Query 014539
Match_columns 423
No_of_seqs 360 out of 3483
Neff 7.3
Searched_HMMs 29240
Date Mon Mar 25 13:25:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014539.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014539hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jal_A YCHF protein; nucleotid 100.0 6.7E-91 2.3E-95 698.3 25.6 363 55-423 1-363 (363)
2 2ohf_A Protein OLA1, GTP-bindi 100.0 3.7E-89 1.3E-93 691.8 25.1 366 53-423 19-389 (396)
3 1ni3_A YCHF GTPase, YCHF GTP-b 100.0 3E-87 1E-91 679.1 30.4 368 54-423 18-391 (392)
4 2dby_A GTP-binding protein; GD 100.0 5.1E-87 1.8E-91 673.3 30.5 363 57-423 2-368 (368)
5 1wxq_A GTP-binding protein; st 100.0 5.7E-58 1.9E-62 466.7 20.6 331 57-421 1-394 (397)
6 4a9a_A Ribosome-interacting GT 100.0 5.2E-58 1.8E-62 462.2 3.0 291 56-420 72-374 (376)
7 3iev_A GTP-binding protein ERA 99.8 6.1E-20 2.1E-24 180.4 10.9 189 55-272 9-230 (308)
8 1wf3_A GTP-binding protein; GT 99.8 2.9E-19 9.9E-24 175.1 11.8 186 57-271 8-221 (301)
9 1lnz_A SPO0B-associated GTP-bi 99.8 1.9E-19 6.4E-24 179.5 8.7 90 57-163 159-248 (342)
10 1xzp_A Probable tRNA modificat 99.8 4.3E-18 1.5E-22 176.9 16.2 97 50-163 237-335 (482)
11 2qtf_A Protein HFLX, GTP-bindi 99.8 1.8E-18 6E-23 173.9 11.2 88 56-163 178-269 (364)
12 2eki_A DRG 1, developmentally- 99.8 2.7E-19 9.1E-24 142.8 3.5 77 333-421 5-86 (93)
13 1udx_A The GTP-binding protein 99.7 4.7E-18 1.6E-22 173.4 12.9 90 56-162 157-246 (416)
14 1ega_A Protein (GTP-binding pr 99.7 9.2E-18 3.2E-22 164.3 8.9 187 57-272 9-223 (301)
15 2gj8_A MNME, tRNA modification 99.7 2.7E-17 9.1E-22 147.0 11.1 93 55-164 3-96 (172)
16 1mky_A Probable GTP-binding pr 99.7 6.1E-17 2.1E-21 166.4 14.8 89 57-162 2-92 (439)
17 3gee_A MNME, tRNA modification 99.7 4.2E-17 1.4E-21 169.3 12.2 99 49-164 226-325 (476)
18 3i8s_A Ferrous iron transport 99.7 7.5E-17 2.6E-21 155.7 11.9 89 56-162 3-96 (274)
19 3iby_A Ferrous iron transport 99.7 5.3E-17 1.8E-21 155.4 10.1 87 57-162 2-94 (256)
20 2wji_A Ferrous iron transport 99.7 7.7E-16 2.6E-20 136.1 14.5 87 57-162 4-92 (165)
21 2g6b_A RAS-related protein RAB 99.7 1.4E-15 4.8E-20 135.0 15.8 154 55-305 9-162 (180)
22 3b1v_A Ferrous iron uptake tra 99.7 4E-16 1.4E-20 150.7 13.0 87 56-162 3-91 (272)
23 1g16_A RAS-related protein SEC 99.7 1.3E-15 4.5E-20 133.6 14.9 151 56-305 3-153 (170)
24 3tkl_A RAS-related protein RAB 99.7 2.1E-15 7.1E-20 135.9 16.5 153 56-306 16-168 (196)
25 3geh_A MNME, tRNA modification 99.7 6.1E-17 2.1E-21 167.5 6.7 97 50-163 218-315 (462)
26 3a1s_A Iron(II) transport prot 99.7 5E-16 1.7E-20 148.7 12.5 88 56-162 5-94 (258)
27 1z08_A RAS-related protein RAB 99.7 2.7E-15 9.3E-20 131.7 16.1 151 56-304 6-156 (170)
28 2hjg_A GTP-binding protein ENG 99.6 2.4E-16 8.2E-21 161.9 10.4 90 57-163 4-94 (436)
29 2dyk_A GTP-binding protein; GT 99.6 1.7E-15 5.9E-20 131.8 14.2 90 57-163 2-91 (161)
30 4dsu_A GTPase KRAS, isoform 2B 99.6 4.5E-15 1.5E-19 132.6 17.2 152 56-306 4-155 (189)
31 3cph_A RAS-related protein SEC 99.6 2.2E-15 7.5E-20 137.8 15.3 155 53-306 17-171 (213)
32 2y8e_A RAB-protein 6, GH09086P 99.6 3.5E-15 1.2E-19 131.9 15.8 83 57-162 15-97 (179)
33 3t5g_A GTP-binding protein RHE 99.6 2E-15 6.7E-20 134.5 14.2 153 56-306 6-158 (181)
34 4dcu_A GTP-binding protein ENG 99.6 9.7E-16 3.3E-20 158.2 13.4 92 55-163 194-289 (456)
35 3tw8_B RAS-related protein RAB 99.6 2.4E-15 8.1E-20 133.3 14.1 153 55-306 8-160 (181)
36 2bcg_Y Protein YP2, GTP-bindin 99.6 5.4E-15 1.9E-19 134.9 16.6 153 56-306 8-160 (206)
37 3lxw_A GTPase IMAP family memb 99.6 2.2E-15 7.6E-20 143.1 14.4 91 55-162 20-116 (247)
38 3q72_A GTP-binding protein RAD 99.6 5.2E-15 1.8E-19 129.6 15.6 151 56-305 2-152 (166)
39 2hxs_A RAB-26, RAS-related pro 99.6 2.5E-15 8.7E-20 133.1 13.8 86 56-163 6-91 (178)
40 1u8z_A RAS-related protein RAL 99.6 2.8E-15 9.5E-20 130.8 13.8 152 56-305 4-155 (168)
41 2fn4_A P23, RAS-related protei 99.6 1.1E-14 3.6E-19 129.0 17.7 152 56-305 9-160 (181)
42 3cbq_A GTP-binding protein REM 99.6 5.8E-15 2E-19 134.5 16.3 156 54-305 21-176 (195)
43 4dhe_A Probable GTP-binding pr 99.6 1.8E-15 6.3E-20 139.6 13.1 93 55-163 28-127 (223)
44 3q85_A GTP-binding protein REM 99.6 4.6E-15 1.6E-19 130.3 15.1 153 57-305 3-155 (169)
45 2fu5_C RAS-related protein RAB 99.6 1.1E-15 3.8E-20 136.4 11.2 153 56-306 8-160 (183)
46 2efe_B Small GTP-binding prote 99.6 8.1E-15 2.8E-19 130.2 16.7 151 56-304 12-162 (181)
47 1wms_A RAB-9, RAB9, RAS-relate 99.6 1.3E-14 4.4E-19 128.4 17.8 155 56-305 7-162 (177)
48 2hjg_A GTP-binding protein ENG 99.6 8.8E-16 3E-20 157.7 11.5 92 55-163 174-269 (436)
49 1z0f_A RAB14, member RAS oncog 99.6 7.1E-15 2.4E-19 129.9 15.9 151 56-304 15-165 (179)
50 2a9k_A RAS-related protein RAL 99.6 1.2E-14 4E-19 129.4 17.4 153 56-306 18-170 (187)
51 2gf9_A RAS-related protein RAB 99.6 3.3E-15 1.1E-19 134.5 13.8 152 56-305 22-173 (189)
52 1c1y_A RAS-related protein RAP 99.6 1.3E-14 4.6E-19 126.6 17.3 83 57-163 4-86 (167)
53 2bov_A RAla, RAS-related prote 99.6 9.7E-15 3.3E-19 132.6 16.9 154 55-306 13-166 (206)
54 1z2a_A RAS-related protein RAB 99.6 7.2E-15 2.4E-19 128.5 15.1 150 56-304 5-154 (168)
55 1kao_A RAP2A; GTP-binding prot 99.6 6.4E-15 2.2E-19 128.3 14.7 152 57-306 4-155 (167)
56 2ew1_A RAS-related protein RAB 99.6 6.7E-15 2.3E-19 135.1 15.5 153 56-306 26-178 (201)
57 3clv_A RAB5 protein, putative; 99.6 2.1E-14 7.3E-19 129.1 18.5 165 55-305 6-192 (208)
58 1ek0_A Protein (GTP-binding pr 99.6 5.6E-15 1.9E-19 129.3 14.2 84 57-163 4-87 (170)
59 2bme_A RAB4A, RAS-related prot 99.6 2.7E-15 9.3E-20 134.0 12.5 153 56-306 10-162 (186)
60 1vg8_A RAS-related protein RAB 99.6 9E-15 3.1E-19 133.0 16.1 157 55-306 7-164 (207)
61 2il1_A RAB12; G-protein, GDP, 99.6 4.2E-15 1.4E-19 134.6 13.9 86 55-163 25-110 (192)
62 2a5j_A RAS-related protein RAB 99.6 3E-15 1E-19 135.1 12.8 153 56-306 21-173 (191)
63 1zbd_A Rabphilin-3A; G protein 99.6 1.4E-14 4.7E-19 131.8 17.0 153 56-306 8-160 (203)
64 1z06_A RAS-related protein RAB 99.6 7.3E-15 2.5E-19 132.2 15.0 149 56-301 20-169 (189)
65 3bc1_A RAS-related protein RAB 99.6 1.3E-14 4.4E-19 129.8 16.1 162 56-305 11-173 (195)
66 2oil_A CATX-8, RAS-related pro 99.6 1.4E-14 4.9E-19 130.6 16.3 153 55-305 24-176 (193)
67 2hup_A RAS-related protein RAB 99.6 1E-14 3.6E-19 133.2 15.5 154 55-306 28-182 (201)
68 2qu8_A Putative nucleolar GTP- 99.6 2.9E-14 9.8E-19 132.9 18.5 91 55-163 28-120 (228)
69 2fg5_A RAB-22B, RAS-related pr 99.6 1.9E-14 6.5E-19 130.1 16.7 150 56-304 23-173 (192)
70 1r2q_A RAS-related protein RAB 99.6 1.8E-14 6.3E-19 126.0 15.9 85 56-163 6-90 (170)
71 4dkx_A RAS-related protein RAB 99.6 3.2E-15 1.1E-19 139.4 11.6 152 56-305 13-164 (216)
72 1x3s_A RAS-related protein RAB 99.6 1.9E-14 6.5E-19 129.3 16.2 152 56-305 15-166 (195)
73 2o52_A RAS-related protein RAB 99.6 6.4E-15 2.2E-19 134.4 12.9 153 56-306 25-177 (200)
74 1ky3_A GTP-binding protein YPT 99.6 1.8E-14 6E-19 127.7 15.4 87 55-163 7-93 (182)
75 3oes_A GTPase rhebl1; small GT 99.6 9.8E-15 3.4E-19 133.0 14.1 154 55-306 23-176 (201)
76 2nzj_A GTP-binding protein REM 99.6 1.4E-14 4.7E-19 127.8 14.6 155 56-306 4-158 (175)
77 2wjg_A FEOB, ferrous iron tran 99.6 1.1E-14 3.8E-19 130.4 14.0 88 56-162 7-96 (188)
78 3kkq_A RAS-related protein M-R 99.6 3E-14 1E-18 127.0 16.3 152 55-304 17-169 (183)
79 2ce2_X GTPase HRAS; signaling 99.6 6.6E-14 2.2E-18 121.5 18.0 149 57-304 4-152 (166)
80 3cpj_B GTP-binding protein YPT 99.6 1.3E-14 4.3E-19 134.7 13.9 151 56-304 13-163 (223)
81 1z0j_A RAB-22, RAS-related pro 99.6 3.1E-14 1.1E-18 124.7 15.6 85 56-163 6-90 (170)
82 2e87_A Hypothetical protein PH 99.6 4.7E-14 1.6E-18 141.0 18.8 92 54-163 165-258 (357)
83 1mky_A Probable GTP-binding pr 99.6 1.7E-14 5.7E-19 148.3 15.7 92 55-163 179-275 (439)
84 3k53_A Ferrous iron transport 99.6 9.9E-15 3.4E-19 140.2 13.1 87 57-162 4-92 (271)
85 2p5s_A RAS and EF-hand domain 99.6 1.2E-14 4.1E-19 132.2 12.8 87 54-163 26-112 (199)
86 3dz8_A RAS-related protein RAB 99.6 3.9E-15 1.3E-19 134.4 9.3 154 54-305 21-174 (191)
87 2f7s_A C25KG, RAS-related prot 99.6 2.3E-14 7.9E-19 131.8 14.5 164 56-306 25-188 (217)
88 2iwr_A Centaurin gamma 1; ANK 99.6 3.3E-14 1.1E-18 126.2 15.0 78 56-163 7-84 (178)
89 4dcu_A GTP-binding protein ENG 99.6 2.5E-15 8.6E-20 155.1 8.8 90 56-162 23-113 (456)
90 2erx_A GTP-binding protein DI- 99.6 4.1E-14 1.4E-18 124.0 15.0 84 56-163 3-86 (172)
91 3con_A GTPase NRAS; structural 99.6 6.1E-14 2.1E-18 125.9 16.5 151 57-306 22-172 (190)
92 2yc2_C IFT27, small RAB-relate 99.6 6.9E-15 2.4E-19 133.6 10.3 161 55-307 19-182 (208)
93 3c5c_A RAS-like protein 12; GD 99.6 1.8E-14 6.1E-19 130.0 13.0 154 55-305 20-174 (187)
94 3qq5_A Small GTP-binding prote 99.6 5E-15 1.7E-19 151.4 10.1 91 55-161 33-123 (423)
95 3t1o_A Gliding protein MGLA; G 99.6 3E-14 1E-18 127.9 14.0 164 56-306 14-181 (198)
96 2q3h_A RAS homolog gene family 99.6 2.8E-14 9.7E-19 129.5 13.8 88 52-163 16-103 (201)
97 2atv_A RERG, RAS-like estrogen 99.6 4.7E-14 1.6E-18 127.8 15.2 152 55-305 27-179 (196)
98 3lxx_A GTPase IMAP family memb 99.6 7.4E-14 2.5E-18 131.2 16.5 90 55-162 28-123 (239)
99 3r7w_A Gtpase1, GTP-binding pr 99.6 7.3E-14 2.5E-18 136.8 17.1 90 56-163 3-92 (307)
100 3pqc_A Probable GTP-binding pr 99.6 4.5E-14 1.5E-18 126.7 14.3 88 55-162 22-115 (195)
101 3reg_A RHO-like small GTPase; 99.6 5.7E-14 1.9E-18 126.9 15.0 152 55-304 22-175 (194)
102 2cjw_A GTP-binding protein GEM 99.5 3.9E-14 1.3E-18 128.7 13.5 86 56-162 6-91 (192)
103 2g3y_A GTP-binding protein GEM 99.5 2.4E-14 8.2E-19 133.0 12.3 87 55-162 36-122 (211)
104 4djt_A GTP-binding nuclear pro 99.5 4.2E-14 1.4E-18 130.1 13.7 154 54-304 9-162 (218)
105 2h57_A ADP-ribosylation factor 99.5 1.5E-13 5E-18 123.7 17.0 83 55-163 20-102 (190)
106 3l0i_B RAS-related protein RAB 99.5 1.1E-15 3.7E-20 139.2 2.8 85 56-163 33-117 (199)
107 1upt_A ARL1, ADP-ribosylation 99.5 1.1E-13 3.9E-18 121.4 15.4 83 53-163 4-86 (171)
108 1svi_A GTP-binding protein YSX 99.5 2E-13 6.7E-18 122.9 16.9 89 55-163 22-117 (195)
109 2gf0_A GTP-binding protein DI- 99.5 1.8E-13 6.1E-18 123.5 16.5 84 55-163 7-91 (199)
110 1f6b_A SAR1; gtpases, N-termin 99.5 1E-13 3.6E-18 126.3 14.6 80 56-163 25-104 (198)
111 2lkc_A Translation initiation 99.5 4.4E-14 1.5E-18 125.0 11.7 85 54-163 6-90 (178)
112 2atx_A Small GTP binding prote 99.5 2.2E-13 7.6E-18 122.8 16.2 84 56-163 18-101 (194)
113 4bas_A ADP-ribosylation factor 99.5 2.4E-13 8.1E-18 122.7 16.1 84 54-163 15-98 (199)
114 3t5d_A Septin-7; GTP-binding p 99.5 1.9E-14 6.5E-19 138.5 9.2 94 55-162 7-126 (274)
115 1mh1_A RAC1; GTP-binding, GTPa 99.5 1.8E-13 6E-18 121.8 14.9 84 56-163 5-88 (186)
116 3q3j_B RHO-related GTP-binding 99.5 6.7E-14 2.3E-18 129.3 12.2 86 54-163 25-110 (214)
117 1r8s_A ADP-ribosylation factor 99.5 4.6E-13 1.6E-17 116.8 16.6 79 57-163 1-79 (164)
118 1ksh_A ARF-like protein 2; sma 99.5 2.3E-13 7.8E-18 121.8 14.8 81 55-163 17-97 (186)
119 1m2o_B GTP-binding protein SAR 99.5 2.5E-13 8.5E-18 122.9 15.2 80 56-163 23-102 (190)
120 1zj6_A ADP-ribosylation factor 99.5 2.3E-13 7.7E-18 122.2 14.8 81 55-163 15-95 (187)
121 2j0v_A RAC-like GTP-binding pr 99.5 2.1E-13 7.3E-18 124.8 14.8 84 56-163 9-92 (212)
122 2xtp_A GTPase IMAP family memb 99.5 2.7E-13 9.1E-18 128.9 15.7 92 55-163 21-117 (260)
123 4gzl_A RAS-related C3 botulinu 99.5 1.4E-13 4.9E-18 125.9 13.3 85 55-163 29-113 (204)
124 3ihw_A Centg3; RAS, centaurin, 99.5 5.1E-13 1.8E-17 120.3 16.6 148 55-305 19-168 (184)
125 2h17_A ADP-ribosylation factor 99.5 1.4E-13 4.7E-18 123.1 12.6 81 55-163 20-100 (181)
126 2gco_A H9, RHO-related GTP-bin 99.5 2.1E-13 7.3E-18 124.2 13.5 83 56-162 25-107 (201)
127 2j1l_A RHO-related GTP-binding 99.5 1.3E-13 4.5E-18 127.1 12.2 85 55-163 33-117 (214)
128 1m7b_A RND3/RHOE small GTP-bin 99.5 3.2E-13 1.1E-17 121.0 14.1 84 55-162 6-89 (184)
129 3gj0_A GTP-binding nuclear pro 99.5 7.8E-14 2.7E-18 128.9 10.2 86 54-163 13-99 (221)
130 2x77_A ADP-ribosylation factor 99.5 4.4E-13 1.5E-17 120.4 14.9 81 55-163 21-101 (189)
131 3lvq_E ARF-GAP with SH3 domain 99.5 3E-13 1E-17 140.7 15.8 80 56-163 322-401 (497)
132 3bwd_D RAC-like GTP-binding pr 99.5 3.2E-14 1.1E-18 126.4 7.2 84 56-163 8-91 (182)
133 1zd9_A ADP-ribosylation factor 99.5 5.8E-13 2E-17 119.9 15.1 82 55-163 21-102 (188)
134 1jwy_B Dynamin A GTPase domain 99.5 4.2E-13 1.4E-17 130.9 15.2 105 55-162 23-178 (315)
135 1fzq_A ADP-ribosylation factor 99.5 3.3E-13 1.1E-17 121.0 13.0 81 55-163 15-95 (181)
136 2fv8_A H6, RHO-related GTP-bin 99.5 6.2E-13 2.1E-17 121.7 15.1 82 57-162 26-107 (207)
137 2b6h_A ADP-ribosylation factor 99.5 8.3E-13 2.9E-17 119.6 15.6 81 55-163 28-108 (192)
138 1moz_A ARL1, ADP-ribosylation 99.5 3.9E-13 1.3E-17 119.5 13.2 81 55-163 17-97 (183)
139 3p26_A Elongation factor 1 alp 99.5 2.3E-13 8E-18 141.4 13.1 86 55-164 32-147 (483)
140 1gwn_A RHO-related GTP-binding 99.5 6E-13 2.1E-17 122.3 14.3 84 55-162 27-110 (205)
141 2cxx_A Probable GTP-binding pr 99.4 3.4E-12 1.2E-16 114.0 16.4 55 57-133 2-56 (190)
142 3th5_A RAS-related C3 botulinu 99.1 1.2E-14 4.2E-19 132.5 0.0 85 55-163 29-113 (204)
143 3j2k_7 ERF3, eukaryotic polype 99.4 2.5E-13 8.6E-18 139.6 9.7 85 55-163 16-130 (439)
144 3izq_1 HBS1P, elongation facto 99.4 6E-13 2.1E-17 142.1 11.5 84 55-162 166-279 (611)
145 2wkq_A NPH1-1, RAS-related C3 99.4 2.3E-12 7.9E-17 125.7 14.6 87 53-163 152-238 (332)
146 2aka_B Dynamin-1; fusion prote 99.4 4.9E-13 1.7E-17 129.2 9.2 28 55-82 25-52 (299)
147 2fh5_B SR-beta, signal recogni 99.4 1.8E-12 6E-17 118.8 12.2 83 55-162 6-89 (214)
148 3o47_A ADP-ribosylation factor 99.4 4.3E-12 1.5E-16 125.5 15.7 81 55-163 164-244 (329)
149 3def_A T7I23.11 protein; chlor 99.4 3.4E-12 1.2E-16 121.9 14.3 87 55-162 35-127 (262)
150 3llu_A RAS-related GTP-binding 99.4 6.4E-12 2.2E-16 113.9 15.2 88 54-163 18-107 (196)
151 2f9l_A RAB11B, member RAS onco 99.4 5.8E-12 2E-16 114.4 14.2 84 56-162 5-88 (199)
152 2zej_A Dardarin, leucine-rich 99.4 2E-12 6.7E-17 116.1 10.5 88 57-163 3-91 (184)
153 2j69_A Bacterial dynamin-like 99.4 3.5E-12 1.2E-16 138.1 14.4 108 52-163 65-212 (695)
154 3dpu_A RAB family protein; roc 99.4 9.8E-13 3.4E-17 138.3 9.1 158 54-305 39-196 (535)
155 1zun_B Sulfate adenylate trans 99.3 1E-11 3.4E-16 127.4 15.8 84 56-163 24-139 (434)
156 1oix_A RAS-related protein RAB 99.3 4.3E-12 1.5E-16 114.9 11.2 84 56-162 29-112 (191)
157 3t34_A Dynamin-related protein 99.3 3.1E-11 1.1E-15 120.5 15.8 103 56-162 34-183 (360)
158 3izy_P Translation initiation 99.3 1.3E-12 4.6E-17 137.0 5.8 85 55-163 3-87 (537)
159 1nrj_B SR-beta, signal recogni 99.3 7.9E-12 2.7E-16 114.8 9.6 78 54-162 10-93 (218)
160 3sjy_A Translation initiation 99.3 2.4E-11 8.3E-16 123.3 14.1 100 54-163 6-110 (403)
161 1wb1_A Translation elongation 99.3 3.6E-12 1.2E-16 132.5 7.5 84 56-163 19-108 (482)
162 3mca_A HBS1, elongation factor 99.2 1.3E-12 4.5E-17 139.0 2.7 85 55-163 176-290 (592)
163 1jny_A EF-1-alpha, elongation 99.2 1.9E-11 6.7E-16 125.3 11.3 84 56-163 6-119 (435)
164 3tr5_A RF-3, peptide chain rel 99.2 5.1E-11 1.8E-15 125.0 14.1 84 56-163 13-117 (528)
165 1h65_A Chloroplast outer envel 99.2 1.8E-11 6.3E-16 117.2 9.8 91 55-162 38-130 (270)
166 1kk1_A EIF2gamma; initiation o 99.2 2.9E-11 1E-15 122.9 11.1 99 55-163 9-118 (410)
167 2c78_A Elongation factor TU-A; 99.2 7.5E-11 2.6E-15 119.7 14.0 85 55-163 10-110 (405)
168 1f60_A Elongation factor EEF1A 99.2 1.4E-11 4.9E-16 127.1 8.8 83 56-162 7-119 (458)
169 2x2e_A Dynamin-1; nitration, h 99.2 5.7E-11 1.9E-15 118.4 12.7 28 55-82 30-57 (353)
170 1s0u_A EIF-2-gamma, translatio 99.2 8.1E-11 2.8E-15 119.6 13.0 99 55-163 7-116 (408)
171 3ec1_A YQEH GTPase; atnos1, at 99.2 1.2E-11 4E-16 124.4 6.3 87 56-162 162-256 (369)
172 2elf_A Protein translation elo 99.2 1.3E-10 4.5E-15 116.7 13.2 70 58-160 23-92 (370)
173 3c5h_A Glucocorticoid receptor 99.2 8E-11 2.7E-15 112.0 10.4 45 255-304 197-242 (255)
174 2www_A Methylmalonic aciduria 99.2 1.4E-11 4.8E-16 122.8 5.4 98 53-164 71-200 (349)
175 1d2e_A Elongation factor TU (E 99.2 1.9E-10 6.3E-15 116.6 12.8 84 56-163 3-101 (397)
176 3zvr_A Dynamin-1; hydrolase, D 99.1 4.7E-11 1.6E-15 129.5 7.7 193 55-261 50-315 (772)
177 1zo1_I IF2, translation initia 99.1 1.7E-11 5.7E-16 127.6 3.2 83 56-163 4-86 (501)
178 1r5b_A Eukaryotic peptide chai 99.1 4E-11 1.4E-15 124.1 6.0 84 56-163 43-156 (467)
179 2xex_A Elongation factor G; GT 99.1 6.8E-10 2.3E-14 120.2 14.8 84 56-163 10-110 (693)
180 2qag_A Septin-2, protein NEDD5 99.1 1.2E-10 4.1E-15 116.6 8.1 30 53-82 34-63 (361)
181 1puj_A YLQF, conserved hypothe 99.1 9.3E-11 3.2E-15 113.6 6.7 63 54-136 118-180 (282)
182 3cb4_D GTP-binding protein LEP 99.0 9.8E-10 3.4E-14 116.8 13.4 88 57-163 5-106 (599)
183 3h2y_A GTPase family protein; 99.0 1.6E-10 5.5E-15 116.0 6.6 86 56-161 160-254 (368)
184 2ged_A SR-beta, signal recogni 99.0 2.5E-10 8.5E-15 102.4 6.9 82 54-162 46-129 (193)
185 2qpt_A EH domain-containing pr 99.0 2.7E-10 9.4E-15 120.1 6.9 106 55-163 64-200 (550)
186 2ywe_A GTP-binding protein LEP 99.0 1.3E-09 4.6E-14 115.7 12.2 88 57-163 7-108 (600)
187 1dar_A EF-G, elongation factor 99.0 4.4E-09 1.5E-13 113.7 15.4 84 56-163 12-112 (691)
188 2h5e_A Peptide chain release f 99.0 3.6E-09 1.2E-13 111.0 13.1 84 56-163 13-117 (529)
189 3avx_A Elongation factor TS, e 98.9 2.4E-09 8.2E-14 119.9 11.7 85 55-163 295-394 (1289)
190 3r7w_B Gtpase2, GTP-binding pr 98.9 2.5E-09 8.5E-14 105.4 9.8 84 58-163 1-84 (331)
191 1g7s_A Translation initiation 98.9 4.5E-09 1.5E-13 111.7 12.4 97 56-163 5-105 (594)
192 3p32_A Probable GTPase RV1496/ 98.9 2.1E-09 7.3E-14 107.1 8.3 158 54-231 77-284 (355)
193 1pui_A ENGB, probable GTP-bind 98.9 2.1E-09 7.2E-14 97.7 7.3 90 54-163 24-120 (210)
194 3cnl_A YLQF, putative uncharac 98.8 1.8E-09 6.1E-14 103.4 4.2 60 57-136 100-159 (262)
195 1f5n_A Interferon-induced guan 98.8 7.1E-09 2.4E-13 109.8 8.2 66 54-133 36-103 (592)
196 2p67_A LAO/AO transport system 98.8 9E-09 3.1E-13 102.1 7.6 101 54-164 54-182 (341)
197 2dy1_A Elongation factor G; tr 98.8 1.7E-07 5.9E-12 100.9 17.7 85 55-163 8-109 (665)
198 2qnr_A Septin-2, protein NEDD5 98.7 3.9E-08 1.3E-12 95.8 10.3 47 256-306 155-203 (301)
199 2rdo_7 EF-G, elongation factor 98.7 1.9E-07 6.6E-12 101.1 16.3 92 55-163 9-117 (704)
200 2wsm_A Hydrogenase expression/ 98.7 5.9E-08 2E-12 89.0 9.9 38 55-92 29-71 (221)
201 3hvz_A Uncharacterized protein 98.7 2.8E-08 9.7E-13 77.3 5.7 60 339-420 7-66 (78)
202 2qm8_A GTPase/ATPase; G protei 98.6 5.2E-08 1.8E-12 96.5 8.6 38 54-91 53-96 (337)
203 1yrb_A ATP(GTP)binding protein 98.6 5.6E-08 1.9E-12 91.6 6.6 105 56-163 14-149 (262)
204 1n0u_A EF-2, elongation factor 98.6 5.1E-08 1.8E-12 107.6 6.6 99 56-164 19-134 (842)
205 2qag_C Septin-7; cell cycle, c 98.5 1.4E-07 4.9E-12 96.0 8.0 28 54-81 29-56 (418)
206 2qag_B Septin-6, protein NEDD5 98.3 7.8E-07 2.7E-11 90.6 8.1 24 57-80 43-66 (427)
207 3q5d_A Atlastin-1; G protein, 98.3 4.9E-07 1.7E-11 92.7 5.5 72 56-134 67-153 (447)
208 3sop_A Neuronal-specific septi 98.2 7.8E-06 2.7E-10 78.3 11.4 25 57-81 3-27 (270)
209 2j37_W Signal recognition part 98.1 2.7E-06 9.2E-11 88.5 6.6 102 56-164 101-226 (504)
210 3vqt_A RF-3, peptide chain rel 98.0 1.3E-05 4.4E-10 84.4 10.0 85 57-165 32-137 (548)
211 2hf9_A Probable hydrogenase ni 97.9 3.3E-05 1.1E-09 70.6 10.0 25 55-79 37-61 (226)
212 2v3c_C SRP54, signal recogniti 97.9 9.8E-06 3.4E-10 82.8 5.3 22 57-78 100-121 (432)
213 4fn5_A EF-G 1, elongation fact 97.8 0.00043 1.5E-08 74.9 17.3 90 57-163 14-120 (709)
214 1t9h_A YLOQ, probable GTPase E 97.7 1.2E-05 4E-10 78.5 1.9 33 56-88 173-205 (307)
215 1tq4_A IIGP1, interferon-induc 97.6 8.3E-05 2.8E-09 75.4 7.7 25 55-79 68-92 (413)
216 3j25_A Tetracycline resistance 97.6 1.8E-05 6.2E-10 84.7 2.6 84 58-165 4-104 (638)
217 2rcn_A Probable GTPase ENGC; Y 97.5 3.9E-05 1.3E-09 76.4 3.1 26 56-81 215-240 (358)
218 3dm5_A SRP54, signal recogniti 97.4 0.00021 7.2E-09 73.0 7.2 22 56-77 100-121 (443)
219 3szr_A Interferon-induced GTP- 97.3 0.00034 1.2E-08 74.4 7.8 23 57-79 46-68 (608)
220 2yv5_A YJEQ protein; hydrolase 97.3 0.0002 6.7E-09 69.5 5.4 33 56-89 165-197 (302)
221 1u0l_A Probable GTPase ENGC; p 97.3 0.00015 5.1E-09 70.3 4.4 32 56-87 169-200 (301)
222 1cip_A Protein (guanine nucleo 97.0 0.00085 2.9E-08 66.6 6.9 38 121-165 193-230 (353)
223 1j8m_F SRP54, signal recogniti 96.9 0.0011 3.8E-08 64.1 6.5 23 56-78 98-120 (297)
224 3ney_A 55 kDa erythrocyte memb 96.9 0.00035 1.2E-08 63.7 2.4 43 56-98 19-62 (197)
225 3kl4_A SRP54, signal recogniti 96.9 0.0012 4.2E-08 67.2 6.8 22 56-77 97-118 (433)
226 1kgd_A CASK, peripheral plasma 96.8 0.00065 2.2E-08 60.3 3.6 42 56-97 5-47 (180)
227 2xxa_A Signal recognition part 96.4 0.0024 8.2E-08 65.1 4.9 105 56-163 100-225 (433)
228 1ye8_A Protein THEP1, hypothet 96.3 0.0014 4.7E-08 58.5 2.5 24 57-80 1-24 (178)
229 1s96_A Guanylate kinase, GMP k 96.3 0.0023 7.9E-08 59.0 3.6 43 52-94 12-56 (219)
230 1lvg_A Guanylate kinase, GMP k 96.2 0.001 3.5E-08 60.1 1.0 23 57-79 5-27 (198)
231 3tau_A Guanylate kinase, GMP k 96.2 0.003 1E-07 57.3 3.8 40 56-95 8-48 (208)
232 1zcb_A G alpha I/13; GTP-bindi 96.1 0.0045 1.5E-07 61.5 5.2 37 121-164 201-237 (362)
233 2qor_A Guanylate kinase; phosp 96.1 0.0025 8.6E-08 57.5 2.9 43 53-95 9-52 (204)
234 3ohm_A Guanine nucleotide-bind 96.1 0.011 3.8E-07 57.9 7.5 36 121-163 167-202 (327)
235 3a00_A Guanylate kinase, GMP k 96.1 0.0017 5.7E-08 57.8 1.4 23 58-80 3-25 (186)
236 2px0_A Flagellar biosynthesis 96.0 0.014 4.8E-07 56.3 7.8 23 56-78 105-127 (296)
237 1kag_A SKI, shikimate kinase I 95.9 0.0028 9.7E-08 55.1 2.3 25 55-79 3-27 (173)
238 1u0l_A Probable GTPase ENGC; p 95.9 0.003 1E-07 61.0 2.6 79 255-338 114-194 (301)
239 1ex7_A Guanylate kinase; subst 95.9 0.0039 1.3E-07 56.1 3.0 40 59-98 4-44 (186)
240 2yhs_A FTSY, cell division pro 95.8 0.0055 1.9E-07 63.3 4.1 23 56-78 293-315 (503)
241 3c8u_A Fructokinase; YP_612366 95.8 0.0049 1.7E-07 55.8 3.2 26 54-79 20-45 (208)
242 1zp6_A Hypothetical protein AT 95.7 0.0047 1.6E-07 54.6 2.9 24 55-78 8-31 (191)
243 3e70_C DPA, signal recognition 95.7 0.0042 1.4E-07 60.9 2.8 24 55-78 128-151 (328)
244 1zu4_A FTSY; GTPase, signal re 95.7 0.011 3.6E-07 57.8 5.5 23 56-78 105-127 (320)
245 3lnc_A Guanylate kinase, GMP k 95.7 0.0057 2E-07 56.1 3.3 38 56-93 27-65 (231)
246 1znw_A Guanylate kinase, GMP k 95.6 0.0042 1.4E-07 56.2 2.2 28 53-80 17-44 (207)
247 4ido_A Atlastin-1; GTPase, GTP 95.6 0.021 7.3E-07 58.2 7.3 22 56-77 67-88 (457)
248 3tr0_A Guanylate kinase, GMP k 95.5 0.0058 2E-07 54.5 2.8 24 56-79 7-30 (205)
249 2kmm_A Guanosine-3',5'-BIS(dip 95.3 0.017 5.8E-07 43.2 4.4 52 351-421 11-62 (73)
250 1puj_A YLQF, conserved hypothe 95.3 0.074 2.5E-06 50.7 10.0 48 255-307 49-96 (282)
251 1z6g_A Guanylate kinase; struc 95.3 0.0063 2.2E-07 55.7 2.2 25 56-80 23-47 (218)
252 2bdt_A BH3686; alpha-beta prot 95.3 0.0066 2.3E-07 53.7 2.2 23 56-78 2-24 (189)
253 1cke_A CK, MSSA, protein (cyti 95.3 0.0079 2.7E-07 54.6 2.8 23 56-78 5-27 (227)
254 3asz_A Uridine kinase; cytidin 95.2 0.0083 2.9E-07 53.9 2.7 24 56-79 6-29 (211)
255 2pcj_A ABC transporter, lipopr 95.2 0.0074 2.5E-07 55.7 2.2 24 56-79 30-53 (224)
256 2xtz_A Guanine nucleotide-bind 95.1 0.025 8.4E-07 56.0 6.1 36 121-163 183-218 (354)
257 3tif_A Uncharacterized ABC tra 95.1 0.0072 2.5E-07 56.2 2.1 25 55-79 30-54 (235)
258 2j41_A Guanylate kinase; GMP, 95.1 0.0094 3.2E-07 53.1 2.8 24 56-79 6-29 (207)
259 3b85_A Phosphate starvation-in 95.0 0.0098 3.3E-07 54.3 2.7 24 56-79 22-45 (208)
260 3ec1_A YQEH GTPase; atnos1, at 95.0 0.27 9.1E-06 48.7 13.4 111 255-370 97-225 (369)
261 2onk_A Molybdate/tungstate ABC 94.9 0.0092 3.2E-07 55.8 2.2 23 57-79 25-47 (240)
262 1ly1_A Polynucleotide kinase; 94.9 0.011 3.8E-07 51.2 2.6 24 55-78 1-24 (181)
263 4eun_A Thermoresistant glucoki 94.9 0.012 4E-07 52.8 2.7 23 56-78 29-51 (200)
264 4gp7_A Metallophosphoesterase; 94.9 0.0096 3.3E-07 52.2 2.1 22 56-77 9-30 (171)
265 1g6h_A High-affinity branched- 94.8 0.0098 3.3E-07 56.0 2.1 25 55-79 32-56 (257)
266 1sgw_A Putative ABC transporte 94.8 0.01 3.5E-07 54.5 2.1 24 56-79 35-58 (214)
267 1jjv_A Dephospho-COA kinase; P 94.8 0.013 4.3E-07 52.6 2.7 22 57-78 3-24 (206)
268 2v9p_A Replication protein E1; 94.8 0.012 4.3E-07 57.0 2.8 25 55-79 125-149 (305)
269 1b0u_A Histidine permease; ABC 94.8 0.01 3.4E-07 56.2 2.1 25 55-79 31-55 (262)
270 4g1u_C Hemin import ATP-bindin 94.8 0.01 3.4E-07 56.4 2.1 25 55-79 36-60 (266)
271 1mv5_A LMRA, multidrug resista 94.8 0.011 3.8E-07 55.2 2.3 25 55-79 27-51 (243)
272 2cbz_A Multidrug resistance-as 94.8 0.011 3.8E-07 55.0 2.3 25 55-79 30-54 (237)
273 3gfo_A Cobalt import ATP-bindi 94.8 0.01 3.5E-07 56.7 2.1 24 56-79 34-57 (275)
274 2bbw_A Adenylate kinase 4, AK4 94.7 0.013 4.3E-07 54.4 2.6 22 56-77 27-48 (246)
275 2if2_A Dephospho-COA kinase; a 94.7 0.013 4.3E-07 52.4 2.6 22 57-78 2-23 (204)
276 2ff7_A Alpha-hemolysin translo 94.7 0.012 4E-07 55.3 2.3 25 55-79 34-58 (247)
277 1np6_A Molybdopterin-guanine d 94.7 0.014 4.8E-07 51.8 2.7 24 55-78 5-28 (174)
278 2d2e_A SUFC protein; ABC-ATPas 94.7 0.011 3.9E-07 55.3 2.2 25 55-79 28-52 (250)
279 2yv5_A YJEQ protein; hydrolase 94.7 0.014 4.7E-07 56.4 2.7 79 255-338 109-189 (302)
280 1ji0_A ABC transporter; ATP bi 94.7 0.011 3.9E-07 55.0 2.1 25 55-79 31-55 (240)
281 2pze_A Cystic fibrosis transme 94.7 0.012 3.9E-07 54.6 2.1 25 55-79 33-57 (229)
282 2f1r_A Molybdopterin-guanine d 94.7 0.0069 2.4E-07 53.7 0.5 22 57-78 3-24 (171)
283 1htw_A HI0065; nucleotide-bind 94.6 0.019 6.4E-07 50.1 3.3 26 55-80 32-57 (158)
284 2olj_A Amino acid ABC transpor 94.6 0.012 4E-07 55.8 2.1 25 55-79 49-73 (263)
285 1knq_A Gluconate kinase; ALFA/ 94.6 0.015 5.2E-07 50.5 2.7 23 56-78 8-30 (175)
286 1vpl_A ABC transporter, ATP-bi 94.6 0.012 4.1E-07 55.5 2.1 25 55-79 40-64 (256)
287 2qi9_C Vitamin B12 import ATP- 94.6 0.012 4.1E-07 55.3 2.1 24 56-79 26-49 (249)
288 2zu0_C Probable ATP-dependent 94.6 0.013 4.3E-07 55.6 2.2 25 55-79 45-69 (267)
289 2i3b_A HCR-ntpase, human cance 94.5 0.013 4.5E-07 52.6 2.1 22 58-79 3-24 (189)
290 3uie_A Adenylyl-sulfate kinase 94.5 0.018 6.1E-07 51.6 3.0 25 54-78 23-47 (200)
291 2ghi_A Transport protein; mult 94.5 0.014 4.7E-07 55.1 2.3 24 55-78 45-68 (260)
292 3cm0_A Adenylate kinase; ATP-b 94.5 0.015 5E-07 51.0 2.3 22 56-77 4-25 (186)
293 2ihy_A ABC transporter, ATP-bi 94.4 0.015 5E-07 55.7 2.3 25 55-79 46-70 (279)
294 2ixe_A Antigen peptide transpo 94.4 0.015 5.1E-07 55.3 2.3 25 55-79 44-68 (271)
295 2nq2_C Hypothetical ABC transp 94.4 0.014 4.7E-07 55.0 2.0 24 56-79 31-54 (253)
296 2qt1_A Nicotinamide riboside k 94.4 0.019 6.7E-07 51.4 2.9 24 55-78 20-43 (207)
297 3lw7_A Adenylate kinase relate 94.4 0.017 5.7E-07 49.5 2.4 20 57-76 2-21 (179)
298 2yz2_A Putative ABC transporte 94.4 0.014 4.9E-07 55.2 2.1 25 55-79 32-56 (266)
299 2ffh_A Protein (FFH); SRP54, s 94.4 0.053 1.8E-06 55.0 6.4 23 56-78 98-120 (425)
300 4a74_A DNA repair and recombin 94.4 0.016 5.4E-07 52.4 2.3 24 56-79 25-48 (231)
301 3t61_A Gluconokinase; PSI-biol 94.3 0.017 6E-07 51.5 2.5 24 55-78 17-40 (202)
302 1qhx_A CPT, protein (chloramph 94.3 0.019 6.6E-07 49.9 2.7 22 56-77 3-24 (178)
303 2eyu_A Twitching motility prot 94.3 0.016 5.4E-07 54.8 2.2 25 54-78 23-47 (261)
304 2rhm_A Putative kinase; P-loop 94.2 0.021 7.3E-07 50.1 2.8 23 55-77 4-26 (193)
305 2jaq_A Deoxyguanosine kinase; 94.2 0.019 6.6E-07 50.8 2.5 22 57-78 1-22 (205)
306 3aez_A Pantothenate kinase; tr 94.2 0.02 6.9E-07 55.6 2.7 26 54-79 88-113 (312)
307 2iyv_A Shikimate kinase, SK; t 94.2 0.017 5.8E-07 50.7 2.0 23 55-77 1-23 (184)
308 3kb2_A SPBC2 prophage-derived 94.1 0.021 7.2E-07 49.1 2.4 22 57-78 2-23 (173)
309 2pjz_A Hypothetical protein ST 94.1 0.019 6.7E-07 54.3 2.3 23 56-78 30-52 (263)
310 3fb4_A Adenylate kinase; psych 94.0 0.021 7.3E-07 51.4 2.4 21 57-77 1-21 (216)
311 2yvu_A Probable adenylyl-sulfa 94.0 0.024 8.4E-07 49.9 2.7 24 55-78 12-35 (186)
312 2jeo_A Uridine-cytidine kinase 94.0 0.024 8.1E-07 52.6 2.7 24 55-78 24-47 (245)
313 3nh6_A ATP-binding cassette SU 94.0 0.013 4.5E-07 56.8 0.9 24 55-78 79-102 (306)
314 2v54_A DTMP kinase, thymidylat 93.9 0.027 9.2E-07 50.0 2.8 22 56-77 4-25 (204)
315 2ehv_A Hypothetical protein PH 93.9 0.021 7.2E-07 52.3 2.1 22 56-77 30-51 (251)
316 3dl0_A Adenylate kinase; phosp 93.9 0.024 8.2E-07 51.1 2.4 21 57-77 1-21 (216)
317 1lw7_A Transcriptional regulat 93.9 0.018 6.2E-07 56.8 1.7 25 56-80 170-194 (365)
318 1kht_A Adenylate kinase; phosp 93.8 0.027 9.1E-07 49.3 2.6 22 56-77 3-24 (192)
319 2wwf_A Thymidilate kinase, put 93.8 0.03 1E-06 50.0 3.0 23 55-77 9-31 (212)
320 3tui_C Methionine import ATP-b 93.8 0.023 7.7E-07 56.5 2.2 25 55-79 53-77 (366)
321 2bbs_A Cystic fibrosis transme 93.8 0.025 8.5E-07 54.4 2.4 25 55-79 63-87 (290)
322 1rz3_A Hypothetical protein rb 93.8 0.03 1E-06 50.2 2.9 25 54-78 20-44 (201)
323 2pt7_A CAG-ALFA; ATPase, prote 93.7 0.024 8.3E-07 55.4 2.4 24 56-79 171-194 (330)
324 2kjq_A DNAA-related protein; s 93.7 0.031 1E-06 48.0 2.7 24 55-78 35-58 (149)
325 3h2y_A GTPase family protein; 93.7 0.21 7.2E-06 49.4 9.1 111 255-371 95-225 (368)
326 3vaa_A Shikimate kinase, SK; s 93.7 0.03 1E-06 50.0 2.7 22 57-78 26-47 (199)
327 4e22_A Cytidylate kinase; P-lo 93.6 0.031 1.1E-06 52.2 2.8 22 56-77 27-48 (252)
328 2pt5_A Shikimate kinase, SK; a 93.6 0.029 1E-06 48.2 2.4 21 57-77 1-21 (168)
329 1nks_A Adenylate kinase; therm 93.6 0.03 1E-06 49.0 2.5 21 57-77 2-22 (194)
330 2plr_A DTMP kinase, probable t 93.5 0.031 1.1E-06 49.7 2.6 22 56-77 4-25 (213)
331 1sq5_A Pantothenate kinase; P- 93.5 0.032 1.1E-06 53.8 2.8 25 54-78 78-102 (308)
332 1nn5_A Similar to deoxythymidy 93.5 0.037 1.2E-06 49.5 2.9 22 56-77 9-30 (215)
333 1y63_A LMAJ004144AAA protein; 93.4 0.038 1.3E-06 48.8 2.9 23 56-78 10-32 (184)
334 2gza_A Type IV secretion syste 93.4 0.029 1E-06 55.5 2.3 24 55-78 174-197 (361)
335 2cdn_A Adenylate kinase; phosp 93.4 0.037 1.3E-06 49.3 2.8 24 54-77 18-41 (201)
336 3ec2_A DNA replication protein 93.4 0.026 9E-07 49.4 1.7 23 56-78 38-60 (180)
337 3fvq_A Fe(3+) IONS import ATP- 93.3 0.03 1E-06 55.5 2.3 24 56-79 30-53 (359)
338 1tev_A UMP-CMP kinase; ploop, 93.3 0.035 1.2E-06 48.6 2.5 22 56-77 3-24 (196)
339 1qf9_A UMP/CMP kinase, protein 93.3 0.039 1.3E-06 48.2 2.8 23 55-77 5-27 (194)
340 1e4v_A Adenylate kinase; trans 93.3 0.036 1.2E-06 50.0 2.5 21 57-77 1-21 (214)
341 1uf9_A TT1252 protein; P-loop, 93.3 0.04 1.4E-06 48.7 2.8 23 56-78 8-30 (203)
342 1z47_A CYSA, putative ABC-tran 93.3 0.031 1.1E-06 55.3 2.2 24 56-79 41-64 (355)
343 2bwj_A Adenylate kinase 5; pho 93.2 0.034 1.1E-06 49.1 2.2 23 55-77 11-33 (199)
344 2pez_A Bifunctional 3'-phospho 93.2 0.039 1.3E-06 48.2 2.6 23 56-78 5-27 (179)
345 2c95_A Adenylate kinase 1; tra 93.2 0.041 1.4E-06 48.4 2.7 23 55-77 8-30 (196)
346 2yyz_A Sugar ABC transporter, 93.2 0.032 1.1E-06 55.3 2.2 24 56-79 29-52 (359)
347 1e6c_A Shikimate kinase; phosp 93.2 0.035 1.2E-06 47.9 2.2 21 57-77 3-23 (173)
348 3jvv_A Twitching mobility prot 93.2 0.033 1.1E-06 55.1 2.2 22 57-78 124-145 (356)
349 3tlx_A Adenylate kinase 2; str 93.2 0.048 1.6E-06 50.6 3.3 24 54-77 27-50 (243)
350 3trf_A Shikimate kinase, SK; a 93.2 0.04 1.4E-06 48.2 2.6 22 56-77 5-26 (185)
351 2pbr_A DTMP kinase, thymidylat 93.1 0.04 1.4E-06 48.3 2.5 21 57-77 1-21 (195)
352 1aky_A Adenylate kinase; ATP:A 93.1 0.042 1.4E-06 49.8 2.7 22 56-77 4-25 (220)
353 1vht_A Dephospho-COA kinase; s 93.0 0.044 1.5E-06 49.5 2.7 22 56-77 4-25 (218)
354 1g29_1 MALK, maltose transport 93.0 0.035 1.2E-06 55.3 2.2 24 56-79 29-52 (372)
355 2it1_A 362AA long hypothetical 93.0 0.035 1.2E-06 55.1 2.2 24 56-79 29-52 (362)
356 3rlf_A Maltose/maltodextrin im 93.0 0.036 1.2E-06 55.4 2.2 24 56-79 29-52 (381)
357 2vli_A Antibiotic resistance p 92.9 0.048 1.6E-06 47.4 2.7 22 56-77 5-26 (183)
358 1v43_A Sugar-binding transport 92.9 0.038 1.3E-06 55.0 2.2 24 56-79 37-60 (372)
359 1m7g_A Adenylylsulfate kinase; 92.9 0.053 1.8E-06 48.9 3.0 26 53-78 22-47 (211)
360 1zd8_A GTP:AMP phosphotransfer 92.8 0.048 1.6E-06 49.7 2.7 22 56-77 7-28 (227)
361 2vp4_A Deoxynucleoside kinase; 92.8 0.043 1.5E-06 50.4 2.3 26 54-79 18-43 (230)
362 2ewv_A Twitching motility prot 92.7 0.039 1.3E-06 54.8 2.1 23 56-78 136-158 (372)
363 3be4_A Adenylate kinase; malar 92.7 0.051 1.8E-06 49.2 2.8 22 56-77 5-26 (217)
364 1via_A Shikimate kinase; struc 92.7 0.042 1.4E-06 47.8 2.1 21 58-78 6-26 (175)
365 1rj9_A FTSY, signal recognitio 92.7 0.052 1.8E-06 52.5 2.9 24 55-78 101-124 (304)
366 1nij_A Hypothetical protein YJ 92.7 0.047 1.6E-06 52.9 2.6 23 57-79 5-27 (318)
367 2z0h_A DTMP kinase, thymidylat 92.7 0.048 1.6E-06 48.0 2.4 21 57-77 1-21 (197)
368 3nwj_A ATSK2; P loop, shikimat 92.7 0.045 1.6E-06 51.4 2.3 23 56-78 48-70 (250)
369 2x8a_A Nuclear valosin-contain 92.6 0.044 1.5E-06 52.0 2.2 21 59-79 47-67 (274)
370 1gtv_A TMK, thymidylate kinase 92.6 0.025 8.5E-07 50.6 0.4 21 58-78 2-22 (214)
371 3gd7_A Fusion complex of cysti 92.6 0.045 1.5E-06 54.9 2.3 24 55-78 46-69 (390)
372 3tqc_A Pantothenate kinase; bi 92.6 0.063 2.1E-06 52.4 3.3 24 55-78 91-114 (321)
373 1cr0_A DNA primase/helicase; R 92.5 0.047 1.6E-06 51.9 2.3 25 55-79 34-58 (296)
374 2oap_1 GSPE-2, type II secreti 92.5 0.046 1.6E-06 56.7 2.4 23 56-78 260-282 (511)
375 1zak_A Adenylate kinase; ATP:A 92.5 0.052 1.8E-06 49.2 2.5 22 56-77 5-26 (222)
376 3iij_A Coilin-interacting nucl 92.4 0.056 1.9E-06 47.2 2.4 22 56-77 11-32 (180)
377 3cr8_A Sulfate adenylyltranfer 92.4 0.07 2.4E-06 55.9 3.6 26 53-78 366-391 (552)
378 3d31_A Sulfate/molybdate ABC t 92.4 0.032 1.1E-06 55.1 0.9 24 56-79 26-49 (348)
379 3a4m_A L-seryl-tRNA(SEC) kinas 92.4 0.057 1.9E-06 50.6 2.6 22 56-77 4-25 (260)
380 1odf_A YGR205W, hypothetical 3 92.3 0.06 2.1E-06 51.6 2.8 25 54-78 29-53 (290)
381 2w0m_A SSO2452; RECA, SSPF, un 92.3 0.052 1.8E-06 48.8 2.2 23 56-78 23-45 (235)
382 2xb4_A Adenylate kinase; ATP-b 92.3 0.059 2E-06 49.2 2.5 21 57-77 1-21 (223)
383 3b9q_A Chloroplast SRP recepto 92.2 0.064 2.2E-06 51.8 2.8 24 56-79 100-123 (302)
384 1p9r_A General secretion pathw 92.2 0.053 1.8E-06 54.8 2.2 23 56-78 167-189 (418)
385 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.056 1.9E-06 55.4 2.4 26 55-80 137-162 (460)
386 1oxx_K GLCV, glucose, ABC tran 92.1 0.029 1E-06 55.5 0.2 24 56-79 31-54 (353)
387 2obl_A ESCN; ATPase, hydrolase 92.1 0.064 2.2E-06 52.8 2.6 26 55-80 70-95 (347)
388 3ake_A Cytidylate kinase; CMP 92.1 0.07 2.4E-06 47.3 2.7 22 57-78 3-24 (208)
389 1yqt_A RNAse L inhibitor; ATP- 92.0 0.058 2E-06 56.3 2.4 27 54-80 45-71 (538)
390 1ixz_A ATP-dependent metallopr 92.0 0.058 2E-06 49.9 2.2 21 59-79 52-72 (254)
391 3cnl_A YLQF, putative uncharac 92.0 0.16 5.6E-06 47.8 5.3 101 256-370 46-157 (262)
392 2p5t_B PEZT; postsegregational 91.8 0.062 2.1E-06 50.0 2.1 25 54-78 30-54 (253)
393 2yl4_A ATP-binding cassette SU 91.8 0.082 2.8E-06 55.7 3.3 25 55-79 369-393 (595)
394 1xjc_A MOBB protein homolog; s 91.7 0.079 2.7E-06 46.8 2.6 22 57-78 5-26 (169)
395 4eaq_A DTMP kinase, thymidylat 91.7 0.082 2.8E-06 48.7 2.8 25 54-78 24-48 (229)
396 1ukz_A Uridylate kinase; trans 91.6 0.084 2.9E-06 46.9 2.7 21 57-77 16-36 (203)
397 3ozx_A RNAse L inhibitor; ATP 91.6 0.063 2.2E-06 56.1 2.1 25 55-79 24-48 (538)
398 3j16_B RLI1P; ribosome recycli 91.5 0.069 2.3E-06 56.6 2.2 26 55-80 102-127 (608)
399 3qf4_B Uncharacterized ABC tra 91.4 0.093 3.2E-06 55.4 3.2 37 55-103 380-416 (598)
400 3euj_A Chromosome partition pr 91.4 0.07 2.4E-06 55.0 2.2 23 57-79 30-52 (483)
401 3b60_A Lipid A export ATP-bind 91.4 0.084 2.9E-06 55.5 2.8 25 55-79 368-392 (582)
402 1ltq_A Polynucleotide kinase; 91.3 0.088 3E-06 49.9 2.6 23 56-78 2-24 (301)
403 1ak2_A Adenylate kinase isoenz 91.2 0.098 3.3E-06 47.9 2.8 22 56-77 16-37 (233)
404 1iy2_A ATP-dependent metallopr 91.2 0.079 2.7E-06 49.9 2.2 22 58-79 75-96 (278)
405 2cvh_A DNA repair and recombin 91.2 0.082 2.8E-06 47.2 2.2 23 56-78 20-42 (220)
406 3r20_A Cytidylate kinase; stru 91.2 0.093 3.2E-06 48.7 2.6 23 55-77 8-30 (233)
407 4dzz_A Plasmid partitioning pr 91.1 0.28 9.7E-06 43.2 5.6 33 121-162 76-108 (206)
408 3b5x_A Lipid A export ATP-bind 91.1 0.091 3.1E-06 55.2 2.7 25 55-79 368-392 (582)
409 3bk7_A ABC transporter ATP-bin 91.1 0.082 2.8E-06 56.0 2.3 27 54-80 115-141 (607)
410 1in4_A RUVB, holliday junction 91.1 0.08 2.7E-06 51.4 2.1 23 57-79 52-74 (334)
411 1gvn_B Zeta; postsegregational 91.0 0.11 3.9E-06 49.5 3.1 24 55-78 32-55 (287)
412 3kta_A Chromosome segregation 91.0 0.091 3.1E-06 45.8 2.2 21 58-78 28-48 (182)
413 1n0w_A DNA repair protein RAD5 91.0 0.088 3E-06 47.8 2.2 23 56-78 24-46 (243)
414 2dpy_A FLII, flagellum-specifi 90.9 0.096 3.3E-06 53.2 2.6 26 55-80 156-181 (438)
415 4f4c_A Multidrug resistance pr 90.8 0.098 3.3E-06 60.4 2.9 24 55-78 1104-1127(1321)
416 2og2_A Putative signal recogni 90.8 0.11 3.7E-06 51.5 2.8 23 56-78 157-179 (359)
417 3sr0_A Adenylate kinase; phosp 90.6 0.11 3.7E-06 47.2 2.4 21 57-77 1-21 (206)
418 1uj2_A Uridine-cytidine kinase 90.6 0.11 3.8E-06 48.1 2.6 23 56-78 22-44 (252)
419 1q3t_A Cytidylate kinase; nucl 90.6 0.12 4.1E-06 47.3 2.8 24 55-78 15-38 (236)
420 4a82_A Cystic fibrosis transme 90.5 0.086 2.9E-06 55.4 1.9 37 55-103 366-402 (578)
421 1svm_A Large T antigen; AAA+ f 90.5 0.12 4.1E-06 51.5 2.8 24 55-78 168-191 (377)
422 1zuh_A Shikimate kinase; alpha 90.4 0.11 3.7E-06 44.7 2.1 21 57-77 8-28 (168)
423 3ozx_A RNAse L inhibitor; ATP 90.3 0.1 3.4E-06 54.5 2.1 25 56-80 294-318 (538)
424 1bif_A 6-phosphofructo-2-kinas 90.2 0.12 4.1E-06 52.8 2.6 24 54-77 37-60 (469)
425 3qf4_A ABC transporter, ATP-bi 90.2 0.1 3.5E-06 55.0 2.1 25 55-79 368-392 (587)
426 2grj_A Dephospho-COA kinase; T 90.2 0.12 4.2E-06 46.3 2.4 22 56-77 12-33 (192)
427 1yqt_A RNAse L inhibitor; ATP- 90.1 0.12 4E-06 54.0 2.4 26 55-80 311-336 (538)
428 2ze6_A Isopentenyl transferase 89.9 0.12 4.1E-06 48.2 2.1 21 58-78 3-23 (253)
429 3qf7_A RAD50; ABC-ATPase, ATPa 89.8 0.12 4.1E-06 51.1 2.1 20 58-77 25-44 (365)
430 2f6r_A COA synthase, bifunctio 89.8 0.16 5.3E-06 48.3 2.9 22 56-77 75-96 (281)
431 3bk7_A ABC transporter ATP-bin 89.5 0.13 4.4E-06 54.5 2.2 25 56-80 382-406 (607)
432 3gmt_A Adenylate kinase; ssgci 89.5 0.16 5.3E-06 47.2 2.5 22 56-77 8-29 (230)
433 4fid_A G protein alpha subunit 89.4 0.42 1.4E-05 46.8 5.7 36 121-163 161-196 (340)
434 3b9p_A CG5977-PA, isoform A; A 89.3 0.65 2.2E-05 43.6 6.8 23 56-78 54-76 (297)
435 1nlf_A Regulatory protein REPA 89.2 0.15 5.1E-06 48.0 2.3 23 56-78 30-52 (279)
436 3j16_B RLI1P; ribosome recycli 89.2 0.14 4.7E-06 54.3 2.2 23 58-80 380-402 (608)
437 3cwq_A Para family chromosome 89.0 0.84 2.9E-05 40.9 7.0 33 121-161 68-100 (209)
438 1jbk_A CLPB protein; beta barr 88.7 0.18 6E-06 43.3 2.2 22 56-77 43-64 (195)
439 1azs_C GS-alpha; complex (lyas 88.6 0.37 1.3E-05 48.4 4.7 36 121-163 217-252 (402)
440 1f2t_A RAD50 ABC-ATPase; DNA d 88.4 0.18 6E-06 43.2 1.9 20 58-77 25-44 (149)
441 2dhr_A FTSH; AAA+ protein, hex 88.1 0.13 4.6E-06 53.0 1.2 22 58-79 66-87 (499)
442 3h4m_A Proteasome-activating n 88.1 0.59 2E-05 43.6 5.6 23 56-78 51-73 (285)
443 1t9h_A YLOQ, probable GTPase E 88.0 1.1 3.7E-05 43.2 7.4 49 255-307 116-167 (307)
444 1lv7_A FTSH; alpha/beta domain 87.9 0.21 7E-06 46.2 2.2 22 57-78 46-67 (257)
445 1qhl_A Protein (cell division 87.7 0.039 1.3E-06 51.1 -2.9 21 59-79 30-50 (227)
446 1p5z_B DCK, deoxycytidine kina 87.6 0.19 6.4E-06 46.9 1.7 22 56-77 24-45 (263)
447 4edh_A DTMP kinase, thymidylat 87.4 0.17 5.9E-06 46.1 1.3 22 56-77 6-27 (213)
448 4b4t_L 26S protease subunit RP 87.4 0.64 2.2E-05 47.1 5.7 23 56-78 215-237 (437)
449 1xwi_A SKD1 protein; VPS4B, AA 87.1 1.2 4.1E-05 42.9 7.2 22 57-78 46-67 (322)
450 2ocp_A DGK, deoxyguanosine kin 86.9 0.29 9.8E-06 44.9 2.6 23 56-78 2-24 (241)
451 1vma_A Cell division protein F 86.9 0.29 1E-05 47.2 2.7 23 56-78 104-126 (306)
452 2iw3_A Elongation factor 3A; a 86.9 0.14 4.9E-06 57.0 0.5 26 55-80 698-723 (986)
453 2dr3_A UPF0273 protein PH0284; 86.5 0.28 9.6E-06 44.4 2.2 21 57-77 24-44 (247)
454 2h92_A Cytidylate kinase; ross 86.5 0.27 9.3E-06 44.0 2.1 22 57-78 4-25 (219)
455 1pzn_A RAD51, DNA repair and r 86.4 0.28 9.5E-06 48.1 2.3 24 56-79 131-154 (349)
456 2iw3_A Elongation factor 3A; a 86.4 0.31 1.1E-05 54.3 2.8 25 55-79 460-484 (986)
457 3v9p_A DTMP kinase, thymidylat 86.4 0.35 1.2E-05 44.5 2.8 23 55-77 24-46 (227)
458 4f4c_A Multidrug resistance pr 86.2 0.3 1E-05 56.3 2.8 24 55-78 443-466 (1321)
459 4aby_A DNA repair protein RECN 86.1 0.13 4.6E-06 51.1 -0.2 21 58-78 62-82 (415)
460 3g5u_A MCG1178, multidrug resi 86.1 0.28 9.7E-06 56.4 2.4 25 55-79 415-439 (1284)
461 1a7j_A Phosphoribulokinase; tr 86.0 0.36 1.2E-05 46.0 2.8 23 56-78 5-27 (290)
462 3bos_A Putative DNA replicatio 86.0 0.3 1E-05 43.7 2.1 23 56-78 52-74 (242)
463 3lv8_A DTMP kinase, thymidylat 85.7 0.25 8.7E-06 45.8 1.5 22 56-77 27-48 (236)
464 3ux8_A Excinuclease ABC, A sub 85.6 0.23 7.8E-06 53.1 1.3 22 56-77 348-369 (670)
465 2w58_A DNAI, primosome compone 85.6 0.33 1.1E-05 42.9 2.1 22 57-78 55-76 (202)
466 1tf7_A KAIC; homohexamer, hexa 85.2 0.33 1.1E-05 50.2 2.3 23 56-78 39-63 (525)
467 3umf_A Adenylate kinase; rossm 85.1 0.45 1.5E-05 43.5 2.9 20 58-77 31-50 (217)
468 2p65_A Hypothetical protein PF 85.1 0.26 9.1E-06 42.1 1.2 22 56-77 43-64 (187)
469 3crm_A TRNA delta(2)-isopenten 85.0 0.41 1.4E-05 46.6 2.6 24 55-78 4-27 (323)
470 4hlc_A DTMP kinase, thymidylat 84.9 0.42 1.4E-05 43.2 2.5 23 55-77 1-23 (205)
471 1tue_A Replication protein E1; 84.8 0.27 9.4E-06 44.8 1.2 20 58-77 60-79 (212)
472 1ko7_A HPR kinase/phosphatase; 84.8 0.46 1.6E-05 46.0 2.9 25 56-80 144-168 (314)
473 1zcb_A G alpha I/13; GTP-bindi 84.8 0.4 1.4E-05 47.3 2.6 23 55-77 32-54 (362)
474 3zvl_A Bifunctional polynucleo 84.8 0.42 1.4E-05 48.0 2.7 22 56-77 258-279 (416)
475 3pxg_A Negative regulator of g 84.7 1.2 4.2E-05 45.2 6.2 22 57-78 202-223 (468)
476 4b4t_K 26S protease regulatory 84.6 1.1 3.7E-05 45.3 5.7 22 57-78 207-228 (428)
477 3g5u_A MCG1178, multidrug resi 84.6 0.4 1.4E-05 55.1 2.8 36 56-103 1059-1094(1284)
478 2qmh_A HPR kinase/phosphorylas 84.6 0.68 2.3E-05 42.0 3.7 23 56-78 34-56 (205)
479 2ga8_A Hypothetical 39.9 kDa p 84.3 0.42 1.4E-05 47.2 2.4 22 57-78 25-46 (359)
480 1njg_A DNA polymerase III subu 84.2 0.42 1.4E-05 42.3 2.2 21 58-78 47-67 (250)
481 3qks_A DNA double-strand break 84.1 0.42 1.4E-05 42.9 2.1 20 58-77 25-44 (203)
482 1e69_A Chromosome segregation 84.0 0.5 1.7E-05 45.5 2.8 20 58-77 26-45 (322)
483 1sxj_E Activator 1 40 kDa subu 84.0 0.37 1.3E-05 46.4 1.8 21 58-78 38-58 (354)
484 4b4t_M 26S protease regulatory 83.9 1.1 3.8E-05 45.3 5.4 23 56-78 215-237 (434)
485 2qby_A CDC6 homolog 1, cell di 83.8 0.43 1.5E-05 46.0 2.2 23 56-78 45-67 (386)
486 3d3q_A TRNA delta(2)-isopenten 83.7 0.49 1.7E-05 46.4 2.6 22 57-78 8-29 (340)
487 1g3q_A MIND ATPase, cell divis 83.7 3.8 0.00013 36.7 8.5 32 121-161 112-143 (237)
488 3co5_A Putative two-component 83.3 0.69 2.4E-05 38.7 3.1 21 57-77 28-48 (143)
489 3n70_A Transport activator; si 83.2 0.76 2.6E-05 38.5 3.3 22 56-77 24-45 (145)
490 2chg_A Replication factor C sm 83.1 0.49 1.7E-05 41.4 2.1 20 58-77 40-59 (226)
491 2zan_A Vacuolar protein sortin 82.9 0.4 1.4E-05 48.5 1.7 22 57-78 168-189 (444)
492 1x6v_B Bifunctional 3'-phospho 82.9 0.57 2E-05 49.7 2.9 23 55-77 51-73 (630)
493 3tmk_A Thymidylate kinase; pho 82.7 0.66 2.2E-05 42.4 2.9 22 56-77 5-26 (216)
494 4b4t_J 26S protease regulatory 82.6 1.4 4.8E-05 44.1 5.5 22 57-78 183-204 (405)
495 3ld9_A DTMP kinase, thymidylat 82.6 0.62 2.1E-05 42.8 2.7 23 55-77 20-42 (223)
496 1wwt_A Threonyl-tRNA synthetas 82.5 0.89 3E-05 35.0 3.2 49 353-420 22-71 (88)
497 1tf7_A KAIC; homohexamer, hexa 82.4 0.51 1.8E-05 48.8 2.3 25 55-79 280-304 (525)
498 1w1w_A Structural maintenance 82.2 0.52 1.8E-05 47.3 2.2 22 57-78 27-48 (430)
499 3tqf_A HPR(Ser) kinase; transf 82.2 0.74 2.5E-05 40.9 2.9 23 56-78 16-38 (181)
500 3nbx_X ATPase RAVA; AAA+ ATPas 82.0 0.7 2.4E-05 47.7 3.1 22 57-78 42-63 (500)
No 1
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=6.7e-91 Score=698.33 Aligned_cols=363 Identities=53% Similarity=0.888 Sum_probs=328.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
|+++|+|||.||||||||||+|++. .+.++++||||++|+.|.+.+++.++++|+++++|.+..+.++.||||||+.++
T Consensus 1 m~~kI~IVG~pnvGKSTL~n~Lt~~-~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 79 (363)
T 1jal_A 1 MGFKCGIVGLPNVGKSTLFNALTKA-GIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG 79 (363)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHT-C------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCC-CCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCccc
Confidence 5689999999999999999999954 488999999999999999999999999999999999999999999999999999
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
++.+++++++|++++++||+++||+|++++.++.|+.|++||++|++.++.||.++|++.+++++.++.+..+.+. +.
T Consensus 80 a~~~~gl~~~fl~~ir~ad~il~VvD~~~~~~v~~v~~~~dp~~d~~~i~~EL~~~d~~~~~k~~~~~~k~~k~g~--~~ 157 (363)
T 1jal_A 80 ASKGEGLGNKFLANIRETDAIGHVVRCFENDDIVHVAGKIDPLDDIDTINTELALADLDSCERAIQRLQKRAKGGD--KE 157 (363)
T ss_dssp HHHHGGGTCCHHHHHHTCSEEEEEEECSCC---------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTC--HH
T ss_pred ccccchHHHHHHHHHHhcCeEEEEEecCCCCceeeecCCcChHHHHHHHHHHHHhhhHHHHhhHHHHHHHHhhccc--hh
Confidence 8888899999999999999999999999999999999999999999999999999999999999999887655444 44
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
...+.+++++++++|+++.+++..+|+++|.++++.+++++.||++|++|++++++ . .+.+.+++++++.+++.+++
T Consensus 158 ~~~~~~~l~~~~~~L~~~~~~~~~~~~~~e~~~l~~~~llt~KPvi~v~N~~e~~~-~--~n~~~~~v~~~~~~~~~~~i 234 (363)
T 1jal_A 158 AKFELSVMEKILPVLENAGMIRSVGLDKEELQAIKSYNFLTLKPTMYIANVNEDGF-E--NNPYLDRVREIAAKEGAVVV 234 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHGGGCCSTTSCEEEEEECCTTCS-S--SCHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCHHHHHHHHHhhcccCCcEEEEEecccccc-c--ccHHHHHHHHHHHHcCCCEE
Confidence 56778899999999999999998889999999999999999999999999998776 2 36789999999988888999
Q ss_pred EechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhcchhhhh
Q 014539 295 TISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEK 374 (423)
Q Consensus 295 ~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~ 374 (423)
++||+.|.+|.+|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||||++|+||+||||+|||||+|
T Consensus 235 ~~sA~~E~el~~l~~~e~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~raw~i~~G~ta~~aAg~IH~D~~~ 314 (363)
T 1jal_A 235 PVCAAIESEIAELDDEEKVEFLQDLGIEEPGLNRVIRAGYALLNLQTYFTAGVKEVRAWTVSVGATAPKAAAVIHTDFEK 314 (363)
T ss_dssp EECHHHHHHGGGSCSSTTHHHHTTSSCCSCTTHHHHHHHHHHTTEEEEEEECSSEEEEEEEETTCBHHHHHHTTCTTHHH
T ss_pred EechHHHHHHHhcCHHHHHHHHHHhCcccccHHHHHHHHHHHhCCEEEECCCCCCcceeEecCCCcHHHHHHhhHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 375 GFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 375 ~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 315 gFi~Aev~~~~d~~~~~~~~~~k~~g~~r~egk~y~v~dgDii~f~fn~ 363 (363)
T 1jal_A 315 GFIRAEVIAYEDFIQFNGENGAKEAGKWRLEGKDYIVQDGDVMHFRFNV 363 (363)
T ss_dssp HCCEEEEECHHHHHHTTSHHHHHHTTCCEEECTTCBCCTTCEEEEESCC
T ss_pred ccEEEEEcCHHHHHHhCCHHHHHhcCCeeccCCccEecCCCEEEEEecC
Confidence 9999999999999999999999999999999999999999999999997
No 2
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=100.00 E-value=3.7e-89 Score=691.82 Aligned_cols=366 Identities=43% Similarity=0.724 Sum_probs=302.8
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..++++|+|||.||||||||||+|+|. ...++++||||++|+.|.+.+++.+++.++++++|.+..+.++.||||||+.
T Consensus 19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~-~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~ 97 (396)
T 2ohf_A 19 FGTSLKIGIVGLPNVGKSTFFNVLTNS-QASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLV 97 (396)
T ss_dssp SSSCCCEEEECCSSSSHHHHHHHHHC--------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC--
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHCC-CccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcc
Confidence 356789999999999999999999954 4589999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhcccc-chh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAK-DSQ 211 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~-~~s 211 (423)
++++.+++++++|+.++++||+|+||+|+++++++.|+.+.+||++|++.++.||.+++++.++++++++.+...+ +.
T Consensus 98 ~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i~~v~~~~dP~~di~~i~~El~l~d~~~~~k~~~~~~k~~~~~g~- 176 (396)
T 2ohf_A 98 KGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDDITHVEGSVDPIRDIEIIHEELQLKDEEMIGPIIDKLEKVAVRGGD- 176 (396)
T ss_dssp ---------CCHHHHHHHTSSSEEEEEEC------------CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCSCC------
T ss_pred cccchhhHHHHHHHHHHHhcCeEEEEEecCCCcchhhhcCCCChHHHHHHhhhhhhhhhHHHHHHhhhhhhhhhhcccc-
Confidence 9998899999999999999999999999999999999999999999999999999999999999999998876543 22
Q ss_pred hhhhHHHHHHHHHHHHHHhcC-CCCC-CCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhh-
Q 014539 212 SKLKDAEKAALEKIQQALMDG-KPAR-SVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASD- 288 (423)
Q Consensus 212 a~~~~~~~~ll~~i~~~L~~~-~~~~-~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~- 288 (423)
+....+..+++.+.++|+++ ++++ ..+|+++|.++|++++++|.||+||++|++++++.+. .+.+.+++++++..
T Consensus 177 -~~~~~~~~ll~~i~~~L~e~~~~~~~~~~~~~~e~e~i~~~~llt~KPviy~~Nv~e~~~~~~-~n~~~~~v~~~~~~~ 254 (396)
T 2ohf_A 177 -KKLKPEYDIMCKVKSWVIDQKKPVRFYHDWNDKEIEVLNKHLFLTSKPMVYLVNLSEKDYIRK-KNKWLIKIKEWVDKY 254 (396)
T ss_dssp ----CCHHHHHHHHHHHTTC--CCGGGCCCCCHHHHHHHHHHCCGGGSCEEEEEECCHHHHHHT-CCHHHHHHHHHHHHH
T ss_pred -hhhhhHHHHHHHHHHHHHhcCcchhhcccCCHHHHHHHHHHHHHhCCceEEEEEecHHHhccc-ccHHHHHHHHHHHhh
Confidence 44556788999999999999 7776 3479999999999999999999999999998888644 37788999998765
Q ss_pred -cCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhh
Q 014539 289 -LQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGV 367 (423)
Q Consensus 289 -~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~ 367 (423)
.+.++|++||+.|.+|.+|+++|+++||+++|++ +|+++||+++|++||||+|||+||+|+|||||++|+||+||||+
T Consensus 255 ~~~~~~v~~sa~~E~~l~~l~~~e~~~~l~~~g~~-~~l~~li~~~~~~L~li~~fT~g~~evrawti~~g~ta~~aAg~ 333 (396)
T 2ohf_A 255 DPGALVIPFSGALELKLQELSAEERQKYLEANMTQ-SALPKIIKAGFAALQLEYFFTAGPDEVRAWTIRKGTKAPQAAGK 333 (396)
T ss_dssp STTCEEEEECHHHHHHHHHSCHHHHHHHHHHTTCC-CSHHHHHHHHHHHTTEEEEEEESSSEEEEEEEETTCBHHHHHHT
T ss_pred CCCCeEEEEEcHHHHHHhhCCHHHHHHHHHHhCCC-chHHHHHHHHHHHhCCEEEECCCCCcceeEEecCCCcHHHHHhh
Confidence 3678999999999999999999999999999986 99999999999999999999999999999999999999999999
Q ss_pred cchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 368 IHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 368 IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+|||||
T Consensus 334 IH~D~~~gFi~Aev~~~~d~~~~g~~~~~k~~g~~r~~Gk~y~v~dgDii~f~fn~ 389 (396)
T 2ohf_A 334 IHTDFEKGFIMAEVMKYEDFKEEGSENAVKAAGKYRQQGRNYIVEDGDIIFFKFNT 389 (396)
T ss_dssp TCTHHHHHEEEEEEECHHHHHHHCSHHHHHHTTCCEEECTTCBCCTTCEEEEEEC-
T ss_pred hHHHHHhcceEEEEccHHHHHHhCCHHHHHhcCcccccCCCceeeCCCEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999997
No 3
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=3e-87 Score=679.05 Aligned_cols=368 Identities=41% Similarity=0.660 Sum_probs=342.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
.++.+|||||.||||||||||+|+|...+.++++||||++|+.|.+.+++.|++.++++++|++.++.++.++||||+.+
T Consensus 18 ~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 18 GNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp SSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccccc
Confidence 45689999999999999999999976666999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhc-cccchh-
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKG-KAKDSQ- 211 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~-~~~~~s- 211 (423)
+.+.+++++++|+.+++++|++++|+|++++..+.|+.+.+||++|+.+++.|+.++|++.+++.++++.+. ..++.+
T Consensus 98 ~~s~~e~L~~~fl~~ir~~d~il~Vvd~~~d~~i~~v~~~~dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti 177 (392)
T 1ni3_A 98 GASTGVGLGNAFLSHVRAVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL 177 (392)
T ss_dssp CCCSSSSSCHHHHHHHTTCSEEEEEEECCCTTCSSCCSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhccccceeeeeccccCcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999899999999999999999999999999999999999999999999999999999999999999998877 544311
Q ss_pred -hhhhHHHHHHHHHHHHHHhcC-CCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhc
Q 014539 212 -SKLKDAEKAALEKIQQALMDG-KPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDL 289 (423)
Q Consensus 212 -a~~~~~~~~ll~~i~~~L~~~-~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~ 289 (423)
+....++..+++++.+.|++| ++++..+||++|.++++++++++.||+||++|++++++... .+.+.+++++++.++
T Consensus 178 ~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~~~e~e~i~~~~~lt~kp~~y~~Nv~e~~~~~~-~~~~~~~~~~~~~~~ 256 (392)
T 1ni3_A 178 EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWSNREVEIINSLYLLTAKPVIYLVNMSERDFLRQ-KNKYLPKIKKWIDEN 256 (392)
T ss_dssp SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCCHHHHHHHHTTCCGGGSCEEEEEECCHHHHTTT-CCSSHHHHHHHHHTT
T ss_pred ccccHHHHHHHHHHHHHHhccCCceeecCCCCHHHHHHHHHHhhhccCceEEEEEecchhhccc-chHHHHHHHHHHHhc
Confidence 367778889999999999999 99988889999999999999999999999999999877622 377899999998776
Q ss_pred C--CcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhh
Q 014539 290 Q--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGV 367 (423)
Q Consensus 290 ~--~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~ 367 (423)
+ .+++++||+.|.+|.+|++||+++||+++| .++|++++|+++|++||||+|||+||+|+|||||++||||+||||+
T Consensus 257 ~p~~~~v~~sa~~E~~l~~l~~~~~~~~l~~~g-~~~gl~~~i~~~~~~L~l~~~ft~g~~e~rawti~~G~~a~~aag~ 335 (392)
T 1ni3_A 257 SPGDTLIPMSVAFEERLTNFTEEEAIEECKKLN-TKSMLPKIIVTGYNALNLINYFTCGEDEVRSWTIRKGTKAPQAAGV 335 (392)
T ss_dssp STTCCEEEECHHHHHHHTTSCHHHHHHHHHHTT-CCCSHHHHHHHHHHHTTEEEEEECCSSEEEEEEEETTCBHHHHHHH
T ss_pred CCCCeEEEEEhHHHHHHhhCCHHHHHHHHHHhC-CcccHHHHHHHHHHHhCCEEEECCCCCcceeEEeCCCCcHHHHccc
Confidence 5 789999999999999999999999999999 8999999999999999999999999999999999999999999999
Q ss_pred cchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 368 IHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 368 IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
|||||+|||||||||+|+||++|||+++||++|++|++||||+|||||||+||||+
T Consensus 336 IH~d~~~gfi~ae~~~~~d~~~~g~~~~~k~~g~~r~~gk~y~v~dgdv~~f~f~~ 391 (392)
T 1ni3_A 336 IHTDFEKAFVVGEIMHYQDLFDYKTENACRAAGKYLTKGKEYVMESGDIAHWKAGK 391 (392)
T ss_dssp HCHHHHHTCSEEEEECHHHHHHHTSHHHHHHTTCSCEEETTCBCCTTCEEECC---
T ss_pred cchhhhhccEEEEECCHHHHHHcCCHHHHHHcCCccccCCceeeeCCCEEEEEccC
Confidence 99999999999999999999999999999999999999999999999999999996
No 4
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=100.00 E-value=5.1e-87 Score=673.29 Aligned_cols=363 Identities=52% Similarity=0.808 Sum_probs=326.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhcccccccc----ccCceEEEEecCCCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK----AVPASVEFVDIAGLV 132 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~----~~~~~i~lvDtpGl~ 132 (423)
++|+|||.||||||||||+|++. .+.++++||||++|+.+.+.++++|++.++.+++|.+ ..+.++.||||||+.
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~-~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~ 80 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRA-NALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLV 80 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHH-HTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCcc
Confidence 57999999999999999999955 4778999999999999999999999999999999988 678899999999999
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
++++.+++++++|++++++||+++||+|++++.++.|+.|++||++|+++++.||.++|++.++++++++.+..+. .
T Consensus 81 ~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~~~i~~EL~~~d~~~l~k~~~~~~~~~~~-~-- 157 (368)
T 2dby_A 81 KGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDAEVVETELLLADLATLERRLERLRKEARA-D-- 157 (368)
T ss_dssp CCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-C--
T ss_pred ccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHHHHHhhHHHHccHHHHHHHHHHHHhhhcc-c--
Confidence 9999889999999999999999999999999999999999999999999999999999999999999988765432 2
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 292 (423)
+......++++++.++|+++.+++..+|++++.++++.+.+++.||++|++|++++++.+.+++.+.++++++++.++.+
T Consensus 158 ~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~ 237 (368)
T 2dby_A 158 RERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAE 237 (368)
T ss_dssp GGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCE
T ss_pred hhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCe
Confidence 44566788999999999999988877899889999999999999999999999987765421267889999999888889
Q ss_pred EEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCCCChhhhhhhcchhh
Q 014539 293 RVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDF 372 (423)
Q Consensus 293 ~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~ 372 (423)
++++||++|.+|.+|+++++.+||+++|+.++|++++++++|++||||+|||+||+|+|||||++|+||+||||+|||||
T Consensus 238 vv~iSAk~E~el~eL~~~~~~~~l~~~g~~~~gl~~li~~~~~~L~li~~ft~g~~e~~aw~i~~g~ta~~~a~~IH~d~ 317 (368)
T 2dby_A 238 VVVVSARLEAELAELSGEEARELLAAYGLQESGLQRLARAGYRALDLLTFFTAGEKEVRAWTVRRGTKAPRAAGEIHSDM 317 (368)
T ss_dssp EEEECHHHHHHHHTSCHHHHHHHHHHTTCCSCHHHHHHHHHHHHTTEEEEEEESSSCEEEEEEETTCBHHHHHHHHCHHH
T ss_pred EEEeechhHHHHHHhchHHHHHHHHHhCcchhhHHHHHHHHHHHhCCEEEECCCCCCcceEEecCCCcHHHHHHhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEecC
Q 014539 373 EKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRFNV 423 (423)
Q Consensus 373 ~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f~~ 423 (423)
+|||||||||+|+||++|||+++||++||+|++||||+|||||||+|||||
T Consensus 318 ~~~fi~A~v~~~~d~~~~~~~~~~k~~g~~r~~gk~y~v~dgdi~~~~f~~ 368 (368)
T 2dby_A 318 ERGFIRAEVIPWDKLVEAGGWARAKERGWVRLEGKDYEVQDGDVIYVLFNA 368 (368)
T ss_dssp HHSCCEEEEEEHHHHHHHTSHHHHHHTTCCEEECTTCBCCTTEEEEEEC--
T ss_pred HhhCeEEEEccHHHHHHhCCHHHHHhcCCccccCCCceecCCCEEEEEecC
Confidence 999999999999999999999999999999999999999999999999997
No 5
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=100.00 E-value=5.7e-58 Score=466.70 Aligned_cols=331 Identities=25% Similarity=0.375 Sum_probs=235.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE----ecCCccchhhc-----cccccccccCceEEEEe
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV----AVPDPRLHVLS-----GLSKSQKAVPASVEFVD 127 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~----~~~~~r~~~l~-----~~~~~~~~~~~~i~lvD 127 (423)
++|+|||.||||||||||+|++.. +.++++||||++++.|.+ .+++++++.++ .++++.+ ..++.|||
T Consensus 1 ~kI~ivG~pnvGKSTL~n~L~~~~-~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~--~~~i~lvD 77 (397)
T 1wxq_A 1 MEIGVVGKPNVGKSTFFSAATLVD-VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLA--LIPVKMVD 77 (397)
T ss_dssp CEEEEEECTTSSHHHHHHHHHC---------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEE--EEEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcc--eEEEEEEE
Confidence 589999999999999999999655 889999999999999974 56777755433 1122222 24699999
Q ss_pred cCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecc----cccCCcchHHHhhhhccCcHHHHHHHHHHhh
Q 014539 128 IAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNG----KVDPKSDVDVINLELVFSDLDQIEKRMEKLK 203 (423)
Q Consensus 128 tpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~----~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~ 203 (423)
|||+.++++.+++++++|+.++++||+++||+|++++ .++.+ .+||++|+++++.||.++|++.+++++.++.
T Consensus 78 tpG~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~---~~~~g~~~~~~dp~~d~~~i~~EL~~~d~~~l~~~~~~~~ 154 (397)
T 1wxq_A 78 VAGLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK---TDPEGQPTDYHDPVEDIEFLEREIDYWIYGILSKGWDKFA 154 (397)
T ss_dssp CC---------------CCCSSTTCSEEEEEEETTCC---BCTTSCBCSCCCHHHHHHHHHHHHHHHHHHHHHTTTHHHH
T ss_pred CCCcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc---cCCCCcccCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 9999988888888999999999999999999999886 22333 5599999999999999999999999999988
Q ss_pred hccccchhhhhh-HHH----------HHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCC
Q 014539 204 KGKAKDSQSKLK-DAE----------KAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD 272 (423)
Q Consensus 204 ~~~~~~~sa~~~-~~~----------~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~ 272 (423)
+..+.+. ... ... .+.+.++.+.|..+.+. .+||+++...+..+.+++.+|++|++||+|..
T Consensus 155 k~~~~~~--~~~~~~~~~~l~g~~~~~~~~~~~l~~l~~~~~~--~~~~~~e~~~l~~~~~~~~kP~i~v~NK~D~~--- 227 (397)
T 1wxq_A 155 KRIKLQK--IKLESAIAEHLSGIGVNENDVWEAMHKLNLPEDP--TKWSQDDLLAFASEIRRVNKPMVIAANKADAA--- 227 (397)
T ss_dssp STTTSSC--CCHHHHHHHHTGGGTCCHHHHHHHHHHTTCCSCG--GGCCHHHHHHHHHHHHHHHSCEEEEEECGGGS---
T ss_pred HHHhhcC--ccHHHHHHHHhcccCCCHHHHHHHHHHhccCCcc--ccCCHHHHHHHHHhhhccCCCEEEEEeCcccc---
Confidence 6544332 111 011 23566677777777663 37998888888888888999999999999642
Q ss_pred CCCCcchHHHHHHHhhcCCcEEEechhhhHhhcC---------------------CChHHHH-------HHHHHcCCCCC
Q 014539 273 PGSNPHVNEVMNLASDLQSGRVTISAQVEAELTE---------------------LPSEERV-------EYLASLGVSES 324 (423)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~---------------------l~~ee~~-------~~l~~~g~~~~ 324 (423)
. +.+++++.+.+...+.+++++||+.|.++.+ |++++++ +||+.+| ++
T Consensus 228 ~--~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~~~l~~~~p~~~~~~~~~~l~~~~~~~~e~ire~~l~~~g--~~ 303 (397)
T 1wxq_A 228 S--DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAKAGFIEYIPGASEFKVLRDMSEKQKRALMVIKEKVLDRFG--ST 303 (397)
T ss_dssp C--HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSSSCCCCSCC-----------------CTTHHHHHHTSSSS--SC
T ss_pred c--hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHhhhhhhhcCCCccccccccCCHHHHHHHHHHHHHHHHHhC--cc
Confidence 2 4556677666554567899999999999976 3455544 6777888 79
Q ss_pred hhhHHHH-HHHhhhCCEEEecCCC----------CCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCH
Q 014539 325 GLGNLIR-STYSLLGLRTYFTSGE----------KETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSL 393 (423)
Q Consensus 325 ~~~~li~-~~~~~L~li~~fT~g~----------~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~ 393 (423)
|++++|+ ++|++||||+|||+|+ ++++||++++|+||+|+|++|||||+++|++|+
T Consensus 304 g~~~~i~~~~~~~L~li~vft~~~~~~~~~~~g~~~~~~~~l~~G~t~~d~a~~iH~d~~~~f~~a~------------- 370 (397)
T 1wxq_A 304 GVQEVINRVVFDLLKLIPVYPVHDENKLTDQFGNVLPHVFLMKKGSTPRDLAFKVHTDLGKGFLYAI------------- 370 (397)
T ss_dssp SHHHHHHHHHHTTSCEEEEEEESCC-----CCSCSSCCCEEEETTCCHHHHHHHHCHHHHHTEEEEE-------------
T ss_pred hHHHHHHHHHHHHhCCeEEEeecccccccCCcCcccceeEEeCCCCCHHHHHHHHhHHHHhhhhhhH-------------
Confidence 9999996 6699999999999873 477999999999999999999999999999998
Q ss_pred HHHHHcCCccccCCCceecCCCEEEEEe
Q 014539 394 AAAREKGLLRSEGKDYIVQEGDVMLFRF 421 (423)
Q Consensus 394 ~~~k~~g~~r~~Gkdy~v~dgDii~~~f 421 (423)
+..|+. ++|++|+|+|||||+|.-
T Consensus 371 ---~~~~~~-~~g~~~~l~dgDvv~i~~ 394 (397)
T 1wxq_A 371 ---NARTKR-RVGEDYELQFNDIVKIVS 394 (397)
T ss_dssp ---ETTTCS-BCCTTCCCCTTEEEEEEE
T ss_pred ---HhcCCE-EcCCCccccCCCEEEEEe
Confidence 123555 589999999999999974
No 6
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.2e-58 Score=462.17 Aligned_cols=291 Identities=19% Similarity=0.288 Sum_probs=214.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|||||+||||||||||+|| +..+.++++||||++|+.|++.+++ .+++|+||||+++++
T Consensus 72 ~a~V~ivG~PNvGKSTL~n~Lt-~~~~~v~~~pftT~~~~~g~~~~~~-----------------~~i~l~D~pGl~~~a 133 (376)
T 4a9a_A 72 VASVGFVGFPSVGKSTLLSKLT-GTESEAAEYEFTTLVTVPGVIRYKG-----------------AKIQMLDLPGIIDGA 133 (376)
T ss_dssp SEEEEEECCCCHHHHHHHHHHH-SBCCCGGGTCSSCCCEEEEEEEETT-----------------EEEEEEECGGGCCC-
T ss_pred CCeEEEECCCCCCHHHHHHHHh-CCCCcccCCCCceeeeeeEEEEeCC-----------------cEEEEEeCCCccCCc
Confidence 4699999999999999999999 5568899999999999999999988 679999999999999
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHh-hhccccchhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKL-KKGKAKDSQSKL 214 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~-~~~~~~~~sa~~ 214 (423)
+.+.+++++|++++++||+|+||+|++ ||+++++.++.||..+++...++..... .+..+.+
T Consensus 134 ~~~~~~g~~~l~~i~~ad~il~vvD~~------------~p~~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~g----- 196 (376)
T 4a9a_A 134 KDGRGRGKQVIAVARTCNLLFIILDVN------------KPLHHKQIIEKELEGVGIRLNKTPPDILIKKKEKGG----- 196 (376)
T ss_dssp ----CHHHHHHHHHHHCSEEEEEEETT------------SHHHHHHHHHHHHHHTTEEETCCCCCEEEEECSSSC-----
T ss_pred hhhhHHHHHHHHHHHhcCccccccccC------------ccHHHHHHHHHHHHHhhHhhccCChhhhhhHhhhhh-----
Confidence 999999999999999999999999986 6788899998888766543221111000 0000000
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
+..........++.++...+...++++.+|++|++|+.++++. + +.+.......+++
T Consensus 197 --------------i~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~~nv~eddl~--------d-~~~~~~~~~~p~i 253 (376)
T 4a9a_A 197 --------------ISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFRCDATVDDLI--------D-VLEASSRRYMPAI 253 (376)
T ss_dssp --------------EEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEECSCCCHHHHH--------H-HHTTTTCEEECEE
T ss_pred --------------hhhhcchhhhhccHHHHHHHHHHhcccCCCeeecccCCHHHHH--------H-HHHHHHhhccceE
Confidence 0111112223567777777777888899999999998865432 1 2211222234677
Q ss_pred EechhhhHhhcCCChHHHHH------HHHHcCCCCChhhHHHHHHHhhhCCEEEecCCCCCcceEEecCC-----CChhh
Q 014539 295 TISAQVEAELTELPSEERVE------YLASLGVSESGLGNLIRSTYSLLGLRTYFTSGEKETKAWTIRAG-----MTAPQ 363 (423)
Q Consensus 295 ~~Sa~~e~~i~~l~~ee~~~------~l~~~g~~~~~~~~li~~~~~~L~li~~fT~g~~e~raw~i~~g-----sta~~ 363 (423)
.++++.+. ++.|+... ++...+..++|+++|++++|++||||+|||+||+|+|||+++.| +|+.|
T Consensus 254 ~v~nKid~----~~~eele~l~~~~~~~~is~~~e~gLd~Li~~~y~~L~Li~~fT~g~~E~rawt~~~~~~a~~at~~D 329 (376)
T 4a9a_A 254 YVLNKIDS----LSIEELELLYRIPNAVPISSGQDWNLDELLQVMWDRLNLVRIYTKPKGQIPDFTDPVVLRSDRCSVKD 329 (376)
T ss_dssp EEEECGGG----SCHHHHHHHTTSTTEEECCTTTCTTHHHHHHHHHHHHCCEEEEECCSSSCCCSSSCEEEBTTBCBHHH
T ss_pred EEEecccc----cCHHHHHHHhcccchhhhhhhhcccchhHHHHHHHHcCCcEEEeCCCCCcCCCCccccccCCCCcHHH
Confidence 77776542 22222211 12223456789999999999999999999999999999997665 55567
Q ss_pred hhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 364 AAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 364 ~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
+|+.||+||.++|+||+|||- .||.+| |+|||||+|||||||+|-
T Consensus 330 ~a~~ih~d~~~~F~~a~v~Gs----------~~K~~~--r~eGkdyvv~DGDVi~iv 374 (376)
T 4a9a_A 330 FCNQIHKSLVDDFRNALVYGS----------SVKHQP--QYVGLSHILEDEDVVTIL 374 (376)
T ss_dssp HHHHHCGGGGGGEEEEEEEST----------TSSSSS--EEECTTCBCCTTCEEEEE
T ss_pred HHHHHHHHHHHhhhHhhhcCc----------ccCCCC--CccCCCcEEcCCCEEEEE
Confidence 799999999999999999973 267666 689999999999999985
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.81 E-value=6.1e-20 Score=180.39 Aligned_cols=189 Identities=20% Similarity=0.259 Sum_probs=139.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecC-CccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVP-DPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~-~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
....|+++|.||||||||+|+|+|...+.+++.|+||++...+....+ + .++.||||||+.+
T Consensus 9 ~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~~~-----------------~~i~lvDTPG~~~ 71 (308)
T 3iev_A 9 KVGYVAIVGKPNVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIPNE-----------------AQIIFLDTPGIYE 71 (308)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETTT-----------------EEEEEEECCCCCC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEecCCC-----------------CeEEEEECcCCCc
Confidence 346899999999999999999998888889999999999999998776 4 6799999999986
Q ss_pred CC--Cc-ccchhhHHhhhhhhcceEEEEEeccCCcc-----------------eeeecccccCCcchHHHhhhhccCcHH
Q 014539 134 GA--SQ-GEGLGNKFLSHIREVDSILQVVRCFEDND-----------------IVHVNGKVDPKSDVDVINLELVFSDLD 193 (423)
Q Consensus 134 ~~--~~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~~-----------------~~~~~~~~dp~~d~~~i~~El~l~d~~ 193 (423)
.. .. ++.+...+...+++||++++|+|+++... ++.+.|+.|...+-..+
T Consensus 72 ~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~~~~---------- 141 (308)
T 3iev_A 72 PKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPAKNV---------- 141 (308)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSGGGG----------
T ss_pred cccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCHHHH----------
Confidence 55 22 33444566788999999999999986421 34455666654211111
Q ss_pred HHHHHHHHhhhcc-----ccchhhhhhHHHHHHHHHHHHHHhcCCCCCCC-CCChH-----HHHHHH-HHhhhhCcceEE
Q 014539 194 QIEKRMEKLKKGK-----AKDSQSKLKDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIY 261 (423)
Q Consensus 194 ~~e~~~~~~~~~~-----~~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----e~e~ir-~~~~~t~kpi~~ 261 (423)
......+.... .-..||+++.++.++++.+.+.++++++.++. .+|+. -.+++| +++..+..++||
T Consensus 142 --~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~~~~~~~~~~~~td~~~~~~~~e~irek~~~~~~~eiP~ 219 (308)
T 3iev_A 142 --LPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLPEGEPLFPEDMITDLPLRLLAAEIVREKAMMLTREEVPT 219 (308)
T ss_dssp --HHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSCBCCCSSCTTCCBCCCHHHHHHHHHHHHHHHTCCTTHHH
T ss_pred --HHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCccCCCCCCcccccCCCHHHHHHHHHHHHHHhhhhhhcCC
Confidence 11111111111 01125788999999999999999999998876 35544 267788 678889999999
Q ss_pred eeeccccccCC
Q 014539 262 VANVAESDLAD 272 (423)
Q Consensus 262 v~N~~~~d~~~ 272 (423)
.+.+..+.+.+
T Consensus 220 ~~~v~i~~~~~ 230 (308)
T 3iev_A 220 SIAVKINEIKP 230 (308)
T ss_dssp HCEEEEEEEEE
T ss_pred eeEEEeEEEEE
Confidence 99998877753
No 8
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.79 E-value=2.9e-19 Score=175.14 Aligned_cols=186 Identities=20% Similarity=0.204 Sum_probs=132.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+|||.||||||||+|+|+|...+.+++.|+||++...+.+..++ .++.||||||+.++.+
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~~-----------------~~l~l~DTpG~~~~~~ 70 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEGR-----------------RQIVFVDTPGLHKPMD 70 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEETT-----------------EEEEEEECCCCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEeCC-----------------cEEEEecCccccchhh
Confidence 57999999999999999999988888889999999998888776544 6799999999986544
Q ss_pred c-ccchhhHHhhhhhhcceEEEEEeccCCcc------------------eeeecccccCCcchHHHhhhhccCcHHHHHH
Q 014539 137 Q-GEGLGNKFLSHIREVDSILQVVRCFEDND------------------IVHVNGKVDPKSDVDVINLELVFSDLDQIEK 197 (423)
Q Consensus 137 ~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~~------------------~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~ 197 (423)
. ++.+...+..++++||++++|+|+++... ++.+.|+.|....-. .+..
T Consensus 71 ~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~------------~~~~ 138 (301)
T 1wf3_A 71 ALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYPE------------EAMK 138 (301)
T ss_dssp HHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSHH------------HHHH
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCchH------------HHHH
Confidence 3 23344566788999999999999975421 122223333221110 0111
Q ss_pred HHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHhcCCCCCCC-CC-ChH-H----HHHHH-HHhhhhCcceEEeeecccc
Q 014539 198 RMEKLKKGKA-KDSQSKLKDAEKAALEKIQQALMDGKPARSV-TL-NDF-E----RDSIK-QLCLLTMKPIIYVANVAES 268 (423)
Q Consensus 198 ~~~~~~~~~~-~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~-t~~-e----~e~ir-~~~~~t~kpi~~v~N~~~~ 268 (423)
....+..... -..||+++.++..+++.+.+.+++++++|+. .+ |+. + .+++| +++..+..++||.+.+..+
T Consensus 139 ~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l~~~~~~y~~~~~~td~~~~~~~~e~~Re~~~~~l~~eiP~~~~v~i~ 218 (301)
T 1wf3_A 139 AYHELLPEAEPRMLSALDERQVAELKADLLALMPEGPFFYPEDYAKSDQTFGEWVAEILREEAMKRLWHEVPYAVATKVE 218 (301)
T ss_dssp HHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTCCBCCCSSCTTCCSBSSCHHHHHHHHHHHHHHHTCCTTHHHHCEEEEE
T ss_pred HHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhcccCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhcccCceEEEEEE
Confidence 1222100000 0125788999999999999999999888875 35 544 2 57777 7777899999999999887
Q ss_pred ccC
Q 014539 269 DLA 271 (423)
Q Consensus 269 d~~ 271 (423)
.+.
T Consensus 219 ~~~ 221 (301)
T 1wf3_A 219 EVA 221 (301)
T ss_dssp EEE
T ss_pred EEE
Confidence 775
No 9
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.78 E-value=1.9e-19 Score=179.50 Aligned_cols=90 Identities=41% Similarity=0.731 Sum_probs=80.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+|||+||||||||+|+|+ .....++++||||.+|+.+.+.+++. ..+.||||||++.+++
T Consensus 159 a~V~lvG~~nvGKSTLln~L~-~~~~~i~~~~ftTl~p~~g~v~~~~~----------------~~~~l~DtPG~i~~a~ 221 (342)
T 1lnz_A 159 ADVGLVGFPSVGKSTLLSVVS-SAKPKIADYHFTTLVPNLGMVETDDG----------------RSFVMADLPGLIEGAH 221 (342)
T ss_dssp CCEEEESSTTSSHHHHHHHSE-EECCEESSTTSSCCCCCEEEEECSSS----------------CEEEEEEHHHHHHHTT
T ss_pred CeeeeeCCCCCCHHHHHHHHH-cCCCccccCCccccCceEEEEEeCCC----------------ceEEEecCCCCccccc
Confidence 579999999999999999999 55567899999999999999888752 3599999999998888
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+++..|+.+++.||+++||+|+++
T Consensus 222 ~~~~l~~~fl~~i~~~d~ll~VvD~s~ 248 (342)
T 1lnz_A 222 QGVGLGHQFLRHIERTRVIVHVIDMSG 248 (342)
T ss_dssp CTTTTHHHHHHHHHHCCEEEEEEESSC
T ss_pred ccchhHHHHHHHHHhccEEEEEEECCc
Confidence 788899999999999999999999865
No 10
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.76 E-value=4.3e-18 Score=176.87 Aligned_cols=97 Identities=30% Similarity=0.390 Sum_probs=82.4
Q ss_pred hccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 50 ~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
++..+.+++|+|+|.||||||||+|+|++...+.++++|+||+++..+.+.+++ ..+.|||||
T Consensus 237 ~~~~r~~~kV~ivG~pnvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g-----------------~~~~l~DTa 299 (482)
T 1xzp_A 237 GILLNRGLRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG-----------------ILFRIVDTA 299 (482)
T ss_dssp HHHHHHCEEEEEECCHHHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT-----------------EEEEEEESS
T ss_pred hhhccCCCEEEEECcCCCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC-----------------eEEEEEECC
Confidence 344455689999999999999999999987778899999999999999988866 569999999
Q ss_pred CCc-CCCCcccchh-hHHhhhhhhcceEEEEEeccC
Q 014539 130 GLV-KGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 130 Gl~-~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
|+. .+.+..+.++ ..++.+++.||++|+|+|+++
T Consensus 300 G~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 335 (482)
T 1xzp_A 300 GVRSETNDLVERLGIERTLQEIEKADIVLFVLDASS 335 (482)
T ss_dssp CCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTS
T ss_pred CccccchhhHHHHHHHHHHHHhhcccEEEEEecCCC
Confidence 998 7666555555 456889999999999999864
No 11
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.76 E-value=1.8e-18 Score=173.89 Aligned_cols=88 Identities=24% Similarity=0.397 Sum_probs=61.6
Q ss_pred CcE-EEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 56 SLR-AGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 56 ~~~-I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
+++ |+|+|+||||||||+|+|+| ....++++|++|+++..+.+.+++ ..+.++||||++..
T Consensus 178 ~~~~V~lvG~~naGKSTLln~L~~-~~~~~~~~~~~T~d~~~~~i~~~g-----------------~~v~l~DT~G~i~~ 239 (364)
T 2qtf_A 178 NIPSIGIVGYTNSGKTSLFNSLTG-LTQKVDTKLFTTMSPKRYAIPINN-----------------RKIMLVDTVGFIRG 239 (364)
T ss_dssp -CCEEEEECBTTSSHHHHHHHHHC-C-----------CCSCEEEEEETT-----------------EEEEEEECCCBCSS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHC-CCccccCCcccccCCEEEEEEECC-----------------EEEEEEeCCCchhc
Confidence 455 99999999999999999995 446788999999999999998876 45899999998754
Q ss_pred CCcccchh---hHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLG---NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~---~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+ ..+. ..++..++.||+++||+|+++
T Consensus 240 lp--~~lve~f~~tl~~~~~aD~il~VvD~s~ 269 (364)
T 2qtf_A 240 IP--PQIVDAFFVTLSEAKYSDALILVIDSTF 269 (364)
T ss_dssp CC--GGGHHHHHHHHHGGGGSSEEEEEEETTS
T ss_pred CC--HHHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 32 2222 345677899999999999864
No 12
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=99.75 E-value=2.7e-19 Score=142.82 Aligned_cols=77 Identities=19% Similarity=0.189 Sum_probs=68.9
Q ss_pred HHhhhCCEEEecCCCC----CcceEEe-cCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCC
Q 014539 333 TYSLLGLRTYFTSGEK----ETKAWTI-RAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGK 407 (423)
Q Consensus 333 ~~~~L~li~~fT~g~~----e~raw~i-~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gk 407 (423)
.|+.|+||++||+.+. -.+|.++ ++|+|+.|+|.+||+||.+.|+||.||+.+ ||..| |++|.
T Consensus 5 ~~~~L~lIrVYtk~~G~~pd~~dpviL~~~GsTv~Dfa~~IH~di~~~fkyA~VwG~s----------aK~~~--qrVgl 72 (93)
T 2eki_A 5 SSGYLKLVRIYTKPKGQLPDYTSPVVLPYSRTTVEDFCMKIHKNLIKEFKYALVWGLS----------VKHNP--QKVGK 72 (93)
T ss_dssp SSSSCCEEEEEECCTTSCCCSSSCEEEETTSCCHHHHHHHHCTTCTTTEEEEEEBSTT----------SSSSS--EEECS
T ss_pred ChhhcCeEEEEeCCCCCCCCCCCCEEEecCCCCHHHHHHHHHHHHHhhccEEEEeccc----------ccCCC--EECCC
Confidence 4789999999996644 4689999 999999999999999999999999999976 78766 47999
Q ss_pred CceecCCCEEEEEe
Q 014539 408 DYIVQEGDVMLFRF 421 (423)
Q Consensus 408 dy~v~dgDii~~~f 421 (423)
+|+|+|||||+|--
T Consensus 73 dh~L~d~DVV~Iv~ 86 (93)
T 2eki_A 73 DHTLEDEDVIQIVK 86 (93)
T ss_dssp SCCCCSSEEECEEE
T ss_pred CcEecCCCEEEEEe
Confidence 99999999999864
No 13
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.75 E-value=4.7e-18 Score=173.39 Aligned_cols=90 Identities=39% Similarity=0.741 Sum_probs=77.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
...|+|||+||||||||+|+|+ .....++++|++|..|+.+.+.+++ ...+.++||||++++.
T Consensus 157 g~~VgLVG~~gAGKSTLL~~Ls-g~~~~i~~~~ftTl~p~~G~V~~~~----------------~~~~~l~DtpGli~~a 219 (416)
T 1udx_A 157 IADVGLVGYPNAGKSSLLAAMT-RAHPKIAPYPFTTLSPNLGVVEVSE----------------EERFTLADIPGIIEGA 219 (416)
T ss_dssp SCSEEEECCGGGCHHHHHHHHC-SSCCEECCCTTCSSCCEEEEEECSS----------------SCEEEEEECCCCCCCG
T ss_pred CCEEEEECCCCCcHHHHHHHHH-cCCccccCcccceecceeeEEEecC----------------cceEEEEeccccccch
Confidence 3579999999999999999999 4556789999999999999987764 1358999999998877
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+...+++..|+.++..||.+++|+|++
T Consensus 220 ~~~~~L~~~fl~~~era~~lL~vvDls 246 (416)
T 1udx_A 220 SEGKGLGLEFLRHIARTRVLLYVLDAA 246 (416)
T ss_dssp GGSCCSCHHHHHHHTSSSEEEEEEETT
T ss_pred hhhhhhhHHHHHHHHHHHhhhEEeCCc
Confidence 766677788899999999999999975
No 14
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.71 E-value=9.2e-18 Score=164.33 Aligned_cols=187 Identities=19% Similarity=0.160 Sum_probs=130.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc-CCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV-KGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~-~~~ 135 (423)
.+|+|+|.||||||||+|+|+|...+.+++.|+||++...+.+...+ .++.++||||+. ...
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~~-----------------~~i~~iDTpG~~~~~~ 71 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEGA-----------------YQAIYVDTPGLHMEEK 71 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEETT-----------------EEEEEESSSSCCHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEECC-----------------eeEEEEECcCCCccch
Confidence 57999999999999999999988777889999999999888876654 679999999985 221
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEeccCCc---------------ceeeecccccCCcchHHHhhhhccCcHHHHHHHH
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCFEDN---------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRM 199 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~~~~---------------~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~ 199 (423)
.. ++.+...+...++.+|++++|+|+++-. .++.+.|+.|...+... +...+
T Consensus 72 ~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~~~~------------~~~~l 139 (301)
T 1ega_A 72 RAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDNVQEKAD------------LLPHL 139 (301)
T ss_dssp HHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHHHHHHHHHHHSSSSCEEEEEESTTTCCCHHH------------HHHHH
T ss_pred hhHHHHHHHHHHHHHhcCCEEEEEEeCCCCCHHHHHHHHHHHhcCCCEEEEEECcccCccHHH------------HHHHH
Confidence 10 1112223456788999999999986411 12334455655431111 11222
Q ss_pred HHhhhcccc----chhhhhhHHHHHHHHHHHHHHhcCCCCCCC-CCChH-----HHHHHH-HHhhhhCcceEEeeecccc
Q 014539 200 EKLKKGKAK----DSQSKLKDAEKAALEKIQQALMDGKPARSV-TLNDF-----ERDSIK-QLCLLTMKPIIYVANVAES 268 (423)
Q Consensus 200 ~~~~~~~~~----~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~-~~t~~-----e~e~ir-~~~~~t~kpi~~v~N~~~~ 268 (423)
..+...... ..||.++.++..+++.+.+.+++++++|+. .+|+. ..+++| +++..+..++||.+.+..+
T Consensus 140 ~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l~~~~~~~~~~~~~d~~~~~~~~e~~re~l~~~l~~e~p~~~~v~i~ 219 (301)
T 1ega_A 140 QFLASQMNFLDIVPISAETGLNVDTIAAIVRKHLPEATHHFPEDYITDRSQRFMASEIIREKLMRFLGAELPYSVTVEIE 219 (301)
T ss_dssp HHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTCCBCCCSSCTTCCSCCSHHHHHHHHHHHHHHHHHGGGCCTTEEEEEE
T ss_pred HHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhCCcCCCCCCccccCCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEE
Confidence 222211110 124788889999999999999999888875 34443 266777 7777899999999988877
Q ss_pred ccCC
Q 014539 269 DLAD 272 (423)
Q Consensus 269 d~~~ 272 (423)
++.+
T Consensus 220 ~~~~ 223 (301)
T 1ega_A 220 RFVS 223 (301)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 6653
No 15
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.71 E-value=2.7e-17 Score=147.00 Aligned_cols=93 Identities=23% Similarity=0.305 Sum_probs=73.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
.+.+|+|+|.||||||||+|+|++...+.++++|++|++...+.+.+.+ ..+.+|||||+...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 65 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDG-----------------MPLHIIDTAGLREA 65 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETT-----------------EEEEEEECCCCSCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECC-----------------eEEEEEECCCcccc
Confidence 3579999999999999999999976666788899999999888887765 45899999999654
Q ss_pred CCcccch-hhHHhhhhhhcceEEEEEeccCC
Q 014539 135 ASQGEGL-GNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 135 ~~~~~~l-~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
....+.. ....+.+++++|++++|+|+++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~ 96 (172)
T 2gj8_A 66 SDEVERIGIERAWQEIEQADRVLFMVDGTTT 96 (172)
T ss_dssp SSHHHHHHHHHHHHHHHTCSEEEEEEETTTC
T ss_pred hhHHHHHHHHHHHHHHHhCCEEEEEEECCCC
Confidence 3322211 12345678999999999998653
No 16
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.71 E-value=6.1e-17 Score=166.44 Aligned_cols=89 Identities=34% Similarity=0.389 Sum_probs=62.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+|||+||||||||||+|++...+.+++.|++|++...+.+.+.+ .++.+|||||+.....
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 64 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYG-----------------KTFKLVDTCGVFDNPQ 64 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETT-----------------EEEEEEECTTTTSSGG
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECC-----------------eEEEEEECCCcccccc
Confidence 58999999999999999999987777899999999999999988876 4689999999975432
Q ss_pred c--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 Q--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .+.+..++..++++||++++|+|+.
T Consensus 65 ~~~~~~~~~~~~~~~~~ad~il~V~D~~ 92 (439)
T 1mky_A 65 DIISQKMKEVTLNMIREADLVLFVVDGK 92 (439)
T ss_dssp GCCCHHHHHHHHHHHTTCSEEEEEEETT
T ss_pred chHHHHHHHHHHHHHHhCCEEEEEEECC
Confidence 1 2345567788899999999999975
No 17
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=4.2e-17 Score=169.28 Aligned_cols=99 Identities=24% Similarity=0.274 Sum_probs=53.4
Q ss_pred hhccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 49 SASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 49 ~~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
+++..+.+++|+|+|.||||||||+|+|++...+.++++|+||++.....+.+.+ ..+.||||
T Consensus 226 ~~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g-----------------~~l~liDT 288 (476)
T 3gee_A 226 HGRIVSEGVSTVIAGKPNAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK-----------------TMFRLTDT 288 (476)
T ss_dssp HHHHHHHCEEEEEECCTTSSHHHHHHHCC------------------CEEEEETT-----------------EEEEEEC-
T ss_pred hhHhhcCCCEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC-----------------eEEEEEEC
Confidence 3445556789999999999999999999977778899999999999988888766 56999999
Q ss_pred CCCcCCCCcccchh-hHHhhhhhhcceEEEEEeccCC
Q 014539 129 AGLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 129 pGl~~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
||+....+..+.++ ...+..+++||++++|+|+++.
T Consensus 289 ~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~ 325 (476)
T 3gee_A 289 AGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTE 325 (476)
T ss_dssp -------------------CCCSSCSEEEEEEETTTC
T ss_pred CCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCC
Confidence 99976544333332 4567789999999999998643
No 18
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.69 E-value=7.5e-17 Score=155.70 Aligned_cols=89 Identities=27% Similarity=0.447 Sum_probs=69.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||||+|+|. ...++++|++|+++..+.+...+ ..+.+|||||+....
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~-~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDtpG~~~~~ 64 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS-RQRVGNWAGVTVERKEGQFSTTD-----------------HQVTLVDLPGTYSLT 64 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT-CEEEEECTTSSSEEEEEEEECSS-----------------CEEEEEECCCCSCSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeeEEEEEEEEEeCC-----------------CceEEEECcCCCccc
Confidence 479999999999999999999955 47899999999999999988765 458999999997654
Q ss_pred Ccc--cchhhHHhh---hhhhcceEEEEEecc
Q 014539 136 SQG--EGLGNKFLS---HIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~--~~l~~~~l~---~ir~aD~il~Vvd~~ 162 (423)
+.. ..+...+.. ..+.+|++++|+|++
T Consensus 65 ~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~ 96 (274)
T 3i8s_A 65 TISSQTSLDEQIACHYILSGDADLLINVVDAS 96 (274)
T ss_dssp C----CCHHHHHHHHHHHHTCCSEEEEEEEGG
T ss_pred cccccCCHHHHHHHHHHhhcCCCEEEEEecCC
Confidence 211 122222222 247999999999975
No 19
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.69 E-value=5.3e-17 Score=155.36 Aligned_cols=87 Identities=29% Similarity=0.471 Sum_probs=69.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||||+|+| ....++++|++|++...+.+.+.+ ..+.+|||||+....+
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g-~~~~v~~~pg~Tv~~~~~~~~~~~-----------------~~~~lvDtpG~~~~~~ 63 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTN-ANQRVGNWPGVTVEKKTGEFLLGE-----------------HLIEITDLPGVYSLVA 63 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHT-TSEEEEECTTSSSEEEEEEEEETT-----------------EEEEEEECCCCSSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHC-CCCCccCCCCceEEEEEEEEEECC-----------------eEEEEEeCCCcccccc
Confidence 5899999999999999999995 457899999999999999988776 4699999999976543
Q ss_pred ------cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 ------QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ------~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..+.+...++.. +++|++++|+|++
T Consensus 64 ~~~~~~~~e~i~~~~~~~-~~~d~vi~VvDas 94 (256)
T 3iby_A 64 NAEGISQDEQIAAQSVID-LEYDCIINVIDAC 94 (256)
T ss_dssp -----CHHHHHHHHHHHH-SCCSEEEEEEEGG
T ss_pred cccCCCHHHHHHHHHHhh-CCCCEEEEEeeCC
Confidence 122232333322 7899999999975
No 20
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.67 E-value=7.7e-16 Score=136.13 Aligned_cols=87 Identities=25% Similarity=0.431 Sum_probs=61.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|.||||||||+|+|+ +....++++|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~-~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~~ 65 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLTA 65 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHH-CCSSSCC-----CCCCCEEEEEETT-----------------EEEEEEECCCCSCSSS
T ss_pred cEEEEECCCCCCHHHHHHHHh-CCCeeccCCCCcceeeeEEEEEECC-----------------cEEEEEECCCcccCCC
Confidence 689999999999999999999 4445677889999999888887655 4699999999976432
Q ss_pred cc--cchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QG--EGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~--~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. +.+...++. ..++|++++|+|++
T Consensus 66 ~~~~~~~~~~~~~-~~~~~~~i~v~D~~ 92 (165)
T 2wji_A 66 NSIDEIIARDYII-NEKPDLVVNIVDAT 92 (165)
T ss_dssp SSHHHHHHHHHHH-HHCCSEEEEEEETT
T ss_pred cchhHHHHHHHHh-cCCCCEEEEEecCC
Confidence 11 122222221 14899999999974
No 21
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.66 E-value=1.4e-15 Score=135.00 Aligned_cols=154 Identities=15% Similarity=0.157 Sum_probs=98.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.........|.++.+.....+.+++.. ..+.+|||||....
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~ 73 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVK---------------VKLQMWDTAGQERF 73 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEE---------------EEEEEEECCCC---
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 347999999999999999999996554444555666666655555555422 46999999997433
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
. ......++++|++++|+|+++... ++ .
T Consensus 74 ~-------~~~~~~~~~~d~ii~v~d~~~~~s-------------~~---------------~----------------- 101 (180)
T 2g6b_A 74 R-------SVTHAYYRDAHALLLLYDVTNKAS-------------FD---------------N----------------- 101 (180)
T ss_dssp ------------CCGGGCSEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred H-------HHHHHHccCCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 2 245567899999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+... . ....|+++++||.| +... .....++.++++...+.+++
T Consensus 102 ---~~~~~~~i~~~-----------------------~-~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 151 (180)
T 2g6b_A 102 ---IQAWLTEIHEY-----------------------A-QHDVALMLLGNKVD--SAHE-RVVKREDGEKLAKEYGLPFM 151 (180)
T ss_dssp ---HHHHHHHHHHH-----------------------S-CTTCEEEEEEECCS--TTSC-CCSCHHHHHHHHHHHTCCEE
T ss_pred ---HHHHHHHHHHh-----------------------C-CCCCcEEEEEECcc--cCcc-cccCHHHHHHHHHHcCCeEE
Confidence 00011111000 0 14679999999995 4332 23345667777777788999
Q ss_pred EechhhhHhhc
Q 014539 295 TISAQVEAELT 305 (423)
Q Consensus 295 ~~Sa~~e~~i~ 305 (423)
++||+.+.++.
T Consensus 152 ~~Sa~~~~gi~ 162 (180)
T 2g6b_A 152 ETSAKTGLNVD 162 (180)
T ss_dssp ECCTTTCTTHH
T ss_pred EEeCCCCCCHH
Confidence 99999876653
No 22
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.66 E-value=4e-16 Score=150.68 Aligned_cols=87 Identities=28% Similarity=0.484 Sum_probs=66.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||||+|+| ....++++|++|+++..+.+.. + ..+.+|||||+....
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g-~~~~v~~~pg~tv~~~~~~~~~-~-----------------~~l~l~DtpG~~~~~ 63 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITG-HNQRVGNWPGVTVERKSGLVKK-N-----------------KDLEIQDLPGIYSMS 63 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHC-CCCCCCSSSCCCCSCEEEECTT-C-----------------TTEEEEECCCCSCSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCCcEEEEEEEEec-C-----------------CeEEEEECCCcCccC
Confidence 47899999999999999999994 4567899999999998887754 3 459999999997543
Q ss_pred Cc--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQ--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. .+.+...++.. .++|++++|+|++
T Consensus 64 ~~~~~e~v~~~~~~~-~~~d~vi~V~D~t 91 (272)
T 3b1v_A 64 PYSPEAKVARDYLLS-QRADSILNVVDAT 91 (272)
T ss_dssp CSSHHHHHHHHHHHT-TCCSEEEEEEEGG
T ss_pred CCChHHHHHHHHHhc-CCCCEEEEEecCC
Confidence 21 22232333322 3699999999974
No 23
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.66 E-value=1.3e-15 Score=133.56 Aligned_cols=151 Identities=17% Similarity=0.190 Sum_probs=96.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++. .......|.++.+.....+.+++.. ..+.+|||||.....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~ 66 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVED-KFNPSFITTIGIDFKIKTVDINGKK---------------VKLQIWDTAGQERFR 66 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC-CCCC-------CCEEEEEEESSSCE---------------EEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCChhhh
Confidence 379999999999999999999944 4444556667766666666665532 469999999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++++|++++|+|+++... +. .
T Consensus 67 ~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 93 (170)
T 1g16_A 67 T-------ITTAYYRGAMGIILVYDITDERT-------------FT---------------N------------------ 93 (170)
T ss_dssp C-------CCHHHHTTEEEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred h-------hHHHHhccCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2 24556789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.+. .....|+++++||.| +.. .....++.++++++.+.++++
T Consensus 94 --~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~--~~~~~~~~~~~~~~~~~~~~~ 143 (170)
T 1g16_A 94 --IKQWFKTVNEH------------------------ANDEAQLLLVGNKSD--MET--RVVTADQGEALAKELGIPFIE 143 (170)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CTT--CCSCHHHHHHHHHHHTCCEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCcEEEEEECcc--CCc--CccCHHHHHHHHHHcCCeEEE
Confidence 00011111000 013679999999995 432 234566777777777889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 144 ~Sa~~~~gv~ 153 (170)
T 1g16_A 144 SSAKNDDNVN 153 (170)
T ss_dssp CBTTTTBSHH
T ss_pred EECCCCCCHH
Confidence 9999876653
No 24
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.66 E-value=2.1e-15 Score=135.92 Aligned_cols=153 Identities=15% Similarity=0.152 Sum_probs=104.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+ .........|++|.+.....+.+++.. ..+.||||||.....
T Consensus 16 ~~ki~v~G~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 79 (196)
T 3tkl_A 16 LFKLLLIGDSGVGKSCLLLRFA-DDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFR 79 (196)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-HSCCCSCCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGGGC
T ss_pred ceEEEEECcCCCCHHHHHHHHH-cCCCCCCCCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhhh
Confidence 4799999999999999999999 455555667788877777777766532 459999999974332
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
......++.+|++++|+|+++... ++ .
T Consensus 80 -------~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 106 (196)
T 3tkl_A 80 -------TITSSYYRGAHGIIVVYDVTDQES-------------FN---------------N------------------ 106 (196)
T ss_dssp -------TTHHHHHTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred -------hhHHHHHhhCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 245567889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +... ......+.++++...+.++++
T Consensus 107 --~~~~~~~i~~~------------------------~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 157 (196)
T 3tkl_A 107 --VKQWLQEIDRY------------------------ASENVNKLLVGNKCD--LTTK-KVVDYTTAKEFADSLGIPFLE 157 (196)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCCEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCcEEE
Confidence 00001111000 013679999999995 4432 234456677788888899999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 158 ~Sa~~g~gv~~ 168 (196)
T 3tkl_A 158 TSAKNATNVEQ 168 (196)
T ss_dssp ECTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99998877643
No 25
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.65 E-value=6.1e-17 Score=167.47 Aligned_cols=97 Identities=27% Similarity=0.376 Sum_probs=67.3
Q ss_pred hccccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 50 ASKISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 50 ~~~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
++..+.+++|+|+|.||||||||+|+|++...+.+++.|+||++.....+.+.+ ..+.|||||
T Consensus 218 ~~~~r~~~kV~ivG~~nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g-----------------~~v~liDT~ 280 (462)
T 3geh_A 218 GELLRTGLKVAIVGRPNVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG-----------------IPVQVLDTA 280 (462)
T ss_dssp HHHHHHCEEEEEEECTTSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT-----------------EEEEECC--
T ss_pred hhhhcCCCEEEEEcCCCCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC-----------------EEEEEEECC
Confidence 344456789999999999999999999987778899999999998877777765 469999999
Q ss_pred CCcCCCCcccchh-hHHhhhhhhcceEEEEEeccC
Q 014539 130 GLVKGASQGEGLG-NKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 130 Gl~~~~~~~~~l~-~~~l~~ir~aD~il~Vvd~~~ 163 (423)
|+.......+.++ ...+..++.||++++|+|+++
T Consensus 281 G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~ 315 (462)
T 3geh_A 281 GIRETSDQVEKIGVERSRQAANTADLVLLTIDAAT 315 (462)
T ss_dssp ------------------CCCCSCSEEEEEEETTT
T ss_pred ccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCC
Confidence 9966444333332 456778899999999999864
No 26
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.65 E-value=5e-16 Score=148.68 Aligned_cols=88 Identities=26% Similarity=0.484 Sum_probs=68.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||||+|+| ....++++|++|.+...+.+...+ ..+.+|||||+....
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g-~~~~~~~~pg~tv~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~ 66 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG-TKQYVANWPGVTVEKKEGVFTYKG-----------------YTINLIDLPGTYSLG 66 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT-TCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSSCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHC-CCCcccCCCCceEEEEEEEEEECC-----------------eEEEEEECCCcCccC
Confidence 37899999999999999999994 456689999999999888887655 569999999997554
Q ss_pred Cc--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQ--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
+. .+.+...++.. ..+|++++|+|++
T Consensus 67 ~~~~~e~v~~~~~~~-~~~d~ii~V~D~t 94 (258)
T 3a1s_A 67 YSSIDEKIARDYLLK-GDADLVILVADSV 94 (258)
T ss_dssp SSSHHHHHHHHHHHH-SCCSEEEEEEETT
T ss_pred CCCHHHHHHHHHHhh-cCCCEEEEEeCCC
Confidence 32 22233333322 6899999999975
No 27
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.65 E-value=2.7e-15 Score=131.70 Aligned_cols=151 Identities=17% Similarity=0.154 Sum_probs=95.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|..+.+.....+.+.+.. ..+.+|||||.....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 69 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN-KFNDKHITTLGASFLTKKLNIGGKR---------------VNLAIWDTAGQERFH 69 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC-CCCSSCCCCCSCEEEEEEEESSSCE---------------EEEEEEECCCC----
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC-CCCcCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCcHhhh
Confidence 479999999999999999999954 3333445555555555556665432 468999999974332
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++++|++++|+|+++... +. .
T Consensus 70 ~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 96 (170)
T 1z08_A 70 A-------LGPIYYRDSNGAILVYDITDEDS-------------FQ---------------K------------------ 96 (170)
T ss_dssp ----------CCSSTTCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred h-------hHHHHhccCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 2 23445789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....++.+.+.. ....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 97 --~~~~~~~~~~~~------------------------~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 147 (170)
T 1z08_A 97 --VKNWVKELRKML------------------------GNEICLCIVGNKID--LEKE-RHVSIQEAESYAESVGAKHYH 147 (170)
T ss_dssp --HHHHHHHHHHHH------------------------GGGSEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHhc------------------------CCCCeEEEEEECcc--cccc-cccCHHHHHHHHHHcCCeEEE
Confidence 000111111000 14679999999995 4332 233456778888888889999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+.+.++
T Consensus 148 ~Sa~~~~gi 156 (170)
T 1z08_A 148 TSAKQNKGI 156 (170)
T ss_dssp EBTTTTBSH
T ss_pred ecCCCCCCH
Confidence 999987655
No 28
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.65 E-value=2.4e-16 Score=161.87 Aligned_cols=90 Identities=24% Similarity=0.277 Sum_probs=58.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+|||.||||||||||+|+|...+.+++.|++|++...+.+.+.+ ..+.+|||||+.....
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~~~ 66 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGDE 66 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC-----------CEEEECTTCS-----------------SCCEEEC---------
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEECC-----------------ceEEEEECCCCCCcch
Confidence 68999999999999999999988778899999999999988887765 4599999999964332
Q ss_pred c-ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 Q-GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~-~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .+.+..++..++++||++++|+|+++
T Consensus 67 ~~~~~~~~~~~~~~~~ad~il~vvD~~~ 94 (436)
T 2hjg_A 67 PFLAQIRQQAEIAMDEADVIIFMVNGRE 94 (436)
T ss_dssp CHHHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred hHHHHHHHHHHHHHHhCCEEEEEEeCCC
Confidence 1 22444566788999999999999853
No 29
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.65 E-value=1.7e-15 Score=131.77 Aligned_cols=90 Identities=29% Similarity=0.394 Sum_probs=63.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++.....+++.|++|.+.....+...+ ..+.+|||||......
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~~ 64 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDR-----------------GRFLLVDTGGLWSGDK 64 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC-----------CCEEEEEEETT-----------------EEEEEEECGGGCSSSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeCC-----------------ceEEEEECCCCCCccc
Confidence 58999999999999999999976666678889999998888877765 4689999999976443
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....+...+...++.+|++++|+|+++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (161)
T 2dyk_A 65 WEKKIQEKVDRALEDAEVVLFAVDGRA 91 (161)
T ss_dssp CCHHHHHHHHHHTTTCSEEEEEEESSS
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEECCC
Confidence 233344566778899999999999853
No 30
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.65 E-value=4.5e-15 Score=132.58 Aligned_cols=152 Identities=16% Similarity=0.182 Sum_probs=100.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+++.. ..+.+|||||.....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 66 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH--FVDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS 66 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS--CCCCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCC---C
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCCchheEEEEEEECCcE---------------EEEEEEECCCcHHHH
Confidence 4799999999999999999999554 24566677766666666555522 458899999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+.+... +. .
T Consensus 67 ~-------~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~------------------ 93 (189)
T 4dsu_A 67 A-------MRDQYMRTGEGFLCVFAINNTKS-------------FE---------------D------------------ 93 (189)
T ss_dssp T-------THHHHHHHCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2 34456788999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.. .......|+++++||.| +... ....+.+.+++...+.++++
T Consensus 94 --~~~~~~~~~~-----------------------~~~~~~~p~i~v~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~~ 144 (189)
T 4dsu_A 94 --IHHYREQIKR-----------------------VKDSEDVPMVLVGNKCD--LPSR--TVDTKQAQDLARSYGIPFIE 144 (189)
T ss_dssp --HHHHHHHHHH-----------------------HTTCSCCCEEEEEECTT--SSSC--SSCHHHHHHHHHHHTCCEEE
T ss_pred --HHHHHHHHHH-----------------------hcCCCCCcEEEEEECcc--Cccc--ccCHHHHHHHHHHcCCeEEE
Confidence 0001111111 11124689999999995 4332 44566777777777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 145 ~Sa~~g~gi~~ 155 (189)
T 4dsu_A 145 TSAKTRQGVDD 155 (189)
T ss_dssp CCTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99999877644
No 31
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.65 E-value=2.2e-15 Score=137.75 Aligned_cols=155 Identities=17% Similarity=0.190 Sum_probs=102.0
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|+++|.||||||||+|+|++ ........|.++.+.....+.+++.. ..+.||||||..
T Consensus 17 ~~~~~~i~v~G~~~~GKSsli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 80 (213)
T 3cph_A 17 YDSIMKILLIGDSGVGKSCLLVRFVE-DKFNPSFITTIGIDFKIKTVDINGKK---------------VKLQLWDTAGQE 80 (213)
T ss_dssp ---CEEEEEECSTTSSHHHHHHHHHH-CCCCCSSSCCCSCCEEEEEEEETTEE---------------EEEEEECCTTGG
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHh-CCCCcccCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcH
Confidence 34468999999999999999999994 44445566777777776667665532 469999999974
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
.... .....++.+|++++|+|+.+... +. .
T Consensus 81 ~~~~-------~~~~~~~~~d~ii~v~d~~~~~s-------------~~---------------~--------------- 110 (213)
T 3cph_A 81 RFRT-------ITTAYYRGAMGIILVYDVTDERT-------------FT---------------N--------------- 110 (213)
T ss_dssp GGTC-------CCHHHHTTCSEEEEEEETTCHHH-------------HH---------------T---------------
T ss_pred HHHH-------HHHHHhccCCEEEEEEECCCHHH-------------HH---------------H---------------
Confidence 3322 34566789999999999753210 00 0
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCc
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSG 292 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~ 292 (423)
....+..+... .....|+++++||.| +.. .....+.+.+++...+.+
T Consensus 111 -----~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~--~~~~~~~~~~~~~~~~~~ 157 (213)
T 3cph_A 111 -----IKQWFKTVNEH------------------------ANDEAQLLLVGNKSD--MET--RVVTADQGEALAKELGIP 157 (213)
T ss_dssp -----HHHHHHHHHHH------------------------TTTCSEEEEEEECTT--CSS--CCSCHHHHHHHHHHHTCC
T ss_pred -----HHHHHHHHHHh------------------------cCCCCCEEEEEECCC--Ccc--cccCHHHHHHHHHHcCCE
Confidence 00001111000 013679999999995 432 234456677777777889
Q ss_pred EEEechhhhHhhcC
Q 014539 293 RVTISAQVEAELTE 306 (423)
Q Consensus 293 ~v~~Sa~~e~~i~~ 306 (423)
++++||+.+.++.+
T Consensus 158 ~~~~Sa~~~~gi~~ 171 (213)
T 3cph_A 158 FIESSAKNDDNVNE 171 (213)
T ss_dssp EEECBTTTTBSSHH
T ss_pred EEEEeCCCCCCHHH
Confidence 99999999876643
No 32
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.64 E-value=3.5e-15 Score=131.87 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=63.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++ ........|.++.+.....+.+++.. ..+.+|||||....
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~-- 76 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMY-DSFDNTYQATIGIDFLSKTMYLEDRT---------------VRLQLWDTAGQERF-- 76 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-SCCCSSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGG--
T ss_pred eEEEEECCCCCCHHHHHHHHHc-CCCCCCCCCceeeEEEEEEEEECCeE---------------EEEEEEECCCcHHH--
Confidence 7999999999999999999994 44444556777777766666665532 46999999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.......++++|++++|+|++
T Consensus 77 -----~~~~~~~~~~~d~~i~v~d~~ 97 (179)
T 2y8e_A 77 -----RSLIPSYIRDSTVAVVVYDIT 97 (179)
T ss_dssp -----GGGSHHHHHTCSEEEEEEETT
T ss_pred -----HHHHHHHhcCCCEEEEEEECC
Confidence 223456688999999999975
No 33
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.64 E-value=2e-15 Score=134.54 Aligned_cols=153 Identities=18% Similarity=0.146 Sum_probs=99.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+++. ..+.++.|+.......+.+.+.. ..+.+|||||.....
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 68 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEGQ--FVDSYDPTIENTFTKLITVNGQE---------------YHLQLVDTAGQDEYS 68 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS--CCSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcCC--CCCCCCCCccccEEEEEEECCEE---------------EEEEEEeCCCchhhh
Confidence 4799999999999999999999544 34555556655555555555422 458999999986543
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++++|++++|+|+.+... ++ .
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~------------------ 95 (181)
T 3t5g_A 69 I-------FPQTYSIDINGYILVYSVTSIKS-------------FE---------------V------------------ 95 (181)
T ss_dssp C-------CCGGGTTTCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred H-------HHHHHHhcCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2 23355788999999999753210 10 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.+ .......|+++++||.| +.+. .....+++++++...+.++++
T Consensus 96 --~~~~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 147 (181)
T 3t5g_A 96 --IKVIHGKLLD-----------------------MVGKVQIPIMLVGNKKD--LHME-RVISYEEGKALAESWNAAFLE 147 (181)
T ss_dssp --HHHHHHHHHH-----------------------HC----CCEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHH-----------------------hcCCCCCCEEEEEECcc--chhc-ceecHHHHHHHHHHhCCcEEE
Confidence 0001111110 01124679999999995 4332 244567788888888999999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 148 ~Sa~~~~~v~~ 158 (181)
T 3t5g_A 148 SSAKENQTAVD 158 (181)
T ss_dssp CCTTSHHHHHH
T ss_pred EecCCCCCHHH
Confidence 99999877643
No 34
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.64 E-value=9.7e-16 Score=158.22 Aligned_cols=92 Identities=23% Similarity=0.223 Sum_probs=69.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++...+.++++|+||++.....+..++ ..+.||||||+.+.
T Consensus 194 ~~~ki~ivG~~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 256 (456)
T 4dcu_A 194 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKK 256 (456)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETT-----------------EEEEETTGGGTTTB
T ss_pred ccceeEEecCCCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECC-----------------ceEEEEECCCCCcC
Confidence 4589999999999999999999977778999999999999888887766 46999999998654
Q ss_pred CCc----ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQ----GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~----~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... ........+.+++.||++++|+|+++
T Consensus 257 ~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~ 289 (456)
T 4dcu_A 257 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 289 (456)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred cccchHHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 322 11222345678899999999999864
No 35
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.64 E-value=2.4e-15 Score=133.25 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=101.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++ ........|++|.+.....+.+.+.. ..+.+|||||....
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 71 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFAD-NTFSGSYITTIGVDFKIRTVEINGEK---------------VKLQIWDTAGQERF 71 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCS-CC---CCTTTBSEEEEEEEEEETTEE---------------EEEEEEEETTGGGC
T ss_pred cceEEEEECCCCCCHHHHHHHHhc-CCCCCccCCCceeEEEEEEEEECCEE---------------EEEEEEcCCCchhh
Confidence 348999999999999999999994 44446667888877777777766532 46999999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. .....++.+|++++|+|+++... +. .
T Consensus 72 ~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~----------------- 99 (181)
T 3tw8_B 72 RT-------ITSTYYRGTHGVIVVYDVTSAES-------------FV---------------N----------------- 99 (181)
T ss_dssp SS-------CCGGGGTTCSEEEEEEETTCHHH-------------HH---------------H-----------------
T ss_pred hh-------hHHHHhccCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 32 33456789999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+.. .....|+++++||.| .... ......+...++...+.+++
T Consensus 100 ---~~~~~~~~~~-------------------------~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 148 (181)
T 3tw8_B 100 ---VKRWLHEINQ-------------------------NCDDVCRILVGNKND--DPER-KVVETEDAYKFAGQMGIQLF 148 (181)
T ss_dssp ---HHHHHHHHHH-------------------------HCTTSEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCCEE
T ss_pred ---HHHHHHHHHH-------------------------hCCCCCEEEEEECCC--Cchh-cccCHHHHHHHHHHcCCeEE
Confidence 0001111100 013579999999995 3332 22344666777777788999
Q ss_pred EechhhhHhhcC
Q 014539 295 TISAQVEAELTE 306 (423)
Q Consensus 295 ~~Sa~~e~~i~~ 306 (423)
++||+.+.++.+
T Consensus 149 ~~Sa~~~~gi~~ 160 (181)
T 3tw8_B 149 ETSAKENVNVEE 160 (181)
T ss_dssp ECBTTTTBSHHH
T ss_pred EEECCCCCCHHH
Confidence 999999877643
No 36
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.63 E-value=5.4e-15 Score=134.92 Aligned_cols=153 Identities=16% Similarity=0.147 Sum_probs=102.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|..+.+.....+.+++.. ..+.||||||.....
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 71 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD-TYTNDYISTIGVDFKIKTVELDGKT---------------VKLQIWDTAGQERFR 71 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC-CCCTTCCCSSCCCEEEEEEEETTEE---------------EEEEEECCTTTTTTT
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC-CCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEeCCChHHHH
Confidence 479999999999999999999954 4444556777777666666665532 469999999975443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... +. .
T Consensus 72 ~-------~~~~~~~~~d~vilv~d~~~~~s-------------~~---------------~------------------ 98 (206)
T 2bcg_Y 72 T-------ITSSYYRGSHGIIIVYDVTDQES-------------FN---------------G------------------ 98 (206)
T ss_dssp C-------CCGGGGTTCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred H-------HHHHhccCCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 2 24456789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....++.+... .....|+++++||.| +... .....++..+++...+.++++
T Consensus 99 --~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 149 (206)
T 2bcg_Y 99 --VKMWLQEIDRY------------------------ATSTVLKLLVGNKCD--LKDK-RVVEYDVAKEFADANKMPFLE 149 (206)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCCEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCeEEE
Confidence 00011111000 014579999999995 4332 233456677777778889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 150 ~Sa~~g~gi~~ 160 (206)
T 2bcg_Y 150 TSALDSTNVED 160 (206)
T ss_dssp CCTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99998877643
No 37
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.63 E-value=2.2e-15 Score=143.12 Aligned_cols=91 Identities=16% Similarity=0.047 Sum_probs=64.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCC-CccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+|||.||||||||+|+|+|.....++..+ ++|+.+..+.+...+ .++.||||||+..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~-----------------~~i~liDTPG~~~ 82 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK-----------------CHVEVVDTPDIFS 82 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEETT-----------------EEEEEEECCSCSS
T ss_pred CceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC-----------------cEEEEEECCCCCC
Confidence 3589999999999999999999976655544433 488899888887765 5699999999975
Q ss_pred CCCcc-cchhhHHhhh----hhhcceEEEEEecc
Q 014539 134 GASQG-EGLGNKFLSH----IREVDSILQVVRCF 162 (423)
Q Consensus 134 ~~~~~-~~l~~~~l~~----ir~aD~il~Vvd~~ 162 (423)
..... +.+...+... .+.+|++|+|+|+.
T Consensus 83 ~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~ 116 (247)
T 3lxw_A 83 SQVSKTDPGCEERGHCYLLSAPGPHALLLVTQLG 116 (247)
T ss_dssp TTHHHHSTTSHHHHHHHHHHTTCCSEEEEEEETT
T ss_pred CCCCcHHHHHHHHHHHHHhcCCCCCEEEEEEeCC
Confidence 44322 3333333333 38999999999974
No 38
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.63 E-value=5.2e-15 Score=129.57 Aligned_cols=151 Identities=19% Similarity=0.125 Sum_probs=82.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++......++.+++|... .+.+.+.. ..+.+|||||.....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~---------------~~~~i~D~~g~~~~~ 63 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDR---SIVVDGEE---------------ASLMVYDIWEQDGGR 63 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC----------CEEEE---EEEETTEE---------------EEEEEEECC------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCCCccccceEE---EEEECCEE---------------EEEEEEECCCCccch
Confidence 379999999999999999999976666666677776542 23333322 468999999985433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... ++.+ ..
T Consensus 64 ~-------~~~~~~~~~~~~i~v~d~~~~~s-------------~~~~------------~~------------------ 93 (166)
T 3q72_A 64 W-------LPGHCMAMGDAYVIVYSVTDKGS-------------FEKA------------SE------------------ 93 (166)
T ss_dssp ----------------CCEEEEEEETTCHHH-------------HHHH------------HH------------------
T ss_pred h-------hhhhhhhhCCEEEEEEECCCHHH-------------HHHH------------HH------------------
Confidence 2 33455789999999999753210 0000 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
.+..+. . .......|+++++||.| +... .....++.++++...+.++++
T Consensus 94 -----~~~~~~---~--------------------~~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 142 (166)
T 3q72_A 94 -----LRVQLR---R--------------------ARQTDDVPIILVGNKSD--LVRS-REVSVDEGRACAVVFDCKFIE 142 (166)
T ss_dssp -----HHHHHH---H--------------------CC---CCCEEEEEECTT--CCSS-CCSCHHHHHHHHHHTTCEEEE
T ss_pred -----HHHHHH---H--------------------hcCCCCCCEEEEEeccc--cccc-cccCHHHHHHHHHHhCCcEEE
Confidence 001000 0 00124679999999995 4332 234456667777778889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 143 ~Sa~~~~gi~ 152 (166)
T 3q72_A 143 TSAALHHNVQ 152 (166)
T ss_dssp CBGGGTBSHH
T ss_pred eccCCCCCHH
Confidence 9999876653
No 39
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.63 E-value=2.5e-15 Score=133.09 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=62.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++.. ......|.++.+.....+.+++.. ...+.+|||||.....
T Consensus 6 ~~ki~v~G~~~~GKssl~~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~--------------~~~~~~~Dt~G~~~~~ 70 (178)
T 2hxs_A 6 QLKIVVLGDGASGKTSLTTCFAQET-FGKQYKQTIGLDFFLRRITLPGNL--------------NVTLQIWDIGGQTIGG 70 (178)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHGGG-TTHHHHHTTTSSEEEEEEEETTTE--------------EEEEEEEECTTCCTTC
T ss_pred eEEEEEECcCCCCHHHHHHHHHhCc-CCCCCCCceeEEEEEEEEEeCCCC--------------EEEEEEEECCCCcccc
Confidence 4799999999999999999999543 222333555566666667665421 1469999999975443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 71 ~-------~~~~~~~~~d~~i~v~d~~~ 91 (178)
T 2hxs_A 71 K-------MLDKYIYGAQGVLLVYDITN 91 (178)
T ss_dssp T-------THHHHHTTCSEEEEEEETTC
T ss_pred c-------hhhHHHhhCCEEEEEEECCC
Confidence 2 34566889999999999753
No 40
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.63 E-value=2.8e-15 Score=130.77 Aligned_cols=152 Identities=20% Similarity=0.167 Sum_probs=97.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++... ...++.|+.......+.+.+.. ..+.+|||||....
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~- 65 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY- 65 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC--CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---C-
T ss_pred eEEEEEECCCCCCHHHHHHHHHhCcc--CCCCCCCcceEEEEEEEECCEE---------------EEEEEEECCCcchh-
Confidence 37999999999999999999995542 3445555555554445554422 46999999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......++.+|++++|+|+++... +. .
T Consensus 66 ------~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 93 (168)
T 1u8z_A 66 ------AAIRDNYFRSGEGFLCVFSITEMES-------------FA---------------A------------------ 93 (168)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred ------HHHHHHHhhcCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2345567889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.+.. .....|+++++||.| ..+. .....+++.+++...+.++++
T Consensus 94 --~~~~~~~i~~~~-----------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1u8z_A 94 --TADFREQILRVK-----------------------EDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRADQWNVNYVE 145 (168)
T ss_dssp --HHHHHHHHHHHH-----------------------CCTTSCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHHhc-----------------------CCCCCcEEEEEECcc--cccc-CccCHHHHHHHHHHcCCeEEE
Confidence 001111111111 124689999999995 4332 234466777777777889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 146 ~Sa~~~~gi~ 155 (168)
T 1u8z_A 146 TSAKTRANVD 155 (168)
T ss_dssp CCTTTCTTHH
T ss_pred eCCCCCCCHH
Confidence 9999876653
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.63 E-value=1.1e-14 Score=129.01 Aligned_cols=152 Identities=16% Similarity=0.159 Sum_probs=99.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ...+++.|+.......+.+++.. ..+.+|||||.....
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~~ 71 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQSY--FVSDYDPTIEDSYTKICSVDGIP---------------ARLDILDTAGQEEFG 71 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS--CCSSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTTTS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc--CccccCCCcCceEEEEEEECCEE---------------EEEEEEECCCchhhH
Confidence 4799999999999999999999553 34556666666555555555422 468999999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... +. .
T Consensus 72 ~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 98 (181)
T 2fn4_A 72 A-------MREQYMRAGHGFLLVFAINDRQS-------------FN---------------E------------------ 98 (181)
T ss_dssp C-------CHHHHHHHCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred H-------HHHHHHhhCCEEEEEEeCCCHHH-------------HH---------------H------------------
Confidence 2 33456788999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.... .....|+++++||.| +... .....++...++...+.++++
T Consensus 99 --~~~~~~~~~~~~-----------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 150 (181)
T 2fn4_A 99 --VGKLFTQILRVK-----------------------DRDDFPVVLVGNKAD--LESQ-RQVPRSEASAFGASHHVAYFE 150 (181)
T ss_dssp --HHHHHHHHHHHH-----------------------TSSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHhc-----------------------CCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCeEEE
Confidence 001111111100 124679999999995 3322 133456677777777889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 151 ~Sa~~~~gv~ 160 (181)
T 2fn4_A 151 ASAKLRLNVD 160 (181)
T ss_dssp CBTTTTBSHH
T ss_pred ecCCCCCCHH
Confidence 9999876663
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.63 E-value=5.8e-15 Score=134.51 Aligned_cols=156 Identities=20% Similarity=0.163 Sum_probs=101.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|++||.||||||||+|+|++. .......|++|.+.....+.+.+.. .++.+|||||...
T Consensus 21 ~~~~ki~vvG~~~vGKSsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~Dt~g~~~ 84 (195)
T 3cbq_A 21 DGIFKVMLVGESGVGKSTLAGTFGGL-QGDSAHEPENPEDTYERRIMVDKEE---------------VTLVVYDIWEQGD 84 (195)
T ss_dssp -CEEEEEEECSTTSSHHHHHHHTCCE-ECCGGGTTTSCTTEEEEEEEETTEE---------------EEEEEECCCCCSG
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHhc-cCCccCCCCcccceEEEEEEECCEE---------------EEEEEEecCCCcc
Confidence 34589999999999999999999843 3334567888888777777666533 4689999999843
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
.. . ......++.||++++|+|+++... +. ...
T Consensus 85 ~~----~--~~~~~~~~~~d~~ilv~d~~~~~s-------------~~---------------~~~-------------- 116 (195)
T 3cbq_A 85 AG----G--WLRDHCLQTGDAFLIVFSVTDRRS-------------FS---------------KVP-------------- 116 (195)
T ss_dssp GG----H--HHHHHHHHHCSEEEEEEETTCHHH-------------HH---------------THH--------------
T ss_pred ch----h--hhHHHhhccCCEEEEEEECCCHHH-------------HH---------------HHH--------------
Confidence 11 0 122345788999999999753211 00 000
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
..+..+.. .......|+++++||.| +... .....++.++++...+.++
T Consensus 117 ------~~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~a~~~~~~~ 164 (195)
T 3cbq_A 117 ------ETLLRLRA-----------------------GRPHHDLPVILVGNKSD--LARS-REVSLEEGRHLAGTLSCKH 164 (195)
T ss_dssp ------HHHHHHHH-----------------------HSTTSCCCEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCEE
T ss_pred ------HHHHHHHH-----------------------hcCCCCCCEEEEeechh--cccc-CCcCHHHHHHHHHHhCCEE
Confidence 00111100 00014679999999994 4432 2344667778887778899
Q ss_pred EEechhhhHhhc
Q 014539 294 VTISAQVEAELT 305 (423)
Q Consensus 294 v~~Sa~~e~~i~ 305 (423)
+++||+.+.++.
T Consensus 165 ~e~Sa~~~~~v~ 176 (195)
T 3cbq_A 165 IETSAALHHNTR 176 (195)
T ss_dssp EEEBTTTTBSHH
T ss_pred EEEcCCCCCCHH
Confidence 999999876653
No 43
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.63 E-value=1.8e-15 Score=139.63 Aligned_cols=93 Identities=22% Similarity=0.215 Sum_probs=67.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+++|.+|||||||+|+|++.. .+.+++.|++|.+.....+...+ ...+.||||||+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~l~DtpG~~~ 91 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAA----------------EPVAHLVDLPGYGY 91 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTT----------------SCSEEEEECCCCCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCC----------------CCcEEEEcCCCCCc
Confidence 35899999999999999999999765 46888999999987766654211 14599999999864
Q ss_pred CCCcc------cchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQG------EGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~------~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..... ..+...++.....+|++++|+|+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~ 127 (223)
T 4dhe_A 92 AEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARR 127 (223)
T ss_dssp SCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTS
T ss_pred ccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCC
Confidence 42211 1122344444555899999999853
No 44
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.63 E-value=4.6e-15 Score=130.28 Aligned_cols=153 Identities=19% Similarity=0.139 Sum_probs=91.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|++.. ......+.+|.+.....+.+++.. .++.+|||||......
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~D~~g~~~~~~ 66 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQ-GDHAHEMENSEDTYERRIMVDKEE---------------VTLIVYDIWEQGDAGG 66 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC-------------CEEEEEEEETTEE---------------EEEEEECCCCC-----
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc-CcccccCCCcCCeeeEEEEECCeE---------------EEEEEEECCCccccch
Confidence 689999999999999999999433 333444556667777766665533 4689999999854322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
......++.+|++++|+|+++... ++ .
T Consensus 67 ------~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------- 93 (169)
T 3q85_A 67 ------WLQDHCLQTGDAFLIVFSVTDRRS-------------FS---------------K------------------- 93 (169)
T ss_dssp ---------CHHHHHCSEEEEEEETTCHHH-------------HH---------------T-------------------
T ss_pred ------hhhhhhhccCCEEEEEEECCChHH-------------HH---------------H-------------------
Confidence 012234678999999999753211 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
....+..+.. .......|+++++||.| +.+. .....++..+++...+.+++++
T Consensus 94 -~~~~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~~ 146 (169)
T 3q85_A 94 -VPETLLRLRA-----------------------GRPHHDLPVILVGNKSD--LARS-REVSLEEGRHLAGTLSCKHIET 146 (169)
T ss_dssp -HHHHHHHHHH-----------------------HSTTSCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEEEEC
T ss_pred -HHHHHHHHHh-----------------------cccCCCCCEEEEeeCcc--hhhc-ccCCHHHHHHHHHHcCCcEEEe
Confidence 0000011100 00013689999999995 4322 2445677778888888999999
Q ss_pred chhhhHhhc
Q 014539 297 SAQVEAELT 305 (423)
Q Consensus 297 Sa~~e~~i~ 305 (423)
||+.+.++.
T Consensus 147 Sa~~~~~v~ 155 (169)
T 3q85_A 147 SAALHHNTR 155 (169)
T ss_dssp BTTTTBSHH
T ss_pred cCccCCCHH
Confidence 999876653
No 45
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.63 E-value=1.1e-15 Score=136.39 Aligned_cols=153 Identities=14% Similarity=0.140 Sum_probs=79.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+ .........|.++.+.....+.+++.. ..+.||||||.....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~-~~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 71 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFS-EDAFNSTFISTIGIDFKIRTIELDGKR---------------IKLQIWDTAGQERFR 71 (183)
T ss_dssp EEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEE---------------EEEEEEEC-------
T ss_pred ceEEEEECCCCCCHHHHHHHHH-hCCCCCCCCCcccceeEEEEEEECCEE---------------EEEEEEcCCCChhhh
Confidence 4799999999999999999999 444444455666666665566655422 469999999975432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++++|++++|+|+++... ++ .
T Consensus 72 ~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 98 (183)
T 2fu5_C 72 T-------ITTAYYRGAMGIMLVYDITNEKS-------------FD---------------N------------------ 98 (183)
T ss_dssp ---------CCTTTTTCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred h-------hHHHHHhcCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 2 23456789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 99 --~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 149 (183)
T 2fu5_C 99 --IRNWIRNIEEH------------------------ASADVEKMILGNKCD--VNDK-RQVSKERGEKLALDYGIKFME 149 (183)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEEC----CCSC-CCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECcc--CCcc-CcCCHHHHHHHHHHcCCeEEE
Confidence 00011111000 013579999999995 4332 233466778888778889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 150 ~Sa~~~~~i~~ 160 (183)
T 2fu5_C 150 TSAKANINVEN 160 (183)
T ss_dssp CCC---CCHHH
T ss_pred EeCCCCCCHHH
Confidence 99998876643
No 46
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.63 E-value=8.1e-15 Score=130.15 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=96.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++... .....|..+.+.....+.+.+.. ..+.+|||||....
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~- 74 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKDQF-VEFQESTIGAAFFSQTLAVNDAT---------------VKFEIWDTAGQERY- 74 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCC-TTTSCCCSCCSEEEEEEEETTEE---------------EEEEEEECCCSGGG-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCC-CCcCCCCceeEEEEEEEEECCEE---------------EEEEEEeCCCChhh-
Confidence 47999999999999999999995443 22333444444444445554422 46999999996432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......++.+|++++|+|+++... ++ .
T Consensus 75 ------~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 102 (181)
T 2efe_B 75 ------HSLAPMYYRGAAAAIIVFDVTNQAS-------------FE---------------R------------------ 102 (181)
T ss_dssp ------GGGTHHHHTTCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred ------hhhhHHHhccCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2234566889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... . ....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 103 --~~~~~~~~~~~---~---------------------~~~~p~i~v~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 153 (181)
T 2efe_B 103 --AKKWVQELQAQ---G---------------------NPNMVMALAGNKSD--LLDA-RKVTAEDAQTYAQENGLFFME 153 (181)
T ss_dssp --HHHHHHHHHHH---S---------------------CTTCEEEEEEECTT--CTTT-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHh---c---------------------CCCCcEEEEEECCc--cccc-ccCCHHHHHHHHHHcCCEEEE
Confidence 00111111100 0 13678999999995 4332 233567788888888889999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+.+.++
T Consensus 154 ~Sa~~g~gi 162 (181)
T 2efe_B 154 TSAKTATNV 162 (181)
T ss_dssp CCSSSCTTH
T ss_pred EECCCCCCH
Confidence 999886554
No 47
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.63 E-value=1.3e-14 Score=128.37 Aligned_cols=155 Identities=15% Similarity=0.103 Sum_probs=97.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++. .......|..+.+.....+.+++.. ..+.+|||||...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~-- 68 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN-KFDTQLFHTIGVEFLNKDLEVDGHF---------------VTMQIWDTAGQER-- 68 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS-CCCC----CCSEEEEEEEEEETTEE---------------EEEEEEECCCCGG--
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCceeeeEEEEEEEECCEE---------------EEEEEEeCCCchh--
Confidence 479999999999999999999944 3444445655555555556555422 4699999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+.......++.+|++++|+|+.+... +. .
T Consensus 69 -----~~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~------------------ 97 (177)
T 1wms_A 69 -----FRSLRTPFYRGSDCCLLTFSVDDSQS-------------FQ---------------N------------------ 97 (177)
T ss_dssp -----GHHHHGGGGTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred -----hhhhHHHHHhcCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 33345677889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHh-hcCCcEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS-DLQSGRV 294 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~-~~~~~~v 294 (423)
....++.+....... .....|+++++||.| +.. .....+++.+++. ..+.+++
T Consensus 98 --~~~~~~~~~~~~~~~--------------------~~~~~p~i~v~nK~D--l~~--~~~~~~~~~~~~~~~~~~~~~ 151 (177)
T 1wms_A 98 --LSNWKKEFIYYADVK--------------------EPESFPFVILGNKID--ISE--RQVSTEEAQAWCRDNGDYPYF 151 (177)
T ss_dssp --HHHHHHHHHHHHTCS--------------------CTTTSCEEEEEECTT--CSS--CSSCHHHHHHHHHHTTCCCEE
T ss_pred --HHHHHHHHHHHcccc--------------------ccCCCcEEEEEECCc--ccc--cccCHHHHHHHHHhcCCceEE
Confidence 001111111111100 025679999999995 432 2445677777776 4567899
Q ss_pred EechhhhHhhc
Q 014539 295 TISAQVEAELT 305 (423)
Q Consensus 295 ~~Sa~~e~~i~ 305 (423)
++||+.+.++.
T Consensus 152 ~~Sa~~~~gi~ 162 (177)
T 1wms_A 152 ETSAKDATNVA 162 (177)
T ss_dssp ECCTTTCTTHH
T ss_pred EEeCCCCCCHH
Confidence 99999876663
No 48
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.63 E-value=8.8e-16 Score=157.67 Aligned_cols=92 Identities=24% Similarity=0.238 Sum_probs=65.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|+|.....++++|+||++.....+.+++ ..+.||||||+.+.
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~-----------------~~~~l~DT~G~~~~ 236 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQ-----------------QEFVIVDTAGMRKK 236 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC---------CCEEEEETT-----------------EEEEETTHHHHTCB
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECC-----------------eEEEEEECCCcCcC
Confidence 3479999999999999999999987777899999999999888887766 45999999999654
Q ss_pred CCcc---cch-hhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQG---EGL-GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~---~~l-~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.... +.+ ....+..++.||++++|+|+++
T Consensus 237 ~~~~~~~e~~~~~~~~~~~~~ad~~llv~D~~~ 269 (436)
T 2hjg_A 237 GKVYETTEKYSVLRALKAIDRSEVVAVVLDGEE 269 (436)
T ss_dssp TTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTT
T ss_pred ccccchHHHHHHHHHHHHHHhCCEEEEEEcCCc
Confidence 3321 111 1234568899999999999864
No 49
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.63 E-value=7.1e-15 Score=129.90 Aligned_cols=151 Identities=19% Similarity=0.131 Sum_probs=96.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++... .....|.++.+.....+.+++.. ..+.+|||||....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~- 77 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSGQK---------------IKLQIWDTAGQERF- 77 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCC-CSSCTTSCCCCEEEEEEEETTEE---------------EEEEEEECTTGGGT-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCC-CCCCCCccceEEEEEEEEECCeE---------------EEEEEEECCCChHh-
Confidence 48999999999999999999995443 22222333333334444444422 46999999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......++++|++++|+|+++... .+ .
T Consensus 78 ------~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 105 (179)
T 1z0f_A 78 ------RAVTRSYYRGAAGALMVYDITRRST-------------YN---------------H------------------ 105 (179)
T ss_dssp ------CHHHHHHHHTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred ------hhhHHHHhccCCEEEEEEeCcCHHH-------------HH---------------H------------------
Confidence 2356677899999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 106 --~~~~~~~~~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (179)
T 1z0f_A 106 --LSSWLTDARNL------------------------TNPNTVIILIGNKAD--LEAQ-RDVTYEEAKQFAEENGLLFLE 156 (179)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEEEE
Confidence 00001111000 014679999999995 4322 233466788888888899999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+.+.++
T Consensus 157 ~Sa~~~~gi 165 (179)
T 1z0f_A 157 ASAKTGENV 165 (179)
T ss_dssp CCTTTCTTH
T ss_pred EeCCCCCCH
Confidence 999987665
No 50
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.62 E-value=1.2e-14 Score=129.40 Aligned_cols=153 Identities=20% Similarity=0.168 Sum_probs=100.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+.+.. ..+.||||||....
T Consensus 18 ~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~- 79 (187)
T 2a9k_A 18 LHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY- 79 (187)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC--CCCSCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC-
T ss_pred ceEEEEECCCCCCHHHHHHHHhhCC--CCCcCCCccceEEEEEEEECCEE---------------EEEEEEECCCCccc-
Confidence 4799999999999999999999554 23455666655555555554422 46899999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.......++.+|++++|+|+++.. .+ +.
T Consensus 80 ------~~~~~~~~~~~d~~i~v~d~~~~~----------------s~------------~~------------------ 107 (187)
T 2a9k_A 80 ------AAIRDNYFRSGEGFLCVFSITEME----------------SF------------AA------------------ 107 (187)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETTCHH----------------HH------------HH------------------
T ss_pred ------HHHHHHHhccCCEEEEEEECcCHH----------------HH------------HH------------------
Confidence 234556788999999999975311 00 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.... .....|+++++||.| +... .....+++++++...+.++++
T Consensus 108 --~~~~~~~i~~~~-----------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 159 (187)
T 2a9k_A 108 --TADFREQILRVK-----------------------EDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRAEQWNVNYVE 159 (187)
T ss_dssp --HHHHHHHHHHHH-----------------------CCTTCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHhc-----------------------CCCCCCEEEEEECcc--cccc-CccCHHHHHHHHHHcCCeEEE
Confidence 001111111111 124679999999995 4332 234467778888888889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 160 ~Sa~~~~gi~~ 170 (187)
T 2a9k_A 160 TSAKTRANVDK 170 (187)
T ss_dssp CCTTTCTTHHH
T ss_pred eCCCCCCCHHH
Confidence 99998776643
No 51
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.62 E-value=3.3e-15 Score=134.55 Aligned_cols=152 Identities=18% Similarity=0.154 Sum_probs=95.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+...+.. ..+.+|||||.....
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 85 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDS-FTPAFVSTVGIDFKVKTVYRHDKR---------------IKLQIWDTAGQERYR 85 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCCSCCCCCCCEEEEEEEEETTEE---------------EEEEEEECCSCCSSC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCC-CCCCcCCceeEEEEEEEEEECCeE---------------EEEEEEeCCCcHHHh
Confidence 3799999999999999999999544 322333433333333444443322 469999999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... ++ .
T Consensus 86 ~-------~~~~~~~~~d~ii~v~d~~~~~s-------------~~---------------~------------------ 112 (189)
T 2gf9_A 86 T-------ITTAYYRGAMGFLLMYDIANQES-------------FA---------------A------------------ 112 (189)
T ss_dssp C-------SGGGGGTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred h-------hHHHhccCCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2 34566889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 113 --~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 163 (189)
T 2gf9_A 113 --VQDWATQIKTY------------------------SWDNAQVILVGNKCD--LEDE-RVVPAEDGRRLADDLGFEFFE 163 (189)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECcc--cccc-cCCCHHHHHHHHHHcCCeEEE
Confidence 00011111000 014679999999995 4332 233456777777777889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 164 ~Sa~~g~gi~ 173 (189)
T 2gf9_A 164 ASAKENINVK 173 (189)
T ss_dssp CBTTTTBSHH
T ss_pred EECCCCCCHH
Confidence 9999876663
No 52
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.62 E-value=1.3e-14 Score=126.65 Aligned_cols=83 Identities=17% Similarity=0.089 Sum_probs=57.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|+++.. ...++.|+.......+.+.+.. ..+.+|||||......
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~~~ 66 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDCQQ---------------CMLEILDTAGTEQFTA 66 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHCCC--CCSCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSCSSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCC--CCCCCCCccceEEEEEEECCEE---------------EEEEEEECCChHHHHH
Confidence 7899999999999999999995432 2233334433333344444322 4689999999854432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.....++++|++++|+|+.+
T Consensus 67 -------~~~~~~~~~d~~i~v~d~~~ 86 (167)
T 1c1y_A 67 -------MRDLYMKNGQGFALVYSITA 86 (167)
T ss_dssp -------HHHHHHHHCSEEEEEEETTC
T ss_pred -------HHHHHhccCCEEEEEEECCC
Confidence 34566788999999999753
No 53
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.62 E-value=9.7e-15 Score=132.55 Aligned_cols=154 Identities=19% Similarity=0.165 Sum_probs=101.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+++.. ..+.||||||....
T Consensus 13 ~~~ki~v~G~~~~GKSsli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 75 (206)
T 2bov_A 13 ALHKVIMVGSGGVGKSALTLQFMYDE--FVEDYEPTKADSYRKKVVLDGEE---------------VQIDILDTAGQEDY 75 (206)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSC--CCTTCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCccceEEEEEEEECCEE---------------EEEEEEcCCChhhh
Confidence 34899999999999999999999554 24556666666655555555422 46999999997432
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.......++.+|++++|+|+++... +. .
T Consensus 76 -------~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~----------------- 103 (206)
T 2bov_A 76 -------AAIRDNYFRSGEGFLCVFSITEMES-------------FA---------------A----------------- 103 (206)
T ss_dssp -------HHHHHHHHHHCSEEEEEEETTCHHH-------------HH---------------H-----------------
T ss_pred -------HHHHHHHHhhCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 2345567889999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+... ......|+++++||.| +... .....+++.+++...+.+++
T Consensus 104 ---~~~~~~~i~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 154 (206)
T 2bov_A 104 ---TADFREQILRV-----------------------KEDENVPFLLVGNKSD--LEDK-RQVSVEEAKNRAEQWNVNYV 154 (206)
T ss_dssp ---HHHHHHHHHHH-----------------------TTCSCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEE
T ss_pred ---HHHHHHHHHHh-----------------------cCCCCCCEEEEEeccC--cccc-ccccHHHHHHHHHHhCCeEE
Confidence 00111111110 1124689999999995 4332 23446677788877788999
Q ss_pred EechhhhHhhcC
Q 014539 295 TISAQVEAELTE 306 (423)
Q Consensus 295 ~~Sa~~e~~i~~ 306 (423)
++||+.+.++.+
T Consensus 155 ~~Sa~~g~gi~~ 166 (206)
T 2bov_A 155 ETSAKTRANVDK 166 (206)
T ss_dssp EECTTTCTTHHH
T ss_pred EEeCCCCCCHHH
Confidence 999999877643
No 54
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.62 E-value=7.2e-15 Score=128.54 Aligned_cols=150 Identities=17% Similarity=0.119 Sum_probs=98.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~ 68 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG-IFTKDYKKTIGVDFLERQIQVNDED---------------VRLMLWDTAGQEEFD 68 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC-CCCCCSSCCCSSSEEEEEEEETTEE---------------EEEEEECCTTGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC-CCCCCCCCceEEEEEEEEEEECCEE---------------EEEEEEcCCCcHhHH
Confidence 479999999999999999999954 3333444555556656666555422 469999999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... ++ .
T Consensus 69 ~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 95 (168)
T 1z2a_A 69 A-------ITKAYYRGAQACVLVFSTTDRES-------------FE---------------A------------------ 95 (168)
T ss_dssp C-------CCHHHHTTCCEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred H-------HHHHHhcCCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 2 24456789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.. . ....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 96 --~~~~~~~i~~-----------------------~--~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 145 (168)
T 1z2a_A 96 --ISSWREKVVA-----------------------E--VGDIPTALVQNKID--LLDD-SCIKNEEAEGLAKRLKLRFYR 145 (168)
T ss_dssp --HHHHHHHHHH-----------------------H--HCSCCEEEEEECGG--GGGG-CSSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHH-----------------------h--CCCCCEEEEEECcc--cCcc-cccCHHHHHHHHHHcCCeEEE
Confidence 0000111100 0 14679999999995 4322 133456777777777889999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+.+.++
T Consensus 146 ~Sa~~~~~i 154 (168)
T 1z2a_A 146 TSVKEDLNV 154 (168)
T ss_dssp CBTTTTBSS
T ss_pred EecCCCCCH
Confidence 999987655
No 55
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.62 E-value=6.4e-15 Score=128.32 Aligned_cols=152 Identities=18% Similarity=0.153 Sum_probs=96.0
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|+++... ..++.++.+.....+.+++.. ..+.+|||||....
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~D~~G~~~~-- 64 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTGTFI--EKYDPTIEDFYRKEIEVDSSP---------------SVLEILDTAGTEQF-- 64 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCTTCC--
T ss_pred EEEEEECCCCCCHHHHHHHHHcCCCc--ccCCCCcceeEEEEEEECCEE---------------EEEEEEECCCchhh--
Confidence 79999999999999999999954432 233344444444445554422 45899999997432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
.......++.+|++++|+|+.+... ++ .
T Consensus 65 -----~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~---------------~------------------- 92 (167)
T 1kao_A 65 -----ASMRDLYIKNGQGFILVYSLVNQQS-------------FQ---------------D------------------- 92 (167)
T ss_dssp -----HHHHHHHHHHCSEEEEEEETTCHHH-------------HH---------------H-------------------
T ss_pred -----HHHHHHHhccCCEEEEEEeCCCHHH-------------HH---------------H-------------------
Confidence 2244566889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
....+..+.+. ......|+++++||.| .... ......+.++++...+.+++++
T Consensus 93 -~~~~~~~i~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~~ 145 (167)
T 1kao_A 93 -IKPMRDQIIRV-----------------------KRYEKVPVILVGNKVD--LESE-REVSSSEGRALAEEWGCPFMET 145 (167)
T ss_dssp -HHHHHHHHHHH-----------------------TTTSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTSCEEEE
T ss_pred -HHHHHHHHHHh-----------------------cCCCCCCEEEEEECCc--cccc-ccCCHHHHHHHHHHhCCCEEEe
Confidence 00011111110 1124689999999995 3322 2334556677777778899999
Q ss_pred chhhhHhhcC
Q 014539 297 SAQVEAELTE 306 (423)
Q Consensus 297 Sa~~e~~i~~ 306 (423)
||+.+.++.+
T Consensus 146 Sa~~~~gi~~ 155 (167)
T 1kao_A 146 SAKSKTMVDE 155 (167)
T ss_dssp CTTCHHHHHH
T ss_pred cCCCCcCHHH
Confidence 9999877643
No 56
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.62 E-value=6.7e-15 Score=135.08 Aligned_cols=153 Identities=13% Similarity=0.119 Sum_probs=100.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|..+.+.....+.+++.. .++.+|||||..
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~--- 86 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQG-LFPPGQGATIGVDFMIKTVEINGEK---------------VKLQIWDTAGQE--- 86 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS-SCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSG---
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC-CCCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCcH---
Confidence 479999999999999999999944 3444455666666656666665522 469999999973
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.+.......++.||++++|+|+++... ++ .
T Consensus 87 ----~~~~~~~~~~~~~d~~i~v~D~~~~~s-------------~~---------------~------------------ 116 (201)
T 2ew1_A 87 ----RFRSITQSYYRSANALILTYDITCEES-------------FR---------------C------------------ 116 (201)
T ss_dssp ----GGHHHHGGGSTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred ----HHHHHHHHHHhcCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 233456677899999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....++.+... .....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 117 --~~~~~~~i~~~------------------------~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 167 (201)
T 2ew1_A 117 --LPEWLREIEQY------------------------ASNKVITVLVGNKID--LAER-REVSQQRAEEFSEAQDMYYLE 167 (201)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECGG--GGGG-CSSCHHHHHHHHHHHTCCEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCEEEE
Confidence 00001111000 013578999999995 4322 133456677777777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 168 ~Sa~~g~gv~~ 178 (201)
T 2ew1_A 168 TSAKESDNVEK 178 (201)
T ss_dssp CCTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99999877743
No 57
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.62 E-value=2.1e-14 Score=129.10 Aligned_cols=165 Identities=18% Similarity=0.161 Sum_probs=99.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccch---------hhcccc------------
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLH---------VLSGLS------------ 113 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~---------~l~~~~------------ 113 (423)
..++|+++|.+|||||||+|+|++.. ......|.++.+.....+.+++.... .+..+.
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKDT-FHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN 84 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCc-CCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence 45899999999999999999999544 33333444444444455555432100 000000
Q ss_pred -ccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcH
Q 014539 114 -KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDL 192 (423)
Q Consensus 114 -~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~ 192 (423)
.+.......+.||||||...... .....++.+|++++|+|+++... +.
T Consensus 85 ~~~~~~~~~~~~i~Dt~G~~~~~~-------~~~~~~~~~d~~i~v~D~~~~~s-------------~~----------- 133 (208)
T 3clv_A 85 NYNENLCNIKFDIWDTAGQERYAS-------IVPLYYRGATCAIVVFDISNSNT-------------LD----------- 133 (208)
T ss_dssp CCCTTTCEEEEEEEECTTGGGCTT-------THHHHHTTCSEEEEEEETTCHHH-------------HH-----------
T ss_pred cccCccceeEEEEEECCCcHHHHH-------HHHHHhcCCCEEEEEEECCCHHH-------------HH-----------
Confidence 00011115799999999754332 45667889999999999753210 00
Q ss_pred HHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCC
Q 014539 193 DQIEKRMEKLKKGKAKDSQSKLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD 272 (423)
Q Consensus 193 ~~~e~~~~~~~~~~~~~~sa~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~ 272 (423)
. ....+..+ ......|+++++||.| ..+
T Consensus 134 ----~--------------------~~~~~~~i--------------------------~~~~~~piilv~NK~D--~~~ 161 (208)
T 3clv_A 134 ----R--------------------AKTWVNQL--------------------------KISSNYIIILVANKID--KNK 161 (208)
T ss_dssp ----H--------------------HHHHHHHH--------------------------HHHSCCEEEEEEECTT--CC-
T ss_pred ----H--------------------HHHHHHHH--------------------------HhhCCCcEEEEEECCC--ccc
Confidence 0 00000100 0113489999999996 222
Q ss_pred CCCCcchHHHHHHHhhcCCcEEEechhhhHhhc
Q 014539 273 PGSNPHVNEVMNLASDLQSGRVTISAQVEAELT 305 (423)
Q Consensus 273 ~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~ 305 (423)
.....+++++++.+.+.+++++||+.+.++.
T Consensus 162 --~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 192 (208)
T 3clv_A 162 --FQVDILEVQKYAQDNNLLFIQTSAKTGTNIK 192 (208)
T ss_dssp --CCSCHHHHHHHHHHTTCEEEEECTTTCTTHH
T ss_pred --ccCCHHHHHHHHHHcCCcEEEEecCCCCCHH
Confidence 2455778888888888999999999876663
No 58
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.62 E-value=5.6e-15 Score=129.31 Aligned_cols=84 Identities=19% Similarity=0.186 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~--- 64 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSND-FAENKEPTIGAAFLTQRVTINEHT---------------VKFEIWDTAGQER--- 64 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC-CCTTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGG---
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCChh---
Confidence 689999999999999999999543 333344555555555555554422 4699999999642
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++++|++++|+|+++
T Consensus 65 ----~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1ek0_A 65 ----FASLAPXYYRNAQAALVVYDVTK 87 (170)
T ss_dssp ----GGGGHHHHHTTCSEEEEEEETTC
T ss_pred ----hhhhhhhhhccCcEEEEEEecCC
Confidence 22345667899999999999753
No 59
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.62 E-value=2.7e-15 Score=134.02 Aligned_cols=153 Identities=18% Similarity=0.138 Sum_probs=101.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|.++.+.....+.+++.. ..+.+|||||...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-- 71 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK-KFKDDSNHTIGVEFGSKIINVGGKY---------------VKLQIWDTAGQER-- 71 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS-SCCTTCCCCSEEEEEEEEEEETTEE---------------EEEEEEEECCSGG--
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCCCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHH--
Confidence 479999999999999999999944 3444455666666666666655422 4699999999632
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
........++.+|++++|+|+++... +. .
T Consensus 72 -----~~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 100 (186)
T 2bme_A 72 -----FRSVTRSYYRGAAGALLVYDITSRET-------------YN---------------A------------------ 100 (186)
T ss_dssp -----GHHHHHTTSTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred -----HHHHHHHHHhcCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 33456677899999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+.. . .....|+++++||.| +... ......+..+++...+.++++
T Consensus 101 --~~~~~~~~~~-----------------------~-~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 151 (186)
T 2bme_A 101 --LTNWLTDARM-----------------------L-ASQNIVIILCGNKKD--LDAD-REVTFLEASRFAQENELMFLE 151 (186)
T ss_dssp --HHHHHHHHHH-----------------------H-SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHH-----------------------h-cCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEEEE
Confidence 0000111100 0 014679999999995 3322 233456777788788899999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 152 ~Sa~~~~gi~~ 162 (186)
T 2bme_A 152 TSALTGENVEE 162 (186)
T ss_dssp CCTTTCTTHHH
T ss_pred ecCCCCCCHHH
Confidence 99999877643
No 60
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.62 E-value=9e-15 Score=133.04 Aligned_cols=157 Identities=16% Similarity=0.091 Sum_probs=101.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+.+.. ..+.||||||....
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~ 70 (207)
T 1vg8_A 7 VLLKVIILGDSGVGKTSLMNQYVNKK-FSNQYKATIGADFLTKEVMVDDRL---------------VTMQIWDTAGQERF 70 (207)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSC-CCSSCCCCCSEEEEEEEEESSSCE---------------EEEEEEEECSSGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCcccceEEEEEEEECCEE---------------EEEEEEeCCCcHHH
Confidence 45899999999999999999999544 334445666666666666665422 46999999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. .....++.+|++++|+|+++... +. .
T Consensus 71 ~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~----------------- 98 (207)
T 1vg8_A 71 QS-------LGVAFYRGADCCVLVFDVTAPNT-------------FK---------------T----------------- 98 (207)
T ss_dssp SC-------SCCGGGTTCSEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred HH-------hHHHHHhCCcEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 22 23456789999999999753211 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHh-hcCCcE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLAS-DLQSGR 293 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~-~~~~~~ 293 (423)
....+..+...... ......|+++++||.| +.. .....+++.+++. ..+.++
T Consensus 99 ---~~~~~~~~~~~~~~--------------------~~~~~~piilv~nK~D--l~~--~~~~~~~~~~~~~~~~~~~~ 151 (207)
T 1vg8_A 99 ---LDSWRDEFLIQASP--------------------RDPENFPFVVLGNKID--LEN--RQVATKRAQAWCYSKNNIPY 151 (207)
T ss_dssp ---HHHHHHHHHHHHCC--------------------SSGGGSCEEEEEECTT--SSC--CCSCHHHHHHHHHHTTSCCE
T ss_pred ---HHHHHHHHHHhccc--------------------ccCCCCcEEEEEECCC--Ccc--cccCHHHHHHHHHhcCCceE
Confidence 00001111111100 0024679999999995 433 2345667777776 567889
Q ss_pred EEechhhhHhhcC
Q 014539 294 VTISAQVEAELTE 306 (423)
Q Consensus 294 v~~Sa~~e~~i~~ 306 (423)
+++||+.+.++.+
T Consensus 152 ~~~Sa~~g~gi~~ 164 (207)
T 1vg8_A 152 FETSAKEAINVEQ 164 (207)
T ss_dssp EECBTTTTBSHHH
T ss_pred EEEeCCCCCCHHH
Confidence 9999999877644
No 61
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.62 E-value=4.2e-15 Score=134.60 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=60.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++. .......|..+.+.....+.+.+.. ..+.+|||||...
T Consensus 25 ~~~ki~vvG~~~~GKSsLi~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~- 87 (192)
T 2il1_A 25 FKLQVIIIGSRGVGKTSLMERFTDD-TFCEACKSTVGVDFKIKTVELRGKK---------------IRLQIWDTAGQER- 87 (192)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHCC---------CCTTEEEEEEEEEETTEE---------------EEEEEEEECCSGG-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcC-CCCcCCCCccceeEEEEEEEECCeE---------------EEEEEEeCCCcHH-
Confidence 3479999999999999999999944 3334445666666666666655422 4699999999632
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.+|++++|+|+++
T Consensus 88 ------~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 88 ------FNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp ------GHHHHHHHHHHCSEEEEEEETTC
T ss_pred ------HHHHHHHHhcCCCEEEEEEECcC
Confidence 33455677899999999999753
No 62
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.62 E-value=3e-15 Score=135.15 Aligned_cols=153 Identities=19% Similarity=0.132 Sum_probs=97.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.+|||||.....
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 84 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKR-FQPVHDLTIGVEFGARMVNIDGKQ---------------IKLQIWDTAGQESFR 84 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC-CCC-----CCSSEEEEEEEETTEE---------------EEEEEECCTTGGGTS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 4799999999999999999999544 333344555666666666655422 469999999975433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++++|++++|+|+++... ++ .
T Consensus 85 ~-------~~~~~~~~~d~ii~v~d~~~~~s-------------~~---------------~------------------ 111 (191)
T 2a5j_A 85 S-------ITRSYYRGAAGALLVYDITRRET-------------FN---------------H------------------ 111 (191)
T ss_dssp C-------CCHHHHTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred h-------hHHHHhccCCEEEEEEECCCHHH-------------HH---------------H------------------
Confidence 2 23456789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +.+. .....+++++++...+.++++
T Consensus 112 --~~~~l~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 162 (191)
T 2a5j_A 112 --LTSWLEDARQH------------------------SSSNMVIMLIGNKSD--LESR-RDVKREEGEAFAREHGLIFME 162 (191)
T ss_dssp --HHHHHHHHHHH------------------------SCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECcc--cCCc-cccCHHHHHHHHHHcCCEEEE
Confidence 00011111000 014679999999995 4322 133456777788777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 163 ~Sa~~~~gi~~ 173 (191)
T 2a5j_A 163 TSAKTACNVEE 173 (191)
T ss_dssp ECTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99999877643
No 63
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.61 E-value=1.4e-14 Score=131.78 Aligned_cols=153 Identities=16% Similarity=0.161 Sum_probs=96.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+.+.. ..+.||||||...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-- 69 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDS-FTPAFVSTVGIDFKVKTIYRNDKR---------------IKLQIWDTAGLER-- 69 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCC-CCSCCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGG--
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC-CCCCcCCccceeEEEEEEEECCeE---------------EEEEEEECCCchh--
Confidence 3799999999999999999999543 222233333333333344443322 4699999999842
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+.......++.+|++++|+|+++... ++ .
T Consensus 70 -----~~~~~~~~~~~~d~ii~v~d~~~~~s-------------~~---------------~------------------ 98 (203)
T 1zbd_A 70 -----YRTITTAYYRGAMGFILMYDITNEES-------------FN---------------A------------------ 98 (203)
T ss_dssp -----GHHHHHTTGGGCSEEEEEEETTCHHH-------------HH---------------H------------------
T ss_pred -----hcchHHHhhcCCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 33456677899999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +... .....+++++++...+.++++
T Consensus 99 --~~~~~~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~~ 149 (203)
T 1zbd_A 99 --VQDWSTQIKTY------------------------SWDNAQVLLVGNKCD--MEDE-RVVSSERGRQLADHLGFEFFE 149 (203)
T ss_dssp --HHHHHHHHHHH------------------------SCSSCEEEEEEECTT--CTTS-CCSCHHHHHHHHHHHTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCCEEEEEECcc--cCcc-cccCHHHHHHHHHHCCCeEEE
Confidence 00011111000 014679999999995 4332 233456677777777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 150 ~Sa~~~~gi~~ 160 (203)
T 1zbd_A 150 ASAKDNINVKQ 160 (203)
T ss_dssp CBTTTTBSSHH
T ss_pred EECCCCCCHHH
Confidence 99999876643
No 64
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.61 E-value=7.3e-15 Score=132.23 Aligned_cols=149 Identities=17% Similarity=0.146 Sum_probs=97.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.||||||...
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~-- 81 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCAGR-FPDRTEATIGVDFRERAVDIDGER---------------IKIQLWDTAGQER-- 81 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS-CCSSCCCCCSCCEEEEEEEETTEE---------------EEEEEEECCCSHH--
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCchh--
Confidence 4799999999999999999999543 333445555656656666655422 4699999999632
Q ss_pred Ccccchh-hHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 136 SQGEGLG-NKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 136 ~~~~~l~-~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
+. ......++++|++++|+|+++... +. .
T Consensus 82 -----~~~~~~~~~~~~~d~iilv~D~~~~~s-------------~~---------------~----------------- 111 (189)
T 1z06_A 82 -----FRKSMVQHYYRNVHAVVFVYDMTNMAS-------------FH---------------S----------------- 111 (189)
T ss_dssp -----HHTTTHHHHHTTCCEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred -----hhhhhhHHHhcCCCEEEEEEECcCHHH-------------HH---------------H-----------------
Confidence 22 234566889999999999753211 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....++.+.+. ......|+++++||.| +.+. .....++.++++...+.+++
T Consensus 112 ---~~~~~~~i~~~-----------------------~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 162 (189)
T 1z06_A 112 ---LPAWIEECKQH-----------------------LLANDIPRILVGNKCD--LRSA-IQVPTDLAQKFADTHSMPLF 162 (189)
T ss_dssp ---HHHHHHHHHHH-----------------------CCCSCCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCCEE
T ss_pred ---HHHHHHHHHHh-----------------------cCCCCCCEEEEEECcc--cccc-ceeCHHHHHHHHHHcCCEEE
Confidence 00011111111 1124679999999995 3322 13345667778877888999
Q ss_pred Eechhhh
Q 014539 295 TISAQVE 301 (423)
Q Consensus 295 ~~Sa~~e 301 (423)
++||+.+
T Consensus 163 ~~Sa~~~ 169 (189)
T 1z06_A 163 ETSAKNP 169 (189)
T ss_dssp ECCSSSG
T ss_pred EEeCCcC
Confidence 9999987
No 65
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.61 E-value=1.3e-14 Score=129.81 Aligned_cols=162 Identities=14% Similarity=0.136 Sum_probs=97.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccce-EEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
.++|+++|.+|||||||+|+|++.. ......|..+.+.. ...+.+++... ....+ .....+.+|||||..
T Consensus 11 ~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~l~Dt~G~~-- 81 (195)
T 3bc1_A 11 LIKFLALGDSGVGKTSVLYQYTDGK-FNSKFITTVGIDFREKRVVYRANGPD----GAVGR--GQRIHLQLWDTAGLE-- 81 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC-CCCSCCCCCSEEEEEEEEEECTTSCC----CSSCC--CEEEEEEEEEECCSG--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-CCcCcccccceeeeeEEEEEecCCcc----ccccc--CcEEEEEEEeCCCcH--
Confidence 4799999999999999999999543 32223333333332 23344433100 00000 002469999999983
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.+.......++++|++++|+|+++... .. .
T Consensus 82 -----~~~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~----------------- 111 (195)
T 3bc1_A 82 -----RFRSLTTAFFRDAMGFLLLFDLTNEQS-------------FL---------------N----------------- 111 (195)
T ss_dssp -----GGHHHHHHTTTTCSEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred -----HHHHHHHHHHcCCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 233456778899999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....++.+.. .......|+++++||.| +... .....+++++++...+.+++
T Consensus 112 ---~~~~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 162 (195)
T 3bc1_A 112 ---VRNWISQLQM-----------------------HAYSENPDIVLCGNKSD--LEDQ-RAVKEEEARELAEKYGIPYF 162 (195)
T ss_dssp ---HHHHHHHHHH-----------------------HSSSSSCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCCEE
T ss_pred ---HHHHHHHHHH-----------------------hcCCCCCCEEEEEECcc--cccc-cccCHHHHHHHHHHcCCCEE
Confidence 0001111110 01114679999999995 4322 13345677777777788999
Q ss_pred EechhhhHhhc
Q 014539 295 TISAQVEAELT 305 (423)
Q Consensus 295 ~~Sa~~e~~i~ 305 (423)
++||+.+.++.
T Consensus 163 ~~Sa~~~~~v~ 173 (195)
T 3bc1_A 163 ETSAANGTNIS 173 (195)
T ss_dssp ECCTTTCTTHH
T ss_pred EEECCCCCCHH
Confidence 99999876663
No 66
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.61 E-value=1.4e-14 Score=130.59 Aligned_cols=153 Identities=16% Similarity=0.129 Sum_probs=96.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+|+|.+|||||||+|+|++.... ....|..+.+.....+.+.+.. .++.||||||....
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 87 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFS-HDSRTTIGVEFSTRTVMLGTAA---------------VKAQIWDTAGLERY 87 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCC-SSCCCCSSEEEEEEEEEETTEE---------------EEEEEEEESCCCTT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCC-CCCCCccceeEEEEEEEECCEE---------------EEEEEEeCCCchhh
Confidence 3489999999999999999999954432 2222332333333334443322 46899999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. .....++.+|++++|+|+++... +. .
T Consensus 88 ~~-------~~~~~~~~~d~vi~v~D~~~~~s-------------~~---------------~----------------- 115 (193)
T 2oil_A 88 RA-------ITSAYYRGAVGALLVFDLTKHQT-------------YA---------------V----------------- 115 (193)
T ss_dssp CT-------THHHHHTTCCEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred hh-------hhHHHhccCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 32 34566889999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+ ... .....|+++++||.| +... .....+++++++...+.+++
T Consensus 116 ---~~~~l~~i----~~~--------------------~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~~ 165 (193)
T 2oil_A 116 ---VERWLKEL----YDH--------------------AEATIVVMLVGNKSD--LSQA-REVPTEEARMFAENNGLLFL 165 (193)
T ss_dssp ---HHHHHHHH----HTT--------------------SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEE
T ss_pred ---HHHHHHHH----HHh--------------------cCCCCeEEEEEECCC--cccc-cccCHHHHHHHHHHcCCEEE
Confidence 00001111 000 014679999999995 4332 23345677788877888999
Q ss_pred EechhhhHhhc
Q 014539 295 TISAQVEAELT 305 (423)
Q Consensus 295 ~~Sa~~e~~i~ 305 (423)
++||+.+.++.
T Consensus 166 ~~Sa~~~~gi~ 176 (193)
T 2oil_A 166 ETSALDSTNVE 176 (193)
T ss_dssp EECTTTCTTHH
T ss_pred EEeCCCCCCHH
Confidence 99999876664
No 67
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=133.22 Aligned_cols=154 Identities=13% Similarity=0.146 Sum_probs=95.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+.+.. ..+.||||||...
T Consensus 28 ~~~ki~vvG~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~- 90 (201)
T 2hup_A 28 FLFKLVLVGDASVGKTCVVQRFKTGA-FSERQGSTIGVDFTMKTLEIQGKR---------------VKLQIWDTAGQER- 90 (201)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSC-C----------CEEEEEEEETTEE---------------EEEEEECCTTCGG-
T ss_pred cceEEEEECcCCCCHHHHHHHHhhCC-CCCCCCCCcceEEEEEEEEECCEE---------------EEEEEEECCCcHh-
Confidence 34899999999999999999999543 322333444445555555554422 4699999999742
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
+.......++.+|++++|+|+++... ++ .
T Consensus 91 ------~~~~~~~~~~~~d~iilv~D~~~~~s-------------~~---------------~----------------- 119 (201)
T 2hup_A 91 ------FRTITQSYYRSANGAILAYDITKRSS-------------FL---------------S----------------- 119 (201)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTBHHH-------------HH---------------T-----------------
T ss_pred ------HHHHHHHHHhhCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 23345677899999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCC-cE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS-GR 293 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~-~~ 293 (423)
....++.+.... ....|+++++||.| +... .....+++++++...+. ++
T Consensus 120 ---~~~~~~~i~~~~------------------------~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 169 (201)
T 2hup_A 120 ---VPHWIEDVRKYA------------------------GSNIVQLLIGNKSD--LSEL-REVSLAEAQSLAEHYDILCA 169 (201)
T ss_dssp ---HHHHHHHHHHHS------------------------CTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCSEE
T ss_pred ---HHHHHHHHHHhc------------------------CCCCCEEEEEECCc--cccc-cccCHHHHHHHHHHcCCCEE
Confidence 000111111000 14679999999995 4322 23346678888887888 89
Q ss_pred EEechhhhHhhcC
Q 014539 294 VTISAQVEAELTE 306 (423)
Q Consensus 294 v~~Sa~~e~~i~~ 306 (423)
+++||+.+.++.+
T Consensus 170 ~~~SA~~g~gi~~ 182 (201)
T 2hup_A 170 IETSAKDSSNVEE 182 (201)
T ss_dssp EECBTTTTBSHHH
T ss_pred EEEeCCCCCCHHH
Confidence 9999998876643
No 68
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.60 E-value=2.9e-14 Score=132.85 Aligned_cols=91 Identities=22% Similarity=0.280 Sum_probs=63.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++. ...++++|++|.+...+.....+ ..+.||||||+...
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~ 89 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRA-NVDVQSYSFTTKNLYVGHFDHKL-----------------NKYQIIDTPGLLDR 89 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTT-CEEEECC-----CEEEEEEEETT-----------------EEEEEEECTTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCCcceeeeeeeeecCC-----------------CeEEEEECCCCcCc
Confidence 3589999999999999999999954 45578899999998887776554 56999999999654
Q ss_pred CCcccc-h-hhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEG-L-GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~-l-~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...... + ........+.+|++++|+|+++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~ 120 (228)
T 2qu8_A 90 AFENRNTIEMTTITALAHINGVILFIIDISE 120 (228)
T ss_dssp CGGGCCHHHHHHHHHHHTSSEEEEEEEETTC
T ss_pred ccchhhhHHHHHHHHhhccccEEEEEEeccc
Confidence 322111 1 1122234678899999999864
No 69
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.9e-14 Score=130.11 Aligned_cols=150 Identities=14% Similarity=0.095 Sum_probs=94.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcc-eecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~-~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
.++|+++|.+|||||||+|+|++.... ...+.+++|. ....+.+++.. ..+.+|||||....
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 85 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASF--MTKTVPCGNEL---------------HKFLIWDTAGQERF 85 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEE--EEEEEECSSSE---------------EEEEEEEECCSGGG
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeE--EEEEEEeCCEE---------------EEEEEEcCCCchhh
Confidence 489999999999999999999955421 2333333332 22333343322 46999999996432
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.......++.+|++++|+|+++... +.. +
T Consensus 86 -------~~~~~~~~~~~d~iilV~d~~~~~s-------------~~~------------~------------------- 114 (192)
T 2fg5_A 86 -------HSLAPMYYRGSAAAVIVYDITKQDS-------------FYT------------L------------------- 114 (192)
T ss_dssp -------GGGTHHHHTTCSEEEEEEETTCTHH-------------HHH------------H-------------------
T ss_pred -------HhhhHHhhccCCEEEEEEeCCCHHH-------------HHH------------H-------------------
Confidence 2344567889999999999753211 000 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
...+..+.+. .....|+++++||.| +.+. .....+++++++...+.+++
T Consensus 115 ----~~~~~~i~~~------------------------~~~~~piiiv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 163 (192)
T 2fg5_A 115 ----KKWVKELKEH------------------------GPENIVMAIAGNKCD--LSDI-REVPLKDAKEYAESIGAIVV 163 (192)
T ss_dssp ----HHHHHHHHHH------------------------SCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHTTTCEEE
T ss_pred ----HHHHHHHHHh------------------------CCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEEE
Confidence 0011111000 013679999999995 4322 23456778888888888999
Q ss_pred EechhhhHhh
Q 014539 295 TISAQVEAEL 304 (423)
Q Consensus 295 ~~Sa~~e~~i 304 (423)
++||+.+.++
T Consensus 164 ~~Sa~~~~gi 173 (192)
T 2fg5_A 164 ETSAKNAINI 173 (192)
T ss_dssp ECBTTTTBSH
T ss_pred EEeCCCCcCH
Confidence 9999886554
No 70
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.60 E-value=1.8e-14 Score=125.97 Aligned_cols=85 Identities=18% Similarity=0.106 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+++... ....|..+.+.....+.+++.. ..+.+|||||...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~-- 67 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFH-EFQESTIGAAFLTQTVCLDDTT---------------VKFEIWDTAGQER-- 67 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCC-TTCCCCSSEEEEEEEEEETTEE---------------EEEEEEEECCSGG--
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCC-CCCCCccceEEEEEEEEECCEE---------------EEEEEEeCCCcHH--
Confidence 479999999999999999999954432 1122322222223334443322 4699999999743
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.+|++++|+|+++
T Consensus 68 -----~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1r2q_A 68 -----YHSLAPMYYRGAQAAIVVYDITN 90 (170)
T ss_dssp -----GGGGHHHHHTTCSEEEEEEETTC
T ss_pred -----hhhhhHHhccCCCEEEEEEECCC
Confidence 22345667889999999999753
No 71
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.60 E-value=3.2e-15 Score=139.42 Aligned_cols=152 Identities=18% Similarity=0.180 Sum_probs=97.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+|||.+|||||||+++++ .........|....+.....+.+.+.. ..+.||||||..+..
T Consensus 13 ~~KivlvGd~~VGKTsLi~r~~-~~~f~~~~~~Tig~d~~~k~~~~~~~~---------------v~l~iwDtaGqe~~~ 76 (216)
T 4dkx_A 13 KFKLVFLGEQSVGKTSLITRFM-YDSFDNTYQATIGIDFLSKTMYLEDRT---------------IRLQLWDTAGLERFR 76 (216)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH-HSCCC----------CEEEEEECSSCE---------------EEEEEECCSCTTTCG
T ss_pred cEEEEEECcCCcCHHHHHHHHH-hCCCCCCcCCccceEEEEEEEEecceE---------------EEEEEEECCCchhhh
Confidence 3799999999999999999999 444444434544445555555555533 568999999986543
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
+ ....+++.+|++++|+|..+... + +....+
T Consensus 77 ~-------l~~~~~~~a~~~ilv~di~~~~S----------------f------------~~i~~~-------------- 107 (216)
T 4dkx_A 77 S-------LIPSYIRDSAAAVVVYDITNVNS----------------F------------QQTTKW-------------- 107 (216)
T ss_dssp G-------GHHHHHTTCSEEEEEEETTCHHH----------------H------------HTHHHH--------------
T ss_pred h-------HHHHHhccccEEEEEeecchhHH----------------H------------HHHHHH--------------
Confidence 3 45567899999999999753211 1 110011
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
++.+.... ....|+++|+||.| +.+. +....++.++++++.+..++.
T Consensus 108 ------~~~i~~~~------------------------~~~~piilVgNK~D--l~~~-r~V~~~e~~~~a~~~~~~~~e 154 (216)
T 4dkx_A 108 ------IDDVRTER------------------------GSDVIIMLVGNKTD--LADK-RQVSIEEGERKAKELNVMFIE 154 (216)
T ss_dssp ------HHHHHHHH------------------------TTSSEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEEE
T ss_pred ------HHHHHHhc------------------------CCCCeEEEEeeccc--hHhc-CcccHHHHhhHHHHhCCeeEE
Confidence 11111000 13568999999995 4332 345677888899888999999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.+|.
T Consensus 155 ~SAktg~nV~ 164 (216)
T 4dkx_A 155 TSAKAGYNVK 164 (216)
T ss_dssp EBTTTTBSHH
T ss_pred EeCCCCcCHH
Confidence 9999987763
No 72
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.60 E-value=1.9e-14 Score=129.30 Aligned_cols=152 Identities=17% Similarity=0.154 Sum_probs=98.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++. .......|..+.+.....+.+.+.. ..+.||||||.....
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~-~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 78 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD-TFDPELAATIGVDFKVKTISVDGNK---------------AKLAIWDTAGQERFR 78 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS-CCCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSSGGGC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC-CCCccCCCccceEEEEEEEEECCeE---------------EEEEEEeCCCchhhh
Confidence 379999999999999999999954 3333344554555555555554422 469999999975432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
......++.+|++++|+|+++... +. . +.
T Consensus 79 -------~~~~~~~~~~d~ii~v~d~~~~~s-------------~~---~---------~~------------------- 107 (195)
T 1x3s_A 79 -------TLTPSYYRGAQGVILVYDVTRRDT-------------FV---K---------LD------------------- 107 (195)
T ss_dssp -------CSHHHHHTTCCEEEEEEETTCHHH-------------HH---T---------HH-------------------
T ss_pred -------hhhHHHhccCCEEEEEEECcCHHH-------------HH---H---------HH-------------------
Confidence 235567889999999999753210 00 0 00
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
..+..+ ... ......|+++++||.| +... ....++..+++...+.++++
T Consensus 108 ----~~~~~i----~~~-------------------~~~~~~p~ilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~~ 156 (195)
T 1x3s_A 108 ----NWLNEL----ETY-------------------CTRNDIVNMLVGNKID--KENR--EVDRNEGLKFARKHSMLFIE 156 (195)
T ss_dssp ----HHHHHH----TTC-------------------CSCSCCEEEEEEECTT--SSSC--CSCHHHHHHHHHHTTCEEEE
T ss_pred ----HHHHHH----HHh-------------------cCcCCCcEEEEEECCc--Cccc--ccCHHHHHHHHHHcCCEEEE
Confidence 000100 000 0014679999999995 4322 33456677788788889999
Q ss_pred echhhhHhhc
Q 014539 296 ISAQVEAELT 305 (423)
Q Consensus 296 ~Sa~~e~~i~ 305 (423)
+||+.+.++.
T Consensus 157 ~Sa~~~~gi~ 166 (195)
T 1x3s_A 157 ASAKTCDGVQ 166 (195)
T ss_dssp CCTTTCTTHH
T ss_pred ecCCCCCCHH
Confidence 9999876663
No 73
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=134.39 Aligned_cols=153 Identities=18% Similarity=0.121 Sum_probs=94.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++ ........|+.+.+.....+.+++.. ..+.||||||.....
T Consensus 25 ~~ki~v~G~~~~GKSsLi~~l~~-~~~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~~ 88 (200)
T 2o52_A 25 LFKFLVIGSAGTGKSCLLHQFIE-NKFKQDSNHTIGVEFGSRVVNVGGKT---------------VKLQIWDTAGQERFR 88 (200)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHC-------------CCEEEEEEEETTEE---------------EEEEEECCTTHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHh-CCCCccCCCcccceeEEEEEEECCee---------------eEEEEEcCCCcHhHH
Confidence 48999999999999999999994 44444455666666666666665422 469999999974322
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
......++.+|++++|+|+++... ++ .
T Consensus 89 -------~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------ 115 (200)
T 2o52_A 89 -------SVTRSYYRGAAGALLVYDITSRET-------------YN---------------S------------------ 115 (200)
T ss_dssp -------CCCHHHHTTCSEEEEEEETTCHHH-------------HH---------------T------------------
T ss_pred -------HHHHHHhccCCEEEEEEECcCHHH-------------HH---------------H------------------
Confidence 224466889999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +... ......++.+++...+.++++
T Consensus 116 --~~~~~~~~~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 166 (200)
T 2o52_A 116 --LAAWLTDARTL------------------------ASPNIVVILCGNKKD--LDPE-REVTFLEASRFAQENELMFLE 166 (200)
T ss_dssp --HHHHHHHHHHH------------------------TCTTCEEEEEEECGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHh------------------------cCCCCcEEEEEECCC--cccc-cccCHHHHHHHHHHcCCEEEE
Confidence 00001111000 014679999999995 3322 233456677788788889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 167 ~SA~~g~gi~~ 177 (200)
T 2o52_A 167 TSALTGENVEE 177 (200)
T ss_dssp ECTTTCTTHHH
T ss_pred EeCCCCCCHHH
Confidence 99999877643
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.60 E-value=1.8e-14 Score=127.70 Aligned_cols=87 Identities=21% Similarity=0.161 Sum_probs=56.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++. .......|..+.+.....+.+++.. ...+.+|||||....
T Consensus 7 ~~~~i~v~G~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~l~Dt~G~~~~ 71 (182)
T 1ky3_A 7 NILKVIILGDSGVGKTSLMHRYVND-KYSQQYKATIGADFLTKEVTVDGDK--------------VATMQVWDTAGQERF 71 (182)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS-CCCTTC---CCCSCEEEEECCSSSC--------------CEEEEEECCC-----
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC-cCCcccCCccceEEEEEEEEEcCCc--------------EEEEEEEECCCChHh
Confidence 3479999999999999999999954 3334445666667777766665211 246999999996432
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ......++.+|++++|+|+++
T Consensus 72 ~-------~~~~~~~~~~d~~i~v~d~~~ 93 (182)
T 1ky3_A 72 Q-------SLGVAFYRGADCCVLVYDVTN 93 (182)
T ss_dssp ------------CCSTTCCEEEEEEETTC
T ss_pred h-------hhhHHHhhcCCEEEEEEECCC
Confidence 2 234566789999999999753
No 75
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.59 E-value=9.8e-15 Score=132.99 Aligned_cols=154 Identities=19% Similarity=0.136 Sum_probs=95.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.... ..++.|+.......+.+.+. ...+.||||||....
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~~ 85 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEGEFS--EGYDPTVENTYSKIVTLGKD---------------EFHLHLVDTAGQDEY 85 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCC--SCCCCCSEEEEEEEEC-------------------CEEEEEEEECCCCTT
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhCCCC--CCCCCccceEEEEEEEECCE---------------EEEEEEEECCCccch
Confidence 3589999999999999999999955433 33444444444444444332 256899999997544
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. .....++.+|++++|+|+++... ++ .
T Consensus 86 ~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~----------------- 113 (201)
T 3oes_A 86 SI-------LPYSFIIGVHGYVLVYSVTSLHS-------------FQ---------------V----------------- 113 (201)
T ss_dssp CC-------CCGGGTTTCCEEEEEEETTCHHH-------------HH---------------H-----------------
T ss_pred HH-------HHHHHHhcCCEEEEEEeCCCHHH-------------HH---------------H-----------------
Confidence 33 23456788999999999753210 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+.. .......|+++++||.| +... ......+.++++...+.+++
T Consensus 114 ---~~~~~~~i~~-----------------------~~~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 164 (201)
T 3oes_A 114 ---IESLYQKLHE-----------------------GHGKTRVPVVLVGNKAD--LSPE-REVQAVEGKKLAESWGATFM 164 (201)
T ss_dssp ---HHHHHHHHHC----------------------------CCCEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEEE
T ss_pred ---HHHHHHHHHH-----------------------hcCCCCCCEEEEEECcc--Cccc-cccCHHHHHHHHHHhCCeEE
Confidence 0001111100 00124679999999995 3322 23345667777777788999
Q ss_pred EechhhhHhhcC
Q 014539 295 TISAQVEAELTE 306 (423)
Q Consensus 295 ~~Sa~~e~~i~~ 306 (423)
++||+.+.++.+
T Consensus 165 ~~Sa~~~~~v~~ 176 (201)
T 3oes_A 165 ESSARENQLTQG 176 (201)
T ss_dssp ECCTTCHHHHHH
T ss_pred EEeCCCCCCHHH
Confidence 999999877743
No 76
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.59 E-value=1.4e-14 Score=127.78 Aligned_cols=155 Identities=17% Similarity=0.099 Sum_probs=89.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|++.......+.+++| .....+.+++.. .++.+|||||.....
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~~~~~~~--~~~~~~~~~~~~---------------~~~~~~D~~g~~~~~ 66 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGKQERDLHEQLGED--VYERTLTVDGED---------------TTLVVVDTWEAEKLD 66 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC-----CCCSSSS--EEEEEEEETTEE---------------EEEEEECCC------
T ss_pred EEEEEEECCCCccHHHHHHHHhcCCCccccCccccc--eeEEEEEECCEE---------------EEEEEEecCCCCccc
Confidence 479999999999999999999966555444444443 334445554422 468999999985321
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .......++.+|++++|+|+++... ++.+ .
T Consensus 67 ~-----~~~~~~~~~~~~~~i~v~d~~~~~s-------------~~~~------------~------------------- 97 (175)
T 2nzj_A 67 K-----SWSQESCLQGGSAYVIVYSIADRGS-------------FESA------------S------------------- 97 (175)
T ss_dssp ------CHHHHHTTTSCSEEEEEEETTCHHH-------------HHHH------------H-------------------
T ss_pred h-----hhhHHhhcccCCEEEEEEECCCHHH-------------HHHH------------H-------------------
Confidence 1 1122345788999999999753210 0000 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
..+..+ .. .......|+++++||.| +... .....++.+.++...+.++++
T Consensus 98 ----~~~~~l----~~-------------------~~~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 147 (175)
T 2nzj_A 98 ----ELRIQL----RR-------------------THQADHVPIILVGNKAD--LARC-REVSVEEGRACAVVFDCKFIE 147 (175)
T ss_dssp ----HHHHHH----HH-------------------CC----CCEEEEEECTT--CTTT-CCSCHHHHHHHHHHHTSEEEE
T ss_pred ----HHHHHH----HH-------------------hhccCCCCEEEEEEChh--hccc-cccCHHHHHHHHHHcCCeEEE
Confidence 000000 00 00014689999999994 4432 233456667777777889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 148 ~Sa~~g~gi~~ 158 (175)
T 2nzj_A 148 TSATLQHNVAE 158 (175)
T ss_dssp CBTTTTBSHHH
T ss_pred EecCCCCCHHH
Confidence 99999866643
No 77
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.59 E-value=1.1e-14 Score=130.40 Aligned_cols=88 Identities=26% Similarity=0.448 Sum_probs=66.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+ +....++.+|++|.++..+.+.+.+ ..+.+|||||+....
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~-~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 68 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALT-GENVYIGNWPGVTVEKKEGEFEYNG-----------------EKFKVVDLPGVYSLT 68 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH-TTCEEEEECTTSCCEEEEEEEEETT-----------------EEEEEEECCCCSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHh-CCCccccCCCCeeccceEEEEEeCC-----------------cEEEEEECCCcCccc
Confidence 3799999999999999999999 4456788899999999888887765 569999999987553
Q ss_pred Cc--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQ--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. .+.+...++.. ..+|++++|+|++
T Consensus 69 ~~~~~~~~~~~~~~~-~~~~~~i~v~d~~ 96 (188)
T 2wjg_A 69 ANSIDEIIARDYIIN-EKPDLVVNIVDAT 96 (188)
T ss_dssp SSSHHHHHHHHHHHH-HCCSEEEEEEEGG
T ss_pred cccHHHHHHHHHHhc-cCCCEEEEEecch
Confidence 21 11122222211 3599999999964
No 78
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.59 E-value=3e-14 Score=127.01 Aligned_cols=152 Identities=16% Similarity=0.140 Sum_probs=96.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++. .. ...++.++.........+++.. ..+.+|||||....
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~-~~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 79 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK-IF-VDDYDPTIEDSYLKHTEIDNQW---------------AILDVLDTAGQEEF 79 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS-CC-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCSCGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC-CC-CCCCCCCccceeEEEEEeCCcE---------------EEEEEEECCCchhh
Confidence 3489999999999999999999944 32 2334444444444445554422 34778999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. .....++++|++++|+|+++... ++ .
T Consensus 80 ~~-------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~----------------- 107 (183)
T 3kkq_A 80 SA-------MREQYMRTGDGFLIVYSVTDKAS-------------FE---------------H----------------- 107 (183)
T ss_dssp CS-------SHHHHHHHCSEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred HH-------HHHHHHhcCCEEEEEEECCCHHH-------------HH---------------H-----------------
Confidence 22 34566788999999999753211 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....+..+.. .......|+++++||.| +... .....+++++++...+.+++
T Consensus 108 ---~~~~~~~~~~-----------------------~~~~~~~p~ilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 158 (183)
T 3kkq_A 108 ---VDRFHQLILR-----------------------VKDRESFPMILVANKVD--LMHL-RKVTRDQGKEMATKYNIPYI 158 (183)
T ss_dssp ---HHHHHHHHHH-----------------------HHTSSCCCEEEEEECTT--CSTT-CCSCHHHHHHHHHHHTCCEE
T ss_pred ---HHHHHHHHHH-----------------------hcCCCCCcEEEEEECCC--chhc-cCcCHHHHHHHHHHhCCeEE
Confidence 0000111100 01124679999999995 4332 24456677888888889999
Q ss_pred Eechh-hhHhh
Q 014539 295 TISAQ-VEAEL 304 (423)
Q Consensus 295 ~~Sa~-~e~~i 304 (423)
++||+ .+.++
T Consensus 159 ~~Sa~~~~~~v 169 (183)
T 3kkq_A 159 ETSAKDPPLNV 169 (183)
T ss_dssp EEBCSSSCBSH
T ss_pred EeccCCCCCCH
Confidence 99999 76555
No 79
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.59 E-value=6.6e-14 Score=121.52 Aligned_cols=149 Identities=18% Similarity=0.162 Sum_probs=94.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++... ...++.++.+.....+.+.+.. ..+.+|||||.....
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~D~~G~~~~~- 65 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQNHF--VDECDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYS- 65 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCSSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcC--ccccCCccceEEEEEEEECCEE---------------EEEEEEECCCchhhh-
Confidence 6899999999999999999995532 2334444444444444444322 458999999975432
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
......++.+|++++|+|+++.. .+ +.
T Consensus 66 ------~~~~~~~~~~~~~i~v~d~~~~~----------------~~------------~~------------------- 92 (166)
T 2ce2_X 66 ------AMRDQYMRTGEGFLCVFAINNTK----------------SF------------ED------------------- 92 (166)
T ss_dssp ------HHHHHHHHHCSEEEEEEETTCHH----------------HH------------HH-------------------
T ss_pred ------HHHHHhhccCCEEEEEEECCCHH----------------HH------------HH-------------------
Confidence 23445678899999999975311 00 00
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
....++.+... ......|+++++||.| .... ....+++++++.+.+.+++++
T Consensus 93 -~~~~~~~i~~~-----------------------~~~~~~p~iiv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~~~ 144 (166)
T 2ce2_X 93 -IHQYREQIKRV-----------------------KDSDDVPMVLVGNKSD--LAAR--TVESRQAQDLARSYGIPYIET 144 (166)
T ss_dssp -HHHHHHHHHHH-----------------------HTCSCCCEEEEEECTT--CSCC--CSCHHHHHHHHHHHTCCEEEE
T ss_pred -HHHHHHHHHHh-----------------------cCCCCCcEEEEEEchh--hhhc--ccCHHHHHHHHHHcCCeEEEe
Confidence 00111111111 1113679999999995 3332 344667777777778899999
Q ss_pred chhhhHhh
Q 014539 297 SAQVEAEL 304 (423)
Q Consensus 297 Sa~~e~~i 304 (423)
||+.+.++
T Consensus 145 Sa~~~~gi 152 (166)
T 2ce2_X 145 SAKTRQGV 152 (166)
T ss_dssp CTTTCTTH
T ss_pred cCCCCCCH
Confidence 99987655
No 80
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.3e-14 Score=134.70 Aligned_cols=151 Identities=16% Similarity=0.111 Sum_probs=93.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+|+|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.||||||.....
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 76 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKNE-FNMDSKSTIGVEFATRTLEIEGKR---------------IKAQIWDTAGQERYR 76 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHCC-CCC------CCSEEEEEEEETTEE---------------EEEEEECCTTTTTTT
T ss_pred eeEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCcccceeEEEEEEECCEE---------------EEEEEEECCCccchh
Confidence 4799999999999999999999544 333445666666666666665422 468999999975443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
. .....++.+|++++|+|+++... ++ .
T Consensus 77 ~-------~~~~~~~~~d~vilV~D~~~~~s-------------~~---------------~------------------ 103 (223)
T 3cpj_B 77 A-------ITSAYYRGAVGALIVYDISKSSS-------------YE---------------N------------------ 103 (223)
T ss_dssp C-------CCGGGTTTCCEEEEEEC-CCHHH-------------HH---------------H------------------
T ss_pred h-------hHHHHhccCCEEEEEEeCCCHHH-------------HH---------------H------------------
Confidence 2 23456789999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
....+..+... .....|+++++||.| +... .....+++.+++...+.++++
T Consensus 104 --~~~~l~~i~~~------------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 154 (223)
T 3cpj_B 104 --CNHWLSELREN------------------------ADDNVAVGLIGNKSD--LAHL-RAVPTEESKTFAQENQLLFTE 154 (223)
T ss_dssp --HHHHHHHHHHH------------------------CC--CEEEEEECCGG--GGGG-CCSCHHHHHHHHHHTTCEEEE
T ss_pred --HHHHHHHHHHh------------------------CCCCCeEEEEEECcc--cccc-cccCHHHHHHHHHHcCCEEEE
Confidence 00011111100 013679999999995 4322 133456777888778889999
Q ss_pred echhhhHhh
Q 014539 296 ISAQVEAEL 304 (423)
Q Consensus 296 ~Sa~~e~~i 304 (423)
+||+.+.++
T Consensus 155 ~Sa~~~~gi 163 (223)
T 3cpj_B 155 TSALNSENV 163 (223)
T ss_dssp CCCC-CCCH
T ss_pred EeCCCCCCH
Confidence 999987655
No 81
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.58 E-value=3.1e-14 Score=124.65 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|....+.....+.+.+.. ..+.+|||||+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~Dt~G~~~~- 68 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS-FDPNINPTIGASFMTKTVQYQNEL---------------HKFLIWDTAGLERF- 68 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC-CCTTCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGG-
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC-CCCCCCCceeEEEEEEEEEECCeE---------------EEEEEEcCCCchhh-
Confidence 3799999999999999999999544 222222222222222333333321 46899999998432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......++.+|++++|+|+++
T Consensus 69 ------~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 69 ------RALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp ------GGGTHHHHTTCSEEEEEEETTC
T ss_pred ------hcccHhhCcCCCEEEEEEECcC
Confidence 2244566889999999999753
No 82
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.58 E-value=4.7e-14 Score=141.04 Aligned_cols=92 Identities=27% Similarity=0.304 Sum_probs=69.0
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.||||||||+|+|++. ...++++|++|.+...+.+...+ ..+.+|||||+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 226 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA-KPEIASYPFTTRGINVGQFEDGY-----------------FRYQIIDTPGLLD 226 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS-CCEEECCTTCSSCEEEEEEEETT-----------------EEEEEEECTTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC-CCccCCCCCeeeceeEEEEEecC-----------------ceEEEEeCCCccc
Confidence 34589999999999999999999954 47788899999998888776544 4699999999965
Q ss_pred CCCcc-cch-hhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQG-EGL-GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~-~~l-~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..... ... ...+......+|++++|+|++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~ 258 (357)
T 2e87_A 227 RPISERNEIEKQAILALRYLGNLIIYIFDPSE 258 (357)
T ss_dssp SCSTTSCHHHHHHHHGGGGTCSEEEEEECTTC
T ss_pred cchhhhhHHHHHHHHHHHhcCCEEEEEEeCCc
Confidence 43221 111 1233344457999999999754
No 83
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.58 E-value=1.7e-14 Score=148.27 Aligned_cols=92 Identities=32% Similarity=0.462 Sum_probs=65.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+|||.||||||||+|+|+|...+.++++|+||+++..+.+.+.+ ..+.+|||||+.+.
T Consensus 179 ~~~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g-----------------~~~~l~Dt~G~~~~ 241 (439)
T 1mky_A 179 DAIKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDG-----------------RKYVFVDTAGLRRK 241 (439)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETT-----------------EEEEESSCSCC---
T ss_pred cCceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECC-----------------EEEEEEECCCCccc
Confidence 3489999999999999999999988778899999999999999988876 45899999998543
Q ss_pred CCcc----cch-hhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQG----EGL-GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~----~~l-~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.... +.+ ....+.+++.+|++++|+|+++
T Consensus 242 ~~~~~~~~e~~~~~~~~~~i~~ad~vllv~d~~~ 275 (439)
T 1mky_A 242 SRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQ 275 (439)
T ss_dssp --------CCSCCHHHHHHHHHCSEEEEEEETTT
T ss_pred cccchhhHHHHHHHHHHHHHhhCCEEEEEEeCCC
Confidence 3211 111 1234678899999999999753
No 84
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.58 E-value=9.9e-15 Score=140.21 Aligned_cols=87 Identities=29% Similarity=0.471 Sum_probs=67.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.||||||||+|+|+|. ...+++.|++|.+...+.+...+ ..+.+|||||+.....
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~l~DtpG~~~~~~ 65 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL-RQHVGNWPGVTVEKKEGIMEYRE-----------------KEFLVVDLPGIYSLTA 65 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT-CEEEEECTTSSCEEEEEEEEETT-----------------EEEEEEECCCCSCCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhCC-CcccCCCCCeEEEeeEEEEEECC-----------------ceEEEEeCCCcccccc
Confidence 68999999999999999999954 45889999999999988887766 4599999999975443
Q ss_pred c--ccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 Q--GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~--~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .+.+...++ ..+++|++++|+|++
T Consensus 66 ~~~~~~~~~~~~-~~~~~d~vi~v~D~~ 92 (271)
T 3k53_A 66 HSIDELIARNFI-LDGNADVIVDIVDST 92 (271)
T ss_dssp SCHHHHHHHHHH-HTTCCSEEEEEEEGG
T ss_pred CCHHHHHHHHhh-hccCCcEEEEEecCC
Confidence 2 111212222 126899999999975
No 85
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.58 E-value=1.2e-14 Score=132.19 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=56.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|++.. ......|..+.+.....+.+++.. ..+.||||||...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~ 89 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKNE-FRENISATLGVDFQMKTLIVDGER---------------TVLQLWDTAGQER 89 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHCC-CC----------CEEEEEEETTEE---------------EEEEEEECTTCTT
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhCC-CCccCCCCccceeEEEEEEECCEE---------------EEEEEEECCCCcc
Confidence 345899999999999999999999544 222223333334444445554422 4599999999743
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++.+|++++|+|+++
T Consensus 90 -------~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 90 -------FRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp -------CHHHHHHHHHHCSEEEEEEETTC
T ss_pred -------hhhhHHHHHhhCCEEEEEEECCC
Confidence 23356677899999999999753
No 86
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.58 E-value=3.9e-15 Score=134.39 Aligned_cols=154 Identities=15% Similarity=0.130 Sum_probs=98.0
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|++... .....|..+.+.....+.+.+.. ..+.||||||..
T Consensus 21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~- 83 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVGKTSFLFRYADDTF-TPAFVSTVGIDFKVKTVYRHEKR---------------VKLQIWDTAGQE- 83 (191)
T ss_dssp EECEEEEEEESTTSSHHHHHHHHHHHTT-CCCEEEEETTTEEEEEEEETTTT---------------EEEEEECHHHHH-
T ss_pred CeeeEEEEECCCCcCHHHHHHHHhcCCC-CcccCCCeeeEEEEEEEEECCEE---------------EEEEEEeCCChH-
Confidence 4558999999999999999999995442 22222333334444444444322 569999999963
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
.+.......++++|++++|+|+++... ++ .
T Consensus 84 ------~~~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~---------------- 113 (191)
T 3dz8_A 84 ------RYRTITTAYYRGAMGFILMYDITNEES-------------FN---------------A---------------- 113 (191)
T ss_dssp ------HCHHHHHHHHTTCCEEEEEEETTCHHH-------------HH---------------T----------------
T ss_pred ------HHHHHHHHHHccCCEEEEEEECcCHHH-------------HH---------------H----------------
Confidence 233456677899999999999753210 00 0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
....++.+.. ......|+++++||.| +.+. .....++.+.++...+.++
T Consensus 114 ----~~~~~~~i~~------------------------~~~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 162 (191)
T 3dz8_A 114 ----VQDWATQIKT------------------------YSWDNAQVILVGNKCD--MEEE-RVVPTEKGQLLAEQLGFDF 162 (191)
T ss_dssp ----HHHHHHHHHH------------------------HSCTTCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHHTCEE
T ss_pred ----HHHHHHHHHH------------------------hcCCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCeE
Confidence 0001111110 0014679999999995 4322 2345566777777778999
Q ss_pred EEechhhhHhhc
Q 014539 294 VTISAQVEAELT 305 (423)
Q Consensus 294 v~~Sa~~e~~i~ 305 (423)
+++||+.+.++.
T Consensus 163 ~~~Sa~~~~gi~ 174 (191)
T 3dz8_A 163 FEASAKENISVR 174 (191)
T ss_dssp EECBTTTTBSHH
T ss_pred EEEECCCCCCHH
Confidence 999999876663
No 87
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.57 E-value=2.3e-14 Score=131.77 Aligned_cols=164 Identities=15% Similarity=0.130 Sum_probs=97.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+|+|.+|||||||+|+|++.. ......|..+.+.....+.+++.... ....+.....+.||||||..
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~l~l~Dt~G~~--- 95 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNK-FNPKFITTVGIDFREKRVVYNAQGPN-----GSSGKAFKVHLQLWDTAGQE--- 95 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSC-CCCEEEEEEEEEEEEEEEEEEC------------CCEEEEEEEEEEEESHH---
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC-CCcCCCCceeEEEEEEEEEECCcccc-----ccccCceeEEEEEEECCCcH---
Confidence 4899999999999999999999433 32222333333333333433331000 00000012569999999963
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhh
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLK 215 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~ 215 (423)
.+.......++.+|++++|+|+++... + +....++....
T Consensus 96 ----~~~~~~~~~~~~~d~iilV~D~~~~~s-------------~---------------~~~~~~l~~i~--------- 134 (217)
T 2f7s_A 96 ----RFRSLTTAFFRDAMGFLLMFDLTSQQS-------------F---------------LNVRNWMSQLQ--------- 134 (217)
T ss_dssp ----HHHHHHHHHHTTCCEEEEEEETTCHHH-------------H---------------HHHHHHHHTCC---------
T ss_pred ----hHHhHHHHHhcCCCEEEEEEECcCHHH-------------H---------------HHHHHHHHHHH---------
Confidence 233456677899999999999753110 0 00001111100
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEE
Q 014539 216 DAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVT 295 (423)
Q Consensus 216 ~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~ 295 (423)
.. ......|+++++||.| +... .....+++++++...+.++++
T Consensus 135 ---------------~~-------------------~~~~~~piilV~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~~ 177 (217)
T 2f7s_A 135 ---------------AN-------------------AYCENPDIVLIGNKAD--LPDQ-REVNERQARELADKYGIPYFE 177 (217)
T ss_dssp ---------------CC-------------------CTTTCCEEEEEEECTT--CGGG-CCSCHHHHHHHHHHTTCCEEE
T ss_pred ---------------Hh-------------------cCcCCCCEEEEEECCc--cccc-cccCHHHHHHHHHHCCCcEEE
Confidence 00 0014689999999995 4332 233456777888778889999
Q ss_pred echhhhHhhcC
Q 014539 296 ISAQVEAELTE 306 (423)
Q Consensus 296 ~Sa~~e~~i~~ 306 (423)
+||+.+.++.+
T Consensus 178 ~Sa~~g~gi~~ 188 (217)
T 2f7s_A 178 TSAATGQNVEK 188 (217)
T ss_dssp EBTTTTBTHHH
T ss_pred EECCCCCCHHH
Confidence 99999877643
No 88
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.57 E-value=3.3e-14 Score=126.22 Aligned_cols=78 Identities=19% Similarity=0.145 Sum_probs=55.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|+++.... ..| |+.+.....+.+++.. ..+.+|||||...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~~~~~--~~~-t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~-- 66 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTGSYQV--LEK-TESEQYKKEMLVDGQT---------------HLVLIREEAGAPD-- 66 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHSCCCC--CSS-CSSSEEEEEEEETTEE---------------EEEEEEECSSSCC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCC--cCC-CcceeEEEEEEECCEE---------------EEEEEEECCCCch--
Confidence 4799999999999999999999654332 223 3333334444454422 4689999999743
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+++||++++|+|+++
T Consensus 67 ----------~~~~~~~d~~ilv~D~~~ 84 (178)
T 2iwr_A 67 ----------AKFSGWADAVIFVFSLED 84 (178)
T ss_dssp ----------HHHHHHCSEEEEEEETTC
T ss_pred ----------hHHHHhCCEEEEEEECcC
Confidence 346788999999999753
No 89
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.57 E-value=2.5e-15 Score=155.11 Aligned_cols=90 Identities=23% Similarity=0.264 Sum_probs=61.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+|||.||||||||+|+|+|...+.+++.|++|++...+.+...+ ..+.+|||||+....
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~~-----------------~~~~liDT~G~~~~~ 85 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWLN-----------------YDFNLIDTGGIDIGD 85 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEEEC-----------CEEEECTTCS-----------------SCCEEECCCC-----
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEECC-----------------ceEEEEECCCCCCcc
Confidence 368999999999999999999988778899999999999988876655 459999999986432
Q ss_pred Cc-ccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQ-GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~-~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. .+.+..++...+++||++|+|+|+.
T Consensus 86 ~~~~~~~~~~~~~~~~~ad~il~VvD~~ 113 (456)
T 4dcu_A 86 EPFLAQIRQQAEIAMDEADVIIFMVNGR 113 (456)
T ss_dssp -CCHHHHHHHHHHHHHHCSEEEEEEESS
T ss_pred hHHHHHHHHHHHhhHhhCCEEEEEEeCC
Confidence 22 3344566778899999999999974
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.57 E-value=4.1e-14 Score=123.99 Aligned_cols=84 Identities=15% Similarity=0.189 Sum_probs=54.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+++. ......|... ......+...+. ...+.+|||||....
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~-~~~~~~~t~~-~~~~~~~~~~~~---------------~~~~~~~Dt~G~~~~- 64 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGT-FRESYIPTVE-DTYRQVISCDKS---------------ICTLQITDTTGSHQF- 64 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCC-CCSSCCCCSC-EEEEEEEEETTE---------------EEEEEEEECCSCSSC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC-CCCCCCCCcc-ccEEEEEEECCE---------------EEEEEEEECCCchhh-
Confidence 4799999999999999999999543 2222222111 111122222221 145899999997432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.......++.+|++++|+|+++
T Consensus 65 ------~~~~~~~~~~~~~~i~v~d~~~ 86 (172)
T 2erx_A 65 ------PAMQRLSISKGHAFILVYSITS 86 (172)
T ss_dssp ------HHHHHHHHHHCSEEEEEEETTC
T ss_pred ------HHHHHHhcccCCEEEEEEECcC
Confidence 2345567888999999999753
No 91
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.57 E-value=6.1e-14 Score=125.93 Aligned_cols=151 Identities=17% Similarity=0.166 Sum_probs=92.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++... ...++.|+.+.....+.+.+.. ..+.+|||||......
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~~~~ 84 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGET---------------CLLDILDTAGQEEYSA 84 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSSC--CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC------
T ss_pred eEEEEECcCCCCHHHHHHHHHcCCC--ccccCCccceEEEEEEEECCEE---------------EEEEEEECCChHHHHH
Confidence 7999999999999999999995542 3345555555544455554422 4589999999753322
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhhhH
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKLKD 216 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~~~ 216 (423)
.....++.+|++++|+|+.+... +. .
T Consensus 85 -------~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~------------------- 110 (190)
T 3con_A 85 -------MRDQYMRTGEGFLCVFAINNSKS-------------FA---------------D------------------- 110 (190)
T ss_dssp ------------CTTCSEEEEEEETTCHHH-------------HH---------------H-------------------
T ss_pred -------HHHHhhCcCCEEEEEEECcCHHH-------------HH---------------H-------------------
Confidence 33456788999999999753210 00 0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEe
Q 014539 217 AEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTI 296 (423)
Q Consensus 217 ~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~ 296 (423)
....++.+... ......|+++++||.| .... ....+++++++++.+.+++++
T Consensus 111 -~~~~~~~i~~~-----------------------~~~~~~p~ilv~nK~D--l~~~--~~~~~~~~~~~~~~~~~~~~~ 162 (190)
T 3con_A 111 -INLYREQIKRV-----------------------KDSDDVPMVLVGNKCD--LPTR--TVDTKQAHELAKSYGIPFIET 162 (190)
T ss_dssp -HHHHHHHHHHH-----------------------HTCSCCCEEEEEECTT--CSCC--CSCHHHHHHHHHHHTCCEEEC
T ss_pred -HHHHHHHHHHH-----------------------hCCCCCeEEEEEECCc--CCcc--cCCHHHHHHHHHHcCCeEEEE
Confidence 00011111110 0114679999999995 4332 345667778887778899999
Q ss_pred chhhhHhhcC
Q 014539 297 SAQVEAELTE 306 (423)
Q Consensus 297 Sa~~e~~i~~ 306 (423)
||+.+.++.+
T Consensus 163 Sa~~~~gi~~ 172 (190)
T 3con_A 163 SAKTRQGVED 172 (190)
T ss_dssp CTTTCTTHHH
T ss_pred eCCCCCCHHH
Confidence 9998776643
No 92
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.57 E-value=6.9e-15 Score=133.58 Aligned_cols=161 Identities=19% Similarity=0.208 Sum_probs=73.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCcc-ccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCT-IEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT-~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+++|.+|||||||+|+|++......+.++.|+ .+.....+.+++.. ....+.+|||||...
T Consensus 19 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~-------------~~~~~~l~Dt~G~~~ 85 (208)
T 2yc2_C 19 LRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTT-------------VSVELFLLDTAGSDL 85 (208)
T ss_dssp EEEEEEEC----------------------------------CEEEECTTSS-------------EEEEEEEEETTTTHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcc-------------cEEEEEEEECCCcHH
Confidence 3479999999999999999999965323333444443 35666666665520 014699999999832
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
........++.+|++++|+|+++... ++ .
T Consensus 86 -------~~~~~~~~~~~~d~~i~v~d~~~~~s-------------~~---------------~---------------- 114 (208)
T 2yc2_C 86 -------YKEQISQYWNGVYYAILVFDVSSMES-------------FE---------------S---------------- 114 (208)
T ss_dssp -------HHHHHSTTCCCCCEEEEEEETTCHHH-------------HH---------------H----------------
T ss_pred -------HHHHHHHHHhhCcEEEEEEECCCHHH-------------HH---------------H----------------
Confidence 23345677889999999999753210 00 0
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCC-CCCCcchHHHHHHHhhcCCc
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQSG 292 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~-~~~~~~~~~i~~~~~~~~~~ 292 (423)
....+..+....+. .....|+++++||.| +.. . .....+++++++...+.+
T Consensus 115 ----~~~~~~~i~~~~~~---------------------~~~~~piilv~nK~D--l~~~~-~~v~~~~~~~~~~~~~~~ 166 (208)
T 2yc2_C 115 ----CKAWFELLKSARPD---------------------RERPLRAVLVANKTD--LPPQR-HQVRLDMAQDWATTNTLD 166 (208)
T ss_dssp ----HHHHHHHHHHHCSC---------------------TTSCCEEEEEEECC----------CCCHHHHHHHHHHTTCE
T ss_pred ----HHHHHHHHHHhhcc---------------------cccCCcEEEEEECcc--cchhh-ccCCHHHHHHHHHHcCCE
Confidence 00111111110000 014689999999995 433 2 233457788888888899
Q ss_pred EEEechhh-hHhhcCC
Q 014539 293 RVTISAQV-EAELTEL 307 (423)
Q Consensus 293 ~v~~Sa~~-e~~i~~l 307 (423)
++++||+. +.++.++
T Consensus 167 ~~~~Sa~~~~~gi~~l 182 (208)
T 2yc2_C 167 FFDVSANPPGKDADAP 182 (208)
T ss_dssp EEECCC-------CHH
T ss_pred EEEeccCCCCcCHHHH
Confidence 99999999 8877544
No 93
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.57 E-value=1.8e-14 Score=130.03 Aligned_cols=154 Identities=15% Similarity=0.104 Sum_probs=94.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|+++. . ...++.|+.+.....+.+.+.. ..+.+|||||....
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 82 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKR-F-ISEYDPNLEDTYSSEETVDHQP---------------VHLRVMDTADLDTP 82 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSS-C-CSCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCC---C
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCC-C-CcccCCCccceeeEEEEECCEE---------------EEEEEEECCCCCcc
Confidence 34899999999999999999999544 2 2444445544333334443322 46899999998654
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.. + ...++.+|++++|+|+.+... ++ ..
T Consensus 83 ~~----~----~~~~~~~~~~ilv~d~~~~~s-------------~~---------------~~---------------- 110 (187)
T 3c5c_A 83 RN----C----ERYLNWAHAFLVVYSVDSRQS-------------FD---------------SS---------------- 110 (187)
T ss_dssp CC----T----HHHHTTCSEEEEEEETTCHHH-------------HH---------------HH----------------
T ss_pred hh----H----HHHHhhCCEEEEEEECCCHHH-------------HH---------------HH----------------
Confidence 32 1 346788999999999753110 11 00
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
...+..+...... .....|+++++||.| +... .....+++.+++...+.+++
T Consensus 111 ----~~~~~~i~~~~~~---------------------~~~~~piilv~nK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 162 (187)
T 3c5c_A 111 ----SSYLELLALHAKE---------------------TQRSIPALLLGNKLD--MAQY-RQVTKAEGVALAGRFGCLFF 162 (187)
T ss_dssp ----HHHHHHHHHHHHH---------------------HCCCCCEEEEEECGG--GGGG-CSSCHHHHHHHHHHHTCEEE
T ss_pred ----HHHHHHHHHHhhc---------------------cCCCCCEEEEEECcc--hhhc-CccCHHHHHHHHHHcCCcEE
Confidence 0011111111000 014679999999995 4322 23345677888888889999
Q ss_pred Eech-hhhHhhc
Q 014539 295 TISA-QVEAELT 305 (423)
Q Consensus 295 ~~Sa-~~e~~i~ 305 (423)
.+|| +.+.++.
T Consensus 163 e~Sa~~~g~gv~ 174 (187)
T 3c5c_A 163 EVSACLDFEHVQ 174 (187)
T ss_dssp ECCSSSCSHHHH
T ss_pred EEeecCccccHH
Confidence 9999 7776663
No 94
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.57 E-value=5e-15 Score=151.42 Aligned_cols=91 Identities=22% Similarity=0.216 Sum_probs=66.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+|+|.+|+|||||+|+|++...+.+++.+++|.++....+.+.+. ..+.||||||+...
T Consensus 33 ~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~----------------~~l~liDTpG~~d~ 96 (423)
T 3qq5_A 33 FRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI----------------GPVTLVDTPGLDDV 96 (423)
T ss_dssp CCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTT----------------EEEEEEECSSTTCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC----------------CeEEEEECcCCCcc
Confidence 45799999999999999999999777777889999999999988877651 26999999999876
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEec
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~ 161 (423)
...+......+...++.||++++|+|+
T Consensus 97 ~~l~~~~~~~~~~~l~~aD~vllVvD~ 123 (423)
T 3qq5_A 97 GELGRLRVEKARRVFYRADCGILVTDS 123 (423)
T ss_dssp CTTCCCCHHHHHHHHTSCSEEEEECSS
T ss_pred cchhHHHHHHHHHHHhcCCEEEEEEeC
Confidence 655555556788889999999999996
No 95
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.56 E-value=3e-14 Score=127.94 Aligned_cols=164 Identities=15% Similarity=0.085 Sum_probs=94.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCC---CccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP---FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p---~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
.++|+++|.||||||||+|.|.+.......+.. .++..+..+.-.. ...+ .... ....++.+|||||..
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~-~~~~----~~~~---~~~~~~~i~Dt~G~~ 85 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFL-PLDI----GEVK---GFKTRFHLYTVPGQV 85 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEEC-CSSC----CCSS---SCEEEEEEEECCSCC
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeec-cccc----cccc---CCceEEEEEeCCChH
Confidence 489999999999999999999854332211100 0011222222110 0000 0000 012469999999985
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhh
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQS 212 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa 212 (423)
... ......+++||++++|+|+++... .+ +.+
T Consensus 86 ~~~-------~~~~~~~~~~d~~i~v~D~~~~~~-------------~~---------~~~------------------- 117 (198)
T 3t1o_A 86 FYN-------ASRKLILRGVDGIVFVADSAPNRL-------------RA---------NAE------------------- 117 (198)
T ss_dssp SCS-------HHHHHHTTTCCEEEEEEECCGGGH-------------HH---------HHH-------------------
T ss_pred HHH-------HHHHHHHhcCCEEEEEEECCcchh-------------hH---------hHH-------------------
Confidence 432 245567899999999999752110 00 000
Q ss_pred hhhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCC-
Q 014539 213 KLKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQS- 291 (423)
Q Consensus 213 ~~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~- 291 (423)
.++.+..++.+-. ......|+++++||.| +.. ....+++++++...+.
T Consensus 118 --------s~~~l~~~l~~~~------------------~~~~~~piilv~NK~D--l~~---~~~~~~~~~~~~~~~~~ 166 (198)
T 3t1o_A 118 --------SMRNMRENLAEYG------------------LTLDDVPIVIQVNKRD--LPD---ALPVEMVRAVVDPEGKF 166 (198)
T ss_dssp --------HHHHHHHHHHHTT------------------CCTTSSCEEEEEECTT--STT---CCCHHHHHHHHCTTCCS
T ss_pred --------HHHHHHHHHHhhc------------------cccCCCCEEEEEEchh--ccc---ccCHHHHHHHHHhcCCc
Confidence 0111111121110 0125789999999994 432 3456788888888888
Q ss_pred cEEEechhhhHhhcC
Q 014539 292 GRVTISAQVEAELTE 306 (423)
Q Consensus 292 ~~v~~Sa~~e~~i~~ 306 (423)
+++++||+.+.++.+
T Consensus 167 ~~~~~Sa~~~~gv~~ 181 (198)
T 3t1o_A 167 PVLEAVATEGKGVFE 181 (198)
T ss_dssp CEEECBGGGTBTHHH
T ss_pred eEEEEecCCCcCHHH
Confidence 899999999877643
No 96
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.56 E-value=2.8e-14 Score=129.47 Aligned_cols=88 Identities=17% Similarity=0.172 Sum_probs=57.9
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
.....++|+++|.+|||||||+|+|++.. ....++.||.+.....+.+.+.. ..+.+|||||.
T Consensus 16 ~~~~~~ki~~~G~~~~GKssl~~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~ 78 (201)
T 2q3h_A 16 AEGRGVKCVLVGDGAVGKTSLVVSYTTNG--YPTEYIPTAFDNFSAVVSVDGRP---------------VRLQLCDTAGQ 78 (201)
T ss_dssp ----CEEEEEECSTTSSHHHHHHHHHC----------CCSSEEEEEEEEETTEE---------------EEEEEEECCCS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhCC--CCCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCC
Confidence 33456899999999999999999999544 34556666666555555554422 45889999998
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..... .....++++|++++|+|+++
T Consensus 79 ~~~~~-------~~~~~~~~~~~~i~v~d~~~ 103 (201)
T 2q3h_A 79 DEFDK-------LRPLCYTNTDIFLLCFSVVS 103 (201)
T ss_dssp TTCSS-------SGGGGGTTCSEEEEEEETTC
T ss_pred HHHHH-------HhHhhcCCCcEEEEEEECCC
Confidence 65433 22346789999999999753
No 97
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.56 E-value=4.7e-14 Score=127.78 Aligned_cols=152 Identities=18% Similarity=0.167 Sum_probs=95.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.... ..++.|+.......+.+.+.. ..+.+|||||...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~~- 88 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTKRFI--WEYDPTLESTYRHQATIDDEV---------------VSMEILDTAGQED- 88 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHSCCC--SCCCTTCCEEEEEEEEETTEE---------------EEEEEEECCCCCC-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCC--cccCCCCCceEEEEEEECCEE---------------EEEEEEECCCCCc-
Confidence 3589999999999999999999954422 223333322233334444322 4699999999854
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
.......++.+|++++|+|+++... ++ .
T Consensus 89 -------~~~~~~~~~~~d~iilv~D~~~~~s-------------~~---------------~----------------- 116 (196)
T 2atv_A 89 -------TIQREGHMRWGEGFVLVYDITDRGS-------------FE---------------E----------------- 116 (196)
T ss_dssp -------CHHHHHHHHHCSEEEEEEETTCHHH-------------HH---------------T-----------------
T ss_pred -------ccchhhhhccCCEEEEEEECcCHHH-------------HH---------------H-----------------
Confidence 1245667889999999999753211 00 0
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEE
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRV 294 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v 294 (423)
....++.+.. .......|+++++||.| +... .....++..+++...+.+++
T Consensus 117 ---~~~~~~~i~~-----------------------~~~~~~~piilv~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~~ 167 (196)
T 2atv_A 117 ---VLPLKNILDE-----------------------IKKPKNVTLILVGNKAD--LDHS-RQVSTEEGEKLATELACAFY 167 (196)
T ss_dssp ---HHHHHHHHHH-----------------------HHTTSCCCEEEEEECGG--GGGG-CCSCHHHHHHHHHHHTSEEE
T ss_pred ---HHHHHHHHHH-----------------------hhCCCCCcEEEEEECcc--cccc-cccCHHHHHHHHHHhCCeEE
Confidence 0000111110 01124679999999995 3322 23345667777777788999
Q ss_pred EechhhhH-hhc
Q 014539 295 TISAQVEA-ELT 305 (423)
Q Consensus 295 ~~Sa~~e~-~i~ 305 (423)
++||+.+. ++.
T Consensus 168 ~~Sa~~g~~gi~ 179 (196)
T 2atv_A 168 ECSACTGEGNIT 179 (196)
T ss_dssp ECCTTTCTTCHH
T ss_pred EECCCcCCcCHH
Confidence 99999876 663
No 98
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.56 E-value=7.4e-14 Score=131.23 Aligned_cols=90 Identities=18% Similarity=0.129 Sum_probs=62.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCC--CccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP--FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p--~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..++|+|+|.||||||||+|+|+|... ..+..| ++|.++....+.+.+ ..+.||||||+.
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~~~-~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~liDTpG~~ 89 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGRKV-FHSGTAAKSITKKCEKRSSSWKE-----------------TELVVVDTPGIF 89 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTSCC-SCC-------CCSCEEEEEEETT-----------------EEEEEEECCSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHcCCCc-CccCCCCCceeeeEEEEEEEeCC-----------------ceEEEEECCCcc
Confidence 458999999999999999999995544 555666 789888888887765 469999999997
Q ss_pred CCCCcccchhhHH----hhhhhhcceEEEEEecc
Q 014539 133 KGASQGEGLGNKF----LSHIREVDSILQVVRCF 162 (423)
Q Consensus 133 ~~~~~~~~l~~~~----l~~ir~aD~il~Vvd~~ 162 (423)
........+...+ ....+.+|++|+|+|+.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~ 123 (239)
T 3lxx_A 90 DTEVPNAETSKEIIRCILLTSPGPHALLLVVPLG 123 (239)
T ss_dssp -----CHHHHHHHHHHHHHTTTCCSEEEEEEETT
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCC
Confidence 6554333333333 34456679999999974
No 99
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.56 E-value=7.3e-14 Score=136.85 Aligned_cols=90 Identities=13% Similarity=0.060 Sum_probs=69.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.+||+++|.||||||||+|+|+++....+++.|++|++...+.+.+.+ ..++.+|||||.....
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~~----------------~~~l~i~Dt~G~~~~~ 66 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFLG----------------NMTLNLWDCGGQDVFM 66 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEETT----------------TEEEEEEEECCSHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeCC----------------ceEEEEEECCCcHHHh
Confidence 479999999999999999999966667778899999999988877633 2569999999984320
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ..........++++|++++|+|+++
T Consensus 67 ~--~~~~~~~~~~~~~ad~vi~V~D~t~ 92 (307)
T 3r7w_A 67 E--NYFTKQKDHIFQMVQVLIHVFDVES 92 (307)
T ss_dssp H--HHHTTTHHHHHTTCSEEEEEEETTC
T ss_pred h--hhhhhHHHHHhccCCEEEEEEECCC
Confidence 0 0001234566789999999999864
No 100
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.56 E-value=4.5e-14 Score=126.67 Aligned_cols=88 Identities=24% Similarity=0.257 Sum_probs=62.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++......++.+++|.+....... .++.+|||||+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~t~~~~~~~~~--------------------~~~~i~Dt~G~~~~ 81 (195)
T 3pqc_A 22 LKGEVAFVGRSNVGKSSLLNALFNRKIAFVSKTPGKTRSINFYLVN--------------------SKYYFVDLPGYGYA 81 (195)
T ss_dssp TTCEEEEEEBTTSSHHHHHHHHHTSCCSCCCSSCCCCCCEEEEEET--------------------TTEEEEECCCBSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCccccccCCCCCccCeEEEEEC--------------------CcEEEEECCCCccc
Confidence 4579999999999999999999977767778888888776554331 34889999997543
Q ss_pred CCcc---c---chhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQG---E---GLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~---~---~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.... + .+...++.....+|++++|+|+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~ 115 (195)
T 3pqc_A 82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGR 115 (195)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETT
T ss_pred cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCC
Confidence 2211 1 11123334444559999999975
No 101
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.55 E-value=5.7e-14 Score=126.89 Aligned_cols=152 Identities=16% Similarity=0.136 Sum_probs=96.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. . ...+..|+.......+.+.+.. ..+.+|||||....
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 84 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGE-I-PTAYVPTVFENFSHVMKYKNEE---------------FILHLWDTAGQEEY 84 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSC-C-CSSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCSGGG
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCC-C-CCccCCeeeeeeEEEEEECCEE---------------EEEEEEECCCcHHH
Confidence 34899999999999999999999544 2 2344444444434444444422 45799999997433
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
. ......++++|++++|+|+++... +..+ ..
T Consensus 85 ~-------~~~~~~~~~~d~~i~v~d~~~~~s-------------~~~~------------~~----------------- 115 (194)
T 3reg_A 85 D-------RLRPLSYADSDVVLLCFAVNNRTS-------------FDNI------------ST----------------- 115 (194)
T ss_dssp T-------TTGGGGCTTCSEEEEEEETTCHHH-------------HHHH------------HH-----------------
T ss_pred H-------HHhHhhccCCcEEEEEEECCCHHH-------------HHHH------------HH-----------------
Confidence 2 234556889999999999753211 0000 00
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCC-CCCcchHHHHHHHhhcCCc-
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADP-GSNPHVNEVMNLASDLQSG- 292 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~-~~~~~~~~i~~~~~~~~~~- 292 (423)
.++..+ +. .....|+++++||.| +... ......+++.+++...+..
T Consensus 116 -----~~~~~~-----------------------~~--~~~~~p~ilv~nK~D--l~~~~~~~~~~~~~~~~~~~~~~~~ 163 (194)
T 3reg_A 116 -----KWEPEI-----------------------KH--YIDTAKTVLVGLKVD--LRKDGSDDVTKQEGDDLCQKLGCVA 163 (194)
T ss_dssp -----THHHHH-----------------------HH--HCTTSEEEEEEECGG--GCCTTTTCCCHHHHHHHHHHHTCSC
T ss_pred -----HHHHHH-----------------------HH--hCCCCCEEEEEEChh--hccCCCCcccHHHHHHHHHhcCCCE
Confidence 000000 00 013579999999995 4321 1234567777888777877
Q ss_pred EEEechhhhHhh
Q 014539 293 RVTISAQVEAEL 304 (423)
Q Consensus 293 ~v~~Sa~~e~~i 304 (423)
++++||+.+.++
T Consensus 164 ~~~~Sa~~~~gi 175 (194)
T 3reg_A 164 YIEASSVAKIGL 175 (194)
T ss_dssp EEECBTTTTBSH
T ss_pred EEEeecCCCCCH
Confidence 999999987665
No 102
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.55 E-value=3.9e-14 Score=128.72 Aligned_cols=86 Identities=20% Similarity=0.137 Sum_probs=59.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|++||.||||||||+|+++|.....++.++.++.+.....+.+++.. .++.+|||+|....
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~~~Dt~~~~~~- 69 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE- 69 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEE---------------EEEEEECCCCC----
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeE---------------EEEEEEEeccCcch-
Confidence 37999999999999999999997655556667777777666666665532 45789999997431
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
...+ ....++.+|++++|+|++
T Consensus 70 --~~~~---~~~~~~~~~~~i~v~dv~ 91 (192)
T 2cjw_A 70 --NEWL---HDHCMQVGDAYLIVYSIT 91 (192)
T ss_dssp ---CTT---GGGHHHHCSEEEEEEETT
T ss_pred --hhhH---HHhhcccCCEEEEEEECC
Confidence 1111 134567899999999975
No 103
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=2.4e-14 Score=132.95 Aligned_cols=87 Identities=17% Similarity=0.077 Sum_probs=59.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..+||+|||.||||||||+|++++.....++.+|.++.+.....+.+++.. .++.+|||+|....
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~---------------~~l~~~Dt~g~~~~ 100 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGES---------------ATIILLDMWENKGE 100 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEE---------------EEEEEECCTTTTHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCee---------------eEEEEeecCCCcch
Confidence 348999999999999999999996555555666767666666666665532 45889999996310
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
........++.+|++++|+|+.
T Consensus 101 ------~~~l~~~~~~~a~~~ilVydvt 122 (211)
T 2g3y_A 101 ------NEWLHDHCMQVGDAYLIVYSIT 122 (211)
T ss_dssp ------HHHHHHCCCCCCSEEEEEEETT
T ss_pred ------hhhHHHHHHhhCCEEEEEEECC
Confidence 0111223467899999999975
No 104
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.55 E-value=4.2e-14 Score=130.14 Aligned_cols=154 Identities=14% Similarity=0.078 Sum_probs=89.3
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|++..... ...+..+...........+. ....+.+|||||...
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~--------------~~~~~~l~Dt~G~~~ 73 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLDGRFEK-NYNATVGAVNHPVTFLDDQG--------------NVIKFNVWDTAGQEK 73 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTTCSTTC-EEETTTTEEEEEEEEEBTTS--------------CEEEEEEEEECSGGG
T ss_pred cCccEEEEECCCCCCHHHHHHHHhcCCCCC-CCCCccceeeEEEEEEeCCC--------------cEEEEEEEecCCchh
Confidence 345899999999999999999999544221 11111111111111111110 014589999999854
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
... .....++++|++++|+|+++... . +.
T Consensus 74 ~~~-------~~~~~~~~~d~~i~v~d~~~~~s----------------~------------~~---------------- 102 (218)
T 4djt_A 74 KAV-------LKDVYYIGASGAILFFDVTSRIT----------------C------------QN---------------- 102 (218)
T ss_dssp TSC-------CCHHHHTTCSEEEEEEETTCHHH----------------H------------HT----------------
T ss_pred hch-------HHHHHhhcCCEEEEEEeCCCHHH----------------H------------HH----------------
Confidence 332 22345788999999999753210 0 00
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
....+..+.... ....|+++++||.| +... .....+.+.+++...+.++
T Consensus 103 ----~~~~~~~~~~~~------------------------~~~~piilv~nK~D--l~~~-~~~~~~~~~~~~~~~~~~~ 151 (218)
T 4djt_A 103 ----LARWVKEFQAVV------------------------GNEAPIVVCANKID--IKNR-QKISKKLVMEVLKGKNYEY 151 (218)
T ss_dssp ----HHHHHHHHHHHH------------------------CSSSCEEEEEECTT--CC-----CCHHHHHHHTTTCCCEE
T ss_pred ----HHHHHHHHHHhc------------------------CCCCCEEEEEECCC--Cccc-cccCHHHHHHHHHHcCCcE
Confidence 000111111000 13579999999995 4332 2334566677777788899
Q ss_pred EEechhhhHhh
Q 014539 294 VTISAQVEAEL 304 (423)
Q Consensus 294 v~~Sa~~e~~i 304 (423)
+++||+.+.++
T Consensus 152 ~~~Sa~~g~gv 162 (218)
T 4djt_A 152 FEISAKTAHNF 162 (218)
T ss_dssp EEEBTTTTBTT
T ss_pred EEEecCCCCCH
Confidence 99999987655
No 105
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.55 E-value=1.5e-13 Score=123.73 Aligned_cols=83 Identities=19% Similarity=0.220 Sum_probs=60.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++....... ...|.......+.+.+ ..+.+|||||....
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~ 80 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN--ILPTIGFSIEKFKSSS-----------------LSFTVFDMSGQGRY 80 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS--CCCCSSEEEEEEECSS-----------------CEEEEEEECCSTTT
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC--cCCccceeEEEEEECC-----------------EEEEEEECCCCHHH
Confidence 3589999999999999999999955422222 2345566666666554 56999999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ......++++|++++|+|+++
T Consensus 81 ~-------~~~~~~~~~~d~ii~v~d~~~ 102 (190)
T 2h57_A 81 R-------NLWEHYYKEGQAIIFVIDSSD 102 (190)
T ss_dssp G-------GGGGGGGGGCSEEEEEEETTC
T ss_pred H-------HHHHHHHhcCCEEEEEEECCC
Confidence 2 234567899999999999753
No 106
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.55 E-value=1.1e-15 Score=139.17 Aligned_cols=85 Identities=15% Similarity=0.171 Sum_probs=63.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+ .........|++|.+.....+.+.+.. ..+.||||||.....
T Consensus 33 ~~ki~vvG~~~~GKSsli~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 96 (199)
T 3l0i_B 33 LFKLLLIGDSGVGKSCLLLRFA-DDTYTESYISTIGVDFKIRTIELDGKT---------------IKLQIWDTAGQERFR 96 (199)
T ss_dssp EEEEEEECCTTSCCTTTTTSSB-CCCCCCHHHHHHCCSEEEEEEEETTEE---------------EEEEEECCTTCTTCC
T ss_pred ceEEEEECCCCCCHHHHHHHHh-cCCCCCCcCCcccceEEEEEEEECCEE---------------EEEEEEECCCcHhHH
Confidence 4899999999999999999999 454555556777777777777766532 469999999975443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 97 ~-------~~~~~~~~~d~~i~v~d~~~ 117 (199)
T 3l0i_B 97 T-------ITSSYYRGAHGIIVVYDVTD 117 (199)
T ss_dssp C-------CSCC--CCCSEEEECC-CCC
T ss_pred H-------HHHHHhhcCCEEEEEEECCC
Confidence 3 23456788999999999754
No 107
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.54 E-value=1.1e-13 Score=121.38 Aligned_cols=83 Identities=23% Similarity=0.331 Sum_probs=59.5
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|+++|.+|||||||+|+|+++... ...| |.......+.+.+ ..+.+|||||..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~ 62 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQVGEVV--TTIP--TIGFNVETVTYKN-----------------LKFQVWDLGGLT 62 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHHSSCC--CCCC--CSSEEEEEEEETT-----------------EEEEEEEECCCG
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhcCCCC--CcCC--cCccceEEEEECC-----------------EEEEEEECCCCh
Confidence 345689999999999999999999955432 2222 4444444555443 569999999984
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .......++.+|++++|+|+++
T Consensus 63 ~~-------~~~~~~~~~~~d~ii~v~d~~~ 86 (171)
T 1upt_A 63 SI-------RPYWRCYYSNTDAVIYVVDSCD 86 (171)
T ss_dssp GG-------GGGGGGGCTTCSEEEEEEETTC
T ss_pred hh-------hHHHHHHhccCCEEEEEEECCC
Confidence 32 2234566789999999999864
No 108
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.54 E-value=2e-13 Score=122.94 Aligned_cols=89 Identities=24% Similarity=0.288 Sum_probs=53.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+++|.+|||||||+|+|++.. ...+++.|++|.+...... + .++.+|||||+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~------------------~~~~l~Dt~G~~~ 81 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYII--N------------------DELHFVDVPGYGF 81 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEE--T------------------TTEEEEECCCBCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEE--C------------------CcEEEEECCCCCc
Confidence 45899999999999999999999664 4567788888877654433 1 2499999999754
Q ss_pred CCCc---ccchhhHHhhhhhhc---ceEEEEEeccC
Q 014539 134 GASQ---GEGLGNKFLSHIREV---DSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~---~~~l~~~~l~~ir~a---D~il~Vvd~~~ 163 (423)
.... .+.+.......++.+ |++++|+|+++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~ 117 (195)
T 1svi_A 82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRH 117 (195)
T ss_dssp CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTS
T ss_pred cccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCC
Confidence 3321 111222223344444 99999999853
No 109
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.53 E-value=1.8e-13 Score=123.47 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=55.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccce-EEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPN-VGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~-~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+++|.+|||||||+|+|++... .....| |.... ...+...+. ...+.||||||...
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~-~~~~~~--t~~~~~~~~~~~~~~---------------~~~~~l~Dt~G~~~ 68 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTF-RDTYIP--TIEDTYRQVISCDKS---------------VCTLQITDTTGSHQ 68 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCC-CCTTSC--CCCEEEEEEEEETTE---------------EEEEEEEECCGGGS
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCC-CCcccC--ccccceeEEEEECCE---------------EEEEEEEeCCChHH
Confidence 458999999999999999999995432 211122 22221 122222221 14689999999743
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .......++.+|++++|+|+++
T Consensus 69 ~-------~~~~~~~~~~~d~~i~v~d~~~ 91 (199)
T 2gf0_A 69 F-------PAMQRLSISKGHAFILVFSVTS 91 (199)
T ss_dssp C-------HHHHHHHHHHCSEEEEEEETTC
T ss_pred h-------HHHHHHhhccCCEEEEEEECcC
Confidence 2 2344566789999999999753
No 110
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.53 E-value=1e-13 Score=126.34 Aligned_cols=80 Identities=19% Similarity=0.381 Sum_probs=55.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||+|+|+++.... + ..|..++.+.+.+++ .++.+|||||.....
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~---~-~~t~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~~ 83 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKDDRLGQ---H-VPTLHPTSEELTIAG-----------------MTFTTFDLGGHIQAR 83 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC----------CCCCCSCEEEEETT-----------------EEEEEEEECC----C
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCCCc---c-CCCCCceeEEEEECC-----------------EEEEEEECCCcHhhH
Confidence 4799999999999999999999554322 2 234555556666554 569999999985443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .+...++.+|++++|+|+++
T Consensus 84 ~-------~~~~~~~~~d~~i~v~D~~~ 104 (198)
T 1f6b_A 84 R-------VWKNYLPAINGIVFLVDCAD 104 (198)
T ss_dssp C-------GGGGGGGGCSEEEEEEETTC
T ss_pred H-------HHHHHHhcCCEEEEEEECCC
Confidence 3 34456789999999999864
No 111
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.53 E-value=4.4e-14 Score=125.03 Aligned_cols=85 Identities=21% Similarity=0.184 Sum_probs=65.5
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|+ .........|++|.+.....+.+++ ..+.+|||||...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~ 67 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIR-HSKVTEQEAGGITQHIGAYQVTVND-----------------KKITFLDTPGHEA 67 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHH-TTCSSCSSCCSSSTTCCCCEEEETT-----------------EEEEESCCCSSSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh-CCccccCCCCceeEeeeEEEEEeCC-----------------ceEEEEECCCCHH
Confidence 345899999999999999999999 4445566678888877766666655 4588999999865
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.... ....++.+|++++|+|+.+
T Consensus 68 ~~~~-------~~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 68 FTTM-------RARGAQVTDIVILVVAADD 90 (178)
T ss_dssp SSCS-------CCSSCCCCCEEEEEEETTC
T ss_pred HHHH-------HHHHHhhCCEEEEEEECCC
Confidence 4331 2355788999999999753
No 112
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.52 E-value=2.2e-13 Score=122.80 Aligned_cols=84 Identities=17% Similarity=0.119 Sum_probs=61.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ....++.|+.+.....+.+.+.. ..+.+|||||.....
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~D~~G~~~~~ 80 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYANDA--FPEEYVPTVFDHYAVSVTVGGKQ---------------YLLGLYDTAGQEDYD 80 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS--CCCSCCCSSCCCEEEEEESSSCE---------------EEEEEECCCCSSSST
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC--CCCCCCCcccceeEEEEEECCEE---------------EEEEEEECCCCcchh
Confidence 3799999999999999999999543 23455556655555555555422 468999999986543
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 81 ~-------~~~~~~~~~d~~i~v~d~~~ 101 (194)
T 2atx_A 81 R-------LRPLSYPMTDVFLICFSVVN 101 (194)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTC
T ss_pred H-------HHHHhcCCCCEEEEEEECCC
Confidence 2 23456789999999999753
No 113
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.52 E-value=2.4e-13 Score=122.66 Aligned_cols=84 Identities=21% Similarity=0.259 Sum_probs=56.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|++.....+...| |.......+...+ ..+.+|||||...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~ 75 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITA--TVGYNVETFEKGR-----------------VAFTVFDMGGAKK 75 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCCC----CCCC--CSSEEEEEEEETT-----------------EEEEEEEECCSGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcCCCccccccc--ccceeEEEEEeCC-----------------EEEEEEECCCCHh
Confidence 34579999999999999999999955433322222 3334444443322 5699999999843
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. ......++++|++++|+|+++
T Consensus 76 ~~-------~~~~~~~~~~d~ii~v~D~~~ 98 (199)
T 4bas_A 76 FR-------GLWETYYDNIDAVIFVVDSSD 98 (199)
T ss_dssp GG-------GGGGGGCTTCSEEEEEEETTC
T ss_pred HH-------HHHHHHHhcCCEEEEEEECCc
Confidence 32 234466889999999999864
No 114
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.52 E-value=1.9e-14 Score=138.51 Aligned_cols=94 Identities=20% Similarity=0.277 Sum_probs=54.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCC------CccccceEEEEecCCccchhhccccccccccCceEEEEec
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDI 128 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDt 128 (423)
..++|+++|.||+|||||+|+|++...... ++| ..|.........+.... ....+.+|||
T Consensus 7 ~~~~I~vvG~~g~GKSTLin~L~~~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~-------------~~~~l~liDT 72 (274)
T 3t5d_A 7 FEFTLMVVGESGLGKSTLINSLFLTDLYSP-EYPGPSHRIKKTVQVEQSKVLIKEGG-------------VQLLLTIVDT 72 (274)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHSSSCC----------------CCCEEEEEEECC---------------CCEEEEEEEC
T ss_pred cEEEEEEECCCCCCHHHHHHHHhCCCcccc-CCCCcccccCCceEEEEEEEEEecCC-------------eEEEEEEEEC
Confidence 347999999999999999999996554433 332 34444444433332110 1136999999
Q ss_pred CCCcCCCCccc-------chhhHHhhhhhh-------------cceEEEEEecc
Q 014539 129 AGLVKGASQGE-------GLGNKFLSHIRE-------------VDSILQVVRCF 162 (423)
Q Consensus 129 pGl~~~~~~~~-------~l~~~~l~~ir~-------------aD~il~Vvd~~ 162 (423)
||+........ .+..+|..++++ +|+++++++.+
T Consensus 73 pG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~ 126 (274)
T 3t5d_A 73 PGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS 126 (274)
T ss_dssp CCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSC
T ss_pred CCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCC
Confidence 99954322111 122334455554 78899998754
No 115
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.52 E-value=1.8e-13 Score=121.80 Aligned_cols=84 Identities=17% Similarity=0.126 Sum_probs=58.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|+++.. ...+..|+.+.....+.+.+.. ..+.+|||||.....
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 67 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGQEDYD 67 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CSSCCCCSCCEEEEEEEETTEE---------------EEEEEECCCCSGGGT
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCC--CCCcCCcccceeEEEEEECCEE---------------EEEEEEECCCCHhHH
Confidence 37999999999999999999995432 2344445544444444444422 468899999985432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++.+|++++|+|+++
T Consensus 68 ~-------~~~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 68 R-------LRPLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp T-------TGGGGCTTCSEEEEEEETTC
T ss_pred H-------HHHHhccCCcEEEEEEECCC
Confidence 2 23346789999999999753
No 116
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.51 E-value=6.7e-14 Score=129.30 Aligned_cols=86 Identities=12% Similarity=0.128 Sum_probs=57.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.+|||||||+|+|+++. .. ..+..|+.+.....+.+.+.. ..+.+|||||...
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~ 87 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDC-YP-ETYVPTVFENYTACLETEEQR---------------VELSLWDTSGSPY 87 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSC-CC-SSCCCCSEEEEEEEEEC--CE---------------EEEEEEEECCSGG
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCC-CC-CCcCCeeeeeEEEEEEECCEE---------------EEEEEEECCCCHh
Confidence 345899999999999999999999544 22 333333333333334444322 4689999999854
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... .....+++||++++|+|+++
T Consensus 88 ~~~-------~~~~~~~~~d~~i~v~d~~~ 110 (214)
T 3q3j_B 88 YDN-------VRPLCYSDSDAVLLCFDISR 110 (214)
T ss_dssp GTT-------TGGGGCTTCSEEEEEEETTC
T ss_pred HHH-------HHHHHcCCCeEEEEEEECcC
Confidence 332 33456789999999999753
No 117
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.51 E-value=4.6e-13 Score=116.78 Aligned_cols=79 Identities=24% Similarity=0.318 Sum_probs=57.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|+++... ...| |+......+...+ ..+.+|||||...
T Consensus 1 ~ki~~~G~~~~GKssl~~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~--- 56 (164)
T 1r8s_A 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDK--- 56 (164)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHCSS--CCCC--CSSCCEEEEECSS-----------------CEEEEEECCCCGG---
T ss_pred CEEEEECCCCCCHHHHHHHHHcCCcC--cccC--cCceeEEEEEECC-----------------EEEEEEEcCCChh---
Confidence 48999999999999999999965432 2333 4455555555433 5699999999842
Q ss_pred cccchhhHHhhhhhhcceEEEEEeccC
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++++|++++|+|+++
T Consensus 57 ----~~~~~~~~~~~~d~~i~v~d~~~ 79 (164)
T 1r8s_A 57 ----IRPLWRHYFQNTQGLIFVVDSND 79 (164)
T ss_dssp ----GHHHHHHHTTTCSEEEEEEETTC
T ss_pred ----hHHHHHHHhccCCEEEEEEECCC
Confidence 23345567899999999999854
No 118
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.51 E-value=2.3e-13 Score=121.77 Aligned_cols=81 Identities=20% Similarity=0.252 Sum_probs=58.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|+++. ..... .|.......+.+++ ..+.+|||||...
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~--~~~~~--~t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~- 74 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED--VDTIS--PTLGFNIKTLEHRG-----------------FKLNIWDVGGQKS- 74 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC--CSSCC--CCSSEEEEEEEETT-----------------EEEEEEEECCSHH-
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC--CCccc--ccCccceEEEEECC-----------------EEEEEEECCCCHh-
Confidence 45899999999999999999999654 22222 24444455555543 5699999999843
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
........++++|++++|+|+++
T Consensus 75 ------~~~~~~~~~~~~d~ii~v~d~~~ 97 (186)
T 1ksh_A 75 ------LRSYWRNYFESTDGLIWVVDSAD 97 (186)
T ss_dssp ------HHTTGGGGCTTCSEEEEEEETTC
T ss_pred ------HHHHHHHHhcCCCEEEEEEECcC
Confidence 22234566889999999999864
No 119
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.51 E-value=2.5e-13 Score=122.89 Aligned_cols=80 Identities=21% Similarity=0.281 Sum_probs=59.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
..+|+++|.||||||||+|+|+++.... ...|..+..+.+.+++ ..+.+|||||.....
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~~~~----~~~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~~ 81 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDRLAT----LQPTWHPTSEELAIGN-----------------IKFTTFDLGGHIQAR 81 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSCCCC----CCCCCSCEEEEEEETT-----------------EEEEEEECCCSGGGT
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCc----cccCCCCCeEEEEECC-----------------EEEEEEECCCCHHHH
Confidence 4799999999999999999999655332 2346666667676655 569999999985433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 82 ~-------~~~~~~~~~d~~i~v~d~~~ 102 (190)
T 1m2o_B 82 R-------LWKDYFPEVNGIVFLVDAAD 102 (190)
T ss_dssp T-------SGGGGCTTCCEEEEEEETTC
T ss_pred H-------HHHHHHhcCCEEEEEEECCC
Confidence 2 23456789999999999864
No 120
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=2.3e-13 Score=122.19 Aligned_cols=81 Identities=25% Similarity=0.306 Sum_probs=55.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|+++..... .| |.......+.+.+ ..+.+|||||....
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~--t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 73 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHT--SP--TIGSNVEEIVINN-----------------TRFLMWDIGGQESL 73 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEE--EC--CSCSSCEEEEETT-----------------EEEEEEECCC----
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcC--cC--CCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 458999999999999999999995543322 22 3334444444443 56999999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++++|++++|+|+++
T Consensus 74 ~~-------~~~~~~~~~d~ii~v~d~~~ 95 (187)
T 1zj6_A 74 RS-------SWNTYYTNTEFVIVVVDSTD 95 (187)
T ss_dssp CG-------GGHHHHTTCCEEEEEEETTC
T ss_pred HH-------HHHHHhcCCCEEEEEEeCCC
Confidence 32 33456789999999999864
No 121
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.51 E-value=2.1e-13 Score=124.82 Aligned_cols=84 Identities=17% Similarity=0.117 Sum_probs=60.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.||||||||+|+|+++. . ...++.|+.+.....+.+.+.. ..+.+|||||.....
T Consensus 9 ~~ki~i~G~~~~GKTsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~ 71 (212)
T 2j0v_A 9 FIKCVTVGDGAVGKTCMLICYTSNK-F-PTDYIPTVFDNFSANVAVDGQI---------------VNLGLWDTAGQEDYS 71 (212)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC-C-CSSCCCSSCCCEEEEEECSSCE---------------EEEEEECCCCCCCCC
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-C-CccCCCccceeEEEEEEECCEE---------------EEEEEEECCCcHHHH
Confidence 4799999999999999999999543 2 3445556555555555554422 469999999986543
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 72 ~-------~~~~~~~~~d~~ilv~d~~~ 92 (212)
T 2j0v_A 72 R-------LRPLSYRGADIFVLAFSLIS 92 (212)
T ss_dssp C---------CGGGTTCSEEEEEEETTC
T ss_pred H-------HHHhhccCCCEEEEEEECCC
Confidence 3 23456889999999999753
No 122
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.50 E-value=2.7e-13 Score=128.91 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=72.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCC-ccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF-CTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~-tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
..++|+|+|.||||||||+|+|++...+..+..|. +|++...+.+...+ .++.||||||+..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~i~iiDTpG~~~ 83 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN-----------------REIVIIDTPDMFS 83 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT-----------------EEEEEEECCGGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC-----------------CEEEEEECcCCCC
Confidence 34899999999999999999999766666666676 88888888877655 5699999999976
Q ss_pred CCCcccch----hhHHhhhhhhcceEEEEEeccC
Q 014539 134 GASQGEGL----GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 134 ~~~~~~~l----~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
........ ...+...++.+|++++|+|+..
T Consensus 84 ~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~ 117 (260)
T 2xtp_A 84 WKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR 117 (260)
T ss_dssp SSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC
Confidence 55432222 3344557789999999999864
No 123
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.50 E-value=1.4e-13 Score=125.92 Aligned_cols=85 Identities=18% Similarity=0.155 Sum_probs=60.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|+++.. ...++.|+.+.....+.+.+.. ..+.+|||||....
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 91 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLEDY 91 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHSCC--CC-CCCCSEEEEEEEEECC-CE---------------EEEEEEEECCSGGG
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhCCC--CCCcCCeecceeEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 458999999999999999999995432 3445566655555555555432 45779999998433
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ......++++|++++|+|+++
T Consensus 92 ~-------~~~~~~~~~~d~~i~v~d~~~ 113 (204)
T 4gzl_A 92 D-------RLRPLSYPQTDVFLICFSLVS 113 (204)
T ss_dssp T-------TTGGGGCTTCSEEEEEEETTC
T ss_pred H-------HHHHHHhccCCEEEEEEECCC
Confidence 2 234457889999999999753
No 124
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.50 E-value=5.1e-13 Score=120.31 Aligned_cols=148 Identities=15% Similarity=0.111 Sum_probs=92.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|+++.. .....| |.......+.+.+.. ..+.+|||||....
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~~~-~~~~~~--t~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 80 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTGTY-VQEESP--EGGRFKKEIVVDGQS---------------YLLLIRDEGGPPEL 80 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHSSC-CCCCCT--TCEEEEEEEEETTEE---------------EEEEEEECSSSCCH
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCCC-CCCcCC--CcceEEEEEEECCEE---------------EEEEEEECCCChhh
Confidence 348999999999999999999995432 222222 333333445555422 45889999998321
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhhh
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSKL 214 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~~ 214 (423)
. .++.+|++++|+|+++... ++ ...
T Consensus 81 -----------~-~~~~~~~~i~v~d~~~~~s-------------~~---------------~~~--------------- 105 (184)
T 3ihw_A 81 -----------Q-FAAWVDAVVFVFSLEDEIS-------------FQ---------------TVY--------------- 105 (184)
T ss_dssp -----------H-HHHHCSEEEEEEETTCHHH-------------HH---------------HHH---------------
T ss_pred -----------h-eecCCCEEEEEEECcCHHH-------------HH---------------HHH---------------
Confidence 1 6788999999999753210 00 000
Q ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCC-CCCCcchHHHHHHHhhcC-Cc
Q 014539 215 KDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLAD-PGSNPHVNEVMNLASDLQ-SG 292 (423)
Q Consensus 215 ~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~-~~~~~~~~~i~~~~~~~~-~~ 292 (423)
..+..+ .. .......|+++++||.| +.+ .......+++.+++...+ .+
T Consensus 106 -----~~~~~i----~~-------------------~~~~~~~piilv~nK~D--l~~~~~~~v~~~~~~~~~~~~~~~~ 155 (184)
T 3ihw_A 106 -----NYFLRL----CS-------------------FRNASEVPMVLVGTQDA--ISAANPRVIDDSRARKLSTDLKRCT 155 (184)
T ss_dssp -----HHHHHH----HT-------------------TSCGGGSCEEEEEECTT--CBTTBCCCSCHHHHHHHHHHTTTCE
T ss_pred -----HHHHHH----HH-------------------hcCCCCCCEEEEEECcc--cccccccccCHHHHHHHHHHcCCCe
Confidence 011111 00 00024679999999995 321 112345667778887775 78
Q ss_pred EEEechhhhHhhc
Q 014539 293 RVTISAQVEAELT 305 (423)
Q Consensus 293 ~v~~Sa~~e~~i~ 305 (423)
++.+||+.+.++.
T Consensus 156 ~~e~Sa~~~~gv~ 168 (184)
T 3ihw_A 156 YYETCATYGLNVE 168 (184)
T ss_dssp EEEEBTTTTBTHH
T ss_pred EEEecCCCCCCHH
Confidence 9999999887664
No 125
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.50 E-value=1.4e-13 Score=123.09 Aligned_cols=81 Identities=20% Similarity=0.217 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.......+.++ .....+.+.+ ..+.+|||||....
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~t~~----~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 78 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIG----SNVEEIVINN-----------------TRFLMWDIGGQESL 78 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEECCSS----SSCEEEEETT-----------------EEEEEEEESSSGGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccCCcCc----eeeEEEEECC-----------------EEEEEEECCCCHhH
Confidence 45899999999999999999999655433333222 2233444433 56999999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ......++++|++++|+|+++
T Consensus 79 ~-------~~~~~~~~~~d~ii~v~D~~~ 100 (181)
T 2h17_A 79 R-------SSWNTYYTNTEFVIVVVDSTD 100 (181)
T ss_dssp T-------CGGGGGGTTCCEEEEEEETTC
T ss_pred H-------HHHHHHhccCCEEEEEEECCC
Confidence 2 234567889999999999864
No 126
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.49 E-value=2.1e-13 Score=124.20 Aligned_cols=83 Identities=17% Similarity=0.099 Sum_probs=56.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. ......|.++.+. ...+.+++.. ..+.+|||||.....
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~-~~~~~~~t~~~~~-~~~~~~~~~~---------------~~l~i~Dt~G~~~~~ 87 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKDQ-FPEVYVPTVFENY-IADIEVDGKQ---------------VELALWDTAGQEDYD 87 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSS-CCSSCCCSSCCCC-EEEEEETTEE---------------EEEEEECCCCSGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCc-CCcccCCcccceE-EEEEEECCEE---------------EEEEEEECCCchhHH
Confidence 3799999999999999999999544 3323334433332 2334444322 468999999974332
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .....++.+|++++|+|+.
T Consensus 88 ~-------~~~~~~~~~d~~i~v~d~~ 107 (201)
T 2gco_A 88 R-------LRPLSYPDTDVILMCFSID 107 (201)
T ss_dssp T-------TGGGGCTTCSEEEEEEETT
T ss_pred H-------HHHHhcCCCCEEEEEEECC
Confidence 2 2345678999999999975
No 127
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.49 E-value=1.3e-13 Score=127.10 Aligned_cols=85 Identities=14% Similarity=0.118 Sum_probs=47.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. . ...++.|+.+.....+.+.+.. ..+.+|||||....
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~l~l~Dt~G~~~~ 95 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGA-F-PESYTPTVFERYMVNLQVKGKP---------------VHLHIWDTAGQDDY 95 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC---------CCCCCEEEEEEEEETTEE---------------EEEEEEEC------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCC-C-CCCCCCccceeEEEEEEECCEE---------------EEEEEEECCCchhh
Confidence 34899999999999999999999543 2 2333444444444444444422 46999999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++++|++++|+|+++
T Consensus 96 ~~-------~~~~~~~~~d~~i~v~d~~~ 117 (214)
T 2j1l_A 96 DR-------LRPLFYPDASVLLLCFDVTS 117 (214)
T ss_dssp ----------------CEEEEEEEEETTC
T ss_pred hH-------HHHHHhccCCEEEEEEECcC
Confidence 22 23445789999999999753
No 128
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.49 E-value=3.2e-13 Score=121.03 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=55.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++.. .. ..+..|+.......+.+.+.. ..+.+|||||....
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~ 68 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDC-FP-ENYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYY 68 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC-CC-SSCCCCSEEEEEEEEECSSCE---------------EEEEEEEECCSGGG
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCC-CC-CCCCCccceeEEEEEEECCEE---------------EEEEEEECCCChhh
Confidence 34799999999999999999999543 22 222222222222333443322 46899999997543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. .....++++|++++|+|++
T Consensus 69 ~~-------~~~~~~~~~~~~i~v~d~~ 89 (184)
T 1m7b_A 69 DN-------VRPLSYPDSDAVLICFDIS 89 (184)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETT
T ss_pred hh-------hHHhhcCCCcEEEEEEECC
Confidence 22 2334678999999999975
No 129
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.49 E-value=7.8e-14 Score=128.87 Aligned_cols=86 Identities=14% Similarity=0.057 Sum_probs=60.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHh-hcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Lt-g~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
...++|+++|.+|||||||+|+++ +.......+.+++|.......+ .+. ...+.+|||||..
T Consensus 13 ~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~---------------~~~~~i~Dt~G~~ 75 (221)
T 3gj0_A 13 QVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHT--NRG---------------PIKFNVWDTAGQE 75 (221)
T ss_dssp CCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEE--TTE---------------EEEEEEEEECSGG
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEE--CCE---------------EEEEEEEeCCChH
Confidence 344899999999999999999954 4334555666777765554443 221 1469999999975
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.... .....++++|++++|+|+++
T Consensus 76 ~~~~-------~~~~~~~~~~~~i~v~d~~~ 99 (221)
T 3gj0_A 76 KFGG-------LRDGYYIQAQCAIIMFDVTS 99 (221)
T ss_dssp GTSC-------CCHHHHTTCCEEEEEEETTC
T ss_pred HHhH-------HHHHHHhcCCEEEEEEECCC
Confidence 4332 23456779999999999753
No 130
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.49 E-value=4.4e-13 Score=120.36 Aligned_cols=81 Identities=20% Similarity=0.323 Sum_probs=58.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|+++... ...| |.......+.+.+ .++.+|||||....
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~--~~~~--t~~~~~~~~~~~~-----------------~~~~~~Dt~G~~~~ 79 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVV--TTVP--TVGVNLETLQYKN-----------------ISFEVWDLGGQTGV 79 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCE--EECS--STTCCEEEEEETT-----------------EEEEEEEECCSSSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCC--CcCC--CCceEEEEEEECC-----------------EEEEEEECCCCHhH
Confidence 3589999999999999999999854432 2333 4445555555543 56999999998654
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++++|++++|+|+++
T Consensus 80 ~~-------~~~~~~~~~d~ii~v~d~~~ 101 (189)
T 2x77_A 80 RP-------YWRCYFSDTDAVIYVVDSTD 101 (189)
T ss_dssp CC-------CCSSSSTTCCEEEEEEETTC
T ss_pred HH-------HHHHHhhcCCEEEEEEeCCC
Confidence 33 12345789999999999864
No 131
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.49 E-value=3e-13 Score=140.65 Aligned_cols=80 Identities=20% Similarity=0.270 Sum_probs=63.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+|||.||||||||+|+|++... +. .+.|++.+.+.+...+ ..+.||||||.....
T Consensus 322 ~~ki~lvG~~nvGKSsLl~~l~~~~~--~~--~~~T~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~~~ 380 (497)
T 3lvq_E 322 EMRILMLGLDAAGKTTILYKLKLGQS--VT--TIPTVGFNVETVTYKN-----------------VKFNVWDVGGQDKIR 380 (497)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSSC--CC--CCCCSSEEEEEEESSS-----------------CEEEEEEECCCGGGS
T ss_pred ceeEEEEcCCCCCHHHHHHHHhcCCC--CC--cCCccceeEEEEEeCC-----------------EEEEEEECCCcHHHH
Confidence 47999999999999999999996552 23 3458888888877655 569999999974432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+..++++||++|+|+|+++
T Consensus 381 -------~~~~~~~~~ad~~i~V~D~~~ 401 (497)
T 3lvq_E 381 -------PLWRHYYTGTQGLIFVVDCAD 401 (497)
T ss_dssp -------GGGGGGGTTCCEEEEEEETTC
T ss_pred -------HHHHHHhccCCEEEEEEECcc
Confidence 245677899999999999864
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.48 E-value=3.2e-14 Score=126.37 Aligned_cols=84 Identities=17% Similarity=0.131 Sum_probs=49.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|++.. . ...++.|+.+.....+.+.+. ...+.+|||||.....
T Consensus 8 ~~ki~v~G~~~~GKssl~~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~~~i~Dt~G~~~~~ 70 (182)
T 3bwd_D 8 FIKCVTVGDGAVGKTCLLISYTSNT-F-PTDYVPTVFDNFSANVVVNGA---------------TVNLGLWDTAGQEDYN 70 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSC-C-C----------CBCCCC----------------------CEEECCCC-CTTT
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCC-C-CCCCCCeeeeeEEEEEEECCE---------------EEEEEEEECCCChhhh
Confidence 4899999999999999999999543 2 233333333222111212211 2457899999985433
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++++|++++|+|+++
T Consensus 71 ~-------~~~~~~~~~d~~i~v~d~~~ 91 (182)
T 3bwd_D 71 R-------LRPLSYRGADVFILAFSLIS 91 (182)
T ss_dssp T-------TGGGGGTTCSEEEEEEETTC
T ss_pred h-------hHHhhccCCCEEEEEEECCC
Confidence 2 33456789999999999753
No 133
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.48 E-value=5.8e-13 Score=119.89 Aligned_cols=82 Identities=20% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.... .... .|.......+...+ ..+.+|||||...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~~~~-~~~~--~t~~~~~~~~~~~~-----------------~~~~l~Dt~G~~~- 79 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASGQFN-EDMI--PTVGFNMRKITKGN-----------------VTIKLWDIGGQPR- 79 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCC-CSCC--CCCSEEEEEEEETT-----------------EEEEEEEECCSHH-
T ss_pred CccEEEEECCCCCCHHHHHHHHHcCCCC-CccC--CCCceeEEEEEeCC-----------------EEEEEEECCCCHh-
Confidence 3589999999999999999999954432 2222 23333333343332 5699999999742
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.......++++|++++|+|+++
T Consensus 80 ------~~~~~~~~~~~~d~ii~v~D~~~ 102 (188)
T 1zd9_A 80 ------FRSMWERYCRGVSAIVYMVDAAD 102 (188)
T ss_dssp ------HHTTHHHHHTTCSEEEEEEETTC
T ss_pred ------HHHHHHHHHccCCEEEEEEECCC
Confidence 22344566799999999999864
No 134
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.48 E-value=4.2e-13 Score=130.90 Aligned_cols=105 Identities=17% Similarity=0.228 Sum_probs=60.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCc-----ceecCCC---Cccccce---------EE-EEecCCccchhh-------
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGK-----AQAANFP---FCTIEPN---------VG-IVAVPDPRLHVL------- 109 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~-----~~vs~~p---~tT~~~~---------~~-~~~~~~~r~~~l------- 109 (423)
..++|+|+|.||||||||+|+|+|... ..++..| .+|+.+. .+ ....++.....+
T Consensus 23 ~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 102 (315)
T 1jwy_B 23 DLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEI 102 (315)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHH
Confidence 347999999999999999999997665 3344555 3333311 00 000111100000
Q ss_pred --------------------ccccccccccCceEEEEecCCCcCCC------CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 110 --------------------SGLSKSQKAVPASVEFVDIAGLVKGA------SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 110 --------------------~~~~~~~~~~~~~i~lvDtpGl~~~~------~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.+++.|. ..++.||||||+.+.. ...+.+...+..+++++|++++|+|+.
T Consensus 103 ~~~~~~~~g~~~~~~~~~~~~~i~~~~---~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~ 178 (315)
T 1jwy_B 103 IRDTDRMTGKNKGISAQPINLKIYSPH---VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPA 178 (315)
T ss_dssp HHHCC--------CCCCCEEEEEEETT---SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEES
T ss_pred HHHHHHhcCCCCCccCccEEEEEecCC---CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEec
Confidence 0012222 2469999999997522 112345567788899999999999974
No 135
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.47 E-value=3.3e-13 Score=121.03 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=57.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|++.......+ |.......+.+++ ..+.+|||||...
T Consensus 15 ~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~----t~g~~~~~~~~~~-----------------~~l~i~Dt~G~~~- 72 (181)
T 1fzq_A 15 QEVRILLLGLDNAGKTTLLKQLASEDISHITP----TQGFNIKSVQSQG-----------------FKLNVWDIGGQRK- 72 (181)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCCSCCEEEEE----ETTEEEEEEEETT-----------------EEEEEEECSSCGG-
T ss_pred CceEEEEECCCCCCHHHHHHHHhcCCCCcccC----cCCeEEEEEEECC-----------------EEEEEEECCCCHH-
Confidence 45899999999999999999999654333222 2222233343333 5699999999742
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+......+++.+|++++|+|+++
T Consensus 73 ------~~~~~~~~~~~~~~~i~v~d~~~ 95 (181)
T 1fzq_A 73 ------IRPYWRSYFENTDILIYVIDSAD 95 (181)
T ss_dssp ------GHHHHHHHHTTCSEEEEEEETTC
T ss_pred ------HHHHHHHHhCCCCEEEEEEECcC
Confidence 33345677899999999999754
No 136
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=6.2e-13 Score=121.68 Aligned_cols=82 Identities=17% Similarity=0.110 Sum_probs=54.1
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
++|+++|.+|||||||+|+|++.... ..+..|+.+.....+.+++.. ..+.+|||||......
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~---------------~~~~i~Dt~G~~~~~~ 88 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKDEFP--EVYVPTVFENYVADIEVDGKQ---------------VELALWDTAGQEDYDR 88 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHSSCC---------CCEEEEEEEETTEE---------------EEEEEEECTTCTTCTT
T ss_pred cEEEEECcCCCCHHHHHHHHhcCCCC--CcCCCcccceEEEEEEECCEE---------------EEEEEEECCCcHHHHH
Confidence 69999999999999999999954432 223333333333334444321 4689999999854432
Q ss_pred cccchhhHHhhhhhhcceEEEEEecc
Q 014539 137 QGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 137 ~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.....++.+|++++|+|+.
T Consensus 89 -------~~~~~~~~~d~~i~v~d~~ 107 (207)
T 2fv8_A 89 -------LRPLSYPDTDVILMCFSVD 107 (207)
T ss_dssp -------TGGGGCTTCCEEEEEEETT
T ss_pred -------HHHhhcCCCCEEEEEEECC
Confidence 2345678999999999975
No 137
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.47 E-value=8.3e-13 Score=119.61 Aligned_cols=81 Identities=21% Similarity=0.230 Sum_probs=55.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|+++... ... .|+......+...+ ..+.+|||||....
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~~~~--~~~--~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 86 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLGEIV--TTI--PTIGFNVETVEYKN-----------------ICFTVWDVGGQDKI 86 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSSCCE--EEE--EETTEEEEEEEETT-----------------EEEEEEECC-----
T ss_pred CccEEEEECCCCCCHHHHHHHHHhCCcc--ccC--CcCceeEEEEEECC-----------------EEEEEEECCCCHhH
Confidence 3489999999999999999999954432 222 25554444454433 56999999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++++|++++|+|+++
T Consensus 87 ~~-------~~~~~~~~~d~iilv~D~~~ 108 (192)
T 2b6h_A 87 RP-------LWRHYFQNTQGLIFVVDSND 108 (192)
T ss_dssp CT-------THHHHHHTCCEEEEEEETTC
T ss_pred HH-------HHHHHhccCCEEEEEEECCC
Confidence 22 34566789999999999854
No 138
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.47 E-value=3.9e-13 Score=119.55 Aligned_cols=81 Identities=20% Similarity=0.233 Sum_probs=55.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|+++...... .|.......+.+++ ..+.+|||||....
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~----~t~~~~~~~~~~~~-----------------~~~~i~Dt~G~~~~ 75 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQIGEVVTTK----PTIGFNVETLSYKN-----------------LKLNVWDLGGQTSI 75 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSEEEEEC----SSTTCCEEEEEETT-----------------EEEEEEEEC----C
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCcCccC----CcCccceEEEEECC-----------------EEEEEEECCCCHhH
Confidence 4589999999999999999999954432222 23334444454443 56999999998654
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++++|++++|+|+++
T Consensus 76 ~~-------~~~~~~~~~d~ii~v~d~~~ 97 (183)
T 1moz_A 76 RP-------YWRCYYADTAAVIFVVDSTD 97 (183)
T ss_dssp CT-------TGGGTTTTEEEEEEEEETTC
T ss_pred HH-------HHHHHhccCCEEEEEEECCC
Confidence 32 33456789999999999864
No 139
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.47 E-value=2.3e-13 Score=141.43 Aligned_cols=86 Identities=19% Similarity=0.197 Sum_probs=63.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCc------------------------------ceecCCCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGK------------------------------AQAANFPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~------------------------------~~vs~~p~tT~~~~~~~~~~~~~ 104 (423)
..++|+++|.+|+|||||+|+|++... ......+++|++.....+..++
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~- 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSS-
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCC-
Confidence 348999999999999999999985421 1122334667776666665544
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
.++.||||||.. .+.......++.||++++|+|+.+.
T Consensus 111 ----------------~~~~iiDTPG~~-------~f~~~~~~~~~~aD~~llVvDa~~g 147 (483)
T 3p26_A 111 ----------------ANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCSTN 147 (483)
T ss_dssp ----------------CEEEEECCCCCG-------GGHHHHHHHHTTCSEEEEEEECCC-
T ss_pred ----------------ceEEEEECCCcH-------HHHHHHHHhhhhCCEEEEEEECCCC
Confidence 579999999983 3456778889999999999998653
No 140
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.46 E-value=6e-13 Score=122.25 Aligned_cols=84 Identities=14% Similarity=0.156 Sum_probs=55.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. .. ..+..|+.......+.+.+.. ..+.||||||....
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~~-~~-~~~~~t~~~~~~~~~~~~~~~---------------~~l~i~Dt~G~~~~ 89 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKDC-FP-ENYVPTVFENYTASFEIDTQR---------------IELSLWDTSGSPYY 89 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSC-CC-SSCCCCSEEEEEEEEESSSSE---------------EEEEEEEECCSGGG
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcCC-CC-CCcCCccceeEEEEEEECCEE---------------EEEEEEeCCCcHhh
Confidence 34799999999999999999999543 22 222222222222334443322 46999999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.. .....+++||++++|+|++
T Consensus 90 ~~-------~~~~~~~~~d~~ilv~D~~ 110 (205)
T 1gwn_A 90 DN-------VRPLSYPDSDAVLICFDIS 110 (205)
T ss_dssp TT-------TGGGGCTTCSEEEEEEETT
T ss_pred hH-------HHHhhccCCCEEEEEEECC
Confidence 22 2234578999999999975
No 141
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.43 E-value=3.4e-12 Score=113.99 Aligned_cols=55 Identities=24% Similarity=0.167 Sum_probs=44.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
++|+++|.+|||||||+|+|+ +.....+..|++|.++...... .+.+|||||+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~-~~~~~~~~~~~~t~~~~~~~~~---------------------~~~l~Dt~G~~~ 56 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLT-GKKVRRGKRPGVTRKIIEIEWK---------------------NHKIIDMPGFGF 56 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHH-SCCCSSSSSTTCTTSCEEEEET---------------------TEEEEECCCBSC
T ss_pred cEEEEECCCCCCHHHHHHHHh-CcCCccCCCCCccceeEEEecC---------------------CEEEEECCCccc
Confidence 689999999999999999999 4556777888888876654431 389999999743
No 142
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.14 E-value=1.2e-14 Score=132.50 Aligned_cols=85 Identities=18% Similarity=0.171 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.||||||||+|+|+++. . ...++.|+.+.....+.+.+. ...+.+|||||....
T Consensus 29 ~~~ki~v~G~~~~GKSsli~~l~~~~-~-~~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~Dt~G~~~~ 91 (204)
T 3th5_A 29 QAIKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGK---------------PVNLGLWDTAGQEDY 91 (204)
Confidence 45899999999999999999999433 2 233444444444333333331 135779999998543
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. ......++++|++++|+|+++
T Consensus 92 ~-------~~~~~~~~~~d~iilv~D~~~ 113 (204)
T 3th5_A 92 D-------RLRPLSYPQTDVFLICFSLVS 113 (204)
Confidence 2 233456789999999999864
No 143
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.42 E-value=2.5e-13 Score=139.60 Aligned_cols=85 Identities=13% Similarity=0.098 Sum_probs=63.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceec------------------------------CCCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAA------------------------------NFPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs------------------------------~~p~tT~~~~~~~~~~~~~ 104 (423)
..++|+++|.+|+|||||+|+|++....... ..+++|++.....+..++
T Consensus 16 ~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~~- 94 (439)
T 3j2k_7 16 EHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETEK- 94 (439)
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecCC-
Confidence 3479999999999999999999743222211 125667776666665554
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||.. .+.......+++||++++|+|+.+
T Consensus 95 ----------------~~~~iiDTPGh~-------~f~~~~~~~~~~aD~~ilVVDa~~ 130 (439)
T 3j2k_7 95 ----------------KHFTILDAPGHK-------SFVPNMIGGASQADLAVLVISARK 130 (439)
T ss_pred ----------------eEEEEEECCChH-------HHHHHHHhhHhhCCEEEEEEECCC
Confidence 569999999974 334566777899999999999864
No 144
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.41 E-value=6e-13 Score=142.05 Aligned_cols=84 Identities=19% Similarity=0.179 Sum_probs=65.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecC------------------------------CCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~------------------------------~p~tT~~~~~~~~~~~~~ 104 (423)
..++|+++|.||+|||||+|+|++.......+ .+++|++.....+..++
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~- 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHR- 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSS-
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCC-
Confidence 35899999999999999999999543322211 25778887777666654
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.++.||||||.. .+...+...++.||++|+|+|++
T Consensus 245 ----------------~~~~iiDTPG~e-------~f~~~~~~~~~~aD~~llVVDa~ 279 (611)
T 3izq_1 245 ----------------ANFTIVDAPGHR-------DFVPNAIMGISQADMAILCVDCS 279 (611)
T ss_dssp ----------------CEEEEEECCSSS-------CHHHHHTTTSSCCSEEEEEEECS
T ss_pred ----------------ceEEEEECCCCc-------ccHHHHHHHHhhcCceEEEEECC
Confidence 579999999983 34567778899999999999985
No 145
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.40 E-value=2.3e-12 Score=125.74 Aligned_cols=87 Identities=17% Similarity=0.135 Sum_probs=63.1
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
....++|+++|.||||||||+|+++++. . ...++.||.+.....+.+.+.. ..+.+|||||..
T Consensus 152 ~~~~~~i~i~G~~~~GKssli~~~~~~~-~-~~~~~~t~~~~~~~~~~~~~~~---------------~~~~l~Dt~G~~ 214 (332)
T 2wkq_A 152 AKELIKCVVVGDGAVGKTCLLISYTTNA-F-PGEYIPTVFDNYSANVMVDGKP---------------VNLGLWDTAGLE 214 (332)
T ss_dssp HTTCEEEEEEESTTSSHHHHHHHHHHSC-C-CCSCCCCSEEEEEEEEEETTEE---------------EEEEEEEECCCG
T ss_pred ccceeEEEEECCCCCChHHHHHHHHhCC-C-CcccCCcccceeEEEEEECCEE---------------EEEEEEeCCCch
Confidence 4556899999999999999999999543 2 3456666666655555554422 457799999985
Q ss_pred CCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.... .....++.||++++|+|+++
T Consensus 215 ~~~~-------~~~~~~~~~d~~i~v~d~~~ 238 (332)
T 2wkq_A 215 DYDR-------LRPLSYPQTDVFLICFSLVS 238 (332)
T ss_dssp GGTT-------TGGGGCTTCSEEEEEEETTC
T ss_pred hhhH-------HHHHhccCCCEEEEEEeCCC
Confidence 4332 33456789999999999753
No 146
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.40 E-value=4.9e-13 Score=129.19 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~ 82 (423)
..++|+++|.||||||||+|+|+|....
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~ 52 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFL 52 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence 3479999999999999999999976544
No 147
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.39 E-value=1.8e-12 Score=118.85 Aligned_cols=83 Identities=20% Similarity=0.200 Sum_probs=57.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++.. ....++.++ .....+.+++.+ ...+.+|||||...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~--~~~~~~~~~--~~~~~~~~~~~~--------------~~~~~i~Dt~G~~~- 66 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQ--YRDTQTSIT--DSSAIYKVNNNR--------------GNSLTLIDLPGHES- 66 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSC--CCCBCCCCS--CEEEEEECSSTT--------------CCEEEEEECCCCHH-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC--cccccCCcc--eeeEEEEecCCC--------------ccEEEEEECCCChh-
Confidence 34899999999999999999999554 234455443 333345555321 15699999999842
Q ss_pred CCcccchhh-HHhhhhhhcceEEEEEecc
Q 014539 135 ASQGEGLGN-KFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~-~~l~~ir~aD~il~Vvd~~ 162 (423)
+.. .....++.+|++++|+|++
T Consensus 67 ------~~~~~~~~~~~~~~~~i~v~d~~ 89 (214)
T 2fh5_B 67 ------LRFQLLDRFKSSARAVVFVVDSA 89 (214)
T ss_dssp ------HHHHHHHHHGGGEEEEEEEEETT
T ss_pred ------HHHHHHHHHHhhCCEEEEEEECC
Confidence 222 2334588999999999974
No 148
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.39 E-value=4.3e-12 Score=125.51 Aligned_cols=81 Identities=23% Similarity=0.283 Sum_probs=57.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+|+|.||||||||+|+|++... +...| |+......+...+ ..+.||||||....
T Consensus 164 ~~~kI~ivG~~~vGKSsLl~~l~~~~~--~~~~p--T~~~~~~~~~~~~-----------------~~l~i~Dt~G~~~~ 222 (329)
T 3o47_A 164 KEMRILMVGLDAAGKTTILYKLKLGEI--VTTIP--TIGFNVETVEYKN-----------------ISFTVWDVGGQDKI 222 (329)
T ss_dssp CSEEEEEEESTTSSHHHHHHHTCSSCC--EEEEE--ETTEEEEEEEETT-----------------EEEEEEECC-----
T ss_pred CcceEEEECCCCccHHHHHHHHhCCCC--CCccc--ccceEEEEEecCc-----------------EEEEEEECCCCHhH
Confidence 346999999999999999999995543 23333 6666666555543 56999999996443
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++.+|++++|+|+++
T Consensus 223 ~~-------~~~~~~~~ad~vilV~D~~~ 244 (329)
T 3o47_A 223 RP-------LWRHYFQNTQGLIFVVDSND 244 (329)
T ss_dssp CC-------SHHHHHTTEEEEEEEEETTC
T ss_pred HH-------HHHHHhccCCEEEEEEECCc
Confidence 32 35566889999999999864
No 149
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.39 E-value=3.4e-12 Score=121.88 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=69.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|||||||+|+|++...+.+++++++|..+....+...+ ..+.||||||+...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~liDTpG~~~~ 97 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG-----------------FTINIIDTPGLVEA 97 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC-----------------eeEEEEECCCCCCc
Confidence 3489999999999999999999987777889999999999888877765 46999999999765
Q ss_pred CCcccchhhHHhhhhh------hcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSHIR------EVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir------~aD~il~Vvd~~ 162 (423)
.... ..+...++ .+|++++|+|+.
T Consensus 98 ~~~~----~~~~~~i~~~l~~~~~~~il~V~~~d 127 (262)
T 3def_A 98 GYVN----HQALELIKGFLVNRTIDVLLYVDRLD 127 (262)
T ss_dssp TEEC----HHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccch----HHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 4432 23333333 789999998863
No 150
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.38 E-value=6.4e-12 Score=113.85 Aligned_cols=88 Identities=15% Similarity=0.180 Sum_probs=54.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEE--ecCCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIV--AVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~--~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
...++|+++|.+|||||||+|.+++..... +..+.++....+ .+.+. ....+.+|||||.
T Consensus 18 ~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~--------------~~~~l~i~Dt~G~ 79 (196)
T 3llu_A 18 GSKPRILLMGLRRSGKSSIQKVVFHKMSPN----ETLFLESTNKIYKDDISNS--------------SFVNFQIWDFPGQ 79 (196)
T ss_dssp --CCEEEEEESTTSSHHHHHHHHHSCCCGG----GGGGCCCCCSCEEEEECCT--------------TSCCEEEEECCSS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhcCCCc----ceeeeccccceeeeeccCC--------------CeeEEEEEECCCC
Confidence 345899999999999999999999532221 222222221111 11110 1256999999998
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
....... ......+++||++++|+|+++
T Consensus 80 ~~~~~~~----~~~~~~~~~~~~~i~v~d~~~ 107 (196)
T 3llu_A 80 MDFFDPT----FDYEMIFRGTGALIYVIDAQD 107 (196)
T ss_dssp CCTTCTT----CCHHHHHHTCSEEEEEEETTS
T ss_pred HHHHhhh----hhcccccccCCEEEEEEECCC
Confidence 5533211 001466789999999999753
No 151
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.37 E-value=5.8e-12 Score=114.44 Aligned_cols=84 Identities=18% Similarity=0.123 Sum_probs=60.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|||||||+|+|+|.. ......|..+.++..+.+.+.+.. ..+.+|||||.....
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~-~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 68 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGQERYR 68 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSC-CCC---CCCSCEEEEEEEEETTEE---------------EEEEEEECSSGGGTT
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCccceeEEEEEEEECCEE---------------EEEEEEECCCchhhh
Confidence 3799999999999999999999644 333344666667777777776632 358899999975432
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .....++.+|++++|+|++
T Consensus 69 ~-------~~~~~~~~~~~~i~v~d~~ 88 (199)
T 2f9l_A 69 R-------ITSAYYRGAVGALLVYDIA 88 (199)
T ss_dssp C-------CCHHHHTTCSEEEEEEETT
T ss_pred h-------hhHHHHhcCCEEEEEEECc
Confidence 2 1223456899999999974
No 152
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.37 E-value=2e-12 Score=116.09 Aligned_cols=88 Identities=18% Similarity=0.157 Sum_probs=49.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCC-CCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANF-PFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~-p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
++|+|+|.||||||||+|+|++......+.+ |..+.+.....+.+... .-....+.+|||||+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~------------~~~~~~~~i~Dt~G~~~~~ 70 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDK------------RKRDLVLNVWDFAGREEFY 70 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------------------CEEEEEEECSHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccC------------CCCceEEEEEecCCCHHHH
Confidence 7999999999999999999995432222222 22222222221111000 0012568999999984322
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+ .....++.+|++++|+|+++
T Consensus 71 ~-------~~~~~~~~~~~~i~v~d~~~ 91 (184)
T 2zej_A 71 S-------THPHFMTQRALYLAVYDLSK 91 (184)
T ss_dssp T-------TSHHHHHHSEEEEEEEEGGG
T ss_pred H-------hhHHHccCCcEEEEEEeCCc
Confidence 1 22345788999999999753
No 153
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.37 E-value=3.5e-12 Score=138.13 Aligned_cols=108 Identities=18% Similarity=0.182 Sum_probs=69.6
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEE-------EEec-CCc-------------------
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVG-------IVAV-PDP------------------- 104 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~-------~~~~-~~~------------------- 104 (423)
.....++|+|+|.||+|||||+|+|+|...++++..|.|+.-.... ...+ ++.
T Consensus 65 l~~~~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~ 144 (695)
T 2j69_A 65 LQQGVFRLLVLGDMKRGKSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPA 144 (695)
T ss_dssp HHHCCEEEEEECCTTSCHHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHH
Confidence 3456789999999999999999999988878888888773111100 0100 000
Q ss_pred cch-------------hhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 105 RLH-------------VLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 105 r~~-------------~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
... ....++.|.......+.||||||+.... .....+..++++||++++|+|++.
T Consensus 145 ~~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~----~~~~~~~~~i~~aD~vL~Vvda~~ 212 (695)
T 2j69_A 145 EAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE----ARNELSLGYVNNCHAILFVMRASQ 212 (695)
T ss_dssp HHHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH----TCHHHHTHHHHSSSEEEEEEETTS
T ss_pred HHHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh----hHHHHHHHHHHhCCEEEEEEeCCC
Confidence 000 0112233333322469999999985422 134567788999999999999853
No 154
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.36 E-value=9.8e-13 Score=138.30 Aligned_cols=158 Identities=15% Similarity=0.158 Sum_probs=84.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...+||++||.||||||||+|+|++.. ......| |..........+..+ .+.-........+.+|||||...
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~-~~~~~~~--t~g~~~~~~~~~~~~-----~v~~~~~~~~~~~~i~Dt~G~e~ 110 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGET-FDPKESQ--THGLNVVTKQAPNIK-----GLENDDELKECLFHFWDFGGQEI 110 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC--------------CCCEEEEEGGGSG-----GGTTCSTTTTCEEEEECCCSCCT
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCC-CCCCCCC--ccceEEEEecccccc-----ceeecCCCceEEEEEEECCcHHH
Confidence 345899999999999999999999543 2211112 221222211111100 00000011135799999999643
Q ss_pred CCCcccchhhHHhhhhhhcceEEEEEeccCCcceeeecccccCCcchHHHhhhhccCcHHHHHHHHHHhhhccccchhhh
Q 014539 134 GASQGEGLGNKFLSHIREVDSILQVVRCFEDNDIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKKGKAKDSQSK 213 (423)
Q Consensus 134 ~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~~~~~~~sa~ 213 (423)
... + ....++++|++++|+|+++.+ +...
T Consensus 111 ~~~----~---~~~~l~~~d~ii~V~D~s~~~-------------~~~~------------------------------- 139 (535)
T 3dpu_A 111 MHA----S---HQFFMTRSSVYMLLLDSRTDS-------------NKHY------------------------------- 139 (535)
T ss_dssp TTT----T---CHHHHHSSEEEEEEECGGGGG-------------GHHH-------------------------------
T ss_pred HHH----H---HHHHccCCcEEEEEEeCCCch-------------hHHH-------------------------------
Confidence 332 1 223467799999999975310 1100
Q ss_pred hhHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHhhhhCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcE
Q 014539 214 LKDAEKAALEKIQQALMDGKPARSVTLNDFERDSIKQLCLLTMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGR 293 (423)
Q Consensus 214 ~~~~~~~ll~~i~~~L~~~~~~~~~~~t~~e~e~ir~~~~~t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~ 293 (423)
++..+. .+ ....|+++|+||.| .... .....+++++++...+.++
T Consensus 140 -------~~~~l~-----------------------~~--~~~~pvilV~NK~D--l~~~-~~v~~~~~~~~~~~~~~~~ 184 (535)
T 3dpu_A 140 -------WLRHIE-----------------------KY--GGKSPVIVVMNKID--ENPS-YNIEQKKINERFPAIENRF 184 (535)
T ss_dssp -------HHHHHH-----------------------HH--SSSCCEEEEECCTT--TCTT-CCCCHHHHHHHCGGGTTCE
T ss_pred -------HHHHHH-----------------------Hh--CCCCCEEEEEECCC--cccc-cccCHHHHHHHHHhcCCce
Confidence 000010 00 13579999999995 4432 2335667788777778889
Q ss_pred EEechhhhHhhc
Q 014539 294 VTISAQVEAELT 305 (423)
Q Consensus 294 v~~Sa~~e~~i~ 305 (423)
+++||+.+.++.
T Consensus 185 ~~vSA~~g~gi~ 196 (535)
T 3dpu_A 185 HRISCKNGDGVE 196 (535)
T ss_dssp EECCC-----CT
T ss_pred EEEecCcccCHH
Confidence 999999988753
No 155
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.35 E-value=1e-11 Score=127.38 Aligned_cols=84 Identities=17% Similarity=0.094 Sum_probs=54.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce----------ecCCCCccc----------------------cceEEEEecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ----------AANFPFCTI----------------------EPNVGIVAVPD 103 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~----------vs~~p~tT~----------------------~~~~~~~~~~~ 103 (423)
.++|+++|.+|+|||||+|+|++..... .+..++||. +.....+..+
T Consensus 24 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~- 102 (434)
T 1zun_B 24 MLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA- 102 (434)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS-
T ss_pred ceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC-
Confidence 3799999999999999999999654322 222334432 2211112211
Q ss_pred ccchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 104 PRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 104 ~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.||||||.. .+.......++.||++++|+|+.+
T Consensus 103 ----------------~~~~~iiDtpGh~-------~f~~~~~~~~~~aD~~ilVvDa~~ 139 (434)
T 1zun_B 103 ----------------KRKFIIADTPGHE-------QYTRNMATGASTCDLAIILVDARY 139 (434)
T ss_dssp ----------------SEEEEEEECCCSG-------GGHHHHHHHHTTCSEEEEEEETTT
T ss_pred ----------------CceEEEEECCChH-------HHHHHHHHHHhhCCEEEEEEECCC
Confidence 2469999999974 234456677899999999999864
No 156
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.34 E-value=4.3e-12 Score=114.91 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=62.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+|+|.+|||||||+|+|+|.. ......|..+.+...+.+.+.+.. ..+.+|||||+.+..
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~-~~~~~~~t~~~~~~~~~i~~~g~~---------------~~~~i~Dt~g~~~~~ 92 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE-FNLESKSTIGVEFATRSIQVDGKT---------------IKAQIWDTAGLERYR 92 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC-CCCSCCCCCSEEEEEEEEEETTEE---------------EEEEEEEECSCCSSS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC-CCCCCCCccceEEEEEEEEECCEE---------------EEEEEEECCCCcchh
Confidence 4799999999999999999999544 334455667777777877776632 346789999986443
Q ss_pred CcccchhhHHhhhhhhcceEEEEEecc
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
. .....++.+|++++|+|..
T Consensus 93 ~-------~~~~~~~~~~~~i~v~d~~ 112 (191)
T 1oix_A 93 A-------ITSAYYRGAVGALLVYDIA 112 (191)
T ss_dssp C-------CCHHHHTTCCEEEEEEETT
T ss_pred h-------hhHHHhhcCCEEEEEEECc
Confidence 2 2234567899999999964
No 157
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.30 E-value=3.1e-11 Score=120.52 Aligned_cols=103 Identities=18% Similarity=0.196 Sum_probs=62.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhc-------------------------
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLS------------------------- 110 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~------------------------- 110 (423)
-++|++||.+|||||||+|+|+|....+ .....+|+.|..-............+
T Consensus 34 lp~I~vvG~~~sGKSSLln~l~g~~~lp-~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSGKSSVLESIVGKDFLP-RGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSSHHHHHHHHHTSCCSC-CCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCcCC-CCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 4699999999999999999999644322 22334555544333211100000000
Q ss_pred ----------------cccccccccCceEEEEecCCCcCCCCc------ccchhhHHhhhhhhcceEEEEEecc
Q 014539 111 ----------------GLSKSQKAVPASVEFVDIAGLVKGASQ------GEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 111 ----------------~~~~~~~~~~~~i~lvDtpGl~~~~~~------~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.++.|. ...+.||||||+...... ...+...+..+++++|++++|+|+.
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~---~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~ 183 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPN---VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA 183 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETT---SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET
T ss_pred HhcCCCCCcccceEEEEEeCCC---CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc
Confidence 001111 235899999999764321 2233466678899999999999864
No 158
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.30 E-value=1.3e-12 Score=136.97 Aligned_cols=85 Identities=20% Similarity=0.194 Sum_probs=64.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|+|||||+|+|++.. ......|++|.+.....+..++. ..+.||||||....
T Consensus 3 r~pkV~IvG~~~vGKTSLl~~L~~~~-~~~~~~~giT~~i~~~~v~~~~g----------------~~i~~iDTPGhe~f 65 (537)
T 3izy_P 3 RSPVVTIMGHVDHGKTTLLDKLRKTQ-VAAMEAGGITQHIGAFLVSLPSG----------------EKITFLDTPGHAAF 65 (537)
T ss_dssp CCCBCEEEESTTTTHHHHHHHHHHHH-HHHSSSCCBCCCTTSCCBCSSCS----------------SCCBCEECSSSCCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC-cccccCCceeEEEeEEEEEeCCC----------------CEEEEEECCChHHH
Confidence 35789999999999999999999544 44457788998877666655331 35899999997544
Q ss_pred CCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 135 ASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 135 ~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.. .....++.+|++++|+|+.+
T Consensus 66 ~~-------~~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 66 SA-------MRARGTQVTDIVILVVAADD 87 (537)
T ss_dssp TT-------SBBSSSBSBSSCEEECBSSS
T ss_pred HH-------HHHHHHccCCEEEEEEECCC
Confidence 33 23345688999999999864
No 159
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.28 E-value=7.9e-12 Score=114.80 Aligned_cols=78 Identities=22% Similarity=0.284 Sum_probs=52.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCccee--cCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQA--ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~v--s~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
...++|+++|.||||||||+|+|++...... +..|.++.+. ....+.+|||||+
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~l~Dt~G~ 65 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY------------------------DGSGVTLVDFPGH 65 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETTG------------------------GGSSCEEEECCCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEEe------------------------eCceEEEEECCCc
Confidence 3458999999999999999999995442211 2223222211 1145999999998
Q ss_pred cCCCCcccchhhHHhhhhhh----cceEEEEEecc
Q 014539 132 VKGASQGEGLGNKFLSHIRE----VDSILQVVRCF 162 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~----aD~il~Vvd~~ 162 (423)
.... ......++. +|++++|+|++
T Consensus 66 ~~~~-------~~~~~~~~~~~~~~~~~i~v~D~~ 93 (218)
T 1nrj_B 66 VKLR-------YKLSDYLKTRAKFVKGLIFMVDST 93 (218)
T ss_dssp GGGT-------HHHHHHHHHHGGGEEEEEEEEETT
T ss_pred HHHH-------HHHHHHHHhccccCCEEEEEEECC
Confidence 5432 233344444 99999999986
No 160
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.28 E-value=2.4e-11 Score=123.27 Aligned_cols=100 Identities=21% Similarity=0.242 Sum_probs=58.3
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccc---hhhcccc--ccccccCceEEEEec
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRL---HVLSGLS--KSQKAVPASVEFVDI 128 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~---~~l~~~~--~~~~~~~~~i~lvDt 128 (423)
...++|+++|.+|+|||||+|+|++........++.+|.... ...+..+. +...... .........+.||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDt 82 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVC---ESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDA 82 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEEC---TTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeec---cccccccceecccccccccccccccccceEEEEEC
Confidence 345899999999999999999999643332222222221100 00000000 0000000 000001146999999
Q ss_pred CCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 129 AGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 129 pGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
||. +.+.......++.||++++|+|+.+
T Consensus 83 PGh-------~~~~~~~~~~~~~~D~~ilVvda~~ 110 (403)
T 3sjy_A 83 PGH-------EVLMATMLSGAALMDGAILVVAANE 110 (403)
T ss_dssp CCC-------GGGHHHHHHHHTTCSEEEEEEETTS
T ss_pred CCc-------HHHHHHHHHHHhhCCEEEEEEECCC
Confidence 996 3455677888999999999999864
No 161
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.27 E-value=3.6e-12 Score=132.49 Aligned_cols=84 Identities=24% Similarity=0.252 Sum_probs=57.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc------ceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK------AQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~------~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
.++|+++|.+|+|||||+|+|++... ...+..+++|++.....+.+++ ..+.|||||
T Consensus 19 ~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~-----------------~~i~iiDtP 81 (482)
T 1wb1_A 19 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN-----------------YRITLVDAP 81 (482)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETT-----------------EEEEECCCS
T ss_pred CCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC-----------------EEEEEEECC
Confidence 37999999999999999999996541 2344566778777666665544 569999999
Q ss_pred CCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 130 GLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
|.. .+.......++.||++++|+|+.+
T Consensus 82 Gh~-------~~~~~~~~~~~~aD~~ilVvda~~ 108 (482)
T 1wb1_A 82 GHA-------DLIRAVVSAADIIDLALIVVDAKE 108 (482)
T ss_dssp SHH-------HHHHHHHHHTTSCCEEEEEEETTT
T ss_pred ChH-------HHHHHHHHHHhhCCEEEEEEecCC
Confidence 972 345566788899999999999864
No 162
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.25 E-value=1.3e-12 Score=139.00 Aligned_cols=85 Identities=14% Similarity=0.077 Sum_probs=41.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecC------------------------------CCCccccceEEEEecCCc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAAN------------------------------FPFCTIEPNVGIVAVPDP 104 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~------------------------------~p~tT~~~~~~~~~~~~~ 104 (423)
..++|+++|.+|+|||||+|+|++......++ .+++|++.....+..++
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~~- 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESDK- 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeCC-
Confidence 34789999999999999999997532222211 45667776666555443
Q ss_pred cchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 105 RLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 105 r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||..... ......++.||++|+|||+.+
T Consensus 255 ----------------~~i~iiDTPGh~~f~-------~~~~~~~~~aD~alLVVDa~~ 290 (592)
T 3mca_A 255 ----------------KIYEIGDAPGHRDFI-------SGMIAGASSADFAVLVVDSSQ 290 (592)
T ss_dssp --------------------CCEEESSSEEE-------EECCC-------CCSEEEEEE
T ss_pred ----------------eEEEEEECCChHHHH-------HHHHHHHhhCCEEEEEEECCC
Confidence 468999999985432 234556788999999999864
No 163
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.25 E-value=1.9e-11 Score=125.28 Aligned_cols=84 Identities=17% Similarity=0.149 Sum_probs=54.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce------------------------------ecCCCCccccceEEEEecCCcc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------------AANFPFCTIEPNVGIVAVPDPR 105 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~------------------------------vs~~p~tT~~~~~~~~~~~~~r 105 (423)
.++|+++|.+|+|||||+|+|++..... ....+++|++.....+..++
T Consensus 6 ~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~-- 83 (435)
T 1jny_A 6 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKK-- 83 (435)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSS--
T ss_pred EEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCC--
Confidence 3799999999999999999998531110 00135667766555444433
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||..+ +.......++.||++++|+|+.+
T Consensus 84 ---------------~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvDa~~ 119 (435)
T 1jny_A 84 ---------------YFFTIIDAPGHRD-------FVKNMITGASQADAAILVVSAKK 119 (435)
T ss_dssp ---------------CEEEECCCSSSTT-------HHHHHHHTSSCCSEEEEEEECST
T ss_pred ---------------eEEEEEECCCcHH-------HHHHHHhhhhhcCEEEEEEECCC
Confidence 5699999999843 33456778899999999999864
No 164
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.24 E-value=5.1e-11 Score=125.01 Aligned_cols=84 Identities=20% Similarity=0.230 Sum_probs=63.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce---------------e------cCCCCccccceEEEEecCCccchhhccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------A------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~---------------v------s~~p~tT~~~~~~~~~~~~~r~~~l~~~~~ 114 (423)
..+|+|+|.||||||||+|+|++...+. + ...+++|+......+...+
T Consensus 13 ~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~----------- 81 (528)
T 3tr5_A 13 RRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKD----------- 81 (528)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETT-----------
T ss_pred CCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCC-----------
Confidence 3689999999999999999996322111 1 1135677777777776655
Q ss_pred cccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 115 ~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||..... ..+...++.||++++|+|+++
T Consensus 82 ------~~i~liDTPG~~df~-------~~~~~~l~~aD~allVvDa~~ 117 (528)
T 3tr5_A 82 ------YLINLLDTPGHADFT-------EDTYRTLTAVDSALMVIDAAK 117 (528)
T ss_dssp ------EEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTT
T ss_pred ------EEEEEEECCCchhHH-------HHHHHHHHhCCEEEEEEeCCC
Confidence 569999999986543 367888999999999999864
No 165
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.24 E-value=1.8e-11 Score=117.23 Aligned_cols=91 Identities=22% Similarity=0.232 Sum_probs=67.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKG 134 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~ 134 (423)
..++|+++|.+|+|||||+|+|++.....+++.+++|.++....+...+ ..+.+|||||+...
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~l~iiDTpG~~~~ 100 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRAG-----------------FTLNIIDTPGLIEG 100 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEETT-----------------EEEEEEECCCSEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeCC-----------------eEEEEEECCCCCCC
Confidence 3589999999999999999999977777788899999888776665443 46999999999765
Q ss_pred CCcccchhhHHhhh--hhhcceEEEEEecc
Q 014539 135 ASQGEGLGNKFLSH--IREVDSILQVVRCF 162 (423)
Q Consensus 135 ~~~~~~l~~~~l~~--ir~aD~il~Vvd~~ 162 (423)
........+.+... .+.+|++++|+|+.
T Consensus 101 ~~~~~~~~~~i~~~~~~~~~d~il~v~~~d 130 (270)
T 1h65_A 101 GYINDMALNIIKSFLLDKTIDVLLYVDRLD 130 (270)
T ss_dssp TEECHHHHHHHHHHTTTCEECEEEEEEESS
T ss_pred ccchHHHHHHHHHHhhcCCCCEEEEEEeCC
Confidence 43222221222111 24799999998863
No 166
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.22 E-value=2.9e-11 Score=122.90 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=62.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc--eecCCCCccccceEEEEecCCccchhhcccccccccc---------CceE
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV---------PASV 123 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~--~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~---------~~~i 123 (423)
..++|+++|.+|+|||||+|+|+|.... .....++.|++.......+... +... .|...... ...+
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~--~~~~-~y~~~~~~~~~g~~~~~~~~i 85 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRC--PNCG-RYSTSPVCPYCGHETEFVRRV 85 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEEC--TTTC-CEESSSBCTTTCCBCEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccc--cccc-cccccccccccCcccccccEE
Confidence 3479999999999999999999964322 2223467787765544332110 0000 01100000 1469
Q ss_pred EEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.||||||.. .+...+...+..+|++++|+|+.+
T Consensus 86 ~iiDtPGh~-------~f~~~~~~~~~~~D~~ilVvda~~ 118 (410)
T 1kk1_A 86 SFIDAPGHE-------ALMTTMLAGASLMDGAILVIAANE 118 (410)
T ss_dssp EEEECSSHH-------HHHHHHHHCGGGCSEEEEEEETTS
T ss_pred EEEECCChH-------HHHHHHHhhhhhCCEEEEEEECCC
Confidence 999999963 344556777889999999999864
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.22 E-value=7.5e-11 Score=119.69 Aligned_cols=85 Identities=18% Similarity=0.185 Sum_probs=59.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC--c---ce-----e------cCCCCccccceEEEEecCCccchhhccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG--K---AQ-----A------ANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~--~---~~-----v------s~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
..++|+++|.+|+|||||+|+|++.. . +. . ...++.|++.....+...+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--------------- 74 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAK--------------- 74 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSS---------------
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCC---------------
Confidence 34799999999999999999999531 0 00 0 0124556665444443332
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||... +.......++.||++++|+|+.+
T Consensus 75 --~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvda~~ 110 (405)
T 2c78_A 75 --RHYSHVDCPGHAD-------YIKNMITGAAQMDGAILVVSAAD 110 (405)
T ss_dssp --CEEEEEECCCSGG-------GHHHHHHHHTTCSSEEEEEETTT
T ss_pred --eEEEEEECCChHH-------HHHHHHHHHHHCCEEEEEEECCC
Confidence 5699999999853 34566778899999999999864
No 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.22 E-value=1.4e-11 Score=127.14 Aligned_cols=83 Identities=14% Similarity=0.155 Sum_probs=60.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcc------------------------eecC------CCCccccceEEEEecCCcc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKA------------------------QAAN------FPFCTIEPNVGIVAVPDPR 105 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~------------------------~vs~------~p~tT~~~~~~~~~~~~~r 105 (423)
.++|+++|.+|+|||||+|+|++.... .+.+ .++.|++.....+..++
T Consensus 7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~-- 84 (458)
T 1f60_A 7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK-- 84 (458)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSS--
T ss_pred eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCC--
Confidence 378999999999999999999853110 0001 24667776665555443
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
.++.||||||.. .+.......++.||++++|+|+.
T Consensus 85 ---------------~~~~iiDtPGh~-------~f~~~~~~~~~~aD~~ilVvda~ 119 (458)
T 1f60_A 85 ---------------YQVTVIDAPGHR-------DFIKNMITGTSQADCAILIIAGG 119 (458)
T ss_dssp ---------------EEEEEEECCCCT-------THHHHHHHSSSCCSEEEEEEECS
T ss_pred ---------------ceEEEEECCCcH-------HHHHHHHhhhhhCCEEEEEEeCC
Confidence 569999999963 34445677789999999999985
No 169
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.22 E-value=5.7e-11 Score=118.43 Aligned_cols=28 Identities=21% Similarity=0.237 Sum_probs=24.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~ 82 (423)
..++|++||.||||||||+|+|+|....
T Consensus 30 ~~~~I~vvG~~~~GKSSLln~L~g~~~~ 57 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKSSVLENFVGRDFL 57 (353)
T ss_dssp CCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred CCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence 3479999999999999999999976543
No 170
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.20 E-value=8.1e-11 Score=119.61 Aligned_cols=99 Identities=19% Similarity=0.145 Sum_probs=59.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc--eecCCCCccccceEEEEecCCccchhhcccccccccc---------CceE
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV---------PASV 123 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~--~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~---------~~~i 123 (423)
..++|+++|.+|+|||||+|+|+|.... .....++.|++.......+... +... .|...... ...+
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~--~~~~-~y~~~~~~~~~g~~~~~~~~i 83 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKC--PQCG-TYTTKPRCPNCLAETEFLRRV 83 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEEC--TTTC-CEESSSBCTTSCCBCEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccc--cccc-cccccccccccCcccccccEE
Confidence 3489999999999999999999964322 2223366677765443322100 0000 01110000 1469
Q ss_pred EEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 124 EFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 124 ~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.||||||.. .+...+...+..+|++++|+|+.+
T Consensus 84 ~iiDtPGh~-------~f~~~~~~~~~~~D~~ilVvda~~ 116 (408)
T 1s0u_A 84 SFVDSPGHE-------TLMATMLSGASLMDGAILVIAANE 116 (408)
T ss_dssp EEEECSSHH-------HHHHHHHTTCSCCSEEEEEEETTS
T ss_pred EEEECCCHH-------HHHHHHHHhHhhCCEEEEEEECCC
Confidence 999999962 334455666788899999999864
No 171
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.19 E-value=1.2e-11 Score=124.37 Aligned_cols=87 Identities=22% Similarity=0.251 Sum_probs=71.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc-----CcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAG 130 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~-----~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpG 130 (423)
..+|+++|.||||||||+|+|++. ..+.++++|+||++.....+ + ..+.++||||
T Consensus 162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtPG 221 (369)
T 3ec1_A 162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPL--E------------------SGATLYDTPG 221 (369)
T ss_dssp TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEEC--S------------------TTCEEEECCS
T ss_pred cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEe--C------------------CCeEEEeCCC
Confidence 468999999999999999999976 57889999999998765443 2 2389999999
Q ss_pred CcCCCCcccchhhHHhhhh---hhcceEEEEEecc
Q 014539 131 LVKGASQGEGLGNKFLSHI---REVDSILQVVRCF 162 (423)
Q Consensus 131 l~~~~~~~~~l~~~~l~~i---r~aD~il~Vvd~~ 162 (423)
+.........+....+..+ ++.|++++++|..
T Consensus 222 ~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~~ 256 (369)
T 3ec1_A 222 IINHHQMAHFVDARDLKIITPKREIHPRVYQLNEG 256 (369)
T ss_dssp CCCCSSGGGGSCTTTHHHHSCSSCCCCEEEEECTT
T ss_pred cCcHHHHHHHHhHHHHHHHhcccccCceEEEEcCC
Confidence 9876655566667777777 8899999999963
No 172
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.18 E-value=1.3e-10 Score=116.72 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=56.8
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
+|+++|.+|+|||||+|+|+ ..+.|++.....+..++ .++.||||||..+
T Consensus 23 ~i~iiG~~d~GKSTL~~~L~---------~~giTi~~~~~~~~~~~-----------------~~i~iiDtPGh~~---- 72 (370)
T 2elf_A 23 NVAIIGTEKSGRTSLAANLG---------KKGTSSDITMYNNDKEG-----------------RNMVFVDAHSYPK---- 72 (370)
T ss_dssp EEEEEESTTSSHHHHHHTTS---------EEEEESSSEEEEECSSS-----------------SEEEEEECTTTTT----
T ss_pred EEEEECCCCCCHHHHHHHHH---------hCCEEEEeeEEEEecCC-----------------eEEEEEECCChHH----
Confidence 89999999999999999998 34667777666665544 5699999999853
Q ss_pred ccchhhHHhhhhhhcceEEEEEe
Q 014539 138 GEGLGNKFLSHIREVDSILQVVR 160 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd 160 (423)
+.......++.||++++|+|
T Consensus 73 ---f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 73 ---TLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp ---CHHHHHHHHHTCSEEEEEEC
T ss_pred ---HHHHHHHHHHHCCEEEEEEc
Confidence 33456677899999999999
No 173
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.17 E-value=8e-11 Score=111.95 Aligned_cols=45 Identities=20% Similarity=0.208 Sum_probs=32.2
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHHHhh-cCCcEEEechhhhHhh
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASD-LQSGRVTISAQVEAEL 304 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~-~~~~~v~~Sa~~e~~i 304 (423)
...|+++++||.| +.. ....+++++++.. .+.+++.+||+.+.++
T Consensus 197 ~~~piilV~NK~D--l~~---~~~v~~~~~~~~~~~~~~~~e~SAk~g~gv 242 (255)
T 3c5h_A 197 TKKPIVVVLTKCD--EGV---ERYIRDAHTFALSKKNLQVVETSARSNVNV 242 (255)
T ss_dssp TTCCEEEEEECGG--GBC---HHHHHHHHHHHHTSSSCCEEECBTTTTBSH
T ss_pred CCCCEEEEEEccc--ccc---cHHHHHHHHHHHhcCCCeEEEEECCCCCCH
Confidence 4679999999995 432 1223566777765 3788999999987655
No 174
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.17 E-value=1.4e-11 Score=122.85 Aligned_cols=98 Identities=16% Similarity=0.200 Sum_probs=53.9
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhh------cCcceecCCCCccc-----------------cceEEEEecC-------
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTI-----------------EPNVGIVAVP------- 102 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg------~~~~~vs~~p~tT~-----------------~~~~~~~~~~------- 102 (423)
......|+|+|+||||||||+|+|++ ...+..+..|+++. ++..-+...+
T Consensus 71 ~~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg 150 (349)
T 2www_A 71 KPLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGG 150 (349)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC--------
T ss_pred ccCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCcccccc
Confidence 34568999999999999999999996 23344555555442 1111110111
Q ss_pred --CccchhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 103 --DPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 103 --~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
....+.+.. +. .....+.|+||||+.... ......+|++++|+|++..
T Consensus 151 ~tr~~~~~~~~-~~---~~~~~~iliDT~Gi~~~~----------~~l~~~~d~vl~V~d~~~~ 200 (349)
T 2www_A 151 VTRTTNEAILL-CE---GAGYDIILIETVGVGQSE----------FAVADMVDMFVLLLPPAGG 200 (349)
T ss_dssp -CTTHHHHHHH-HH---HTTCSEEEEECCCC--CH----------HHHHTTCSEEEEEECCC--
T ss_pred chHHHHHHHHh-hc---cCCCCEEEEECCCcchhh----------hhHHhhCCEEEEEEcCCcc
Confidence 000000000 00 113469999999985321 2235689999999998753
No 175
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.15 E-value=1.9e-10 Score=116.57 Aligned_cols=84 Identities=17% Similarity=0.158 Sum_probs=56.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce---------------ecCCCCccccceEEEEecCCccchhhccccccccccC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~---------------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
.++|+++|.+|+|||||+|+|++..... .....+.|++.....+...+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~----------------- 65 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAA----------------- 65 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSS-----------------
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCC-----------------
Confidence 3789999999999999999999531100 00123445544332222222
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||... +.......++.||++++|+|+.+
T Consensus 66 ~~~~iiDtpG~~~-------f~~~~~~~~~~aD~~ilVvda~~ 101 (397)
T 1d2e_A 66 RHYAHTDCPGHAD-------YVKNMITGTAPLDGCILVVAAND 101 (397)
T ss_dssp CEEEEEECSSHHH-------HHHHHHHTSSCCSEEEEEEETTT
T ss_pred eEEEEEECCChHH-------HHHHHHhhHhhCCEEEEEEECCC
Confidence 4699999999842 33455667889999999999864
No 176
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.13 E-value=4.7e-11 Score=129.48 Aligned_cols=193 Identities=16% Similarity=0.127 Sum_probs=109.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCC-----------ccc---h-----------hh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD-----------PRL---H-----------VL 109 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~-----------~r~---~-----------~l 109 (423)
..++|++||.+|+|||||+|+|+|....+.+.- .||+.|..-.+.... .++ + .+
T Consensus 50 ~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g-~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~ 128 (772)
T 3zvr_A 50 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSG-IVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV 128 (772)
T ss_dssp CCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSS-CSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCccCcCCc-cccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence 458999999999999999999997554344443 467666444332111 110 0 00
Q ss_pred c-------------cccccccccCceEEEEecCCCcCCCCc--c----cchhhHHhhhh-hhcceEEEEEeccCCc----
Q 014539 110 S-------------GLSKSQKAVPASVEFVDIAGLVKGASQ--G----EGLGNKFLSHI-REVDSILQVVRCFEDN---- 165 (423)
Q Consensus 110 ~-------------~~~~~~~~~~~~i~lvDtpGl~~~~~~--~----~~l~~~~l~~i-r~aD~il~Vvd~~~~~---- 165 (423)
. +++.|. ..++.|+||||+...... . ..+.+....++ ..+|++++|+|++.+.
T Consensus 129 ~g~~~~is~~~i~l~I~~P~---~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d 205 (772)
T 3zvr_A 129 TGTNKGISPVPINLRVYSPH---VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSD 205 (772)
T ss_dssp HCSTTCCCSCCEEEEEEETT---CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCH
T ss_pred cCCCCcccccceEEEEecCC---CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhH
Confidence 0 011111 236899999999863211 1 22333334444 5789999999997642
Q ss_pred -------------ceeeecccccCCcchHHHhhhhccCcHHHHHHHHHH--hhhccccchhhhhhHHHHHHHHHHHH---
Q 014539 166 -------------DIVHVNGKVDPKSDVDVINLELVFSDLDQIEKRMEK--LKKGKAKDSQSKLKDAEKAALEKIQQ--- 227 (423)
Q Consensus 166 -------------~~~~~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~--~~~~~~~~~sa~~~~~~~~ll~~i~~--- 227 (423)
.++.+.|+.|.+..-... .+......-. ..-......||+++.++..|++.+.+
T Consensus 206 ~l~ll~~L~~~g~pvIlVlNKiDlv~~~~~~--------~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e~~ 277 (772)
T 3zvr_A 206 ALKIAKEVDPQGQRTIGVITKLDLMDEGTDA--------RDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERK 277 (772)
T ss_dssp HHHHHHHHCTTCSSEEEEEECTTSSCTTCCS--------HHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCEEEEEeCcccCCcchhh--------HHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHHHH
Confidence 134455666655321100 0000000000 00000011256778787788887776
Q ss_pred HHhcCCCCCCCCCChH-----HHHHHH-HHhhhhCcceEE
Q 014539 228 ALMDGKPARSVTLNDF-----ERDSIK-QLCLLTMKPIIY 261 (423)
Q Consensus 228 ~L~~~~~~~~~~~t~~-----e~e~ir-~~~~~t~kpi~~ 261 (423)
.+++++++. .+|+. -.++|+ .++..+.+++||
T Consensus 278 ffpe~P~yd--~ltDr~g~~~LaEiLrEkL~~hi~~ELP~ 315 (772)
T 3zvr_A 278 FFLSHPSYR--HLADRMGTPYLQKVLNQQLTNHIRDTLPG 315 (772)
T ss_dssp HHHHCTTTG--GGGGGCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcchh--hhhhcccHHHHHHHHHHHHHHHHHhhCcc
Confidence 688888763 35554 278888 677789999999
No 177
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.12 E-value=1.7e-11 Score=127.63 Aligned_cols=83 Identities=18% Similarity=0.157 Sum_probs=60.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGA 135 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~ 135 (423)
.++|+++|.+|+|||||+|+|++. ....+..+++|.+.....+..++ ..+.||||||.....
T Consensus 4 ~~~V~IvGhvd~GKTTLl~~L~~~-~v~~~e~~GIT~~i~~~~v~~~~-----------------~~i~~iDTPGhe~f~ 65 (501)
T 1zo1_I 4 APVVTIMGHVDHGKTSLLEYIRST-KVASGEAGGITQHIGAYHVETEN-----------------GMITFLDTPGHAAFT 65 (501)
T ss_dssp CCCEEEEESTTSSSHHHHHHHHHH-HHSBTTBCCCCCCSSCCCCCTTS-----------------SCCCEECCCTTTCCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC-CCccccCCCeeEeEEEEEEEECC-----------------EEEEEEECCCcHHHH
Confidence 478999999999999999999943 33344556777765544443333 358999999986544
Q ss_pred CcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 136 SQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 136 ~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
. .....++.||++++|+|+.+
T Consensus 66 ~-------~~~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 66 S-------MRARGAQATDIVVLVVAADD 86 (501)
T ss_dssp T-------SBCSSSBSCSSEEEEEETTT
T ss_pred H-------HHHHHHhhCCEEEEEeeccc
Confidence 3 22345788999999999854
No 178
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.11 E-value=4e-11 Score=124.12 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce------------------------ecC------CCCccccceEEEEecCCcc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ------------------------AAN------FPFCTIEPNVGIVAVPDPR 105 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~------------------------vs~------~p~tT~~~~~~~~~~~~~r 105 (423)
.++|+++|.+|+|||||+|+|+...... +.+ ..+.|++.....+..++
T Consensus 43 ~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~-- 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH-- 120 (467)
T ss_dssp EEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS--
T ss_pred eeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC--
Confidence 4799999999999999999997422110 001 23445544433343332
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||..... ......++.||++++|+|+.+
T Consensus 121 ---------------~~~~iiDtPGh~~f~-------~~~~~~~~~aD~~ilVvDa~~ 156 (467)
T 1r5b_A 121 ---------------RRFSLLDAPGHKGYV-------TNMINGASQADIGVLVISARR 156 (467)
T ss_dssp ---------------EEEEECCCCC------------------TTSCSEEEEEEECST
T ss_pred ---------------eEEEEEECCCcHHHH-------HHHHhhcccCCEEEEEEeCCc
Confidence 569999999985432 245666789999999999864
No 179
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.10 E-value=6.8e-10 Score=120.17 Aligned_cols=84 Identities=18% Similarity=0.154 Sum_probs=58.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce-----------ecC------CCCccccceEEEEecCCccchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ-----------AAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----------vs~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
..+|+|+|.+|+|||||+|+|++..... +.+ .+++|+......+.+.+
T Consensus 10 ~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~--------------- 74 (693)
T 2xex_A 10 TRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEG--------------- 74 (693)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETT---------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECC---------------
Confidence 4689999999999999999999422111 111 34666666666555543
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.++.||||||..... ..+...++.||++++|+|+.+
T Consensus 75 --~~i~liDTPG~~df~-------~~~~~~l~~aD~~llVvDa~~ 110 (693)
T 2xex_A 75 --HRVNIIDTPGHVDFT-------VEVERSLRVLDGAVTVLDAQS 110 (693)
T ss_dssp --EEEEEECCCCCSSCC-------HHHHHHHHHCSEEEEEEETTT
T ss_pred --eeEEEEECcCCcchH-------HHHHHHHHHCCEEEEEECCCC
Confidence 579999999996532 356788899999999999864
No 180
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=116.62 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.4
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcc
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA 82 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~ 82 (423)
....++|+|||.+|+|||||+|+|.+....
T Consensus 34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~ 63 (361)
T 2qag_A 34 KGFEFTLMVVGESGLGKSTLINSLFLTDLY 63 (361)
T ss_dssp HCCEECEEECCCTTSCHHHHHHHHTTCCC-
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHhCCCCC
Confidence 344589999999999999999999865443
No 181
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.08 E-value=9.3e-11 Score=113.56 Aligned_cols=63 Identities=32% Similarity=0.422 Sum_probs=40.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVK 133 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~ 133 (423)
...++|+++|.||||||||+|+|+|...+.+++.|++|++...-. ++ ..+.++||||+..
T Consensus 118 ~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~--~~------------------~~~~l~DtpG~~~ 177 (282)
T 1puj_A 118 PRAIRALIIGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK--VG------------------KELELLDTPGILW 177 (282)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTSCCC------------CCEE--ET------------------TTEEEEECCCCCC
T ss_pred CCCceEEEEecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEE--eC------------------CCEEEEECcCcCC
Confidence 345899999999999999999999888899999999998875322 21 3599999999976
Q ss_pred CCC
Q 014539 134 GAS 136 (423)
Q Consensus 134 ~~~ 136 (423)
+..
T Consensus 178 ~~~ 180 (282)
T 1puj_A 178 PKF 180 (282)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 182
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.05 E-value=9.8e-10 Score=116.78 Aligned_cols=88 Identities=17% Similarity=0.171 Sum_probs=50.2
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceec--------------CCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs--------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
.+|+|+|.+|+|||||+++|+........ ...+.|+......+.+.+. .-....
T Consensus 5 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~------------~g~~~~ 72 (599)
T 3cb4_D 5 RNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKAS------------DGETYQ 72 (599)
T ss_dssp EEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECT------------TSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecC------------CCCeEE
Confidence 57999999999999999999853222111 0123444443333333210 000246
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||... +.......++.||++++|+|+++
T Consensus 73 l~liDTPGh~d-------F~~ev~~~l~~aD~aILVVDa~~ 106 (599)
T 3cb4_D 73 LNFIDTPGHVD-------FSYEVSRSLAACEGALLVVDAGQ 106 (599)
T ss_dssp EEEEECCCCGG-------GHHHHHHHHHHCSEEEEEEETTT
T ss_pred EEEEECCCchH-------HHHHHHHHHHHCCEEEEEEECCC
Confidence 89999999843 34456778899999999999864
No 183
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.04 E-value=1.6e-10 Score=116.00 Aligned_cols=86 Identities=20% Similarity=0.271 Sum_probs=62.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC------cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG------KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIA 129 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~------~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtp 129 (423)
..+|+++|.||||||||+|+|++.. .+.++++|+||++.+...+ + ..+.++|||
T Consensus 160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~--~------------------~~~~liDtP 219 (368)
T 3h2y_A 160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPL--D------------------EESSLYDTP 219 (368)
T ss_dssp TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEES--S------------------SSCEEEECC
T ss_pred cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEe--c------------------CCeEEEeCC
Confidence 4689999999999999999999742 4568999999998776543 2 238999999
Q ss_pred CCcCCCCcccchhhHHhhh---hhhcceEEEEEec
Q 014539 130 GLVKGASQGEGLGNKFLSH---IREVDSILQVVRC 161 (423)
Q Consensus 130 Gl~~~~~~~~~l~~~~l~~---ir~aD~il~Vvd~ 161 (423)
|+.......+.+....+.. .++.+.++++++.
T Consensus 220 G~~~~~~~~~~l~~~~l~~~~~~~~i~~~~~~l~~ 254 (368)
T 3h2y_A 220 GIINHHQMAHYVGKQSLKLITPTKEIKPMVFQLNE 254 (368)
T ss_dssp CBCCTTSGGGGSCHHHHHHHSCSSCCCCEEEEECT
T ss_pred CcCcHHHHHHHhhHHHHHHhccccccCceEEEEcC
Confidence 9987654445555555554 4677889999885
No 184
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.03 E-value=2.5e-10 Score=102.41 Aligned_cols=82 Identities=21% Similarity=0.262 Sum_probs=51.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcce--ecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQ--AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~--vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
...++|+++|.+|||||||+|+|++..... .+..|.+|.+. . ...+.+|||||.
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~-------~-----------------~~~~~l~Dt~G~ 101 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY-------D-----------------GSGVTLVDFPGH 101 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC-------C-----------------CTTCSEEEETTC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee-------c-----------------CCeEEEEECCCC
Confidence 345899999999999999999999654221 12233333221 1 145899999999
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..... .+...+...+..||++++|+|++
T Consensus 102 ~~~~~---~~~~~~~~~~~~~~~~i~v~d~~ 129 (193)
T 2ged_A 102 VKLRY---KLSDYLKTRAKFVKGLIFMVDST 129 (193)
T ss_dssp CBSSC---CHHHHHHHHGGGEEEEEEEEETT
T ss_pred chHHH---HHHHHHHhhcccCCEEEEEEECC
Confidence 65433 12223334456699999999975
No 185
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.01 E-value=2.7e-10 Score=120.11 Aligned_cols=106 Identities=16% Similarity=0.231 Sum_probs=65.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcc--eecCCCCccccceEEEEecC------Ccc--------chhhc--------
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEPNVGIVAVP------DPR--------LHVLS-------- 110 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~--~vs~~p~tT~~~~~~~~~~~------~~r--------~~~l~-------- 110 (423)
..++|+|+|.||||||||+|+|+|...+ .+++.|+||+. .++..-+ +.. +..|.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~--~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~ 141 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCF--VAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN 141 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSE--EEEECCSSSEEECCC------------------CCCT
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceE--EEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence 3479999999999999999999976654 68888988652 2222111 100 00010
Q ss_pred ---cccccccccCceEEEEecCCCcCCCCc--ccc--hhhHHhhhhhhcceEEEEEeccC
Q 014539 111 ---GLSKSQKAVPASVEFVDIAGLVKGASQ--GEG--LGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 111 ---~~~~~~~~~~~~i~lvDtpGl~~~~~~--~~~--l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+..|.... .++.||||||+..+... ... +.......++.||++++|+|+.+
T Consensus 142 ~~~~~~~~~~ll-~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~ 200 (550)
T 2qpt_A 142 RFMCAQLPNQVL-ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHK 200 (550)
T ss_dssp TEEEEECCCHHH-HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTS
T ss_pred cceEEecccccc-CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCc
Confidence 001111100 36899999999753321 222 33455677899999999999965
No 186
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.00 E-value=1.3e-09 Score=115.65 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=52.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceec--------------CCCCccccceEEEEecCCccchhhccccccccccCce
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAA--------------NFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPAS 122 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs--------------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~ 122 (423)
.+|+|+|.+|+|||||+++|+........ ...+.|+......+.+.. ..-....
T Consensus 7 rnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~------------~dg~~~~ 74 (600)
T 2ywe_A 7 RNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKA------------KDGNTYK 74 (600)
T ss_dssp EEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEEC------------TTSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEc------------CCCCeEE
Confidence 58999999999999999999842211110 012334433333332211 0001146
Q ss_pred EEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 123 VEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 123 i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
+.||||||... +.......++.||++++|+|+++
T Consensus 75 inliDTPGh~d-------F~~ev~r~l~~aD~aILVVDa~~ 108 (600)
T 2ywe_A 75 LHLIDTPGHVD-------FSYEVSRALAACEGALLLIDASQ 108 (600)
T ss_dssp EEEECCCCSGG-------GHHHHHHHHHTCSEEEEEEETTT
T ss_pred EEEEECCCcHh-------HHHHHHHHHHhCCEEEEEEECCC
Confidence 88999999854 33456677899999999999864
No 187
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.98 E-value=4.4e-09 Score=113.75 Aligned_cols=84 Identities=18% Similarity=0.174 Sum_probs=55.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcc-----eec------C------CCCccccceEEEEecCCccchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-----QAA------N------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~-----~vs------~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~ 118 (423)
..+|+|+|.+|+|||||+|+|+..... .+. + ..+.|+......+...+
T Consensus 12 ~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~--------------- 76 (691)
T 1dar_A 12 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKD--------------- 76 (691)
T ss_dssp EEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETT---------------
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECC---------------
Confidence 468999999999999999999832111 111 1 23455555444444433
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||... +...+...++.||++++|+|+.+
T Consensus 77 --~~i~liDTPG~~d-------f~~~~~~~l~~aD~~ilVvDa~~ 112 (691)
T 1dar_A 77 --HRINIIDTPGHVD-------FTIEVERSMRVLDGAIVVFDSSQ 112 (691)
T ss_dssp --EEEEEECCCSSTT-------CHHHHHHHHHHCSEEEEEEETTT
T ss_pred --eEEEEEECcCccc-------hHHHHHHHHHHCCEEEEEEECCC
Confidence 5799999999854 33467788999999999999864
No 188
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.96 E-value=3.6e-09 Score=111.00 Aligned_cols=84 Identities=21% Similarity=0.240 Sum_probs=55.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcce---------------ec------CCCCccccceEEEEecCCccchhhccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQ---------------AA------NFPFCTIEPNVGIVAVPDPRLHVLSGLSK 114 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~---------------vs------~~p~tT~~~~~~~~~~~~~r~~~l~~~~~ 114 (423)
..+|+|+|.+|+|||||+|+|++..... +. ...+.|+......+...+
T Consensus 13 ~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~----------- 81 (529)
T 2h5e_A 13 RRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHD----------- 81 (529)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETT-----------
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECC-----------
Confidence 4789999999999999999999532211 00 012233333333333322
Q ss_pred cccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 115 SQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 115 ~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||..... ......++.||++++|+|+.+
T Consensus 82 ------~~i~liDTPG~~df~-------~~~~~~l~~aD~~IlVvDa~~ 117 (529)
T 2h5e_A 82 ------CLVNLLDTPGHEDFS-------EDTYRTLTAVDCCLMVIDAAK 117 (529)
T ss_dssp ------EEEEEECCCCSTTCC-------HHHHHGGGGCSEEEEEEETTT
T ss_pred ------eEEEEEECCCChhHH-------HHHHHHHHHCCEEEEEEeCCc
Confidence 569999999985433 356778899999999999864
No 189
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.95 E-value=2.4e-09 Score=119.90 Aligned_cols=85 Identities=19% Similarity=0.205 Sum_probs=53.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCc----ce-----------ecCCCCccccceEEEEecCCccchhhcccccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGK----AQ-----------AANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~----~~-----------vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
..++|+++|.+|+|||||+|+|++... +. .....+.|++.....+...
T Consensus 295 ~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~----------------- 357 (1289)
T 3avx_A 295 PHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTP----------------- 357 (1289)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECS-----------------
T ss_pred CeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCC-----------------
Confidence 347999999999999999999995311 00 0012233433322222211
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...+.||||||..+ +.......++.+|++|+|+|+.+
T Consensus 358 ~~kI~IIDTPGHed-------F~~~mi~gas~AD~aILVVDAtd 394 (1289)
T 3avx_A 358 TRHYAHVDCPGHAD-------YVKNMITGAAQMDGAILVVAATD 394 (1289)
T ss_dssp SCEEEEEECCCHHH-------HHHHHHHTSCCCSEEEEEEETTT
T ss_pred CEEEEEEECCChHH-------HHHHHHHHHhhCCEEEEEEcCCc
Confidence 25699999999842 33455667889999999999864
No 190
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=98.93 E-value=2.5e-09 Score=105.39 Aligned_cols=84 Identities=13% Similarity=0.207 Sum_probs=54.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCCc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGASQ 137 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~ 137 (423)
||.++|.+|||||||++.+.++...........|+......+ .. ...+++|||||..+....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~~----------------~v~LqIWDTAGQErf~~~ 62 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--ST----------------LIDLAVMELPGQLNYFEP 62 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--CS----------------SSCEEEEECCSCSSSCCC
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--cc----------------EEEEEEEECCCchhccch
Confidence 689999999999999999884322111112233443333322 10 146999999999765320
Q ss_pred ccchhhHHhhhhhhcceEEEEEeccC
Q 014539 138 GEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 138 ~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
.+ ....++|+|+++++|+|+.+
T Consensus 63 --~l--~~~~yyr~a~~~IlV~Ditd 84 (331)
T 3r7w_B 63 --SY--DSERLFKSVGALVYVIDSQD 84 (331)
T ss_dssp --SH--HHHHHHTTCSEEEEECCCSS
T ss_pred --hh--hhhhhccCCCEEEEEEECCc
Confidence 01 23466899999999999753
No 191
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.92 E-value=4.5e-09 Score=111.69 Aligned_cols=97 Identities=16% Similarity=0.117 Sum_probs=55.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCC-CccccceEEEEecCCccchhhcc-cccc--ccccCceEEEEecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP-FCTIEPNVGIVAVPDPRLHVLSG-LSKS--QKAVPASVEFVDIAGL 131 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p-~tT~~~~~~~~~~~~~r~~~l~~-~~~~--~~~~~~~i~lvDtpGl 131 (423)
.++|+|+|.+|+|||||+|+|++.... ...| +.|.+.....++... ...... +... ......++.||||||.
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~--~~e~ggiT~~ig~~~~~~~~--~~~~~~~~~~~~~v~~~~~~i~liDTPGh 80 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVA--SREAGGITQHIGATEIPMDV--IEGICGDFLKKFSIRETLPGLFFIDTPGH 80 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHS--CC----CCCBTTEEEEEHHH--HHHHSCGGGGGCGGGGTCCEEEEECCCTT
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCc--cccCCceecccCeEEEeech--hhhhccccccccccccccCCEEEEECCCc
Confidence 479999999999999999999954321 2223 344332222222110 000000 0000 0011125999999998
Q ss_pred cCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 132 VKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 132 ~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...... ....++.||++++|+|+.+
T Consensus 81 e~F~~~-------~~r~~~~aD~aILVvDa~~ 105 (594)
T 1g7s_A 81 EAFTTL-------RKRGGALADLAILIVDINE 105 (594)
T ss_dssp SCCTTS-------BCSSSBSCSEEEEEEETTT
T ss_pred HHHHHH-------HHHHHhhCCEEEEEEECCC
Confidence 665442 1234678999999999864
No 192
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.90 E-value=2.1e-09 Score=107.13 Aligned_cols=158 Identities=18% Similarity=0.160 Sum_probs=80.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh------cCcceecCCCCccc-----------------cceEEEEecCCccc----
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTI-----------------EPNVGIVAVPDPRL---- 106 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg------~~~~~vs~~p~tT~-----------------~~~~~~~~~~~~r~---- 106 (423)
.....|+|+|.||||||||+|+|+. ...+.+...|.++. ++...+...+....
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~ 156 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV 156 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence 3457899999999999999999973 33344444454443 11111111111000
Q ss_pred -----hhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCcc------------eee
Q 014539 107 -----HVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDND------------IVH 169 (423)
Q Consensus 107 -----~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~~------------~~~ 169 (423)
+.+ ..+ ......++||||||+.. .....++.||++++|+|+...+. ...
T Consensus 157 ~~~t~d~i-~~~---~~~~~~~iiiDTpGi~~----------~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~~~~~p~iv 222 (355)
T 3p32_A 157 TRATRETV-VLL---EAAGFDVILIETVGVGQ----------SEVAVANMVDTFVLLTLARTGDQLQGIKKGVLELADIV 222 (355)
T ss_dssp HHHHHHHH-HHH---HHTTCCEEEEEECSCSS----------HHHHHHTTCSEEEEEEESSTTCTTTTCCTTSGGGCSEE
T ss_pred hHHHHHHH-HHH---hhCCCCEEEEeCCCCCc----------HHHHHHHhCCEEEEEECCCCCccHHHHHHhHhhcCCEE
Confidence 000 000 11235699999999732 22233588999999999765432 122
Q ss_pred ecccccCCcchHHHhhhhccCcHHHHHHHHHHhhh------ccccchhhhhhHHHHHHHHHHHHHHhc
Q 014539 170 VNGKVDPKSDVDVINLELVFSDLDQIEKRMEKLKK------GKAKDSQSKLKDAEKAALEKIQQALMD 231 (423)
Q Consensus 170 ~~~~~dp~~d~~~i~~El~l~d~~~~e~~~~~~~~------~~~~~~sa~~~~~~~~ll~~i~~~L~~ 231 (423)
+.|+.|.......- .....+.+.+..... ...-..||+++.++.++++.+.+.++.
T Consensus 223 VlNK~Dl~~~~~~~------~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 223 VVNKADGEHHKEAR------LAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp EEECCCGGGHHHHH------HHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred EEECCCCcChhHHH------HHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 34444433211100 000111222211110 000112578899999999999888765
No 193
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.89 E-value=2.1e-09 Score=97.74 Aligned_cols=90 Identities=17% Similarity=0.248 Sum_probs=50.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC-cceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG-KAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLV 132 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~-~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~ 132 (423)
..+.+|+|+|.+|||||||+|+|+|.. .+.+++.+++|... +.+.+.+ .+.+|||||+.
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~~------------------~~~l~Dt~G~~ 83 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVAD------------------GKRLVDLPGYG 83 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC-------------CCE--EEEEEET------------------TEEEEECCCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceee--EEEEecC------------------CEEEEECcCCc
Confidence 445789999999999999999999655 45556777777653 2222211 37899999985
Q ss_pred CCCCcc---cch---hhHHhhhhhhcceEEEEEeccC
Q 014539 133 KGASQG---EGL---GNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 133 ~~~~~~---~~l---~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...... +.+ ...++...+.+|.+++|+|+..
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~ 120 (210)
T 1pui_A 84 YAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRH 120 (210)
T ss_dssp ------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTS
T ss_pred ccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCC
Confidence 421111 111 1123333467899999999753
No 194
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=1.8e-09 Score=103.41 Aligned_cols=60 Identities=27% Similarity=0.319 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCCccchhhccccccccccCceEEEEecCCCcCCCC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVPASVEFVDIAGLVKGAS 136 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~ 136 (423)
.+|+++|.||||||||+|+|+|...+.+++.|++|+....- .++ ..+.+|||||+..+..
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~~------------------~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGAQPGITKGIQWF--SLE------------------NGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC----------CCSCEE--ECT------------------TSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCCCCCCccceEEE--EeC------------------CCEEEEECCCcccCcC
Confidence 59999999999999999999987777889999999876432 221 3489999999986543
No 195
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=98.79 E-value=7.1e-09 Score=109.76 Aligned_cols=66 Identities=26% Similarity=0.301 Sum_probs=47.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEec--CCccchhhccccccccccCceEEEEecCCC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAV--PDPRLHVLSGLSKSQKAVPASVEFVDIAGL 131 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~--~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl 131 (423)
.....|+|+|.||||||||+|+|+|...+. +.+++|++.+.|++.+ +.+. .....+.|+||||+
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~--~~~~tt~~~T~gi~~~~~~~~~------------~~~~~i~LiDTpGi 101 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGF--SLGSTVQSHTKGIWMWCVPHPK------------KPGHILVLLDTEGL 101 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCS--CCCCSSSCCCCSEEEEEEECSS------------STTCEEEEEEECCB
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCcc--ccCCCCCCceeEEEEeeccccc------------CCCceEEEecCCCc
Confidence 344789999999999999999999765432 6788888777776532 1000 01256999999999
Q ss_pred cC
Q 014539 132 VK 133 (423)
Q Consensus 132 ~~ 133 (423)
..
T Consensus 102 ~~ 103 (592)
T 1f5n_A 102 GD 103 (592)
T ss_dssp CC
T ss_pred Cc
Confidence 64
No 196
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.77 E-value=9e-09 Score=102.09 Aligned_cols=101 Identities=24% Similarity=0.198 Sum_probs=55.4
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh------cCcceecCCCCccccc-----------------eEEEEecCC-----cc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCTIEP-----------------NVGIVAVPD-----PR 105 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg------~~~~~vs~~p~tT~~~-----------------~~~~~~~~~-----~r 105 (423)
..+..|+++|.||+|||||+|+|++ ...+.++..|++|... +..+...+. ..
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~ 133 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA 133 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence 4567899999999999999999974 4455666677766421 111111110 00
Q ss_pred chhhccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 106 LHVLSGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 106 ~~~l~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
...+.+....-.....++.||||||+.... ....+.||++++|+|++..
T Consensus 134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~----------~~~~~~aD~vl~Vvd~~~~ 182 (341)
T 2p67_A 134 SQRARELMLLCEAAGYDVVIVETVGVGQSE----------TEVARMVDCFISLQIAGGG 182 (341)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEEEECCTTHH----------HHHHTTCSEEEEEECC---
T ss_pred HHHHHHHHHHhhccCCCEEEEeCCCccchH----------HHHHHhCCEEEEEEeCCcc
Confidence 000000000000123579999999985321 1135899999999998643
No 197
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.75 E-value=1.7e-07 Score=100.89 Aligned_cols=85 Identities=20% Similarity=0.241 Sum_probs=57.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce-----e------cC------CCCccccceEEEEecCCccchhhcccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-----A------AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----v------s~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~ 117 (423)
...+|+|+|.+|+|||||+++|++..... + .+ ..+.|..+....+...+
T Consensus 8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~-------------- 73 (665)
T 2dy1_A 8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRG-------------- 73 (665)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETT--------------
T ss_pred CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCC--------------
Confidence 34689999999999999999999543221 0 00 11334444333333222
Q ss_pred ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.||||||... +.......++.||++++|+|+.+
T Consensus 74 ---~~~nliDTpG~~~-------f~~~~~~~l~~ad~~ilVvD~~~ 109 (665)
T 2dy1_A 74 ---HRVFLLDAPGYGD-------FVGEIRGALEAADAALVAVSAEA 109 (665)
T ss_dssp ---EEEEEEECCCSGG-------GHHHHHHHHHHCSEEEEEEETTT
T ss_pred ---EEEEEEeCCCccc-------hHHHHHHHHhhcCcEEEEEcCCc
Confidence 5689999999843 34567888999999999999753
No 198
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.72 E-value=3.9e-08 Score=95.82 Aligned_cols=47 Identities=9% Similarity=0.021 Sum_probs=26.9
Q ss_pred CcceEEeeeccccccCCCCCC--cchHHHHHHHhhcCCcEEEechhhhHhhcC
Q 014539 256 MKPIIYVANVAESDLADPGSN--PHVNEVMNLASDLQSGRVTISAQVEAELTE 306 (423)
Q Consensus 256 ~kpi~~v~N~~~~d~~~~~~~--~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~ 306 (423)
..|+++++|+.| +... .+ ...+++.++++..+++++.+||+.+ ++.+
T Consensus 155 ~~~iilV~~K~D--l~~~-~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e 203 (301)
T 2qnr_A 155 KVNIVPVIAKAD--TLTL-KERERLKKRILDEIEEHNIKIYHLPDAES-DEDE 203 (301)
T ss_dssp TSCEEEEECCGG--GSCH-HHHHHHHHHHHHHHHHTTCCCCCCC---------
T ss_pred cCCEEEEEEeCC--CCCH-HHHHHHHHHHHHHHHHcCCeEEecCCccc-cccH
Confidence 458999999994 4321 01 1235667778888889999999987 7644
No 199
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.70 E-value=1.9e-07 Score=101.12 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=58.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcce-----e------cC------CCCccccceEEEEecCCccchhhcccccccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQ-----A------AN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQK 117 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~-----v------s~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~ 117 (423)
...+|+|+|.+|+|||||+++|+...... + .+ ..+.|+......+.+.+.. ..
T Consensus 9 ~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~----------~~ 78 (704)
T 2rdo_7 9 RYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMA----------KQ 78 (704)
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCcc----------cc
Confidence 34789999999999999999997322110 1 11 1233443333333332200 00
Q ss_pred ccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 118 AVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 118 ~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
-....+.||||||.... .......++.||++|+|+|+++
T Consensus 79 ~~~~~i~liDTPG~~df-------~~~~~~~l~~aD~aIlVvDa~~ 117 (704)
T 2rdo_7 79 YEPHRINIIDTPGHVDF-------TIEVERSMRVLDGAVMVYCAVG 117 (704)
T ss_pred CCceeEEEEeCCCccch-------HHHHHHHHHHCCEEEEEEeCCC
Confidence 01256999999998643 2356778899999999999864
No 200
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.68 E-value=5.9e-08 Score=88.99 Aligned_cols=38 Identities=16% Similarity=0.165 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc-----CcceecCCCCccc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN-----GKAQAANFPFCTI 92 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~-----~~~~vs~~p~tT~ 92 (423)
..+.|+++|.||||||||+|+|++. ..+.+...|++|.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~ 71 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKA 71 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCch
Confidence 3478999999999999999999954 2344555555543
No 201
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=98.65 E-value=2.8e-08 Score=77.26 Aligned_cols=60 Identities=27% Similarity=0.248 Sum_probs=51.1
Q ss_pred CEEEecCCCCCcceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEE
Q 014539 339 LRTYFTSGEKETKAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVML 418 (423)
Q Consensus 339 li~~fT~g~~e~raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~ 418 (423)
-|.+|| |+. +...+++|+|+.|+|..||+++.+.++.|.|- |+ .++.+|.+++||+|+
T Consensus 7 ~i~v~t--P~G-~~~~lp~GaT~~D~A~~Ih~~lg~~~v~AkVN-----------------G~--~v~L~~~L~~gd~Ve 64 (78)
T 3hvz_A 7 EVFVFT--PKG-DVISLPIGSTVIDFAYAIHSAVGNRMIGAKVD-----------------GR--IVPIDYKVKTGEIID 64 (78)
T ss_dssp EEEEEC--TTS-CEEEEETTCBHHHHHHHHCHHHHHTEEEEEET-----------------TE--EECTTCBCCTTCBEE
T ss_pred eEEEEC--CCC-CEEEecCCCCHHHHHHHhhhhhhcceEEEEEC-----------------CE--EcCCCcccCCCCEEE
Confidence 367777 332 66789999999999999999999999999973 43 699999999999999
Q ss_pred EE
Q 014539 419 FR 420 (423)
Q Consensus 419 ~~ 420 (423)
|-
T Consensus 65 Ii 66 (78)
T 3hvz_A 65 VL 66 (78)
T ss_dssp EE
T ss_pred EE
Confidence 85
No 202
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.64 E-value=5.2e-08 Score=96.51 Aligned_cols=38 Identities=39% Similarity=0.497 Sum_probs=29.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh------cCcceecCCCCcc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE------NGKAQAANFPFCT 91 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg------~~~~~vs~~p~tT 91 (423)
..+..|+|+|.||||||||+|+|+| +.....+..|+++
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~ 96 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSST 96 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCccc
Confidence 4567899999999999999999984 4455555555544
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.58 E-value=5.6e-08 Score=91.59 Aligned_cols=105 Identities=12% Similarity=0.045 Sum_probs=58.6
Q ss_pred CcEEEEEecCCCCccHHHHHHh-----hcCcceecCCCCccccceEEEEecCC-ccchhh--------------------
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV-----ENGKAQAANFPFCTIEPNVGIVAVPD-PRLHVL-------------------- 109 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt-----g~~~~~vs~~p~tT~~~~~~~~~~~~-~r~~~l-------------------- 109 (423)
...+.++|++|||||||++.|+ |.....+...|+.+.-+........+ ...+..
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMREGYGPNGAIVESYDRLME 93 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCSSCSCCSSCCSEEGGGTCCHHHHHTTTCCHHHHHHHHHHHHHT
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccccCCCCCCChhhcccHHHHhhccCCCCCcEEecHHHHhh
Confidence 4678899999999999999998 66777777666543211000000000 000000
Q ss_pred -----ccccccccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 110 -----SGLSKSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 110 -----~~~~~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
......-+ ....++||||||....... ..++..+...+.+ +++++|+|++.
T Consensus 94 ~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~-~~l~~~~~~~~~~-~~iv~vvD~~~ 149 (262)
T 1yrb_A 94 KFNEYLNKILRLE-KENDYVLIDTPGQMETFLF-HEFGVRLMENLPY-PLVVYISDPEI 149 (262)
T ss_dssp THHHHHHHHHHHH-HHCSEEEEECCSSHHHHHH-SHHHHHHHHTSSS-CEEEEEECGGG
T ss_pred hHHHHHHHHHHHh-hcCCEEEEeCCCccchhhh-hhhHHHHHHHHhh-ceEEeccchhh
Confidence 00000000 0136999999998643211 1223445556677 99999999753
No 204
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=98.56 E-value=5.1e-08 Score=107.64 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=59.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCC---------------CCccccceEEEEecCCc--cchhhccccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANF---------------PFCTIEPNVGIVAVPDP--RLHVLSGLSKSQKA 118 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~---------------p~tT~~~~~~~~~~~~~--r~~~l~~~~~~~~~ 118 (423)
..+|+|+|.+|+|||||+|+|++......+.. ++.|+......+.+... ..+.+.... .-
T Consensus 19 ~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~---~~ 95 (842)
T 1n0u_A 19 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKT---DG 95 (842)
T ss_dssp EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCC---CS
T ss_pred ccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccc---cC
Confidence 36899999999999999999996433332222 23344333333222100 000000000 00
Q ss_pred cCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 119 VPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 119 ~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
....+.||||||..... ......++.||++++|+|+.+.
T Consensus 96 ~~~~i~liDTPG~~df~-------~~~~~~l~~aD~ailVvDa~~g 134 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFS-------SEVTAALRVTDGALVVVDTIEG 134 (842)
T ss_dssp SEEEEEEECCCCCCSSC-------HHHHHHHHTCSEEEEEEETTTB
T ss_pred CCceEEEEECcCchhhH-------HHHHHHHHhCCEEEEEEeCCCC
Confidence 12569999999996543 3567788999999999999764
No 205
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.51 E-value=1.4e-07 Score=96.01 Aligned_cols=28 Identities=29% Similarity=0.408 Sum_probs=24.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcCc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENGK 81 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~~ 81 (423)
.-.++|+|||.+|||||||+|+|+|...
T Consensus 29 ~vsf~I~lvG~sGaGKSTLln~L~g~~~ 56 (418)
T 2qag_C 29 GFEFTLMVVGESGLGKSTLINSLFLTDL 56 (418)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred CCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4457899999999999999999996543
No 206
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.33 E-value=7.8e-07 Score=90.56 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
++++|||.+|+|||||+|+|+|..
T Consensus 43 ~~vaLvG~nGaGKSTLln~L~G~~ 66 (427)
T 2qag_B 43 FNILCVGETGLGKSTLMDTLFNTK 66 (427)
T ss_dssp EEEEEECSTTSSSHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCcc
Confidence 459999999999999999999753
No 207
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.29 E-value=4.9e-07 Score=92.67 Aligned_cols=72 Identities=17% Similarity=0.121 Sum_probs=46.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc---------------CcceecCCCCccccceEEEEecCCccchhhccccccccccC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN---------------GKAQAANFPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~---------------~~~~vs~~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
..-|+|+|.||+|||||+|.|.|. .....+.. .||...+.|++....+-.. -.|. ...
T Consensus 67 v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~-~t~~~~T~GIw~~~~p~~~-----~~~~-~~~ 139 (447)
T 3q5d_A 67 VVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWR-GGSERETTGIQIWSEIFLI-----NKPD-GKK 139 (447)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSC-CSSCCCCCEEEEESSCEEE-----ECSS-SCE
T ss_pred eEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCC-CCCCCceeEEEEecCcccc-----ccCC-CCc
Confidence 357999999999999999999964 22223322 3777788888654321000 0000 012
Q ss_pred ceEEEEecCCCcCC
Q 014539 121 ASVEFVDIAGLVKG 134 (423)
Q Consensus 121 ~~i~lvDtpGl~~~ 134 (423)
.+++|+||||+...
T Consensus 140 ~~vvllDTeG~~~~ 153 (447)
T 3q5d_A 140 VAVLLMDTQGTFDS 153 (447)
T ss_dssp EEEEEEEEECCCSS
T ss_pred ceEEEEcCCccccc
Confidence 57999999999643
No 208
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.20 E-value=7.8e-06 Score=78.29 Aligned_cols=25 Identities=32% Similarity=0.486 Sum_probs=22.4
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGK 81 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~ 81 (423)
+.++|||.+|+|||||+|.|+|...
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 6899999999999999999997543
No 209
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.11 E-value=2.7e-06 Score=88.52 Aligned_cols=102 Identities=17% Similarity=0.126 Sum_probs=56.1
Q ss_pred CcEEEEEecCCCCccHHHHHHh------hcCcceecCCCCcccc----------ceEEEEecCCc-c-c----hhhcccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV------ENGKAQAANFPFCTIE----------PNVGIVAVPDP-R-L----HVLSGLS 113 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt------g~~~~~vs~~p~tT~~----------~~~~~~~~~~~-r-~----~~l~~~~ 113 (423)
...|+++|.|||||||++|+|+ |.....++.-++.... .....+..... . . +.+..+
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~- 179 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF- 179 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH-
Confidence 4579999999999999999999 6666655553322110 00001111000 0 0 001111
Q ss_pred ccccccCceEEEEecCCCcCCCCcccchhhHHhh--hhhhcceEEEEEeccCC
Q 014539 114 KSQKAVPASVEFVDIAGLVKGASQGEGLGNKFLS--HIREVDSILQVVRCFED 164 (423)
Q Consensus 114 ~~~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~--~ir~aD~il~Vvd~~~~ 164 (423)
+.....++||||||..... ..+...... .+..+|.+++|+|+...
T Consensus 180 ---~~~~~DvvIIDTpG~~~~~---~~l~~el~~~~~~i~pd~vllVvDa~~g 226 (504)
T 2j37_W 180 ---KNENFEIIIVDTSGRHKQE---DSLFEEMLQVANAIQPDNIVYVMDASIG 226 (504)
T ss_dssp ---HHTTCCEEEEEECCCCTTC---HHHHHHHHHHHHHHCCSEEEEEEETTCC
T ss_pred ---HHCCCcEEEEeCCCCcccc---hhHHHHHHHHHhhhcCceEEEEEecccc
Confidence 0123569999999986422 122222211 12378999999999754
No 210
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.03 E-value=1.3e-05 Score=84.37 Aligned_cols=85 Identities=21% Similarity=0.226 Sum_probs=59.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcc---------------eecC------CCCccccceEEEEecCCccchhhcccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKA---------------QAAN------FPFCTIEPNVGIVAVPDPRLHVLSGLSKS 115 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~---------------~vs~------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~ 115 (423)
-.|||||...+|||||.-+|.-...+ .+.+ .-+.|+......+.+.+
T Consensus 32 RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~------------ 99 (548)
T 3vqt_A 32 RTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRD------------ 99 (548)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETT------------
T ss_pred ceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECC------------
Confidence 36999999999999999999521111 1111 22556666666666655
Q ss_pred ccccCceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 116 QKAVPASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 116 ~~~~~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
..|.|+||||.+.+.. ...+.++-||..++||||.+..
T Consensus 100 -----~~iNlIDTPGHvDF~~-------Ev~raL~~~DgAvlVvda~~GV 137 (548)
T 3vqt_A 100 -----RVVNLLDTPGHQDFSE-------DTYRVLTAVDSALVVIDAAKGV 137 (548)
T ss_dssp -----EEEEEECCCCGGGCSH-------HHHHHHHSCSEEEEEEETTTBS
T ss_pred -----EEEEEEeCCCcHHHHH-------HHHHHHHhcCceEEEeecCCCc
Confidence 6799999999976654 6788899999999999997653
No 211
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.95 E-value=3.3e-05 Score=70.62 Aligned_cols=25 Identities=20% Similarity=0.351 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..++|+++|.+|||||||+|+|+..
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 4589999999999999999999953
No 212
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.87 E-value=9.8e-06 Score=82.78 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=20.4
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|+++|.|||||||+.+.|.+
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~ 121 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLAR 121 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999995
No 213
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.81 E-value=0.00043 Score=74.95 Aligned_cols=90 Identities=18% Similarity=0.077 Sum_probs=54.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhcCcc-----eecC------------CCCccccceEEEEecCCccchhhcccccccccc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENGKA-----QAAN------------FPFCTIEPNVGIVAVPDPRLHVLSGLSKSQKAV 119 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~~~-----~vs~------------~p~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~ 119 (423)
-.|+|||...+|||||.-+|.-.... .+.. .-+.|+....-.+.+.+.+. +..
T Consensus 14 RNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~----------~~~ 83 (709)
T 4fn5_A 14 RNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRG----------QYD 83 (709)
T ss_dssp EEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTS----------CSC
T ss_pred eEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcC----------CCC
Confidence 46999999999999999998621111 1110 11233333333333222110 111
Q ss_pred CceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 120 PASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 120 ~~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
...|.|+||||.+.+.. ...+.++-||..++||||.+
T Consensus 84 ~~~iNlIDTPGHvDF~~-------Ev~~aLr~~DgavlvVDave 120 (709)
T 4fn5_A 84 NYRVNVIDTPGHVDFTI-------EVERSLRVLDGAVVVFCGTS 120 (709)
T ss_dssp CEEEEEECCCSCTTCHH-------HHHHHHHHCSEEEEEEETTT
T ss_pred CEEEEEEeCCCCcccHH-------HHHHHHHHhCeEEEEEECCC
Confidence 35799999999876543 67888999999999999854
No 214
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.66 E-value=1.2e-05 Score=78.52 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFP 88 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p 88 (423)
+-.++|+|.||||||||+|+|+|.....++..+
T Consensus 173 G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~ 205 (307)
T 1t9h_A 173 DKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 205 (307)
T ss_dssp TSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred CCEEEEECCCCCCHHHHHHHhccccccccccee
Confidence 458999999999999999999976554444444
No 215
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.63 E-value=8.3e-05 Score=75.42 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
....++|+|.+|||||||+|+|+|.
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCC
Confidence 3458999999999999999999973
No 216
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.61 E-value=1.8e-05 Score=84.72 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=56.3
Q ss_pred EEEEEecCCCCccHHHHHHhhcCcc-----eec------CCC------CccccceEEEEecCCccchhhccccccccccC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENGKA-----QAA------NFP------FCTIEPNVGIVAVPDPRLHVLSGLSKSQKAVP 120 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~~~-----~vs------~~p------~tT~~~~~~~~~~~~~r~~~l~~~~~~~~~~~ 120 (423)
.|||+|...+|||||.-+|.-.... .+. ++- +.|+......+.+.+
T Consensus 4 Ni~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~----------------- 66 (638)
T 3j25_A 4 NIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWEN----------------- 66 (638)
T ss_dssp CCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSS-----------------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECC-----------------
Confidence 5899999999999999999621111 111 110 233333322233332
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
..+.|+||||.+.+. ....+.++-||..++||||.+..
T Consensus 67 ~~iNlIDTPGH~DF~-------~Ev~raL~~~DgavlVVDa~~GV 104 (638)
T 3j25_A 67 TKVNIIDTPGHMDFL-------AEVYRSLSVLDGAILLISAKDGV 104 (638)
T ss_dssp CBCCCEECCCSSSTH-------HHHHHHHTTCSEEECCEESSCTT
T ss_pred EEEEEEECCCcHHHH-------HHHHHHHHHhCEEEEEEeCCCCC
Confidence 568999999986543 46778899999999999997653
No 217
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.49 E-value=3.9e-05 Score=76.35 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK 81 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~ 81 (423)
+-.++|+|.||||||||+|+|+|...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CCEEEEECCCCccHHHHHHHHhcccc
Confidence 35799999999999999999997554
No 218
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.40 E-value=0.00021 Score=72.99 Aligned_cols=22 Identities=23% Similarity=0.296 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+..|+++|.|||||||+++.|+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA 121 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA 121 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 219
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=97.31 E-value=0.00034 Score=74.42 Aligned_cols=23 Identities=22% Similarity=0.345 Sum_probs=21.3
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+.|+|||.+|+|||||+|+|+|-
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl 68 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGV 68 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSC
T ss_pred CeEEEECCCCChHHHHHHHHhCC
Confidence 56999999999999999999975
No 220
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.30 E-value=0.0002 Score=69.50 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=25.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPF 89 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~ 89 (423)
+-.++++|.+|||||||+|+|+ ......+....
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~ 197 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEELRTQEVSE 197 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC--
T ss_pred CcEEEEECCCCCCHHHHHHHHH-HhhCccccccc
Confidence 3578999999999999999999 66555554444
No 221
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.29 E-value=0.00015 Score=70.29 Aligned_cols=32 Identities=31% Similarity=0.429 Sum_probs=23.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANF 87 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~ 87 (423)
+-.++++|.+|||||||+|+|+|......+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i 200 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLKLRVSEV 200 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred CCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence 35789999999999999999997555444333
No 222
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=97.04 E-value=0.00085 Score=66.57 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=30.0
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCCc
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFEDN 165 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~~ 165 (423)
..+.+|||+|.... ...+..+.++++++|+|+|+++.+
T Consensus 193 ~~l~iwDt~GQe~~-------r~~w~~yf~~a~~iIfV~dls~~d 230 (353)
T 1cip_A 193 LHFKMFDVGGQRSE-------RKKWIHCFEGVTAIIFCVALSDYD 230 (353)
T ss_dssp EEEEEEEECCSGGG-------GGGGGGGCTTCSEEEEEEEGGGGG
T ss_pred eeEEEEeCCCchhh-------hHHHHHHHhcCCEEEEEEECcccc
Confidence 56899999998433 335667889999999999987643
No 223
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.92 E-value=0.0011 Score=64.08 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.+|+||||+++.|.+
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~ 120 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAY 120 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45789999999999999999984
No 224
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.89 E-value=0.00035 Score=63.73 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc-ceecCCCCccccceEEE
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~-~~vs~~p~tT~~~~~~~ 98 (423)
+--|+|+|.+|||||||+|+|.+... ......+.||+.|..|.
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE 62 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE 62 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe
Confidence 34689999999999999999996543 35567788998887654
No 225
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.89 E-value=0.0012 Score=67.20 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.-|+++|.|||||||+++.|+
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA 118 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA 118 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4578999999999999999998
No 226
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.82 E-value=0.00065 Score=60.27 Aligned_cols=42 Identities=19% Similarity=0.260 Sum_probs=29.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCc-ceecCCCCccccceEE
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVG 97 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~-~~vs~~p~tT~~~~~~ 97 (423)
+-.++|+|.+|||||||++.|.+... ......+.+|+.|..+
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~g 47 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD 47 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCcc
Confidence 35799999999999999999996432 1334456677766554
No 227
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.40 E-value=0.0024 Score=65.08 Aligned_cols=105 Identities=16% Similarity=0.115 Sum_probs=54.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh-------hcCcceecCCCCcccc----------ceEEEEecCCc--cchhhccccccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV-------ENGKAQAANFPFCTIE----------PNVGIVAVPDP--RLHVLSGLSKSQ 116 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt-------g~~~~~vs~~p~tT~~----------~~~~~~~~~~~--r~~~l~~~~~~~ 116 (423)
...|+++|.+||||||+...|. |.....+..-|+.+.. .+...+..+.. ..+.+......-
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~~ 179 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKEA 179 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998 4444444444433210 01111111100 000000011111
Q ss_pred cccCceEEEEecCCCcCCCCcccchhhHH--hhhhhhcceEEEEEeccC
Q 014539 117 KAVPASVEFVDIAGLVKGASQGEGLGNKF--LSHIREVDSILQVVRCFE 163 (423)
Q Consensus 117 ~~~~~~i~lvDtpGl~~~~~~~~~l~~~~--l~~ir~aD~il~Vvd~~~ 163 (423)
+.....++|+||||..... ..+.+.. ...+..+|.+++|+|+..
T Consensus 180 ~~~~~D~VIIDTpG~l~~~---~~l~~~L~~~~~~~~p~~vllVvda~~ 225 (433)
T 2xxa_A 180 KLKFYDVLLVDTAGRLHVD---EAMMDEIKQVHASINPVETLFVVDAMT 225 (433)
T ss_dssp HHTTCSEEEEECCCCCTTC---HHHHHHHHHHHHHSCCSEEEEEEETTB
T ss_pred HhCCCCEEEEECCCccccc---HHHHHHHHHHHHhhcCcceeEEeecch
Confidence 1113569999999974321 1222211 233457899999999864
No 228
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.34 E-value=0.0014 Score=58.47 Aligned_cols=24 Identities=42% Similarity=0.607 Sum_probs=21.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhcC
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
++++|+|.+|+|||||++.|+|.-
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999643
No 229
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=96.27 E-value=0.0023 Score=59.01 Aligned_cols=43 Identities=16% Similarity=0.225 Sum_probs=29.9
Q ss_pred cccCCcEEEEEecCCCCccHHHHHHhhcCcc--eecCCCCccccc
Q 014539 52 KISMSLRAGIVGLPNVGKSTLFNAVVENGKA--QAANFPFCTIEP 94 (423)
Q Consensus 52 ~~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~--~vs~~p~tT~~~ 94 (423)
.+..+--++|+|.+|||||||++.|+|.... .....+.+|+.+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~ 56 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQP 56 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCC
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCC
Confidence 3344567999999999999999999975432 334556666554
No 230
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.24 E-value=0.001 Score=60.08 Aligned_cols=23 Identities=26% Similarity=0.380 Sum_probs=20.9
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..++|+|.+|||||||++.|+|.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~ 27 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQE 27 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 46999999999999999999963
No 231
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.17 E-value=0.003 Score=57.29 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=29.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcc-eecCCCCccccce
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPN 95 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~-~vs~~p~tT~~~~ 95 (423)
+.-|+|+|.+|||||||++.|++.... .....+.+|+.+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~ 48 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPR 48 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCC
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCc
Confidence 456999999999999999999954332 3444556666554
No 232
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=96.14 E-value=0.0045 Score=61.52 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=25.8
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccCC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFED 164 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~~ 164 (423)
..+.+|||||...... .+...+++++++|+|+|+++-
T Consensus 201 ~~l~i~Dt~Gq~~~r~-------~w~~~f~~~~~iIfv~dls~~ 237 (362)
T 1zcb_A 201 VPFKMVDVGGQRSERK-------RWFECFDSVTSILFLVSSSEF 237 (362)
T ss_dssp EEEEEEEECC--------------CTTSCTTCCEEEEEEETTCT
T ss_pred eEEEEEeccchhhhhh-------hHHHHhCCCCEEEEEEECccc
Confidence 5689999999954332 455677899999999998764
No 233
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.10 E-value=0.0025 Score=57.46 Aligned_cols=43 Identities=19% Similarity=0.156 Sum_probs=30.1
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcCcc-eecCCCCccccce
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENGKA-QAANFPFCTIEPN 95 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~~~-~vs~~p~tT~~~~ 95 (423)
+..+.-|+|+|.||||||||.+.|...... .....+.||+.+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~ 52 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKR 52 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCC
Confidence 344567999999999999999999843321 2233456776654
No 234
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=96.07 E-value=0.011 Score=57.91 Aligned_cols=36 Identities=25% Similarity=0.333 Sum_probs=28.9
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.+|||+|... ....+..+.++++++++|+|.++
T Consensus 167 v~l~iwDtgGQe~-------~R~~w~~yf~~~~~iIfV~dls~ 202 (327)
T 3ohm_A 167 VIFRMVDVGGQRS-------ERRKWIHCFENVTSIMFLVALSE 202 (327)
T ss_dssp EEEEEEEECCSHH-------HHTTGGGGCSSCSEEEEEEEGGG
T ss_pred eeeEEEEcCCchh-------HHHHHHHHhCCCCEEEEEEECcc
Confidence 5689999999843 33356678899999999999874
No 235
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.06 E-value=0.0017 Score=57.85 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=20.5
Q ss_pred EEEEEecCCCCccHHHHHHhhcC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
-++|+|.+|||||||++.|+|..
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 38999999999999999999643
No 236
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.00 E-value=0.014 Score=56.25 Aligned_cols=23 Identities=22% Similarity=0.261 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.|+++|.+|+||||+++.|++
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~ 127 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAA 127 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.93 E-value=0.0028 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.206 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
|+..|+|+|.|++|||||.+.|.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHH
Confidence 4567999999999999999999953
No 238
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=95.93 E-value=0.003 Score=61.02 Aligned_cols=79 Identities=22% Similarity=0.170 Sum_probs=46.5
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHHHhhcC--CcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHH
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQ--SGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRS 332 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~--~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~ 332 (423)
...|+++++||. |+.+. ...+++++++...+ .+++++||+.+.++.++-...+.++..-+|-.++|--.+++.
T Consensus 114 ~~~piilv~NK~--DL~~~---~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~ 188 (301)
T 1u0l_A 114 NELETVMVINKM--DLYDE---DDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNA 188 (301)
T ss_dssp TTCEEEEEECCG--GGCCH---HHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEeHH--HcCCc---hhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHH
Confidence 367999999999 45321 11234555554444 789999999998885441111111122344455666667777
Q ss_pred HHhhhC
Q 014539 333 TYSLLG 338 (423)
Q Consensus 333 ~~~~L~ 338 (423)
+..++.
T Consensus 189 l~g~~~ 194 (301)
T 1u0l_A 189 INPGLK 194 (301)
T ss_dssp HSTTCC
T ss_pred hccccc
Confidence 665543
No 239
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.86 E-value=0.0039 Score=56.12 Aligned_cols=40 Identities=25% Similarity=0.250 Sum_probs=31.0
Q ss_pred EEEEecCCCCccHHHHHHhhcCc-ceecCCCCccccceEEE
Q 014539 59 AGIVGLPNVGKSTLFNAVVENGK-AQAANFPFCTIEPNVGI 98 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~~~-~~vs~~p~tT~~~~~~~ 98 (423)
|.|+|++|||||||+++|..... ...-..+.||+.|-.|-
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE 44 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE 44 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC
Confidence 78999999999999999984322 24456788998876553
No 240
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.79 E-value=0.0055 Score=63.30 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.|+|+|.+|||||||++.|+|
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAg 315 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLAR 315 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHH
Confidence 45799999999999999999996
No 241
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.75 E-value=0.0049 Score=55.78 Aligned_cols=26 Identities=31% Similarity=0.374 Sum_probs=22.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..+..|+|+|.+++|||||++.|.|.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~ 45 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAA 45 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 44578999999999999999999953
No 242
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.74 E-value=0.0047 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+..|+|+|.|++|||||++.|++
T Consensus 8 ~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 8 GGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999994
No 243
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.72 E-value=0.0042 Score=60.92 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+--|+++|.+||||||+++.|+|
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag 151 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLAN 151 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 456799999999999999999996
No 244
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.69 E-value=0.011 Score=57.78 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.+|+||||++..|.+
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~ 127 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMAN 127 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34699999999999999999985
No 245
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.67 E-value=0.0057 Score=56.14 Aligned_cols=38 Identities=13% Similarity=0.147 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHh-hcCcceecCCCCcccc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV-ENGKAQAANFPFCTIE 93 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt-g~~~~~vs~~p~tT~~ 93 (423)
+.-++|+|.++||||||++.|. |.........+.+|+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~ 65 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRA 65 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----CEEECCCEESSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCC
Confidence 4579999999999999999999 7543323333334433
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.61 E-value=0.0042 Score=56.17 Aligned_cols=28 Identities=25% Similarity=0.251 Sum_probs=22.6
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
...+--++|+|.+|||||||++.|+|..
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445579999999999999999999643
No 247
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=95.56 E-value=0.021 Score=58.24 Aligned_cols=22 Identities=23% Similarity=0.347 Sum_probs=19.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
..-|+|+|.+++|||+|+|.|.
T Consensus 67 v~vvsv~G~~~~gks~l~N~ll 88 (457)
T 4ido_A 67 VVAVSVAGAFRKGKSFLMDFML 88 (457)
T ss_dssp EEEEEEEEBTTSSHHHHHHHHH
T ss_pred eEEEEEECCCCCchhHHHHHHH
Confidence 3568899999999999999765
No 248
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.54 E-value=0.0058 Score=54.50 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+.-++|+|.+|||||||++.|+|.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHHhh
Confidence 457999999999999999999964
No 249
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=95.35 E-value=0.017 Score=43.21 Aligned_cols=52 Identities=23% Similarity=0.217 Sum_probs=43.5
Q ss_pred ceEEecCCCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEEe
Q 014539 351 KAWTIRAGMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFRF 421 (423)
Q Consensus 351 raw~i~~gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~f 421 (423)
+...+++|+|+.|+|..||+++.+..+-|+| + |+ .+..++.+++||.|+|--
T Consensus 11 ~~~~~~~g~T~~dla~~i~~~l~~~~vaa~v---N--------------g~--lvdl~~~L~~~~~Veivt 62 (73)
T 2kmm_A 11 EIKRLPQGATALDFAYSLHSDLGDHCIGAKV---N--------------HK--LVPLSYVLNSGDQVEVLS 62 (73)
T ss_dssp CEEEECTTCBHHHHHHHHCSHHHHTEEEEEE---T--------------TE--ECCTTCBCCSSSBEEEEE
T ss_pred CEEEcCCCCcHHHHHHHHhhccccceEEEEE---C--------------CE--EeCCCcCcCCCCEEEEEE
Confidence 3578899999999999999999998888763 2 43 578899999999998753
No 250
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=95.35 E-value=0.074 Score=50.71 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=34.4
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhcCC
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTEL 307 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l 307 (423)
..+|.++++||. |+.+ ....+...++.++.+.+++.+||+.+.++.+|
T Consensus 49 ~~kp~ilVlNK~--DL~~---~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L 96 (282)
T 1puj_A 49 KNKPRIMLLNKA--DKAD---AAVTQQWKEHFENQGIRSLSINSVNGQGLNQI 96 (282)
T ss_dssp SSSCEEEEEECG--GGSC---HHHHHHHHHHHHTTTCCEEECCTTTCTTGGGH
T ss_pred CCCCEEEEEECc--ccCC---HHHHHHHHHHHHhcCCcEEEEECCCcccHHHH
Confidence 578999999999 4542 12334444555556788999999998887765
No 251
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.28 E-value=0.0063 Score=55.70 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=21.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+-.++|+|.+|||||||++.|+|..
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3569999999999999999999643
No 252
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.28 E-value=0.0066 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.234 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.-++|+|.|++|||||++.|++
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc
Confidence 34589999999999999999984
No 253
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.28 E-value=0.0079 Score=54.63 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+.|+|+|.|++||||+.+.|.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~ 27 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAE 27 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 254
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=95.20 E-value=0.0083 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.455 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+..|||+|.+++|||||++.|.|.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999963
No 255
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=95.16 E-value=0.0074 Score=55.68 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..|+|||||++.|+|-
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl 53 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLL 53 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 457899999999999999999953
No 256
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=95.13 E-value=0.025 Score=56.01 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=28.3
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.+|||+|..... ..+..++++++++++|+|.++
T Consensus 183 v~l~iwDtaGQe~~r-------~~~~~y~~~~~~iI~v~dis~ 218 (354)
T 2xtz_A 183 EVYRLFDVGGQRNER-------RKWIHLFEGVTAVIFCAAISE 218 (354)
T ss_dssp -EEEEEEECCSTTGG-------GGTGGGCTTEEEEEEEEEGGG
T ss_pred eeeEEEECCCchhhh-------HHHHHHhCCCCEEEEEEECcc
Confidence 569999999985433 355677899999999999864
No 257
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=95.13 E-value=0.0072 Score=56.20 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl 54 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCL 54 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999953
No 258
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=95.12 E-value=0.0094 Score=53.13 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=21.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+..|+|+|.||||||||++.|.+.
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~ 29 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFED 29 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHh
Confidence 467999999999999999999953
No 259
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=95.04 E-value=0.0098 Score=54.33 Aligned_cols=24 Identities=21% Similarity=0.029 Sum_probs=21.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..++|||||++.|+|-
T Consensus 22 Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 22 NTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999976
No 260
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=95.04 E-value=0.27 Score=48.66 Aligned_cols=111 Identities=18% Similarity=0.282 Sum_probs=62.3
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHH----HhhcCC---cEEEechhhhHhhcCCChHHHHHHHHH-----cCCC
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNL----ASDLQS---GRVTISAQVEAELTELPSEERVEYLAS-----LGVS 322 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~----~~~~~~---~~v~~Sa~~e~~i~~l~~ee~~~~l~~-----~g~~ 322 (423)
..+|+++|+||.| +... ....+++.+| +++.|. .++.+||+.+.++.+|-+ .-..++.. .|-.
T Consensus 97 ~~~piilV~NK~D--Ll~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~-~I~~~~~~~~i~~vG~~ 171 (369)
T 3ec1_A 97 ADNPILLVGNKAD--LLPR--SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVME-AINRYREGGDVYVVGCT 171 (369)
T ss_dssp TTSCEEEEEECGG--GSCT--TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHH-HHHHHHTTSCEEEECCT
T ss_pred CCCCEEEEEEChh--cCCC--ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHH-HHHhhcccCcEEEEcCC
Confidence 3789999999994 4432 2223344444 455565 689999999988865521 11112211 2445
Q ss_pred CChhhHHHHHHHhhh----CCE--EEecCCCCCcceEEecCCCChhhhhhhcch
Q 014539 323 ESGLGNLIRSTYSLL----GLR--TYFTSGEKETKAWTIRAGMTAPQAAGVIHS 370 (423)
Q Consensus 323 ~~~~~~li~~~~~~L----~li--~~fT~g~~e~raw~i~~gsta~~~A~~IHs 370 (423)
+.|-..++++++... +.. +-++--.....-..+..+.+..|..|.++.
T Consensus 172 nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~ 225 (369)
T 3ec1_A 172 NVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINH 225 (369)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCC
T ss_pred CCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcH
Confidence 677777888877662 222 222211112233445666777777777643
No 261
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.93 E-value=0.0092 Score=55.75 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-.++|+|..|+|||||++.|+|-
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl 47 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGI 47 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999953
No 262
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.90 E-value=0.011 Score=51.24 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|..-|.|+|.|++||||+.+.|..
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHh
Confidence 345689999999999999999983
No 263
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=94.89 E-value=0.012 Score=52.78 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.|++|||||++.|.+
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~ 51 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVAD 51 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 264
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=94.88 E-value=0.0096 Score=52.20 Aligned_cols=22 Identities=23% Similarity=0.203 Sum_probs=19.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+--++++|.+++|||||++.+.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 4468999999999999999866
No 265
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=94.83 E-value=0.0098 Score=56.05 Aligned_cols=25 Identities=32% Similarity=0.291 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl 56 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGF 56 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 266
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.81 E-value=0.01 Score=54.53 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..++|||||++.|+|-
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl 58 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTY 58 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 346899999999999999999954
No 267
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.81 E-value=0.013 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|+|.+++||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999984
No 268
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.80 E-value=0.012 Score=56.96 Aligned_cols=25 Identities=32% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl 149 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHF 149 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhh
Confidence 4468999999999999999999953
No 269
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.79 E-value=0.01 Score=56.20 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 31 ~Ge~~~liG~nGsGKSTLlk~l~Gl 55 (262)
T 1b0u_A 31 AGDVISIIGSSGSGKSTFLRCINFL 55 (262)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457899999999999999999953
No 270
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=94.79 E-value=0.01 Score=56.38 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl 60 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGY 60 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999953
No 271
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.79 E-value=0.011 Score=55.18 Aligned_cols=25 Identities=24% Similarity=0.239 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 51 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERF 51 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999964
No 272
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.79 E-value=0.011 Score=55.01 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAE 54 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 273
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=94.78 E-value=0.01 Score=56.68 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..|+|||||++.|+|-
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl 57 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGI 57 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999953
No 274
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.75 E-value=0.013 Score=54.38 Aligned_cols=22 Identities=41% Similarity=0.604 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+..|+|+|.||+|||||++.|+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La 48 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIA 48 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999999
No 275
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.75 E-value=0.013 Score=52.43 Aligned_cols=22 Identities=36% Similarity=0.430 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|+|.+++||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999994
No 276
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=94.73 E-value=0.012 Score=55.25 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|-
T Consensus 34 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 58 (247)
T 2ff7_A 34 QGEVIGIVGRSGSGKSTLTKLIQRF 58 (247)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999954
No 277
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.72 E-value=0.014 Score=51.82 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|..-++|+|.+|+|||||+++|.+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~ 28 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIP 28 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHH
Confidence 345799999999999999999994
No 278
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=94.70 E-value=0.011 Score=55.34 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 279
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.66 E-value=0.014 Score=56.38 Aligned_cols=79 Identities=14% Similarity=0.055 Sum_probs=48.4
Q ss_pred hCcceEEeeeccccccCCCCCCc--chHHHHHHHhhcCCcEEEechhhhHhhcCCChHHHHHHHHHcCCCCChhhHHHHH
Q 014539 255 TMKPIIYVANVAESDLADPGSNP--HVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLASLGVSESGLGNLIRS 332 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~--~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~~g~~~~~~~~li~~ 332 (423)
...|+++++||.| +.+. .. ..+++.+++++.+.+++++||+.+.++.+|-...+.+...-.|-.++|.-.+++.
T Consensus 109 ~~~~~ilV~NK~D--L~~~--~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~ 184 (302)
T 2yv5_A 109 FKVEPVIVFNKID--LLNE--EEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSR 184 (302)
T ss_dssp TTCEEEEEECCGG--GCCH--HHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHH
T ss_pred CCCCEEEEEEccc--CCCc--cccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHH
Confidence 5689999999994 4321 11 1445566666678899999999998875441110001111233345667778888
Q ss_pred HHhhhC
Q 014539 333 TYSLLG 338 (423)
Q Consensus 333 ~~~~L~ 338 (423)
+. .+.
T Consensus 185 l~-~~~ 189 (302)
T 2yv5_A 185 LT-GEE 189 (302)
T ss_dssp HH-SCC
T ss_pred HH-Hhh
Confidence 77 553
No 280
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.66 E-value=0.011 Score=54.98 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl 55 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGL 55 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 281
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=94.66 E-value=0.012 Score=54.55 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..++|||||++.|+|-
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl 57 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGE 57 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 282
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.65 E-value=0.0069 Score=53.65 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|+|+|.+|+|||||++.|.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~ 24 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMP 24 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4699999999999999999995
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.65 E-value=0.019 Score=50.12 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.++|+|..++|||||++.|+|.-
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34579999999999999999999654
No 284
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=94.62 E-value=0.012 Score=55.85 Aligned_cols=25 Identities=20% Similarity=0.186 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 49 ~Gei~~liG~NGsGKSTLlk~l~Gl 73 (263)
T 2olj_A 49 EGEVVVVIGPSGSGKSTFLRCLNLL 73 (263)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEEcCCCCcHHHHHHHHHcC
Confidence 3457999999999999999999953
No 285
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.61 E-value=0.015 Score=50.54 Aligned_cols=23 Identities=22% Similarity=0.284 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.|++||||+.+.|.+
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999984
No 286
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=94.60 E-value=0.012 Score=55.53 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 40 ~Gei~~l~G~NGsGKSTLlk~l~Gl 64 (256)
T 1vpl_A 40 EGEIFGLIGPNGAGKTTTLRIISTL 64 (256)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=94.59 E-value=0.012 Score=55.26 Aligned_cols=24 Identities=29% Similarity=0.293 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..|+|||||++.|+|-
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl 49 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGM 49 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 447899999999999999999953
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=94.57 E-value=0.013 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.251 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 45 ~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 45 PGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457999999999999999999953
No 289
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.54 E-value=0.013 Score=52.60 Aligned_cols=22 Identities=36% Similarity=0.517 Sum_probs=20.4
Q ss_pred EEEEEecCCCCccHHHHHHhhc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.++|+|.+++|||||++.|+|.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhh
Confidence 5899999999999999999964
No 290
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=94.53 E-value=0.018 Score=51.58 Aligned_cols=25 Identities=32% Similarity=0.301 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+..|+|+|.+++|||||.+.|.+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~ 47 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQ 47 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456799999999999999999984
No 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=94.52 E-value=0.014 Score=55.15 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|+|..|+|||||++.|+|
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~G 68 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYR 68 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999995
No 292
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=94.47 E-value=0.015 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.305 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|+|.|++||||+.+.|.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La 25 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLA 25 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 293
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=94.45 E-value=0.015 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.301 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl 70 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAY 70 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999953
No 294
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=94.43 E-value=0.015 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 44 ~Ge~~~i~G~nGsGKSTLlk~l~Gl 68 (271)
T 2ixe_A 44 PGKVTALVGPNGSGKSTVAALLQNL 68 (271)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999953
No 295
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=94.43 E-value=0.014 Score=54.99 Aligned_cols=24 Identities=25% Similarity=0.338 Sum_probs=21.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|..|+|||||++.|+|-
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl 54 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGI 54 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457999999999999999999964
No 296
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=94.39 E-value=0.019 Score=51.44 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++..|+|+|.|++|||||.+.|.+
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~ 43 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQK 43 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999994
No 297
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.38 E-value=0.017 Score=49.48 Aligned_cols=20 Identities=30% Similarity=0.403 Sum_probs=18.8
Q ss_pred cEEEEEecCCCCccHHHHHH
Q 014539 57 LRAGIVGLPNVGKSTLFNAV 76 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~L 76 (423)
+-|+|+|.|+|||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 46999999999999999999
No 298
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=94.38 E-value=0.014 Score=55.20 Aligned_cols=25 Identities=28% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 32 ~Ge~~~liG~nGsGKSTLl~~i~Gl 56 (266)
T 2yz2_A 32 EGECLLVAGNTGSGKSTLLQIVAGL 56 (266)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Confidence 3457999999999999999999953
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.38 E-value=0.053 Score=54.96 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+++|.+|+||||++..|.+
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~ 120 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLAL 120 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999985
No 300
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=94.37 E-value=0.016 Score=52.43 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+--++|+|.+++|||||++.|+|.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~ 48 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVM 48 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 457999999999999999999953
No 301
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=94.33 E-value=0.017 Score=51.54 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.+.|+|+|.|++||||+.+.|.+
T Consensus 17 ~~~~I~l~G~~GsGKSTla~~L~~ 40 (202)
T 3t61_A 17 FPGSIVVMGVSGSGKSSVGEAIAE 40 (202)
T ss_dssp CSSCEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999984
No 302
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=94.33 E-value=0.019 Score=49.89 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.-|.|+|.|+|||||+.++|.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La 24 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQ 24 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4568999999999999999998
No 303
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.31 E-value=0.016 Score=54.79 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+-.++|+|.+|+|||||+++|.|
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHH
T ss_pred CCCCEEEEECCCCccHHHHHHHHHH
Confidence 3445799999999999999999996
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.25 E-value=0.021 Score=50.14 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++..|.|+|.|++||||+.+.|.
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~ 26 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALA 26 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999998
No 305
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.23 E-value=0.019 Score=50.81 Aligned_cols=22 Identities=27% Similarity=0.468 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|+|.|+|||||+.+.|..
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEECCCccCHHHHHHHHHH
Confidence 4699999999999999999983
No 306
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.19 E-value=0.02 Score=55.57 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=22.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..+.-|||+|.+++|||||++.|.|.
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhh
Confidence 44568999999999999999999963
No 307
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=94.16 E-value=0.017 Score=50.66 Aligned_cols=23 Identities=43% Similarity=0.615 Sum_probs=20.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|.+.|+|+|.|++||||+-+.|.
T Consensus 1 M~~~I~l~G~~GsGKsT~a~~La 23 (184)
T 2iyv_A 1 MAPKAVLVGLPGSGKSTIGRRLA 23 (184)
T ss_dssp -CCSEEEECSTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999998
No 308
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=94.09 E-value=0.021 Score=49.08 Aligned_cols=22 Identities=18% Similarity=-0.037 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|.|.|+|||||+.+.|..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999983
No 309
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=94.08 E-value=0.019 Score=54.31 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.++|+|..++|||||++.|+|
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~G 52 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISG 52 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999995
No 310
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=94.04 E-value=0.021 Score=51.39 Aligned_cols=21 Identities=29% Similarity=0.601 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|+|+|.|.|++||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQII 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 311
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=94.03 E-value=0.024 Score=49.85 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++..|+++|.|++||||+.+.|.+
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~ 35 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLAD 35 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHH
Confidence 457899999999999999999983
No 312
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.00 E-value=0.024 Score=52.57 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+..|||+|.+++|||||++.|.|
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~ 47 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIME 47 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 346799999999999999999995
No 313
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=93.99 E-value=0.013 Score=56.82 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|||.+|+|||||++.|+|
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~g 102 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFR 102 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCchHHHHHHHHHc
Confidence 345899999999999999999995
No 314
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.91 E-value=0.027 Score=50.03 Aligned_cols=22 Identities=23% Similarity=0.234 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.|++||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~ 25 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIM 25 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHH
Confidence 5789999999999999999998
No 315
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=93.90 E-value=0.021 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.249 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+--++|+|.+++|||||++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 316
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=93.88 E-value=0.024 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.547 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|+|+|.|.|++||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIV 21 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999997
No 317
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.86 E-value=0.018 Score=56.83 Aligned_cols=25 Identities=28% Similarity=0.279 Sum_probs=22.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+-+++|+|.+|+|||||++.|+|.-
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~ 194 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVF 194 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999643
No 318
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=93.83 E-value=0.027 Score=49.29 Aligned_cols=22 Identities=23% Similarity=0.357 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.|+|||||+.+.|.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~ 24 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAM 24 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 319
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=93.82 E-value=0.03 Score=50.03 Aligned_cols=23 Identities=30% Similarity=0.187 Sum_probs=21.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+++.|+|.|.|++||||+.+.|.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~ 31 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLV 31 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHH
Confidence 45789999999999999999998
No 320
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=93.78 E-value=0.023 Score=56.54 Aligned_cols=25 Identities=32% Similarity=0.379 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.+||+|.+|||||||++.|+|-
T Consensus 53 ~Gei~~IiGpnGaGKSTLlr~i~GL 77 (366)
T 3tui_C 53 AGQIYGVIGASGAGKSTLIRCVNLL 77 (366)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCCEEEEEcCCCchHHHHHHHHhcC
Confidence 3457899999999999999999954
No 321
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=93.76 E-value=0.025 Score=54.37 Aligned_cols=25 Identities=16% Similarity=0.311 Sum_probs=21.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|-
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999954
No 322
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=93.75 E-value=0.03 Score=50.17 Aligned_cols=25 Identities=40% Similarity=0.505 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+..|+|+|.+++|||||++.|.+
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 323
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=93.74 E-value=0.024 Score=55.39 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||+|+|+|.
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~ 194 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEF 194 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 347999999999999999999953
No 324
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.70 E-value=0.031 Score=48.05 Aligned_cols=24 Identities=29% Similarity=0.216 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|+|.+++|||||++++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~ 58 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVA 58 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHH
Confidence 345799999999999999999995
No 325
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=93.69 E-value=0.21 Score=49.43 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=62.0
Q ss_pred hCcceEEeeeccccccCCCCCCcchHHHHHH----HhhcCC---cEEEechhhhHhhcCCChHHHHHHHH-----HcCCC
Q 014539 255 TMKPIIYVANVAESDLADPGSNPHVNEVMNL----ASDLQS---GRVTISAQVEAELTELPSEERVEYLA-----SLGVS 322 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~----~~~~~~---~~v~~Sa~~e~~i~~l~~ee~~~~l~-----~~g~~ 322 (423)
..+|+++|+||.| +... ....+++++| +++.|. +++.+||+.+.++.+|-. .-..++. -.|-.
T Consensus 95 ~~~p~ilV~NK~D--L~~~--~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~-~l~~~~~~~~i~~vG~~ 169 (368)
T 3h2y_A 95 GNNKVLLVGNKAD--LIPK--SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELAD-AIEYYRGGKDVYVVGCT 169 (368)
T ss_dssp SSSCEEEEEECGG--GSCT--TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHH-HHHHHHTTSCEEEEEBT
T ss_pred CCCcEEEEEEChh--cCCc--ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHh-hhhhhcccceEEEecCC
Confidence 3789999999994 4332 2223344443 455566 789999999988865411 1111111 12445
Q ss_pred CChhhHHHHHHHhhh-----CCEEEecCCCC---CcceEEecCCCChhhhhhhcchh
Q 014539 323 ESGLGNLIRSTYSLL-----GLRTYFTSGEK---ETKAWTIRAGMTAPQAAGVIHSD 371 (423)
Q Consensus 323 ~~~~~~li~~~~~~L-----~li~~fT~g~~---e~raw~i~~gsta~~~A~~IHsD 371 (423)
+.|-..++++++... +...+-. .|. ....+.+..+.+..|..|.++.+
T Consensus 170 nvGKStliN~L~~~~~~~~~~~~~~~~-~~gtT~~~~~~~~~~~~~liDtPG~~~~~ 225 (368)
T 3h2y_A 170 NVGKSTFINRMIKEFSDETENVITTSH-FPGTTLDLIDIPLDEESSLYDTPGIINHH 225 (368)
T ss_dssp TSSHHHHHHHHHHHHTTSCSSCCEEEC-CC----CEEEEESSSSCEEEECCCBCCTT
T ss_pred CCChhHHHHHHHhhhccccccceecCC-CCCeecceEEEEecCCeEEEeCCCcCcHH
Confidence 667777888777653 1221111 112 22345556667777777776543
No 326
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=93.69 E-value=0.03 Score=50.00 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=20.3
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|+|+|.|++||||+.+.|.+
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 5799999999999999999984
No 327
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.65 E-value=0.031 Score=52.19 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+..|+|+|.+|+||||+.+.|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La 48 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALA 48 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999999
No 328
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=93.62 E-value=0.029 Score=48.19 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|.|+|.|.|++||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLS 21 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 329
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=93.59 E-value=0.03 Score=48.96 Aligned_cols=21 Identities=38% Similarity=0.551 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|.|.|.|++||||+.+.|.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~ 22 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVK 22 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 330
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=93.55 E-value=0.031 Score=49.70 Aligned_cols=22 Identities=18% Similarity=0.243 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.|++||||+.+.|.
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~ 25 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLK 25 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 331
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=93.53 E-value=0.032 Score=53.79 Aligned_cols=25 Identities=28% Similarity=0.287 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+..|||+|.+++|||||++.|.|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~ 102 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQA 102 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 3446899999999999999999995
No 332
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=93.45 E-value=0.037 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.261 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.|++||||+.+.|.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~ 30 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLV 30 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 5689999999999999999998
No 333
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=93.43 E-value=0.038 Score=48.76 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++.|+|+|.|++||||+.+.|..
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~ 32 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAA 32 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46899999999999999999983
No 334
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.41 E-value=0.029 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|+|.+|+|||||+|+|+|
T Consensus 174 ~G~~i~ivG~sGsGKSTll~~l~~ 197 (361)
T 2gza_A 174 LERVIVVAGETGSGKTTLMKALMQ 197 (361)
T ss_dssp TTCCEEEEESSSSCHHHHHHHHHT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999994
No 335
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=93.38 E-value=0.037 Score=49.30 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.6
Q ss_pred cCCcEEEEEecCCCCccHHHHHHh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+++.|+|+|.|++||||+.+.|.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La 41 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLA 41 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 336
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.35 E-value=0.026 Score=49.37 Aligned_cols=23 Identities=35% Similarity=0.453 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.++|+|.||+|||||++++.+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~ 60 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLK 60 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 337
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.35 E-value=0.03 Score=55.46 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl 53 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGF 53 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 456899999999999999999964
No 338
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=93.33 E-value=0.035 Score=48.63 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|+|.|++||||+.+.|.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~ 24 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIV 24 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999997
No 339
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=93.30 E-value=0.039 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.280 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|...|+|.|.|++||||+.+.|.
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~ 27 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIV 27 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHH
T ss_pred cCcEEEEECCCCCCHHHHHHHHH
Confidence 44679999999999999999997
No 340
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=93.29 E-value=0.036 Score=50.05 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|+|+|.|.|++||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~ 21 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIM 21 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 479999999999999999998
No 341
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=93.27 E-value=0.04 Score=48.74 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+.|+|+|.+++||||+.+.|..
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~ 30 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRS 30 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999983
No 342
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.25 E-value=0.031 Score=55.31 Aligned_cols=24 Identities=21% Similarity=0.396 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl 64 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGL 64 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999964
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=93.23 E-value=0.034 Score=49.10 Aligned_cols=23 Identities=30% Similarity=0.299 Sum_probs=21.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+++.|+|.|.|++||||+.+.|.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~ 33 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLV 33 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999998
No 344
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=93.22 E-value=0.039 Score=48.21 Aligned_cols=23 Identities=30% Similarity=0.372 Sum_probs=20.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.+++||||+.+.|.+
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~ 27 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEE 27 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 345
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=93.21 E-value=0.041 Score=48.42 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.++.|+|+|.|++||||+.+.|.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La 30 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIV 30 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999998
No 346
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.19 E-value=0.032 Score=55.29 Aligned_cols=24 Identities=17% Similarity=0.194 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGI 52 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCC
Confidence 457899999999999999999964
No 347
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=93.17 E-value=0.035 Score=47.86 Aligned_cols=21 Identities=19% Similarity=0.146 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|+|.|.|++||||+.+.|.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La 23 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELA 23 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 348
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.16 E-value=0.033 Score=55.13 Aligned_cols=22 Identities=27% Similarity=0.295 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-.|+|+|.+|+|||||+++|+|
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g 145 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLD 145 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4799999999999999999995
No 349
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=93.16 E-value=0.048 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.170 Sum_probs=21.7
Q ss_pred cCCcEEEEEecCCCCccHHHHHHh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
..++.|+|.|.|+|||||+.+.|.
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~ 50 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLK 50 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999998
No 350
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=93.16 E-value=0.04 Score=48.21 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...|.++|.|++||||+.+.|.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHH
Confidence 4579999999999999999998
No 351
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=93.11 E-value=0.04 Score=48.27 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|+|.|.|++||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLY 21 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 368999999999999999998
No 352
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=93.09 E-value=0.042 Score=49.77 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|+|.|++||||+.+.|.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La 25 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQ 25 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 4789999999999999999998
No 353
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.04 E-value=0.044 Score=49.50 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.+++||||+.+.|.
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~ 25 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFA 25 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 354
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.03 E-value=0.035 Score=55.28 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGL 52 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcC
Confidence 346899999999999999999964
No 355
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.02 E-value=0.035 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|-
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl 52 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGI 52 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCchHHHHHHHHhcC
Confidence 457899999999999999999964
No 356
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.97 E-value=0.036 Score=55.37 Aligned_cols=24 Identities=29% Similarity=0.282 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|-
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl 52 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGL 52 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcC
Confidence 446899999999999999999964
No 357
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=92.90 E-value=0.048 Score=47.44 Aligned_cols=22 Identities=27% Similarity=0.120 Sum_probs=16.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|.|.|.|++||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC----CHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3579999999999999999997
No 358
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.88 E-value=0.038 Score=55.04 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl 60 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGL 60 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCChHHHHHHHHHcC
Confidence 457899999999999999999964
No 359
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=92.87 E-value=0.053 Score=48.87 Aligned_cols=26 Identities=31% Similarity=0.282 Sum_probs=22.4
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhh
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..++.-|+|+|.|++||||+.+.|.+
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~ 47 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEH 47 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 34567899999999999999999983
No 360
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=92.81 E-value=0.048 Score=49.69 Aligned_cols=22 Identities=41% Similarity=0.588 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|+|+|.|++||||+.+.|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 361
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.80 E-value=0.043 Score=50.35 Aligned_cols=26 Identities=23% Similarity=0.229 Sum_probs=22.5
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhc
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
..+.-|+|+|..++|||||++.|.+.
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 34568999999999999999999953
No 362
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.75 E-value=0.039 Score=54.82 Aligned_cols=23 Identities=22% Similarity=0.235 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.|+|+|.+|+|||||+++|++
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~ 158 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMID 158 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 45799999999999999999995
No 363
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.75 E-value=0.051 Score=49.22 Aligned_cols=22 Identities=23% Similarity=0.326 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|.|+|.|++||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La 26 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIK 26 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 3689999999999999999998
No 364
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=92.74 E-value=0.042 Score=47.81 Aligned_cols=21 Identities=33% Similarity=0.444 Sum_probs=19.5
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.|.|+|.|++||||+.+.|..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 699999999999999999983
No 365
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=92.74 E-value=0.052 Score=52.45 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.|+|+|.+|||||||++.|.|
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lag 124 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGR 124 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999996
No 366
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.71 E-value=0.047 Score=52.89 Aligned_cols=23 Identities=22% Similarity=0.416 Sum_probs=20.5
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.-++|+|+.|||||||+|.|.|.
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~ 27 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNE 27 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred cEEEEEecCCCCHHHHHHHHHhh
Confidence 35789999999999999999964
No 367
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.70 E-value=0.048 Score=47.96 Aligned_cols=21 Identities=24% Similarity=0.322 Sum_probs=19.5
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+-|+|.|.|++||||+.+.|.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~ 21 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLA 21 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999998
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.67 E-value=0.045 Score=51.36 Aligned_cols=23 Identities=22% Similarity=0.268 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..|+|+|.|++||||+.+.|.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999984
No 369
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=92.61 E-value=0.044 Score=51.96 Aligned_cols=21 Identities=33% Similarity=0.495 Sum_probs=19.7
Q ss_pred EEEEecCCCCccHHHHHHhhc
Q 014539 59 AGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
++|+|.||+|||||+++|+|.
T Consensus 47 vlL~Gp~GtGKTtLakala~~ 67 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANE 67 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 999999999999999999953
No 370
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=92.60 E-value=0.025 Score=50.64 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=19.4
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-|+|+|.+|+||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHH
Confidence 589999999999999999983
No 371
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.60 E-value=0.045 Score=54.86 Aligned_cols=24 Identities=38% Similarity=0.589 Sum_probs=21.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|+|.+++|||||++.|+|
T Consensus 46 ~Ge~~~llGpsGsGKSTLLr~iaG 69 (390)
T 3gd7_A 46 PGQRVGLLGRTGSGKSTLLSAFLR 69 (390)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCChHHHHHHHHhC
Confidence 345799999999999999999995
No 372
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=92.57 E-value=0.063 Score=52.36 Aligned_cols=24 Identities=33% Similarity=0.365 Sum_probs=21.3
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+-|||+|.++||||||++.|.+
T Consensus 91 ~p~iigI~GpsGSGKSTl~~~L~~ 114 (321)
T 3tqc_A 91 VPYIIGIAGSVAVGKSTTSRVLKA 114 (321)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 446799999999999999999984
No 373
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=92.53 E-value=0.047 Score=51.89 Aligned_cols=25 Identities=16% Similarity=0.036 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+--++|+|.|++|||||++.|++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~ 58 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQ 58 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3446899999999999999999953
No 374
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=92.53 E-value=0.046 Score=56.72 Aligned_cols=23 Identities=35% Similarity=0.469 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+..++|+|.+|+|||||+|+|+|
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~ 282 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMM 282 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHh
Confidence 34599999999999999999994
No 375
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=92.51 E-value=0.052 Score=49.21 Aligned_cols=22 Identities=32% Similarity=0.453 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|.|+|.|++||||+.+.|.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La 26 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIK 26 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999998
No 376
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=92.41 E-value=0.056 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.388 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...|.|+|.|++||||+.+.|.
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEeCCCCCHHHHHHHHH
Confidence 3569999999999999999998
No 377
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=92.41 E-value=0.07 Score=55.87 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=23.0
Q ss_pred ccCCcEEEEEecCCCCccHHHHHHhh
Q 014539 53 ISMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 53 ~~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
...+..|+|+|.+|+|||||.++|.+
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~ 391 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAA 391 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHH
Confidence 44567899999999999999999995
No 378
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=92.38 E-value=0.032 Score=55.09 Aligned_cols=24 Identities=17% Similarity=0.195 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+++|||||++.|+|-
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl 49 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGF 49 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCccHHHHHHHHHcC
Confidence 347899999999999999999964
No 379
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.36 E-value=0.057 Score=50.56 Aligned_cols=22 Identities=36% Similarity=0.522 Sum_probs=20.1
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+-|.|+|.||+||||+.+.|.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La 25 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLA 25 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHH
Confidence 3579999999999999999998
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=92.34 E-value=0.06 Score=51.61 Aligned_cols=25 Identities=20% Similarity=0.049 Sum_probs=21.9
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+..|+|+|.+++|||||.+.|.+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~ 53 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYN 53 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3457899999999999999999984
No 381
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=92.32 E-value=0.052 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+--++|+|.|++|||||++.|++
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~ 45 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIA 45 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 34689999999999999999994
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=92.27 E-value=0.059 Score=49.15 Aligned_cols=21 Identities=33% Similarity=0.240 Sum_probs=19.6
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|+|.|.|++||||+.+.|.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La 21 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVK 21 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 469999999999999999998
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=92.20 E-value=0.064 Score=51.75 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++++|.+|||||||++.|+|.
T Consensus 100 g~vi~lvG~nGsGKTTll~~Lag~ 123 (302)
T 3b9q_A 100 PAVIMIVGVNGGGKTTSLGKLAHR 123 (302)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 457999999999999999999963
No 384
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.16 E-value=0.053 Score=54.82 Aligned_cols=23 Identities=26% Similarity=0.163 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+--|+|+|.+|+|||||+++|+|
T Consensus 167 ggii~I~GpnGSGKTTlL~allg 189 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQ 189 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHh
Confidence 34689999999999999999995
No 385
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.15 E-value=0.056 Score=55.35 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.++|+|..|+|||||++.|+|-.
T Consensus 137 ~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 137 EGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp SCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 45789999999999999999999643
No 386
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.08 E-value=0.029 Score=55.45 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+-.++|+|.+|+|||||++.|+|-
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl 54 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGL 54 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Confidence 457899999999999999999964
No 387
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.07 E-value=0.064 Score=52.84 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=23.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-+++|+|.+++|||||++.|+|..
T Consensus 70 ~Gq~~gIiG~nGaGKTTLl~~I~g~~ 95 (347)
T 2obl_A 70 IGQRIGIFAGSGVGKSTLLGMICNGA 95 (347)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 45689999999999999999999653
No 388
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=92.05 E-value=0.07 Score=47.33 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|.|.+++||||+.+.|.+
T Consensus 3 ~~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 3 GIVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999983
No 389
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=92.05 E-value=0.058 Score=56.30 Aligned_cols=27 Identities=30% Similarity=0.347 Sum_probs=23.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
..+-.++|+|..|+|||||++.|+|..
T Consensus 45 ~~Ge~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 45 KEGMVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999999743
No 390
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=92.03 E-value=0.058 Score=49.92 Aligned_cols=21 Identities=43% Similarity=0.581 Sum_probs=19.6
Q ss_pred EEEEecCCCCccHHHHHHhhc
Q 014539 59 AGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+.|+|.||+|||||++++.+.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~ 72 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGE 72 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 999999999999999999953
No 391
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=92.02 E-value=0.16 Score=47.77 Aligned_cols=101 Identities=16% Similarity=0.205 Sum_probs=55.1
Q ss_pred CcceEEeeeccccccCCCCCCcchHHHHHHHhhcCCcEEEechhhhHhhcCCChHHHHHHHHH-------cCCCCChhhH
Q 014539 256 MKPIIYVANVAESDLADPGSNPHVNEVMNLASDLQSGRVTISAQVEAELTELPSEERVEYLAS-------LGVSESGLGN 328 (423)
Q Consensus 256 ~kpi~~v~N~~~~d~~~~~~~~~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l~~ee~~~~l~~-------~g~~~~~~~~ 328 (423)
.+|.++++||. |+.+ ....++..++.++.|.++ .+||+.+.++.+| .+.+.. .|..+.|-..
T Consensus 46 ~k~~iivlNK~--DL~~---~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L-----~~~l~~~~~~v~~vG~~~vGKSs 114 (262)
T 3cnl_A 46 RKETIILLNKV--DIAD---EKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLL-----KKLSFDRLARVLIVGVPNTGKST 114 (262)
T ss_dssp TSEEEEEEECG--GGSC---HHHHHHHHHHHHHTTCCE-EECCTTSCHHHHH-----HHHCCCTTCEEEEEESTTSSHHH
T ss_pred CCCcEEEEECc--cCCC---HHHHHHHHHHHHHcCCeE-EEECCCCcCHHHH-----HHHHHHhhhheEEeCCCCCCHHH
Confidence 78999999999 4543 123344455555667788 9999988776433 222322 2445667777
Q ss_pred HHHHHHhhhCCE----EEecCCCCCcceEEecCCCChhhhhhhcch
Q 014539 329 LIRSTYSLLGLR----TYFTSGEKETKAWTIRAGMTAPQAAGVIHS 370 (423)
Q Consensus 329 li~~~~~~L~li----~~fT~g~~e~raw~i~~gsta~~~A~~IHs 370 (423)
+++.....-... .-.|.. ..-..+..+.+..|.+|....
T Consensus 115 lin~l~~~~~~~~~~~~g~T~~---~~~~~~~~~~~l~DtpG~~~~ 157 (262)
T 3cnl_A 115 IINKLKGKRASSVGAQPGITKG---IQWFSLENGVKILDTPGILYK 157 (262)
T ss_dssp HHHHHHTTCC----------CC---SCEEECTTSCEEESSCEECCC
T ss_pred HHHHHhcccccccCCCCCCccc---eEEEEeCCCEEEEECCCcccC
Confidence 777655322111 111111 112233455666677776643
No 392
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=91.80 E-value=0.062 Score=50.02 Aligned_cols=25 Identities=16% Similarity=0.214 Sum_probs=21.8
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.++..|.++|.|++||||+.+.|..
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~ 54 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQK 54 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3456899999999999999999984
No 393
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=91.79 E-value=0.082 Score=55.74 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 369 ~G~~~~ivG~sGsGKSTLl~~l~g~ 393 (595)
T 2yl4_A 369 SGSVTALVGPSGSGKSTVLSLLLRL 393 (595)
T ss_dssp TTCEEEEECCTTSSSTHHHHHHTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999953
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=91.72 E-value=0.079 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..++|+|.+|+|||||+++|..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~ 26 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVA 26 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 395
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=91.68 E-value=0.082 Score=48.67 Aligned_cols=25 Identities=32% Similarity=0.357 Sum_probs=22.1
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+++-|+|.|.|++||||+.+.|..
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~ 48 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYH 48 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 3567899999999999999999984
No 396
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=91.62 E-value=0.084 Score=46.87 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=19.8
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.|+|.|.|++||||+.+.|.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~ 36 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLV 36 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999998
No 397
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=91.61 E-value=0.063 Score=56.06 Aligned_cols=25 Identities=24% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+--+||+|..|+|||||++.|+|.
T Consensus 24 ~Gei~gLiGpNGaGKSTLlkiL~Gl 48 (538)
T 3ozx_A 24 NNTILGVLGKNGVGKTTVLKILAGE 48 (538)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcC
Confidence 3457999999999999999999974
No 398
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=91.45 E-value=0.069 Score=56.62 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.+||+|..|+|||||++.|+|..
T Consensus 102 ~Gei~~LvGpNGaGKSTLLkiL~Gll 127 (608)
T 3j16_B 102 PGQVLGLVGTNGIGKSTALKILAGKQ 127 (608)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 45579999999999999999999743
No 399
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=91.44 E-value=0.093 Score=55.39 Aligned_cols=37 Identities=22% Similarity=0.328 Sum_probs=28.4
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~ 103 (423)
.+-.++|+|.+|+|||||++.|.|-- +|..|.+.+.+
T Consensus 380 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 416 (598)
T 3qf4_B 380 PGQKVALVGPTGSGKTTIVNLLMRFY------------DVDRGQILVDG 416 (598)
T ss_dssp TTCEEEEECCTTSSTTHHHHHHTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCc------------CCCCeEEEECC
Confidence 34589999999999999999999532 24456666655
No 400
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=91.43 E-value=0.07 Score=54.95 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.8
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-.++|+|.+++|||||+++|+|-
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl 52 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTA 52 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcC
Confidence 36899999999999999999973
No 401
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=91.40 E-value=0.084 Score=55.51 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 368 ~G~~~~ivG~sGsGKSTLl~~l~g~ 392 (582)
T 3b60_A 368 AGKTVALVGRSGSGKSTIASLITRF 392 (582)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHTTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhhc
Confidence 3458999999999999999999953
No 402
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=91.27 E-value=0.088 Score=49.91 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..-|.|+|.|++||||+.+.|..
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999983
No 403
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=91.21 E-value=0.098 Score=47.89 Aligned_cols=22 Identities=32% Similarity=0.492 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|.|+|.|++||||+.+.|.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La 37 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLA 37 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 404
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=91.20 E-value=0.079 Score=49.85 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.0
Q ss_pred EEEEEecCCCCccHHHHHHhhc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-|.|+|.||+|||||++++.+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCcChHHHHHHHHHHH
Confidence 3999999999999999999953
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.18 E-value=0.082 Score=47.24 Aligned_cols=23 Identities=22% Similarity=0.114 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+--++|+|.|++|||||++.|++
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999994
No 406
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.15 E-value=0.093 Score=48.73 Aligned_cols=23 Identities=26% Similarity=0.316 Sum_probs=20.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.+.|+|.|.|++||||+.+.|.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la 30 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLA 30 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 34789999999999999999998
No 407
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=91.09 E-value=0.28 Score=43.19 Aligned_cols=33 Identities=18% Similarity=0.047 Sum_probs=25.0
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEecc
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCF 162 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~ 162 (423)
..++++|||+.. .......+..||.+++|++..
T Consensus 76 yD~viiD~~~~~---------~~~~~~~l~~ad~viiv~~~~ 108 (206)
T 4dzz_A 76 YDFAIVDGAGSL---------SVITSAAVMVSDLVIIPVTPS 108 (206)
T ss_dssp SSEEEEECCSSS---------SHHHHHHHHHCSEEEEEECSC
T ss_pred CCEEEEECCCCC---------CHHHHHHHHHCCEEEEEecCC
Confidence 469999999864 124566678899999999853
No 408
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=91.08 E-value=0.091 Score=55.22 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|+|-
T Consensus 368 ~G~~~~ivG~sGsGKSTll~~l~g~ 392 (582)
T 3b5x_A 368 QGKTVALVGRSGSGKSTIANLFTRF 392 (582)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3458999999999999999999953
No 409
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=91.07 E-value=0.082 Score=56.03 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=23.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
..+-.++|+|..|+|||||++.|+|..
T Consensus 115 ~~Ge~~~LiG~NGsGKSTLlkiL~Gll 141 (607)
T 3bk7_A 115 KDGMVVGIVGPNGTGKTTAVKILAGQL 141 (607)
T ss_dssp CTTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHhCCC
Confidence 345679999999999999999999743
No 410
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=91.07 E-value=0.08 Score=51.45 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.6
Q ss_pred cEEEEEecCCCCccHHHHHHhhc
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-.++|+|.||+|||||++++++.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 35899999999999999999954
No 411
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=91.05 E-value=0.11 Score=49.47 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++.-|.|+|.|||||||+.++|..
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346789999999999999999983
No 412
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=91.02 E-value=0.091 Score=45.78 Aligned_cols=21 Identities=33% Similarity=0.396 Sum_probs=19.3
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-.+|+|..++|||||+.+|.+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~ 48 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILF 48 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 679999999999999999984
No 413
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=90.96 E-value=0.088 Score=47.83 Aligned_cols=23 Identities=13% Similarity=0.200 Sum_probs=20.8
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+--++|+|.|++|||||+..|++
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHH
Confidence 45789999999999999999995
No 414
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=90.94 E-value=0.096 Score=53.22 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-+++|+|.+++|||||++.|+|..
T Consensus 156 ~Gq~~~IvG~sGsGKSTLl~~Iag~~ 181 (438)
T 2dpy_A 156 RGQRMGLFAGSGVGKSVLLGMMARYT 181 (438)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45689999999999999999999653
No 415
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=90.84 E-value=0.098 Score=60.39 Aligned_cols=24 Identities=25% Similarity=0.307 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-+|||||++|+|||||++.|.+
T Consensus 1104 ~Ge~vaIVG~SGsGKSTL~~lL~r 1127 (1321)
T 4f4c_A 1104 PGQTLALVGPSGCGKSTVVALLER 1127 (1321)
T ss_dssp TTCEEEEECSTTSSTTSHHHHHTT
T ss_pred CCCEEEEECCCCChHHHHHHHHhc
Confidence 356899999999999999999994
No 416
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=90.80 E-value=0.11 Score=51.47 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=21.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.|++||.+|||||||++.|+|
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag 179 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAH 179 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHh
Confidence 45799999999999999999996
No 417
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=90.64 E-value=0.11 Score=47.20 Aligned_cols=21 Identities=24% Similarity=0.351 Sum_probs=19.7
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|.|.|+|.|+|||+|.-..|+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La 21 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLA 21 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHH
Confidence 578999999999999999998
No 418
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=90.62 E-value=0.11 Score=48.12 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+.|+|.|.|++||||+-+.|..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHH
Confidence 36799999999999999999973
No 419
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.59 E-value=0.12 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+..|+|+|.+++||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 446899999999999999999984
No 420
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=90.50 E-value=0.086 Score=55.39 Aligned_cols=37 Identities=24% Similarity=0.309 Sum_probs=28.6
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~ 103 (423)
.+-.++|+|.+|+|||||++.|.|-- +|..|.+.+++
T Consensus 366 ~G~~~~ivG~sGsGKSTll~~l~g~~------------~p~~G~i~~~g 402 (578)
T 4a82_A 366 KGETVAFVGMSGGGKSTLINLIPRFY------------DVTSGQILIDG 402 (578)
T ss_dssp TTCEEEEECSTTSSHHHHHTTTTTSS------------CCSEEEEEETT
T ss_pred CCCEEEEECCCCChHHHHHHHHhcCC------------CCCCcEEEECC
Confidence 34589999999999999999999532 24467676655
No 421
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=90.49 E-value=0.12 Score=51.51 Aligned_cols=24 Identities=29% Similarity=0.192 Sum_probs=21.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+..++|+|.||+|||||+++|.+
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~ 191 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLE 191 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHh
Confidence 345799999999999999999995
No 422
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=90.39 E-value=0.11 Score=44.73 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=19.3
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
-.|+|.|.|++||||+-+.|.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La 28 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELG 28 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999997
No 423
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=90.26 E-value=0.1 Score=54.52 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+-.+||+|..++|||||++.|+|-.
T Consensus 294 Gei~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 294 GEIIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4578999999999999999999643
No 424
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=90.23 E-value=0.12 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred cCCcEEEEEecCCCCccHHHHHHh
Q 014539 54 SMSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 54 ~~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+...|.++|.|++||||+.+.|.
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La 60 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLT 60 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHH
Confidence 345789999999999999999998
No 425
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=90.21 E-value=0.1 Score=54.97 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=22.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|.+|+|||||++.|.|-
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~ 392 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRL 392 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3458999999999999999999953
No 426
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=90.16 E-value=0.12 Score=46.26 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|+|.|.+++||||+-+.|.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~ 33 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILK 33 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 427
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=90.08 E-value=0.12 Score=53.97 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.+||+|..|+|||||++.|+|..
T Consensus 311 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 311 KGEVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34579999999999999999999643
No 428
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=89.91 E-value=0.12 Score=48.21 Aligned_cols=21 Identities=19% Similarity=0.173 Sum_probs=19.1
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-|+|+|.|++|||||-++|.+
T Consensus 3 li~I~G~~GSGKSTla~~La~ 23 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQ 23 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999999984
No 429
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=89.85 E-value=0.12 Score=51.12 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.4
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-.+|+|..|+||||||++++
T Consensus 25 ~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46799999999999999998
No 430
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=89.80 E-value=0.16 Score=48.26 Aligned_cols=22 Identities=23% Similarity=0.403 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|+|.|.|++||||+.+.|.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3679999999999999999998
No 431
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=89.52 E-value=0.13 Score=54.53 Aligned_cols=25 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+-.++|+|..|+|||||++.|+|..
T Consensus 382 Gei~~i~G~NGsGKSTLlk~l~Gl~ 406 (607)
T 3bk7_A 382 GEVIGIVGPNGIGKTTFVKMLAGVE 406 (607)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999999643
No 432
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=89.47 E-value=0.16 Score=47.16 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=20.2
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.|+.||+|.|++||||+...|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~ 29 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIK 29 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHH
Confidence 4799999999999999999998
No 433
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=89.37 E-value=0.42 Score=46.83 Aligned_cols=36 Identities=19% Similarity=0.324 Sum_probs=29.7
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.+|||+|.. .....+..+.++|+++|+|+|+++
T Consensus 161 v~l~iwDtaGQe-------~~R~~w~~yy~~a~~iIfV~diS~ 196 (340)
T 4fid_A 161 IPFHLIDVGGQR-------SERKXWVSFFSDVDCAIFVTSLAE 196 (340)
T ss_dssp CEEEEEECCSCH-------HHHHHHHTTSCSCSEEEEEEEGGG
T ss_pred eeeccccCCCcc-------cccccHHHHhccCCEEEEEEECCc
Confidence 569999999983 344567788999999999999874
No 434
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=89.29 E-value=0.65 Score=43.59 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..-|.|.|.||+|||||.+++.+
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~ 76 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVAT 76 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHHHHHH
Confidence 45799999999999999999984
No 435
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=89.22 E-value=0.15 Score=47.96 Aligned_cols=23 Identities=22% Similarity=0.192 Sum_probs=20.7
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+--++|+|.|++|||||+..+++
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999995
No 436
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=89.18 E-value=0.14 Score=54.27 Aligned_cols=23 Identities=22% Similarity=0.224 Sum_probs=20.6
Q ss_pred EEEEEecCCCCccHHHHHHhhcC
Q 014539 58 RAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.++|+|..|+|||||++.|+|-.
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~ 402 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGAL 402 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhcCC
Confidence 47999999999999999999644
No 437
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=88.97 E-value=0.84 Score=40.93 Aligned_cols=33 Identities=6% Similarity=-0.047 Sum_probs=24.1
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEec
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~ 161 (423)
..++++|||+...+ ......+..||.++++++.
T Consensus 68 yD~viiD~p~~~~~--------~~~~~~l~~aD~viiv~~~ 100 (209)
T 3cwq_A 68 YQNIVIDTQARPED--------EDLEALADGCDLLVIPSTP 100 (209)
T ss_dssp CSEEEEEEECCCSS--------SHHHHHHHTSSEEEEEECS
T ss_pred CCEEEEeCCCCcCc--------HHHHHHHHHCCEEEEEecC
Confidence 45999999986211 1345667889999999885
No 438
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=88.74 E-value=0.18 Score=43.26 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...+.|.|.||+|||||.+++.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~ 64 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLA 64 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999998
No 439
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=88.60 E-value=0.37 Score=48.39 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=29.2
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEeccC
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRCFE 163 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~~~ 163 (423)
..+.+|||+|..... ..+..++++|+++|+|+|+++
T Consensus 217 v~l~iwDtaGQe~~r-------~~w~~yf~~a~~iIfV~dis~ 252 (402)
T 1azs_C 217 VNFHMFDVGGQRDER-------RKWIQCFNDVTAIIFVVASSS 252 (402)
T ss_dssp EEEEEEEECCSGGGG-------GGGGGGTTTCCEEEEEEETTG
T ss_pred ccceecccchhhhhh-------hhhHhhccCCCEEEEEEECcc
Confidence 568999999985433 356778899999999999875
No 440
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=88.39 E-value=0.18 Score=43.18 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.3
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-.+|+|..++|||||+.+|.
T Consensus 25 ~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 46899999999999999987
No 441
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=88.11 E-value=0.13 Score=53.05 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=20.1
Q ss_pred EEEEEecCCCCccHHHHHHhhc
Q 014539 58 RAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
-|.|+|.||+|||||++++.+.
T Consensus 66 GvLL~GppGtGKTtLaraIa~~ 87 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGE 87 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4999999999999999999954
No 442
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=88.10 E-value=0.59 Score=43.56 Aligned_cols=23 Identities=30% Similarity=0.355 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..-+.|.|.||+|||||.+++.+
T Consensus 51 ~~~~ll~G~~GtGKT~la~~la~ 73 (285)
T 3h4m_A 51 PKGILLYGPPGTGKTLLAKAVAT 73 (285)
T ss_dssp CSEEEEESSSSSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35699999999999999999984
No 443
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=87.98 E-value=1.1 Score=43.23 Aligned_cols=49 Identities=10% Similarity=0.071 Sum_probs=34.9
Q ss_pred hCcceEEeeeccccccCCCCCCc---chHHHHHHHhhcCCcEEEechhhhHhhcCC
Q 014539 255 TMKPIIYVANVAESDLADPGSNP---HVNEVMNLASDLQSGRVTISAQVEAELTEL 307 (423)
Q Consensus 255 t~kpi~~v~N~~~~d~~~~~~~~---~~~~i~~~~~~~~~~~v~~Sa~~e~~i~~l 307 (423)
..+|.++++||. |+.+. .. ..+.+.+++...|.+++.+||..+.++.+|
T Consensus 116 ~~~~~vivlnK~--DL~~~--~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L 167 (307)
T 1t9h_A 116 NDIQPIICITKM--DLIED--QDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADI 167 (307)
T ss_dssp TTCEEEEEEECG--GGCCC--HHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTT
T ss_pred CCCCEEEEEECC--ccCch--hhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHH
Confidence 578899999999 45432 11 245555655566889999999988777665
No 444
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=87.93 E-value=0.21 Score=46.18 Aligned_cols=22 Identities=32% Similarity=0.427 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|.|+|.||+|||||.+++.+
T Consensus 46 ~~vll~G~~GtGKT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHH
Confidence 4599999999999999999984
No 445
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=87.67 E-value=0.039 Score=51.13 Aligned_cols=21 Identities=33% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEEecCCCCccHHHHHHhhc
Q 014539 59 AGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 59 I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
++|+|.+++|||||+++|+|-
T Consensus 30 ~~i~GpnGsGKSTll~~i~g~ 50 (227)
T 1qhl_A 30 TTLSGGNGAGKSTTMAAFVTA 50 (227)
T ss_dssp HHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 589999999999999999963
No 446
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.62 E-value=0.19 Score=46.85 Aligned_cols=22 Identities=32% Similarity=0.320 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++.|+|.|.+++||||+.+.|.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~ 45 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILK 45 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTG
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999998
No 447
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=87.43 E-value=0.17 Score=46.09 Aligned_cols=22 Identities=27% Similarity=0.238 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
++-|+|.|.+++||||+.+.|.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~ 27 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLA 27 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHH
Confidence 4679999999999999999997
No 448
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=87.40 E-value=0.64 Score=47.11 Aligned_cols=23 Identities=30% Similarity=0.369 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..-|-+.|.||+|||+|..++++
T Consensus 215 prGvLL~GPPGtGKTllAkAiA~ 237 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLAKAVAA 237 (437)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHH
Confidence 35689999999999999999994
No 449
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=87.07 E-value=1.2 Score=42.88 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-|.|.|.||+|||+|..++..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~ 67 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVAT 67 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHH
Confidence 4689999999999999999994
No 450
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=86.94 E-value=0.29 Score=44.88 Aligned_cols=23 Identities=35% Similarity=0.400 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
++.|+|.|.+++||||+.+.|..
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~ 24 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTK 24 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 451
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=86.93 E-value=0.29 Score=47.20 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+-.|+++|.+|+||||++..|.+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~ 126 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAK 126 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHH
Confidence 34699999999999999999985
No 452
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.92 E-value=0.14 Score=56.98 Aligned_cols=26 Identities=35% Similarity=0.492 Sum_probs=22.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhcC
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
.+-.++|+|..|+|||||++.|+|..
T Consensus 698 ~GeivaIiGpNGSGKSTLLklLaGll 723 (986)
T 2iw3_A 698 LSSRIAVIGPNGAGKSTLINVLTGEL 723 (986)
T ss_dssp TTCEEEECSCCCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34589999999999999999999643
No 453
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=86.52 E-value=0.28 Score=44.43 Aligned_cols=21 Identities=19% Similarity=0.240 Sum_probs=18.4
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
--++|+|.|++|||||...++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 468999999999999987776
No 454
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=86.51 E-value=0.27 Score=44.02 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.|+|+|.|++||||+.+.|..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~ 25 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVAS 25 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999983
No 455
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=86.38 E-value=0.28 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=21.1
Q ss_pred CcEEEEEecCCCCccHHHHHHhhc
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
+--++|+|.|++|||||++.|++.
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~ 154 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVM 154 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 347899999999999999999953
No 456
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=86.37 E-value=0.31 Score=54.32 Aligned_cols=25 Identities=40% Similarity=0.553 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|+|..|+|||||++.|+|+
T Consensus 460 ~Ge~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 460 RARRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457899999999999999999964
No 457
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=86.37 E-value=0.35 Score=44.53 Aligned_cols=23 Identities=17% Similarity=0.160 Sum_probs=18.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.++-|+|.|.+++||||+.+.|.
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~ 46 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFC 46 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999998
No 458
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=86.23 E-value=0.3 Score=56.29 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=21.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-.++|||.+|+|||||++.|.|
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~ 466 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLR 466 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTT
T ss_pred CCcEEEEEecCCCcHHHHHHHhcc
Confidence 346899999999999999999996
No 459
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=86.08 E-value=0.13 Score=51.05 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=19.5
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.++|+|..++|||||+++|.+
T Consensus 62 ~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 62 FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp EEEEEESHHHHHHHHTHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 899999999999999999864
No 460
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=86.06 E-value=0.28 Score=56.38 Aligned_cols=25 Identities=24% Similarity=0.251 Sum_probs=22.2
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+-.++|||.+|+|||||++.|.|-
T Consensus 415 ~G~~~~ivG~sGsGKSTl~~ll~g~ 439 (1284)
T 3g5u_A 415 SGQTVALVGNSGCGKSTTVQLMQRL 439 (1284)
T ss_dssp TTCEEEEECCSSSSHHHHHHHTTTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3468999999999999999999963
No 461
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=86.04 E-value=0.36 Score=46.03 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=17.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+-|||.|.+++||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
No 462
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=85.96 E-value=0.3 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
...+.|.|.||+|||||..++..
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~ 74 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACA 74 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 46799999999999999999983
No 463
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=85.71 E-value=0.25 Score=45.81 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.-|++.|.+++||||+.+.|.
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~ 48 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVV 48 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 4679999999999999999998
No 464
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=85.62 E-value=0.23 Score=53.05 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=19.3
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+-.++|+|.+++|||||+|.++
T Consensus 348 Ge~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 348 GTFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TSEEEEECSTTSSHHHHHTTTH
T ss_pred CCEEEEEeeCCCCHHHHHHHHH
Confidence 3478999999999999999765
No 465
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=85.58 E-value=0.33 Score=42.87 Aligned_cols=22 Identities=27% Similarity=0.283 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-+.|.|.||+|||||..++..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 5689999999999999999983
No 466
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=85.18 E-value=0.33 Score=50.17 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=19.8
Q ss_pred CcEEEEEecCCCCccHHHHH--Hhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNA--VVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~--Ltg 78 (423)
+-.++|+|.+++|||||++. +.|
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ll~G 63 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQFLYNG 63 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHH
Confidence 45799999999999999999 454
No 467
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=85.14 E-value=0.45 Score=43.53 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=18.0
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-|.|+|.|+|||+|....|+
T Consensus 31 iI~llGpPGsGKgTqa~~L~ 50 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLV 50 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 46678999999999999998
No 468
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=85.11 E-value=0.26 Score=42.13 Aligned_cols=22 Identities=23% Similarity=0.454 Sum_probs=19.7
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...+.|.|.||+|||||..++.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~ 64 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLA 64 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHH
Confidence 3568999999999999999998
No 469
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.00 E-value=0.41 Score=46.61 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=21.0
Q ss_pred CCcEEEEEecCCCCccHHHHHHhh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
|...|.|+|.|++|||||-..|..
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~ 27 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALAD 27 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 445799999999999999999984
No 470
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=84.86 E-value=0.42 Score=43.15 Aligned_cols=23 Identities=35% Similarity=0.367 Sum_probs=20.1
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
|+.-|+|-|..||||||+.+.|.
T Consensus 1 M~kFI~~EG~dGsGKsTq~~~L~ 23 (205)
T 4hlc_A 1 MSAFITFEGPEGSGKTTVINEVY 23 (205)
T ss_dssp -CEEEEEECCTTSCHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHH
Confidence 45679999999999999999998
No 471
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=84.83 E-value=0.27 Score=44.84 Aligned_cols=20 Identities=25% Similarity=0.197 Sum_probs=18.8
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.+.|.||+||||+..+|.
T Consensus 60 ~ili~GPPGtGKTt~a~ala 79 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFI 79 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999998
No 472
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=84.82 E-value=0.46 Score=46.04 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.9
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENG 80 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~ 80 (423)
+.-|.|.|.+++||||+.++|.+..
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~g 168 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKRG 168 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhcC
Confidence 4579999999999999999999543
No 473
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=84.82 E-value=0.4 Score=47.33 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.5
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...||.|+|.+++|||||+..+.
T Consensus 32 ~~~killlG~~~SGKST~~kq~~ 54 (362)
T 1zcb_A 32 RLVKILLLGAGESGKSTFLKQMR 54 (362)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CccEEEEECCCCCcHHHHHHHHH
Confidence 35899999999999999998874
No 474
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=84.77 E-value=0.42 Score=47.98 Aligned_cols=22 Identities=32% Similarity=0.451 Sum_probs=19.9
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
..-|.++|.|++||||+.+.|.
T Consensus 258 ~~lIil~G~pGSGKSTla~~L~ 279 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQEHL 279 (416)
T ss_dssp CCEEEEESCTTSSHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHH
Confidence 3568899999999999999998
No 475
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=84.75 E-value=1.2 Score=45.24 Aligned_cols=22 Identities=23% Similarity=0.498 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..+.|+|.||+|||+|..+|..
T Consensus 202 ~~~LL~G~pG~GKT~la~~la~ 223 (468)
T 3pxg_A 202 NNPVLIGEPGVGKTAIAEGLAQ 223 (468)
T ss_dssp CEEEEESCTTTTTHHHHHHHHH
T ss_pred CCeEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999983
No 476
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=84.63 E-value=1.1 Score=45.29 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-|-+.|.||+|||+|..++++
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~ 228 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVAN 228 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4589999999999999999994
No 477
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=84.62 E-value=0.4 Score=55.15 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=28.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhhcCcceecCCCCccccceEEEEecCC
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVENGKAQAANFPFCTIEPNVGIVAVPD 103 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg~~~~~vs~~p~tT~~~~~~~~~~~~ 103 (423)
+-++||||.+|+|||||++.|.|-. +|..|.+.+++
T Consensus 1059 Ge~v~ivG~sGsGKSTl~~~l~g~~------------~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1059 GQTLALVGSSGCGKSTVVQLLERFY------------DPMAGSVFLDG 1094 (1284)
T ss_dssp SSEEEEECSSSTTHHHHHHHHTTSS------------CCSEEEEESSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCc------------CCCCCEEEECC
Confidence 4589999999999999999999532 34567776655
No 478
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=84.59 E-value=0.68 Score=41.99 Aligned_cols=23 Identities=35% Similarity=0.322 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.-|.|+|.|++|||||...|..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~ 56 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQ 56 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45689999999999999999983
No 479
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=84.32 E-value=0.42 Score=47.21 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|+|+|.|++||||+..+|.+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~ 46 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQ 46 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHH
Confidence 5799999999999999999984
No 480
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=84.17 E-value=0.42 Score=42.33 Aligned_cols=21 Identities=19% Similarity=0.264 Sum_probs=19.2
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
-+.|.|.||+|||||..++..
T Consensus 47 ~~ll~G~~G~GKT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVGKTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 588999999999999999983
No 481
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=84.09 E-value=0.42 Score=42.91 Aligned_cols=20 Identities=35% Similarity=0.542 Sum_probs=18.2
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-.+|+|..++||||++.+|.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56899999999999999986
No 482
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=83.96 E-value=0.5 Score=45.51 Aligned_cols=20 Identities=35% Similarity=0.527 Sum_probs=19.0
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
-.+|+|..++|||||+.+|.
T Consensus 26 ~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 26 VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp EEEEECCTTTCSTHHHHHHH
T ss_pred cEEEECCCCCcHHHHHHHHH
Confidence 68999999999999999998
No 483
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.95 E-value=0.37 Score=46.44 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=19.5
Q ss_pred EEEEEecCCCCccHHHHHHhh
Q 014539 58 RAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.+.|.|.||+|||||+++|.+
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 399999999999999999985
No 484
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=83.88 E-value=1.1 Score=45.33 Aligned_cols=23 Identities=30% Similarity=0.342 Sum_probs=20.5
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..-|-+.|.||+|||+|..++++
T Consensus 215 prGvLLyGPPGTGKTllAkAiA~ 237 (434)
T 4b4t_M 215 PKGALMYGPPGTGKTLLARACAA 237 (434)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHH
T ss_pred CCeeEEECcCCCCHHHHHHHHHH
Confidence 35699999999999999999994
No 485
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=83.80 E-value=0.43 Score=46.04 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.4
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.-+.|.|.||+|||||++++.+
T Consensus 45 ~~~vli~G~~G~GKTtl~~~l~~ 67 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVVKFVLS 67 (386)
T ss_dssp CCCEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHH
Confidence 34689999999999999999984
No 486
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=83.70 E-value=0.49 Score=46.36 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=20.0
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-|+|+|.+++|||||-..|..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHH
Confidence 4699999999999999999984
No 487
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=83.69 E-value=3.8 Score=36.68 Aligned_cols=32 Identities=13% Similarity=0.062 Sum_probs=22.9
Q ss_pred ceEEEEecCCCcCCCCcccchhhHHhhhhhhcceEEEEEec
Q 014539 121 ASVEFVDIAGLVKGASQGEGLGNKFLSHIREVDSILQVVRC 161 (423)
Q Consensus 121 ~~i~lvDtpGl~~~~~~~~~l~~~~l~~ir~aD~il~Vvd~ 161 (423)
..++++|||+... ......+..||.+++|++.
T Consensus 112 yD~viiD~~~~~~---------~~~~~~~~~ad~vi~v~~~ 143 (237)
T 1g3q_A 112 FDFILIDCPAGLQ---------LDAMSAMLSGEEALLVTNP 143 (237)
T ss_dssp CSEEEEECCSSSS---------HHHHHHHTTCSEEEEEECS
T ss_pred CCEEEEECCCCcC---------HHHHHHHHHCCeEEEEecC
Confidence 4588999987531 2345667888999998874
No 488
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.33 E-value=0.69 Score=38.74 Aligned_cols=21 Identities=10% Similarity=-0.129 Sum_probs=19.4
Q ss_pred cEEEEEecCCCCccHHHHHHh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Lt 77 (423)
..|.|.|.||+|||++..++.
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~ 48 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFH 48 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGC
T ss_pred CcEEEECCCCccHHHHHHHHH
Confidence 459999999999999999998
No 489
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=83.23 E-value=0.76 Score=38.54 Aligned_cols=22 Identities=18% Similarity=0.237 Sum_probs=20.0
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
...|.|.|.||+|||++..++.
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~ 45 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLH 45 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHH
T ss_pred CCCEEEECCCCCCHHHHHHHHH
Confidence 3569999999999999999998
No 490
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=83.15 E-value=0.49 Score=41.44 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=18.8
Q ss_pred EEEEEecCCCCccHHHHHHh
Q 014539 58 RAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 58 ~I~ivG~pnvGKSTL~N~Lt 77 (423)
.+.|.|.||+|||||..++.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~ 59 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALA 59 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHH
Confidence 39999999999999999998
No 491
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=82.90 E-value=0.4 Score=48.51 Aligned_cols=22 Identities=36% Similarity=0.383 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-|.|.|.||+|||+|..++..
T Consensus 168 ~~vLL~GppGtGKT~lA~aia~ 189 (444)
T 2zan_A 168 RGILLFGPPGTGKSYLAKAVAT 189 (444)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999984
No 492
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=82.88 E-value=0.57 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+++.|.|.|.|+|||||+.++|.
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La 73 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALE 73 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999999999997
No 493
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=82.66 E-value=0.66 Score=42.36 Aligned_cols=22 Identities=32% Similarity=0.279 Sum_probs=20.6
Q ss_pred CcEEEEEecCCCCccHHHHHHh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
+.-|.+-|.+++||||+.+.|.
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~ 26 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILY 26 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHH
Confidence 5679999999999999999998
No 494
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=82.61 E-value=1.4 Score=44.13 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=19.9
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
.-|-+.|.||+|||+|..++++
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~ 204 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAH 204 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHH
Confidence 4589999999999999999994
No 495
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=82.58 E-value=0.62 Score=42.77 Aligned_cols=23 Identities=22% Similarity=0.218 Sum_probs=20.9
Q ss_pred CCcEEEEEecCCCCccHHHHHHh
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVV 77 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Lt 77 (423)
.++-|++.|.+++||||+.+.|.
T Consensus 20 ~~~~i~~~G~~g~GKst~~~~l~ 42 (223)
T 3ld9_A 20 GSMFITFEGIDGSGKTTQSHLLA 42 (223)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHH
Confidence 35679999999999999999998
No 496
>1wwt_A Threonyl-tRNA synthetase, cytoplasmic; TGS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ligase; NMR {Homo sapiens}
Probab=82.49 E-value=0.89 Score=35.03 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=40.1
Q ss_pred EEecC-CCChhhhhhhcchhhhhccEEEEEecchhhhhhCCHHHHHHcCCccccCCCceecCCCEEEEE
Q 014539 353 WTIRA-GMTAPQAAGVIHSDFEKGFIRAETVAYDDFVAAGSLAAAREKGLLRSEGKDYIVQEGDVMLFR 420 (423)
Q Consensus 353 w~i~~-gsta~~~A~~IHsD~~~~Fi~Aev~~~~d~~~~~~~~~~k~~g~~r~~Gkdy~v~dgDii~~~ 420 (423)
-.++. |+|+.|+|..||+.+.+..+-|+|= |+ .+..+|.+++|+.|+|-
T Consensus 22 ~~~~~~~~T~~dia~~i~~~l~~~~vaakvN-----------------g~--l~dL~~~l~~d~~ve~v 71 (88)
T 1wwt_A 22 VDAESWKTTPYQIACGISQGLADNTVIAKVN-----------------NV--VWDLDRPLEEDCTLELL 71 (88)
T ss_dssp EEEETTTCCHHHHHHHSSTTTGGGCCCEEES-----------------SS--EECSSSCCCSSEEEEEC
T ss_pred EEcccCCCCHHHHHHHhhhccccceEEEEEC-----------------CE--EECCCcCcCCCCEEEEE
Confidence 34566 8999999999999999998888742 55 46789999999988763
No 497
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=82.40 E-value=0.51 Score=48.76 Aligned_cols=25 Identities=28% Similarity=0.266 Sum_probs=21.7
Q ss_pred CCcEEEEEecCCCCccHHHHHHhhc
Q 014539 55 MSLRAGIVGLPNVGKSTLFNAVVEN 79 (423)
Q Consensus 55 ~~~~I~ivG~pnvGKSTL~N~Ltg~ 79 (423)
.+--++|+|.|++|||||++.+++.
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~ 304 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVEN 304 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 3457999999999999999999954
No 498
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=82.16 E-value=0.52 Score=47.28 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=20.1
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
--++|+|..++|||||++++.+
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~ 48 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISF 48 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999985
No 499
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=82.15 E-value=0.74 Score=40.87 Aligned_cols=23 Identities=35% Similarity=0.475 Sum_probs=20.3
Q ss_pred CcEEEEEecCCCCccHHHHHHhh
Q 014539 56 SLRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 56 ~~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
+.=|.|.|.+++|||||.-+|..
T Consensus 16 G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHH
Confidence 45689999999999999999984
No 500
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=82.03 E-value=0.7 Score=47.66 Aligned_cols=22 Identities=18% Similarity=0.197 Sum_probs=20.2
Q ss_pred cEEEEEecCCCCccHHHHHHhh
Q 014539 57 LRAGIVGLPNVGKSTLFNAVVE 78 (423)
Q Consensus 57 ~~I~ivG~pnvGKSTL~N~Ltg 78 (423)
..|.|.|.||+|||+|..+|..
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~ 63 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKF 63 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGG
T ss_pred CeeEeecCchHHHHHHHHHHHH
Confidence 4799999999999999999983
Done!