+|+|++......++.|++|++.....+...+ ..+.+|||||+....
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~iiDtpG~~~~~ 64 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDG-----------------KKYTLIDTAGIRRKG 64 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEECC-----------------eeEEEEECCCCcccc
Confidence 478999999999999999999976667778889999988777666554 348899999997553
Q ss_pred Ccccchh----hHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLG----NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~----~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+....+. ...+..++.+|++++|+|+.+
T Consensus 65 ~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~ 96 (174)
T cd01895 65 KVEEGIEKYSVLRTLKAIERADVVLLVIDATE 96 (174)
T ss_pred chhccHHHHHHHHHHHHHhhcCeEEEEEeCCC
Confidence 3222221 234567789999999999853
No 68
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.57 E-value=1.7e-14 Score=127.24 Aligned_cols=83 Identities=34% Similarity=0.514 Sum_probs=63.8
Q ss_pred EEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc--c
Q 014539 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--G 138 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~ 138 (423)
|+|.+|||||||+|++++. ...++++|++|++...+.+.+++ ..+.+|||||+...... .
T Consensus 1 l~G~~~~GKssl~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~~~~~~ 62 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGG-----------------KEIEIVDLPGTYSLSPYSED 62 (158)
T ss_pred CCCCCCCCHHHHHHHHhcC-cccccCCCCcccccceEEEeeCC-----------------eEEEEEECCCccccCCCChh
Confidence 5899999999999999954 47788899999999888887765 45999999999654322 2
Q ss_pred cchhhHHhhhhhhcceEEEEEecc
Q 014539 139 EGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 139 ~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..+...++.. ..+|++++|+|+.
T Consensus 63 ~~~~~~~~~~-~~~d~vi~v~d~~ 85 (158)
T cd01879 63 EKVARDFLLG-EKPDLIVNVVDAT 85 (158)
T ss_pred HHHHHHHhcC-CCCcEEEEEeeCC
Confidence 2233334433 5899999999974
No 69
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.56 E-value=5.2e-14 Score=124.22 Aligned_cols=82 Identities=18% Similarity=0.165 Sum_probs=56.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|+++. . ...++.|+.+.....+.+++.. ..+.+|||||..+.
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~-- 62 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNH-F-VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEY-- 62 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-cCCcCCcchheEEEEEEECCEE---------------EEEEEEECCCCcch--
Confidence 589999999999999999999543 2 2334444433333334444321 34789999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......+++.+|++++|+|+.
T Consensus 63 -----~~l~~~~~~~~~~~i~v~~~~ 83 (162)
T cd04138 63 -----SAMRDQYMRTGEGFLCVFAIN 83 (162)
T ss_pred -----HHHHHHHHhcCCEEEEEEECC
Confidence 223456788899999999974
No 70
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.56 E-value=2.7e-14 Score=147.91 Aligned_cols=92 Identities=25% Similarity=0.365 Sum_probs=74.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++.....+++.|++|++.....+...+ ..+.+|||||+.+.
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~lvDT~G~~~~ 234 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG-----------------QKYTLIDTAGIRRK 234 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC-----------------eeEEEEECCCCCCC
Confidence 4589999999999999999999988888999999999998877776554 45899999999766
Q ss_pred CCcccchh----hHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLG----NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~----~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+....+. ...+..++.||++++|+|+++
T Consensus 235 ~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~ 267 (435)
T PRK00093 235 GKVTEGVEKYSVIRTLKAIERADVVLLVIDATE 267 (435)
T ss_pred cchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCC
Confidence 54432221 345678899999999999853
No 71
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.56 E-value=3.9e-14 Score=126.84 Aligned_cols=83 Identities=17% Similarity=0.141 Sum_probs=54.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+|++ ........|..+.+.....+..++. ...+.+|||||..+.
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~Dt~g~~~~-- 63 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYAD-DSFTSAFVSTVGIDFKVKTVFRNDK---------------RVKLQIWDTAGQERY-- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhc-CCCCCCCCCceeeEEEEEEEEECCE---------------EEEEEEEECCChHHH--
Confidence 6899999999999999999994 3332222333222222222222221 146899999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++.+|++++|+|++
T Consensus 64 -----~~~~~~~~~~~~~~l~v~d~~ 84 (165)
T cd01865 64 -----RTITTAYYRGAMGFILMYDIT 84 (165)
T ss_pred -----HHHHHHHccCCcEEEEEEECC
Confidence 223456789999999999974
No 72
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.56 E-value=1.4e-13 Score=122.83 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=57.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+++ .... +.+++.|+.+.....+.+.+.. ..+.+|||||.....+
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~-~~~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFV-QGIF-VEKYDPTIEDSYRKQVEVDGQQ---------------CMLEILDTAGTEQFTA 64 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHH-hCCC-CcccCCcchheEEEEEEECCEE---------------EEEEEEECCCcccchh
Confidence 689999999999999999999 3332 3445556555444444444321 3578999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++.+|++++|+|++
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~ 83 (164)
T cd04175 65 -------MRDLYMKNGQGFVLVYSIT 83 (164)
T ss_pred -------HHHHHHhhCCEEEEEEECC
Confidence 3345688999999999974
No 73
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=7.5e-14 Score=122.56 Aligned_cols=86 Identities=30% Similarity=0.330 Sum_probs=68.2
Q ss_pred EEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC-cc
Q 014539 60 GIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS-QG 138 (423)
Q Consensus 60 ~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~-~~ 138 (423)
+++|.||||||||+|+|++.....+++.|++|++.........+ ..+.+|||||+..... ..
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~i~DtpG~~~~~~~~~ 63 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG-----------------REFILIDTGGIEPDDEGIS 63 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC-----------------eEEEEEECCCCCCchhHHH
Confidence 58999999999999999976666788899999888777776554 4699999999965433 12
Q ss_pred cchhhHHhhhhhhcceEEEEEecc
Q 014539 139 EGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 139 ~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..+.+.+...++.+|++++|+|+.
T Consensus 64 ~~~~~~~~~~~~~~d~ii~v~d~~ 87 (157)
T cd01894 64 KEIREQAELAIEEADVILFVVDGR 87 (157)
T ss_pred HHHHHHHHHHHHhCCEEEEEEecc
Confidence 334455667789999999999974
No 74
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.56 E-value=1.4e-13 Score=127.71 Aligned_cols=156 Identities=14% Similarity=0.150 Sum_probs=95.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecC-CccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.||||||||+|+|+++ .......|..+.+.....+.++ +.. ..+.+|||||....
T Consensus 1 ~KivivG~~~vGKTsli~~l~~~-~~~~~~~~t~~~d~~~~~v~~~~~~~---------------~~l~l~Dt~G~~~~- 63 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHG-IFSQHYKATIGVDFALKVIEWDPNTV---------------VRLQLWDIAGQERF- 63 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCceeEEEEEEEEEECCCCE---------------EEEEEEECCCchhh-
Confidence 48999999999999999999943 3322223433334434444444 221 46899999998432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......+++||++++|+|+++... ++.+ ..+
T Consensus 64 ------~~~~~~~~~~a~~~ilv~D~t~~~s-------------~~~~---------------~~~-------------- 95 (201)
T cd04107 64 ------GGMTRVYYRGAVGAIIVFDVTRPST-------------FEAV---------------LKW-------------- 95 (201)
T ss_pred ------hhhHHHHhCCCCEEEEEEECCCHHH-------------HHHH---------------HHH--------------
Confidence 2234567899999999999753221 1100 000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcC-CcEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ-SGRV 294 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~-~~~v 294 (423)
++.+...+. +......|+++++||.| +... .....+++.++++..+ ..++
T Consensus 96 ------~~~i~~~~~--------------------~~~~~~~piilv~NK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 146 (201)
T cd04107 96 ------KADLDSKVT--------------------LPNGEPIPCLLLANKCD--LKKR-LAKDGEQMDQFCKENGFIGWF 146 (201)
T ss_pred ------HHHHHHhhc--------------------ccCCCCCcEEEEEECCC--cccc-cccCHHHHHHHHHHcCCceEE
Confidence 011100000 00024679999999995 4321 2345677888888777 5799
Q ss_pred EechhhhHhhcC
Q 014539 295 TISAQVEAELTE 306 (423)
Q Consensus 295 ~~Sa~~e~~i~~ 306 (423)
++||+.+.++.+
T Consensus 147 e~Sak~~~~v~e 158 (201)
T cd04107 147 ETSAKEGINIEE 158 (201)
T ss_pred EEeCCCCCCHHH
Confidence 999999876643
No 75
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.56 E-value=4.9e-14 Score=125.03 Aligned_cols=83 Identities=17% Similarity=0.129 Sum_probs=58.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|++.++. . +..++.|+.+.....+.+++.. ..+.+|||||.....+
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGI-F-VEKYDPTIEDSYRKQIEVDGQQ---------------CMLEILDTAGTEQFTA 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCchhhhEEEEEEECCEE---------------EEEEEEECCCccccch
Confidence 689999999999999999999443 2 2344445544444445554422 4588999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++++|++++|+|+++
T Consensus 65 -------~~~~~~~~~~~~ilv~d~~~ 84 (163)
T cd04136 65 -------MRDLYIKNGQGFVLVYSITS 84 (163)
T ss_pred -------HHHHHhhcCCEEEEEEECCC
Confidence 23445789999999999753
No 76
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.55 E-value=7.6e-14 Score=152.93 Aligned_cols=91 Identities=25% Similarity=0.350 Sum_probs=72.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++.....++++|+||+++....+.+.+ .++.||||||+.+..
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~-----------------~~~~liDTaG~~~~~ 512 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDG-----------------EDWLFIDTAGIKRRQ 512 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEECC-----------------CEEEEEECCCcccCc
Confidence 479999999999999999999977777889999999999988887766 458899999997543
Q ss_pred Ccccc---hh-hHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEG---LG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~---l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+ +. .+....++.||++++|+|+++
T Consensus 513 ~~~~~~e~~~~~r~~~~i~~advvilViDat~ 544 (712)
T PRK09518 513 HKLTGAEYYSSLRTQAAIERSELALFLFDASQ 544 (712)
T ss_pred ccchhHHHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 32211 11 123456889999999999864
No 77
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.55 E-value=6.1e-14 Score=129.11 Aligned_cols=83 Identities=19% Similarity=0.268 Sum_probs=56.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCcc-ccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.+|||||||++++++ .......++.|+ .+.....+.+.+.. .++.+|||||...
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~-- 62 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKD-GAFLNGNFIATVGIDFRNKVVTVDGVK---------------VKLQIWDTAGQER-- 62 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-CCCCccCcCCcccceeEEEEEEECCEE---------------EEEEEEeCCCcHH--
Confidence 4899999999999999999994 444333444333 23333334554432 4689999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+.......++++|++++|+|++
T Consensus 63 -----~~~~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 63 -----FRSVTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred -----HHHhhHHHccCCCEEEEEEECC
Confidence 2223345678899999999975
No 78
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.54 E-value=2.5e-13 Score=120.50 Aligned_cols=83 Identities=18% Similarity=0.168 Sum_probs=54.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|++.. ......|..+.+.....+.+.+. ..++.+|||||..+..
T Consensus 1 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~- 63 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDT-FDPDLAATIGVDFKVKTLTVDGK---------------KVKLAIWDTAGQERFR- 63 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC-CCcccCCcccceEEEEEEEECCE---------------EEEEEEEECCCchhhh-
Confidence 489999999999999999999443 32223343333332233333321 1468999999974322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......++.+|++++|+|++
T Consensus 64 ------~~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd01863 64 ------TLTSSYYRGAQGVILVYDVT 83 (161)
T ss_pred ------hhhHHHhCCCCEEEEEEECC
Confidence 22345578999999999975
No 79
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.54 E-value=3e-13 Score=121.04 Aligned_cols=83 Identities=23% Similarity=0.177 Sum_probs=56.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|++ ........+..+.+.....+.+++.. .++.+|||||....
T Consensus 1 ~ki~viG~~~~GKSsl~~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~-- 62 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVN-KKFSNQYKATIGADFLTKEVTVDDKL---------------VTLQIWDTAGQERF-- 62 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHhc-CCCCcCcCCccceEEEEEEEEECCEE---------------EEEEEEeCCChHHH--
Confidence 4899999999999999999994 43332223333333333344444421 46889999997322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......+++||++++|+|+.
T Consensus 63 -----~~~~~~~~~~~d~~i~v~d~~ 83 (172)
T cd01862 63 -----QSLGVAFYRGADCCVLVYDVT 83 (172)
T ss_pred -----HhHHHHHhcCCCEEEEEEECC
Confidence 223456688999999999975
No 80
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.53 E-value=2.7e-13 Score=120.17 Aligned_cols=83 Identities=19% Similarity=0.200 Sum_probs=56.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|++. .......|..+.+.....+..++.. .++.+|||||...
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~--- 61 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDG-KFSEQYKSTIGVDFKTKTIEVDGKR---------------VKLQIWDTAGQER--- 61 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCChHH---
Confidence 48999999999999999999944 3333344444444444444444321 4689999999632
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
........++.||++++|+|+.
T Consensus 62 ----~~~~~~~~~~~~d~~ilv~d~~ 83 (164)
T smart00175 62 ----FRSITSSYYRGAVGALLVYDIT 83 (164)
T ss_pred ----HHHHHHHHhCCCCEEEEEEECC
Confidence 2223345578899999999974
No 81
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.53 E-value=5.3e-14 Score=128.19 Aligned_cols=89 Identities=21% Similarity=0.218 Sum_probs=61.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
...++|+|+|.+|+|||||+|+|++.. .+.+++.+++|.++..... + .++.+|||||+.
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~liDtpG~~ 75 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEV--N------------------DGFRLVDLPGYG 75 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEe--C------------------CcEEEEeCCCCc
Confidence 345799999999999999999999654 5667888888877654332 1 248999999985
Q ss_pred CCCCcc---cch---hhHHhhhhhhcceEEEEEecc
Q 014539 133 KGASQG---EGL---GNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 133 ~~~~~~---~~l---~~~~l~~ir~aD~il~Vvd~~ 162 (423)
...... ..+ ...++.....+|++++|+|+.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~ 111 (179)
T TIGR03598 76 YAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIR 111 (179)
T ss_pred cccCChhHHHHHHHHHHHHHHhChhhcEEEEEecCC
Confidence 433211 111 122333334578999999974
No 82
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.53 E-value=3e-13 Score=120.32 Aligned_cols=82 Identities=16% Similarity=0.134 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.||||||||+|++++.. . ...++.|+.+.......+++. ...+.+|||||..+..
T Consensus 1 ~ki~v~G~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~- 62 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGH-F-VDDYDPTIEDSYRKQIEIDGE---------------VCLLDILDTAGQEEFS- 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCc-C-CcccCCchhhhEEEEEEECCE---------------EEEEEEEECCCcccch-
Confidence 489999999999999999999543 2 223334444443333333331 1458899999985432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......++.+|++++|+|+.
T Consensus 63 ------~~~~~~~~~~~~~i~v~d~~ 82 (164)
T smart00173 63 ------AMRDQYMRTGEGFLLVYSIT 82 (164)
T ss_pred ------HHHHHHHhhCCEEEEEEECC
Confidence 12345678899999999974
No 83
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.53 E-value=2.4e-13 Score=124.98 Aligned_cols=82 Identities=20% Similarity=0.140 Sum_probs=55.8
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.+|||||||+|+|+++. . ...++.|+.+.....+.+.+.. ..+.||||||.....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~-f-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~-- 61 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH-F-VETYDPTIEDSYRKQVVVDGQP---------------CMLEVLDTAGQEEYT-- 61 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC-C-CccCCCchHhhEEEEEEECCEE---------------EEEEEEECCCchhhH--
Confidence 58999999999999999999443 2 2334555444433334443311 358899999974322
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+++.||++++|+|+++
T Consensus 62 -----~~~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 62 -----ALRDQWIREGEGFILVYSITS 82 (190)
T ss_pred -----HHHHHHHHhCCEEEEEEECCC
Confidence 233456889999999999753
No 84
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.52 E-value=1.4e-13 Score=122.03 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=55.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecC--CccchhhccccccccccCceEEEEecCCCcCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP--DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~--~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+||+++|.+|+|||||+|+++++ .......|..+.+.....+.++ +. ...+.+|||||...
T Consensus 1 ~kv~~vG~~~~GKTsl~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~---------------~~~~~i~D~~G~~~- 63 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKG-IFTKDYKKTIGVDFLEKQIFLRQSDE---------------DVRLMLWDTAGQEE- 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCcEEEEEEEEEEEEcCCCC---------------EEEEEEeeCCchHH-
Confidence 48999999999999999999943 3322223333333322333333 21 24699999999632
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
........++++|++++|+|+.
T Consensus 64 ------~~~~~~~~~~~~~~~v~v~d~~ 85 (162)
T cd04106 64 ------FDAITKAYYRGAQACILVFSTT 85 (162)
T ss_pred ------HHHhHHHHhcCCCEEEEEEECC
Confidence 2223456788999999999975
No 85
>PLN03118 Rab family protein; Provisional
Probab=99.52 E-value=3.7e-13 Score=125.91 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..+||+++|.+|||||||+|+|++..... ..|.++.+.....+.+++.. .++.||||||....
T Consensus 13 ~~~kv~ivG~~~vGKTsli~~l~~~~~~~--~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 75 (211)
T PLN03118 13 LSFKILLIGDSGVGKSSLLVSFISSSVED--LAPTIGVDFKIKQLTVGGKR---------------LKLTIWDTAGQERF 75 (211)
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCC--cCCCceeEEEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 35899999999999999999999554322 22333322223333343322 46899999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++.+|++++|+|+++
T Consensus 76 ~~-------~~~~~~~~~d~~vlv~D~~~ 97 (211)
T PLN03118 76 RT-------LTSSYYRNAQGIILVYDVTR 97 (211)
T ss_pred HH-------HHHHHHhcCCEEEEEEECCC
Confidence 22 34566889999999999753
No 86
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.52 E-value=1.2e-13 Score=123.34 Aligned_cols=81 Identities=23% Similarity=0.287 Sum_probs=58.9
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcc---eecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKA---QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~---~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+|+++|.+|||||||+|+|++.... .....+.+|+..+.+.+.+++ ..+.+|||||...
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~- 62 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGN-----------------ARLKFWDLGGQES- 62 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEECC-----------------EEEEEEECCCChh-
Confidence 4899999999999999999853221 112234566666666666654 5699999999843
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+.......++.+|++++|+|++
T Consensus 63 ------~~~~~~~~~~~~~~~v~vvd~~ 84 (167)
T cd04160 63 ------LRSLWDKYYAECHAIIYVIDST 84 (167)
T ss_pred ------hHHHHHHHhCCCCEEEEEEECc
Confidence 2234556789999999999975
No 87
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.52 E-value=5.1e-13 Score=118.90 Aligned_cols=83 Identities=19% Similarity=0.129 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||++++..+.. . ..++.|+.+.....+.+++.. ..+.||||||..+...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~-~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF-I-EKYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQFAS 64 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-C-CCCCCchhheEEEEEEECCEE---------------EEEEEEECCCcccccc
Confidence 5899999999999999999994432 2 223333333333444444421 4588999999754432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+++||++++|+|+++
T Consensus 65 -------~~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 65 -------MRDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred -------hHHHHHhhCCEEEEEEECCC
Confidence 33456789999999999753
No 88
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.51 E-value=2.7e-13 Score=122.82 Aligned_cols=164 Identities=14% Similarity=0.135 Sum_probs=94.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.+|||||||+|+++ .........|..+.+.....+.+...... .. +.......+.||||||..+
T Consensus 4 ~~ki~ivG~~~vGKTsli~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~i~Dt~G~~~-- 75 (180)
T cd04127 4 LIKFLALGDSGVGKTSFLYQYT-DNKFNPKFITTVGIDFREKRVVYNSSGPG---GT--LGRGQRIHLQLWDTAGQER-- 75 (180)
T ss_pred eEEEEEECCCCCCHHHHHHHHh-cCCCCccCCCccceEEEEEEEEEcCcccc---cc--ccCCCEEEEEEEeCCChHH--
Confidence 4799999999999999999999 43333222333333333333332210000 00 0000124689999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+.......++++|++++|+|+++..+ +. ....+
T Consensus 76 -----~~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~~~~~-------------- 108 (180)
T cd04127 76 -----FRSLTTAFFRDAMGFLLIFDLTNEQS-------------FL---------------NVRNW-------------- 108 (180)
T ss_pred -----HHHHHHHHhCCCCEEEEEEECCCHHH-------------HH---------------HHHHH--------------
Confidence 22334566889999999999753211 11 00001
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+..+... ......|+++++||.| +.+. .....+++.+++...+.++++
T Consensus 109 ------~~~i~~~-----------------------~~~~~~piiiv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~e 156 (180)
T cd04127 109 ------MSQLQTH-----------------------AYCENPDIVLCGNKAD--LEDQ-RQVSEEQAKALADKYGIPYFE 156 (180)
T ss_pred ------HHHHHHh-----------------------cCCCCCcEEEEEeCcc--chhc-CccCHHHHHHHHHHcCCeEEE
Confidence 1111000 0012468999999995 4332 233456678888878889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 157 ~Sak~~~~v~~ 167 (180)
T cd04127 157 TSAATGTNVEK 167 (180)
T ss_pred EeCCCCCCHHH
Confidence 99998866643
No 89
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.50 E-value=2.1e-13 Score=120.01 Aligned_cols=91 Identities=38% Similarity=0.439 Sum_probs=70.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||+|||||+|+|+|...+.+++.+.+|.....+....+. ..+.+|||||+....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 65 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDD-----------------AQIIFVDTPGIHKPK 65 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccCCCCceeceEEEEEEcCC-----------------eEEEEEECCCCCcch
Confidence 468999999999999999999987777788888888877777655443 458999999996554
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. ...+.......+..+|++++|+|+.+
T Consensus 66 ~~~~~~~~~~~~~~~~~~d~i~~v~d~~~ 94 (168)
T cd04163 66 KKLGERMVKAAWSALKDVDLVLFVVDASE 94 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 22233455677899999999999853
No 90
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.50 E-value=2.2e-13 Score=120.99 Aligned_cols=152 Identities=21% Similarity=0.159 Sum_probs=94.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||....
T Consensus 1 ~ki~v~G~~~vGKTsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~-- 62 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENK-FKEDSQHTIGVEFGSKIIRVGGKR---------------VKLQIWDTAGQERF-- 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEECcchHHH--
Confidence 589999999999999999999443 333333444444444444444422 45899999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
.......++.+|++++|+|+++... +. .
T Consensus 63 -----~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~------------------- 90 (161)
T cd04113 63 -----RSVTRSYYRGAAGALLVYDITNRTS-------------FE---------------A------------------- 90 (161)
T ss_pred -----HHhHHHHhcCCCEEEEEEECCCHHH-------------HH---------------H-------------------
Confidence 1234566789999999999754211 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
....+..+.. ......|+++++||.| .... .....+++..++...+..++.+
T Consensus 91 -~~~~~~~~~~------------------------~~~~~~~iivv~nK~D--~~~~-~~~~~~~~~~~~~~~~~~~~~~ 142 (161)
T cd04113 91 -LPTWLSDARA------------------------LASPNIVVILVGNKSD--LADQ-REVTFLEASRFAQENGLLFLET 142 (161)
T ss_pred -HHHHHHHHHH------------------------hCCCCCeEEEEEEchh--cchh-ccCCHHHHHHHHHHcCCEEEEE
Confidence 0000111100 0014579999999995 4332 2334566777777778889999
Q ss_pred chhhhHhhcC
Q 014539 297 SAQVEAELTE 306 (423)
Q Consensus 297 Sa~~e~~i~~ 306 (423)
||+.+.++.+
T Consensus 143 Sa~~~~~i~~ 152 (161)
T cd04113 143 SALTGENVEE 152 (161)
T ss_pred ECCCCCCHHH
Confidence 9998766643
No 91
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.50 E-value=2.9e-13 Score=126.36 Aligned_cols=84 Identities=18% Similarity=0.181 Sum_probs=59.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|.++|.+|||||||++++. .........|..+.+.....+.+++.. ..+.+|||||..+..
T Consensus 1 ~~vvvlG~~gVGKTSli~r~~-~~~f~~~~~~Ti~~~~~~~~i~~~~~~---------------v~l~iwDtaGqe~~~- 63 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFT-DDTFCEACKSGVGVDFKIKTVELRGKK---------------IRLQIWDTAGQERFN- 63 (202)
T ss_pred CEEEEECcCCCCHHHHHHHHH-hCCCCCcCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCchhhH-
Confidence 479999999999999999999 443332223333444444455555533 468999999985432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++++||++++|+|+++
T Consensus 64 ------~l~~~y~~~ad~iIlVfDvtd 84 (202)
T cd04120 64 ------SITSAYYRSAKGIILVYDITK 84 (202)
T ss_pred ------HHHHHHhcCCCEEEEEEECcC
Confidence 244567899999999999764
No 92
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.50 E-value=4.5e-13 Score=119.96 Aligned_cols=83 Identities=16% Similarity=0.179 Sum_probs=52.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+++++. ......| |+.......+..... ...+.+|||||.....
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~- 63 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGT-FRESYIP-TIEDTYRQVISCSKN---------------ICTLQITDTTGSHQFP- 63 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCCcCC-cchheEEEEEEECCE---------------EEEEEEEECCCCCcch-
Confidence 689999999999999999999543 2222122 111111111222221 1468999999985432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++.+|++++|+|+++
T Consensus 64 ------~~~~~~~~~~~~~ilv~d~~~ 84 (165)
T cd04140 64 ------AMQRLSISKGHAFILVYSVTS 84 (165)
T ss_pred ------HHHHHHhhcCCEEEEEEECCC
Confidence 123455788999999999753
No 93
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=4e-13 Score=126.06 Aligned_cols=85 Identities=19% Similarity=0.178 Sum_probs=57.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+|+++.. .....|..+.+.....+.+.+.. ...+.+|||||....
T Consensus 3 ~KIvvvG~~~vGKTsLi~~l~~~~~-~~~~~~ti~~d~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~-- 65 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRF-AEVSDPTVGVDFFSRLIEIEPGV--------------RIKLQLWDTAGQERF-- 65 (211)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC-CCCCCceeceEEEEEEEEECCCC--------------EEEEEEEeCCcchhH--
Confidence 7999999999999999999995432 22223444344433344432211 146899999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......++++|++++|+|+++
T Consensus 66 -----~~~~~~~~~~~d~iilv~D~~~ 87 (211)
T cd04111 66 -----RSITRSYYRNSVGVLLVFDITN 87 (211)
T ss_pred -----HHHHHHHhcCCcEEEEEEECCC
Confidence 2234567899999999999753
No 94
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.49 E-value=8.3e-13 Score=118.01 Aligned_cols=85 Identities=13% Similarity=0.141 Sum_probs=55.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.+|||||||+++|.++. ......+..+.+.....+.+++.. .++.+|||||...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~-- 64 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGT-FSERQGNTIGVDFTMKTLEIEGKR---------------VKLQIWDTAGQER-- 64 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCC-CcccCCCccceEEEEEEEEECCEE---------------EEEEEEECCChHH--
Confidence 3799999999999999999998433 222222222233333334443311 3689999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.+|++++|+|+++
T Consensus 65 -----~~~~~~~~~~~~d~~llv~d~~~ 87 (165)
T cd01864 65 -----FRTITQSYYRSANGAIIAYDITR 87 (165)
T ss_pred -----HHHHHHHHhccCCEEEEEEECcC
Confidence 22234566789999999999753
No 95
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.49 E-value=1.1e-12 Score=115.75 Aligned_cols=84 Identities=18% Similarity=0.100 Sum_probs=54.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|+|||||+|+|++.... ....+.++.+.....+.+.+. ...+.+|||||.....
T Consensus 1 ~ki~i~G~~~~GKStli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~D~~g~~~~~- 63 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENKFN-EKHESTTQASFFQKTVNIGGK---------------RIDLAIWDTAGQERYH- 63 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCC-CCcCCccceeEEEEEEEECCE---------------EEEEEEEECCchHHHH-
Confidence 48999999999999999999954432 222333333333333433321 1458999999964321
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++|++++|+|+++
T Consensus 64 ------~~~~~~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 64 ------ALGPIYYRDADGAILVYDITD 84 (162)
T ss_pred ------HhhHHHhccCCEEEEEEECCC
Confidence 223344678999999999753
No 96
>PLN03108 Rab family protein; Provisional
Probab=99.49 E-value=5.4e-13 Score=125.00 Aligned_cols=153 Identities=18% Similarity=0.135 Sum_probs=97.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+|+|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||....
T Consensus 6 ~~kivivG~~gvGKStLi~~l~~~~-~~~~~~~ti~~~~~~~~i~~~~~~---------------i~l~l~Dt~G~~~~- 68 (210)
T PLN03108 6 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMITIDNKP---------------IKLQIWDTAGQESF- 68 (210)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCCccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH-
Confidence 3799999999999999999999443 333334444444444555555422 35889999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......++.+|++++|+|+++... +..+ ..+
T Consensus 69 ------~~~~~~~~~~ad~~vlv~D~~~~~s-------------~~~l---------------~~~-------------- 100 (210)
T PLN03108 69 ------RSITRSYYRGAAGALLVYDITRRET-------------FNHL---------------ASW-------------- 100 (210)
T ss_pred ------HHHHHHHhccCCEEEEEEECCcHHH-------------HHHH---------------HHH--------------
Confidence 2244567889999999999753210 1100 000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+..+.. ......|+++++||.| +... .....++.+++++..+.+++.
T Consensus 101 ------~~~~~~------------------------~~~~~~piiiv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~e 147 (210)
T PLN03108 101 ------LEDARQ------------------------HANANMTIMLIGNKCD--LAHR-RAVSTEEGEQFAKEHGLIFME 147 (210)
T ss_pred ------HHHHHH------------------------hcCCCCcEEEEEECcc--Cccc-cCCCHHHHHHHHHHcCCEEEE
Confidence 000000 0013679999999984 4332 233456777788777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 148 ~Sa~~~~~v~e 158 (210)
T PLN03108 148 ASAKTAQNVEE 158 (210)
T ss_pred EeCCCCCCHHH
Confidence 99998877643
No 97
>PRK04213 GTP-binding protein; Provisional
Probab=99.49 E-value=3.7e-13 Score=124.54 Aligned_cols=86 Identities=23% Similarity=0.252 Sum_probs=58.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC-
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK- 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~- 133 (423)
..++|+++|.||||||||+|+|++. ...++..|++|+++.... + ..+.+|||||+..
T Consensus 8 ~~~~i~i~G~~~~GKSsLin~l~~~-~~~~~~~~~~t~~~~~~~--~-------------------~~~~l~Dt~G~~~~ 65 (201)
T PRK04213 8 RKPEIVFVGRSNVGKSTLVRELTGK-KVRVGKRPGVTRKPNHYD--W-------------------GDFILTDLPGFGFM 65 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCceeeCceEEe--e-------------------cceEEEeCCccccc
Confidence 3479999999999999999999954 467788899988765332 2 1389999999721
Q ss_pred -CCCc--ccchhhHHhh----hhhhcceEEEEEecc
Q 014539 134 -GASQ--GEGLGNKFLS----HIREVDSILQVVRCF 162 (423)
Q Consensus 134 -~~~~--~~~l~~~~l~----~ir~aD~il~Vvd~~ 162 (423)
+.+. .+.+...+.. .+..+|++++|+|+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 101 (201)
T PRK04213 66 SGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGK 101 (201)
T ss_pred cccCHHHHHHHHHHHHHHHHhhhhhheEEEEEEeCc
Confidence 1111 1112122222 345578999999864
No 98
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.48 E-value=4.9e-13 Score=119.96 Aligned_cols=85 Identities=22% Similarity=0.155 Sum_probs=56.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+++++ .........|..+.+.....+.+.+.. ..+.+|||||..+.
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~- 67 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYV-TNKFDTQLFHTIGVEFLNKDLEVDGHF---------------VTLQIWDTAGQERF- 67 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHH-cCCCCcCcCCceeeEEEEEEEEECCeE---------------EEEEEEeCCChHHH-
Confidence 3799999999999999999999 433333333333333323333343322 45889999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......++.||++++|+|+.+
T Consensus 68 ------~~~~~~~~~~~d~~i~v~d~~~ 89 (170)
T cd04116 68 ------RSLRTPFYRGSDCCLLTFAVDD 89 (170)
T ss_pred ------HHhHHHHhcCCCEEEEEEECCC
Confidence 2234456789999999999753
No 99
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.48 E-value=3.4e-13 Score=120.58 Aligned_cols=84 Identities=15% Similarity=0.210 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||++++++ ........|..+.+.....+.+.+.. ..+.+|||||.....
T Consensus 1 ~ki~vvG~~~~GKTsli~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~~- 63 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTD-NEFHSSHISTIGVDFKMKTIEVDGIK---------------VRIQIWDTAGQERYQ- 63 (161)
T ss_pred CEEEEECcCCCCHHHHHHHHhc-CCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHhHH-
Confidence 4799999999999999999994 33332223333333333344444422 468999999974322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++|++++|+|.++
T Consensus 64 ------~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04117 64 ------TITKQYYRRAQGIFLVYDISS 84 (161)
T ss_pred ------hhHHHHhcCCcEEEEEEECCC
Confidence 234456789999999999753
No 100
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.48 E-value=2.9e-13 Score=126.70 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=59.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecC------------------------------CCCccccceEEEEecCCccch
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDPRLH 107 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~------------------------------~p~tT~~~~~~~~~~~~~r~~ 107 (423)
+|+|+|.||+|||||+|+|+....+..++ .+++|+++....+...+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---- 76 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPK---- 76 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCC----
Confidence 58999999999999999998654443321 15666666665554443
Q ss_pred hhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 108 VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||... +.......++.||++++|+|+.+
T Consensus 77 -------------~~~~liDTpG~~~-------~~~~~~~~~~~ad~~llVvD~~~ 112 (208)
T cd04166 77 -------------RKFIIADTPGHEQ-------YTRNMVTGASTADLAILLVDARK 112 (208)
T ss_pred -------------ceEEEEECCcHHH-------HHHHHHHhhhhCCEEEEEEECCC
Confidence 5699999999732 23345667899999999999853
No 101
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.48 E-value=5e-13 Score=116.66 Aligned_cols=84 Identities=14% Similarity=0.162 Sum_probs=57.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|++.... ....+..+.+.....+..+.. ...+.+||+||...
T Consensus 1 ~~i~~~G~~~~GKStl~~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~--- 61 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKFD-ENYKSTIGVDFKSKTIEIDGK---------------TVKLQIWDTAGQER--- 61 (159)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCC-CccCCceeeeeEEEEEEECCE---------------EEEEEEEecCChHH---
Confidence 47999999999999999999954433 223444444444444444331 14589999999732
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++++|++++|+|+++
T Consensus 62 ----~~~~~~~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 62 ----FRSITPSYYRGAHGAILVYDITN 84 (159)
T ss_pred ----HHHHHHHHhcCCCEEEEEEECCC
Confidence 22345566788999999999753
No 102
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.48 E-value=4.5e-13 Score=124.25 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||++++.+. .......|..+.+.....+.+++.. ..+.||||||....
T Consensus 5 ~~~kivvvG~~~vGKTsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~D~~G~~~~ 68 (199)
T cd04110 5 HLFKLLIIGDSGVGKSSLLLRFADN-TFSGSYITTIGVDFKIRTVEINGER---------------VKLQIWDTAGQERF 68 (199)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCcCccccceeEEEEEEECCEE---------------EEEEEEeCCCchhH
Confidence 3589999999999999999999943 3222222333333333333333321 35889999997432
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......+++++|++++|+|+++
T Consensus 69 -------~~~~~~~~~~a~~iilv~D~~~ 90 (199)
T cd04110 69 -------RTITSTYYRGTHGVIVVYDVTN 90 (199)
T ss_pred -------HHHHHHHhCCCcEEEEEEECCC
Confidence 2345567889999999999753
No 103
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.47 E-value=5.9e-13 Score=121.95 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=55.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+++++ .......|..+.+.....+.+++.. ..+.+|||||....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~g~~~~-- 62 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTED-EFSESTKSTIGVDFKIKTVYIENKI---------------IKLQIWDTNGQERF-- 62 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHHH--
Confidence 48999999999999999999944 3322223333333333334444322 45899999996322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......+++||++++|+|++
T Consensus 63 -----~~~~~~~~~~~d~iilv~d~~ 83 (188)
T cd04125 63 -----RSLNNSYYRGAHGYLLVYDVT 83 (188)
T ss_pred -----HhhHHHHccCCCEEEEEEECc
Confidence 224456688999999999975
No 104
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.47 E-value=5.8e-13 Score=123.32 Aligned_cols=90 Identities=20% Similarity=0.125 Sum_probs=67.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecC-CCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~-~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
++|+++|.||||||||+|+|+|...+.++. .+++|.+++.+...+.+ .++.++||||+....
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~viDTPG~~d~~ 63 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDG-----------------RRVNVIDTPGLFDTS 63 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECC-----------------eEEEEEECcCCCCcc
Confidence 379999999999999999999877665553 46788888888776655 569999999997654
Q ss_pred Ccccchh----hHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLG----NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~----~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.+. ..+......+|++++|+|+..
T Consensus 64 ~~~~~~~~~i~~~~~~~~~g~~~illVi~~~~ 95 (196)
T cd01852 64 VSPEQLSKEIVRCLSLSAPGPHAFLLVVPLGR 95 (196)
T ss_pred CChHHHHHHHHHHHHhcCCCCEEEEEEEECCC
Confidence 3222222 222333567899999999865
No 105
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.47 E-value=1.7e-13 Score=146.89 Aligned_cols=81 Identities=32% Similarity=0.500 Sum_probs=62.3
Q ss_pred ecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc--ccc
Q 014539 63 GLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ--GEG 140 (423)
Q Consensus 63 G~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~~ 140 (423)
|.||||||||+|+|+| ....++++|++|++...+.+.+++ .++.+|||||+....+. .+.
T Consensus 1 G~pNvGKSSL~N~Ltg-~~~~v~n~pG~Tv~~~~~~i~~~~-----------------~~i~lvDtPG~~~~~~~s~~e~ 62 (591)
T TIGR00437 1 GNPNVGKSTLFNALTG-ANQTVGNWPGVTVEKKEGKLGFQG-----------------EDIEIVDLPGIYSLTTFSLEEE 62 (591)
T ss_pred CCCCCCHHHHHHHHhC-CCCeecCCCCeEEEEEEEEEEECC-----------------eEEEEEECCCccccCccchHHH
Confidence 8999999999999995 456899999999999999887765 45899999999754432 122
Q ss_pred hhhHHhhhhhhcceEEEEEecc
Q 014539 141 LGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 141 l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
....++. .+.+|++++|+|++
T Consensus 63 v~~~~l~-~~~aDvvI~VvDat 83 (591)
T TIGR00437 63 VARDYLL-NEKPDLVVNVVDAS 83 (591)
T ss_pred HHHHHHh-hcCCCEEEEEecCC
Confidence 2222222 24799999999975
No 106
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.47 E-value=3.1e-13 Score=121.97 Aligned_cols=153 Identities=22% Similarity=0.171 Sum_probs=102.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||.++|..|||||||+-++. .........|.+........+.+++.. ..+.+|||+|+.++.
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfv-k~~F~e~~e~TIGaaF~tktv~~~~~~---------------ikfeIWDTAGQERy~ 68 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFV-KDQFHENIEPTIGAAFLTKTVTVDDNT---------------IKFEIWDTAGQERYH 68 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhh-hCccccccccccccEEEEEEEEeCCcE---------------EEEEEEEcCCccccc
Confidence 3799999999999999999999 444433223333333334445666543 468899999998776
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+ ....++|+|+++|+|.|+.+. +.+++...|+..
T Consensus 69 s-------lapMYyRgA~AAivvYDit~~----------------------------~SF~~aK~Wvke----------- 102 (200)
T KOG0092|consen 69 S-------LAPMYYRGANAAIVVYDITDE----------------------------ESFEKAKNWVKE----------- 102 (200)
T ss_pred c-------cccceecCCcEEEEEEecccH----------------------------HHHHHHHHHHHH-----------
Confidence 5 456789999999999996432 222222222211
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+.+..+ ..--+.+|.||. |+.+. .....++.+.++.+.|..|+.
T Consensus 103 ---------L~~~~~------------------------~~~vialvGNK~--DL~~~-R~V~~~ea~~yAe~~gll~~E 146 (200)
T KOG0092|consen 103 ---------LQRQAS------------------------PNIVIALVGNKA--DLLER-REVEFEEAQAYAESQGLLFFE 146 (200)
T ss_pred ---------HHhhCC------------------------CCeEEEEecchh--hhhhc-ccccHHHHHHHHHhcCCEEEE
Confidence 111111 112234588999 56553 456788999999999999999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+|||++.++.+
T Consensus 147 TSAKTg~Nv~~ 157 (200)
T KOG0092|consen 147 TSAKTGENVNE 157 (200)
T ss_pred EecccccCHHH
Confidence 99999988754
No 107
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.47 E-value=1.4e-12 Score=120.30 Aligned_cols=83 Identities=23% Similarity=0.269 Sum_probs=55.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCC---------------CCccccceEEEEecCCccchhhccccccccccCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF---------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~---------------p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
.+|+++|.+|||||||+|+|++........+ .++|.......+... ..
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~-----------------~~ 65 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYK-----------------DT 65 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEEC-----------------CE
Confidence 4799999999999999999995322221111 233333332223222 25
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.+|||||... +.......++.+|++++|+|+++
T Consensus 66 ~~~l~DtpG~~~-------~~~~~~~~~~~~d~~ilV~d~~~ 100 (194)
T cd01891 66 KINIVDTPGHAD-------FGGEVERVLSMVDGVLLLVDASE 100 (194)
T ss_pred EEEEEECCCcHH-------HHHHHHHHHHhcCEEEEEEECCC
Confidence 689999999843 33355677899999999999853
No 108
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.47 E-value=5.8e-13 Score=120.04 Aligned_cols=78 Identities=22% Similarity=0.237 Sum_probs=56.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.+|||||||+|+|++.. . . . +.+|+......+...+ .++.+|||||.....
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~-~-~-~-~~~T~~~~~~~~~~~~-----------------~~i~l~Dt~G~~~~~-- 57 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDE-F-M-Q-PIPTIGFNVETVEYKN-----------------LKFTIWDVGGKHKLR-- 57 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCC-C-C-C-cCCcCceeEEEEEECC-----------------EEEEEEECCCChhcc--
Confidence 58999999999999999999542 2 1 2 3445554444444433 569999999985332
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+..+++++|++++|+|+++
T Consensus 58 -----~~~~~~~~~ad~ii~V~D~s~ 78 (169)
T cd04158 58 -----PLWKHYYLNTQAVVFVVDSSH 78 (169)
T ss_pred -----hHHHHHhccCCEEEEEEeCCc
Confidence 245567899999999999764
No 109
>PLN03110 Rab GTPase; Provisional
Probab=99.46 E-value=9.7e-13 Score=123.82 Aligned_cols=85 Identities=16% Similarity=0.126 Sum_probs=60.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..+||++||.+|||||||+++|++. .......|..+.+.....+.+++.. ..+.||||||...
T Consensus 11 ~~~Ki~ivG~~~vGKStLi~~l~~~-~~~~~~~~t~g~~~~~~~v~~~~~~---------------~~l~l~Dt~G~~~- 73 (216)
T PLN03110 11 YLFKIVLIGDSGVGKSNILSRFTRN-EFCLESKSTIGVEFATRTLQVEGKT---------------VKAQIWDTAGQER- 73 (216)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCceeEEEEEEEEEECCEE---------------EEEEEEECCCcHH-
Confidence 3479999999999999999999943 3333344544445545555555432 4689999999743
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+.......++.+|++++|+|.+
T Consensus 74 ------~~~~~~~~~~~~~~~ilv~d~~ 95 (216)
T PLN03110 74 ------YRAITSAYYRGAVGALLVYDIT 95 (216)
T ss_pred ------HHHHHHHHhCCCCEEEEEEECC
Confidence 2234556789999999999975
No 110
>PTZ00369 Ras-like protein; Provisional
Probab=99.46 E-value=8.5e-13 Score=121.28 Aligned_cols=84 Identities=17% Similarity=0.134 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.||||||||++++.++. .. ..+..|+.+.....+.+++.. ..+.+|||||.....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 67 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNH-FI-DEYDPTIEDSYRKQCVIDEET---------------CLLDILDTAGQEEYS 67 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCC-CC-cCcCCchhhEEEEEEEECCEE---------------EEEEEEeCCCCccch
Confidence 3799999999999999999999433 21 223223323233334444422 458899999985432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ....+++.+|++++|+|+++
T Consensus 68 ~-------l~~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 68 A-------MRDQYMRTGQGFLCVYSITS 88 (189)
T ss_pred h-------hHHHHhhcCCEEEEEEECCC
Confidence 2 34456889999999999754
No 111
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.46 E-value=1.1e-12 Score=117.27 Aligned_cols=83 Identities=17% Similarity=0.175 Sum_probs=52.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||++++.++. ......|....+.......+.+. ...+.+|||||....
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~-- 62 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDG-YEPQQLSTYALTLYKHNAKFEGK---------------TILVDFWDTAGQERF-- 62 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCcCCceeeEEEEEEEEECCE---------------EEEEEEEeCCCchhh--
Confidence 489999999999999999999433 22111111111111111222221 145889999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++++|++++|+|++
T Consensus 63 -----~~~~~~~~~~~d~~i~v~d~~ 83 (161)
T cd04124 63 -----QTMHASYYHKAHACILVFDVT 83 (161)
T ss_pred -----hhhhHHHhCCCCEEEEEEECC
Confidence 224456789999999999975
No 112
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.46 E-value=2.3e-12 Score=114.39 Aligned_cols=83 Identities=19% Similarity=0.118 Sum_probs=54.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+|++..... ...|.+........+.+.+.. ..+.+|||||....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~v~~~~~~---------------~~~~i~D~~G~~~~-- 63 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSE-NQESTIGAAFLTQTVNLDDTT---------------VKFEIWDTAGQERY-- 63 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCC-CCCCccceeEEEEEEEECCEE---------------EEEEEEeCCchHHH--
Confidence 689999999999999999999544322 222322222222334443321 45889999996322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++++|++++|+|+.
T Consensus 64 -----~~~~~~~~~~~~~~i~v~d~~ 84 (163)
T cd01860 64 -----RSLAPMYYRGAAAAIVVYDIT 84 (163)
T ss_pred -----HHHHHHHhccCCEEEEEEECc
Confidence 122334678899999999975
No 113
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.46 E-value=2e-12 Score=114.44 Aligned_cols=82 Identities=18% Similarity=0.133 Sum_probs=56.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.||||||||+|+|++... +..+..++.+........++.. ..+.+|||||.....
T Consensus 1 ~ki~~~G~~~~GKTsl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~- 62 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGED---------------VQLNILDTAGQEDYA- 62 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCC--ccccCCcchhhEEEEEEECCEE---------------EEEEEEECCChhhhh-
Confidence 4899999999999999999994332 2345555544444434443322 458999999974322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......++.+|++++|+|+.
T Consensus 63 ------~~~~~~~~~~~~~i~v~d~~ 82 (164)
T cd04139 63 ------AIRDNYHRSGEGFLLVFSIT 82 (164)
T ss_pred ------HHHHHHhhcCCEEEEEEECC
Confidence 23345678899999999964
No 114
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.46 E-value=2.6e-12 Score=114.30 Aligned_cols=85 Identities=22% Similarity=0.230 Sum_probs=54.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCcc-ccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.+|||||||+++|.++......++..|+ .+.....+.+++.. ..++.+|||||....
T Consensus 1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~l~i~Dt~G~~~~- 65 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDN--------------TVELFIFDSAGQELY- 65 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCC--------------EEEEEEEECCCHHHH-
Confidence 48999999999999999999843222233343333 23222223332111 156999999996322
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......+++||++++|+|.+
T Consensus 66 ------~~~~~~~~~~~d~ii~v~d~~ 86 (164)
T cd04101 66 ------SDMVSNYWESPSVFILVYDVS 86 (164)
T ss_pred ------HHHHHHHhCCCCEEEEEEECc
Confidence 123345678999999999975
No 115
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.45 E-value=9.4e-13 Score=121.60 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=97.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCC-CCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~-p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..+||+++|.++||||||++++.+ .... .++ |..+.+.....+.+++.. ..+.+|||||...
T Consensus 5 ~~~KivviG~~~vGKTsll~~~~~-~~~~-~~~~~t~~~~~~~~~i~~~~~~---------------~~l~iwDt~G~~~ 67 (189)
T cd04121 5 YLLKFLLVGDSDVGKGEILASLQD-GSTE-SPYGYNMGIDYKTTTILLDGRR---------------VKLQLWDTSGQGR 67 (189)
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc-CCCC-CCCCCcceeEEEEEEEEECCEE---------------EEEEEEeCCCcHH
Confidence 347999999999999999999994 3322 222 233333333334444422 4689999999843
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
. ......+++.||++++|+|+++... ++ .
T Consensus 68 ~-------~~l~~~~~~~ad~illVfD~t~~~S-------------f~---------------~---------------- 96 (189)
T cd04121 68 F-------CTIFRSYSRGAQGIILVYDITNRWS-------------FD---------------G---------------- 96 (189)
T ss_pred H-------HHHHHHHhcCCCEEEEEEECcCHHH-------------HH---------------H----------------
Confidence 2 2244567899999999999754221 11 1
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
+...++.+.+ . ....|+++++||.| +... .....++++++++..+.++
T Consensus 97 ----~~~w~~~i~~-----------------------~--~~~~piilVGNK~D--L~~~-~~v~~~~~~~~a~~~~~~~ 144 (189)
T cd04121 97 ----IDRWIKEIDE-----------------------H--APGVPKILVGNRLH--LAFK-RQVATEQAQAYAERNGMTF 144 (189)
T ss_pred ----HHHHHHHHHH-----------------------h--CCCCCEEEEEECcc--chhc-cCCCHHHHHHHHHHcCCEE
Confidence 0011111100 0 13469999999995 4332 2345677888998888999
Q ss_pred EEechhhhHhhcC
Q 014539 294 VTISAQVEAELTE 306 (423)
Q Consensus 294 v~~Sa~~e~~i~~ 306 (423)
+.+||+.+.++.+
T Consensus 145 ~e~SAk~g~~V~~ 157 (189)
T cd04121 145 FEVSPLCNFNITE 157 (189)
T ss_pred EEecCCCCCCHHH
Confidence 9999999877643
No 116
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.45 E-value=1.2e-12 Score=116.96 Aligned_cols=83 Identities=19% Similarity=0.254 Sum_probs=55.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.||||||||++++.. ... ...++.++.......+.+.+. ...+.+|||||......
T Consensus 1 ki~vvG~~~~GKtsli~~~~~-~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~D~~g~~~~~~- 62 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLT-KRF-IGEYDPNLESLYSRQVTIDGE---------------QVSLEILDTAGQQQADT- 62 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHh-Ccc-ccccCCChHHhceEEEEECCE---------------EEEEEEEECCCCccccc-
Confidence 589999999999999999983 322 344555543333333333331 14588999999864211
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++.+|++++|+|+++
T Consensus 63 -----~~~~~~~~~~d~~i~v~d~~~ 83 (165)
T cd04146 63 -----EQLERSIRWADGFVLVYSITD 83 (165)
T ss_pred -----chHHHHHHhCCEEEEEEECCC
Confidence 124456889999999999754
No 117
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.44 E-value=1.7e-12 Score=117.48 Aligned_cols=83 Identities=17% Similarity=0.117 Sum_probs=57.5
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||++||.+|||||||+|++. .........|....+.....+.+.+.. .++.+|||||..+.
T Consensus 2 ki~ivG~~~vGKTsli~~~~-~~~f~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~--- 62 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFC-KDVFDKNYKATIGVDFEMERFEILGVP---------------FSLQLWDTAGQERF--- 62 (170)
T ss_pred EEEEECCCCCCHHHHHHHHh-cCCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEeCCChHHH---
Confidence 79999999999999999999 444433333443334433444444422 46999999998432
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+++||++++|+|+++
T Consensus 63 ----~~~~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 63 ----KCIASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred ----HhhHHHHhcCCCEEEEEEECcC
Confidence 2234566899999999999753
No 118
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.44 E-value=1.2e-12 Score=115.14 Aligned_cols=81 Identities=17% Similarity=0.185 Sum_probs=59.1
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||+++|.||||||||+|+|++.. ..+.++.++.+........++.. ..+.+||+||...
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~---- 59 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGT--FVEEYDPTIEDSYRKTIVVDGET---------------YTLDILDTAGQEE---- 59 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCC--CCcCcCCChhHeEEEEEEECCEE---------------EEEEEEECCChHH----
Confidence 58999999999999999999544 45556666666655555554321 4689999999743
Q ss_pred ccchhhHHhhhhhhcceEEEEEecc
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
........++.+|++++|+|..
T Consensus 60 ---~~~~~~~~~~~~~~~i~v~d~~ 81 (160)
T cd00876 60 ---FSAMRDLYIRQGDGFILVYSIT 81 (160)
T ss_pred ---HHHHHHHHHhcCCEEEEEEECC
Confidence 2223445678899999999964
No 119
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.44 E-value=1.4e-12 Score=117.79 Aligned_cols=81 Identities=19% Similarity=0.276 Sum_probs=54.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++..... + ..|.......+.+.+ ..+.+|||||...
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~~---~-~~t~g~~~~~~~~~~-----------------~~l~l~D~~G~~~- 70 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDIDT---I-SPTLGFQIKTLEYEG-----------------YKLNIWDVGGQKT- 70 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCCC---c-CCccccceEEEEECC-----------------EEEEEEECCCCHH-
Confidence 34799999999999999999999542211 1 112222222233322 4689999999743
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.+|++++|+|+++
T Consensus 71 ------~~~~~~~~~~~~d~~i~v~d~~~ 93 (173)
T cd04154 71 ------LRPYWRNYFESTDALIWVVDSSD 93 (173)
T ss_pred ------HHHHHHHHhCCCCEEEEEEECCC
Confidence 22244567889999999999753
No 120
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.44 E-value=2.7e-12 Score=117.37 Aligned_cols=85 Identities=25% Similarity=0.278 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.+|||||||+|++.+... +...|+.+.+...-.+.+.+. ....+.+|||||...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~--------------~~~~l~l~Dt~G~~~-- 64 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEF--VNTVPTKGFNTEKIKVSLGNS--------------KGITFHFWDVGGQEK-- 64 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCc--CCcCCccccceeEEEeeccCC--------------CceEEEEEECCCcHh--
Confidence 47999999999999999999984432 233444333332222222110 124699999999732
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+...+++||++++|+|+++
T Consensus 65 -----~~~~~~~~~~~~d~ii~v~D~~~ 87 (183)
T cd04152 65 -----LRPLWKSYTRCTDGIVFVVDSVD 87 (183)
T ss_pred -----HHHHHHHHhccCCEEEEEEECCC
Confidence 22234556889999999999753
No 121
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.43 E-value=3.6e-12 Score=120.43 Aligned_cols=82 Identities=17% Similarity=0.180 Sum_probs=52.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCcc-ccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.||||||||+++++++.. ....++.+. .+.....+.+.+. ...+.+|||||..
T Consensus 1 ~KI~lvG~~gvGKTsLi~~~~~~~~-~~~~~~~t~~~~~~~~~i~~~~~---------------~~~l~i~Dt~G~~--- 61 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGEY-DDHAYDASGDDDTYERTVSVDGE---------------ESTLVVIDHWEQE--- 61 (221)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCc-CccCcCCCccccceEEEEEECCE---------------EEEEEEEeCCCcc---
Confidence 4899999999999999999974332 212222221 1333333444332 2569999999985
Q ss_pred CcccchhhHHhhhhh-hcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIR-EVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir-~aD~il~Vvd~~~ 163 (423)
..+.. ..++ ++|++++|+|+++
T Consensus 62 ---~~~~~---~~~~~~ad~iilV~d~td 84 (221)
T cd04148 62 ---MWTED---SCMQYQGDAFVVVYSVTD 84 (221)
T ss_pred ---hHHHh---HHhhcCCCEEEEEEECCC
Confidence 11111 2344 8999999999754
No 122
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.43 E-value=1.8e-12 Score=117.44 Aligned_cols=80 Identities=23% Similarity=0.300 Sum_probs=57.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||+++|+++.... . ..|...+...+.+.+ .++.+|||||...
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~--~--~~t~~~~~~~~~~~~-----------------~~~~l~D~~G~~~-- 71 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVH--T--SPTIGSNVEEIVYKN-----------------IRFLMWDIGGQES-- 71 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCC--c--CCccccceEEEEECC-----------------eEEEEEECCCCHH--
Confidence 4799999999999999999998544321 2 234444444444433 5699999999832
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+..+++.||++++|+|+++
T Consensus 72 -----~~~~~~~~~~~~d~vi~V~D~s~ 94 (174)
T cd04153 72 -----LRSSWNTYYTNTDAVILVIDSTD 94 (174)
T ss_pred -----HHHHHHHHhhcCCEEEEEEECCC
Confidence 33345667899999999999753
No 123
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.43 E-value=1.6e-12 Score=117.01 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=55.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||++++++.. ......|..+.+.....+.+++.. ..+.+|||||......
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 66 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGR-FPERTEATIGVDFRERTVEIDGER---------------IKVQLWDTAGQERFRK 66 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-CCCccccceeEEEEEEEEEECCeE---------------EEEEEEeCCChHHHHH
Confidence 689999999999999999999433 222222333333333344444422 4689999999742211
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++|++++|+|+++
T Consensus 67 ------~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T cd04115 67 ------SMVQHYYRNVHAVVFVYDVTN 87 (170)
T ss_pred ------hhHHHhhcCCCEEEEEEECCC
Confidence 123345789999999999753
No 124
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.43 E-value=5.7e-12 Score=112.65 Aligned_cols=84 Identities=14% Similarity=0.166 Sum_probs=58.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.+|||||||+++|++ ........|+.+.+.....+.+.+.. ..+.+|||||....
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~D~~g~~~~- 69 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQ-GLFPPGQGATIGVDFMIKTVEIKGEK---------------IKLQIWDTAGQERF- 69 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHh-CCCCCCCCCceeeEEEEEEEEECCEE---------------EEEEEEECCCcHHH-
Confidence 37999999999999999999994 33333334444444544445554422 35889999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++.+|++++|+|++
T Consensus 70 ------~~~~~~~~~~~d~~i~v~d~~ 90 (169)
T cd04114 70 ------RSITQSYYRSANALILTYDIT 90 (169)
T ss_pred ------HHHHHHHhcCCCEEEEEEECc
Confidence 223456788999999999974
No 125
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.43 E-value=6.7e-12 Score=120.71 Aligned_cols=83 Identities=12% Similarity=0.130 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|.+|||||||+++++++ ... ..+..|+.+.....+.+.+.. .++.||||||.....
T Consensus 1 ~KVvvlG~~gvGKTSLi~r~~~~-~f~-~~y~pTi~d~~~k~~~i~~~~---------------~~l~I~Dt~G~~~~~- 62 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGG-RFE-EQYTPTIEDFHRKLYSIRGEV---------------YQLDILDTSGNHPFP- 62 (247)
T ss_pred CEEEEECcCCCCHHHHHHHHHcC-CCC-CCCCCChhHhEEEEEEECCEE---------------EEEEEEECCCChhhh-
Confidence 47999999999999999999843 332 234444445555555555432 458899999974322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++|++++|+|+.+
T Consensus 63 ------~~~~~~~~~ad~iIlVfdv~~ 83 (247)
T cd04143 63 ------AMRRLSILTGDVFILVFSLDN 83 (247)
T ss_pred ------HHHHHHhccCCEEEEEEeCCC
Confidence 122335788999999999753
No 126
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.42 E-value=1.4e-12 Score=116.22 Aligned_cols=85 Identities=18% Similarity=0.112 Sum_probs=58.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+.|+++|.+|+|||||+|+|++.. ......+++|.+.....+..... ....+.+|||||...
T Consensus 1 ~~i~iiG~~~~GKtsli~~l~~~~-~~~~~~~~~t~~~~~~~~~~~~~--------------~~~~~~iiDtpG~~~--- 62 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTN-VAAGEAGGITQHIGAFEVPAEVL--------------KIPGITFIDTPGHEA--- 62 (168)
T ss_pred CEEEEEecCCCCHHHHHHHHHhcc-cccccCCCeEEeeccEEEecccC--------------CcceEEEEeCCCcHH---
Confidence 369999999999999999999543 44445566776655444443200 014699999999732
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.||++++|+|+++
T Consensus 63 ----~~~~~~~~~~~~d~il~v~d~~~ 85 (168)
T cd01887 63 ----FTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred ----HHHHHHHHHhhcCEEEEEEECCC
Confidence 22223445788999999999853
No 127
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.42 E-value=2.1e-12 Score=118.55 Aligned_cols=88 Identities=23% Similarity=0.258 Sum_probs=60.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+++|.+|||||||+|+|++.. .+.+++.+++|++...... + .++.||||||+..
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~---~-----------------~~l~l~DtpG~~~ 82 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEV---N-----------------DKLRLVDLPGYGY 82 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEec---C-----------------CeEEEeCCCCCCC
Confidence 45899999999999999999999654 5777888888876543322 1 3599999999754
Q ss_pred CCCcc---cc---hhhHHhhhhhhcceEEEEEecc
Q 014539 134 GASQG---EG---LGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~---~~---l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..... +. +...++.....++++++|+|+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 117 (196)
T PRK00454 83 AKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSR 117 (196)
T ss_pred cCCCchHHHHHHHHHHHHHHhCccceEEEEEEecC
Confidence 32111 11 1123334444557888888864
No 128
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.42 E-value=2.2e-12 Score=115.77 Aligned_cols=83 Identities=19% Similarity=0.164 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+++++. . ...+..|+.+.....+.+++.. ..+.+|||||......
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 64 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNV-F-IESYDPTIEDSYRKQVEIDGRQ---------------CDLEILDTAGTEQFTA 64 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC-C-CcccCCcchheEEEEEEECCEE---------------EEEEEEeCCCcccchh
Confidence 689999999999999999999443 2 2233333333333333343311 4589999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.+|++++|+|+.+
T Consensus 65 -------~~~~~~~~~~~~vlv~~~~~ 84 (168)
T cd04177 65 -------MRELYIKSGQGFLLVYSVTS 84 (168)
T ss_pred -------hhHHHHhhCCEEEEEEECCC
Confidence 23345678999999999753
No 129
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.41 E-value=3.4e-12 Score=120.67 Aligned_cols=79 Identities=18% Similarity=0.164 Sum_probs=52.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+++++++. .. ...| |+.......... ...+.+|||||......
T Consensus 1 ~KIvivG~~~vGKTSLi~r~~~~~-f~-~~~~--Tig~~~~~~~~~-----------------~~~l~iwDt~G~e~~~~ 59 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERR-FK-DTVS--TVGGAFYLKQWG-----------------PYNISIWDTAGREQFHG 59 (220)
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC-CC-CCCC--ccceEEEEEEee-----------------EEEEEEEeCCCcccchh
Confidence 489999999999999999999443 22 1122 322221111111 24689999999854322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++++|++++|+|+++
T Consensus 60 -------l~~~~~~~ad~~IlV~Dvt~ 79 (220)
T cd04126 60 -------LGSMYCRGAAAVILTYDVSN 79 (220)
T ss_pred -------hHHHHhccCCEEEEEEECCC
Confidence 23345789999999999764
No 130
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.41 E-value=2.3e-12 Score=118.31 Aligned_cols=83 Identities=13% Similarity=0.105 Sum_probs=54.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccc-eEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP-NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~-~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
+||+++|.||||||||+|+++ ......+++..|+... ....+.+++.. ..+.+|||||.....
T Consensus 1 ~ki~vvG~~~vGKSsLi~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~ 64 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYV-HHRFLVGPYQNTIGAAFVAKRMVVGERV---------------VTLGIWDTAGSERYE 64 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHH-hCCcCCcCcccceeeEEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 489999999999999999999 4444333343332221 22334555422 357899999974322
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .....++.+|++++|+|+.
T Consensus 65 ~-------~~~~~~~~~d~iilv~d~~ 84 (193)
T cd04118 65 A-------MSRIYYRGAKAAIVCYDLT 84 (193)
T ss_pred h-------hhHhhcCCCCEEEEEEECC
Confidence 1 2234567899999999974
No 131
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.41 E-value=1.7e-12 Score=117.62 Aligned_cols=151 Identities=15% Similarity=0.129 Sum_probs=91.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||++++.++. .. ..+..|+.+.....+.+.+.. ..+.+|||||.....
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~-f~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~- 64 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHS-FP-DYHDPTIEDAYKQQARIDNEP---------------ALLDILDTAGQAEFT- 64 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCC-CC-CCcCCcccceEEEEEEECCEE---------------EEEEEEeCCCchhhH-
Confidence 689999999999999999999443 22 122222222222233443322 468999999985432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
......++.+|++++|+|+.+... ++.+ .
T Consensus 65 ------~l~~~~~~~~d~~ilv~d~~~~~S-------------f~~~------------~-------------------- 93 (172)
T cd04141 65 ------AMRDQYMRCGEGFIICYSVTDRHS-------------FQEA------------S-------------------- 93 (172)
T ss_pred ------HHhHHHhhcCCEEEEEEECCchhH-------------HHHH------------H--------------------
Confidence 234456889999999999754321 1100 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
...+.+ .+ .......|+++++||.| +.+. .....++..++++..+.+++++
T Consensus 94 ---~~~~~i----~~-------------------~~~~~~~piilvgNK~D--l~~~-~~v~~~~~~~~a~~~~~~~~e~ 144 (172)
T cd04141 94 ---EFKKLI----TR-------------------VRLTEDIPLVLVGNKVD--LESQ-RQVTTEEGRNLAREFNCPFFET 144 (172)
T ss_pred ---HHHHHH----HH-------------------hcCCCCCCEEEEEEChh--hhhc-CccCHHHHHHHHHHhCCEEEEE
Confidence 000000 00 00013579999999995 4322 2233456677777778899999
Q ss_pred chhhhHhhc
Q 014539 297 SAQVEAELT 305 (423)
Q Consensus 297 Sa~~e~~i~ 305 (423)
||+.+.++.
T Consensus 145 Sa~~~~~v~ 153 (172)
T cd04141 145 SAALRHYID 153 (172)
T ss_pred ecCCCCCHH
Confidence 999987764
No 132
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.41 E-value=1.6e-12 Score=119.82 Aligned_cols=97 Identities=22% Similarity=0.280 Sum_probs=63.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhc------CcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~------~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
.+|+++|.+|+|||||+|+|++. .....+..+++|++.....+.+..... ......+ .....++.+|||||
T Consensus 1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~i~DtpG 77 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKH--LRELINP-GEENLQITLVDCPG 77 (192)
T ss_pred CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEeccccc--ccccccc-cccCceEEEEECCC
Confidence 37999999999999999999952 222334456788877766554431000 0000000 01125799999999
Q ss_pred CcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 131 l~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .+...+...++.+|++++|+|+.+
T Consensus 78 ~~-------~~~~~~~~~~~~~d~vi~VvD~~~ 103 (192)
T cd01889 78 HA-------SLIRTIIGGAQIIDLMLLVVDATK 103 (192)
T ss_pred cH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 72 344566677788999999999853
No 133
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.41 E-value=7.3e-12 Score=114.60 Aligned_cols=79 Identities=22% Similarity=0.303 Sum_probs=59.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.+|||||||+|+|++.... ....|..+..+.+.+.+ ..+.+|||||...
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~----~~~~T~~~~~~~i~~~~-----------------~~~~l~D~~G~~~-- 75 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA----QHVPTLHPTSEELTIGN-----------------IKFKTFDLGGHEQ-- 75 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc----ccCCccCcceEEEEECC-----------------EEEEEEECCCCHH--
Confidence 589999999999999999999954431 23346666666666654 4589999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
....+..+++.+|++++|+|++
T Consensus 76 -----~~~~~~~~~~~ad~iilV~D~~ 97 (190)
T cd00879 76 -----ARRLWKDYFPEVDGIVFLVDAA 97 (190)
T ss_pred -----HHHHHHHHhccCCEEEEEEECC
Confidence 1223456789999999999975
No 134
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.41 E-value=3.1e-12 Score=114.30 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=54.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||++++..+.. .+..| |...+...+...+ .++.+|||||..+
T Consensus 1 ~kv~~~G~~~~GKTsli~~l~~~~~--~~~~p--t~g~~~~~~~~~~-----------------~~~~l~D~~G~~~--- 56 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 56 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC--cccCC--CCCcceEEEEECC-----------------EEEEEEECCCCHh---
Confidence 5899999999999999999973332 12233 2233333333322 5699999999843
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+..++++||++++|+|+++
T Consensus 57 ----~~~~~~~~~~~ad~~i~v~D~~~ 79 (159)
T cd04150 57 ----IRPLWRHYFQNTQGLIFVVDSND 79 (159)
T ss_pred ----HHHHHHHHhcCCCEEEEEEeCCC
Confidence 22344567899999999999753
No 135
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.41 E-value=1.3e-12 Score=115.85 Aligned_cols=79 Identities=23% Similarity=0.356 Sum_probs=53.9
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.||||||||+|++++.... ...| |.......+..+. ...+.+|||||...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~--~~~~--t~~~~~~~~~~~~----------------~~~l~i~D~~G~~~---- 56 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELV--TTIP--TVGFNVEMLQLEK----------------HLSLTVWDVGGQEK---- 56 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcc--cccC--ccCcceEEEEeCC----------------ceEEEEEECCCCHh----
Confidence 5899999999999999999955432 2222 2222233333321 14699999999742
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+...++++|++++|+|+++
T Consensus 57 ---~~~~~~~~~~~~~~iv~v~D~~~ 79 (160)
T cd04156 57 ---MRTVWKCYLENTDGLVYVVDSSD 79 (160)
T ss_pred ---HHHHHHHHhccCCEEEEEEECCc
Confidence 22345567899999999999753
No 136
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.40 E-value=3.5e-12 Score=113.23 Aligned_cols=78 Identities=24% Similarity=0.300 Sum_probs=54.0
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||+++|.||||||||+|+|+.+... ... .|...+...+...+ .++.+|||||...
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~--~~~--~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~---- 55 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVV--TTI--PTIGFNVETVTYKN-----------------LKFQVWDLGGQTS---- 55 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCc--CcC--CccCcCeEEEEECC-----------------EEEEEEECCCCHH----
Confidence 5899999999999999999844322 222 23333333333322 5699999999843
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+...++.||++++|+|+++
T Consensus 56 ---~~~~~~~~~~~~~~ii~v~d~~~ 78 (158)
T cd04151 56 ---IRPYWRCYYSNTDAIIYVVDSTD 78 (158)
T ss_pred ---HHHHHHHHhcCCCEEEEEEECCC
Confidence 22345567889999999999753
No 137
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.40 E-value=3.6e-12 Score=114.67 Aligned_cols=84 Identities=13% Similarity=0.031 Sum_probs=51.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.+|||||||+|+++.+. ..... ..|.........+... .....+.+|||||......
T Consensus 1 ~ki~vvG~~~vGKTsli~~~~~~~-~~~~~--~~t~~~~~~~~~~~~~-------------~~~~~l~i~Dt~G~~~~~~ 64 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGE-FEKKY--VATLGVEVHPLDFHTN-------------RGKIRFNVWDTAGQEKFGG 64 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCC--CCceeeEEEEEEEEEC-------------CEEEEEEEEECCCChhhcc
Confidence 489999999999999999998332 21111 1232222222211110 0124689999999854322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.+|++++|+|+++
T Consensus 65 -------~~~~~~~~~d~~i~v~d~~~ 84 (166)
T cd00877 65 -------LRDGYYIGGQCAIIMFDVTS 84 (166)
T ss_pred -------ccHHHhcCCCEEEEEEECCC
Confidence 12234678999999999753
No 138
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.40 E-value=1.9e-12 Score=117.24 Aligned_cols=82 Identities=23% Similarity=0.282 Sum_probs=56.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceec---------------CCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs---------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
+|+++|.||+|||||+|+|++....... ..+++|.+.....+... ...
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~ 63 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWP-----------------DRR 63 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeC-----------------CEE
Confidence 4899999999999999999965433211 12234444433333332 256
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||+.. +...+...++.+|++++|+|+++
T Consensus 64 ~~liDtpG~~~-------~~~~~~~~~~~~d~~i~v~d~~~ 97 (189)
T cd00881 64 VNFIDTPGHED-------FSSEVIRGLSVSDGAILVVDANE 97 (189)
T ss_pred EEEEeCCCcHH-------HHHHHHHHHHhcCEEEEEEECCC
Confidence 99999999742 33456677889999999999753
No 139
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.40 E-value=3.5e-12 Score=115.11 Aligned_cols=80 Identities=18% Similarity=0.241 Sum_probs=54.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+++|+.+.. ....|.++.+ ...+.... ..+.+|||||..+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~--~~~~~t~g~~--~~~~~~~~-----------------~~~~l~Dt~G~~~~- 66 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQS--VTTIPTVGFN--VETVTYKN-----------------VKFNVWDVGGQDKI- 66 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCC--ccccCCcccc--eEEEEECC-----------------EEEEEEECCCCHHH-
Confidence 47999999999999999999984332 2223333222 22232222 56999999998432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+++||++++|+|+++
T Consensus 67 ------~~~~~~~~~~a~~ii~v~D~t~ 88 (168)
T cd04149 67 ------RPLWRHYYTGTQGLIFVVDSAD 88 (168)
T ss_pred ------HHHHHHHhccCCEEEEEEeCCc
Confidence 2234556899999999999753
No 140
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.40 E-value=7.1e-12 Score=113.14 Aligned_cols=85 Identities=13% Similarity=0.037 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccc-cceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI-EPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~-~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...||+++|.+|||||||+++++++. ..+.++..|+. +.....+.+++.. ..+.+|||+|...
T Consensus 3 ~~~kv~~vG~~~vGKTsli~~~~~~~-f~~~~~~~T~~~~~~~~~~~~~~~~---------------~~l~~~d~~g~~~ 66 (169)
T cd01892 3 NVFLCFVLGAKGSGKSALLRAFLGRS-FSLNAYSPTIKPRYAVNTVEVYGQE---------------KYLILREVGEDEV 66 (169)
T ss_pred eEEEEEEECCCCCcHHHHHHHHhCCC-CCcccCCCccCcceEEEEEEECCeE---------------EEEEEEecCCccc
Confidence 34799999999999999999999544 33234433332 2223334444422 3588999999854
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
... ....++++||++++|+|++
T Consensus 67 ~~~-------~~~~~~~~~d~~llv~d~~ 88 (169)
T cd01892 67 AIL-------LNDAELAACDVACLVYDSS 88 (169)
T ss_pred ccc-------cchhhhhcCCEEEEEEeCC
Confidence 322 2334578999999999975
No 141
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.40 E-value=1.1e-12 Score=114.29 Aligned_cols=74 Identities=20% Similarity=0.191 Sum_probs=48.0
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||++||.||||||||+|+|++.... ++. |. + +.+ ...+|||||....
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~----~~~-t~----~-~~~--------------------~~~~iDt~G~~~~--- 48 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL----YKK-TQ----A-VEY--------------------NDGAIDTPGEYVE--- 48 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc----ccc-ce----e-EEE--------------------cCeeecCchhhhh---
Confidence 7999999999999999999954321 111 11 1 111 1268999997311
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
...........+++||++++|+|+++.
T Consensus 49 ~~~~~~~~~~~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 49 NRRLYSALIVTAADADVIALVQSATDP 75 (142)
T ss_pred hHHHHHHHHHHhhcCCEEEEEecCCCC
Confidence 111122233458999999999998643
No 142
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.40 E-value=3.8e-12 Score=116.61 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=56.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||++++.++ .......|....+.....+.+++.. ..+.+|||+|.....
T Consensus 1 ~Ki~vlG~~~vGKTsLi~~~~~~-~f~~~~~~T~g~~~~~~~i~~~~~~---------------~~l~iwDt~G~~~~~- 63 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEG-EFDEDYIQTLGVNFMEKTISIRGTE---------------ITFSIWDLGGQREFI- 63 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCchhHH-
Confidence 48999999999999999999843 3322223332223323345554422 468999999984332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......+++||++++|+|+++
T Consensus 64 ------~~~~~~~~~a~~iilv~D~t~ 84 (182)
T cd04128 64 ------NMLPLVCNDAVAILFMFDLTR 84 (182)
T ss_pred ------HhhHHHCcCCCEEEEEEECcC
Confidence 233456899999999999754
No 143
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.40 E-value=1.5e-12 Score=115.36 Aligned_cols=80 Identities=23% Similarity=0.244 Sum_probs=52.2
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.||||||||+|+|++... ....+ ..|.......+... ...+.+|||||..+..
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~-~~~~~-~~t~g~~~~~~~~~-----------------~~~~~l~Dt~G~~~~~-- 59 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENA-QSQII-VPTVGFNVESFEKG-----------------NLSFTAFDMSGQGKYR-- 59 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCC-Cccee-cCccccceEEEEEC-----------------CEEEEEEECCCCHhhH--
Confidence 489999999999999999995432 11111 12222222222222 2568999999974322
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+++++|++++|+|+++
T Consensus 60 -----~~~~~~~~~~d~ii~v~D~~~ 80 (162)
T cd04157 60 -----GLWEHYYKNIQGIIFVIDSSD 80 (162)
T ss_pred -----HHHHHHHccCCEEEEEEeCCc
Confidence 234456789999999999753
No 144
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.40 E-value=4e-12 Score=116.46 Aligned_cols=80 Identities=23% Similarity=0.328 Sum_probs=59.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||+|+|++..... ..+|..++.+.+.+.+ .++.+|||||....
T Consensus 17 ~~~i~ivG~~~~GKTsli~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~~~D~~G~~~~- 74 (184)
T smart00178 17 HAKILFLGLDNAGKTTLLHMLKNDRLAQ----HQPTQHPTSEELAIGN-----------------IKFTTFDLGGHQQA- 74 (184)
T ss_pred cCEEEEECCCCCCHHHHHHHHhcCCCcc----cCCccccceEEEEECC-----------------EEEEEEECCCCHHH-
Confidence 4899999999999999999999654322 2346666666665544 56899999998432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+..++++||++++|+|+++
T Consensus 75 ------~~~~~~~~~~ad~ii~vvD~~~ 96 (184)
T smart00178 75 ------RRLWKDYFPEVNGIVYLVDAYD 96 (184)
T ss_pred ------HHHHHHHhCCCCEEEEEEECCc
Confidence 2344567889999999999853
No 145
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.39 E-value=9.2e-12 Score=112.82 Aligned_cols=82 Identities=18% Similarity=0.111 Sum_probs=55.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|.||||||||+|++++. ... ..++.++.+.....+.++... ..+.+|||||.....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~-~~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~g~~~~~- 63 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG-HFV-ESYYPTIENTFSKIIRYKGQD---------------YHLEIVDTAGQDEYS- 63 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-CCc-cccCcchhhhEEEEEEECCEE---------------EEEEEEECCChHhhH-
Confidence 58999999999999999999943 333 333334444444444443311 358899999974321
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......+..+|++++|+|++
T Consensus 64 ------~~~~~~~~~~~~~i~v~d~~ 83 (180)
T cd04137 64 ------ILPQKYSIGIHGYILVYSVT 83 (180)
T ss_pred ------HHHHHHHhhCCEEEEEEECC
Confidence 12234577899999999975
No 146
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.39 E-value=1.1e-11 Score=114.91 Aligned_cols=82 Identities=16% Similarity=0.138 Sum_probs=56.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||+++|.+|||||||++++++... ...++.|+.+.....+.+.+.. ..+.||||||......
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~D~~G~~~~~~- 62 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVS---------------LTLDILDTSGSYSFPA- 62 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCC--CccCCCchhhheeEEEEECCEE---------------EEEEEEECCCchhhhH-
Confidence 689999999999999999995432 2334445544444445444422 4588999999753321
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.||++++|+|+++
T Consensus 63 ------~~~~~~~~ad~vilv~d~~~ 82 (198)
T cd04147 63 ------MRKLSIQNSDAFALVYAVDD 82 (198)
T ss_pred ------HHHHHhhcCCEEEEEEECCC
Confidence 22346789999999999753
No 147
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=3e-12 Score=116.04 Aligned_cols=153 Identities=15% Similarity=0.163 Sum_probs=104.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+||.|+|.+|||||.|+-++. .....-+......+|.....+.+.+++ ..+++|||+|+.+
T Consensus 7 dylFKiiliGds~VGKtCL~~Rf~-~~~f~e~~~sTIGVDf~~rt~e~~gk~---------------iKlQIWDTAGQER 70 (205)
T KOG0084|consen 7 DYLFKIILIGDSGVGKTCLLLRFK-DDTFTESYISTIGVDFKIRTVELDGKT---------------IKLQIWDTAGQER 70 (205)
T ss_pred ceEEEEEEECCCCcChhhhhhhhc-cCCcchhhcceeeeEEEEEEeeecceE---------------EEEEeeeccccHH
Confidence 345899999999999999999999 444333333344445555566776655 4699999999954
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
.+ ..+.+++|+|++||+|.|+++..+. +....|+
T Consensus 71 Fr-------tit~syYR~ahGii~vyDiT~~~SF----------------------------~~v~~Wi----------- 104 (205)
T KOG0084|consen 71 FR-------TITSSYYRGAHGIIFVYDITKQESF----------------------------NNVKRWI----------- 104 (205)
T ss_pred Hh-------hhhHhhccCCCeEEEEEEcccHHHh----------------------------hhHHHHH-----------
Confidence 44 4788999999999999997643211 1111111
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc-
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG- 292 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~- 292 (423)
+++.++. ...-|.++|.||+| +.+. .....++.++++.+.+.+
T Consensus 105 ---------~Ei~~~~------------------------~~~v~~lLVGNK~D--l~~~-~~v~~~~a~~fa~~~~~~~ 148 (205)
T KOG0084|consen 105 ---------QEIDRYA------------------------SENVPKLLVGNKCD--LTEK-RVVSTEEAQEFADELGIPI 148 (205)
T ss_pred ---------HHhhhhc------------------------cCCCCeEEEeeccc--cHhh-eecCHHHHHHHHHhcCCcc
Confidence 1111100 12358899999995 4443 345567788888888988
Q ss_pred EEEechhhhHhh
Q 014539 293 RVTISAQVEAEL 304 (423)
Q Consensus 293 ~v~~Sa~~e~~i 304 (423)
+.++||+...++
T Consensus 149 f~ETSAK~~~NV 160 (205)
T KOG0084|consen 149 FLETSAKDSTNV 160 (205)
T ss_pred eeecccCCccCH
Confidence 999999987766
No 148
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.39 E-value=2.9e-12 Score=117.38 Aligned_cols=88 Identities=20% Similarity=0.197 Sum_probs=63.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..+.|+++|++|||||||+|+|+|+. .+.+|..|+.|+..|.-.+. .++.|+|.||+--
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~--------------------~~~~lVDlPGYGy 82 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVD--------------------DELRLVDLPGYGY 82 (200)
T ss_pred CCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEec--------------------CcEEEEeCCCccc
Confidence 34789999999999999999999744 49999999999988877652 2489999999832
Q ss_pred CC-C--cccchhhHHhhhhh---hcceEEEEEecc
Q 014539 134 GA-S--QGEGLGNKFLSHIR---EVDSILQVVRCF 162 (423)
Q Consensus 134 ~~-~--~~~~l~~~~l~~ir---~aD~il~Vvd~~ 162 (423)
-. + ..+.++.....+++ +-.++++++|+.
T Consensus 83 Akv~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r 117 (200)
T COG0218 83 AKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDAR 117 (200)
T ss_pred ccCCHHHHHHHHHHHHHHHhhchhheEEEEEEECC
Confidence 11 1 12233333333333 357788889974
No 149
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.38 E-value=3.9e-12 Score=112.59 Aligned_cols=78 Identities=24% Similarity=0.229 Sum_probs=54.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||+++|.+|||||||+|++++.... ....|.......+.+.+ ..+.+|||||....
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~----~~~~t~~~~~~~~~~~~-----------------~~~~i~D~~G~~~~--- 56 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV----TTIPTIGFNVETVEYKN-----------------VSFTVWDVGGQDKI--- 56 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC----CCCCCcCcceEEEEECC-----------------EEEEEEECCCChhh---
Confidence 6899999999999999999965421 12223333333344332 56999999997533
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+...++.+|++++|+|+++
T Consensus 57 ----~~~~~~~~~~~~~~i~v~D~~~ 78 (158)
T cd00878 57 ----RPLWKHYYENTNGIIFVVDSSD 78 (158)
T ss_pred ----HHHHHHHhccCCEEEEEEECCC
Confidence 2244566789999999999864
No 150
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.38 E-value=2.8e-12 Score=114.94 Aligned_cols=74 Identities=24% Similarity=0.309 Sum_probs=49.5
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.||||||||||+|+|.... + ...+.+.+.. . .+|||||+.....
T Consensus 3 ~i~~iG~~~~GKstl~~~l~~~~~~-----~-----~~~~~v~~~~-----------------~--~~iDtpG~~~~~~- 52 (158)
T PRK15467 3 RIAFVGAVGAGKTTLFNALQGNYTL-----A-----RKTQAVEFND-----------------K--GDIDTPGEYFSHP- 52 (158)
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcc-----C-----ccceEEEECC-----------------C--CcccCCccccCCH-
Confidence 7999999999999999999954311 1 1112222221 1 2699999854322
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.......+++||++++|+|+++
T Consensus 53 --~~~~~~~~~~~~ad~il~v~d~~~ 76 (158)
T PRK15467 53 --RWYHALITTLQDVDMLIYVHGAND 76 (158)
T ss_pred --HHHHHHHHHHhcCCEEEEEEeCCC
Confidence 223344566899999999999864
No 151
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.38 E-value=6.3e-12 Score=112.95 Aligned_cols=79 Identities=16% Similarity=0.264 Sum_probs=52.8
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.+|||||||++++++. .......|... .....+... +.++.+|||||....
T Consensus 1 ~i~ivG~~~vGKTsli~~~~~~-~~~~~~~pt~g--~~~~~i~~~-----------------~~~l~i~Dt~G~~~~--- 57 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSE-RSLESVVPTTG--FNSVAIPTQ-----------------DAIMELLEIGGSQNL--- 57 (164)
T ss_pred CEEEECCCCCCHHHHHHHHhcC-CCcccccccCC--cceEEEeeC-----------------CeEEEEEECCCCcch---
Confidence 4899999999999999999943 32222223222 211112211 256999999997432
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++||++++|+|+++
T Consensus 58 ----~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 58 ----RKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred ----hHHHHHHHhhCCEEEEEEECCC
Confidence 2345577999999999999753
No 152
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.37 E-value=6.6e-12 Score=114.16 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||++++. ..... .++..|+.+.....+.+++. +.++.+|||||..+...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~-~~~f~-~~~~pt~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~~~ 64 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYT-TNKFP-SEYVPTVFDNYAVTVMIGGE---------------PYTLGLFDTAGQEDYDR 64 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHH-cCCCC-CCCCCceeeeeEEEEEECCE---------------EEEEEEEECCCccchhh
Confidence 589999999999999999999 43332 23322332222223334332 25689999999854321
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....++++||++++|+|+++
T Consensus 65 -------~~~~~~~~a~~~ilv~d~~~ 84 (175)
T cd01874 65 -------LRPLSYPQTDVFLVCFSVVS 84 (175)
T ss_pred -------hhhhhcccCCEEEEEEECCC
Confidence 22346789999999999754
No 153
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.37 E-value=6.4e-12 Score=115.30 Aligned_cols=155 Identities=16% Similarity=0.146 Sum_probs=109.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+||.+||.++||||+++-++. ......+.....-+|.-...+.+++.+ ..+++|||+|+.+
T Consensus 10 d~~~kvlliGDs~vGKt~~l~rf~-d~~f~~~~~sTiGIDFk~kti~l~g~~---------------i~lQiWDtaGQer 73 (207)
T KOG0078|consen 10 DYLFKLLLIGDSGVGKTCLLLRFS-DDSFNTSFISTIGIDFKIKTIELDGKK---------------IKLQIWDTAGQER 73 (207)
T ss_pred ceEEEEEEECCCCCchhHhhhhhh-hccCcCCccceEEEEEEEEEEEeCCeE---------------EEEEEEEcccchh
Confidence 445899999999999999999999 555544333334455555566676643 5699999999954
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
+ ...+-+++|.|+.+++|+|..+..+ +++...|+..
T Consensus 74 f-------~ti~~sYyrgA~gi~LvyDitne~S----------------------------feni~~W~~~--------- 109 (207)
T KOG0078|consen 74 F-------RTITTAYYRGAMGILLVYDITNEKS----------------------------FENIRNWIKN--------- 109 (207)
T ss_pred H-------HHHHHHHHhhcCeeEEEEEccchHH----------------------------HHHHHHHHHH---------
Confidence 3 4578899999999999999754322 1111112211
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
|.++.+ ..-|+++|.||.| +... +....++-++++.+.|..|
T Consensus 110 -----------I~e~a~------------------------~~v~~~LvGNK~D--~~~~-R~V~~e~ge~lA~e~G~~F 151 (207)
T KOG0078|consen 110 -----------IDEHAS------------------------DDVVKILVGNKCD--LEEK-RQVSKERGEALAREYGIKF 151 (207)
T ss_pred -----------HHhhCC------------------------CCCcEEEeecccc--cccc-ccccHHHHHHHHHHhCCeE
Confidence 111111 2558899999995 4443 4556788889999999999
Q ss_pred EEechhhhHhhcC
Q 014539 294 VTISAQVEAELTE 306 (423)
Q Consensus 294 v~~Sa~~e~~i~~ 306 (423)
+.+||+.+.+|.+
T Consensus 152 ~EtSAk~~~NI~e 164 (207)
T KOG0078|consen 152 FETSAKTNFNIEE 164 (207)
T ss_pred EEccccCCCCHHH
Confidence 9999999988843
No 154
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.37 E-value=5.9e-12 Score=112.48 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=52.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|++.. ......|. +.+........++.. ..+.+|||||......
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~-~~~~~~~~-~~~~~~~~~~~~~~~---------------~~l~~~D~~g~~~~~~ 63 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGK-FPTEYVPT-VFDNYSATVTVDGKQ---------------VNLGLWDTAGQEEYDR 63 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-CCCCCCCc-eeeeeEEEEEECCEE---------------EEEEEEeCCCcccccc
Confidence 589999999999999999999543 22222222 222222223333322 4589999999864321
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++.||++++|+|++
T Consensus 64 -------~~~~~~~~~~~~i~v~d~~ 82 (171)
T cd00157 64 -------LRPLSYPNTDVFLICFSVD 82 (171)
T ss_pred -------cchhhcCCCCEEEEEEECC
Confidence 1122347899999999975
No 155
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.36 E-value=2.9e-12 Score=115.75 Aligned_cols=87 Identities=16% Similarity=0.135 Sum_probs=54.1
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceec-----C---------CCCccccceEEEEecCCccchhhccccccccccCceE
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA-----N---------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASV 123 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs-----~---------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i 123 (423)
.|+++|.+|||||||+|+|++...+... . ..++|..+....+.+.. ......++
T Consensus 2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~------------~~~~~~~~ 69 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKA------------KDGQEYLL 69 (179)
T ss_pred cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEec------------CCCCcEEE
Confidence 5899999999999999999953321100 0 11233332222222100 00012568
Q ss_pred EEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.||||||+.+. .......++.||++++|+|+++
T Consensus 70 ~l~Dt~G~~~~-------~~~~~~~~~~ad~~i~v~D~~~ 102 (179)
T cd01890 70 NLIDTPGHVDF-------SYEVSRSLAACEGALLLVDATQ 102 (179)
T ss_pred EEEECCCChhh-------HHHHHHHHHhcCeEEEEEECCC
Confidence 89999999543 2345667899999999999853
No 156
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.36 E-value=1.4e-12 Score=132.34 Aligned_cols=88 Identities=24% Similarity=0.288 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..++.|+|+||||||||+|.+| .....+.+|||||..-..|-+.+.- -.++++||||+....
T Consensus 168 trTlllcG~PNVGKSSf~~~vt-radvevqpYaFTTksL~vGH~dykY-----------------lrwQViDTPGILD~p 229 (620)
T KOG1490|consen 168 TRTLLVCGYPNVGKSSFNNKVT-RADDEVQPYAFTTKLLLVGHLDYKY-----------------LRWQVIDTPGILDRP 229 (620)
T ss_pred cCeEEEecCCCCCcHhhccccc-ccccccCCcccccchhhhhhhhhhe-----------------eeeeecCCccccCcc
Confidence 4689999999999999999999 8888999999999988888776544 448999999996533
Q ss_pred Cc----ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQ----GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~----~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
-+ .+...-.+++|+|.| +|++.|.|+
T Consensus 230 lEdrN~IEmqsITALAHLraa--VLYfmDLSe 259 (620)
T KOG1490|consen 230 EEDRNIIEMQIITALAHLRSA--VLYFMDLSE 259 (620)
T ss_pred hhhhhHHHHHHHHHHHHhhhh--heeeeechh
Confidence 22 112223457888877 999999764
No 157
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.35 E-value=8.1e-12 Score=114.00 Aligned_cols=84 Identities=18% Similarity=0.139 Sum_probs=53.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|++.++ ... ..+..|+.......+..++.. ...+.+|||||....
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~-~~~-~~~~~t~~~~~~~~i~~~~~~--------------~~~l~i~Dt~G~~~~-- 62 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQG-KFP-EEYVPTVFENYVTNIQGPNGK--------------IIELALWDTAGQEEY-- 62 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhC-cCC-CCCCCeeeeeeEEEEEecCCc--------------EEEEEEEECCCchhH--
Confidence 48999999999999999999943 332 222223222222233333111 146899999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+++||++++|+|+++
T Consensus 63 -----~~~~~~~~~~ad~ii~v~d~~~ 84 (187)
T cd04132 63 -----DRLRPLSYPDVDVLLICYAVDN 84 (187)
T ss_pred -----HHHHHHhCCCCCEEEEEEECCC
Confidence 1223345789999999999753
No 158
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=2.7e-12 Score=116.06 Aligned_cols=154 Identities=19% Similarity=0.188 Sum_probs=107.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||.++|..+||||||++++. .....-...+...+|.....+.+.|.. ..++||||+|+.+..+
T Consensus 23 ~KlVflGdqsVGKTslItRf~-yd~fd~~YqATIGiDFlskt~~l~d~~---------------vrLQlWDTAGQERFrs 86 (221)
T KOG0094|consen 23 YKLVFLGDQSVGKTSLITRFM-YDKFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERFRS 86 (221)
T ss_pred EEEEEEccCccchHHHHHHHH-HhhhcccccceeeeEEEEEEEEEcCcE---------------EEEEEEecccHHHHhh
Confidence 799999999999999999999 777666666777777777777776633 5699999999976655
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
...+++|+++++++|.|..+..... .--.|+.....
T Consensus 87 -------lipsY~Rds~vaviVyDit~~~Sfe----------------------------~t~kWi~dv~~--------- 122 (221)
T KOG0094|consen 87 -------LIPSYIRDSSVAVIVYDITDRNSFE----------------------------NTSKWIEDVRR--------- 122 (221)
T ss_pred -------hhhhhccCCeEEEEEEeccccchHH----------------------------HHHHHHHHHHh---------
Confidence 6789999999999999976432211 11111111100
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
+.+ ...--+++|.||. |+.+. ..-..++-+..+++.+..|+.+
T Consensus 123 -------------e~g---------------------s~~viI~LVGnKt--DL~dk-rqvs~eEg~~kAkel~a~f~et 165 (221)
T KOG0094|consen 123 -------------ERG---------------------SDDVIIFLVGNKT--DLSDK-RQVSIEEGERKAKELNAEFIET 165 (221)
T ss_pred -------------ccC---------------------CCceEEEEEcccc--cccch-hhhhHHHHHHHHHHhCcEEEEe
Confidence 001 0123456678998 56554 3445566666778889999999
Q ss_pred chhhhHhhcCC
Q 014539 297 SAQVEAELTEL 307 (423)
Q Consensus 297 Sa~~e~~i~~l 307 (423)
||+.+.++.+|
T Consensus 166 sak~g~NVk~l 176 (221)
T KOG0094|consen 166 SAKAGENVKQL 176 (221)
T ss_pred cccCCCCHHHH
Confidence 99999888543
No 159
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.35 E-value=3e-11 Score=110.51 Aligned_cols=80 Identities=24% Similarity=0.315 Sum_probs=55.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|.++|.+|||||||+++++.+.. ....| |...+...+...+ ..+.+|||||..+
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~--~~~~p--t~g~~~~~~~~~~-----------------~~~~i~D~~Gq~~-- 73 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK-- 73 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCC--ccccC--CcceeEEEEEECC-----------------EEEEEEECCCCHH--
Confidence 47999999999999999999983322 12222 3233333333322 5699999999732
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+...+++||++++|+|+++
T Consensus 74 -----~~~~~~~~~~~a~~iI~V~D~s~ 96 (181)
T PLN00223 74 -----IRPLWRHYFQNTQGLIFVVDSND 96 (181)
T ss_pred -----HHHHHHHHhccCCEEEEEEeCCc
Confidence 22345567899999999999864
No 160
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.35 E-value=7.9e-12 Score=108.38 Aligned_cols=87 Identities=24% Similarity=0.265 Sum_probs=68.5
Q ss_pred EEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCcccc
Q 014539 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 140 (423)
++|.+|+|||||+|+|++......++.+++|..+........+ ...+.+|||||+.........
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~Dt~g~~~~~~~~~~ 64 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP----------------LGPVVLIDTPGIDEAGGLGRE 64 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEecC----------------CCcEEEEECCCCCccccchhh
Confidence 5899999999999999966666678888899888877765542 135999999999766554443
Q ss_pred hhhHHhhhhhhcceEEEEEeccC
Q 014539 141 LGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 141 l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+...++.+|++++|+|+..
T Consensus 65 ~~~~~~~~~~~~d~il~v~~~~~ 87 (163)
T cd00880 65 REELARRVLERADLILFVVDADL 87 (163)
T ss_pred HHHHHHHHHHhCCEEEEEEeCCC
Confidence 34566778899999999999864
No 161
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=7.7e-12 Score=118.04 Aligned_cols=86 Identities=15% Similarity=-0.017 Sum_probs=54.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..+||++||.+|||||||+++++.+ .......|....+.....+...+. ...+.+|||||....
T Consensus 12 ~~~Ki~vvG~~gvGKTsli~~~~~~-~f~~~~~~tig~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 75 (219)
T PLN03071 12 PSFKLVIVGDGGTGKTTFVKRHLTG-EFEKKYEPTIGVEVHPLDFFTNCG---------------KIRFYCWDTAGQEKF 75 (219)
T ss_pred CceEEEEECcCCCCHHHHHHHHhhC-CCCCccCCccceeEEEEEEEECCe---------------EEEEEEEECCCchhh
Confidence 3479999999999999999998733 222211222111222222222221 146899999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. ....+++.+|++|+|+|+++
T Consensus 76 ~~-------~~~~~~~~~~~~ilvfD~~~ 97 (219)
T PLN03071 76 GG-------LRDGYYIHGQCAIIMFDVTA 97 (219)
T ss_pred hh-------hhHHHcccccEEEEEEeCCC
Confidence 22 23346789999999999753
No 162
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.34 E-value=8.9e-12 Score=112.03 Aligned_cols=80 Identities=21% Similarity=0.161 Sum_probs=51.1
Q ss_pred EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCcc
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (423)
|+++|.+|||||||+|++.++. ......| ++.+.....+.+++. ...+.+|||||......
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~-- 61 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNA-FPEDYVP-TVFENYSADVEVDGK---------------PVELGLWDTAGQEDYDR-- 61 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCC-CCCCCCC-cEEeeeeEEEEECCE---------------EEEEEEEECCCCcccch--
Confidence 5899999999999999999433 3222222 222222222333332 14589999999854332
Q ss_pred cchhhHHhhhhhhcceEEEEEecc
Q 014539 139 EGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 139 ~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++.+|++++|+|++
T Consensus 62 -----~~~~~~~~~d~~ilv~d~~ 80 (174)
T smart00174 62 -----LRPLSYPDTDVFLICFSVD 80 (174)
T ss_pred -----hchhhcCCCCEEEEEEECC
Confidence 2223567899999999975
No 163
>PRK09866 hypothetical protein; Provisional
Probab=99.34 E-value=9.9e-12 Score=130.86 Aligned_cols=36 Identities=33% Similarity=0.425 Sum_probs=33.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI 92 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~ 92 (423)
+.++++|.+|+|||||+|+|+|.....+++.|+||.
T Consensus 70 ~~valvG~sgaGKSTLiNaL~G~~Vlpt~~~~~t~l 105 (741)
T PRK09866 70 MVLAIVGTMKAGKSTTINAIVGTEVLPNRNRPMTAL 105 (741)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCccccCCCcccccc
Confidence 899999999999999999999888888878898887
No 164
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.34 E-value=4.5e-11 Score=109.42 Aligned_cols=80 Identities=24% Similarity=0.312 Sum_probs=55.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..||+++|.+|||||||++++..+... ...| |...+...+...+ ..+.+|||||...
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~--~~~~--T~~~~~~~~~~~~-----------------~~~~l~D~~G~~~-- 73 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKN-----------------LKFTMWDVGGQDK-- 73 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc--ccCC--ccccceEEEEECC-----------------EEEEEEECCCCHh--
Confidence 479999999999999999999733221 2223 3333333333322 5699999999732
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
........+++||++++|+|+++
T Consensus 74 -----~~~~~~~~~~~ad~iI~v~D~t~ 96 (182)
T PTZ00133 74 -----LRPLWRHYYQNTNGLIFVVDSND 96 (182)
T ss_pred -----HHHHHHHHhcCCCEEEEEEeCCC
Confidence 22345567899999999999753
No 165
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.34 E-value=6.8e-12 Score=129.84 Aligned_cols=84 Identities=19% Similarity=0.154 Sum_probs=63.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceec------------------------------CCCCccccceEEEEecCCcc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPDPR 105 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs------------------------------~~p~tT~~~~~~~~~~~~~r 105 (423)
.+.|+++|.+|+|||||+|+|+....+... ..+++|++.....+...+
T Consensus 6 ~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~-- 83 (425)
T PRK12317 6 HLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDK-- 83 (425)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCC--
Confidence 478999999999999999999954332211 157889888887776654
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||..+. .......++.||++++|+|+.+
T Consensus 84 ---------------~~i~liDtpG~~~~-------~~~~~~~~~~aD~~ilVvDa~~ 119 (425)
T PRK12317 84 ---------------YYFTIVDCPGHRDF-------VKNMITGASQADAAVLVVAADD 119 (425)
T ss_pred ---------------eEEEEEECCCcccc-------hhhHhhchhcCCEEEEEEEccc
Confidence 56999999997322 2234455789999999999853
No 166
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.33 E-value=6.6e-12 Score=112.57 Aligned_cols=159 Identities=18% Similarity=0.170 Sum_probs=101.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+||.|.|.+|||||||+|.++ .....--.+.....+....-+.+++.. ..+++|||+|..+
T Consensus 7 ~~lLKViiLGDsGVGKtSLmn~yv-~~kF~~qykaTIgadFltKev~Vd~~~---------------vtlQiWDTAGQER 70 (210)
T KOG0394|consen 7 RTLLKVIILGDSGVGKTSLMNQYV-NKKFSQQYKATIGADFLTKEVQVDDRS---------------VTLQIWDTAGQER 70 (210)
T ss_pred ccceEEEEeCCCCccHHHHHHHHH-HHHHHHHhccccchhheeeEEEEcCeE---------------EEEEEEecccHHH
Confidence 445899999999999999999999 444332223333333444445555432 5699999999977
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
..+.+ ...+|.||.+++|.|+.... .++.+++ |- -++
T Consensus 71 FqsLg-------~aFYRgaDcCvlvydv~~~~-------------Sfe~L~~----Wr-------~EF------------ 107 (210)
T KOG0394|consen 71 FQSLG-------VAFYRGADCCVLVYDVNNPK-------------SFENLEN----WR-------KEF------------ 107 (210)
T ss_pred hhhcc-------cceecCCceEEEEeecCChh-------------hhccHHH----HH-------HHH------------
Confidence 65533 34579999999999964321 1111110 00 000
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCC-CCcchHHHHHHHhhc-CC
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPG-SNPHVNEVMNLASDL-QS 291 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~-~~~~~~~i~~~~~~~-~~ 291 (423)
|.+..+-. -...|.+++.||.+ +..+. .....++.++||..+ ++
T Consensus 108 ---------------l~qa~~~~-----------------Pe~FPFVilGNKiD--~~~~~~r~VS~~~Aq~WC~s~gni 153 (210)
T KOG0394|consen 108 ---------------LIQASPQD-----------------PETFPFVILGNKID--VDGGKSRQVSEKKAQTWCKSKGNI 153 (210)
T ss_pred ---------------HHhcCCCC-----------------CCcccEEEEccccc--CCCCccceeeHHHHHHHHHhcCCc
Confidence 11111101 15789999999995 43321 345678899999876 58
Q ss_pred cEEEechhhhHhhc
Q 014539 292 GRVTISAQVEAELT 305 (423)
Q Consensus 292 ~~v~~Sa~~e~~i~ 305 (423)
+++.+|||...++.
T Consensus 154 pyfEtSAK~~~NV~ 167 (210)
T KOG0394|consen 154 PYFETSAKEATNVD 167 (210)
T ss_pred eeEEecccccccHH
Confidence 99999999877763
No 167
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.33 E-value=1.6e-11 Score=110.85 Aligned_cols=83 Identities=19% Similarity=0.203 Sum_probs=56.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|+|||||++++.++ .. ..+++.|+.+.....+.+++. ...+.+|||||..+...
T Consensus 1 ~k~~i~G~~~~GKtsl~~~~~~~-~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~~ 63 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTN-GY-PTEYVPTAFDNFSVVVLVDGK---------------PVRLQLCDTAGQDEFDK 63 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhC-CC-CCCCCCceeeeeeEEEEECCE---------------EEEEEEEECCCChhhcc
Confidence 48999999999999999999843 32 334554544443334444431 14588999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.+|++++|+|+++
T Consensus 64 -------~~~~~~~~a~~~i~v~d~~~ 83 (173)
T cd04130 64 -------LRPLCYPDTDVFLLCFSVVN 83 (173)
T ss_pred -------ccccccCCCcEEEEEEECCC
Confidence 12235689999999999753
No 168
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.32 E-value=2.5e-11 Score=106.04 Aligned_cols=78 Identities=24% Similarity=0.312 Sum_probs=53.4
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
.|+++|.+|||||||+|+|++.. ......|.. ..+...+..+. ..+.+|||||....
T Consensus 1 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~t~--~~~~~~~~~~~-----------------~~~~~~D~~g~~~~--- 57 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQ-FSEDTIPTV--GFNMRKVTKGN-----------------VTLKVWDLGGQPRF--- 57 (159)
T ss_pred CEEEEcCCCCCHHHHHHHHccCC-CCcCccCCC--CcceEEEEECC-----------------EEEEEEECCCCHhH---
Confidence 48999999999999999999543 333333322 23333333322 46999999997322
Q ss_pred ccchhhHHhhhhhhcceEEEEEecc
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++.+|++++|+|++
T Consensus 58 ----~~~~~~~~~~~d~ii~v~d~~ 78 (159)
T cd04159 58 ----RSMWERYCRGVNAIVYVVDAA 78 (159)
T ss_pred ----HHHHHHHHhcCCEEEEEEECC
Confidence 223456688999999999975
No 169
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.32 E-value=2.5e-11 Score=109.17 Aligned_cols=82 Identities=17% Similarity=0.127 Sum_probs=54.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|+|||||+|+++++. . ...+..++.+.....+.+++.. ..+.+|||||......
T Consensus 1 ~ki~i~G~~~~GKTsl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 63 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDA-F-PEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYDR 63 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCC-C-CCCCCCceeeeeEEEEEECCEE---------------EEEEEEeCCCcccccc
Confidence 489999999999999999999443 2 2223333333333334444422 3478999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. ....++.+|++++|+|+.
T Consensus 64 ~-------~~~~~~~~~~~ilv~~~~ 82 (174)
T cd04135 64 L-------RPLSYPMTDVFLICFSVV 82 (174)
T ss_pred c-------ccccCCCCCEEEEEEECC
Confidence 1 123467899999999975
No 170
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.32 E-value=1.1e-11 Score=113.10 Aligned_cols=83 Identities=13% Similarity=0.132 Sum_probs=54.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||++++.++ .... .+..|..+.....+.+++.. ..+.+|||||......
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~-~f~~-~~~~t~~~~~~~~~~~~~~~---------------~~l~iwDt~G~~~~~~ 64 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKD-CYPE-TYVPTVFENYTASFEIDEQR---------------IELSLWDTSGSPYYDN 64 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC-cCCC-CcCCceEEEEEEEEEECCEE---------------EEEEEEECCCchhhhh
Confidence 68999999999999999999943 3322 22222111112223444422 4589999999744322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+++||++++|+|.++
T Consensus 65 -------~~~~~~~~a~~~ilvfdit~ 84 (178)
T cd04131 65 -------VRPLCYPDSDAVLICFDISR 84 (178)
T ss_pred -------cchhhcCCCCEEEEEEECCC
Confidence 22346789999999999754
No 171
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.32 E-value=2e-11 Score=108.38 Aligned_cols=150 Identities=23% Similarity=0.285 Sum_probs=94.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||.++|.++||||||++++.++ .......|....+.....+.+.+.. ..+.+||++|....
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~D~~g~~~~--- 61 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLING-EFPENYIPTIGIDSYSKEVSIDGKP---------------VNLEIWDTSGQERF--- 61 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS-STTSSSETTSSEEEEEEEEEETTEE---------------EEEEEEEETTSGGG---
T ss_pred CEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccccccccc---------------cccccccccccccc---
Confidence 7999999999999999999954 3332222322244444555555432 56999999996322
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhHH
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKDA 217 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~~ 217 (423)
.......++++|++++|+|..+..+ + +...
T Consensus 62 ----~~~~~~~~~~~~~~ii~fd~~~~~S----------------~------------~~~~------------------ 91 (162)
T PF00071_consen 62 ----DSLRDIFYRNSDAIIIVFDVTDEES----------------F------------ENLK------------------ 91 (162)
T ss_dssp ----HHHHHHHHTTESEEEEEEETTBHHH----------------H------------HTHH------------------
T ss_pred ----ccccccccccccccccccccccccc----------------c------------cccc------------------
Confidence 2223355889999999999643211 1 1100
Q ss_pred HHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEec
Q 014539 218 EKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTIS 297 (423)
Q Consensus 218 ~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~S 297 (423)
..+..+.... ....|+++++|+.| ..+. .....++.++++++.+.+++.+|
T Consensus 92 --~~~~~i~~~~------------------------~~~~~iivvg~K~D--~~~~-~~v~~~~~~~~~~~~~~~~~e~S 142 (162)
T PF00071_consen 92 --KWLEEIQKYK------------------------PEDIPIIVVGNKSD--LSDE-REVSVEEAQEFAKELGVPYFEVS 142 (162)
T ss_dssp --HHHHHHHHHS------------------------TTTSEEEEEEETTT--GGGG-SSSCHHHHHHHHHHTTSEEEEEB
T ss_pred --cccccccccc------------------------cccccceeeecccc--cccc-ccchhhHHHHHHHHhCCEEEEEE
Confidence 1111111100 12469999999995 3332 23456778889988889999999
Q ss_pred hhhhHhhc
Q 014539 298 AQVEAELT 305 (423)
Q Consensus 298 a~~e~~i~ 305 (423)
|+.+.++.
T Consensus 143 a~~~~~v~ 150 (162)
T PF00071_consen 143 AKNGENVK 150 (162)
T ss_dssp TTTTTTHH
T ss_pred CCCCCCHH
Confidence 99876663
No 172
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.30 E-value=1.1e-11 Score=107.55 Aligned_cols=82 Identities=28% Similarity=0.254 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||+|||||+|+|++.. ...+..|++|.+.....+..++.. ..+.+|||||......
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~~ 65 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK-FITEYKPGTTRNYVTTVIEEDGKT---------------YKFNLLDTAGQEDYRA 65 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC-CcCcCCCCceeeeeEEEEEECCEE---------------EEEEEEECCCcccchH
Confidence 689999999999999999999555 777888899988877766655421 3589999999643322
Q ss_pred cccchhhHHhhhhhhcceEEEEEec
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~ 161 (423)
......++++.++.++|.
T Consensus 66 -------~~~~~~~~~~~~i~~~d~ 83 (161)
T TIGR00231 66 -------IRRLYYRAVESSLRVFDI 83 (161)
T ss_pred -------HHHHHHhhhhEEEEEEEE
Confidence 223445678888888885
No 173
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.30 E-value=1.9e-11 Score=110.00 Aligned_cols=78 Identities=21% Similarity=0.184 Sum_probs=55.0
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.+|||||||+|+|++... .....|...+...+...+ ..+.+|||||..+
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~----~~~~~t~g~~~~~~~~~~-----------------~~~~i~D~~G~~~---- 55 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP----KKVAPTVGFTPTKLRLDK-----------------YEVCIFDLGGGAN---- 55 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC----ccccCcccceEEEEEECC-----------------EEEEEEECCCcHH----
Confidence 489999999999999999995411 122334334434444433 5689999999732
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+..++++||++++|+|+++
T Consensus 56 ---~~~~~~~~~~~a~~ii~V~D~s~ 78 (167)
T cd04161 56 ---FRGIWVNYYAEAHGLVFVVDSSD 78 (167)
T ss_pred ---HHHHHHHHHcCCCEEEEEEECCc
Confidence 23345678899999999999864
No 174
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.30 E-value=2.4e-11 Score=110.93 Aligned_cols=83 Identities=17% Similarity=0.156 Sum_probs=55.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.++||||||+++++ .........| |.-+.....+.+++.. ..+.+|||+|..+...
T Consensus 2 ~kivv~G~~~vGKTsli~~~~-~~~f~~~~~~-Ti~~~~~~~~~~~~~~---------------v~l~i~Dt~G~~~~~~ 64 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYT-SNKFPTDYIP-TVFDNFSANVSVDGNT---------------VNLGLWDTAGQEDYNR 64 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHh-cCCCCCCCCC-cceeeeEEEEEECCEE---------------EEEEEEECCCCccccc
Confidence 589999999999999999999 4444322223 2212222223333322 4689999999855433
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....++++||++++|+|+++
T Consensus 65 -------~~~~~~~~a~~~ilvyd~~~ 84 (176)
T cd04133 65 -------LRPLSYRGADVFVLAFSLIS 84 (176)
T ss_pred -------cchhhcCCCcEEEEEEEcCC
Confidence 23446899999999999754
No 175
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.30 E-value=7.9e-11 Score=106.90 Aligned_cols=80 Identities=24% Similarity=0.287 Sum_probs=54.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.+|||||||++++..+. . ....| |.......+.... ..+.+|||||....
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~-~-~~~~~--t~~~~~~~~~~~~-----------------~~l~l~D~~G~~~~- 70 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGE-S-VTTIP--TIGFNVETVTYKN-----------------ISFTVWDVGGQDKI- 70 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCC-C-CCcCC--ccccceEEEEECC-----------------EEEEEEECCCChhh-
Confidence 4899999999999999999997232 2 12223 2222222232222 56999999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+++||++++|+|+++
T Consensus 71 ------~~~~~~~~~~ad~ii~v~D~t~ 92 (175)
T smart00177 71 ------RPLWRHYYTNTQGLIFVVDSND 92 (175)
T ss_pred ------HHHHHHHhCCCCEEEEEEECCC
Confidence 2234556899999999999763
No 176
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.30 E-value=2.4e-11 Score=110.37 Aligned_cols=83 Identities=16% Similarity=0.119 Sum_probs=53.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+.++.. .... ..+..|+.+.....+.+.+.. .++.+|||||......
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~-~~f~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTT-NAFP-GEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYDR 64 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhc-CCCC-CcCCCcceeeeEEEEEECCEE---------------EEEEEEECCCchhhhh
Confidence 6899999999999999999994 3322 222222222212223333211 4689999999743321
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++++|++++|+|+++
T Consensus 65 -------~~~~~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 65 -------LRPLSYPQTDVFLICFSLVS 84 (174)
T ss_pred -------hhhhhcCCCCEEEEEEECCC
Confidence 22345789999999999753
No 177
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.30 E-value=2.3e-11 Score=111.61 Aligned_cols=84 Identities=14% Similarity=0.140 Sum_probs=55.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.++||||||++++.+ .... ..+..|..+.....+.+++.. ..+.+|||+|.....
T Consensus 5 ~~KivvvGd~~vGKTsli~~~~~-~~f~-~~~~pT~~~~~~~~~~~~~~~---------------~~l~iwDtaG~e~~~ 67 (182)
T cd04172 5 KCKIVVVGDSQCGKTALLHVFAK-DCFP-ENYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYYD 67 (182)
T ss_pred eEEEEEECCCCCCHHHHHHHHHh-CCCC-CccCCceeeeeEEEEEECCEE---------------EEEEEEECCCchhhH
Confidence 47999999999999999999994 3322 222222222222223444322 459999999984332
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ....++++||++++|+|+++
T Consensus 68 ~-------~~~~~~~~ad~~ilvyDit~ 88 (182)
T cd04172 68 N-------VRPLSYPDSDAVLICFDISR 88 (182)
T ss_pred h-------hhhhhcCCCCEEEEEEECCC
Confidence 2 23456899999999999753
No 178
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.29 E-value=3.1e-11 Score=115.04 Aligned_cols=85 Identities=15% Similarity=0.148 Sum_probs=56.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+.+||++||.++||||||++++++ ........|... ......+.+.+.. ..+.||||||....
T Consensus 12 ~~~KIvvvGd~~VGKTsLi~r~~~-~~F~~~y~pTi~-~~~~~~i~~~~~~---------------v~l~iwDTaG~e~~ 74 (232)
T cd04174 12 MRCKLVLVGDVQCGKTAMLQVLAK-DCYPETYVPTVF-ENYTAGLETEEQR---------------VELSLWDTSGSPYY 74 (232)
T ss_pred eeEEEEEECCCCCcHHHHHHHHhc-CCCCCCcCCcee-eeeEEEEEECCEE---------------EEEEEEeCCCchhh
Confidence 457999999999999999999994 333222222221 1111223344322 46999999997432
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++||++++|+|+++
T Consensus 75 ~-------~~~~~~~~~ad~vIlVyDit~ 96 (232)
T cd04174 75 D-------NVRPLCYSDSDAVLLCFDISR 96 (232)
T ss_pred H-------HHHHHHcCCCcEEEEEEECCC
Confidence 2 234457899999999999754
No 179
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.28 E-value=3.9e-11 Score=111.40 Aligned_cols=82 Identities=18% Similarity=0.171 Sum_probs=57.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCc------ce---------ecCCCCccccceEEEEecCCccchhhccccccccccCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGK------AQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~------~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
+.|+++|.+|+|||||+++|++... .. .....++|++.....+... ..
T Consensus 3 ~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~-----------------~~ 65 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETA-----------------NR 65 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCC-----------------Ce
Confidence 6799999999999999999985311 00 0113455555543333322 25
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
++.|+||||.. .+.......++.+|++++|+|+.
T Consensus 66 ~i~~iDtPG~~-------~~~~~~~~~~~~~D~~ilVvda~ 99 (195)
T cd01884 66 HYAHVDCPGHA-------DYIKNMITGAAQMDGAILVVSAT 99 (195)
T ss_pred EEEEEECcCHH-------HHHHHHHHHhhhCCEEEEEEECC
Confidence 79999999983 34456677889999999999975
No 180
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.28 E-value=4.2e-11 Score=107.38 Aligned_cols=81 Identities=21% Similarity=0.207 Sum_probs=52.9
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||+++|.+|||||||+|+|+++... ..+|.++ ....-...+.+. ..++.+|||||.....
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~--~~~~~~~-~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~-- 61 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFP--ENVPRVL-PEITIPADVTPE---------------RVPTTIVDTSSRPQDR-- 61 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCC--ccCCCcc-cceEeeeeecCC---------------eEEEEEEeCCCchhhh--
Confidence 8999999999999999999954322 2244322 221111222221 2468999999974321
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+...++.+|++++|+|+++
T Consensus 62 -----~~~~~~~~~ad~~ilv~d~~~ 82 (166)
T cd01893 62 -----ANLAAEIRKANVICLVYSVDR 82 (166)
T ss_pred -----HHHhhhcccCCEEEEEEECCC
Confidence 234556789999999999753
No 181
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=1.1e-10 Score=105.00 Aligned_cols=153 Identities=20% Similarity=0.130 Sum_probs=102.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+|+.++|..+||||+||-+++ .+....-.-....++.-...+.+.+.. .++++|||+|....
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~-~krF~~~hd~TiGvefg~r~~~id~k~---------------IKlqiwDtaGqe~f- 68 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFT-DKRFQPVHDLTIGVEFGARMVTIDGKQ---------------IKLQIWDTAGQESF- 68 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHh-ccCccccccceeeeeeceeEEEEcCce---------------EEEEEEecCCcHHH-
Confidence 3799999999999999999999 554432222222233333345665533 56999999998433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
..-.-+++|.|-..|+|.|....+...|
T Consensus 69 ------rsv~~syYr~a~GalLVydit~r~sF~h---------------------------------------------- 96 (216)
T KOG0098|consen 69 ------RSVTRSYYRGAAGALLVYDITRRESFNH---------------------------------------------- 96 (216)
T ss_pred ------HHHHHHHhccCcceEEEEEccchhhHHH----------------------------------------------
Confidence 3356788999999999999754322111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+..-|+.++++. ..+--++++.||+ |+... +....++-+.|++++|..++.
T Consensus 97 --L~~wL~D~rq~~------------------------~~NmvImLiGNKs--DL~~r-R~Vs~EEGeaFA~ehgLifmE 147 (216)
T KOG0098|consen 97 --LTSWLEDARQHS------------------------NENMVIMLIGNKS--DLEAR-REVSKEEGEAFAREHGLIFME 147 (216)
T ss_pred --HHHHHHHHHHhc------------------------CCCcEEEEEcchh--hhhcc-ccccHHHHHHHHHHcCceeeh
Confidence 111111121111 1455678889999 45443 455678899999999999999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||++++++.+
T Consensus 148 TSakt~~~VEE 158 (216)
T KOG0098|consen 148 TSAKTAENVEE 158 (216)
T ss_pred hhhhhhhhHHH
Confidence 99999988844
No 182
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.26 E-value=1e-10 Score=105.10 Aligned_cols=80 Identities=20% Similarity=0.243 Sum_probs=54.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++...... ..|...+...+...+ ..+.+|||||...
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~----~~t~g~~~~~i~~~~-----------------~~~~~~D~~G~~~- 70 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI----TPTQGFNIKTVQSDG-----------------FKLNVWDIGGQRA- 70 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc----CCCCCcceEEEEECC-----------------EEEEEEECCCCHH-
Confidence 358999999999999999999996432211 112222222333333 4689999999732
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+...+...++.||++++|+|++
T Consensus 71 ------~~~~~~~~~~~~~~ii~v~D~~ 92 (173)
T cd04155 71 ------IRPYWRNYFENTDCLIYVIDSA 92 (173)
T ss_pred ------HHHHHHHHhcCCCEEEEEEeCC
Confidence 2234456678999999999975
No 183
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.25 E-value=1.7e-10 Score=112.34 Aligned_cols=82 Identities=17% Similarity=0.204 Sum_probs=58.2
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcc-----eec------------CCCCccccceEEEEecCCccchhhccccccccccC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKA-----QAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~-----~vs------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
.|+++|.+|+|||||+|+|...... .++ ...++|++.....+...+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~----------------- 63 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKD----------------- 63 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECC-----------------
Confidence 3899999999999999999731111 111 123555555555555544
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||... +.......++.+|++++|+|+.+
T Consensus 64 ~~i~liDTPG~~d-------f~~~~~~~l~~aD~ailVVDa~~ 99 (270)
T cd01886 64 HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVA 99 (270)
T ss_pred EEEEEEECCCcHH-------HHHHHHHHHHHcCEEEEEEECCC
Confidence 6799999999743 33456788999999999999853
No 184
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.25 E-value=1.1e-11 Score=112.89 Aligned_cols=58 Identities=29% Similarity=0.457 Sum_probs=49.3
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
...++|+++|.||||||||+|+|+|...+.+++.|++|++.+.... . .++.++||||+
T Consensus 115 ~~~~~~~~vG~pnvGKSslin~l~~~~~~~~~~~pg~T~~~~~~~~--~------------------~~~~l~DtPGi 172 (172)
T cd04178 115 KTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVHL--D------------------KKVKLLDSPGI 172 (172)
T ss_pred ccCcEEEEEcCCCCCHHHHHHHHhCcccceecCCCCeEcceEEEEe--C------------------CCEEEEECcCC
Confidence 3458999999999999999999998888899999999987655443 1 35999999996
No 185
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.25 E-value=5.8e-11 Score=109.47 Aligned_cols=83 Identities=16% Similarity=0.137 Sum_probs=53.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.++||||||++++.. ........|.. -+.....+.+++.. ..+.+|||||..+...
T Consensus 4 ~ki~~vG~~~vGKTsli~~~~~-~~f~~~~~~t~-~~~~~~~~~~~~~~---------------~~l~i~Dt~G~e~~~~ 66 (191)
T cd01875 4 IKCVVVGDGAVGKTCLLICYTT-NAFPKEYIPTV-FDNYSAQTAVDGRT---------------VSLNLWDTAGQEEYDR 66 (191)
T ss_pred EEEEEECCCCCCHHHHHHHHHh-CCCCcCCCCce-EeeeEEEEEECCEE---------------EEEEEEECCCchhhhh
Confidence 7999999999999999999994 33221111211 11111122333322 4589999999854332
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....++++||++++|+|+++
T Consensus 67 -------l~~~~~~~a~~~ilvydit~ 86 (191)
T cd01875 67 -------LRTLSYPQTNVFIICFSIAS 86 (191)
T ss_pred -------hhhhhccCCCEEEEEEECCC
Confidence 33456789999999999753
No 186
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.1e-11 Score=108.67 Aligned_cols=154 Identities=15% Similarity=0.075 Sum_probs=108.3
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....+||+++|.|+||||-|+.+++ .........+...++.....+.+++.. ...++|||+|+.
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRft-rnEF~~~SksTIGvef~t~t~~vd~k~---------------vkaqIWDTAGQE 74 (222)
T KOG0087|consen 11 YDYLFKIVLIGDSAVGKSNLLSRFT-RNEFSLESKSTIGVEFATRTVNVDGKT---------------VKAQIWDTAGQE 74 (222)
T ss_pred cceEEEEEEeCCCccchhHHHHHhc-ccccCcccccceeEEEEeeceeecCcE---------------EEEeeecccchh
Confidence 3456899999999999999999999 666666666666666666667776643 458999999997
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
+... -.-++.|.|-+.++|.|.+...
T Consensus 75 RyrA-------itSaYYrgAvGAllVYDITr~~----------------------------------------------- 100 (222)
T KOG0087|consen 75 RYRA-------ITSAYYRGAVGALLVYDITRRQ----------------------------------------------- 100 (222)
T ss_pred hhcc-------ccchhhcccceeEEEEechhHH-----------------------------------------------
Confidence 6543 3457889999999999964211
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 292 (423)
+.+++..-|.++..+ ....-+++++.||+| +... .....++.+.++++++..
T Consensus 101 -Tfenv~rWL~ELRdh------------------------ad~nivimLvGNK~D--L~~l-raV~te~~k~~Ae~~~l~ 152 (222)
T KOG0087|consen 101 -TFENVERWLKELRDH------------------------ADSNIVIMLVGNKSD--LNHL-RAVPTEDGKAFAEKEGLF 152 (222)
T ss_pred -HHHHHHHHHHHHHhc------------------------CCCCeEEEEeecchh--hhhc-cccchhhhHhHHHhcCce
Confidence 111111112222111 125778999999995 4332 344567788888888999
Q ss_pred EEEechhhhHhh
Q 014539 293 RVTISAQVEAEL 304 (423)
Q Consensus 293 ~v~~Sa~~e~~i 304 (423)
++.+||....++
T Consensus 153 f~EtSAl~~tNV 164 (222)
T KOG0087|consen 153 FLETSALDATNV 164 (222)
T ss_pred EEEecccccccH
Confidence 999999887776
No 187
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.23 E-value=9.7e-11 Score=104.81 Aligned_cols=77 Identities=21% Similarity=0.098 Sum_probs=50.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+++++.+. .. ..++ +|.......+.+.+.. ..+.+|||+|...
T Consensus 1 ~ki~vvG~~gvGKTsli~~~~~~~-f~-~~~~-~~~~~~~~~i~~~~~~---------------~~l~i~D~~g~~~--- 59 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGS-YV-QLES-PEGGRFKKEVLVDGQS---------------HLLLIRDEGGAPD--- 59 (158)
T ss_pred CEEEEECCCCCcHHHHHHHHHhCC-CC-CCCC-CCccceEEEEEECCEE---------------EEEEEEECCCCCc---
Confidence 489999999999999999987332 21 1122 2222222334444421 4589999999832
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+.+|++++|+|.++
T Consensus 60 ---------~~~~~~~~~~ilv~d~~~ 77 (158)
T cd04103 60 ---------AQFASWVDAVIFVFSLEN 77 (158)
T ss_pred ---------hhHHhcCCEEEEEEECCC
Confidence 123578999999999754
No 188
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.23 E-value=8.9e-11 Score=107.89 Aligned_cols=83 Identities=17% Similarity=0.088 Sum_probs=52.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.+|||||||+++++++. ......|... +.....+.+++.. ..+.+|||||......
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~-~~~~~~~t~~-~~~~~~i~~~~~~---------------~~l~i~Dt~G~~~~~~ 63 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGY-FPQVYEPTVF-ENYVHDIFVDGLH---------------IELSLWDTAGQEEFDR 63 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC-CCCccCCcce-eeeEEEEEECCEE---------------EEEEEEECCCChhccc
Confidence 489999999999999999999443 2211112111 1111222233311 4589999999854322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.||++++|+|+++
T Consensus 64 -------l~~~~~~~a~~~ilv~dv~~ 83 (189)
T cd04134 64 -------LRSLSYADTDVIMLCFSVDS 83 (189)
T ss_pred -------cccccccCCCEEEEEEECCC
Confidence 12235788999999999754
No 189
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.22 E-value=1.4e-10 Score=104.28 Aligned_cols=82 Identities=18% Similarity=0.110 Sum_probs=53.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.+|||||||++++.++. .. ..+..|+.+.....+.+.+.. .++.+|||||......
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~~ 64 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQ-FP-EVYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDR 64 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCccccceEEEEEECCEE---------------EEEEEEeCCCchhhhh
Confidence 589999999999999999999433 22 223233333333444444422 4589999999843321
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++++|++++|+|+.
T Consensus 65 -------~~~~~~~~~d~~i~v~~~~ 83 (175)
T cd01870 65 -------LRPLSYPDTDVILMCFSID 83 (175)
T ss_pred -------ccccccCCCCEEEEEEECC
Confidence 1123468899999999975
No 190
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.21 E-value=7.6e-11 Score=126.33 Aligned_cols=83 Identities=22% Similarity=0.267 Sum_probs=62.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC--cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~--~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+.|+++|.+|+|||||+|+|+|.. .......++.|++.....+..++ ..+.||||||..
T Consensus 1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~-----------------~~v~~iDtPGhe-- 61 (581)
T TIGR00475 1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD-----------------YRLGFIDVPGHE-- 61 (581)
T ss_pred CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC-----------------EEEEEEECCCHH--
Confidence 358999999999999999999643 12223346778877666666654 458999999962
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.......+.++|++++|+|+.+
T Consensus 62 -----~f~~~~~~g~~~aD~aILVVDa~~ 85 (581)
T TIGR00475 62 -----KFISNAIAGGGGIDAALLVVDADE 85 (581)
T ss_pred -----HHHHHHHhhhccCCEEEEEEECCC
Confidence 344456777889999999999864
No 191
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.21 E-value=1.7e-10 Score=109.26 Aligned_cols=83 Identities=14% Similarity=0.153 Sum_probs=55.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||++||.+|||||||++++++ ..... .+..|..+.....+.+.+.. ..+.||||+|.....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~-~~f~~-~y~pTi~~~~~~~~~~~~~~---------------v~L~iwDt~G~e~~~- 63 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAK-DAYPG-SYVPTVFENYTASFEIDKRR---------------IELNMWDTSGSSYYD- 63 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHc-CCCCC-ccCCccccceEEEEEECCEE---------------EEEEEEeCCCcHHHH-
Confidence 6899999999999999999994 33322 23222222222234444422 458999999974322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......++++|++++|+|+++
T Consensus 64 ------~l~~~~~~~~d~illvfdis~ 84 (222)
T cd04173 64 ------NVRPLAYPDSDAVLICFDISR 84 (222)
T ss_pred ------HHhHHhccCCCEEEEEEECCC
Confidence 223346789999999999754
No 192
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.21 E-value=1.4e-10 Score=107.53 Aligned_cols=82 Identities=21% Similarity=0.297 Sum_probs=48.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCC----CCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF----PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~----p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
++|+++|.+|||||||+|+|+|......... ..+|.... .+..++ ...+.+|||||+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~--~~~~~~----------------~~~l~l~DtpG~~ 63 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRT--PYPHPK----------------FPNVTLWDLPGIG 63 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCce--eeecCC----------------CCCceEEeCCCCC
Confidence 6899999999999999999996432211111 11222211 111111 1358999999996
Q ss_pred CCCCcccchhhHHhhh--hhhcceEEEEEe
Q 014539 133 KGASQGEGLGNKFLSH--IREVDSILQVVR 160 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~--ir~aD~il~Vvd 160 (423)
...... ..++.. +.++|++++|.|
T Consensus 64 ~~~~~~----~~~l~~~~~~~~d~~l~v~~ 89 (197)
T cd04104 64 STAFPP----DDYLEEMKFSEYDFFIIISS 89 (197)
T ss_pred cccCCH----HHHHHHhCccCcCEEEEEeC
Confidence 433221 223222 567899888854
No 193
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.18 E-value=2.9e-10 Score=103.47 Aligned_cols=82 Identities=23% Similarity=0.299 Sum_probs=60.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
....+|.++|.+|||||||++.|..+.... +..|...+...+.+.+ ..+.+||.+|...
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~----~~pT~g~~~~~i~~~~-----------------~~~~~~d~gG~~~ 70 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE----TIPTIGFNIEEIKYKG-----------------YSLTIWDLGGQES 70 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE----EEEESSEEEEEEEETT-----------------EEEEEEEESSSGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc----cCcccccccceeeeCc-----------------EEEEEEecccccc
Confidence 344799999999999999999999433222 3335556666666655 5699999999732
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+...+..+++++|++++|||+++
T Consensus 71 -------~~~~w~~y~~~~~~iIfVvDssd 93 (175)
T PF00025_consen 71 -------FRPLWKSYFQNADGIIFVVDSSD 93 (175)
T ss_dssp -------GGGGGGGGHTTESEEEEEEETTG
T ss_pred -------ccccceeeccccceeEEEEeccc
Confidence 22345567889999999999864
No 194
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.18 E-value=2.2e-10 Score=122.62 Aligned_cols=85 Identities=18% Similarity=0.121 Sum_probs=62.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+.|+++|.+|+|||||+|+|.+ ........++.|.+.....+.+++. .++.||||||...
T Consensus 85 ~r~p~V~I~Ghvd~GKTSLl~~l~~-~~v~~~e~~GIT~~ig~~~v~~~~~----------------~~i~~iDTPGhe~ 147 (587)
T TIGR00487 85 ERPPVVTIMGHVDHGKTSLLDSIRK-TKVAQGEAGGITQHIGAYHVENEDG----------------KMITFLDTPGHEA 147 (587)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh-CCcccccCCceeecceEEEEEECCC----------------cEEEEEECCCCcc
Confidence 3458999999999999999999994 4444455677887765555554331 2699999999754
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. ......++.+|++++|+|+.
T Consensus 148 F~-------~~r~rga~~aDiaILVVda~ 169 (587)
T TIGR00487 148 FT-------SMRARGAKVTDIVVLVVAAD 169 (587)
T ss_pred hh-------hHHHhhhccCCEEEEEEECC
Confidence 32 23345678899999999974
No 195
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.18 E-value=4.6e-10 Score=99.00 Aligned_cols=80 Identities=19% Similarity=0.289 Sum_probs=59.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+.++|-|+|..|+||||++++|.|.....+++ |.-.+...+.+++ .++.+||..|...
T Consensus 15 rE~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~-----------------~~L~iwDvGGq~~- 72 (185)
T KOG0073|consen 15 REVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKG-----------------YTLNIWDVGGQKT- 72 (185)
T ss_pred heeEEEEEecCCCCchhHHHHhcCCCccccCC----ccceeeEEEEecc-----------------eEEEEEEcCCcch-
Confidence 36899999999999999999999554322222 2333344455665 7799999999843
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+.+-+.++...+|++++|||.+
T Consensus 73 ------lr~~W~nYfestdglIwvvDss 94 (185)
T KOG0073|consen 73 ------LRSYWKNYFESTDGLIWVVDSS 94 (185)
T ss_pred ------hHHHHHHhhhccCeEEEEEECc
Confidence 3335667889999999999975
No 196
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.18 E-value=7.2e-11 Score=113.63 Aligned_cols=94 Identities=21% Similarity=0.287 Sum_probs=67.0
Q ss_pred ccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 51 ~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
......++|+++|.+|||||||+|+|+|...+.++.++.+|..+........+ ..+.+|||||
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g-----------------~~i~vIDTPG 88 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDG-----------------FKLNIIDTPG 88 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEECCC
Confidence 34456689999999999999999999988888888888888877766555444 4699999999
Q ss_pred CcCCCCc---ccchhhHHhhhhh--hcceEEEEEec
Q 014539 131 LVKGASQ---GEGLGNKFLSHIR--EVDSILQVVRC 161 (423)
Q Consensus 131 l~~~~~~---~~~l~~~~l~~ir--~aD~il~Vvd~ 161 (423)
+...... .....+.....+. ..|++++|.+.
T Consensus 89 l~~~~~~~~~~~~~~~~I~~~l~~~~idvIL~V~rl 124 (249)
T cd01853 89 LLESVMDQRVNRKILSSIKRYLKKKTPDVVLYVDRL 124 (249)
T ss_pred cCcchhhHHHHHHHHHHHHHHHhccCCCEEEEEEcC
Confidence 9755321 1111122222332 57888888764
No 197
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.17 E-value=2.3e-10 Score=106.23 Aligned_cols=49 Identities=14% Similarity=0.068 Sum_probs=35.6
Q ss_pred CcceEEeeeccccccCCC------------------CCCcchHHHHHHHhhcCCcEEEechhhhHhhcC
Q 014539 256 MKPIIYVANVAESDLADP------------------GSNPHVNEVMNLASDLQSGRVTISAQVEAELTE 306 (423)
Q Consensus 256 ~kpi~~v~N~~~~d~~~~------------------~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~ 306 (423)
..|+++++||.| +... ......++.++++++.+.+++.+||+.+.++.+
T Consensus 120 ~~piilvgNK~D--L~~~~~~~~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e 186 (195)
T cd01873 120 RVPVILVGCKLD--LRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKD 186 (195)
T ss_pred CCCEEEEEEchh--ccccccchhhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHH
Confidence 458999999995 3220 012345678888888899999999999876643
No 198
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.16 E-value=4.4e-10 Score=122.38 Aligned_cols=90 Identities=14% Similarity=0.107 Sum_probs=62.0
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....+.|+|+|.+|+|||||+++|++ .....+..++.|.+.....+.+... + ....+.||||||..
T Consensus 241 ~~r~p~V~IvGhvdvGKTSLld~L~~-~~~~~~e~~GiTq~i~~~~v~~~~~----------~---~~~kItfiDTPGhe 306 (742)
T CHL00189 241 INRPPIVTILGHVDHGKTTLLDKIRK-TQIAQKEAGGITQKIGAYEVEFEYK----------D---ENQKIVFLDTPGHE 306 (742)
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHh-ccCccccCCccccccceEEEEEEec----------C---CceEEEEEECCcHH
Confidence 34558999999999999999999994 4334455567776654443332200 0 02569999999973
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+.......++.+|++++|+|+.+
T Consensus 307 -------~F~~mr~rg~~~aDiaILVVDA~d 330 (742)
T CHL00189 307 -------AFSSMRSRGANVTDIAILIIAADD 330 (742)
T ss_pred -------HHHHHHHHHHHHCCEEEEEEECcC
Confidence 233344567899999999999753
No 199
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.15 E-value=4.1e-11 Score=106.97 Aligned_cols=56 Identities=25% Similarity=0.430 Sum_probs=46.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
..+|+++|.||||||||+|+|.+...+.+++.|++|++... +..+ ..+.++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLM------------------KRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCCCCCeeEeEEE--EEcC------------------CCEEEEECcCC
Confidence 46899999999999999999998888999999999986543 2222 24899999996
No 200
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.15 E-value=1.3e-09 Score=109.98 Aligned_cols=97 Identities=21% Similarity=0.168 Sum_probs=68.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc----Ccc-----------eecCCCC---ccccceE---EEEecCCccchhhccc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN----GKA-----------QAANFPF---CTIEPNV---GIVAVPDPRLHVLSGL 112 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~----~~~-----------~vs~~p~---tT~~~~~---~~~~~~~~r~~~l~~~ 112 (423)
.....||+||+-|+|||||+|++++. ..+ .+++.++ ||.+|.. ..+.+.-
T Consensus 15 ~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~--------- 85 (492)
T TIGR02836 15 QGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEINI--------- 85 (492)
T ss_pred CCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEec---------
Confidence 34589999999999999999999987 556 6888899 8888866 3332211
Q ss_pred cccccccCceEEEEecCCCcCCCCcccchhhH----------------------Hhhhhh-hcceEEEEE-ecc
Q 014539 113 SKSQKAVPASVEFVDIAGLVKGASQGEGLGNK----------------------FLSHIR-EVDSILQVV-RCF 162 (423)
Q Consensus 113 ~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~----------------------~l~~ir-~aD~il~Vv-d~~ 162 (423)
..-....+.|+||+|+......|....++ +...+. ++|+.++|. |.+
T Consensus 86 ---~~~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgs 156 (492)
T TIGR02836 86 ---NEGTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGT 156 (492)
T ss_pred ---cCCCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCC
Confidence 00112469999999996544444433344 456677 788888887 754
No 201
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.15 E-value=4e-10 Score=99.34 Aligned_cols=85 Identities=24% Similarity=0.274 Sum_probs=55.6
Q ss_pred EEEEEecCCCCccHHHHHHhh-cCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE-NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg-~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+|+++|.+|||||||+|.|++ ......++.+++|..+..... + .++.+|||||+.....
T Consensus 1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~~~D~~g~~~~~~ 60 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNV--N------------------DKFRLVDLPGYGYAKV 60 (170)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEc--c------------------CeEEEecCCCcccccc
Confidence 489999999999999999993 444556777777765433221 1 2599999999854311
Q ss_pred c---cc---chhhHHhhhhhhcceEEEEEecc
Q 014539 137 Q---GE---GLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~---~~---~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .+ .+...++....+++++++|+|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~ 92 (170)
T cd01876 61 SKEVKEKWGKLIEEYLENRENLKGVVLLIDSR 92 (170)
T ss_pred CHHHHHHHHHHHHHHHHhChhhhEEEEEEEcC
Confidence 1 11 11223344444678899999864
No 202
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.15 E-value=4.4e-10 Score=103.29 Aligned_cols=83 Identities=19% Similarity=0.238 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcce-----------------ecCCCCccccceEEEEe--cCCccchhhcccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ-----------------AANFPFCTIEPNVGIVA--VPDPRLHVLSGLSKSQK 117 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----------------vs~~p~tT~~~~~~~~~--~~~~r~~~l~~~~~~~~ 117 (423)
..|+++|..++|||||+++|++..... .....+.|.+.....+. ..
T Consensus 4 ~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~--------------- 68 (188)
T PF00009_consen 4 RNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNEN--------------- 68 (188)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTES---------------
T ss_pred EEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhccccccccccccccccc---------------
Confidence 579999999999999999999533211 01123455555444444 22
Q ss_pred ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.|+||||.. .+.......++.+|++++|||+.+
T Consensus 69 --~~~i~~iDtPG~~-------~f~~~~~~~~~~~D~ailvVda~~ 105 (188)
T PF00009_consen 69 --NRKITLIDTPGHE-------DFIKEMIRGLRQADIAILVVDAND 105 (188)
T ss_dssp --SEEEEEEEESSSH-------HHHHHHHHHHTTSSEEEEEEETTT
T ss_pred --ccceeeccccccc-------ceeecccceecccccceeeeeccc
Confidence 2579999999973 244566777899999999999853
No 203
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.14 E-value=1.6e-10 Score=113.63 Aligned_cols=86 Identities=23% Similarity=0.367 Sum_probs=63.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.|||||||++|+|+|...+.++.++.+|..+........+ .++.+|||||+..+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G-----------------~~l~VIDTPGL~d~ 99 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG-----------------FTLNIIDTPGLIEG 99 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC-----------------eEEEEEECCCCCch
Confidence 3589999999999999999999988888888888777766554443333 56999999999764
Q ss_pred CCcccchhhHHhhhhh------hcceEEEEEec
Q 014539 135 ASQGEGLGNKFLSHIR------EVDSILQVVRC 161 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir------~aD~il~Vvd~ 161 (423)
.. ...+..+.++ ..|++|+|.+.
T Consensus 100 ~~----~~e~~~~~ik~~l~~~g~DvVLyV~rL 128 (313)
T TIGR00991 100 GY----INDQAVNIIKRFLLGKTIDVLLYVDRL 128 (313)
T ss_pred HH----HHHHHHHHHHHHhhcCCCCEEEEEecc
Confidence 32 2223333333 58999999653
No 204
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.13 E-value=8.1e-11 Score=117.41 Aligned_cols=62 Identities=31% Similarity=0.420 Sum_probs=52.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
...++++||+||||||||+|+|+|...+.+|++|++|...+.-.+. ..+.|+||||++.+
T Consensus 131 ~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~--------------------~~i~LlDtPGii~~ 190 (322)
T COG1161 131 RKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLD--------------------DGIYLLDTPGIIPP 190 (322)
T ss_pred cceEEEEEcCCCCcHHHHHHHHhcccceeeCCCCceecceEEEEcC--------------------CCeEEecCCCcCCC
Confidence 3478999999999999999999999999999999999876554431 34899999999876
Q ss_pred CC
Q 014539 135 AS 136 (423)
Q Consensus 135 ~~ 136 (423)
..
T Consensus 191 ~~ 192 (322)
T COG1161 191 KF 192 (322)
T ss_pred Cc
Confidence 54
No 205
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.13 E-value=2e-10 Score=108.33 Aligned_cols=81 Identities=15% Similarity=0.126 Sum_probs=57.9
Q ss_pred EEEEecCCCCccHHHHHHhhcCcc------------------------------eecCCCCccccceEEEEecCCccchh
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKA------------------------------QAANFPFCTIEPNVGIVAVPDPRLHV 108 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~------------------------------~vs~~p~tT~~~~~~~~~~~~~r~~~ 108 (423)
|+++|.+++|||||+.+|.....+ ......++|++.....+...+
T Consensus 2 v~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~----- 76 (219)
T cd01883 2 LVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEK----- 76 (219)
T ss_pred EEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCC-----
Confidence 899999999999999999632111 011134666666666665544
Q ss_pred hccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 109 LSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 109 l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.+|||||... +...+...++.+|++++|+|+.+
T Consensus 77 ------------~~i~liDtpG~~~-------~~~~~~~~~~~~d~~i~VvDa~~ 112 (219)
T cd01883 77 ------------YRFTILDAPGHRD-------FVPNMITGASQADVAVLVVDARK 112 (219)
T ss_pred ------------eEEEEEECCChHH-------HHHHHHHHhhhCCEEEEEEECCC
Confidence 5699999999732 23456677889999999999864
No 206
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.12 E-value=1.2e-09 Score=119.95 Aligned_cols=85 Identities=18% Similarity=0.135 Sum_probs=62.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+.|+|+|.+|+|||||+++|.+ .....+..++.|.+.....+.+++ ..+.||||||...
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~-~~v~~~e~~GIT~~iga~~v~~~~-----------------~~ItfiDTPGhe~ 349 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRK-TNVAAGEAGGITQHIGAYQVETNG-----------------GKITFLDTPGHEA 349 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHh-CCccccccCceeeeccEEEEEECC-----------------EEEEEEECCCCcc
Confidence 4458999999999999999999994 334455567777666555555443 4699999999754
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. ......++.+|++++|+|+.+
T Consensus 350 F~-------~m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 350 FT-------AMRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred ch-------hHHHhhhhhCCEEEEEEECCC
Confidence 32 234456788999999999753
No 207
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.12 E-value=4.2e-10 Score=122.12 Aligned_cols=102 Identities=15% Similarity=0.016 Sum_probs=61.3
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceec----------CCCCccccceEEEEecCC---ccchhh--ccccccccc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA----------NFPFCTIEPNVGIVAVPD---PRLHVL--SGLSKSQKA 118 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs----------~~p~tT~~~~~~~~~~~~---~r~~~l--~~~~~~~~~ 118 (423)
...++|+++|.||+|||||+|+|+....+..+ ..+++|+++....+..+. ++-..+ ...+..-..
T Consensus 22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~ 101 (632)
T PRK05506 22 KSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFAT 101 (632)
T ss_pred CCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEcc
Confidence 33478999999999999999999965544442 245666554443221111 000000 000000011
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
...++.|+||||.. .+.......+..+|++++|||+.
T Consensus 102 ~~~~~~liDtPG~~-------~f~~~~~~~~~~aD~~llVvda~ 138 (632)
T PRK05506 102 PKRKFIVADTPGHE-------QYTRNMVTGASTADLAIILVDAR 138 (632)
T ss_pred CCceEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECC
Confidence 23579999999963 23334455689999999999985
No 208
>CHL00071 tufA elongation factor Tu
Probab=99.12 E-value=4.4e-10 Score=115.86 Aligned_cols=84 Identities=19% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce---------------ecCCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~---------------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..+.|+++|.+|+|||||+|+|++..... ....+++|++.....+...+
T Consensus 11 ~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~---------------- 74 (409)
T CHL00071 11 PHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETEN---------------- 74 (409)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCC----------------
Confidence 34789999999999999999999542211 11125666665443333222
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.++.|+||||.. .+.......++.+|++++|+|+.
T Consensus 75 -~~~~~iDtPGh~-------~~~~~~~~~~~~~D~~ilVvda~ 109 (409)
T CHL00071 75 -RHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAA 109 (409)
T ss_pred -eEEEEEECCChH-------HHHHHHHHHHHhCCEEEEEEECC
Confidence 579999999952 34445577789999999999985
No 209
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.12 E-value=7.9e-11 Score=112.36 Aligned_cols=94 Identities=15% Similarity=0.202 Sum_probs=77.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++.|-|+|.++||||||+|||.++...+++..+.+|..++.-...+++ ..+.||||||+..
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~-----------------~~l~lwDtPG~gd 99 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG-----------------ENLVLWDTPGLGD 99 (296)
T ss_pred cCceeEEEecCCCCcHHHHHHHHHhccCceeeecccCCCchhhHHhhccc-----------------cceEEecCCCccc
Confidence 34577889999999999999999987888888888888666655555544 3599999999988
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
+......+...+.+.+...|++++++|+.+.
T Consensus 100 g~~~D~~~r~~~~d~l~~~DLvL~l~~~~dr 130 (296)
T COG3596 100 GKDKDAEHRQLYRDYLPKLDLVLWLIKADDR 130 (296)
T ss_pred chhhhHHHHHHHHHHhhhccEEEEeccCCCc
Confidence 7776777888899999999999999998654
No 210
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.11 E-value=4.4e-10 Score=104.76 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=49.5
Q ss_pred EecCCCCccHHHHHHhhcCcceecCCCCccccc--eEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCccc
Q 014539 62 VGLPNVGKSTLFNAVVENGKAQAANFPFCTIEP--NVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (423)
Q Consensus 62 vG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~--~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 139 (423)
||.+|||||||+++++. ..... .+ ..|+.. ....+.+.+. ...+.||||||.....
T Consensus 1 vG~~~vGKTsLi~r~~~-~~f~~-~~-~~Tig~~~~~~~~~~~~~---------------~~~l~iwDt~G~e~~~---- 58 (200)
T smart00176 1 VGDGGTGKTTFVKRHLT-GEFEK-KY-VATLGVEVHPLVFHTNRG---------------PIRFNVWDTAGQEKFG---- 58 (200)
T ss_pred CCCCCCCHHHHHHHHhc-CCCCC-CC-CCceeEEEEEEEEEECCE---------------EEEEEEEECCCchhhh----
Confidence 69999999999999993 32221 22 223222 2222233221 1469999999985432
Q ss_pred chhhHHhhhhhhcceEEEEEeccC
Q 014539 140 GLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 140 ~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+++.||++++|+|+++
T Consensus 59 ---~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 59 ---GLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred ---hhhHHHhcCCCEEEEEEECCC
Confidence 234567899999999999764
No 211
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.11 E-value=2.8e-10 Score=99.99 Aligned_cols=86 Identities=20% Similarity=0.205 Sum_probs=65.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||-+||.++||||||+-+++ ........-.....|.....+.+.+.+ .++-+|||+|+.+.+
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv-~~~fd~~~~~tIGvDFkvk~m~vdg~~---------------~KlaiWDTAGqErFR 74 (209)
T KOG0080|consen 11 TFKILLIGESGVGKSSLLLRFV-SNTFDDLHPTTIGVDFKVKVMQVDGKR---------------LKLAIWDTAGQERFR 74 (209)
T ss_pred eEEEEEEccCCccHHHHHHHHH-hcccCccCCceeeeeEEEEEEEEcCce---------------EEEEEEeccchHhhh
Confidence 4899999999999999999999 443322111123455566667888866 569999999996554
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
. .+.++.|.|..+|+|.|+...
T Consensus 75 t-------LTpSyyRgaqGiIlVYDVT~R 96 (209)
T KOG0080|consen 75 T-------LTPSYYRGAQGIILVYDVTSR 96 (209)
T ss_pred c-------cCHhHhccCceeEEEEEccch
Confidence 4 567899999999999998643
No 212
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.10 E-value=6.2e-10 Score=115.30 Aligned_cols=86 Identities=17% Similarity=0.140 Sum_probs=60.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce------------------------------ecCCCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~------------------------------vs~~p~tT~~~~~~~~~~~~~ 104 (423)
..++|+++|.+++|||||+++|+...... .....+.|++.....+..++
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~- 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK- 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC-
Confidence 34789999999999999999998421111 01133666666665554443
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.++.||||||.. .+...+...++.+|++++|+|+++.
T Consensus 85 ----------------~~i~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~~ 121 (426)
T TIGR00483 85 ----------------YEVTIVDCPGHR-------DFIKNMITGASQADAAVLVVAVGDG 121 (426)
T ss_pred ----------------eEEEEEECCCHH-------HHHHHHHhhhhhCCEEEEEEECCCC
Confidence 569999999963 2334556667899999999998653
No 213
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.10 E-value=1.4e-09 Score=119.24 Aligned_cols=83 Identities=17% Similarity=0.136 Sum_probs=61.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcce-----ecC------------CCCccccceEEEEecCCccchhhcccccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----vs~------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..|+|+|.+|+|||||+|+|....... +.+ ..++|++.....+...+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~---------------- 74 (689)
T TIGR00484 11 RNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKG---------------- 74 (689)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECC----------------
Confidence 479999999999999999997422211 111 34667666666666655
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||+.+.. ......++.+|++++|+|+.+
T Consensus 75 -~~i~liDTPG~~~~~-------~~~~~~l~~~D~~ilVvda~~ 110 (689)
T TIGR00484 75 -HRINIIDTPGHVDFT-------VEVERSLRVLDGAVAVLDAVG 110 (689)
T ss_pred -eEEEEEECCCCcchh-------HHHHHHHHHhCEEEEEEeCCC
Confidence 679999999996432 246677899999999999864
No 214
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.09 E-value=4.1e-10 Score=121.30 Aligned_cols=82 Identities=23% Similarity=0.309 Sum_probs=59.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcC--cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~--~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
-||++|.+|+|||||+|+|+|.. ........+.|++.....+..++. ..+.||||||..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g----------------~~i~~IDtPGhe--- 62 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG----------------RVLGFIDVPGHE--- 62 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC----------------cEEEEEECCCHH---
Confidence 58999999999999999999643 222334457777665555544331 348899999972
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+....+..+..+|++++|+|+.
T Consensus 63 ----~fi~~m~~g~~~~D~~lLVVda~ 85 (614)
T PRK10512 63 ----KFLSNMLAGVGGIDHALLVVACD 85 (614)
T ss_pred ----HHHHHHHHHhhcCCEEEEEEECC
Confidence 34445677789999999999975
No 215
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.09 E-value=4.7e-09 Score=100.43 Aligned_cols=82 Identities=20% Similarity=0.218 Sum_probs=53.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCccee-----cCC------------CCccccceEEEEecCCccchhhccccccccccC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQA-----ANF------------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~v-----s~~------------p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
.|+++|.+|+|||||+++|+....+.. ... -+.|+......+... .
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~-----------------~ 63 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWE-----------------D 63 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEEC-----------------C
Confidence 389999999999999999985332211 110 011112222222222 3
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.+|||||... +.......++.+|++++|+|+.+
T Consensus 64 ~~i~liDTPG~~~-------f~~~~~~~l~~aD~~IlVvd~~~ 99 (237)
T cd04168 64 TKVNLIDTPGHMD-------FIAEVERSLSVLDGAILVISAVE 99 (237)
T ss_pred EEEEEEeCCCccc-------hHHHHHHHHHHhCeEEEEEeCCC
Confidence 6799999999853 23356678899999999999863
No 216
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=99.08 E-value=1.8e-10 Score=113.14 Aligned_cols=62 Identities=32% Similarity=0.457 Sum_probs=51.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
...+|+++|.||||||||+|+|+|...+.+++.|++|++.+. +.+. .++.++||||+..+
T Consensus 120 ~~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~~~g~T~~~~~--~~~~------------------~~~~l~DtPGi~~~ 179 (287)
T PRK09563 120 RAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKAQQW--IKLG------------------KGLELLDTPGILWP 179 (287)
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCccccCCCCCeEEEEEE--EEeC------------------CcEEEEECCCcCCC
Confidence 457999999999999999999998888899999999988753 2222 35899999999765
Q ss_pred CC
Q 014539 135 AS 136 (423)
Q Consensus 135 ~~ 136 (423)
..
T Consensus 180 ~~ 181 (287)
T PRK09563 180 KL 181 (287)
T ss_pred CC
Confidence 54
No 217
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.08 E-value=1.5e-09 Score=99.55 Aligned_cols=82 Identities=20% Similarity=0.119 Sum_probs=51.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||+++|.+|+|||||+|+++.+.. .....| ++.+.....+.+.+. ...+.+|||||......
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~-~~~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~Dt~g~~~~~~ 64 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF-PEEYHP-TVFENYVTDCRVDGK---------------PVQLALWDTAGQEEYER 64 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCC-CcccCC-cccceEEEEEEECCE---------------EEEEEEEECCCChhccc
Confidence 5899999999999999999983322 211122 222222233333331 14588999999854322
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++++|++++|+|+.
T Consensus 65 -------~~~~~~~~a~~~llv~~i~ 83 (187)
T cd04129 65 -------LRPLSYSKAHVILIGFAVD 83 (187)
T ss_pred -------cchhhcCCCCEEEEEEECC
Confidence 1112468899999999964
No 218
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.06 E-value=1.2e-09 Score=114.58 Aligned_cols=86 Identities=15% Similarity=0.102 Sum_probs=56.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceec----------CCCCcc----------------------ccceEEEEec
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAA----------NFPFCT----------------------IEPNVGIVAV 101 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs----------~~p~tT----------------------~~~~~~~~~~ 101 (423)
...++|+++|.+|+|||||+++|+........ ..+++| ++.....+..
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 44589999999999999999999844332211 112332 3332222222
Q ss_pred CCccchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 102 PDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 102 ~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+ ..++.|+||||.. .+.......++.+|++++|+|+.+
T Consensus 105 ~-----------------~~~i~~iDTPGh~-------~f~~~~~~~l~~aD~allVVDa~~ 142 (474)
T PRK05124 105 E-----------------KRKFIIADTPGHE-------QYTRNMATGASTCDLAILLIDARK 142 (474)
T ss_pred C-----------------CcEEEEEECCCcH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 2 2679999999952 243445556799999999999853
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.06 E-value=1.3e-09 Score=92.90 Aligned_cols=80 Identities=21% Similarity=0.233 Sum_probs=52.2
Q ss_pred EEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCcccc
Q 014539 61 IVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEG 140 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~ 140 (423)
++|.||+|||||+|+|++.... ......+..+........+.. ...+.+|||||......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~D~~g~~~~~~---- 60 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFV-PEEYETTIIDFYSKTIEVDGK---------------KVKLQIWDTAGQERFRS---- 60 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcC-CcccccchhheeeEEEEECCE---------------EEEEEEEecCChHHHHh----
Confidence 5899999999999999954432 122222223333333333221 25699999999854322
Q ss_pred hhhHHhhhhhhcceEEEEEeccC
Q 014539 141 LGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 141 l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++.+|++++|+|++.
T Consensus 61 ---~~~~~~~~~~~~i~v~d~~~ 80 (157)
T cd00882 61 ---LRRLYYRGADGIILVYDVTD 80 (157)
T ss_pred ---HHHHHhcCCCEEEEEEECcC
Confidence 23556789999999999863
No 220
>PRK12739 elongation factor G; Reviewed
Probab=99.05 E-value=3.2e-09 Score=116.29 Aligned_cols=83 Identities=16% Similarity=0.167 Sum_probs=63.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCc-----ceec------------CCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~-----~~vs------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..|+|||.+|+|||||+|+|+.... ..+. ...++|++.....+...+
T Consensus 9 rni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~---------------- 72 (691)
T PRK12739 9 RNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKG---------------- 72 (691)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECC----------------
Confidence 5799999999999999999973211 1122 145677777777666654
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.|+||||..+ +.......++.+|++++|+|+.+
T Consensus 73 -~~i~liDTPG~~~-------f~~e~~~al~~~D~~ilVvDa~~ 108 (691)
T PRK12739 73 -HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVS 108 (691)
T ss_pred -EEEEEEcCCCHHH-------HHHHHHHHHHHhCeEEEEEeCCC
Confidence 6799999999843 34467888999999999999854
No 221
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.05 E-value=3.2e-10 Score=101.05 Aligned_cols=58 Identities=29% Similarity=0.516 Sum_probs=49.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
....+++++|.||+|||||+|+|++.....+++.|+||+++...... ..+.++||||+
T Consensus 98 ~~~~~~~~~G~~~~GKstlin~l~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~~liDtPG~ 155 (155)
T cd01849 98 KKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD--------------------NKIKLLDTPGI 155 (155)
T ss_pred ccCcEEEEEccCCCCHHHHHHHHHccccccccCCCCcccceEEEEec--------------------CCEEEEECCCC
Confidence 34588999999999999999999977778899999999998765431 34899999996
No 222
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.02 E-value=1.5e-09 Score=101.24 Aligned_cols=36 Identities=33% Similarity=0.352 Sum_probs=29.6
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||. +.+...++..++.+|++++|+|+.+
T Consensus 83 ~~i~~iDtPG~-------~~~~~~~~~~~~~~D~~llVvd~~~ 118 (203)
T cd01888 83 RHVSFVDCPGH-------EILMATMLSGAAVMDGALLLIAANE 118 (203)
T ss_pred cEEEEEECCCh-------HHHHHHHHHhhhcCCEEEEEEECCC
Confidence 57999999995 3455677888899999999999853
No 223
>PRK12735 elongation factor Tu; Reviewed
Probab=99.02 E-value=2.8e-09 Score=109.42 Aligned_cols=85 Identities=20% Similarity=0.232 Sum_probs=57.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc------Ccce---------ecCCCCccccceEEEEecCCccchhhccccccccc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~------~~~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
...+.|+++|.+|+|||||+|+|++. .... .....++|++.....+...
T Consensus 10 ~~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~---------------- 73 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETA---------------- 73 (396)
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCC----------------
Confidence 34578999999999999999999952 1110 0113455555433222222
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..++.|+||||.. .+...+...+..+|++++|+|+.
T Consensus 74 -~~~i~~iDtPGh~-------~f~~~~~~~~~~aD~~llVvda~ 109 (396)
T PRK12735 74 -NRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAA 109 (396)
T ss_pred -CcEEEEEECCCHH-------HHHHHHHhhhccCCEEEEEEECC
Confidence 2579999999973 34445667788999999999985
No 224
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.02 E-value=4.4e-10 Score=109.88 Aligned_cols=62 Identities=34% Similarity=0.417 Sum_probs=51.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
...+|++||.||||||||+|+|++...+.+++.|++|+.++.- .+. .++.++||||+..+
T Consensus 117 ~~~~~~~vG~~nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~~------------------~~~~l~DtPG~~~~ 176 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI--KLS------------------DGLELLDTPGILWP 176 (276)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeecceEEE--EeC------------------CCEEEEECCCcccC
Confidence 3578999999999999999999987778999999999987533 222 24899999999765
Q ss_pred CC
Q 014539 135 AS 136 (423)
Q Consensus 135 ~~ 136 (423)
..
T Consensus 177 ~~ 178 (276)
T TIGR03596 177 KF 178 (276)
T ss_pred CC
Confidence 43
No 225
>PRK00007 elongation factor G; Reviewed
Probab=99.01 E-value=6e-09 Score=114.16 Aligned_cols=83 Identities=17% Similarity=0.177 Sum_probs=61.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCc-----ceec------------CCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGK-----AQAA------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~-----~~vs------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
.+|+|+|.+|+|||||+|+|..... ..++ ...++|++.....+...+
T Consensus 11 rni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~---------------- 74 (693)
T PRK00007 11 RNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKD---------------- 74 (693)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECC----------------
Confidence 5899999999999999999962111 1122 245677777666666554
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.|+||||... +.......++.+|++++|+|+.+
T Consensus 75 -~~~~liDTPG~~~-------f~~ev~~al~~~D~~vlVvda~~ 110 (693)
T PRK00007 75 -HRINIIDTPGHVD-------FTIEVERSLRVLDGAVAVFDAVG 110 (693)
T ss_pred -eEEEEEeCCCcHH-------HHHHHHHHHHHcCEEEEEEECCC
Confidence 6799999999743 33357788899999999999853
No 226
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.01 E-value=2.3e-09 Score=110.47 Aligned_cols=83 Identities=18% Similarity=0.125 Sum_probs=54.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecC----------CC----------------------CccccceEEEEecCCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN----------FP----------------------FCTIEPNVGIVAVPDP 104 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~----------~p----------------------~tT~~~~~~~~~~~~~ 104 (423)
++|+++|.+++|||||+++|.......... .. +.|++.....+..+
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~-- 78 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTD-- 78 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccC--
Confidence 479999999999999999997432221110 01 22333333333222
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..++.|+||||.. .+.......+..+|++++|+|+.+
T Consensus 79 ---------------~~~~~liDtPGh~-------~f~~~~~~~~~~aD~allVVda~~ 115 (406)
T TIGR02034 79 ---------------KRKFIVADTPGHE-------QYTRNMATGASTADLAVLLVDARK 115 (406)
T ss_pred ---------------CeEEEEEeCCCHH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 2579999999963 233445567899999999999853
No 227
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=99.00 E-value=2.7e-10 Score=116.31 Aligned_cols=61 Identities=34% Similarity=0.397 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+.||+||+|||||||+||+|.|.+.+.||..|+.|++.+.-.+. ..+.|.|+||++-+.
T Consensus 314 ~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQTi~ls--------------------~~v~LCDCPGLVfPS 373 (562)
T KOG1424|consen 314 VVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQTIFLS--------------------PSVCLCDCPGLVFPS 373 (562)
T ss_pred eeEEEeecCCCCchhHHHHHHhcCceeeeecCCCCcceeEEEEcC--------------------CCceecCCCCccccC
Confidence 489999999999999999999999999999999999988776552 348999999998765
Q ss_pred C
Q 014539 136 S 136 (423)
Q Consensus 136 ~ 136 (423)
.
T Consensus 374 f 374 (562)
T KOG1424|consen 374 F 374 (562)
T ss_pred C
Confidence 4
No 228
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.99 E-value=4.1e-09 Score=108.16 Aligned_cols=85 Identities=19% Similarity=0.197 Sum_probs=58.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc------Ccce---------ecCCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~------~~~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..+.|+++|.+++|||||+++|++. .... .....++|++.....+..+
T Consensus 11 ~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~----------------- 73 (394)
T TIGR00485 11 PHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETE----------------- 73 (394)
T ss_pred ceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCC-----------------
Confidence 3478999999999999999999842 1111 1112567777543333222
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..++.||||||..+ +.......+..+|++++|+|+.+
T Consensus 74 ~~~~~liDtpGh~~-------f~~~~~~~~~~~D~~ilVvda~~ 110 (394)
T TIGR00485 74 NRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSATD 110 (394)
T ss_pred CEEEEEEECCchHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 25699999999842 33455667788999999999853
No 229
>PRK10218 GTP-binding protein; Provisional
Probab=98.99 E-value=7.3e-09 Score=111.23 Aligned_cols=83 Identities=23% Similarity=0.267 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecC---------------CCCccccceEEEEecCCccchhhccccccccccCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~---------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
.+|+|+|.+++|||||+++|+......... ..+.|+......+...+ .
T Consensus 6 RnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~-----------------~ 68 (607)
T PRK10218 6 RNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWND-----------------Y 68 (607)
T ss_pred eEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCC-----------------E
Confidence 579999999999999999999532221111 12333333333333332 5
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
++.+|||||.... .......++.+|++++|+|+.+
T Consensus 69 ~inliDTPG~~df-------~~~v~~~l~~aDg~ILVVDa~~ 103 (607)
T PRK10218 69 RINIVDTPGHADF-------GGEVERVMSMVDSVLLVVDAFD 103 (607)
T ss_pred EEEEEECCCcchh-------HHHHHHHHHhCCEEEEEEeccc
Confidence 7999999998543 2355677899999999999853
No 230
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.98 E-value=3.7e-09 Score=113.14 Aligned_cols=97 Identities=18% Similarity=0.083 Sum_probs=56.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCC-ccccceEEEEecCCccchhhcccc-ccc--cccCceEEEEecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLS-KSQ--KAVPASVEFVDIAGL 131 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-tT~~~~~~~~~~~~~r~~~l~~~~-~~~--~~~~~~i~lvDtpGl 131 (423)
.+.|+++|.+|+|||||+|+|++... .+..|+ +|.+.....++.+. ........ ... +....++.||||||.
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v--~~~e~ggiTq~iG~~~v~~~~--~~~~~~~~~~~~~v~~~~~~l~~iDTpG~ 79 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAV--AKREAGGITQHIGATEIPMDV--IEGICGDLLKKFKIRLKIPGLLFIDTPGH 79 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcccc--ccccCCceecccCeeEeeecc--ccccccccccccccccccCcEEEEECCCc
Confidence 46799999999999999999995432 233443 45433222222211 00000000 000 001134899999997
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... .......++.||++++|+|+.+
T Consensus 80 e~f-------~~l~~~~~~~aD~~IlVvD~~~ 104 (590)
T TIGR00491 80 EAF-------TNLRKRGGALADLAILIVDINE 104 (590)
T ss_pred HhH-------HHHHHHHHhhCCEEEEEEECCc
Confidence 432 2234456789999999999863
No 231
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.98 E-value=1.9e-08 Score=97.77 Aligned_cols=82 Identities=21% Similarity=0.266 Sum_probs=54.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcce-----ec------C------CCCccccceEEEEecCCccchhhccccccccccC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQ-----AA------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~-----vs------~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
.|+|+|.+|+|||||+|+|.+..... +. + ..+.|+.+....+...+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~----------------- 63 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKG----------------- 63 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECC-----------------
Confidence 38999999999999999998432211 10 0 01223333333333332
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.+|||||... +.......++.||++++|+|+..
T Consensus 64 ~~i~liDtPG~~~-------f~~~~~~~l~~aD~~i~Vvd~~~ 99 (268)
T cd04170 64 HKINLIDTPGYAD-------FVGETRAALRAADAALVVVSAQS 99 (268)
T ss_pred EEEEEEECcCHHH-------HHHHHHHHHHHCCEEEEEEeCCC
Confidence 5699999999842 33456778899999999999864
No 232
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=98.98 E-value=6.7e-09 Score=97.31 Aligned_cols=84 Identities=15% Similarity=0.049 Sum_probs=52.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEec--CCccchhhccccccccccCceEEEEecCCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV--PDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~--~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..+||+++|.+|||||||++++..+. .. +...+|.........+ .+. ...+.+|||||..
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~-~~--~~~~~t~~~~~~~~~~~~~~~---------------~i~i~~~Dt~g~~ 69 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGE-FE--KKYIPTLGVEVHPLKFYTNCG---------------PICFNVWDTAGQE 69 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCC-CC--CCCCCccceEEEEEEEEECCe---------------EEEEEEEECCCch
Confidence 44899999999999999998665232 11 1122333333322221 221 2468999999974
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... ......++++|++++|+|+++
T Consensus 70 ~~~-------~~~~~~~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 70 KFG-------GLRDGYYIKGQCAIIMFDVTS 93 (215)
T ss_pred hhh-------hhhHHHhccCCEEEEEEECcC
Confidence 321 123455778999999999753
No 233
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=98.98 E-value=2.1e-09 Score=90.53 Aligned_cols=84 Identities=19% Similarity=0.269 Sum_probs=49.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcc-eecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~-~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
||.++|.+|||||||+++|.+.... ...+.+..+.........+..++ ..+.+||++|......
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~d~~g~~~~~~ 65 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDR---------------QSLQFWDFGGQEEFYS 65 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEE---------------EEEEEEEESSSHCHHC
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCc---------------eEEEEEecCccceecc
Confidence 6999999999999999999965543 11111111111111122222211 3488999999843221
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....+..+|++++|+|+++
T Consensus 66 -------~~~~~~~~~d~~ilv~D~s~ 85 (119)
T PF08477_consen 66 -------QHQFFLKKADAVILVYDLSD 85 (119)
T ss_dssp -------TSHHHHHHSCEEEEEEECCG
T ss_pred -------cccchhhcCcEEEEEEcCCC
Confidence 11122889999999999763
No 234
>PRK12736 elongation factor Tu; Reviewed
Probab=98.98 E-value=4.8e-09 Score=107.65 Aligned_cols=86 Identities=19% Similarity=0.178 Sum_probs=58.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCc------ce---------ecCCCCccccceEEEEecCCccchhhccccccccc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK------AQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~------~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
...+.|+++|.+++|||||+++|++... .. .....++|++.....+...+
T Consensus 10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~--------------- 74 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEK--------------- 74 (394)
T ss_pred CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCC---------------
Confidence 3457899999999999999999995211 00 11144666655333322222
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.|+||||.. .+.......+..+|++++|+|+.+
T Consensus 75 --~~i~~iDtPGh~-------~f~~~~~~~~~~~d~~llVvd~~~ 110 (394)
T PRK12736 75 --RHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVAATD 110 (394)
T ss_pred --cEEEEEECCCHH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 568999999963 333455677789999999999753
No 235
>PLN03127 Elongation factor Tu; Provisional
Probab=98.98 E-value=7.9e-09 Score=107.54 Aligned_cols=86 Identities=20% Similarity=0.178 Sum_probs=60.9
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhc------Ccce---------ecCCCCccccceEEEEecCCccchhhcccccccc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVEN------GKAQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~------~~~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~ 117 (423)
....+.|+++|.+|+|||||+++|++. .... ....+++|++.....++.++
T Consensus 58 ~k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~-------------- 123 (447)
T PLN03127 58 TKPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAK-------------- 123 (447)
T ss_pred CCceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCC--------------
Confidence 345588999999999999999999832 1111 11236778776555444333
Q ss_pred ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.++.|+||||..+ +.......+..+|++++|+|+.
T Consensus 124 ---~~i~~iDtPGh~~-------f~~~~~~g~~~aD~allVVda~ 158 (447)
T PLN03127 124 ---RHYAHVDCPGHAD-------YVKNMITGAAQMDGGILVVSAP 158 (447)
T ss_pred ---eEEEEEECCCccc-------hHHHHHHHHhhCCEEEEEEECC
Confidence 5799999999832 3444555667899999999975
No 236
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.97 E-value=8.3e-09 Score=96.27 Aligned_cols=82 Identities=24% Similarity=0.394 Sum_probs=55.2
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
.|.++|.+|||||||+++|++.... ..++ +..++......+.. . ....+.+|||||..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~--~t~~--s~~~~~~~~~~~~~-----------~--~~~~~~l~D~pG~~~---- 60 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYR--STVT--SIEPNVATFILNSE-----------G--KGKKFRLVDVPGHPK---- 60 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCC--CccC--cEeecceEEEeecC-----------C--CCceEEEEECCCCHH----
Confidence 6899999999999999999944221 1222 22344444333210 0 124589999999743
Q ss_pred ccchhhHHhhhhhhc-ceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREV-DSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~a-D~il~Vvd~~~ 163 (423)
+...+...++.+ +++++|+|+++
T Consensus 61 ---~~~~~~~~~~~~~~~vV~VvD~~~ 84 (203)
T cd04105 61 ---LRDKLLETLKNSAKGIVFVVDSAT 84 (203)
T ss_pred ---HHHHHHHHHhccCCEEEEEEECcc
Confidence 345667788898 99999999853
No 237
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.97 E-value=7.5e-09 Score=111.26 Aligned_cols=86 Identities=19% Similarity=0.156 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceec--------C------CCCccccceEEEEecC--CccchhhccccccccccC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------N------FPFCTIEPNVGIVAVP--DPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs--------~------~p~tT~~~~~~~~~~~--~~r~~~l~~~~~~~~~~~ 120 (423)
..|+|||.+++|||||+++|+....+... + ..+.|+......+.+. +. ..
T Consensus 4 RNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g--------------~~ 69 (595)
T TIGR01393 4 RNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDG--------------ET 69 (595)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCC--------------CE
Confidence 36999999999999999999843222111 0 1133433322222221 10 01
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||.... .......++.||++++|+|+++
T Consensus 70 ~~l~liDTPG~~dF-------~~~v~~~l~~aD~aILVvDat~ 105 (595)
T TIGR01393 70 YVLNLIDTPGHVDF-------SYEVSRSLAACEGALLLVDAAQ 105 (595)
T ss_pred EEEEEEECCCcHHH-------HHHHHHHHHhCCEEEEEecCCC
Confidence 46899999999643 2345677899999999999864
No 238
>PLN00023 GTP-binding protein; Provisional
Probab=98.97 E-value=6.2e-09 Score=103.09 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|..+||||||++++++ ........|....+.....+.+.+.-- .+..+. ........+.||||+|..+..
T Consensus 21 ~iKIVLLGdsGVGKTSLI~rf~~-g~F~~~~~pTIG~d~~ik~I~~~~~~~-~~~~ik-~d~~k~v~LqIWDTAGqErfr 97 (334)
T PLN00023 21 QVRVLVVGDSGVGKSSLVHLIVK-GSSIARPPQTIGCTVGVKHITYGSPGS-SSNSIK-GDSERDFFVELWDVSGHERYK 97 (334)
T ss_pred ceEEEEECCCCCcHHHHHHHHhc-CCcccccCCceeeeEEEEEEEECCccc-cccccc-ccCCceEEEEEEECCCChhhh
Confidence 47999999999999999999994 333222223222222223333321000 000000 000012458999999985443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ....+++++|++|+|+|+++
T Consensus 98 s-------L~~~yyr~AdgiILVyDITd 118 (334)
T PLN00023 98 D-------CRSLFYSQINGVIFVHDLSQ 118 (334)
T ss_pred h-------hhHHhccCCCEEEEEEeCCC
Confidence 2 34456899999999999764
No 239
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.96 E-value=6.9e-09 Score=90.20 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=71.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
-+||++||..+||||.|..++| +...+.+.-....++.....+.+.++. .++++|||+|..+.+
T Consensus 7 lfkivlvgnagvgktclvrrft-qglfppgqgatigvdfmiktvev~gek---------------iklqiwdtagqerfr 70 (213)
T KOG0095|consen 7 LFKIVLVGNAGVGKTCLVRRFT-QGLFPPGQGATIGVDFMIKTVEVNGEK---------------IKLQIWDTAGQERFR 70 (213)
T ss_pred eEEEEEEccCCcCcchhhhhhh-ccCCCCCCCceeeeeEEEEEEEECCeE---------------EEEEEeeccchHHHH
Confidence 4799999999999999999999 776666655566667777778888866 569999999996544
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~ 166 (423)
+ -.-++.|.|+++++|.|.+-.+.
T Consensus 71 s-------itqsyyrsahalilvydiscqps 94 (213)
T KOG0095|consen 71 S-------ITQSYYRSAHALILVYDISCQPS 94 (213)
T ss_pred H-------HHHHHhhhcceEEEEEecccCcc
Confidence 3 56788999999999999876553
No 240
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.96 E-value=1.1e-09 Score=96.15 Aligned_cols=56 Identities=36% Similarity=0.485 Sum_probs=46.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
+++++|.||||||||+|+|++.....+++.|++|++...-.+ + ..+.+|||||+..
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~~~~~~~~~~--~------------------~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIFL--T------------------PTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeCCCCCcccceEEEEe--C------------------CCEEEEECCCcCC
Confidence 899999999999999999998777789999999988654332 2 2489999999853
No 241
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.95 E-value=6.3e-10 Score=102.39 Aligned_cols=56 Identities=27% Similarity=0.320 Sum_probs=46.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC--------cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEe
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG--------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~--------~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvD 127 (423)
...++++|.||||||||+|+|.+.. .+.++..|+||+++....+. ..+.++|
T Consensus 127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~--------------------~~~~~~D 186 (190)
T cd01855 127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLG--------------------NGKKLYD 186 (190)
T ss_pred CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecC--------------------CCCEEEe
Confidence 4689999999999999999999643 35788999999998766552 1379999
Q ss_pred cCCC
Q 014539 128 IAGL 131 (423)
Q Consensus 128 tpGl 131 (423)
|||+
T Consensus 187 tPG~ 190 (190)
T cd01855 187 TPGI 190 (190)
T ss_pred CcCC
Confidence 9996
No 242
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=98.95 E-value=2e-09 Score=94.89 Aligned_cols=155 Identities=24% Similarity=0.246 Sum_probs=100.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++..+||.+-||||+|+..+|.++-+..+ ||..|+=- +.+|.++-... ..+++||||+|+.+.
T Consensus 7 yqfrlivigdstvgkssll~~ft~gkfaels-------dptvgvdf-----farlie~~pg~---riklqlwdtagqerf 71 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELS-------DPTVGVDF-----FARLIELRPGY---RIKLQLWDTAGQERF 71 (213)
T ss_pred EEEEEEEEcCCcccHHHHHHHHhcCcccccC-------CCccchHH-----HHHHHhcCCCc---EEEEEEeeccchHHH
Confidence 3478999999999999999999955544443 44444300 01111221111 256999999999655
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
++ -+.++.|++-.++.|.|.++..+..|+.+|+.
T Consensus 72 rs-------itksyyrnsvgvllvyditnr~sfehv~~w~~--------------------------------------- 105 (213)
T KOG0091|consen 72 RS-------ITKSYYRNSVGVLLVYDITNRESFEHVENWVK--------------------------------------- 105 (213)
T ss_pred HH-------HHHHHhhcccceEEEEeccchhhHHHHHHHHH---------------------------------------
Confidence 44 56789999999999999876555444322110
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcce-EEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPI-IYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi-~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
+.+-++. + ..|++ .+|..|+ |+... +....++.+++++.+|..|
T Consensus 106 ---------ea~m~~q-~----------------------P~k~VFlLVGhKs--DL~Sq-RqVt~EEaEklAa~hgM~F 150 (213)
T KOG0091|consen 106 ---------EAAMATQ-G----------------------PDKVVFLLVGHKS--DLQSQ-RQVTAEEAEKLAASHGMAF 150 (213)
T ss_pred ---------HHHHhcC-C----------------------CCeeEEEEecccc--chhhh-ccccHHHHHHHHHhcCceE
Confidence 0000011 1 22333 3455677 45443 5667888999999999999
Q ss_pred EEechhhhHhhc
Q 014539 294 VTISAQVEAELT 305 (423)
Q Consensus 294 v~~Sa~~e~~i~ 305 (423)
|.+||+.+.|+.
T Consensus 151 VETSak~g~NVe 162 (213)
T KOG0091|consen 151 VETSAKNGCNVE 162 (213)
T ss_pred EEecccCCCcHH
Confidence 999999998883
No 243
>PLN03126 Elongation factor Tu; Provisional
Probab=98.94 E-value=8.9e-09 Score=107.86 Aligned_cols=86 Identities=17% Similarity=0.166 Sum_probs=58.0
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCccee---------------cCCCCccccceEEEEecCCccchhhccccccccc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQA---------------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~v---------------s~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
...++|+++|.+|+|||||+++|++...... ....+.|++.....+...+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~--------------- 143 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETEN--------------- 143 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCC---------------
Confidence 4457899999999999999999995322211 1123344433333332222
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.|+||||..+ +.......+..+|++++|+|+.+
T Consensus 144 --~~i~liDtPGh~~-------f~~~~~~g~~~aD~ailVVda~~ 179 (478)
T PLN03126 144 --RHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVSGAD 179 (478)
T ss_pred --cEEEEEECCCHHH-------HHHHHHHHHhhCCEEEEEEECCC
Confidence 4689999999742 34455777889999999999853
No 244
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=98.94 E-value=3.1e-09 Score=92.27 Aligned_cols=150 Identities=16% Similarity=0.202 Sum_probs=102.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++..|+|.|+||||+|+-++. ......+....+..|.....+++++.+ ..+++|||+|...
T Consensus 9 fkllIigDsgVGKssLl~rF~-ddtFs~sYitTiGvDfkirTv~i~G~~---------------VkLqIwDtAGqEr--- 69 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFA-DDTFSGSYITTIGVDFKIRTVDINGDR---------------VKLQIWDTAGQER--- 69 (198)
T ss_pred HHHHeecCCcccHHHHHHHHh-hcccccceEEEeeeeEEEEEeecCCcE---------------EEEEEeecccHHH---
Confidence 567899999999999999999 555554444455567777888999877 5699999999843
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
+....-.+.|..++++.|.|+...++..
T Consensus 70 ----Frtitstyyrgthgv~vVYDVTn~ESF~------------------------------------------------ 97 (198)
T KOG0079|consen 70 ----FRTITSTYYRGTHGVIVVYDVTNGESFN------------------------------------------------ 97 (198)
T ss_pred ----HHHHHHHHccCCceEEEEEECcchhhhH------------------------------------------------
Confidence 3334456688899999999986543210
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
++..-|+++... --.-|-++|.||.++ ++- .-...+..+.|+...|+.++.+
T Consensus 98 Nv~rWLeei~~n-------------------------cdsv~~vLVGNK~d~--~~R-rvV~t~dAr~~A~~mgie~FET 149 (198)
T KOG0079|consen 98 NVKRWLEEIRNN-------------------------CDSVPKVLVGNKNDD--PER-RVVDTEDARAFALQMGIELFET 149 (198)
T ss_pred hHHHHHHHHHhc-------------------------CccccceecccCCCC--ccc-eeeehHHHHHHHHhcCchheeh
Confidence 111111111100 023356779999853 321 2335677889999999999999
Q ss_pred chhhhHhhc
Q 014539 297 SAQVEAELT 305 (423)
Q Consensus 297 Sa~~e~~i~ 305 (423)
||+-..++.
T Consensus 150 SaKe~~NvE 158 (198)
T KOG0079|consen 150 SAKENENVE 158 (198)
T ss_pred hhhhcccch
Confidence 998766653
No 245
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.94 E-value=1.8e-09 Score=96.67 Aligned_cols=101 Identities=24% Similarity=0.266 Sum_probs=61.2
Q ss_pred EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE-ecCCcc-----------------chhh-----------
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-AVPDPR-----------------LHVL----------- 109 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~-~~~~~r-----------------~~~l----------- 109 (423)
|+++|..++|||||+|+|+|....+++.-| ||.-+..-.. .-+... +..+
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGP-CTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSI 79 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSS-TTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccc-cccceeEEEecccCccccccccccccccccchhhHHHHHHhhhcccccc
Confidence 799999999999999999987666655554 3433332221 111100 0000
Q ss_pred c----------cccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 110 S----------GLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 110 ~----------~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ..+.+.......+.|+||||+........ ..+.+++..||++++|+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~---~~~~~~~~~~d~vi~V~~~~~ 140 (168)
T PF00350_consen 80 EGKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT---EITEEYLPKADVVIFVVDANQ 140 (168)
T ss_dssp HTSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS---HHHHHHHSTTEEEEEEEETTS
T ss_pred cccccccccceeEEeeccccccceEEEeCCccccchhhhH---HHHHHhhccCCEEEEEeccCc
Confidence 0 01111122345599999999965333222 456777799999999999854
No 246
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.93 E-value=2.6e-09 Score=113.15 Aligned_cols=93 Identities=25% Similarity=0.255 Sum_probs=61.7
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|+|+|.|||||||++|+|+|...+.++.+..+|...........+ .++.+|||||+.
T Consensus 115 LdfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG-----------------~~L~VIDTPGL~ 177 (763)
T TIGR00993 115 LDFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG-----------------VKIRVIDTPGLK 177 (763)
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECC-----------------ceEEEEECCCCC
Confidence 344578999999999999999999987777777764334344333333333 469999999998
Q ss_pred CCCCcc---cchhhHHhhhhh--hcceEEEEEecc
Q 014539 133 KGASQG---EGLGNKFLSHIR--EVDSILQVVRCF 162 (423)
Q Consensus 133 ~~~~~~---~~l~~~~l~~ir--~aD~il~Vvd~~ 162 (423)
...... ..+.......+. .+|++|+|.+..
T Consensus 178 dt~~dq~~neeILk~Ik~~Lsk~gpDVVLlV~RLd 212 (763)
T TIGR00993 178 SSASDQSKNEKILSSVKKFIKKNPPDIVLYVDRLD 212 (763)
T ss_pred ccccchHHHHHHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 653211 122222333333 479999998753
No 247
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.92 E-value=1.5e-09 Score=94.20 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=101.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
-.|+.|+|...+|||||+-+-. ......+-+....++.....+--.+.| ..+++|||+|+..
T Consensus 21 mfKlliiGnssvGKTSfl~ry~-ddSFt~afvsTvGidFKvKTvyr~~kR---------------iklQiwDTagqEr-- 82 (193)
T KOG0093|consen 21 MFKLLIIGNSSVGKTSFLFRYA-DDSFTSAFVSTVGIDFKVKTVYRSDKR---------------IKLQIWDTAGQER-- 82 (193)
T ss_pred eeeEEEEccCCccchhhhHHhh-ccccccceeeeeeeeEEEeEeeecccE---------------EEEEEEecccchh--
Confidence 3699999999999999999998 444433333333444444444445555 4599999999954
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+..-.-.++|+|+++|++.|..++++. ..+ -.+...+
T Consensus 83 -----yrtiTTayyRgamgfiLmyDitNeeSf-------------~sv---------------qdw~tqI---------- 119 (193)
T KOG0093|consen 83 -----YRTITTAYYRGAMGFILMYDITNEESF-------------NSV---------------QDWITQI---------- 119 (193)
T ss_pred -----hhHHHHHHhhccceEEEEEecCCHHHH-------------HHH---------------HHHHHHh----------
Confidence 334667889999999999997654321 100 0010000
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
+. + . ..+.|+++|+||.+ +.+. +-...++...++.+.|..+..
T Consensus 120 -----------------kt-y--s--------------w~naqvilvgnKCD--md~e-Rvis~e~g~~l~~~LGfefFE 162 (193)
T KOG0093|consen 120 -----------------KT-Y--S--------------WDNAQVILVGNKCD--MDSE-RVISHERGRQLADQLGFEFFE 162 (193)
T ss_pred -----------------ee-e--e--------------ccCceEEEEecccC--Cccc-eeeeHHHHHHHHHHhChHHhh
Confidence 00 0 1 25779999999995 4332 344567788888888999999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+|||..-++.+
T Consensus 163 tSaK~NinVk~ 173 (193)
T KOG0093|consen 163 TSAKENINVKQ 173 (193)
T ss_pred hcccccccHHH
Confidence 99998766643
No 248
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.92 E-value=1.8e-08 Score=108.14 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=56.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceec---------------CCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAA---------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs---------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
.|+|+|..++|||||+++|+........ ..-+.|+......+.+.+ .+
T Consensus 3 NIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~-----------------~k 65 (594)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNG-----------------TK 65 (594)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECC-----------------EE
Confidence 5999999999999999999842221111 012344444333444433 57
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||... +.......++.+|++++|||+++
T Consensus 66 inlIDTPGh~D-------F~~ev~~~l~~aD~alLVVDa~~ 99 (594)
T TIGR01394 66 INIVDTPGHAD-------FGGEVERVLGMVDGVLLLVDASE 99 (594)
T ss_pred EEEEECCCHHH-------HHHHHHHHHHhCCEEEEEEeCCC
Confidence 99999999732 34456778899999999999864
No 249
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.91 E-value=4.5e-09 Score=108.27 Aligned_cols=100 Identities=22% Similarity=0.175 Sum_probs=54.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc--ceecCCCCccccceEEEEecC-Cccchhhcccccccc---------ccCceE
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQK---------AVPASV 123 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~--~~vs~~p~tT~~~~~~~~~~~-~~r~~~l~~~~~~~~---------~~~~~i 123 (423)
.++|+++|.+++|||||+++|++... .......+.|++.....+... .+.+.. ...+.... .....+
T Consensus 4 ~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 4 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDG-PECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred eEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCc-cccccccccccccccccccccEE
Confidence 47899999999999999999985211 000011122322111111000 000000 00000000 012468
Q ss_pred EEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+|||||.. .+...+...+..+|++++|+|+.+
T Consensus 83 ~liDtPGh~-------~f~~~~~~g~~~aD~aIlVVDa~~ 115 (406)
T TIGR03680 83 SFVDAPGHE-------TLMATMLSGAALMDGALLVIAANE 115 (406)
T ss_pred EEEECCCHH-------HHHHHHHHHHHHCCEEEEEEECCC
Confidence 999999973 344566777889999999999864
No 250
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.90 E-value=6e-09 Score=90.90 Aligned_cols=152 Identities=17% Similarity=0.123 Sum_probs=99.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
.-+|+.++|..+.|||.|+..+. .....-..-....++.-..++.++..+ .++++|||+|+.+.
T Consensus 8 yLfKfl~iG~aGtGKSCLLh~Fi-e~kfkDdssHTiGveFgSrIinVGgK~---------------vKLQIWDTAGQErF 71 (214)
T KOG0086|consen 8 YLFKFLVIGSAGTGKSCLLHQFI-ENKFKDDSSHTIGVEFGSRIVNVGGKT---------------VKLQIWDTAGQERF 71 (214)
T ss_pred hhheeEEeccCCCChhHHHHHHH-HhhhcccccceeeeeecceeeeecCcE---------------EEEEEeecccHHHH
Confidence 34799999999999999999999 443322211222334444556777755 56999999999544
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
+ ....++.|.|-..++|.|+...+. + +..-+|+..
T Consensus 72 R-------SVtRsYYRGAAGAlLVYD~Tsrds-------------f---------------naLtnWL~D---------- 106 (214)
T KOG0086|consen 72 R-------SVTRSYYRGAAGALLVYDITSRDS-------------F---------------NALTNWLTD---------- 106 (214)
T ss_pred H-------HHHHHHhccccceEEEEeccchhh-------------H---------------HHHHHHHHH----------
Confidence 3 367789999999999999754321 1 111112111
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
-+.+- ..+.-++++.||. |+... .+....+...++.++...+.
T Consensus 107 -----------------aR~lA-----------------s~nIvviL~GnKk--DL~~~-R~VtflEAs~FaqEnel~fl 149 (214)
T KOG0086|consen 107 -----------------ARTLA-----------------SPNIVVILCGNKK--DLDPE-REVTFLEASRFAQENELMFL 149 (214)
T ss_pred -----------------HHhhC-----------------CCcEEEEEeCChh--hcChh-hhhhHHHHHhhhcccceeee
Confidence 00000 1334466677888 44333 45566777788888888899
Q ss_pred EechhhhHhh
Q 014539 295 TISAQVEAEL 304 (423)
Q Consensus 295 ~~Sa~~e~~i 304 (423)
.+||+++.++
T Consensus 150 ETSa~TGeNV 159 (214)
T KOG0086|consen 150 ETSALTGENV 159 (214)
T ss_pred eecccccccH
Confidence 9999999876
No 251
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.90 E-value=2.6e-09 Score=96.85 Aligned_cols=58 Identities=33% Similarity=0.438 Sum_probs=47.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..++++++|.||||||||+|+|++.....+++.|+||++.....+. ..+.++||||+.
T Consensus 114 ~~~~~~~~G~~~vGKstlin~l~~~~~~~~~~~~~~T~~~~~~~~~--------------------~~~~~iDtpG~~ 171 (171)
T cd01856 114 RGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKIS--------------------PGIYLLDTPGIL 171 (171)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCceeecCCCCEEeeeEEEEec--------------------CCEEEEECCCCC
Confidence 4479999999999999999999977767889999999886554331 238999999983
No 252
>PRK00049 elongation factor Tu; Reviewed
Probab=98.90 E-value=1.1e-08 Score=105.02 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=58.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCc------ce---------ecCCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGK------AQ---------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~------~~---------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..+.|+++|.+++|||||+++|++... +. ..-..++|++.....+...
T Consensus 11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~----------------- 73 (396)
T PRK00049 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETE----------------- 73 (396)
T ss_pred CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCC-----------------
Confidence 347899999999999999999995211 00 1114566766544333322
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..++.|+||||.. .+.......+..||++++|+|+.
T Consensus 74 ~~~i~~iDtPG~~-------~f~~~~~~~~~~aD~~llVVDa~ 109 (396)
T PRK00049 74 KRHYAHVDCPGHA-------DYVKNMITGAAQMDGAILVVSAA 109 (396)
T ss_pred CeEEEEEECCCHH-------HHHHHHHhhhccCCEEEEEEECC
Confidence 2579999999973 34445566788999999999975
No 253
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.89 E-value=1.3e-08 Score=99.63 Aligned_cols=64 Identities=16% Similarity=0.225 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecC--------CCCc-cccceEEEEecCCccchhhccccccccccCceEEEE
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAAN--------FPFC-TIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~--------~p~t-T~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (423)
.++|+++|.+|+|||||+|+|.+......+. .+.| +.......+...+. ..++.+|
T Consensus 4 ~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~---------------~~~l~ii 68 (276)
T cd01850 4 QFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGV---------------KLKLTVI 68 (276)
T ss_pred EEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCE---------------EEEEEEE
Confidence 4789999999999999999999655444332 1222 12222222332221 2469999
Q ss_pred ecCCCcCC
Q 014539 127 DIAGLVKG 134 (423)
Q Consensus 127 DtpGl~~~ 134 (423)
||||+...
T Consensus 69 DTpGfgd~ 76 (276)
T cd01850 69 DTPGFGDN 76 (276)
T ss_pred ecCCcccc
Confidence 99999544
No 254
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.89 E-value=4.3e-09 Score=98.90 Aligned_cols=89 Identities=20% Similarity=0.161 Sum_probs=57.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecC-CCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~-~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
++|.|+|.+++||||+.|.|+|...+..+. ...+|..+......+.+ ..+.++||||+....
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g-----------------~~v~VIDTPGl~d~~ 63 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG-----------------RQVTVIDTPGLFDSD 63 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT-----------------EEEEEEE--SSEETT
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecc-----------------eEEEEEeCCCCCCCc
Confidence 479999999999999999999887766552 34567777777766665 569999999996554
Q ss_pred CcccchhhHHhh----hhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLS----HIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~----~ir~aD~il~Vvd~~ 162 (423)
...+...+.... .....|++|+|++..
T Consensus 64 ~~~~~~~~~i~~~l~~~~~g~ha~llVi~~~ 94 (212)
T PF04548_consen 64 GSDEEIIREIKRCLSLCSPGPHAFLLVIPLG 94 (212)
T ss_dssp EEHHHHHHHHHHHHHHTTT-ESEEEEEEETT
T ss_pred ccHHHHHHHHHHHHHhccCCCeEEEEEEecC
Confidence 333323322222 234579999999864
No 255
>PF02824 TGS: TGS domain; InterPro: IPR004095 The TGS domain is present in a number of enzymes, for example, in threonyl-tRNA synthetase (ThrRS), GTPase, and guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (SpoT) []. The TGS domain is also present at the amino terminus of the uridine kinase from the spirochaete Treponema pallidum (but not any other organism, including the related spirochaete Borrelia burgdorferi). TGS is a small domain that consists of ~50 amino acid residues and is predicted to possess a predominantly beta-sheet structure. There is no direct information on the functions of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role []. ; PDB: 1WXQ_A 1NYR_B 1NYQ_B 2KMM_A 1WWT_A 1TKE_A 1TKG_A 1TJE_A 1QF6_A 1TKY_A ....
Probab=98.87 E-value=2.2e-09 Score=80.53 Aligned_cols=59 Identities=22% Similarity=0.236 Sum_probs=50.2
Q ss_pred EEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEE
Q 014539 340 RTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419 (423)
Q Consensus 340 i~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~ 419 (423)
|.+|| .++..+. +++|+|+.|+|..||+++++.|+.|.|++ ++++.+|+++|||+|+|
T Consensus 1 I~v~l-pdG~~~~--~~~g~T~~d~A~~I~~~l~~~~~~A~Vng-------------------~~vdl~~~L~~~d~v~i 58 (60)
T PF02824_consen 1 IRVYL-PDGSIKE--LPEGSTVLDVAYSIHSSLAKRAVAAKVNG-------------------QLVDLDHPLEDGDVVEI 58 (60)
T ss_dssp EEEEE-TTSCEEE--EETTBBHHHHHHHHSHHHHHCEEEEEETT-------------------EEEETTSBB-SSEEEEE
T ss_pred CEEEC-CCCCeee--CCCCCCHHHHHHHHCHHHHhheeEEEEcC-------------------EECCCCCCcCCCCEEEE
Confidence 57888 3344444 99999999999999999999999999886 36999999999999998
Q ss_pred E
Q 014539 420 R 420 (423)
Q Consensus 420 ~ 420 (423)
.
T Consensus 59 i 59 (60)
T PF02824_consen 59 I 59 (60)
T ss_dssp E
T ss_pred E
Confidence 4
No 256
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.83 E-value=2.9e-08 Score=87.20 Aligned_cols=135 Identities=16% Similarity=0.184 Sum_probs=88.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
-||.+||.+++|||||.++|.|.... + .-|.. +.+. =.++||||-.-.
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~----~-~KTq~-----i~~~--------------------~~~IDTPGEyiE-- 49 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR----Y-KKTQA-----IEYY--------------------DNTIDTPGEYIE-- 49 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC----c-Cccce-----eEec--------------------ccEEECChhhee--
Confidence 37999999999999999999954321 1 11111 2121 135999996322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
...+....+....+||+|++|.|++++...
T Consensus 50 -~~~~y~aLi~ta~dad~V~ll~dat~~~~~------------------------------------------------- 79 (143)
T PF10662_consen 50 -NPRFYHALIVTAQDADVVLLLQDATEPRSV------------------------------------------------- 79 (143)
T ss_pred -CHHHHHHHHHHHhhCCEEEEEecCCCCCcc-------------------------------------------------
Confidence 234556667788899999999998643211
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCC-cEEE
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS-GRVT 295 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~-~~v~ 295 (423)
++..++ ...++|++=|++|.| .... +...+..+++++.-|. .++.
T Consensus 80 -------------------~pP~fa-----------~~f~~pvIGVITK~D--l~~~--~~~i~~a~~~L~~aG~~~if~ 125 (143)
T PF10662_consen 80 -------------------FPPGFA-----------SMFNKPVIGVITKID--LPSD--DANIERAKKWLKNAGVKEIFE 125 (143)
T ss_pred -------------------CCchhh-----------cccCCCEEEEEECcc--Cccc--hhhHHHHHHHHHHcCCCCeEE
Confidence 110110 124789999999994 5422 4567777777776664 3789
Q ss_pred echhhhHhhcCC
Q 014539 296 ISAQVEAELTEL 307 (423)
Q Consensus 296 ~Sa~~e~~i~~l 307 (423)
+|+..++.|.+|
T Consensus 126 vS~~~~eGi~eL 137 (143)
T PF10662_consen 126 VSAVTGEGIEEL 137 (143)
T ss_pred EECCCCcCHHHH
Confidence 999988777443
No 257
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=98.80 E-value=3.2e-08 Score=90.45 Aligned_cols=80 Identities=25% Similarity=0.382 Sum_probs=49.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|.|+|.+|+|||+||..|+.+... .-.|...++.+ ..+... ....+.++|+||-.+
T Consensus 4 ~~vlL~Gps~SGKTaLf~~L~~~~~~----~T~tS~e~n~~-~~~~~~--------------~~~~~~lvD~PGH~r--- 61 (181)
T PF09439_consen 4 PTVLLVGPSGSGKTALFSQLVNGKTV----PTVTSMENNIA-YNVNNS--------------KGKKLRLVDIPGHPR--- 61 (181)
T ss_dssp -EEEEE-STTSSHHHHHHHHHHSS-------B---SSEEEE-CCGSST--------------CGTCECEEEETT-HC---
T ss_pred ceEEEEcCCCCCHHHHHHHHhcCCcC----CeeccccCCce-EEeecC--------------CCCEEEEEECCCcHH---
Confidence 46999999999999999999944211 11233334333 222110 124599999999843
Q ss_pred cccchhhHHhhh---hhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSH---IREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~---ir~aD~il~Vvd~~ 162 (423)
+..+++.. +..+.+|++|||++
T Consensus 62 ----lr~~~~~~~~~~~~~k~IIfvvDSs 86 (181)
T PF09439_consen 62 ----LRSKLLDELKYLSNAKGIIFVVDSS 86 (181)
T ss_dssp ----CCHHHHHHHHHHGGEEEEEEEEETT
T ss_pred ----HHHHHHHhhhchhhCCEEEEEEeCc
Confidence 33355554 88999999999975
No 258
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.80 E-value=2.3e-08 Score=103.19 Aligned_cols=102 Identities=23% Similarity=0.212 Sum_probs=58.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC--cceecCCCCccccceEEEEecCC-ccchhhcccccccc---------ccCc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG--KAQAANFPFCTIEPNVGIVAVPD-PRLHVLSGLSKSQK---------AVPA 121 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~--~~~vs~~p~tT~~~~~~~~~~~~-~r~~~l~~~~~~~~---------~~~~ 121 (423)
...++|+++|..++|||||+.+|++.. .....-..+.|++.......... ..+ .....|.... ....
T Consensus 7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 85 (411)
T PRK04000 7 QPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDC-EEPEAYTTEPKCPNCGSETELLR 85 (411)
T ss_pred CCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEeccccccccccccc-Ccccccccccccccccccccccc
Confidence 345889999999999999999998521 11111123455443322211100 000 0000010000 0024
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
++.||||||. +.+...++..+..+|++++|+|+.+
T Consensus 86 ~i~liDtPG~-------~~f~~~~~~~~~~~D~~llVVDa~~ 120 (411)
T PRK04000 86 RVSFVDAPGH-------ETLMATMLSGAALMDGAILVIAANE 120 (411)
T ss_pred EEEEEECCCH-------HHHHHHHHHHHhhCCEEEEEEECCC
Confidence 7999999996 2344567777888999999999863
No 259
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.79 E-value=7.4e-08 Score=103.76 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=55.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceec--------------CCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs--------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
..|+|+|..++|||||+.+|+....+... ...+.|+......+.+.. ..-...+
T Consensus 8 RNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~------------~dg~~~~ 75 (600)
T PRK05433 8 RNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKA------------KDGETYI 75 (600)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEc------------cCCCcEE
Confidence 47999999999999999999842211100 012344443332222210 0001256
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||.... .......++.||++++|+|+++
T Consensus 76 lnLiDTPGh~dF-------~~~v~~sl~~aD~aILVVDas~ 109 (600)
T PRK05433 76 LNLIDTPGHVDF-------SYEVSRSLAACEGALLVVDASQ 109 (600)
T ss_pred EEEEECCCcHHH-------HHHHHHHHHHCCEEEEEEECCC
Confidence 899999999543 2345677899999999999864
No 260
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=98.79 E-value=2.8e-09 Score=105.71 Aligned_cols=88 Identities=22% Similarity=0.250 Sum_probs=67.9
Q ss_pred hhcccccCCcchhhhhhhh-hhhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccch
Q 014539 29 NANLIGVLGITTTSSRRRF-SSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH 107 (423)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~ 107 (423)
.+.+...+|.+.+.+..++ .+-......+.||+||+||+||||++|+|-....|.+++.|+.|.-=+.-.+
T Consensus 279 HAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKVWQYItL-------- 350 (572)
T KOG2423|consen 279 HASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKVWQYITL-------- 350 (572)
T ss_pred ehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcchHHHHHHH--------
Confidence 4667889999998887665 3444455668999999999999999999998899999999998842111100
Q ss_pred hhccccccccccCceEEEEecCCCcCCCC
Q 014539 108 VLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 108 ~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
-..|.|||+||++.+.+
T Consensus 351 ------------mkrIfLIDcPGvVyps~ 367 (572)
T KOG2423|consen 351 ------------MKRIFLIDCPGVVYPSS 367 (572)
T ss_pred ------------HhceeEecCCCccCCCC
Confidence 03499999999998765
No 261
>PRK13796 GTPase YqeH; Provisional
Probab=98.79 E-value=6.6e-09 Score=105.51 Aligned_cols=59 Identities=27% Similarity=0.397 Sum_probs=45.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc-----CcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~-----~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
+.++.+||.||||||||+|+|.+. ..+.+|+.|+||++...-.+ ++ ...++||||
T Consensus 160 ~~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l--~~------------------~~~l~DTPG 219 (365)
T PRK13796 160 GRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPL--DD------------------GSFLYDTPG 219 (365)
T ss_pred CCeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEc--CC------------------CcEEEECCC
Confidence 357999999999999999999843 23458999999998654332 22 268999999
Q ss_pred CcCC
Q 014539 131 LVKG 134 (423)
Q Consensus 131 l~~~ 134 (423)
+...
T Consensus 220 i~~~ 223 (365)
T PRK13796 220 IIHR 223 (365)
T ss_pred cccc
Confidence 9743
No 262
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.76 E-value=9.2e-08 Score=82.46 Aligned_cols=152 Identities=21% Similarity=0.217 Sum_probs=102.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCcc-ccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..+|-.|||.-+||||.|+..+| .+.. .+++|.|- ++.-..++.+.+.. ..+++|||+|..
T Consensus 10 yifkyiiigdmgvgkscllhqft-ekkf-madcphtigvefgtriievsgqk---------------iklqiwdtagqe- 71 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVGKSCLLHQFT-EKKF-MADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQE- 71 (215)
T ss_pred heEEEEEEccccccHHHHHHHHH-HHHH-hhcCCcccceecceeEEEecCcE---------------EEEEEeecccHH-
Confidence 34788999999999999999999 5443 45667542 22333446666644 469999999984
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
.+.....++.|.|-..+.|.|.......
T Consensus 72 ------rfravtrsyyrgaagalmvyditrrsty---------------------------------------------- 99 (215)
T KOG0097|consen 72 ------RFRAVTRSYYRGAAGALMVYDITRRSTY---------------------------------------------- 99 (215)
T ss_pred ------HHHHHHHHHhccccceeEEEEehhhhhh----------------------------------------------
Confidence 3444667889999999999996432110
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
..+.++|.+.+. +| -.+--++++.|+. |+... .+...++.+++++++|..|
T Consensus 100 ---------nhlsswl~dar~-----lt------------npnt~i~lignka--dle~q-rdv~yeeak~faeengl~f 150 (215)
T KOG0097|consen 100 ---------NHLSSWLTDARN-----LT------------NPNTVIFLIGNKA--DLESQ-RDVTYEEAKEFAEENGLMF 150 (215)
T ss_pred ---------hhHHHHHhhhhc-----cC------------CCceEEEEecchh--hhhhc-ccCcHHHHHHHHhhcCeEE
Confidence 111112221111 11 1334566778998 45443 4567788999999999999
Q ss_pred EEechhhhHhhc
Q 014539 294 VTISAQVEAELT 305 (423)
Q Consensus 294 v~~Sa~~e~~i~ 305 (423)
...||+++.++.
T Consensus 151 le~saktg~nve 162 (215)
T KOG0097|consen 151 LEASAKTGQNVE 162 (215)
T ss_pred EEecccccCcHH
Confidence 999999998874
No 263
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.76 E-value=8.1e-09 Score=104.69 Aligned_cols=59 Identities=24% Similarity=0.359 Sum_probs=47.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC-----cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG-----KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~-----~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
+.+|.+||.||||||||+|+|++.. .+.+|++|+||++.+...+ + ..+.++||||
T Consensus 154 ~~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~--~------------------~~~~l~DtPG 213 (360)
T TIGR03597 154 KKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPL--D------------------DGHSLYDTPG 213 (360)
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEe--C------------------CCCEEEECCC
Confidence 3689999999999999999999632 3678999999988764432 1 2378999999
Q ss_pred CcCC
Q 014539 131 LVKG 134 (423)
Q Consensus 131 l~~~ 134 (423)
+...
T Consensus 214 ~~~~ 217 (360)
T TIGR03597 214 IINS 217 (360)
T ss_pred CCCh
Confidence 9754
No 264
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.74 E-value=3.6e-08 Score=95.99 Aligned_cols=96 Identities=17% Similarity=0.147 Sum_probs=53.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCccee--cC------CCCccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQA--AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~v--s~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
..|+|+|.+|+|||||+|+|+....+.. +. ...++.|.... .-.|--.+..-..+-.+...++.+|||
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~----e~~rg~si~~~~~~~~~~~~~i~liDT 78 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEI----EKQRGISVTSSVMQFEYRDCVINLLDT 78 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHH----HHhCCCCeEEEEEEEeeCCEEEEEEEC
Confidence 3599999999999999999984322211 00 01111111000 000000000000000112367999999
Q ss_pred CCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 129 pGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
||... +.......++.+|++++|+|+++
T Consensus 79 PG~~d-------f~~~~~~~l~~aD~~IlVvda~~ 106 (267)
T cd04169 79 PGHED-------FSEDTYRTLTAVDSAVMVIDAAK 106 (267)
T ss_pred CCchH-------HHHHHHHHHHHCCEEEEEEECCC
Confidence 99743 22346677899999999999864
No 265
>KOG2484 consensus GTPase [General function prediction only]
Probab=98.73 E-value=8e-09 Score=102.91 Aligned_cols=71 Identities=25% Similarity=0.449 Sum_probs=56.4
Q ss_pred hhhhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEE
Q 014539 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (423)
Q Consensus 47 ~~~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (423)
+.+........+|||||+|||||||++|+|.....+.+++.|+.|+.-..-.+ ...|.|+
T Consensus 243 y~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L--------------------dk~i~ll 302 (435)
T KOG2484|consen 243 YCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL--------------------DKKIRLL 302 (435)
T ss_pred cccccccCcceEeeeecCCCCChhHHHHHHHHhccccCCCCccchhhhhheec--------------------cCCceec
Confidence 33444456679999999999999999999998888999999999976543322 1469999
Q ss_pred ecCCCcCCCCc
Q 014539 127 DIAGLVKGASQ 137 (423)
Q Consensus 127 DtpGl~~~~~~ 137 (423)
|.||++.....
T Consensus 303 DsPgiv~~~~~ 313 (435)
T KOG2484|consen 303 DSPGIVPPSID 313 (435)
T ss_pred cCCceeecCCC
Confidence 99999876654
No 266
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=98.72 E-value=1e-08 Score=88.97 Aligned_cols=84 Identities=24% Similarity=0.291 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..+.+.+||..|+|||||.|.+..+. -+.+...|+-.+...++-++ ..+.+||.||....
T Consensus 19 ~emel~lvGLq~sGKtt~Vn~ia~g~---~~edmiptvGfnmrk~tkgn-----------------vtiklwD~gGq~rf 78 (186)
T KOG0075|consen 19 EEMELSLVGLQNSGKTTLVNVIARGQ---YLEDMIPTVGFNMRKVTKGN-----------------VTIKLWDLGGQPRF 78 (186)
T ss_pred heeeEEEEeeccCCcceEEEEEeecc---chhhhcccccceeEEeccCc-----------------eEEEEEecCCCccH
Confidence 34789999999999999999987322 22344556666666666555 67999999999654
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
.+ .+-.+.|.+++|++|||+++++
T Consensus 79 rs-------mWerycR~v~aivY~VDaad~~ 102 (186)
T KOG0075|consen 79 RS-------MWERYCRGVSAIVYVVDAADPD 102 (186)
T ss_pred HH-------HHHHHhhcCcEEEEEeecCCcc
Confidence 43 6678899999999999998643
No 267
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=98.71 E-value=4e-08 Score=93.17 Aligned_cols=91 Identities=15% Similarity=0.005 Sum_probs=59.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC-cce-ecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG-KAQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~-~~~-vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
.-|+|+|.|++|||||+|.|+|.. ... ....+.||+.......+.+.. ...+++++||||+...
T Consensus 8 ~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~--------------~~~~v~~lDteG~~~~ 73 (224)
T cd01851 8 AVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLG--------------KEHAVLLLDTEGTDGR 73 (224)
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCC--------------CcceEEEEecCCcCcc
Confidence 469999999999999999999661 443 445578887655555444310 1256999999999643
Q ss_pred CCcccchhhHHhhhhhh--cceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIRE--VDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~--aD~il~Vvd~~ 162 (423)
.. +.......+..+.. +|++|+.++..
T Consensus 74 ~~-~~~~~~~~~~~l~~llss~~i~n~~~~ 102 (224)
T cd01851 74 ER-GEFEDDARLFALATLLSSVLIYNSWET 102 (224)
T ss_pred cc-CchhhhhHHHHHHHHHhCEEEEeccCc
Confidence 22 11112223333344 89999998863
No 268
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.71 E-value=2.2e-08 Score=93.48 Aligned_cols=90 Identities=19% Similarity=0.156 Sum_probs=55.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.||.++|.++||||||++++++ ........|....+.....+.+++.. ...+ ...+.+|||+|....
T Consensus 1 vKIvlvGd~gVGKTSLi~~~~~-~~f~~~~~~Tig~~~~~k~~~~~~~~--------~~~~--~~~l~IwDtaG~e~~-- 67 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICK-NQVLGRPSWTVGCSVDVKHHTYKEGT--------PEEK--TFFVELWDVGGSESV-- 67 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHc-CCCCCCCCcceeeeEEEEEEEEcCCC--------CCCc--EEEEEEEecCCchhH--
Confidence 4899999999999999999994 33322222222111222223332100 0000 145899999998433
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.......++++|++++|+|+++.
T Consensus 68 -----~~l~~~~yr~ad~iIlVyDvtn~ 90 (202)
T cd04102 68 -----KSTRAVFYNQVNGIILVHDLTNR 90 (202)
T ss_pred -----HHHHHHHhCcCCEEEEEEECcCh
Confidence 22344568899999999998654
No 269
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=98.71 E-value=1.7e-07 Score=87.16 Aligned_cols=151 Identities=21% Similarity=0.191 Sum_probs=97.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.+|||||+|...+. .... +..|..|.-+.....+.+++.. ..+.++||+|..+..
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~-~~~f-~~~y~ptied~y~k~~~v~~~~---------------~~l~ilDt~g~~~~~ 65 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFL-TGRF-VEDYDPTIEDSYRKELTVDGEV---------------CMLEILDTAGQEEFS 65 (196)
T ss_pred ceEEEEECCCCCCcchheeeec-cccc-ccccCCCccccceEEEEECCEE---------------EEEEEEcCCCcccCh
Confidence 3689999999999999999998 4443 3345445445566666666533 568899999954432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .--.+++.+|+.+.|+++.+..+ ++.
T Consensus 66 ~-------~~~~~~~~~~gF~lVysitd~~S-------------F~~--------------------------------- 92 (196)
T KOG0395|consen 66 A-------MRDLYIRNGDGFLLVYSITDRSS-------------FEE--------------------------------- 92 (196)
T ss_pred H-------HHHHhhccCcEEEEEEECCCHHH-------------HHH---------------------------------
Confidence 2 23355888999999999753221 111
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
...+++.|.+ . .....-|+++|.||.| +... .....++.+.++...+.+++.
T Consensus 93 --~~~l~~~I~r-~----------------------~~~~~~PivlVGNK~D--l~~~-R~V~~eeg~~la~~~~~~f~E 144 (196)
T KOG0395|consen 93 --AKQLREQILR-V----------------------KGRDDVPIILVGNKCD--LERE-RQVSEEEGKALARSWGCAFIE 144 (196)
T ss_pred --HHHHHHHHHH-h----------------------hCcCCCCEEEEEEccc--chhc-cccCHHHHHHHHHhcCCcEEE
Confidence 1111111100 0 0013469999999994 5432 344566677777777888999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+...++
T Consensus 145 ~Sak~~~~v 153 (196)
T KOG0395|consen 145 TSAKLNYNV 153 (196)
T ss_pred eeccCCcCH
Confidence 999986554
No 270
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=98.69 E-value=1.5e-08 Score=88.91 Aligned_cols=153 Identities=21% Similarity=0.198 Sum_probs=100.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCcccc--ceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIE--PNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~--~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..+||+++|.--||||||.-+.. ..... ...-+|+. .....+.+.|.| +++-+|||+|..
T Consensus 12 ~~FK~VLLGEGCVGKtSLVLRy~-EnkFn--~kHlsTlQASF~~kk~n~ed~r---------------a~L~IWDTAGQE 73 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVGKTSLVLRYV-ENKFN--CKHLSTLQASFQNKKVNVEDCR---------------ADLHIWDTAGQE 73 (218)
T ss_pred eeeEEEEEcCCccchhHHHHHHH-Hhhcc--hhhHHHHHHHHhhcccccccce---------------eeeeeeeccchH
Confidence 35899999999999999998888 44332 12222322 123345666644 679999999997
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
+....| .-++|.+|..++|.|..+.+ .+++-.+|+..
T Consensus 74 rfHALG-------PIYYRgSnGalLVyDITDrd----------------------------SFqKVKnWV~E-------- 110 (218)
T KOG0088|consen 74 RFHALG-------PIYYRGSNGALLVYDITDRD----------------------------SFQKVKNWVLE-------- 110 (218)
T ss_pred hhhccC-------ceEEeCCCceEEEEeccchH----------------------------HHHHHHHHHHH--------
Confidence 654322 34679999999999975432 12222222111
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 292 (423)
+... +-+...+++|.||. |+.+. .....++...|++..|..
T Consensus 111 ------------lr~m------------------------lGnei~l~IVGNKi--DLEee-R~Vt~qeAe~YAesvGA~ 151 (218)
T KOG0088|consen 111 ------------LRTM------------------------LGNEIELLIVGNKI--DLEEE-RQVTRQEAEAYAESVGAL 151 (218)
T ss_pred ------------HHHH------------------------hCCeeEEEEecCcc--cHHHh-hhhhHHHHHHHHHhhchh
Confidence 1111 12556788999999 45443 455677888899888999
Q ss_pred EEEechhhhHhhcCC
Q 014539 293 RVTISAQVEAELTEL 307 (423)
Q Consensus 293 ~v~~Sa~~e~~i~~l 307 (423)
++.+||+-...|.+|
T Consensus 152 y~eTSAk~N~Gi~el 166 (218)
T KOG0088|consen 152 YMETSAKDNVGISEL 166 (218)
T ss_pred heecccccccCHHHH
Confidence 999999987776543
No 271
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=98.68 E-value=8.9e-08 Score=99.76 Aligned_cols=85 Identities=15% Similarity=0.136 Sum_probs=56.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce------------------------ec------CCCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AA------NFPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~------------------------vs------~~p~tT~~~~~~~~~~~~~ 104 (423)
+.+.|+++|..++|||||+.+|+...... +. ...+.|++.....+...
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~-- 83 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETP-- 83 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccC--
Confidence 34789999999999999999998311110 00 11234444433333322
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.|+||||.. .+.......+..||++++|||+.+
T Consensus 84 ---------------~~~i~lIDtPGh~-------~f~~~~~~g~~~aD~ailVVda~~ 120 (446)
T PTZ00141 84 ---------------KYYFTIIDAPGHR-------DFIKNMITGTSQADVAILVVASTA 120 (446)
T ss_pred ---------------CeEEEEEECCChH-------HHHHHHHHhhhhcCEEEEEEEcCC
Confidence 2569999999963 344566777899999999999864
No 272
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=98.68 E-value=2.4e-08 Score=85.28 Aligned_cols=80 Identities=21% Similarity=0.263 Sum_probs=57.2
Q ss_pred EEecCCCCccHHHHHHhhcCcceecCCC-CccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCccc
Q 014539 61 IVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGE 139 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~ 139 (423)
++|.+.+|||.|+-+.- .......++- ...+|.....+.+++.. ..+++|||+|+.+.++
T Consensus 2 llgds~~gktcllir~k-dgafl~~~fistvgid~rnkli~~~~~k---------------vklqiwdtagqerfrs--- 62 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFK-DGAFLAGNFISTVGIDFRNKLIDMDDKK---------------VKLQIWDTAGQERFRS--- 62 (192)
T ss_pred ccccCccCceEEEEEec-cCceecCceeeeeeeccccceeccCCcE---------------EEEEEeeccchHHHhh---
Confidence 68999999999988776 3333333432 23344444556666644 5699999999965554
Q ss_pred chhhHHhhhhhhcceEEEEEeccC
Q 014539 140 GLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 140 ~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..-++.|+||+++++.|..+
T Consensus 63 ----vt~ayyrda~allllydian 82 (192)
T KOG0083|consen 63 ----VTHAYYRDADALLLLYDIAN 82 (192)
T ss_pred ----hhHhhhcccceeeeeeeccc
Confidence 66788999999999999643
No 273
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.66 E-value=6e-07 Score=85.91 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=61.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE-----------ecCCccchh---hc-----------
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV-----------AVPDPRLHV---LS----------- 110 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~-----------~~~~~r~~~---l~----------- 110 (423)
.++|++||.+++||||++++|+|...... ..-.+|+.|..-.+ ..++..+.. +.
T Consensus 26 ~p~i~vvG~~~~GKSt~l~~i~g~~~~~~-~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 26 LPQIAVVGGQSAGKSSVLENFVGRDFLPR-GSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCeEEEEcCCCccHHHHHHHHhCCCcccc-CCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhc
Confidence 46899999999999999999996542221 22244554444322 222211110 00
Q ss_pred -------------cccccccccCceEEEEecCCCcCCCCcc------cchhhHHhhhhhh-cceEEEEEecc
Q 014539 111 -------------GLSKSQKAVPASVEFVDIAGLVKGASQG------EGLGNKFLSHIRE-VDSILQVVRCF 162 (423)
Q Consensus 111 -------------~~~~~~~~~~~~i~lvDtpGl~~~~~~~------~~l~~~~l~~ir~-aD~il~Vvd~~ 162 (423)
+++.|. -..+.|+||||+......+ ..+.+++..++++ .++|++|+|+.
T Consensus 105 ~~~~~~s~~~i~l~i~~p~---~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~ 173 (240)
T smart00053 105 GTNKGISPVPINLRVYSPH---VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPAN 173 (240)
T ss_pred CCCCcccCcceEEEEeCCC---CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECC
Confidence 011121 1469999999997542211 2233566778884 56999999975
No 274
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.65 E-value=4e-08 Score=87.39 Aligned_cols=57 Identities=30% Similarity=0.486 Sum_probs=44.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
...++.++|.||+|||||+|+|.+.....+++.+++|.+.. .+..+ ..+.+|||||+
T Consensus 100 ~~~~~~~ig~~~~Gkssl~~~l~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~~~DtpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQ--LVKIT------------------SKIYLLDTPGV 156 (156)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCccccCCCCCeeeeeE--EEEcC------------------CCEEEEECcCC
Confidence 34789999999999999999999777777888888886543 22222 24899999996
No 275
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.60 E-value=3.6e-07 Score=86.66 Aligned_cols=21 Identities=38% Similarity=0.642 Sum_probs=19.6
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+|+++|.+++|||||+++|+.
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~ 21 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQ 21 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999999993
No 276
>PRK12289 GTPase RsgA; Reviewed
Probab=98.58 E-value=4.7e-08 Score=98.58 Aligned_cols=85 Identities=19% Similarity=0.277 Sum_probs=55.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCC-------ccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-------tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
.++|+|.||||||||+|+|.+.....+++.+. ||++.. .+.+++ ...|+||||
T Consensus 174 i~v~iG~SgVGKSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~--l~~l~~------------------g~~liDTPG 233 (352)
T PRK12289 174 ITVVAGPSGVGKSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVE--LFELPN------------------GGLLADTPG 233 (352)
T ss_pred eEEEEeCCCCCHHHHHHHHcCccccccccccCCCCCCCCcCceeE--EEECCC------------------CcEEEeCCC
Confidence 48999999999999999999877777888887 776653 333332 247999999
Q ss_pred CcCCCCc--ccchhhHHhhhhhhc--ceEEEEEeccC
Q 014539 131 LVKGASQ--GEGLGNKFLSHIREV--DSILQVVRCFE 163 (423)
Q Consensus 131 l~~~~~~--~~~l~~~~l~~ir~a--D~il~Vvd~~~ 163 (423)
+....-. .+.+...|... +.. -.=+-.-||.+
T Consensus 234 ~~~~~l~~~~~~l~~~F~e~-~~~~~~~~CrF~dC~H 269 (352)
T PRK12289 234 FNQPDLDCSPRELAHYFPEA-RQRLAQGNCQFNDCLH 269 (352)
T ss_pred ccccccccCHHHHHhhHHHH-HHhHhhCceEccCCcc
Confidence 9654431 23444444332 211 12235567754
No 277
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.57 E-value=1.3e-07 Score=88.78 Aligned_cols=87 Identities=21% Similarity=0.264 Sum_probs=53.5
Q ss_pred EEEEEecCCCCccHHHHHHhhcCccee---cCCC---------------CccccceEEEEecCCccchhhcccccccccc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQA---ANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~v---s~~p---------------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
+|+++|.+++|||||+++|++...... .... +.|.......+.+.+ ..-.
T Consensus 2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~------------~~~~ 69 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPD------------SKGK 69 (213)
T ss_pred cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEc------------CCCC
Confidence 589999999999999999995433221 0000 111111111111110 0011
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.+|||||.... .......++.+|++++|+|+.+
T Consensus 70 ~~~i~iiDtpG~~~f-------~~~~~~~~~~aD~~llVvD~~~ 106 (213)
T cd04167 70 SYLFNIIDTPGHVNF-------MDEVAAALRLSDGVVLVVDVVE 106 (213)
T ss_pred EEEEEEEECCCCcch-------HHHHHHHHHhCCEEEEEEECCC
Confidence 256899999998543 2356778899999999999853
No 278
>PRK12288 GTPase RsgA; Reviewed
Probab=98.56 E-value=5.6e-08 Score=97.97 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=52.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCC-------ccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-------tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
.++|+|.||||||||+|+|.+.....+++.+. ||+....- .++. ...++||||
T Consensus 207 i~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~--~l~~------------------~~~liDTPG 266 (347)
T PRK12288 207 ISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLY--HFPH------------------GGDLIDSPG 266 (347)
T ss_pred CEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEEE--EecC------------------CCEEEECCC
Confidence 48999999999999999999877777777664 45443322 3322 246999999
Q ss_pred CcCCCCc---ccchhhHHhh---hhhhcceEEEEEeccC
Q 014539 131 LVKGASQ---GEGLGNKFLS---HIREVDSILQVVRCFE 163 (423)
Q Consensus 131 l~~~~~~---~~~l~~~~l~---~ir~aD~il~Vvd~~~ 163 (423)
+....-. .+++...|.. ....| -.-||.+
T Consensus 267 ir~~~l~~~~~~~l~~~F~ei~~~~~~C----rF~dC~H 301 (347)
T PRK12288 267 VREFGLWHLEPEQVTQGFVEFRDYLGTC----KFRDCKH 301 (347)
T ss_pred CCcccCCCCCHHHHHHhhHHHHHHhcCC----CCCCCcc
Confidence 9654321 2345555543 33333 4556654
No 279
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.54 E-value=1e-06 Score=79.65 Aligned_cols=86 Identities=13% Similarity=0.145 Sum_probs=59.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcc-------eecCCC--CccccceEEEEecCCccchhhccccccccccCceEEEE
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-------QAANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFV 126 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~-------~vs~~p--~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lv 126 (423)
..||+++|.-++||||++.+++..... .++... .||...-.|.+.+.+ ...+.|+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~----------------~~~v~Lf 73 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDE----------------DTGVHLF 73 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcC----------------cceEEEe
Confidence 479999999999999999999943321 122222 356555556665544 2469999
Q ss_pred ecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 127 DIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 127 DtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
||||..+..- .+--..+.++.++++||++.+
T Consensus 74 gtPGq~RF~f-------m~~~l~~ga~gaivlVDss~~ 104 (187)
T COG2229 74 GTPGQERFKF-------MWEILSRGAVGAIVLVDSSRP 104 (187)
T ss_pred cCCCcHHHHH-------HHHHHhCCcceEEEEEecCCC
Confidence 9999854321 233456889999999998643
No 280
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.53 E-value=2.3e-07 Score=86.55 Aligned_cols=83 Identities=22% Similarity=0.209 Sum_probs=54.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+||+++|.+|||||||+|+|.+.. ......| |......+....+..+ ..++.+|||||+..
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~-~~~~~~~-t~~~~~~~~~~~~~~~--------------~~~~~~~Dt~gq~~--- 66 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDE-FPEGYPP-TIGNLDPAKTIEPYRR--------------NIKLQLWDTAGQEE--- 66 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCc-CcccCCC-ceeeeeEEEEEEeCCC--------------EEEEEeecCCCHHH---
Confidence 799999999999999999999443 3222222 2122222222221110 14589999999943
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+......+.+.++++++|+|..
T Consensus 67 ----~~~~~~~y~~~~~~~l~~~d~~ 88 (219)
T COG1100 67 ----YRSLRPEYYRGANGILIVYDST 88 (219)
T ss_pred ----HHHHHHHHhcCCCEEEEEEecc
Confidence 3335567789999999999964
No 281
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=98.50 E-value=1.2e-07 Score=91.12 Aligned_cols=58 Identities=22% Similarity=0.174 Sum_probs=41.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCC-------CccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
..++++|.||||||||+|+|.+.....+++.+ +||++...-.+ .+ ..++|||
T Consensus 121 ~~~~~~G~sgvGKStLiN~L~~~~~~~t~~i~~~~~~G~hTT~~~~l~~l--~~-------------------~~liDtP 179 (245)
T TIGR00157 121 RISVFAGQSGVGKSSLINALDPSVKQQVNDISSKLGLGKHTTTHVELFHF--HG-------------------GLIADTP 179 (245)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhhhccccceeccCCCCCCcCCceEEEEc--CC-------------------cEEEeCC
Confidence 47899999999999999999976555444433 36766544333 22 4799999
Q ss_pred CCcCCC
Q 014539 130 GLVKGA 135 (423)
Q Consensus 130 Gl~~~~ 135 (423)
|+....
T Consensus 180 G~~~~~ 185 (245)
T TIGR00157 180 GFNEFG 185 (245)
T ss_pred CccccC
Confidence 996543
No 282
>PLN00043 elongation factor 1-alpha; Provisional
Probab=98.49 E-value=6.7e-07 Score=93.23 Aligned_cols=84 Identities=12% Similarity=0.099 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce--------------e----------------cCCCCccccceEEEEecCCcc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ--------------A----------------ANFPFCTIEPNVGIVAVPDPR 105 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~--------------v----------------s~~p~tT~~~~~~~~~~~~~r 105 (423)
.+.|+++|..++|||||.-+|+-..... . ...-+.|++.....+...
T Consensus 7 ~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~--- 83 (447)
T PLN00043 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETT--- 83 (447)
T ss_pred eEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCC---
Confidence 4789999999999999999887211100 0 001123333222222211
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.|+||||.. .+.......++.||+.++|+|+.+
T Consensus 84 --------------~~~i~liDtPGh~-------df~~~~~~g~~~aD~aIlVVda~~ 120 (447)
T PLN00043 84 --------------KYYCTVIDAPGHR-------DFIKNMITGTSQADCAVLIIDSTT 120 (447)
T ss_pred --------------CEEEEEEECCCHH-------HHHHHHHhhhhhccEEEEEEEccc
Confidence 2569999999973 334456677899999999999864
No 283
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=98.48 E-value=2.1e-07 Score=90.52 Aligned_cols=68 Identities=25% Similarity=0.370 Sum_probs=52.1
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhh-----cCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEe
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVE-----NGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVD 127 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg-----~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvD 127 (423)
..+...|.+||.||+|||||+|++-. .+.+.+++.|+.|+..... +.+-+. ..+.++|
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~-iri~~r----------------p~vy~iD 202 (335)
T KOG2485|consen 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSER-IRISHR----------------PPVYLID 202 (335)
T ss_pred cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhh-eEeccC----------------CceEEec
Confidence 45678999999999999999999874 3457899999999865443 333221 2389999
Q ss_pred cCCCcCCCCc
Q 014539 128 IAGLVKGASQ 137 (423)
Q Consensus 128 tpGl~~~~~~ 137 (423)
|||+..+...
T Consensus 203 TPGil~P~I~ 212 (335)
T KOG2485|consen 203 TPGILVPSIV 212 (335)
T ss_pred CCCcCCCCCC
Confidence 9999877654
No 284
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.47 E-value=4.5e-07 Score=85.94 Aligned_cols=92 Identities=17% Similarity=0.190 Sum_probs=54.9
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCC---------------ccccceEEEEecCCccchhhccccccccccCce
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPF---------------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~---------------tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
.|+++|.+++|||||+++|+...........+ .|+......+.+...... .+ +-...+
T Consensus 2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~------~~-~~~~~~ 74 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEED------KA-DGNEYL 74 (222)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCccc------cc-CCCceE
Confidence 58999999999999999998533221111111 122211111111100000 00 001357
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||.... .......++.||++++|+|+.+
T Consensus 75 i~iiDTPG~~~f-------~~~~~~~l~~aD~~ilVvD~~~ 108 (222)
T cd01885 75 INLIDSPGHVDF-------SSEVTAALRLCDGALVVVDAVE 108 (222)
T ss_pred EEEECCCCcccc-------HHHHHHHHHhcCeeEEEEECCC
Confidence 899999998643 3467788999999999999864
No 285
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.43 E-value=1.7e-07 Score=94.55 Aligned_cols=86 Identities=20% Similarity=0.244 Sum_probs=49.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCc----ceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK----AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~----~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
...+.|||+|.+|+|||||+|+|-|-.. +......-||.++....-+ . ...+.|||.|
T Consensus 33 ~~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p--~----------------~pnv~lWDlP 94 (376)
T PF05049_consen 33 NAPLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP--K----------------FPNVTLWDLP 94 (376)
T ss_dssp H--EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S--S-----------------TTEEEEEE-
T ss_pred cCceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC--C----------------CCCCeEEeCC
Confidence 3458999999999999999999986211 2211223466666555432 1 1349999999
Q ss_pred CCcCCCCcccchhhHHhh--hhhhcceEEEEEec
Q 014539 130 GLVKGASQGEGLGNKFLS--HIREVDSILQVVRC 161 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~--~ir~aD~il~Vvd~ 161 (423)
|+-..... .+.++. .+...|.+|+|.+.
T Consensus 95 G~gt~~f~----~~~Yl~~~~~~~yD~fiii~s~ 124 (376)
T PF05049_consen 95 GIGTPNFP----PEEYLKEVKFYRYDFFIIISSE 124 (376)
T ss_dssp -GGGSS------HHHHHHHTTGGG-SEEEEEESS
T ss_pred CCCCCCCC----HHHHHHHccccccCEEEEEeCC
Confidence 99543322 233443 36788998888763
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=98.42 E-value=8.4e-07 Score=84.18 Aligned_cols=79 Identities=23% Similarity=0.328 Sum_probs=52.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..+..|+++|.||+|||||+|+|.+... .++.....|.+.+ ..+ ...++.++||||..
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~-------~~~~~~~~g~i~i-----------~~~---~~~~i~~vDtPg~~- 94 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYT-------KQNISDIKGPITV-----------VTG---KKRRLTFIECPNDI- 94 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcc-------cCccccccccEEE-----------Eec---CCceEEEEeCCchH-
Confidence 3456799999999999999999995311 1122122221110 000 02569999999853
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+..++.+|++++|+|++.
T Consensus 95 ---------~~~l~~ak~aDvVllviDa~~ 115 (225)
T cd01882 95 ---------NAMIDIAKVADLVLLLIDASF 115 (225)
T ss_pred ---------HHHHHHHHhcCEEEEEEecCc
Confidence 356677899999999999853
No 287
>PRK04004 translation initiation factor IF-2; Validated
Probab=98.40 E-value=6e-07 Score=96.50 Aligned_cols=97 Identities=24% Similarity=0.167 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCC-ccccceEEEEecCCccchhhcc-ccc--cccccCceEEEEecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSG-LSK--SQKAVPASVEFVDIAGL 131 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-tT~~~~~~~~~~~~~r~~~l~~-~~~--~~~~~~~~i~lvDtpGl 131 (423)
++.|+++|.+|+|||||+|+|++... ++..|+ .|.+. |...++......... ... +.++.-..+.||||||.
T Consensus 6 ~p~V~i~Gh~~~GKTSLl~~l~~~~v--~~~~~g~itq~i--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~ 81 (586)
T PRK04004 6 QPIVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHI--GATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGH 81 (586)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccc--ccCCCCceEEee--ceeeccccccccccceeccccccccccCCEEEEECCCh
Confidence 46899999999999999999995432 233332 22221 111111100000000 000 00000013789999998
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... .......++.+|++++|+|+.+
T Consensus 82 e~f-------~~~~~~~~~~aD~~IlVvDa~~ 106 (586)
T PRK04004 82 EAF-------TNLRKRGGALADIAILVVDINE 106 (586)
T ss_pred HHH-------HHHHHHhHhhCCEEEEEEECCC
Confidence 433 2233356788999999999976
No 288
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.38 E-value=2.7e-06 Score=78.64 Aligned_cols=78 Identities=28% Similarity=0.444 Sum_probs=60.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
..|-++|+.++|||+||-.|+ ... -.--+|.++||.+...+++ ..+.++|.||-.
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~-~gs---~~~TvtSiepn~a~~r~gs-----------------~~~~LVD~PGH~---- 93 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLI-TGS---HRGTVTSIEPNEATYRLGS-----------------ENVTLVDLPGHS---- 93 (238)
T ss_pred CcEEEEecCCCCceeeeeehh-cCC---ccCeeeeeccceeeEeecC-----------------cceEEEeCCCcH----
Confidence 579999999999999999998 331 1234677889999988877 338999999973
Q ss_pred cccchhhHHhhhhh---hcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIR---EVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir---~aD~il~Vvd~~ 162 (423)
.+..+++..+. .+-+|++|||+.
T Consensus 94 ---rlR~kl~e~~~~~~~akaiVFVVDSa 119 (238)
T KOG0090|consen 94 ---RLRRKLLEYLKHNYSAKAIVFVVDSA 119 (238)
T ss_pred ---HHHHHHHHHccccccceeEEEEEecc
Confidence 34445555555 799999999964
No 289
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=1.3e-06 Score=78.25 Aligned_cols=85 Identities=24% Similarity=0.310 Sum_probs=62.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc----ceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK----AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~----~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
.+.|.|+|.-|+|||||+-++-.... ..--..-.+|.--|.|.+.+.. ..+.|||.-|.
T Consensus 17 ~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~~-----------------~~l~fwdlgGQ 79 (197)
T KOG0076|consen 17 DYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVCN-----------------APLSFWDLGGQ 79 (197)
T ss_pred hhhheeeccccCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeecc-----------------ceeEEEEcCCh
Confidence 47899999999999999988862111 0111223567777888877765 55999999998
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
+.+...+-.++..|++|++|+|+.+.
T Consensus 80 -------e~lrSlw~~yY~~~H~ii~viDa~~~ 105 (197)
T KOG0076|consen 80 -------ESLRSLWKKYYWLAHGIIYVIDATDR 105 (197)
T ss_pred -------HHHHHHHHHHHHHhceeEEeecCCCH
Confidence 33444566788999999999998643
No 290
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.36 E-value=1.2e-06 Score=93.16 Aligned_cols=84 Identities=18% Similarity=0.243 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh--cCcceecCC------CCcccc-------------ceEEEEecCCccchhhccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANF------PFCTIE-------------PNVGIVAVPDPRLHVLSGLSK 114 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg--~~~~~vs~~------p~tT~~-------------~~~~~~~~~~~r~~~l~~~~~ 114 (423)
...|+|||.+|+|||||+++|.- +.....+.. ..++.| .....+...
T Consensus 11 ~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~------------ 78 (527)
T TIGR00503 11 RRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYR------------ 78 (527)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeC------------
Confidence 35899999999999999999862 111111110 111111 111112221
Q ss_pred cccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 115 ~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..++.||||||.. .+.......++.||++++|+|+.+
T Consensus 79 -----~~~inliDTPG~~-------df~~~~~~~l~~aD~aIlVvDa~~ 115 (527)
T TIGR00503 79 -----DCLVNLLDTPGHE-------DFSEDTYRTLTAVDNCLMVIDAAK 115 (527)
T ss_pred -----CeEEEEEECCChh-------hHHHHHHHHHHhCCEEEEEEECCC
Confidence 3679999999984 233456778899999999999865
No 291
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.36 E-value=1.4e-06 Score=90.99 Aligned_cols=101 Identities=18% Similarity=0.177 Sum_probs=57.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce--ecCCCCccccceEEEE---------------ecCCccc-hhhccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIV---------------AVPDPRL-HVLSGLSKSQ 116 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~--vs~~p~tT~~~~~~~~---------------~~~~~r~-~~l~~~~~~~ 116 (423)
..+.||++|.-..|||||+.+|||..... ..-.-+.|++.-.... ..++..- +..++.....
T Consensus 33 ~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 33 ATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred CcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 34789999999999999999999643221 1111233333111100 0110000 0000000000
Q ss_pred cccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++.|+||||. +.+....+..+..+|++++|||+.
T Consensus 113 ~~~~~~i~~IDtPGH-------~~fi~~m~~g~~~~D~alLVVda~ 151 (460)
T PTZ00327 113 MTLKRHVSFVDCPGH-------DILMATMLNGAAVMDAALLLIAAN 151 (460)
T ss_pred ccccceEeeeeCCCH-------HHHHHHHHHHHhhCCEEEEEEECC
Confidence 111246899999995 345556677788999999999985
No 292
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.35 E-value=1.3e-06 Score=92.81 Aligned_cols=84 Identities=18% Similarity=0.275 Sum_probs=53.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh--cCcceecCCC------Cc-------------cccceEEEEecCCccchhhccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE--NGKAQAANFP------FC-------------TIEPNVGIVAVPDPRLHVLSGLSK 114 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg--~~~~~vs~~p------~t-------------T~~~~~~~~~~~~~r~~~l~~~~~ 114 (423)
...|+|+|.+|+|||||+++|+- +.....+... .+ |+......+.+.
T Consensus 10 ~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~------------ 77 (526)
T PRK00741 10 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYR------------ 77 (526)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEEC------------
Confidence 35799999999999999999962 2111111111 11 111111112221
Q ss_pred cccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 115 ~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.++.+|||||... +.......++.+|++++|+|+.+
T Consensus 78 -----~~~inliDTPG~~d-------f~~~~~~~l~~aD~aIlVvDa~~ 114 (526)
T PRK00741 78 -----DCLINLLDTPGHED-------FSEDTYRTLTAVDSALMVIDAAK 114 (526)
T ss_pred -----CEEEEEEECCCchh-------hHHHHHHHHHHCCEEEEEEecCC
Confidence 36799999999843 23356777899999999999864
No 293
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.34 E-value=5.7e-07 Score=81.26 Aligned_cols=81 Identities=22% Similarity=0.239 Sum_probs=62.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|.++|+-||||||++..|--++...+ . -|+-.|...+.+.+ ..+.+||.-|..+-
T Consensus 16 ~e~~IlmlGLD~AGKTTILykLk~~E~vtt--v--PTiGfnVE~v~ykn-----------------~~f~vWDvGGq~k~ 74 (181)
T KOG0070|consen 16 KEMRILMVGLDAAGKTTILYKLKLGEIVTT--V--PTIGFNVETVEYKN-----------------ISFTVWDVGGQEKL 74 (181)
T ss_pred ceEEEEEEeccCCCceeeeEeeccCCcccC--C--CccccceeEEEEcc-----------------eEEEEEecCCCccc
Confidence 447999999999999999999973433322 3 35666777777765 66999999999544
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
++ .+..+.++.+++|+|||.++
T Consensus 75 R~-------lW~~Y~~~t~~lIfVvDS~D 96 (181)
T KOG0070|consen 75 RP-------LWKHYFQNTQGLIFVVDSSD 96 (181)
T ss_pred cc-------chhhhccCCcEEEEEEeCCc
Confidence 43 56778999999999999764
No 294
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.32 E-value=1.5e-06 Score=82.73 Aligned_cols=87 Identities=11% Similarity=0.045 Sum_probs=56.4
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||.++|+.++||||..+.+.++-.+.-..+-..|.++....+...+ ...+.+||.||......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~----------------~~~l~iwD~pGq~~~~~- 63 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFLS----------------FLPLNIWDCPGQDDFME- 63 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGGGG-----SEEEEEEECTT----------------SCEEEEEEE-SSCSTTH-
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhccccCCcCCceEEEEecCC----------------CcEEEEEEcCCcccccc-
Confidence 6899999999999999999954444444555677777766665443 25699999999964432
Q ss_pred ccchhhHHhhhhhhcceEEEEEecc
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..+..+-..-.++++++++|+|+-
T Consensus 64 -~~~~~~~~~if~~v~~LIyV~D~q 87 (232)
T PF04670_consen 64 -NYFNSQREEIFSNVGVLIYVFDAQ 87 (232)
T ss_dssp -TTHTCCHHHHHCTESEEEEEEETT
T ss_pred -ccccccHHHHHhccCEEEEEEEcc
Confidence 112223344578999999999986
No 295
>PRK00098 GTPase RsgA; Reviewed
Probab=98.30 E-value=6e-07 Score=88.79 Aligned_cols=58 Identities=22% Similarity=0.300 Sum_probs=41.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCC-------ccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-------CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-------tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
+..++++|.||||||||+|+|+|.....++..+. ||+.+... .+++ ...++||
T Consensus 164 gk~~~~~G~sgvGKStlin~l~~~~~~~~g~v~~~~~~G~htT~~~~~~--~~~~------------------~~~~~Dt 223 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALAPDLELKTGEISEALGRGKHTTTHVELY--DLPG------------------GGLLIDT 223 (298)
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcCCCCcceeccCCCCCcccccEEEE--EcCC------------------CcEEEEC
Confidence 3579999999999999999999766555555543 55444332 2222 2589999
Q ss_pred CCCcC
Q 014539 129 AGLVK 133 (423)
Q Consensus 129 pGl~~ 133 (423)
||+..
T Consensus 224 pG~~~ 228 (298)
T PRK00098 224 PGFSS 228 (298)
T ss_pred CCcCc
Confidence 99964
No 296
>PRK13351 elongation factor G; Reviewed
Probab=98.30 E-value=2e-06 Score=94.45 Aligned_cols=85 Identities=16% Similarity=0.200 Sum_probs=57.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce-----ecC------------CCCccccceEEEEecCCccchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-----AAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----vs~------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
..+|+|+|.+|+|||||+++|+...... +.. ..+.|+......+...+
T Consensus 8 irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~--------------- 72 (687)
T PRK13351 8 IRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDN--------------- 72 (687)
T ss_pred ccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECC---------------
Confidence 3689999999999999999998422110 000 11233333333333332
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.++.||||||... +.......++.+|++++|+|+.+.
T Consensus 73 --~~i~liDtPG~~d-------f~~~~~~~l~~aD~~ilVvd~~~~ 109 (687)
T PRK13351 73 --HRINLIDTPGHID-------FTGEVERSLRVLDGAVVVFDAVTG 109 (687)
T ss_pred --EEEEEEECCCcHH-------HHHHHHHHHHhCCEEEEEEeCCCC
Confidence 6799999999853 233567778999999999998754
No 297
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=98.27 E-value=5.8e-07 Score=80.65 Aligned_cols=57 Identities=23% Similarity=0.375 Sum_probs=34.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcce---ecCC----CCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQ---AANF----PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~---vs~~----p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
-.++++|.++||||||+|+|.+..... ++.. -.||+... .+.++ ....++|||
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~--l~~l~------------------~g~~iIDTP 95 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRE--LFPLP------------------DGGYIIDTP 95 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEE--EEEET------------------TSEEEECSH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCee--EEecC------------------CCcEEEECC
Confidence 579999999999999999999754332 2222 24444332 33333 247899999
Q ss_pred CCcC
Q 014539 130 GLVK 133 (423)
Q Consensus 130 Gl~~ 133 (423)
|+..
T Consensus 96 Gf~~ 99 (161)
T PF03193_consen 96 GFRS 99 (161)
T ss_dssp HHHT
T ss_pred CCCc
Confidence 9954
No 298
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.26 E-value=2.8e-06 Score=74.86 Aligned_cols=160 Identities=17% Similarity=0.152 Sum_probs=90.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+|.-.+|.++|||||++-..| .......=.....+|.....+.+....-+ ...+--...+++|||+|..+.++
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YT-D~~F~~qFIsTVGIDFreKrvvY~s~gp~------g~gr~~rihLQlWDTAGQERFRS 82 (219)
T KOG0081|consen 10 IKFLALGDSGVGKTSFLYQYT-DGKFNTQFISTVGIDFREKRVVYNSSGPG------GGGRGQRIHLQLWDTAGQERFRS 82 (219)
T ss_pred HHHHhhccCCCCceEEEEEec-CCcccceeEEEeecccccceEEEeccCCC------CCCcceEEEEeeeccccHHHHHH
Confidence 355678999999999999888 33321111111112222222221110000 00011235699999999965544
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
..-+..|+|=..++++|.....+...+ .+|+
T Consensus 83 -------LTTAFfRDAMGFlLiFDlT~eqSFLnv----------------------------rnWl-------------- 113 (219)
T KOG0081|consen 83 -------LTTAFFRDAMGFLLIFDLTSEQSFLNV----------------------------RNWL-------------- 113 (219)
T ss_pred -------HHHHHHHhhccceEEEeccchHHHHHH----------------------------HHHH--------------
Confidence 455667888889999997543221100 1111
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
..++.+. | -...-+++..||. |+++. .....++..+++.+.+.|++.+
T Consensus 114 ------SQL~~hA------Y-----------------cE~PDivlcGNK~--DL~~~-R~Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 114 ------SQLQTHA------Y-----------------CENPDIVLCGNKA--DLEDQ-RVVSEDQAAALADKYGLPYFET 161 (219)
T ss_pred ------HHHHHhh------c-----------------cCCCCEEEEcCcc--chhhh-hhhhHHHHHHHHHHhCCCeeee
Confidence 1111000 1 1234567788999 56543 3445677788888899999999
Q ss_pred chhhhHhh
Q 014539 297 SAQVEAEL 304 (423)
Q Consensus 297 Sa~~e~~i 304 (423)
||-++.++
T Consensus 162 SA~tg~Nv 169 (219)
T KOG0081|consen 162 SACTGTNV 169 (219)
T ss_pred ccccCcCH
Confidence 99999887
No 299
>PTZ00099 rab6; Provisional
Probab=98.25 E-value=1.6e-05 Score=72.56 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=32.6
Q ss_pred CcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhc
Q 014539 256 MKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELT 305 (423)
Q Consensus 256 ~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~ 305 (423)
..|+++++||.| +.+. .....++...++...+..++++||+.+.++.
T Consensus 85 ~~piilVgNK~D--L~~~-~~v~~~e~~~~~~~~~~~~~e~SAk~g~nV~ 131 (176)
T PTZ00099 85 DVIIALVGNKTD--LGDL-RKVTYEEGMQKAQEYNTMFHETSAKAGHNIK 131 (176)
T ss_pred CCeEEEEEECcc--cccc-cCCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 468899999984 4322 1234555666676677789999999876663
No 300
>PRK13768 GTPase; Provisional
Probab=98.24 E-value=2.9e-06 Score=81.99 Aligned_cols=42 Identities=14% Similarity=0.207 Sum_probs=31.2
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhh--cceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIRE--VDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~--aD~il~Vvd~~~ 163 (423)
..+.++||||..+.... ...+..+.+++.. ++++++|+|++.
T Consensus 97 ~~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~~~~ii~liD~~~ 140 (253)
T PRK13768 97 ADYVLVDTPGQMELFAF-RESGRKLVERLSGSSKSVVVFLIDAVL 140 (253)
T ss_pred CCEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcCCeEEEEEechHH
Confidence 36999999998765432 3455666676666 899999999954
No 301
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=6e-06 Score=83.30 Aligned_cols=85 Identities=16% Similarity=0.209 Sum_probs=55.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceec-------------------------------CCCCccccceEEEEecCCc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA-------------------------------NFPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs-------------------------------~~p~tT~~~~~~~~~~~~~ 104 (423)
.+.++++|.+++|||||+-+|. .....+. ..-+.|++.....++.+-
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLl-y~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k- 84 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLL-YDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK- 84 (428)
T ss_pred ceEEEEEcCCCCCchhhhhhhH-HHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC-
Confidence 3789999999999999999987 3321111 112333333333332222
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
..+.++|+||. + .+.......+.+||+.++||||...+
T Consensus 85 ----------------~~~tIiDaPGH-r------dFvknmItGasqAD~aVLVV~a~~~e 122 (428)
T COG5256 85 ----------------YNFTIIDAPGH-R------DFVKNMITGASQADVAVLVVDARDGE 122 (428)
T ss_pred ----------------ceEEEeeCCch-H------HHHHHhhcchhhccEEEEEEECCCCc
Confidence 45999999994 2 23334556678999999999997654
No 302
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.22 E-value=6.8e-06 Score=80.60 Aligned_cols=26 Identities=23% Similarity=0.446 Sum_probs=22.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~ 81 (423)
.++|.++|.+|+|||||+|.|.+...
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~ 29 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDI 29 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhccc
Confidence 37899999999999999999995433
No 303
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=98.16 E-value=2.8e-06 Score=93.66 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=56.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce---------ecCC------CCccccceEEEE--ecCCccchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------AANF------PFCTIEPNVGIV--AVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~---------vs~~------p~tT~~~~~~~~--~~~~~r~~~l~~~~~~~~~ 118 (423)
..+|+++|..++|||||+++|+...... ..++ .+.|++...... ....
T Consensus 19 irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~--------------- 83 (720)
T TIGR00490 19 IRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG--------------- 83 (720)
T ss_pred ccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC---------------
Confidence 3589999999999999999997321111 0011 223333222111 1111
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...++.||||||.... .......++.||++++|+|+.+
T Consensus 84 ~~~~i~liDTPG~~~f-------~~~~~~al~~aD~~llVvda~~ 121 (720)
T TIGR00490 84 NEYLINLIDTPGHVDF-------GGDVTRAMRAVDGAIVVVCAVE 121 (720)
T ss_pred CceEEEEEeCCCcccc-------HHHHHHHHHhcCEEEEEEecCC
Confidence 1367999999999643 2356788999999999999865
No 304
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.12 E-value=2.4e-06 Score=84.14 Aligned_cols=58 Identities=24% Similarity=0.351 Sum_probs=39.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCC-------CccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
..++++|.+|||||||+|+|+|.....++..+ .||++.. .+..++ ...++|||
T Consensus 162 k~~~~~G~sg~GKSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~--~~~~~~------------------~~~liDtP 221 (287)
T cd01854 162 KTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTHRE--LFPLPG------------------GGLLIDTP 221 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHhchhhccccceeccCCCCCcccceEE--EEEcCC------------------CCEEEECC
Confidence 57999999999999999999976554433322 3454432 222221 24799999
Q ss_pred CCcCC
Q 014539 130 GLVKG 134 (423)
Q Consensus 130 Gl~~~ 134 (423)
|+...
T Consensus 222 G~~~~ 226 (287)
T cd01854 222 GFREF 226 (287)
T ss_pred CCCcc
Confidence 99653
No 305
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=98.11 E-value=4.8e-05 Score=66.89 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=60.2
Q ss_pred ccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 51 ~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
+++...++|.++|.-+||||.++..|.=+.......+--|--|...+.+..+.. ...++.|.||+|
T Consensus 4 ~kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rg--------------arE~l~lyDTaG 69 (198)
T KOG3883|consen 4 AKMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRG--------------AREQLRLYDTAG 69 (198)
T ss_pred hhhCcceEEEEECCccccHHHHHHHHHhccCCCCCccccchhhheeEeeecCCC--------------hhheEEEeeccc
Confidence 355667899999999999999999998444333333333333444454544332 236799999999
Q ss_pred CcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 131 l~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+-.+.. . .-..++.-+|+.++|.+..
T Consensus 70 lq~~~~---e---Lprhy~q~aDafVLVYs~~ 95 (198)
T KOG3883|consen 70 LQGGQQ---E---LPRHYFQFADAFVLVYSPM 95 (198)
T ss_pred ccCchh---h---hhHhHhccCceEEEEecCC
Confidence 965421 1 1224456689999998853
No 306
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.10 E-value=5.8e-05 Score=75.29 Aligned_cols=28 Identities=25% Similarity=0.450 Sum_probs=24.5
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+..-.+.|.++|..|.||||++|.|.+.
T Consensus 19 k~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 19 KKGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred hcCCceEEEEecCCCCchhHHHHhhhHh
Confidence 3356689999999999999999999965
No 307
>TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family. (p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species.
Probab=98.09 E-value=4.3e-06 Score=91.35 Aligned_cols=63 Identities=19% Similarity=0.150 Sum_probs=55.7
Q ss_pred CCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014539 338 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 417 (423)
Q Consensus 338 ~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 417 (423)
+-|.+|| ..-++..+|+|||+.|+|..||||+...++.|+|.+ +.++.+|+|++||+|
T Consensus 360 ~~i~vfT---PkG~~~~lp~gst~~DfAy~ih~~~g~~~~~a~vng-------------------~~v~l~~~l~~gd~v 417 (683)
T TIGR00691 360 EEIYVFT---PKGDVVELPSGSTPVDFAYAVHTDVGNKCTGAKVNG-------------------KIVPLDKELENGDVV 417 (683)
T ss_pred CceEEEC---CCCeEEEcCCCCCHHHHHHHHhHHhHhceeEEEECC-------------------EECCCCccCCCCCEE
Confidence 7788888 335789999999999999999999999999999775 269999999999999
Q ss_pred EEEec
Q 014539 418 LFRFN 422 (423)
Q Consensus 418 ~~~f~ 422 (423)
+|-.+
T Consensus 418 ei~t~ 422 (683)
T TIGR00691 418 EIITG 422 (683)
T ss_pred EEEeC
Confidence 99764
No 308
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=98.08 E-value=2.7e-05 Score=80.77 Aligned_cols=148 Identities=21% Similarity=0.174 Sum_probs=96.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcc--------------eecCCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKA--------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~--------------~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
-.++||-.--=|||||.-+|.....+ .+...-+.|+..+...+.+.+. .+..
T Consensus 61 RNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~--------------~~yl 126 (650)
T KOG0462|consen 61 RNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDG--------------QSYL 126 (650)
T ss_pred cceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcC--------------CceE
Confidence 35788888888999999998742221 1223345666666555544331 1256
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcc----------------eeeecccccCCcchHHHhhh
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND----------------IVHVNGKVDPKSDVDVINLE 186 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~----------------~~~~~~~~dp~~d~~~i~~E 186 (423)
+.+|||||-+.... ..-..+.-||.+|+||||++... ++.+.|++|.-
T Consensus 127 LNLIDTPGHvDFs~-------EVsRslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp--------- 190 (650)
T KOG0462|consen 127 LNLIDTPGHVDFSG-------EVSRSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLP--------- 190 (650)
T ss_pred EEeecCCCcccccc-------eehehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCC---------
Confidence 88999999987655 34455677999999999987652 56677777733
Q ss_pred hccCcHHHHHHHHHHhhhcccc---chhhhhhHHHHHHHHHHHHHHhcCCCCC
Q 014539 187 LVFSDLDQIEKRMEKLKKGKAK---DSQSKLKDAEKAALEKIQQALMDGKPAR 236 (423)
Q Consensus 187 l~l~d~~~~e~~~~~~~~~~~~---~~sa~~~~~~~~ll~~i~~~L~~~~~~~ 236 (423)
-.+.+.++..+..+...... ..||+++.+...+|+.|.+..|.-+...
T Consensus 191 --~adpe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 191 --SADPERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred --CCCHHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 23444444444443333222 1268999999999999999988644333
No 309
>PTZ00416 elongation factor 2; Provisional
Probab=98.06 E-value=1.2e-05 Score=89.96 Aligned_cols=94 Identities=19% Similarity=0.239 Sum_probs=56.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccc---------------cceEEEEecCCccchhhccccccccccCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI---------------EPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~---------------~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
..|+|+|.+++|||||.++|+....+......++|+ +.....+.+... ....++-...
T Consensus 20 rni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~-------~~~~~~~~~~ 92 (836)
T PTZ00416 20 RNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHD-------LEDGDDKQPF 92 (836)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecc-------cccccCCCce
Confidence 479999999999999999999543332222222221 111111111100 0000011135
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.+.|+||||..+ +.......++.+|++++|+|+.+.
T Consensus 93 ~i~liDtPG~~~-------f~~~~~~al~~~D~ailVvda~~g 128 (836)
T PTZ00416 93 LINLIDSPGHVD-------FSSEVTAALRVTDGALVVVDCVEG 128 (836)
T ss_pred EEEEEcCCCHHh-------HHHHHHHHHhcCCeEEEEEECCCC
Confidence 689999999854 334567888999999999998764
No 310
>PRK12740 elongation factor G; Reviewed
Probab=98.06 E-value=7.9e-06 Score=89.55 Aligned_cols=79 Identities=20% Similarity=0.225 Sum_probs=52.1
Q ss_pred EecCCCCccHHHHHHhhcCccee--cC---------------CCCccccceEEEEecCCccchhhccccccccccCceEE
Q 014539 62 VGLPNVGKSTLFNAVVENGKAQA--AN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVE 124 (423)
Q Consensus 62 vG~pnvGKSTL~N~Ltg~~~~~v--s~---------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~ 124 (423)
||.+|+|||||+|+|.....+.. ++ ..+.|+......+...+ .++.
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~-----------------~~i~ 63 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKG-----------------HKIN 63 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECC-----------------EEEE
Confidence 69999999999999963222211 11 12333333333333332 5799
Q ss_pred EEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 125 lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
||||||... +.......++.+|++++|+|+++.
T Consensus 64 liDtPG~~~-------~~~~~~~~l~~aD~vllvvd~~~~ 96 (668)
T PRK12740 64 LIDTPGHVD-------FTGEVERALRVLDGAVVVVCAVGG 96 (668)
T ss_pred EEECCCcHH-------HHHHHHHHHHHhCeEEEEEeCCCC
Confidence 999999843 334566778999999999998764
No 311
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=98.06 E-value=4.5e-06 Score=69.82 Aligned_cols=77 Identities=21% Similarity=0.378 Sum_probs=47.7
Q ss_pred eeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhc---------------------C--CChHHH------
Q 014539 262 VANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELT---------------------E--LPSEER------ 312 (423)
Q Consensus 262 v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~---------------------~--l~~ee~------ 312 (423)
++||.| .+.+ .++++++++.. .+..+||+||..|.-|. + |+++++
T Consensus 1 AaNK~D--~~~a--~~ni~kl~~~~--~~~~vVp~SA~aEl~Lr~a~k~g~I~Y~pGd~~F~i~~~~~l~~~q~~~Le~I 74 (109)
T PF08438_consen 1 AANKAD--LPAA--DENIEKLKEKY--PDEPVVPTSAAAELALRKAAKAGLIDYIPGDSDFEITDDDKLSDKQKKALEKI 74 (109)
T ss_dssp EEE-GG--G-S---HHHHHHHHHHH--TT-EEEEE-HHHHHHHHS-SSS----S----------------------TTHH
T ss_pred CCcccc--cccc--HhHHHHHHHhC--CCCceeeccHHHHHHHHHHHHCCCEEeCCCCCceEeecccccCHHHHHHHHHH
Confidence 589994 5443 56777777644 35679999999999641 1 444332
Q ss_pred HH-HHHHcCCCCChhhHHHH-HHHhhhCCEEEecCC
Q 014539 313 VE-YLASLGVSESGLGNLIR-STYSLLGLRTYFTSG 346 (423)
Q Consensus 313 ~~-~l~~~g~~~~~~~~li~-~~~~~L~li~~fT~g 346 (423)
++ +|..|| .+|++++|+ ++|++|++|.||++.
T Consensus 75 ~~~vl~~~g--~TGVq~aln~AVf~ll~~i~VyPVe 108 (109)
T PF08438_consen 75 RDNVLERYG--STGVQEALNRAVFDLLGMIVVYPVE 108 (109)
T ss_dssp HHHHTSSSS--S-SHHHHHHHHHHTTS-EEEEEEES
T ss_pred HHHHHHhcC--CchHHHHHHHHHHHhcCCeeEeccC
Confidence 23 666676 599999996 677999999999974
No 312
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.03 E-value=0.00012 Score=73.54 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=27.5
Q ss_pred hhhhccccCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 47 FSSASKISMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 47 ~~~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.++..+..-.+.+.++|..+.|||||+|.|.+.
T Consensus 12 ~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~ 44 (366)
T KOG2655|consen 12 HRKSVKKGFDFTLMVVGESGLGKSTFINSLFLT 44 (366)
T ss_pred HHHHHhcCCceEEEEecCCCccHHHHHHHHHhh
Confidence 445555666789999999999999999999865
No 313
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=69.50 Aligned_cols=82 Identities=21% Similarity=0.275 Sum_probs=57.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
+...+|+++|.-|+||||++..|.+.....+.+ |.-.+...+.+.+ .-++.+||+.|..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltp----T~GFn~k~v~~~g----------------~f~LnvwDiGGqr- 73 (185)
T KOG0074|consen 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTP----TNGFNTKKVEYDG----------------TFHLNVWDIGGQR- 73 (185)
T ss_pred cceEEEEEEecCCCcchhHHHHHccCChhhccc----cCCcceEEEeecC----------------cEEEEEEecCCcc-
Confidence 345899999999999999999999655433222 2233334444433 1468999999983
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
++.--+-++..+.|.+|+|+|..
T Consensus 74 ------~IRpyWsNYyenvd~lIyVIDS~ 96 (185)
T KOG0074|consen 74 ------GIRPYWSNYYENVDGLIYVIDST 96 (185)
T ss_pred ------ccchhhhhhhhccceEEEEEeCC
Confidence 23335667899999999999943
No 314
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.02 E-value=2.9e-06 Score=76.20 Aligned_cols=152 Identities=19% Similarity=0.141 Sum_probs=92.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+|+.|||.-+|||||++.+.+ .....-...-..-.+.....+.+.++. ..+++|||+|..+.
T Consensus 20 aiK~vivGng~VGKssmiqryC-kgifTkdykktIgvdflerqi~v~~Ed---------------vr~mlWdtagqeEf- 82 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYC-KGIFTKDYKKTIGVDFLERQIKVLIED---------------VRSMLWDTAGQEEF- 82 (246)
T ss_pred hEEEEEECCCccchHHHHHHHh-ccccccccccccchhhhhHHHHhhHHH---------------HHHHHHHhccchhH-
Confidence 4799999999999999999999 443322222222222222222332221 44789999998433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
..-..++.|.|.+.++|+...+. ..++...+|..+..+
T Consensus 83 ------DaItkAyyrgaqa~vLVFSTTDr----------------------------~SFea~~~w~~kv~~-------- 120 (246)
T KOG4252|consen 83 ------DAITKAYYRGAQASVLVFSTTDR----------------------------YSFEATLEWYNKVQK-------- 120 (246)
T ss_pred ------HHHHHHHhccccceEEEEecccH----------------------------HHHHHHHHHHHHHHH--------
Confidence 23456889999999999875421 112222233222110
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
..-.-|.+++-|+. |+.+. +.-...+++.+++..+..++.
T Consensus 121 -------------------------------------e~~~IPtV~vqNKI--Dlved-s~~~~~evE~lak~l~~RlyR 160 (246)
T KOG4252|consen 121 -------------------------------------ETERIPTVFVQNKI--DLVED-SQMDKGEVEGLAKKLHKRLYR 160 (246)
T ss_pred -------------------------------------HhccCCeEEeeccc--hhhHh-hhcchHHHHHHHHHhhhhhhh
Confidence 01466899999998 45442 244455666666666677888
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+|++-+.+++.
T Consensus 161 tSvked~NV~~ 171 (246)
T KOG4252|consen 161 TSVKEDFNVMH 171 (246)
T ss_pred hhhhhhhhhHH
Confidence 99988777643
No 315
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.01 E-value=0.00023 Score=67.15 Aligned_cols=67 Identities=21% Similarity=0.340 Sum_probs=41.1
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcce-------ecCCCCccccceE-EEEecCCccchhhccccccccccCceE
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQ-------AANFPFCTIEPNV-GIVAVPDPRLHVLSGLSKSQKAVPASV 123 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~-------vs~~p~tT~~~~~-~~~~~~~~r~~~l~~~~~~~~~~~~~i 123 (423)
+..-.+.|.+||.++.|||||+|.|....... ..++|.||--... ..+.-.+.+ -++
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVk---------------lkl 106 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVK---------------LKL 106 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceE---------------EEE
Confidence 33445789999999999999999998432222 1134444422111 122222222 468
Q ss_pred EEEecCCCcC
Q 014539 124 EFVDIAGLVK 133 (423)
Q Consensus 124 ~lvDtpGl~~ 133 (423)
.++||||+-.
T Consensus 107 tviDTPGfGD 116 (336)
T KOG1547|consen 107 TVIDTPGFGD 116 (336)
T ss_pred EEecCCCccc
Confidence 9999999943
No 316
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.98 E-value=0.00021 Score=74.37 Aligned_cols=85 Identities=21% Similarity=0.170 Sum_probs=57.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++-|.|.|.--=|||||+-+|- +........-+.|.+.-.-.+++|.. ..++|+||||-..
T Consensus 151 ~RpPVVTiMGHVDHGKTTLLD~lR-ks~VAA~E~GGITQhIGAF~V~~p~G----------------~~iTFLDTPGHaA 213 (683)
T KOG1145|consen 151 PRPPVVTIMGHVDHGKTTLLDALR-KSSVAAGEAGGITQHIGAFTVTLPSG----------------KSITFLDTPGHAA 213 (683)
T ss_pred CCCCeEEEeecccCChhhHHHHHh-hCceehhhcCCccceeceEEEecCCC----------------CEEEEecCCcHHH
Confidence 345789999999999999999998 44444445556665544444555542 4699999999731
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+ ...--+-..-+|.+++||-+-
T Consensus 214 F-------~aMRaRGA~vtDIvVLVVAad 235 (683)
T KOG1145|consen 214 F-------SAMRARGANVTDIVVLVVAAD 235 (683)
T ss_pred H-------HHHHhccCccccEEEEEEEcc
Confidence 1 111122244579999999863
No 317
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.98 E-value=5.3e-06 Score=81.16 Aligned_cols=58 Identities=24% Similarity=0.291 Sum_probs=38.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcc---eecCCC----CccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKA---QAANFP----FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~---~vs~~p----~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
-..+++|.+|||||||+|+|.+.... .+|..- +||++ ...+.++. .=.++|||
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~--~~l~~l~~------------------gG~iiDTP 224 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTH--VELFPLPG------------------GGWIIDTP 224 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccce--EEEEEcCC------------------CCEEEeCC
Confidence 46899999999999999999974433 333333 34433 22334431 25799999
Q ss_pred CCcCC
Q 014539 130 GLVKG 134 (423)
Q Consensus 130 Gl~~~ 134 (423)
|+...
T Consensus 225 Gf~~~ 229 (301)
T COG1162 225 GFRSL 229 (301)
T ss_pred CCCcc
Confidence 99543
No 318
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.92 E-value=2.8e-05 Score=77.90 Aligned_cols=25 Identities=48% Similarity=0.732 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.....|+|.|.||+|||||+++|..
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~ 78 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGM 78 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHH
Confidence 4457899999999999999998763
No 319
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.92 E-value=3.8e-05 Score=86.22 Aligned_cols=99 Identities=21% Similarity=0.240 Sum_probs=56.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCc---------------cccceEEEEecCC--ccchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFC---------------TIEPNVGIVAVPD--PRLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~t---------------T~~~~~~~~~~~~--~r~~~l~~~~~~~~~ 118 (423)
...|+|+|.+++|||||.++|+...........++ |+......+.+.. ..+...... .+.
T Consensus 19 Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~---~~~ 95 (843)
T PLN00116 19 IRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGE---RDG 95 (843)
T ss_pred ccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccc---cCC
Confidence 35799999999999999999984433222222222 2222111111110 000000000 001
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
....+.|+||||... +.......++.||+.++|||+.+.
T Consensus 96 ~~~~inliDtPGh~d-------F~~e~~~al~~~D~ailVvda~~G 134 (843)
T PLN00116 96 NEYLINLIDSPGHVD-------FSSEVTAALRITDGALVVVDCIEG 134 (843)
T ss_pred CceEEEEECCCCHHH-------HHHHHHHHHhhcCEEEEEEECCCC
Confidence 134688999999843 333567778999999999998765
No 320
>PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional
Probab=97.92 E-value=1.9e-05 Score=86.35 Aligned_cols=63 Identities=30% Similarity=0.231 Sum_probs=54.2
Q ss_pred CCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014539 338 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 417 (423)
Q Consensus 338 ~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 417 (423)
+-|.|||- + -+...+|+|||+.|+|..||||+...|+.|+|= | +.+..+|.|++||+|
T Consensus 404 d~V~VfTP--k-G~~~~Lp~gaT~lDfAy~iHt~iG~~~~gAkvn-----------------g--~~v~l~~~L~~GD~V 461 (743)
T PRK10872 404 DRVYVFTP--K-GDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIG-----------------G--RIVPFTYQLQMGDQI 461 (743)
T ss_pred CeEEEECC--C-CCeEEcCCCCcHHHHHHHHhHHHHhhceEEEEC-----------------C--EECCCCcCCCCCCEE
Confidence 77999982 1 148999999999999999999999999999842 4 369999999999999
Q ss_pred EEEec
Q 014539 418 LFRFN 422 (423)
Q Consensus 418 ~~~f~ 422 (423)
+|..+
T Consensus 462 eIits 466 (743)
T PRK10872 462 EIITQ 466 (743)
T ss_pred EEEeC
Confidence 99764
No 321
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.91 E-value=9.4e-05 Score=73.24 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
....|+|+|.||+|||||++.|..
T Consensus 33 ~~~~i~i~G~~G~GKttl~~~l~~ 56 (300)
T TIGR00750 33 NAHRVGITGTPGAGKSTLLEALGM 56 (300)
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 457899999999999999999884
No 322
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.87 E-value=3.3e-05 Score=85.47 Aligned_cols=88 Identities=20% Similarity=0.248 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCC---------------CccccceEEEEecCCccchhhccccccccccCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPA 121 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p---------------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~ 121 (423)
..|+++|.+++|||||..+|.....+...... +.|++.....+.+. +. ....
T Consensus 21 Rni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~----------~~---~~~~ 87 (731)
T PRK07560 21 RNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHE----------YE---GKEY 87 (731)
T ss_pred cEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEE----------ec---CCcE
Confidence 46999999999999999999843322211111 12222222111110 00 0136
Q ss_pred eEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 122 SVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 122 ~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
++.|+||||..+. .......++.+|++++|||+.+.
T Consensus 88 ~i~liDtPG~~df-------~~~~~~~l~~~D~avlVvda~~g 123 (731)
T PRK07560 88 LINLIDTPGHVDF-------GGDVTRAMRAVDGAIVVVDAVEG 123 (731)
T ss_pred EEEEEcCCCccCh-------HHHHHHHHHhcCEEEEEEECCCC
Confidence 7999999998653 34667788999999999998654
No 323
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=97.73 E-value=0.00015 Score=76.04 Aligned_cols=37 Identities=19% Similarity=0.192 Sum_probs=27.4
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
..++|+|+||.-.+- .-+++.+.+||+.++||||+..
T Consensus 255 ~~~tliDaPGhkdFi-------~nmi~g~sqaD~avLvvd~s~~ 291 (603)
T KOG0458|consen 255 KIVTLIDAPGHKDFI-------PNMISGASQADVAVLVVDASTG 291 (603)
T ss_pred eeEEEecCCCccccc-------hhhhccccccceEEEEEECCcc
Confidence 458999999942222 2355667889999999999754
No 324
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00058 Score=71.20 Aligned_cols=85 Identities=18% Similarity=0.073 Sum_probs=53.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
++-|.++|.---|||||+-.+-+ ........-+.|.+.-...++.+.. ....+.|+||||-..+
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~-t~Va~~EaGGITQhIGA~~v~~~~~--------------~~~~itFiDTPGHeAF- 68 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRK-TNVAAGEAGGITQHIGAYQVPLDVI--------------KIPGITFIDTPGHEAF- 68 (509)
T ss_pred CCEEEEeCcccCCccchhhhHhc-CccccccCCceeeEeeeEEEEeccC--------------CCceEEEEcCCcHHHH-
Confidence 46799999999999999999983 3333334445565443333443210 0135999999997321
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+.--+-..-||++++|||+-
T Consensus 69 ------t~mRaRGa~vtDIaILVVa~d 89 (509)
T COG0532 69 ------TAMRARGASVTDIAILVVAAD 89 (509)
T ss_pred ------HHHHhcCCccccEEEEEEEcc
Confidence 111112234589999999974
No 325
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.62 E-value=0.00011 Score=78.03 Aligned_cols=105 Identities=20% Similarity=0.233 Sum_probs=65.1
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccc-----c---ceEEEEecCC--ccc---------------
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTI-----E---PNVGIVAVPD--PRL--------------- 106 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~-----~---~~~~~~~~~~--~r~--------------- 106 (423)
..+..+||+|.|++|+||||++||+. .+....+..-.||- + -..+..-.++ +..
T Consensus 105 l~r~~mKV~ifGrts~GKSt~iNAmL-~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~ 183 (749)
T KOG0448|consen 105 LARRHMKVAIFGRTSAGKSTVINAML-HKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPD 183 (749)
T ss_pred HhhcccEEEEeCCCCCcHHHHHHHHH-HHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcc
Confidence 33456899999999999999999999 44433333333331 1 1111111221 111
Q ss_pred -----hhhcccccccc---ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEec
Q 014539 107 -----HVLSGLSKSQK---AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 107 -----~~l~~~~~~~~---~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~ 161 (423)
..|..+|.|+. +....+.++|.||+--+ ..+..-.-+...+||+.++|+.+
T Consensus 184 ~~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~----se~tswid~~cldaDVfVlV~Na 242 (749)
T KOG0448|consen 184 KDLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVD----SELTSWIDSFCLDADVFVLVVNA 242 (749)
T ss_pred cccCcceEEEEEecCccchhhhccceeccCCCCCCc----hhhhHHHHHHhhcCCeEEEEecC
Confidence 12445666664 34557999999999433 23334456778899999999987
No 326
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=97.61 E-value=0.00015 Score=74.40 Aligned_cols=142 Identities=20% Similarity=0.215 Sum_probs=89.9
Q ss_pred EEEEecCCCCccHHHHHHhhcCcc--------------eecCCCCccccceEEEEecCCccchhhccccccccccCceEE
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKA--------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVE 124 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~--------------~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~ 124 (423)
.+||-.---|||||--+|.....+ .....-+.|+..+...+.+.... -....+.
T Consensus 12 FsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~------------g~~Y~ln 79 (603)
T COG0481 12 FSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKD------------GETYVLN 79 (603)
T ss_pred eEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCC------------CCEEEEE
Confidence 456666677999999998742111 12234477777777666543211 0125688
Q ss_pred EEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcc----------------eeeeccccc-CCcchHHHhhhh
Q 014539 125 FVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND----------------IVHVNGKVD-PKSDVDVINLEL 187 (423)
Q Consensus 125 lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~----------------~~~~~~~~d-p~~d~~~i~~El 187 (423)
|+||||-+.... ..-+.+..|...|+||||++.-. ++.+.|++| |..|.
T Consensus 80 lIDTPGHVDFsY-------EVSRSLAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adp------- 145 (603)
T COG0481 80 LIDTPGHVDFSY-------EVSRSLAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADP------- 145 (603)
T ss_pred EcCCCCccceEE-------EehhhHhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCCCH-------
Confidence 999999987765 23445677999999999987632 455666666 33333
Q ss_pred ccCcHHHHHHHHHHhhhccccc---hhhhhhHHHHHHHHHHHHHHhc
Q 014539 188 VFSDLDQIEKRMEKLKKGKAKD---SQSKLKDAEKAALEKIQQALMD 231 (423)
Q Consensus 188 ~l~d~~~~e~~~~~~~~~~~~~---~sa~~~~~~~~ll~~i~~~L~~ 231 (423)
+.+...++.+-....+. .||+++.++.++|+.+.+.+|.
T Consensus 146 -----ervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~ 187 (603)
T COG0481 146 -----ERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPP 187 (603)
T ss_pred -----HHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCC
Confidence 33333333322222121 2589999999999999999875
No 327
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=97.59 E-value=0.00012 Score=76.58 Aligned_cols=83 Identities=19% Similarity=0.260 Sum_probs=50.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|++||..++|||||+-+|+...-.. +.| +..-.+.+|-. +.|.. ....++||..-.
T Consensus 9 dVRIvliGD~G~GKtSLImSL~~eef~~--~VP-----~rl~~i~IPad--------vtPe~---vpt~ivD~ss~~--- 67 (625)
T KOG1707|consen 9 DVRIVLIGDEGVGKTSLIMSLLEEEFVD--AVP-----RRLPRILIPAD--------VTPEN---VPTSIVDTSSDS--- 67 (625)
T ss_pred ceEEEEECCCCccHHHHHHHHHhhhccc--ccc-----ccCCccccCCc--------cCcCc---CceEEEeccccc---
Confidence 4799999999999999999999543221 111 11111111100 11111 237899997321
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.-.......++.||+|+.|..+.+
T Consensus 68 ----~~~~~l~~EirkA~vi~lvyavd~ 91 (625)
T KOG1707|consen 68 ----DDRLCLRKEIRKADVICLVYAVDD 91 (625)
T ss_pred ----chhHHHHHHHhhcCEEEEEEecCC
Confidence 112355788999999999988654
No 328
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.57 E-value=0.0001 Score=65.73 Aligned_cols=80 Identities=19% Similarity=0.316 Sum_probs=59.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..|+.+.|.-|||||||++.|-....+ ....|.+|....+.+.+ -.++-+|.-|-..
T Consensus 20 ~gKllFlGLDNAGKTTLLHMLKdDrl~----qhvPTlHPTSE~l~Ig~-----------------m~ftt~DLGGH~q-- 76 (193)
T KOG0077|consen 20 FGKLLFLGLDNAGKTTLLHMLKDDRLG----QHVPTLHPTSEELSIGG-----------------MTFTTFDLGGHLQ-- 76 (193)
T ss_pred CceEEEEeecCCchhhHHHHHcccccc----ccCCCcCCChHHheecC-----------------ceEEEEccccHHH--
Confidence 468999999999999999999833322 23447778777777765 5588899988521
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
-.+.+..++-.||+|++.|||.+
T Consensus 77 -----Arr~wkdyf~~v~~iv~lvda~d 99 (193)
T KOG0077|consen 77 -----ARRVWKDYFPQVDAIVYLVDAYD 99 (193)
T ss_pred -----HHHHHHHHHhhhceeEeeeehhh
Confidence 12345678889999999999853
No 329
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=97.57 E-value=4.3e-05 Score=70.65 Aligned_cols=86 Identities=21% Similarity=0.249 Sum_probs=60.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+|+.|||..++|||+|+-..+ ....+....|... |.....+.++|.+ +..+-||||+|.....
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t-~~~fp~~yvPTVF-dnys~~v~V~dg~--------------~v~L~LwDTAGqedYD 67 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYT-TNAFPEEYVPTVF-DNYSANVTVDDGK--------------PVELGLWDTAGQEDYD 67 (198)
T ss_pred eeEEEEECCCCcCceEEEEEec-cCcCcccccCeEE-ccceEEEEecCCC--------------EEEEeeeecCCCcccc
Confidence 3799999999999999999999 5555554445443 5555556675222 2568999999997653
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
. + +-+ .+.++|++|.+++..++
T Consensus 68 r----l--Rpl-sY~~tdvfl~cfsv~~p 89 (198)
T KOG0393|consen 68 R----L--RPL-SYPQTDVFLLCFSVVSP 89 (198)
T ss_pred c----c--ccc-CCCCCCEEEEEEEcCCh
Confidence 2 1 122 56889999988876443
No 330
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.55 E-value=0.00078 Score=66.20 Aligned_cols=153 Identities=23% Similarity=0.218 Sum_probs=86.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc-------------------eecCCCCccccceEEEEecCCccchhhcccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA-------------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~-------------------~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~ 115 (423)
....||.||.--=|||||..||+|--.. ..-.+|.|-.. ...... .-+..+..
T Consensus 9 p~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~-~~y~~~-------~~C~~cg~ 80 (415)
T COG5257 9 PEVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRP-ECYTTE-------PKCPNCGA 80 (415)
T ss_pred cceEeeeeeecccchhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCC-cccccC-------CCCCCCCC
Confidence 3478999999999999999999972111 11111111100 000000 00111111
Q ss_pred ccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc------------------ceeeecccccCC
Q 014539 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN------------------DIVHVNGKVDPK 177 (423)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~------------------~~~~~~~~~dp~ 177 (423)
....-..+-|+|.||- +-+....|+-..--|+.++|+.+.++- +++.+.|++|.+
T Consensus 81 ~~~l~R~VSfVDaPGH-------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV 153 (415)
T COG5257 81 ETELVRRVSFVDAPGH-------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV 153 (415)
T ss_pred CccEEEEEEEeeCCch-------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence 1111235889999996 456666677777779999999997652 245566777766
Q ss_pred cchHHHhhhhccCcHHHHHHHHHHhhhcc-ccc----hhhhhhHHHHHHHHHHHHHHhc
Q 014539 178 SDVDVINLELVFSDLDQIEKRMEKLKKGK-AKD----SQSKLKDAEKAALEKIQQALMD 231 (423)
Q Consensus 178 ~d~~~i~~El~l~d~~~~e~~~~~~~~~~-~~~----~sa~~~~~~~~ll~~i~~~L~~ 231 (423)
+.-..+++ .+...++++-.. ... .||....+++.|++.+.+..|.
T Consensus 154 ~~E~AlE~---------y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~Ipt 203 (415)
T COG5257 154 SRERALEN---------YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPT 203 (415)
T ss_pred cHHHHHHH---------HHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCC
Confidence 54333221 222233322111 111 1578888999999999888774
No 331
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.52 E-value=0.00035 Score=59.65 Aligned_cols=77 Identities=22% Similarity=0.237 Sum_probs=50.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
-++++||..++||+||+|+|-|...- +-.| .-+++.+ =-.+||||-.-..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~l-----ykKT-----QAve~~d-------------------~~~IDTPGEy~~~- 51 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTL-----YKKT-----QAVEFND-------------------KGDIDTPGEYFEH- 51 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhh-----hccc-----ceeeccC-------------------ccccCCchhhhhh-
Confidence 37999999999999999999965421 1111 1133322 2368999974221
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
..+-...+-...++|+|++|-.+.++.
T Consensus 52 --~~~Y~aL~tt~~dadvi~~v~~and~~ 78 (148)
T COG4917 52 --PRWYHALITTLQDADVIIYVHAANDPE 78 (148)
T ss_pred --hHHHHHHHHHhhccceeeeeecccCcc
Confidence 122234556678999999998876653
No 332
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=97.52 E-value=0.00042 Score=61.17 Aligned_cols=87 Identities=18% Similarity=0.182 Sum_probs=56.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
.-.+||+++|.+..|||||+-...|+..-+ ...-...+......+.+.+.+ ..+-+||..|..+
T Consensus 18 ~Vslkv~llGD~qiGKTs~mvkYV~~~~de-~~~q~~GvN~mdkt~~i~~t~---------------IsfSIwdlgG~~~ 81 (205)
T KOG1673|consen 18 LVSLKVGLLGDAQIGKTSLMVKYVQNEYDE-EYTQTLGVNFMDKTVSIRGTD---------------ISFSIWDLGGQRE 81 (205)
T ss_pred ceEEEEEeecccccCceeeehhhhcchhHH-HHHHHhCccceeeEEEecceE---------------EEEEEEecCCcHh
Confidence 345899999999999999999988544321 111112222333344444432 3477999999843
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .+...-...++-+|++++|.+.
T Consensus 82 ~-------~n~lPiac~dsvaIlFmFDLt~ 104 (205)
T KOG1673|consen 82 F-------INMLPIACKDSVAILFMFDLTR 104 (205)
T ss_pred h-------hccCceeecCcEEEEEEEecCc
Confidence 2 2345556788899999999653
No 333
>PRK01889 GTPase RsgA; Reviewed
Probab=97.50 E-value=6e-05 Score=76.46 Aligned_cols=30 Identities=30% Similarity=0.450 Sum_probs=24.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceec
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAA 85 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs 85 (423)
+-.++++|.||+|||||+|+|+|.....++
T Consensus 195 g~~~~lvG~sgvGKStLin~L~g~~~~~~G 224 (356)
T PRK01889 195 GKTVALLGSSGVGKSTLVNALLGEEVQKTG 224 (356)
T ss_pred CCEEEEECCCCccHHHHHHHHHHhccccee
Confidence 358999999999999999999975554333
No 334
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=97.44 E-value=0.00012 Score=65.51 Aligned_cols=105 Identities=15% Similarity=0.209 Sum_probs=54.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcc----eecCCCC-cccc------ceEEEEecCCcc---------chhhccccc--c
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKA----QAANFPF-CTIE------PNVGIVAVPDPR---------LHVLSGLSK--S 115 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~----~vs~~p~-tT~~------~~~~~~~~~~~r---------~~~l~~~~~--~ 115 (423)
-+.++|+.++|||||++.+.+.... ...+..+ ...+ ....++.+.+.. .+.+.++.. .
T Consensus 2 ~~~l~G~~GsGKTtl~~~l~~~~~~~~~~~i~~~~G~~~~d~~~~~~~~~~v~~l~~GCiCC~~~~~l~~~l~~l~~~~~ 81 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFGEVGIDNQLVVDTDEEIIEMNNGCICCTVRGDLIRALLDLLERLD 81 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHhcccCCcEEEEecCCCccchhHHHHhCCCceEEEeCCCEeEeeCchhHHHHHHHHHHHHH
Confidence 4689999999999999999843211 0100000 1111 112233333211 111211111 1
Q ss_pred ccccCceEEEEecCCCcCCCCcccch-hhHHhhhhhhcceEEEEEecc
Q 014539 116 QKAVPASVEFVDIAGLVKGASQGEGL-GNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l-~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+..+.+.+|+||||+.++.+.-+.+ ....+...-++|.++.|+|+.
T Consensus 82 ~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~ 129 (158)
T cd03112 82 AGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAK 129 (158)
T ss_pred hccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhh
Confidence 11223568999999997654322111 122344566789999999974
No 335
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.43 E-value=0.00073 Score=76.77 Aligned_cols=86 Identities=16% Similarity=0.074 Sum_probs=47.3
Q ss_pred CCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhcc----ccccccccCceEEEEecCCCcCCCCcccchh
Q 014539 67 VGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSG----LSKSQKAVPASVEFVDIAGLVKGASQGEGLG 142 (423)
Q Consensus 67 vGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~----~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~ 142 (423)
++||||+-+|.+... .....-+.|.+.-...++.+. ....+. ..+. ++.-..+.||||||.... .
T Consensus 472 ~~KTtLLD~iR~t~v-~~~EaGGITQ~IGa~~v~~~~--~~~~~~~~~~~~~~-~~~~p~i~fiDTPGhe~F-------~ 540 (1049)
T PRK14845 472 VHNTTLLDKIRKTRV-AKKEAGGITQHIGATEIPIDV--IKKICGPLLKLLKA-EIKIPGLLFIDTPGHEAF-------T 540 (1049)
T ss_pred cccccHHHHHhCCCc-ccccCCCceeccceEEEEecc--cccccccccccccc-cCCcCcEEEEECCCcHHH-------H
Confidence 369999999995443 333444566554333344332 111111 0000 111134999999996322 2
Q ss_pred hHHhhhhhhcceEEEEEeccC
Q 014539 143 NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 143 ~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......+.||++++|+|+++
T Consensus 541 ~lr~~g~~~aDivlLVVDa~~ 561 (1049)
T PRK14845 541 SLRKRGGSLADLAVLVVDINE 561 (1049)
T ss_pred HHHHhhcccCCEEEEEEECcc
Confidence 222334677999999999853
No 336
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.42 E-value=0.00046 Score=59.96 Aligned_cols=80 Identities=19% Similarity=0.253 Sum_probs=57.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|..+|...+||||++-.|.-+... ... .|.-.+...+++.. ..+.+||..|.-+
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~~~--~~i--pTvGFnvetVtykN-----------------~kfNvwdvGGqd~-- 73 (180)
T KOG0071|consen 17 EMRILMLGLDAAGKTTILYKLKLGQSV--TTI--PTVGFNVETVTYKN-----------------VKFNVWDVGGQDK-- 73 (180)
T ss_pred cceEEEEecccCCceehhhHHhcCCCc--ccc--cccceeEEEEEeee-----------------eEEeeeeccCchh--
Confidence 589999999999999999999833221 112 23445566666655 6689999999832
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+..-+..+.....++|+|+|..+
T Consensus 74 -----iRplWrhYy~gtqglIFV~Dsa~ 96 (180)
T KOG0071|consen 74 -----IRPLWRHYYTGTQGLIFVVDSAD 96 (180)
T ss_pred -----hhHHHHhhccCCceEEEEEeccc
Confidence 22345566778899999999754
No 337
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=97.27 E-value=1.5e-05 Score=72.20 Aligned_cols=159 Identities=16% Similarity=0.161 Sum_probs=95.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
.+-.++-++|+-+|||++++.+-+ .....-.-......+....++...+..+ ..++|||++|+.
T Consensus 23 ~hL~k~lVig~~~vgkts~i~ryv-~~nfs~~yRAtIgvdfalkVl~wdd~t~--------------vRlqLwdIagQe- 86 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVGKTSSIKRYV-HQNFSYHYRATIGVDFALKVLQWDDKTI--------------VRLQLWDIAGQE- 86 (229)
T ss_pred hhhhhhheeeeccccchhHHHHHH-HHHHHHHHHHHHhHHHHHHHhccChHHH--------------HHHHHhcchhhh-
Confidence 445799999999999999999887 3322111112222222233334444322 347899999995
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
..|+...-+.++|.+..+|+|++..... +|+.. |..... +.
T Consensus 87 ------rfg~mtrVyykea~~~~iVfdvt~s~tf-------e~~sk---------------------wkqdld-sk---- 127 (229)
T KOG4423|consen 87 ------RFGNMTRVYYKEAHGAFIVFDVTRSLTF-------EPVSK---------------------WKQDLD-SK---- 127 (229)
T ss_pred ------hhcceEEEEecCCcceEEEEEccccccc-------cHHHH---------------------HHHhcc-Cc----
Confidence 3445666678999999999998754321 11110 000000 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc-
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG- 292 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~- 292 (423)
-.||. -+.-|++..+|+.+-. ..+ .+..-.++..+++++|..
T Consensus 128 -------------~qLpn----------------------g~Pv~~vllankCd~e-~~a-~~~~~~~~d~f~kengf~g 170 (229)
T KOG4423|consen 128 -------------LQLPN----------------------GTPVPCVLLANKCDQE-KSA-KNEATRQFDNFKKENGFEG 170 (229)
T ss_pred -------------ccCCC----------------------CCcchheeccchhccC-hHh-hhhhHHHHHHHHhccCccc
Confidence 01222 2667788888998521 111 233457788888888764
Q ss_pred EEEechhhhHhh
Q 014539 293 RVTISAQVEAEL 304 (423)
Q Consensus 293 ~v~~Sa~~e~~i 304 (423)
+..+|+|-+.++
T Consensus 171 wtets~Kenkni 182 (229)
T KOG4423|consen 171 WTETSAKENKNI 182 (229)
T ss_pred eeeeccccccCh
Confidence 899999988777
No 338
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=97.27 E-value=0.00085 Score=64.64 Aligned_cols=25 Identities=20% Similarity=0.361 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
....|.+||+.|+||||++.+|++.
T Consensus 18 ~p~~ilVvGMAGSGKTTF~QrL~~h 42 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFMQRLNSH 42 (366)
T ss_pred CCcEEEEEecCCCCchhHHHHHHHH
Confidence 3467899999999999999999863
No 339
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.26 E-value=0.0015 Score=65.22 Aligned_cols=104 Identities=21% Similarity=0.323 Sum_probs=61.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCc--ceecCCCCccccceEEEEe------cCCcc--------chhhcc---------
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVA------VPDPR--------LHVLSG--------- 111 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~--~~vs~~p~tT~~~~~~~~~------~~~~r--------~~~l~~--------- 111 (423)
+-|.++|.=+.||||++|.|+++.- ..+++.|.|. .-...+. +|+.. +..|..
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd--~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf 136 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTD--RFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRF 136 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcc--eeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHH
Confidence 5699999999999999999995442 3455555432 2222221 12111 111111
Q ss_pred -c-cccccccCceEEEEecCCCcCCCCcccchhhHH---hh-hhhhcceEEEEEeccC
Q 014539 112 -L-SKSQKAVPASVEFVDIAGLVKGASQGEGLGNKF---LS-HIREVDSILQVVRCFE 163 (423)
Q Consensus 112 -~-~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~---l~-~ir~aD~il~Vvd~~~ 163 (423)
| -.|..+. .+|.+|||||+..+..+.-..+-.| ++ .+..||.|++++|+..
T Consensus 137 ~csqmp~~vL-e~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hK 193 (532)
T KOG1954|consen 137 MCSQLPNQVL-ESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHK 193 (532)
T ss_pred HHhcCChhhh-hheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhh
Confidence 1 1233332 3589999999987765422223222 22 3678999999999753
No 340
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=97.23 E-value=0.00022 Score=66.94 Aligned_cols=86 Identities=17% Similarity=0.176 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.-||.+.|++|+||||+=..+..+..+.-...|+.|+|..++-+.+-+ +-.+.+||..|..
T Consensus 4 ~kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG----------------nl~LnlwDcGgqe--- 64 (295)
T KOG3886|consen 4 KKKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG----------------NLVLNLWDCGGQE--- 64 (295)
T ss_pred cceEEEeccCCCCccccchhhhhhhhhhhhhccCCcceeeehhhhhhh----------------hheeehhccCCcH---
Confidence 458999999999999987766644445555678999988877765544 2347899999982
Q ss_pred CcccchhhHHh-----hhhhhcceEEEEEeccCC
Q 014539 136 SQGEGLGNKFL-----SHIREVDSILQVVRCFED 164 (423)
Q Consensus 136 ~~~~~l~~~~l-----~~ir~aD~il~Vvd~~~~ 164 (423)
...+.++ ...++.+++++|+|++.+
T Consensus 65 ----~fmen~~~~q~d~iF~nV~vli~vFDves~ 94 (295)
T KOG3886|consen 65 ----EFMENYLSSQEDNIFRNVQVLIYVFDVESR 94 (295)
T ss_pred ----HHHHHHHhhcchhhheeheeeeeeeeccch
Confidence 2222222 347889999999998754
No 341
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.22 E-value=0.0014 Score=64.90 Aligned_cols=92 Identities=26% Similarity=0.356 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCcc-----ccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCT-----IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT-----~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
.+.+|++|.-.+|||||..+|+.-. .+.-...|+.| .|--...+.++.++. | |+. .+-|+.|+|+|
T Consensus 7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~par--L-----pq~-e~lq~tlvDCP 78 (522)
T KOG0461|consen 7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPAR--L-----PQG-EQLQFTLVDCP 78 (522)
T ss_pred eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccc--c-----Ccc-ccceeEEEeCC
Confidence 3789999999999999999998321 12222234333 222222222322110 0 111 24678999999
Q ss_pred CCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
|- .++.+..+....--|+.++|+|+.
T Consensus 79 GH-------asLIRtiiggaqiiDlm~lviDv~ 104 (522)
T KOG0461|consen 79 GH-------ASLIRTIIGGAQIIDLMILVIDVQ 104 (522)
T ss_pred Cc-------HHHHHHHHhhhheeeeeeEEEehh
Confidence 96 345556666666679999999963
No 342
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.18 E-value=0.0011 Score=68.71 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+..|+++|.+||||||+...|+
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA 121 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLA 121 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 343
>PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional
Probab=97.17 E-value=0.00055 Score=75.05 Aligned_cols=63 Identities=17% Similarity=0.116 Sum_probs=52.7
Q ss_pred CCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014539 338 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 417 (423)
Q Consensus 338 ~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 417 (423)
+-|.|||- .-+-..+|+|||+.|+|..||||+...-+-|+|= |+ .+.-+|.|++||+|
T Consensus 386 d~v~VfTP---~G~v~~LP~GaT~lDFAY~iHt~iG~~c~gAkVN-----------------g~--~vpL~~~L~~Gd~V 443 (702)
T PRK11092 386 DEIYVFTP---EGRIVELPAGATPVDFAYAVHTDIGHACVGARVD-----------------RQ--PYPLSQPLTSGQTV 443 (702)
T ss_pred ceEEEECC---CCCEEeCCCCCchhhhhHhhCchhhceeEEEEEC-----------------CE--ECCCCccCCCCCEE
Confidence 56888883 2256789999999999999999998888888854 44 58999999999999
Q ss_pred EEEec
Q 014539 418 LFRFN 422 (423)
Q Consensus 418 ~~~f~ 422 (423)
+|..+
T Consensus 444 eIiT~ 448 (702)
T PRK11092 444 EIITA 448 (702)
T ss_pred EEEeC
Confidence 99754
No 344
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.16 E-value=0.016 Score=60.76 Aligned_cols=110 Identities=17% Similarity=0.235 Sum_probs=60.9
Q ss_pred hCcceEEeeeccccccC--CCC---CCcchH----HHHHHHhhcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCCh
Q 014539 255 TMKPIIYVANVAESDLA--DPG---SNPHVN----EVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESG 325 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~--~~~---~~~~~~----~i~~~~~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~ 325 (423)
..-|+++||.++|. +. +.+ .++.++ -++.+|-.+|...+.+|++.+.++
T Consensus 195 lGipi~VV~tksD~-~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~--------------------- 252 (472)
T PF05783_consen 195 LGIPIVVVCTKSDK-IETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNL--------------------- 252 (472)
T ss_pred cCcceEEEEecccH-HHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccH---------------------
Confidence 46799999999963 11 110 122233 345667778988898998776444
Q ss_pred hhHHHHHHHhhhCCEEEecCCC--CCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhC
Q 014539 326 LGNLIRSTYSLLGLRTYFTSGE--KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAG 391 (423)
Q Consensus 326 ~~~li~~~~~~L~li~~fT~g~--~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~ 391 (423)
+.|.+-+...|- -.-|+... .+.++..||.|+--...-+.+|..|..- .++ -.|++.+.-+
T Consensus 253 -~~L~~yi~h~l~-~~~f~~~~~vv~~d~ifIP~GwDs~~kI~il~e~f~~~--~~~-~~~~~~i~~p 315 (472)
T PF05783_consen 253 -DLLYKYILHRLY-GFPFKTPAQVVERDAIFIPAGWDSWGKIRILRENFDTE--KPE-DPYEDIIPKP 315 (472)
T ss_pred -HHHHHHHHHHhc-cCCCCCCceeecccccccCCCCCCHHhcCccccccccc--cCC-CcccccccCC
Confidence 222222222111 11223222 2558999999987777777777766421 122 3455555544
No 345
>COG0317 SpoT Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]
Probab=97.10 E-value=0.0007 Score=73.36 Aligned_cols=63 Identities=25% Similarity=0.212 Sum_probs=52.4
Q ss_pred CCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEE
Q 014539 338 GLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVM 417 (423)
Q Consensus 338 ~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii 417 (423)
+-+.+|| |+. +-..+|+|||+.|+|+.||||+...-+-|+|= | |.+.-+|.|+-||+|
T Consensus 387 d~VyvfT--PkG-~vi~LP~GatplDFAY~vHt~iG~~c~gAkVn-----------------G--~ivpl~~~Lk~Gd~V 444 (701)
T COG0317 387 DRVYVFT--PKG-KVIDLPKGATPLDFAYAVHTDIGHRCIGAKVN-----------------G--RIVPLTTKLQTGDQV 444 (701)
T ss_pred ceEEEEC--CCC-CEEeCCCCCcchhhhhhhhchhcceeeEEEEC-----------------C--EEeccceecCCCCEE
Confidence 5677887 333 78899999999999999999997777777743 5 369999999999999
Q ss_pred EEEec
Q 014539 418 LFRFN 422 (423)
Q Consensus 418 ~~~f~ 422 (423)
+|-.+
T Consensus 445 EIit~ 449 (701)
T COG0317 445 EIITS 449 (701)
T ss_pred EEEeC
Confidence 99764
No 346
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=97.04 E-value=0.0017 Score=62.70 Aligned_cols=88 Identities=22% Similarity=0.115 Sum_probs=53.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc-ce-ecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQ-AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~-~~-vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
.+.++++|.+|||||+|+|.++.... +. ++..|+-|...+...+ ...+.++|.||+-.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v--------------------~~~~~~vDlPG~~~ 195 (320)
T KOG2486|consen 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV--------------------GKSWYEVDLPGYGR 195 (320)
T ss_pred CceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec--------------------cceEEEEecCCccc
Confidence 47999999999999999999994322 22 3337777766555443 13589999999522
Q ss_pred C--CCc-ccchhhHHhhhh---hhcceEEEEEeccC
Q 014539 134 G--ASQ-GEGLGNKFLSHI---REVDSILQVVRCFE 163 (423)
Q Consensus 134 ~--~~~-~~~l~~~~l~~i---r~aD~il~Vvd~~~ 163 (423)
. ... .+.+++-...++ ++---++..+|++-
T Consensus 196 a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv 231 (320)
T KOG2486|consen 196 AGYGFELPADWDKFTKSYLLERENLVRVFLLVDASV 231 (320)
T ss_pred ccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccC
Confidence 1 111 223333333333 23334456667753
No 347
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0019 Score=56.51 Aligned_cols=83 Identities=22% Similarity=0.287 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|-+.|.-++||+|++=.|--... +.+.| |+..++..+++.+ -.+.+||.-|...-+
T Consensus 18 e~rililgldGaGkttIlyrlqvgev--vttkP--tigfnve~v~yKN-----------------Lk~~vwdLggqtSir 76 (182)
T KOG0072|consen 18 EMRILILGLDGAGKTTILYRLQVGEV--VTTKP--TIGFNVETVPYKN-----------------LKFQVWDLGGQTSIR 76 (182)
T ss_pred ceEEEEeeccCCCeeEEEEEcccCcc--cccCC--CCCcCcccccccc-----------------ccceeeEccCccccc
Confidence 47899999999999998877752222 22333 2333444454433 348899999874322
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDND 166 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~ 166 (423)
--+..+..+.|++|+|||.++...
T Consensus 77 -------PyWRcYy~dt~avIyVVDssd~dr 100 (182)
T KOG0072|consen 77 -------PYWRCYYADTDAVIYVVDSSDRDR 100 (182)
T ss_pred -------HHHHHHhcccceEEEEEeccchhh
Confidence 245677899999999999887654
No 348
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.97 E-value=0.00027 Score=67.68 Aligned_cols=18 Identities=28% Similarity=0.573 Sum_probs=16.0
Q ss_pred EEecCCCCccHHHHHHhh
Q 014539 61 IVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 61 ivG~pnvGKSTL~N~Ltg 78 (423)
|+|.||+||||+.+++..
T Consensus 1 ViGpaGSGKTT~~~~~~~ 18 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSE 18 (238)
T ss_dssp -EESTTSSHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 689999999999999984
No 349
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.74 E-value=0.0019 Score=65.70 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.++++|.|||||||++..|.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~ 159 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAA 159 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 350
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=96.74 E-value=0.004 Score=66.29 Aligned_cols=90 Identities=21% Similarity=0.344 Sum_probs=58.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecC-------CC---------CccccceEEEEecCCccchhhccccccccccC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAAN-------FP---------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~-------~p---------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
..||++|.-..|||+|+..|.++.....+. |+ ++++..+.-.+-..|.+ ...
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~------------~KS 196 (971)
T KOG0468|consen 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSK------------GKS 196 (971)
T ss_pred EEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCc------------Cce
Confidence 579999999999999999999654432210 11 22222222222222211 112
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
.-+.++||||-+...+ .....++.+|++++|+|+.+..
T Consensus 197 ~l~nilDTPGHVnF~D-------E~ta~l~~sDgvVlvvDv~EGV 234 (971)
T KOG0468|consen 197 YLMNILDTPGHVNFSD-------ETTASLRLSDGVVLVVDVAEGV 234 (971)
T ss_pred eeeeeecCCCcccchH-------HHHHHhhhcceEEEEEEcccCc
Confidence 3478999999876544 6677889999999999997764
No 351
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.013 Score=60.07 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=52.3
Q ss_pred EEEEEecCCCCccHHHHHHh--hcCcce-------------ecCC------CCccccceEEEEecCCccchhhccccccc
Q 014539 58 RAGIVGLPNVGKSTLFNAVV--ENGKAQ-------------AANF------PFCTIEPNVGIVAVPDPRLHVLSGLSKSQ 116 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt--g~~~~~-------------vs~~------p~tT~~~~~~~~~~~~~r~~~l~~~~~~~ 116 (423)
..+||-.|-+|||||--.|. |+.... .|++ -+..+....-.+++.+
T Consensus 14 TFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~------------- 80 (528)
T COG4108 14 TFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYAD------------- 80 (528)
T ss_pred ceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCC-------------
Confidence 57999999999999988876 222111 1111 0111111222234443
Q ss_pred cccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 117 KAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.|+||||-... .+.+.+.+..+|..+.|+|+..
T Consensus 81 ----~~iNLLDTPGHeDF-------SEDTYRtLtAvDsAvMVIDaAK 116 (528)
T COG4108 81 ----CLVNLLDTPGHEDF-------SEDTYRTLTAVDSAVMVIDAAK 116 (528)
T ss_pred ----eEEeccCCCCcccc-------chhHHHHHHhhheeeEEEeccc
Confidence 56889999997543 3467777888999999999853
No 352
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=96.64 E-value=0.012 Score=60.18 Aligned_cols=83 Identities=23% Similarity=0.252 Sum_probs=62.7
Q ss_pred EEEEEecCCCCccHHHHHHhhcCc--ceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGK--AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~--~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
-|+..|.---|||||+.+++|... .+-...-++|+|.-....+.++ ..+.|+|+||..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d-----------------~~~~fIDvpgh~--- 61 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLED-----------------GVMGFIDVPGHP--- 61 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCC-----------------CceEEeeCCCcH---
Confidence 467778888899999999997432 3344567899988777777776 358999999983
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.+....+..+...|..++|||+.+.
T Consensus 62 ----~~i~~miag~~~~d~alLvV~~deG 86 (447)
T COG3276 62 ----DFISNLLAGLGGIDYALLVVAADEG 86 (447)
T ss_pred ----HHHHHHHhhhcCCceEEEEEeCccC
Confidence 3334556667778999999998543
No 353
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.61 E-value=0.0014 Score=59.33 Aligned_cols=42 Identities=33% Similarity=0.357 Sum_probs=30.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEE
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~ 98 (423)
..|+|+|.+++|||||.+.|.+.........+.+|+.|..+.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~ 43 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE 43 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC
Confidence 358999999999999999999544333444456777665543
No 354
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.60 E-value=0.0051 Score=54.50 Aligned_cols=20 Identities=50% Similarity=0.919 Sum_probs=18.6
Q ss_pred EEEEecCCCCccHHHHHHhh
Q 014539 59 AGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg 78 (423)
|+++|.+++||||++..+..
T Consensus 2 i~~~G~~GsGKTt~~~~l~~ 21 (148)
T cd03114 2 IGITGVPGAGKSTLIDALIT 21 (148)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 78999999999999999984
No 355
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.0019 Score=67.49 Aligned_cols=76 Identities=22% Similarity=0.346 Sum_probs=53.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
++-|++||.|++|||||+..|+ .. +...|++-..|.+++-... ...+.|+.+|.=
T Consensus 69 PfIvavvGPpGtGKsTLirSlV-rr------~tk~ti~~i~GPiTvvsgK--------------~RRiTflEcp~D---- 123 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLV-RR------FTKQTIDEIRGPITVVSGK--------------TRRITFLECPSD---- 123 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHH-HH------HHHhhhhccCCceEEeecc--------------eeEEEEEeChHH----
Confidence 4678899999999999999998 32 2234566666665443211 135889988832
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+++....+-||++|+++|+.
T Consensus 124 ------l~~miDvaKIaDLVlLlIdgn 144 (1077)
T COG5192 124 ------LHQMIDVAKIADLVLLLIDGN 144 (1077)
T ss_pred ------HHHHHhHHHhhheeEEEeccc
Confidence 246777788899999999963
No 356
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=96.54 E-value=0.018 Score=57.48 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=39.2
Q ss_pred hhCcceEEeeeccccccCCCCCCcchHHHH----HHHhhcC---CcEEEechhhhHhhcCCCh-------HHHHHHHHHc
Q 014539 254 LTMKPIIYVANVAESDLADPGSNPHVNEVM----NLASDLQ---SGRVTISAQVEAELTELPS-------EERVEYLASL 319 (423)
Q Consensus 254 ~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~----~~~~~~~---~~~v~~Sa~~e~~i~~l~~-------ee~~~~l~~~ 319 (423)
+--+.+++++||+ |+.+= +++..++|. .++.+.+ ..+||+||..+.|+..-++ +.-.++|+..
T Consensus 137 LGIrhvvvAVNKm--DLvdy-~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~~s~~mpWY~GptLLe~LE~v 213 (431)
T COG2895 137 LGIRHVVVAVNKM--DLVDY-SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVSKSENMPWYKGPTLLEILETV 213 (431)
T ss_pred hCCcEEEEEEeee--ccccc-CHHHHHHHHHHHHHHHHHcCCCcceEEechhccCCcccccccCCCcccCccHHHHHhhc
Confidence 3567788999999 45432 233444443 3444433 4689999999999864322 2334566555
Q ss_pred CC
Q 014539 320 GV 321 (423)
Q Consensus 320 g~ 321 (423)
-+
T Consensus 214 ~i 215 (431)
T COG2895 214 EI 215 (431)
T ss_pred cc
Confidence 44
No 357
>cd01616 TGS The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is structurally similar to ubiquitin. TGS is a small domain of about 50 amino acid residues with a predominantly beta-sheet structure. There is no direct information on the function of the TGS domain, but its presence in two types of regulatory proteins (the GTPases and guanosine polyphosphate phosphohydrolases/synthetases) suggests a ligand (most likely nucleotide)-binding, regulatory role.
Probab=96.52 E-value=0.0046 Score=44.52 Aligned_cols=51 Identities=33% Similarity=0.393 Sum_probs=44.7
Q ss_pred ceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 351 raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
++|.+++|+|+.+++..+|.++.+.++.|.|.+ +.++.+|.+++||.|+|-
T Consensus 9 ~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~vn~-------------------~~~~l~~~l~~~~~i~~i 59 (60)
T cd01616 9 SAVELPKGATAMDFALKIHTDLGKGFIGALVNG-------------------QLVDLSYTLQDGDTVSIV 59 (60)
T ss_pred CEEEcCCCCCHHHHHHHHHHHHHhheEEEEECC-------------------EECCCCcCcCCCCEEEEe
Confidence 688899999999999999999999999988664 247899999999998874
No 358
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.51 E-value=0.00078 Score=62.64 Aligned_cols=21 Identities=29% Similarity=0.427 Sum_probs=19.0
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.|++||.+||||||.+-.|..
T Consensus 3 vi~lvGptGvGKTTt~aKLAa 23 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAA 23 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCchHhHHHHHHH
Confidence 589999999999999998883
No 359
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=96.47 E-value=0.0073 Score=59.37 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
....-|.|+|.||+|||||++.+.+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~ 126 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLM 126 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999988884
No 360
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=96.45 E-value=0.011 Score=60.94 Aligned_cols=84 Identities=20% Similarity=0.195 Sum_probs=54.4
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecC---------------CCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAAN---------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~---------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
.|+||-.---|||||...|..+...--.+ .-+.|+-...-.+.+. ...
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~-----------------~~~ 69 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYN-----------------GTR 69 (603)
T ss_pred eeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecC-----------------CeE
Confidence 58888888899999999999543321111 1122222111122232 366
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
|.++||||-.... -..-+-+.-+|.++++|||++.+
T Consensus 70 INIvDTPGHADFG-------GEVERvl~MVDgvlLlVDA~EGp 105 (603)
T COG1217 70 INIVDTPGHADFG-------GEVERVLSMVDGVLLLVDASEGP 105 (603)
T ss_pred EEEecCCCcCCcc-------chhhhhhhhcceEEEEEEcccCC
Confidence 9999999985443 34555677799999999999865
No 361
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.43 E-value=0.01 Score=59.31 Aligned_cols=23 Identities=26% Similarity=0.419 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.||+||||++..|++
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~ 136 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAH 136 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45799999999999999999985
No 362
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=96.39 E-value=0.0084 Score=65.71 Aligned_cols=83 Identities=20% Similarity=0.199 Sum_probs=56.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCC-------------------CccccceEEEEecCCccchhhcccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-------------------FCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-------------------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~ 117 (423)
..|||+|.--+|||||.-+|. ......+. + +.|+......+...+
T Consensus 11 RNigI~aHidaGKTTltE~lL-~~tG~i~k-~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~-------------- 74 (697)
T COG0480 11 RNIGIVAHIDAGKTTLTERIL-FYTGIISK-IGEVHDGAATMDWMEQEQERGITITSAATTLFWKG-------------- 74 (697)
T ss_pred eEEEEEeccCCChHHHHHHHH-HHcCCcCC-CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcC--------------
Confidence 579999999999999999987 32222221 2 222222111222211
Q ss_pred ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
...|.|+||||.+.... ..-+.+|-+|+.+.|+|+-+.
T Consensus 75 --~~~iNlIDTPGHVDFt~-------EV~rslrvlDgavvVvdaveG 112 (697)
T COG0480 75 --DYRINLIDTPGHVDFTI-------EVERSLRVLDGAVVVVDAVEG 112 (697)
T ss_pred --ceEEEEeCCCCccccHH-------HHHHHHHhhcceEEEEECCCC
Confidence 26799999999986654 677889999999999998654
No 363
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.0065 Score=62.17 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.+||||||++..|+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~ 263 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAW 263 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHH
Confidence 35899999999999999999984
No 364
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.0078 Score=62.26 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.|++||.+||||||+++.|++.
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999853
No 365
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.25 E-value=0.0045 Score=59.12 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
=-|+|||.+|||||||+|.++|-.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999999744
No 366
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.20 E-value=0.0041 Score=54.27 Aligned_cols=39 Identities=28% Similarity=0.347 Sum_probs=28.0
Q ss_pred EEEEecCCCCccHHHHHHhhcCc-ceecCCCCccccceEE
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVG 97 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~-~~vs~~p~tT~~~~~~ 97 (423)
|+|+|.+++|||||++.|.+.-. ......+.||+.|..+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~ 41 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG 41 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCC
Confidence 68999999999999999994321 1233456677766544
No 367
>PRK14974 cell division protein FtsY; Provisional
Probab=96.12 E-value=0.008 Score=60.49 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.||+||||++..|+.
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~ 162 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY 162 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 46799999999999998888873
No 368
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.12 E-value=0.0022 Score=65.23 Aligned_cols=23 Identities=22% Similarity=0.229 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.+||||||++..|+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999983
No 369
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.05 E-value=0.013 Score=57.26 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
...|+++|.||+||||+...|+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~ 94 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLAN 94 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 35799999999999999888873
No 370
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.04 E-value=0.041 Score=53.79 Aligned_cols=104 Identities=21% Similarity=0.214 Sum_probs=68.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc----------------eecCCCCccccceEEEEecCCccchhhccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA----------------QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~----------------~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
....||.||.-+-|||||..|+|+ ..+ +-...-+.|+.+...-....+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~-~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~--------------- 74 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITT-VLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETAN--------------- 74 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHH-HHHhhccccccchhhhccCchHhhcCceeccceeEEecCC---------------
Confidence 347899999999999999999995 211 111122556555444444333
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcc-----------------eeeecccccCCcchH
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND-----------------IVHVNGKVDPKSDVD 181 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~-----------------~~~~~~~~dp~~d~~ 181 (423)
.+.-.+|+||-.. ...-.+....+.|..|+||.|.+.+- ++-..|+.|-++|-+
T Consensus 75 --rhyahVDcPGHaD-------YvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~e 145 (394)
T COG0050 75 --RHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEE 145 (394)
T ss_pred --ceEEeccCCChHH-------HHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHH
Confidence 5688999999732 22233444577899999999877542 344568888887655
Q ss_pred HH
Q 014539 182 VI 183 (423)
Q Consensus 182 ~i 183 (423)
.+
T Consensus 146 ll 147 (394)
T COG0050 146 LL 147 (394)
T ss_pred HH
Confidence 43
No 371
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.01 E-value=0.0045 Score=57.02 Aligned_cols=43 Identities=23% Similarity=0.162 Sum_probs=32.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~ 99 (423)
.-|.|+|.||||||||.++|...........+.||+.|..|-.
T Consensus 5 ~~ivl~GpsG~GK~tl~~~l~~~~~~~~~~v~~TTR~~r~gE~ 47 (186)
T PRK14737 5 KLFIISSVAGGGKSTIIQALLEEHPDFLFSISCTTRAPRPGDE 47 (186)
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCCccccccCccCCCCCCCCC
Confidence 4589999999999999999984432234456889988766643
No 372
>PRK00300 gmk guanylate kinase; Provisional
Probab=95.99 E-value=0.0056 Score=56.63 Aligned_cols=44 Identities=27% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEE
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGI 98 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~ 98 (423)
++.-|+|+|.+++|||||.+.|.+.........+.+|+.|..|.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge 47 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE 47 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC
Confidence 44679999999999999999999543323334456777766554
No 373
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.93 E-value=0.0073 Score=62.77 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..++++|.+||||||++..|..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~ 243 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAA 243 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999888873
No 374
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=95.91 E-value=0.0053 Score=56.19 Aligned_cols=23 Identities=35% Similarity=0.419 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-.|+|+|.+++|||||+|.+.|-
T Consensus 26 e~vAi~GpSGaGKSTLLnLIAGF 48 (231)
T COG3840 26 EIVAILGPSGAGKSTLLNLIAGF 48 (231)
T ss_pred cEEEEECCCCccHHHHHHHHHhc
Confidence 47999999999999999999963
No 375
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.049 Score=52.84 Aligned_cols=29 Identities=31% Similarity=0.393 Sum_probs=23.9
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~ 82 (423)
..-.+.|..||-++.|||||++.|. +...
T Consensus 39 ~GF~FNilCvGETg~GKsTLmdtLF-Nt~f 67 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKSTLMDTLF-NTKF 67 (406)
T ss_pred cCceEEEEEeccCCccHHHHHHHHh-cccc
Confidence 3455789999999999999999999 4443
No 376
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=95.77 E-value=0.33 Score=48.21 Aligned_cols=256 Identities=16% Similarity=0.178 Sum_probs=126.6
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
+...+-.|.++|..++|||||+..|-|... .+++.-.+ ...+.+.|+-.|.+.. ..+.++|=--.
T Consensus 48 klpsgk~VlvlGdn~sGKtsLi~klqg~e~----~KkgsgLe--Y~yl~V~de~RDd~tr---------~~VWiLDGd~~ 112 (473)
T KOG3905|consen 48 KLPSGKNVLVLGDNGSGKTSLISKLQGSET----VKKGSGLE--YLYLHVHDEDRDDLTR---------CNVWILDGDLY 112 (473)
T ss_pred cCCCCCeEEEEccCCCchhHHHHHhhcccc----cCCCCCcc--eEEEecccccchhhhh---------cceEEecCchh
Confidence 444567899999999999999999986442 23443332 2334555554443211 23445553211
Q ss_pred cCCCCcccchhhHHhhhhhhcc-eEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccch
Q 014539 132 VKGASQGEGLGNKFLSHIREVD-SILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDS 210 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD-~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~ 210 (423)
+ .++..-.+....-++ ++|+++|.+.+... ++.+++ |- ..+....+++..-+ .
T Consensus 113 ----h--~~LLk~al~ats~aetlviltasms~Pw~~------------lesLqk----Wa-~Vl~ehidkl~i~~---e 166 (473)
T KOG3905|consen 113 ----H--KGLLKFALPATSLAETLVILTASMSNPWTL------------LESLQK----WA-SVLREHIDKLKIPP---E 166 (473)
T ss_pred ----h--hhHHhhcccccCccceEEEEEEecCCcHHH------------HHHHHH----HH-HHHHHHHHhccCCH---H
Confidence 1 233333344443444 45566676544221 111110 00 11111122211100 0
Q ss_pred hhhhhHHHHHHHHHHHHHHhcCCCC-----CCCCC---ChHHHHHHH----HHhhhhCcceEEeeeccccc-cCCCC---
Q 014539 211 QSKLKDAEKAALEKIQQALMDGKPA-----RSVTL---NDFERDSIK----QLCLLTMKPIIYVANVAESD-LADPG--- 274 (423)
Q Consensus 211 sa~~~~~~~~ll~~i~~~L~~~~~~-----~~~~~---t~~e~e~ir----~~~~~t~kpi~~v~N~~~~d-~~~~~--- 274 (423)
........+....+++.+.+... +...+ +.+|...+- .+..-..-|+++|+.|++-- ..+.+
T Consensus 167 --e~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~ey 244 (473)
T KOG3905|consen 167 --EMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEY 244 (473)
T ss_pred --HHHHHHHHHHHHHHHhcCccccCCCCcccccccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchh
Confidence 11123344555566666544322 22111 111211110 12223678999999999530 00110
Q ss_pred CCcchHH----HHHHHhhcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCC--
Q 014539 275 SNPHVNE----VMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEK-- 348 (423)
Q Consensus 275 ~~~~~~~----i~~~~~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~-- 348 (423)
.++.++. ++++|-..|...+.+|++-+.+|.-| - ..+....| |+ =||..--
T Consensus 245 rDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidll---------y---------KYivhr~y---G~--~fttpAlVV 301 (473)
T KOG3905|consen 245 RDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLL---------Y---------KYIVHRSY---GF--PFTTPALVV 301 (473)
T ss_pred hHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHH---------H---------HHHHHHhc---Cc--ccCCcceEe
Confidence 1233444 44667778989999999877666322 0 11222222 21 1443222
Q ss_pred CcceEEecCCCChhhhhhhcchhhh
Q 014539 349 ETKAWTIRAGMTAPQAAGVIHSDFE 373 (423)
Q Consensus 349 e~raw~i~~gsta~~~A~~IHsD~~ 373 (423)
|.+|..||.|+--..=-+.||..|.
T Consensus 302 EkdaVfIPAGWD~eKKI~Il~En~~ 326 (473)
T KOG3905|consen 302 EKDAVFIPAGWDNEKKIDILHENFP 326 (473)
T ss_pred ecceeEeccCCCccccchhhhhcCC
Confidence 6689999999988888888888774
No 377
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=95.72 E-value=0.0066 Score=52.18 Aligned_cols=25 Identities=36% Similarity=0.340 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||+++|+|.
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~ 34 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGL 34 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEccCCCccccceeeeccc
Confidence 3457999999999999999999954
No 378
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.68 E-value=0.0072 Score=50.74 Aligned_cols=21 Identities=43% Similarity=0.469 Sum_probs=19.3
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.|+|.|.|+|||||+.+.|..
T Consensus 1 vI~I~G~~gsGKST~a~~La~ 21 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAE 21 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999999999993
No 379
>PRK14738 gmk guanylate kinase; Provisional
Probab=95.64 E-value=0.009 Score=55.80 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=30.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEE
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG 97 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~ 97 (423)
..+.-|.|+|.|+||||||+++|........-..+.||+.+..+
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~~~~~~~~~ttr~~r~~ 54 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKLPFHFVVTATTRPKRPG 54 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCCcccccccccCCCCCCC
Confidence 34567899999999999999999833222224456677665433
No 380
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.61 E-value=0.025 Score=50.82 Aligned_cols=20 Identities=35% Similarity=0.411 Sum_probs=17.1
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-++++|.|++||||+.-.+.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36899999999999977766
No 381
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.56 E-value=0.0064 Score=62.68 Aligned_cols=22 Identities=23% Similarity=0.197 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..++++|.+||||||+...|..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~ 245 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAA 245 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999983
No 382
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=95.53 E-value=0.015 Score=55.05 Aligned_cols=21 Identities=33% Similarity=0.534 Sum_probs=17.4
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+-..+||.|++||||..|-++
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~ 23 (290)
T KOG1533|consen 3 FGQVVIGPPGSGKSTYCNGMS 23 (290)
T ss_pred cceEEEcCCCCCccchhhhHH
Confidence 345799999999999877665
No 383
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=95.50 E-value=0.0075 Score=55.24 Aligned_cols=44 Identities=32% Similarity=0.355 Sum_probs=33.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV 99 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~ 99 (423)
++.-++|.|++|||||||+++|.... ..--....||+.|-.|-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~gEv 46 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPGEV 46 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc-CeEEEEEeccCCCCCCCc
Confidence 45678999999999999999999444 333345678988877654
No 384
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.45 E-value=0.021 Score=51.20 Aligned_cols=25 Identities=40% Similarity=0.615 Sum_probs=22.3
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+.++|+|-|+|+||||||+..+..
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e 27 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAE 27 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHH
Confidence 4668999999999999999988873
No 385
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.44 E-value=0.026 Score=55.11 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.+++++|.+++||||++..|++
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~ 97 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAW 97 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHH
Confidence 46999999999999999999984
No 386
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.39 E-value=0.025 Score=44.60 Aligned_cols=68 Identities=19% Similarity=0.122 Sum_probs=44.6
Q ss_pred EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCcc
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQG 138 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~ 138 (423)
+.+.|.+++||||+.+.|. ...+. ..+. . ..+.| ++++|+||......
T Consensus 2 ~~~~g~~G~Gktt~~~~l~-~~l~~-~g~~-------v--~~~~d-------------------~iivD~~~~~~~~~-- 49 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLA-AALAK-RGKR-------V--LLIDD-------------------YVLIDTPPGLGLLV-- 49 (99)
T ss_pred EEEECCCCCCHHHHHHHHH-HHHHH-CCCe-------E--EEECC-------------------EEEEeCCCCccchh--
Confidence 6788999999999999998 33322 1111 1 11112 89999999753211
Q ss_pred cchhhHHhhhhhhcceEEEEEecc
Q 014539 139 EGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 139 ~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
......+..+|.++++++..
T Consensus 50 ----~~~~~~~~~~~~vi~v~~~~ 69 (99)
T cd01983 50 ----LLCLLALLAADLVIIVTTPE 69 (99)
T ss_pred ----hhhhhhhhhCCEEEEecCCc
Confidence 00256677899999999863
No 387
>PRK07261 topology modulation protein; Provisional
Probab=95.30 E-value=0.011 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++|+|+|.||+|||||...|.
T Consensus 1 ~ri~i~G~~GsGKSTla~~l~ 21 (171)
T PRK07261 1 MKIAIIGYSGSGKSTLARKLS 21 (171)
T ss_pred CEEEEEcCCCCCHHHHHHHHH
Confidence 479999999999999999997
No 388
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.28 E-value=0.071 Score=49.25 Aligned_cols=22 Identities=36% Similarity=0.685 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|++.|.|++|||||+-.++.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~ 35 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLR 35 (202)
T ss_pred EEEEecCCCCcCHHHHHHHHHH
Confidence 6899999999999999988874
No 389
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=95.27 E-value=0.012 Score=52.95 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.5
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.++++|++|+|||||+++|..
T Consensus 3 vi~i~G~~gsGKTTli~~L~~ 23 (159)
T cd03116 3 VIGFVGYSGSGKTTLLEKLIP 23 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999993
No 390
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.25 E-value=0.051 Score=56.65 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+..|.++|.|++||||+...|.
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA 116 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLA 116 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHH
Confidence 4579999999999999988886
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.23 E-value=0.031 Score=59.31 Aligned_cols=24 Identities=21% Similarity=0.273 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.|+|+|.+|+||||++..|..
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa 372 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQ 372 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999984
No 392
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=95.21 E-value=0.12 Score=60.37 Aligned_cols=91 Identities=19% Similarity=0.145 Sum_probs=47.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
+=-.|||.||+||||+++.- |..- ......+ .....+ +.+.+ .|.. +...+.+++||+|-.-...
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~-pl~~~~~--~~~~~~---~~~t~---~c~w-----wf~~~avliDtaG~y~~~~ 176 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKF-PLAERLG--AAALRG---VGGTR---NCDW-----WFTDEAVLIDTAGRYTTQD 176 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCC-cCchhhc--cccccC---CCCCc---ccce-----EecCCEEEEcCCCccccCC
Confidence 45689999999999999987 3321 1111000 000000 00000 0000 0113588999999642211
Q ss_pred ---c-ccchhhHHhhhhh------hcceEEEEEecc
Q 014539 137 ---Q-GEGLGNKFLSHIR------EVDSILQVVRCF 162 (423)
Q Consensus 137 ---~-~~~l~~~~l~~ir------~aD~il~Vvd~~ 162 (423)
. ....-..|+..++ -.|.||++||+.
T Consensus 177 ~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~ 212 (1169)
T TIGR03348 177 SDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLA 212 (1169)
T ss_pred CcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHH
Confidence 1 1222356666653 369999999974
No 393
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=95.19 E-value=0.077 Score=54.07 Aligned_cols=25 Identities=28% Similarity=0.212 Sum_probs=21.0
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
....+|.+||..++|||||.+-|++
T Consensus 71 ~~~~~vmvvG~vDSGKSTLt~~LaN 95 (398)
T COG1341 71 GKVGVVMVVGPVDSGKSTLTTYLAN 95 (398)
T ss_pred cCCcEEEEECCcCcCHHHHHHHHHH
Confidence 4457999999999999999777764
No 394
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=95.17 E-value=0.089 Score=45.76 Aligned_cols=64 Identities=20% Similarity=0.134 Sum_probs=40.3
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHH
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTY 334 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~ 334 (423)
..+|+++++||.| +.. .....+..++++..+..++++||..+... ..-.|..+.|--.+++...
T Consensus 41 ~~k~~iivlNK~D--L~~---~~~~~~~~~~~~~~~~~ii~iSa~~~~~~-----------~~~~G~~~vGKstlin~l~ 104 (141)
T cd01857 41 PRKKNILLLNKAD--LLT---EEQRKAWAEYFKKEGIVVVFFSALKENAT-----------IGLVGYPNVGKSSLINALV 104 (141)
T ss_pred CCCcEEEEEechh--cCC---HHHHHHHHHHHHhcCCeEEEEEecCCCcE-----------EEEECCCCCCHHHHHHHHh
Confidence 3689999999995 432 22334455555566678999999876531 1123555666666776654
No 395
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.15 E-value=0.011 Score=55.93 Aligned_cols=25 Identities=36% Similarity=0.327 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+=-|+|+|.+|+|||||+|.|.|-.
T Consensus 31 Ge~vaI~GpSGSGKSTLLniig~ld 55 (226)
T COG1136 31 GEFVAIVGPSGSGKSTLLNLLGGLD 55 (226)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3469999999999999999998533
No 396
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.09 E-value=0.044 Score=60.54 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-.|++||.+||||||++..|++
T Consensus 186 ~Vi~lVGpnGvGKTTTiaKLA~ 207 (767)
T PRK14723 186 GVLALVGPTGVGKTTTTAKLAA 207 (767)
T ss_pred eEEEEECCCCCcHHHHHHHHHh
Confidence 4689999999999999999995
No 397
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=95.09 E-value=0.04 Score=45.07 Aligned_cols=70 Identities=14% Similarity=0.074 Sum_probs=43.7
Q ss_pred EEEEe-cCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 59 AGIVG-LPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 59 I~ivG-~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
|++.| ..|+||||+--.|. ...+. ...+ ...+..+. . ..++++|+|+...
T Consensus 2 i~~~~~kgG~Gkst~~~~la-~~~~~-~~~~-------vl~~d~d~-~---------------~d~viiD~p~~~~---- 52 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLA-AALAR-RGKR-------VLLIDLDP-Q---------------YDYIIIDTPPSLG---- 52 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHH-HHHHh-CCCc-------EEEEeCCC-C---------------CCEEEEeCcCCCC----
Confidence 56676 68999999977776 33221 1111 11121111 1 3489999998632
Q ss_pred ccchhhHHhhhhhhcceEEEEEecc
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..+...+..||.++.+++..
T Consensus 53 -----~~~~~~l~~ad~viv~~~~~ 72 (104)
T cd02042 53 -----LLTRNALAAADLVLIPVQPS 72 (104)
T ss_pred -----HHHHHHHHHCCEEEEeccCC
Confidence 23557788899999999853
No 398
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=95.06 E-value=0.015 Score=53.20 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|+-.|+|+|.+++|||||++.|.+
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~ 24 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQ 24 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999984
No 399
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.01 E-value=0.0099 Score=58.39 Aligned_cols=23 Identities=26% Similarity=0.346 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.+||||||++..|..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~ 216 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAA 216 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34799999999999999999983
No 400
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.01 E-value=0.051 Score=55.80 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|++||.+||||||.+..|+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~ 196 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAA 196 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999988873
No 401
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=94.96 E-value=0.016 Score=44.22 Aligned_cols=19 Identities=32% Similarity=0.387 Sum_probs=18.2
Q ss_pred EEEEecCCCCccHHHHHHh
Q 014539 59 AGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Lt 77 (423)
|++.|.|++||||+.++|.
T Consensus 2 i~i~G~~gsGKst~~~~l~ 20 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLA 20 (69)
T ss_pred EEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999
No 402
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=94.96 E-value=0.011 Score=52.77 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=17.5
Q ss_pred EEEEEecCCCCccHHHHHHhhc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
||+|.|-|++|||||+++|...
T Consensus 1 rI~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHc
Confidence 6999999999999999999933
No 403
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=94.89 E-value=0.0073 Score=57.49 Aligned_cols=24 Identities=33% Similarity=0.533 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+--+++||+.++|||||||.+||.
T Consensus 30 Gei~~LIGPNGAGKTTlfNlitG~ 53 (250)
T COG0411 30 GEIVGLIGPNGAGKTTLFNLITGF 53 (250)
T ss_pred CeEEEEECCCCCCceeeeeeeccc
Confidence 346899999999999999999953
No 404
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.87 E-value=0.019 Score=55.30 Aligned_cols=24 Identities=42% Similarity=0.655 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
....|||-|.|+||||||+++|..
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~ 51 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIR 51 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHH
T ss_pred CceEEEeeCCCCCcHHHHHHHHHH
Confidence 457999999999999999999984
No 405
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.77 E-value=0.018 Score=53.50 Aligned_cols=25 Identities=32% Similarity=0.193 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 26 ~G~~~~l~G~nGsGKSTLl~~l~G~ 50 (211)
T cd03225 26 KGEFVLIVGPNGSGKSTLLRLLNGL 50 (211)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 406
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.76 E-value=0.018 Score=54.55 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (235)
T cd03261 25 RGEILAIIGPSGSGKSTLLRLIVGL 49 (235)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 407
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.75 E-value=0.017 Score=53.68 Aligned_cols=23 Identities=26% Similarity=0.426 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+ .++|+|.+|+|||||++.|+|.
T Consensus 26 g-~~~i~G~nGsGKSTLl~~l~Gl 48 (211)
T cd03264 26 G-MYGLLGPNGAGKTTLMRILATL 48 (211)
T ss_pred C-cEEEECCCCCCHHHHHHHHhCC
Confidence 5 8999999999999999999953
No 408
>PRK14530 adenylate kinase; Provisional
Probab=94.73 E-value=0.021 Score=53.55 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|+++|.|+|.|++||||+.+.|..
T Consensus 2 ~~~~I~i~G~pGsGKsT~~~~La~ 25 (215)
T PRK14530 2 SQPRILLLGAPGAGKGTQSSNLAE 25 (215)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999983
No 409
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=94.72 E-value=0.019 Score=53.08 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 23 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 47 (206)
T TIGR03608 23 KGKMYAIIGESGSGKSTLLNIIGLL 47 (206)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 410
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.71 E-value=0.019 Score=53.62 Aligned_cols=25 Identities=36% Similarity=0.312 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 29 ~G~~~~l~G~nGsGKSTLl~~i~Gl 53 (218)
T cd03255 29 KGEFVAIVGPSGSGKSTLLNILGGL 53 (218)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 411
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=94.69 E-value=0.018 Score=50.57 Aligned_cols=25 Identities=36% Similarity=0.509 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (144)
T cd03221 25 PGDRIGLVGRNGAGKSTLLKLIAGE 49 (144)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457899999999999999999964
No 412
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=94.68 E-value=0.079 Score=51.37 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=38.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
.-|+|+|..-+|||.|+|.|.+.. ...+++ ++.....|++-...+ . ..-....+.|+||.|+..
T Consensus 22 ~vvsi~G~~rtGKSfLln~l~~~~~gF~~~~---~~~~~T~Giw~w~~~---------~-~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 22 AVVSIVGPYRTGKSFLLNQLLGPQSGFSWGP---TVEPCTKGIWMWSEP---------L-PDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEEETTSSHHHHHHHHCCBSSSSESSS---CSSST-SCEEEECCE-----------TTSTCEEEEEEEEECBTT
T ss_pred EEEEeecCCccchHHHHHHHhcccccccccC---CCCCCCcceeeeecc---------c-ccccceeEEEecchhccc
Confidence 468999999999999999999532 122222 222223444322211 0 001125699999999965
No 413
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.66 E-value=0.022 Score=52.16 Aligned_cols=21 Identities=43% Similarity=0.619 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++|.|+|.|||||||+-..|+
T Consensus 1 ~riiilG~pGaGK~T~A~~La 21 (178)
T COG0563 1 MRILILGPPGAGKSTLAKKLA 21 (178)
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999999
No 414
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.02 Score=53.68 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (220)
T cd03265 25 RGEIFGLLGPNGAGKTTTIKMLTTL 49 (220)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 415
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=94.66 E-value=0.022 Score=42.83 Aligned_cols=20 Identities=40% Similarity=0.463 Sum_probs=18.5
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-..|.|..++|||||+.|+.
T Consensus 25 ~tli~G~nGsGKSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48899999999999999987
No 416
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=94.65 E-value=0.02 Score=54.52 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+=+|||||.+++|||||++.|+|
T Consensus 52 ~Ge~vGiiG~NGaGKSTLlkliaG 75 (249)
T COG1134 52 KGERVGIIGHNGAGKSTLLKLIAG 75 (249)
T ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Confidence 456899999999999999999994
No 417
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.65 E-value=0.019 Score=52.59 Aligned_cols=24 Identities=25% Similarity=0.238 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|.
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~ 41 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGL 41 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999954
No 418
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.64 E-value=0.023 Score=53.09 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 52 (216)
T TIGR00960 28 KGEMVFLVGHSGAGKSTFLKLILGI 52 (216)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 419
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.64 E-value=0.02 Score=53.28 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 27 ~G~~~~l~G~nGsGKSTLl~~i~Gl 51 (214)
T TIGR02673 27 KGEFLFLTGPSGAGKTTLLKLLYGA 51 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 420
>PRK10867 signal recognition particle protein; Provisional
Probab=94.63 E-value=0.1 Score=54.43 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=18.1
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.-|.++|.||+||||+.-.|+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA 121 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLA 121 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHH
Confidence 3568999999999999766665
No 421
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.61 E-value=0.029 Score=52.32 Aligned_cols=24 Identities=21% Similarity=0.393 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
....|+++|++|+|||||++++..
T Consensus 21 ~~~~i~~~G~~gsGKTTli~~l~~ 44 (207)
T TIGR00073 21 GLVVLNFMSSPGSGKTTLIEKLID 44 (207)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999983
No 422
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=94.54 E-value=0.02 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (220)
T cd03263 28 GEIFGLLGHNGAGKTTTLKMLTGE 51 (220)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999954
No 423
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.54 E-value=0.024 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.325 Sum_probs=22.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..+-.++|+|..++|||||++.|+|.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl 48 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQ 48 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcC
Confidence 34568999999999999999999964
No 424
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.52 E-value=0.024 Score=52.74 Aligned_cols=22 Identities=32% Similarity=0.607 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++|+|+|.+++|||||++++.+
T Consensus 2 ~~i~i~G~~GsGKTTll~~l~~ 23 (199)
T TIGR00101 2 LKIGVAGPVGSGKTALIEALTR 23 (199)
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999985
No 425
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.51 E-value=0.026 Score=51.97 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (195)
T PRK13541 25 PSAITYIKGANGCGKSSLLRMIAGI 49 (195)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 4458999999999999999999964
No 426
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=94.48 E-value=0.023 Score=52.78 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~G~~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03262 25 KGEVVVIIGPSGSGKSTLLRCINLL 49 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 427
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.46 E-value=0.024 Score=47.56 Aligned_cols=19 Identities=37% Similarity=0.740 Sum_probs=18.3
Q ss_pred EEEEecCCCCccHHHHHHh
Q 014539 59 AGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Lt 77 (423)
|+|.|.|+|||||+.+.|.
T Consensus 1 I~i~G~~GsGKtTia~~L~ 19 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELA 19 (129)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHH
Confidence 7899999999999999999
No 428
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=94.46 E-value=0.023 Score=53.57 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (232)
T cd03218 25 QGEIVGLLGPNGAGKTTTFYMIVGL 49 (232)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 429
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.46 E-value=0.024 Score=52.76 Aligned_cols=25 Identities=28% Similarity=0.324 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 26 ~G~~~~i~G~nGsGKSTLl~~l~G~ 50 (214)
T cd03292 26 AGEFVFLVGPSGAGKSTLLKLIYKE 50 (214)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 430
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.44 E-value=0.024 Score=48.84 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=18.4
Q ss_pred EEEEecCCCCccHHHHHHhh
Q 014539 59 AGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg 78 (423)
|.++|.|++|||||...|..
T Consensus 2 ii~~G~pgsGKSt~a~~l~~ 21 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAK 21 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 67899999999999999983
No 431
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=94.44 E-value=0.026 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.408 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.-|+|+|.+++|||||.++|++
T Consensus 6 g~vi~I~G~sGsGKSTl~~~l~~ 28 (207)
T TIGR00235 6 GIIIGIGGGSGSGKTTVARKIYE 28 (207)
T ss_pred eEEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999995
No 432
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.024 Score=52.75 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03259 25 PGEFLALLGPSGCGKTTLLRLIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 433
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.42 E-value=0.024 Score=52.48 Aligned_cols=25 Identities=20% Similarity=0.198 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (205)
T cd03226 25 AGEIIALTGKNGAGKTTLAKILAGL 49 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 434
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.42 E-value=0.025 Score=52.60 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (210)
T cd03269 25 KGEIFGLLGPNGAGKTTTIRMILGI 49 (210)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3456999999999999999999954
No 435
>cd01668 TGS_RelA_SpoT TGS_RelA_SpoT: The RelA (SpoT) protein, also referred to as ppGpp hydrolase/synthetase, is a ribosome-associated protein that is activated during amino acid starvation and thought to mediate the stringent response. RelA contains a TGS domain, named after the Threonyl-tRNA Synthetase, GTPase, and SpoT proteins where it occurs. The function of the TGS domain is unknown.
Probab=94.41 E-value=0.11 Score=37.88 Aligned_cols=49 Identities=20% Similarity=0.277 Sum_probs=41.1
Q ss_pred eEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEE
Q 014539 352 AWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLF 419 (423)
Q Consensus 352 aw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~ 419 (423)
...++.|+|+.+++..++..+.+.++.+.+. |. .+..++.+.+||.|++
T Consensus 10 ~~~~~~~~t~~~~~~~~~~~~~~~~va~~vn-----------------g~--~vdl~~~l~~~~~ve~ 58 (60)
T cd01668 10 IIELPAGATVLDFAYAIHTEIGNRCVGAKVN-----------------GK--LVPLSTVLKDGDIVEI 58 (60)
T ss_pred EEEcCCCCCHHHHHHHHChHhhhheEEEEEC-----------------CE--ECCCCCCCCCCCEEEE
Confidence 5678999999999999999998888887754 32 4678899999998876
No 436
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.41 E-value=0.025 Score=52.29 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 26 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 50 (200)
T PRK13540 26 AGGLLHLKGSNGAGKTTLLKLIAGL 50 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4468999999999999999999954
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=94.41 E-value=0.023 Score=52.30 Aligned_cols=20 Identities=35% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEecCCCCccHHHHHHhh
Q 014539 59 AGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg 78 (423)
|||+|.+++|||||.++|.+
T Consensus 2 igi~G~~GsGKSTl~~~l~~ 21 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIE 21 (198)
T ss_pred EEEECCCCCCHHHHHHHHHH
Confidence 79999999999999999984
No 438
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.41 E-value=0.024 Score=53.04 Aligned_cols=25 Identities=20% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (222)
T cd03224 25 EGEIVALLGRNGAGKTTLLKTIMGL 49 (222)
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 439
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=94.41 E-value=0.025 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 25 AGEALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999954
No 440
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.39 E-value=0.025 Score=53.80 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 27 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 51 (243)
T TIGR02315 27 PGEFVAIIGPSGAGKSTLLRCINRL 51 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 441
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.38 E-value=0.028 Score=51.50 Aligned_cols=23 Identities=35% Similarity=0.394 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.++|+|.+++|||||+++|++
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~ 47 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLA 47 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999994
No 442
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.38 E-value=0.025 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl 53 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGL 53 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 443
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=94.38 E-value=0.029 Score=52.84 Aligned_cols=25 Identities=24% Similarity=0.301 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 49 (227)
T cd03260 25 KGEITALIGPSGCGKSTLLRLLNRL 49 (227)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999964
No 444
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=94.38 E-value=0.025 Score=54.19 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 31 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 55 (253)
T PRK14242 31 QNQVTALIGPSGCGKSTFLRCLNRM 55 (253)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999963
No 445
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.35 E-value=0.026 Score=52.81 Aligned_cols=25 Identities=20% Similarity=0.173 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 36 AGEALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 446
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.33 E-value=0.026 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.417 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 54 (228)
T cd03257 30 KGETLGLVGESGSGKSTLARAILGL 54 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 447
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.33 E-value=0.027 Score=51.09 Aligned_cols=25 Identities=24% Similarity=0.328 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~ 49 (178)
T cd03229 25 AGEIVALLGPSGSGKSTLLRCIAGL 49 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 448
>PRK03839 putative kinase; Provisional
Probab=94.30 E-value=0.028 Score=50.97 Aligned_cols=21 Identities=33% Similarity=0.558 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|.|+|.|++||||+-..|.
T Consensus 1 m~I~l~G~pGsGKsT~~~~La 21 (180)
T PRK03839 1 MIIAITGTPGVGKTTVSKLLA 21 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 369999999999999999998
No 449
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=94.30 E-value=0.027 Score=52.63 Aligned_cols=25 Identities=20% Similarity=0.283 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 30 PGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 450
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=94.29 E-value=0.028 Score=51.86 Aligned_cols=25 Identities=20% Similarity=0.288 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 49 (198)
T TIGR01189 25 AGEALQVTGPNGIGKTTLLRILAGL 49 (198)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 451
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.29 E-value=0.039 Score=56.39 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=30.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL 106 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~ 106 (423)
...|++||.+||||||-+-.|...-. ..-.....+.++.+.-|+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~-------~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYV-------MLKKKKKVAIITTDTYRI 246 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHH-------hhccCcceEEEEeccchh
Confidence 56799999999999999999983221 122334556666655554
No 452
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.29 E-value=0.027 Score=53.23 Aligned_cols=25 Identities=32% Similarity=0.373 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 30 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 54 (233)
T cd03258 30 KGEIFGIIGRSGAGKSTLIRCINGL 54 (233)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 453
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.28 E-value=0.032 Score=50.00 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 49 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGL 49 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4468999999999999999999964
No 454
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.26 E-value=0.028 Score=51.21 Aligned_cols=26 Identities=27% Similarity=0.308 Sum_probs=22.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.++|+|.+++|||||++.|+|..
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (182)
T cd03215 25 AGEIVGIAGLVGNGQTELAEALFGLR 50 (182)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999543
No 455
>PRK08118 topology modulation protein; Reviewed
Probab=94.26 E-value=0.03 Score=50.58 Aligned_cols=21 Identities=29% Similarity=0.292 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+|.|+|.|++|||||...|.
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~ 22 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLG 22 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 456
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=94.26 E-value=0.03 Score=50.59 Aligned_cols=21 Identities=29% Similarity=0.344 Sum_probs=19.4
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.++|+|.||||||||.++|.+
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~ 23 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARA 23 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999984
No 457
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.028 Score=52.92 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|.
T Consensus 29 G~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 29 GETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 446999999999999999999964
No 458
>PRK05480 uridine/cytidine kinase; Provisional
Probab=94.23 E-value=0.032 Score=51.89 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+..|+|.|.|++|||||.++|.+
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~ 28 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYE 28 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999994
No 459
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=94.23 E-value=0.027 Score=52.47 Aligned_cols=25 Identities=36% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 24 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 48 (213)
T cd03235 24 PGEFLAIVGPNGAGKSTLLKAILGL 48 (213)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999954
No 460
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=94.23 E-value=0.032 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.286 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 30 ~G~~~~i~G~nGsGKSTLl~~i~G~ 54 (221)
T TIGR02211 30 KGEIVAIVGSSGSGKSTLLHLLGGL 54 (221)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 461
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.23 E-value=0.026 Score=53.51 Aligned_cols=25 Identities=24% Similarity=0.279 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 50 (241)
T cd03256 26 PGEFVALIGPSGAGKSTLLRCLNGL 50 (241)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 462
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=94.21 E-value=0.38 Score=42.27 Aligned_cols=48 Identities=19% Similarity=0.112 Sum_probs=29.8
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhcCC
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTEL 307 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l 307 (423)
..+|+++++||.| +.. .....+...+....+.+++++||+.+.++.+|
T Consensus 40 ~~~p~iiv~NK~D--l~~---~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L 87 (156)
T cd01859 40 LGKKLLIVLNKAD--LVP---KEVLEKWKSIKESEGIPVVYVSAKERLGTKIL 87 (156)
T ss_pred CCCcEEEEEEhHH--hCC---HHHHHHHHHHHHhCCCcEEEEEccccccHHHH
Confidence 4689999999995 322 11222222333344667899999887665443
No 463
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=94.19 E-value=0.027 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 35 ~Ge~~~i~G~nGsGKSTLl~~i~Gl 59 (228)
T PRK10584 35 RGETIALIGESGSGKSTLLAILAGL 59 (228)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcC
Confidence 3457999999999999999999964
No 464
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=94.19 E-value=0.028 Score=52.74 Aligned_cols=24 Identities=29% Similarity=0.393 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..++|||||++.|+|.
T Consensus 13 Ge~~~l~G~NGsGKSTLlk~i~Gl 36 (213)
T PRK15177 13 HEHIGILAAPGSGKTTLTRLLCGL 36 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 465
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.19 E-value=0.029 Score=53.69 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14262 29 NQITAIIGPSGCGKTTLLRSINRM 52 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 457999999999999999999953
No 466
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=94.19 E-value=0.031 Score=50.96 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-++|+|++|+|||||+++|..
T Consensus 7 ~ii~ivG~sgsGKTTLi~~li~ 28 (173)
T PRK10751 7 PLLAIAAWSGTGKTTLLKKLIP 28 (173)
T ss_pred eEEEEECCCCChHHHHHHHHHH
Confidence 4689999999999999999993
No 467
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=94.19 E-value=0.17 Score=53.61 Aligned_cols=88 Identities=17% Similarity=0.103 Sum_probs=53.2
Q ss_pred ccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 51 SKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 51 ~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
...+.-+++-++|..|+|||.|++++.|+.... ++...++.....-.+.+.++. ..++|-|.+-
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~g~~---------------k~LiL~ei~~ 483 (625)
T KOG1707|consen 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVKGQQ---------------KYLILREIGE 483 (625)
T ss_pred cccceeeeEEEEcCCcCchHHHHHHHhcccccc-ccccCCCCceeeeeeeecccc---------------ceEEEeecCc
Confidence 334455889999999999999999999866655 333333222222233333321 3467777664
Q ss_pred CcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 131 LVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 131 l~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. ... +.+ .. ..||+++++.|.+.
T Consensus 484 ~~-~~~----l~~---ke-~~cDv~~~~YDsS~ 507 (625)
T KOG1707|consen 484 DD-QDF----LTS---KE-AACDVACLVYDSSN 507 (625)
T ss_pred cc-ccc----ccC---cc-ceeeeEEEecccCC
Confidence 31 111 000 11 67999999999873
No 468
>PRK10908 cell division protein FtsE; Provisional
Probab=94.18 E-value=0.03 Score=52.60 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (222)
T PRK10908 27 PGEMAFLTGHSGAGKSTLLKLICGI 51 (222)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4457999999999999999999954
No 469
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.18 E-value=0.029 Score=53.37 Aligned_cols=25 Identities=20% Similarity=0.207 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (242)
T PRK11124 27 QGETLVLLGPSGAGKSSLLRVLNLL 51 (242)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 470
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.18 E-value=0.029 Score=53.67 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~i~G~ 52 (250)
T PRK14247 28 DNTITALMGPSGSGKSTLLRVFNRL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999964
No 471
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=94.16 E-value=0.033 Score=53.21 Aligned_cols=25 Identities=24% Similarity=0.278 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 28 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 52 (250)
T PRK11264 28 PGEVVAIIGPSGSGKTTLLRCINLL 52 (250)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 472
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.16 E-value=0.029 Score=53.57 Aligned_cols=25 Identities=20% Similarity=0.321 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (246)
T PRK14269 27 QNKITALIGASGCGKSTFLRCFNRM 51 (246)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999953
No 473
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=94.14 E-value=0.028 Score=52.12 Aligned_cols=25 Identities=20% Similarity=0.270 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~G~~~~i~G~nGsGKSTLl~~l~Gl 49 (208)
T cd03268 25 KGEIYGFLGPNGAGKTTTMKIILGL 49 (208)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999964
No 474
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=94.14 E-value=0.03 Score=52.99 Aligned_cols=25 Identities=32% Similarity=0.276 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 34 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 58 (233)
T PRK11629 34 EGEMMAIVGSSGSGKSTLLHLLGGL 58 (233)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 475
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.13 E-value=0.03 Score=53.20 Aligned_cols=24 Identities=21% Similarity=0.321 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|.
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGL 51 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 476
>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.12 E-value=0.026 Score=65.77 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+-||||||++|+|||||+++|.
T Consensus 1165 p~eKVGIVGRTGaGKSSL~~aLF 1187 (1381)
T KOG0054|consen 1165 PGEKVGIVGRTGAGKSSLILALF 1187 (1381)
T ss_pred CCceEEEeCCCCCCHHHHHHHHH
Confidence 34699999999999999999998
No 477
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=94.11 E-value=0.03 Score=53.54 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 30 PNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999963
No 478
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.11 E-value=0.031 Score=51.74 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (200)
T cd03217 25 KGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 479
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=94.10 E-value=0.031 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.++|+|.+++|||||++.|+|-.
T Consensus 25 ~Ge~~~IvG~nGsGKSTLlk~l~Gl~ 50 (255)
T cd03236 25 EGQVLGLVGPNGIGKSTALKILAGKL 50 (255)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 44579999999999999999999643
No 480
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=94.10 E-value=0.031 Score=53.85 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 29 ~Ge~~~i~G~nGsGKSTLl~~laGl 53 (258)
T PRK14241 29 PRSVTAFIGPSGCGKSTVLRTLNRM 53 (258)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999964
No 481
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=94.10 E-value=0.035 Score=52.68 Aligned_cols=25 Identities=28% Similarity=0.303 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 25 KGEIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 482
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.08 E-value=0.036 Score=51.56 Aligned_cols=25 Identities=16% Similarity=0.154 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (213)
T cd03301 25 DGEFVVLLGPSGCGKTTTLRMIAGL 49 (213)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 483
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.03 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 32 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 56 (202)
T cd03233 32 PGEMVLVLGRPGSGCSTLLKALANR 56 (202)
T ss_pred CCcEEEEECCCCCCHHHHHHHhccc
Confidence 3457999999999999999999954
No 484
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=94.07 E-value=0.033 Score=50.50 Aligned_cols=25 Identities=24% Similarity=0.414 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~ 51 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGD 51 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999964
No 485
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=94.07 E-value=0.03 Score=52.93 Aligned_cols=25 Identities=32% Similarity=0.454 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 49 (236)
T cd03219 25 PGEIHGLIGPNGAGKTTLFNLISGF 49 (236)
T ss_pred CCcEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999953
No 486
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=94.06 E-value=0.031 Score=52.67 Aligned_cols=25 Identities=24% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 49 (230)
T TIGR03410 25 KGEVTCVLGRNGVGKTTLLKTLMGL 49 (230)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 487
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=94.05 E-value=0.044 Score=58.49 Aligned_cols=27 Identities=33% Similarity=0.432 Sum_probs=23.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
..+-+|||||..|+|||||++.|+|..
T Consensus 27 ~~G~riGLvG~NGaGKSTLLkilaG~~ 53 (530)
T COG0488 27 NPGERIGLVGRNGAGKSTLLKILAGEL 53 (530)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 345799999999999999999999754
No 488
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.05 E-value=0.032 Score=53.75 Aligned_cols=25 Identities=24% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|.
T Consensus 37 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 61 (259)
T PRK14274 37 ENEVTAIIGPSGCGKSTFIKTLNLM 61 (259)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhh
Confidence 3457999999999999999999964
No 489
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.04 E-value=0.034 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.356 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 25 ~Ge~~~i~G~nGsGKStLl~~l~G~ 49 (173)
T cd03230 25 KGEIYGLLGPNGAGKTTLIKIILGL 49 (173)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999954
No 490
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=94.03 E-value=0.031 Score=53.02 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~i~G~ 52 (238)
T cd03249 28 PGKTVALVGSSGCGKSTVVSLLERF 52 (238)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhcc
Confidence 3457999999999999999999964
No 491
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.03 E-value=1.7 Score=39.05 Aligned_cols=34 Identities=15% Similarity=0.099 Sum_probs=24.8
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
...++++||||... ......+..||.+++|+...
T Consensus 92 ~~d~viiDtpp~~~---------~~~~~~l~~aD~vliv~~~~ 125 (179)
T cd03110 92 GAELIIIDGPPGIG---------CPVIASLTGADAALLVTEPT 125 (179)
T ss_pred CCCEEEEECcCCCc---------HHHHHHHHcCCEEEEEecCC
Confidence 45799999997532 13455678899999998853
No 492
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.03 E-value=0.036 Score=48.62 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=19.2
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|+|+.|+|||||+..|..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~ 22 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLIN 22 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999983
No 493
>PRK13695 putative NTPase; Provisional
Probab=94.03 E-value=0.035 Score=50.12 Aligned_cols=22 Identities=45% Similarity=0.792 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|+|+|+|.|++|||||++.+.+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~ 22 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAE 22 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999874
No 494
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=94.02 E-value=0.033 Score=51.78 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 51 (207)
T PRK13539 27 AGEALVLTGPNGSGKTTLLRLIAGL 51 (207)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 495
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=94.02 E-value=0.033 Score=52.98 Aligned_cols=25 Identities=32% Similarity=0.396 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|.
T Consensus 28 ~Ge~~~l~G~nGsGKSTLl~~l~G~ 52 (241)
T PRK10895 28 SGEIVGLLGPNGAGKTTTFYMVVGI 52 (241)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 496
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=94.02 E-value=0.03 Score=53.66 Aligned_cols=24 Identities=25% Similarity=0.264 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|.
T Consensus 30 Ge~~~l~G~nGsGKSTLl~~l~G~ 53 (253)
T PRK14267 30 NGVFALMGPSGCGKSTLLRTFNRL 53 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcc
Confidence 457899999999999999999964
No 497
>KOG4181 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.052 Score=54.15 Aligned_cols=23 Identities=35% Similarity=0.504 Sum_probs=21.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.-||++|.-++|||||+|.|.++
T Consensus 189 ~VIgvlG~QgsGKStllslLaan 211 (491)
T KOG4181|consen 189 TVIGVLGGQGSGKSTLLSLLAAN 211 (491)
T ss_pred eEEEeecCCCccHHHHHHHHhcc
Confidence 46999999999999999999964
No 498
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=94.00 E-value=0.033 Score=52.80 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 26 ~Ge~~~i~G~nGsGKSTLl~~l~G~ 50 (236)
T TIGR03864 26 PGEFVALLGPNGAGKSTLFSLLTRL 50 (236)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999964
No 499
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.032 Score=54.05 Aligned_cols=25 Identities=28% Similarity=0.436 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+++|||||++.|+|.
T Consensus 36 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 60 (265)
T PRK10575 36 AGKVTGLIGHNGSGKSTLLKMLGRH 60 (265)
T ss_pred CCCEEEEECCCCCCHHHHHHHHcCC
Confidence 3457999999999999999999954
No 500
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=93.99 E-value=0.032 Score=55.37 Aligned_cols=24 Identities=21% Similarity=0.268 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+=.++|+|.+|+|||||++.|+|-
T Consensus 33 Ge~v~iiG~nGsGKSTLl~~L~Gl 56 (305)
T PRK13651 33 GEFIAIIGQTGSGKTTFIEHLNAL 56 (305)
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457999999999999999999964
Done!