BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014540
         (423 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
           From Staphylococcus Aureus Subsp. Aureus Mu50
 pdb|3IPL|B Chain B, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
           From Staphylococcus Aureus Subsp. Aureus Mu50
 pdb|3IPL|C Chain C, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase
           From Staphylococcus Aureus Subsp. Aureus Mu50
          Length = 501

 Score = 33.1 bits (74), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 41/84 (48%), Gaps = 2/84 (2%)

Query: 88  AIMTTRSMELNWKTRALQVLPIFLLPGLSALAYSAFVSFN-RMCDRKD-QKTLERLRVER 145
           AI    S+  +  T  L VLPI+ + GLS L  +    F  R+ D+ + ++ L  ++ ER
Sbjct: 192 AIGCKESLGFDRDTNWLSVLPIYHISGLSVLLRAVIEGFTVRIVDKFNAEQILTMIKNER 251

Query: 146 KAKIDELKERTNYYTTQQLIQRYD 169
              I  + +  N+   Q L + Y+
Sbjct: 252 ITHISLVPQTLNWLMQQGLHEPYN 275


>pdb|3NQU|A Chain A, Crystal Structure Of Partially Trypsinized (Cenp-AH4)2
           HETEROTETRAMER
          Length = 140

 Score = 30.4 bits (67), Expect = 2.0,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 61  RRSQTW----RRM--SRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRALQVL 107
           RR Q W    R++  S HL+I  + F  +A    +  TR ++ NW+ +AL  L
Sbjct: 42  RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 94


>pdb|3R45|A Chain A, Structure Of A Cenp-A-Histone H4 Heterodimer In Complex
           With Chaperone Hjurp
          Length = 156

 Score = 30.4 bits (67), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 61  RRSQTW----RRM--SRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRALQVL 107
           RR Q W    R++  S HL+I  + F  +A    +  TR ++ NW+ +AL  L
Sbjct: 58  RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 110


>pdb|3AN2|A Chain A, The Structure Of The Centromeric Nucleosome Containing
           Cenp-A
 pdb|3AN2|E Chain E, The Structure Of The Centromeric Nucleosome Containing
           Cenp-A
          Length = 143

 Score = 30.0 bits (66), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 6/53 (11%)

Query: 61  RRSQTW----RRM--SRHLIIFTVVFEVIAVGYAIMTTRSMELNWKTRALQVL 107
           RR Q W    R++  S HL+I  + F  +A    +  TR ++ NW+ +AL  L
Sbjct: 45  RRRQGWLKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLAL 97


>pdb|3W0F|A Chain A, Crystal Structure Of Mouse Endonuclease Viii-like 3
           (mneil3)
          Length = 287

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 297 CGNCHMHNGLARKEDFPYITYYCPHCN 323
           C  CH    + R  +   +TY+CPHC 
Sbjct: 254 CDQCHSKITVCRFGENSRMTYFCPHCQ 280


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.315    0.131    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,713,114
Number of Sequences: 62578
Number of extensions: 435285
Number of successful extensions: 945
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 24
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)