Query 014542
Match_columns 423
No_of_seqs 250 out of 583
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 06:09:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014542.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014542hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04577 DUF563: Protein of un 100.0 3.4E-27 7.3E-32 219.0 19.9 200 126-359 2-205 (206)
2 KOG4698 Uncharacterized conser 99.9 3.9E-27 8.4E-32 242.2 12.7 267 114-406 169-472 (475)
3 COG4421 Capsular polysaccharid 99.7 2.1E-16 4.6E-21 156.2 18.2 238 105-401 113-357 (368)
4 cd05212 NAD_bind_m-THF_DH_Cycl 87.4 2.4 5.1E-05 38.2 7.3 69 247-327 30-99 (140)
5 PRK14178 bifunctional 5,10-met 82.6 4.1 8.9E-05 40.9 7.1 71 247-329 154-225 (279)
6 PF02882 THF_DHG_CYH_C: Tetrah 79.3 12 0.00026 34.5 8.5 70 247-328 38-108 (160)
7 cd01971 Nitrogenase_VnfN_like 63.3 18 0.0004 38.0 6.7 84 260-353 173-261 (427)
8 PRK14188 bifunctional 5,10-met 60.7 42 0.0009 34.0 8.3 69 247-327 160-229 (296)
9 cd00316 Oxidoreductase_nitroge 59.5 26 0.00057 35.8 6.9 83 260-352 166-251 (399)
10 cd01981 Pchlide_reductase_B Pc 54.7 60 0.0013 34.0 8.7 89 255-353 174-265 (430)
11 PRK14183 bifunctional 5,10-met 51.9 57 0.0012 32.9 7.6 70 247-328 159-229 (281)
12 PRK02910 light-independent pro 51.4 50 0.0011 35.9 7.6 99 243-353 158-261 (519)
13 PRK14190 bifunctional 5,10-met 51.1 96 0.0021 31.3 9.1 70 247-328 160-230 (284)
14 PLN02897 tetrahydrofolate dehy 50.2 82 0.0018 32.7 8.6 70 247-328 216-286 (345)
15 cd01972 Nitrogenase_VnfE_like 49.6 50 0.0011 34.7 7.2 83 260-352 179-265 (426)
16 cd01967 Nitrogenase_MoFe_alpha 46.5 65 0.0014 33.3 7.4 83 260-352 173-258 (406)
17 PRK14169 bifunctional 5,10-met 45.8 1.3E+02 0.0029 30.3 9.1 70 247-328 158-228 (282)
18 PRK14189 bifunctional 5,10-met 45.6 1.2E+02 0.0025 30.7 8.7 70 247-328 160-230 (285)
19 PF03358 FMN_red: NADPH-depend 45.5 58 0.0013 28.4 5.9 57 247-305 2-75 (152)
20 PLN02616 tetrahydrofolate dehy 45.3 80 0.0017 33.0 7.6 70 247-328 233-303 (364)
21 PF00148 Oxidored_nitro: Nitro 45.2 35 0.00077 35.0 5.2 95 247-352 146-244 (398)
22 PRK14182 bifunctional 5,10-met 44.6 1.4E+02 0.0031 30.0 9.1 70 247-328 159-229 (282)
23 PRK14186 bifunctional 5,10-met 44.5 1.4E+02 0.003 30.4 9.0 70 247-328 160-230 (297)
24 PRK14191 bifunctional 5,10-met 44.4 48 0.001 33.4 5.7 70 247-328 159-229 (285)
25 COG0190 FolD 5,10-methylene-te 44.3 69 0.0015 32.4 6.7 67 247-327 158-227 (283)
26 PRK14170 bifunctional 5,10-met 43.3 1E+02 0.0022 31.2 7.8 70 247-328 159-229 (284)
27 PRK14172 bifunctional 5,10-met 43.1 1.5E+02 0.0033 29.8 9.0 69 247-327 160-229 (278)
28 PRK14166 bifunctional 5,10-met 42.5 1.5E+02 0.0033 29.8 8.9 70 247-328 159-229 (282)
29 PRK14180 bifunctional 5,10-met 41.2 1.7E+02 0.0036 29.6 9.0 70 247-328 160-230 (282)
30 CHL00076 chlB photochlorophyll 39.6 1.5E+02 0.0032 32.3 9.0 98 243-352 163-265 (513)
31 cd02696 MurNAc-LAA N-acetylmur 39.4 76 0.0017 28.4 5.8 38 277-314 41-82 (172)
32 PRK14187 bifunctional 5,10-met 39.3 1.8E+02 0.0038 29.6 8.9 69 247-327 162-231 (294)
33 PRK14171 bifunctional 5,10-met 38.8 1.8E+02 0.004 29.4 8.9 70 247-328 161-231 (288)
34 PRK14177 bifunctional 5,10-met 37.0 2.1E+02 0.0047 28.8 9.0 70 247-328 161-231 (284)
35 PRK14194 bifunctional 5,10-met 36.3 97 0.0021 31.5 6.5 70 247-328 161-231 (301)
36 PRK14173 bifunctional 5,10-met 35.7 2.1E+02 0.0044 29.0 8.7 70 247-328 157-227 (287)
37 cd01080 NAD_bind_m-THF_DH_Cycl 35.6 89 0.0019 28.8 5.7 71 247-329 46-117 (168)
38 KOG0068 D-3-phosphoglycerate d 35.4 71 0.0015 33.4 5.4 64 245-313 229-292 (406)
39 PF01520 Amidase_3: N-acetylmu 34.9 69 0.0015 28.7 4.8 37 277-313 40-80 (175)
40 PRK14181 bifunctional 5,10-met 33.7 2.6E+02 0.0056 28.3 9.0 74 247-328 155-229 (287)
41 PF05222 AlaDh_PNT_N: Alanine 33.7 1.7E+02 0.0038 25.9 7.0 70 257-331 11-95 (136)
42 PRK14167 bifunctional 5,10-met 33.1 2.3E+02 0.0051 28.7 8.7 74 247-328 159-233 (297)
43 PRK14175 bifunctional 5,10-met 33.1 97 0.0021 31.3 5.9 70 247-328 160-230 (286)
44 PRK14174 bifunctional 5,10-met 32.0 81 0.0018 32.0 5.2 72 247-328 161-235 (295)
45 PRK14179 bifunctional 5,10-met 31.8 1.2E+02 0.0026 30.6 6.3 70 247-328 160-230 (284)
46 TIGR01862 N2-ase-Ialpha nitrog 29.2 1.5E+02 0.0033 31.4 6.9 85 259-353 203-290 (443)
47 PRK12480 D-lactate dehydrogena 29.0 70 0.0015 32.6 4.2 56 258-315 237-303 (330)
48 PRK06436 glycerate dehydrogena 27.8 46 0.00099 33.7 2.6 49 258-313 212-261 (303)
49 TIGR01278 DPOR_BchB light-inde 27.5 1.8E+02 0.0039 31.5 7.2 101 243-353 158-264 (511)
50 PRK10319 N-acetylmuramoyl-l-al 27.5 1.1E+02 0.0024 30.7 5.3 57 267-329 89-149 (287)
51 PF01488 Shikimate_DH: Shikima 27.5 52 0.0011 28.8 2.6 70 247-332 38-114 (135)
52 PRK15469 ghrA bifunctional gly 27.4 42 0.00091 34.0 2.3 53 258-314 229-281 (312)
53 cd01968 Nitrogenase_NifE_I Nit 27.1 1.9E+02 0.0042 30.0 7.2 85 259-353 170-257 (410)
54 PLN02516 methylenetetrahydrofo 26.9 2.6E+02 0.0057 28.5 7.8 70 247-328 169-239 (299)
55 PRK12548 shikimate 5-dehydroge 26.8 3.2E+02 0.0068 27.2 8.3 94 248-354 153-255 (289)
56 cd01977 Nitrogenase_VFe_alpha 26.7 1.8E+02 0.0039 30.4 6.9 85 259-353 174-261 (415)
57 cd01079 NAD_bind_m-THF_DH NAD 26.7 2E+02 0.0044 27.5 6.5 73 247-328 64-156 (197)
58 PF02826 2-Hacid_dh_C: D-isome 26.5 77 0.0017 29.0 3.7 57 249-310 122-178 (178)
59 PRK14168 bifunctional 5,10-met 24.7 2.6E+02 0.0057 28.4 7.3 72 247-328 163-237 (297)
60 COG0169 AroE Shikimate 5-dehyd 24.1 1.8E+02 0.004 29.2 6.1 85 247-353 152-244 (283)
61 TIGR02883 spore_cwlD N-acetylm 24.0 2E+02 0.0044 26.6 6.0 25 290-314 71-97 (189)
62 PF00389 2-Hacid_dh: D-isomer 23.9 1.7E+02 0.0036 25.1 5.1 78 262-354 8-86 (133)
63 cd01078 NAD_bind_H4MPT_DH NADP 23.1 2E+02 0.0043 26.3 5.8 72 247-328 54-129 (194)
64 PRK10431 N-acetylmuramoyl-l-al 22.5 1.5E+02 0.0034 31.7 5.4 49 266-314 223-275 (445)
65 COG4195 Phage-related replicat 22.4 2.3E+02 0.0049 27.2 5.8 63 248-311 39-109 (208)
66 PLN02928 oxidoreductase family 22.1 61 0.0013 33.3 2.3 54 258-315 265-318 (347)
67 PRK14176 bifunctional 5,10-met 21.7 4E+02 0.0086 27.0 7.9 70 247-328 166-236 (287)
68 cd01976 Nitrogenase_MoFe_alpha 21.7 3E+02 0.0066 28.9 7.4 84 259-352 184-270 (421)
69 PRK14185 bifunctional 5,10-met 21.2 4.1E+02 0.0088 27.0 7.9 74 247-328 159-233 (293)
70 KOG3922 Sulfotransferases [Pos 21.1 1.3E+02 0.0028 31.0 4.2 55 241-302 73-134 (361)
71 COG1920 Predicted nucleotidylt 21.1 1.2E+02 0.0025 29.3 3.7 58 290-355 103-160 (210)
72 PRK10792 bifunctional 5,10-met 20.6 3.3E+02 0.0071 27.5 7.0 70 247-328 161-231 (285)
73 TIGR01860 VNFD nitrogenase van 20.4 2.4E+02 0.0053 30.1 6.5 85 259-353 213-300 (461)
74 PRK06407 ornithine cyclodeamin 20.4 2.1E+02 0.0045 28.8 5.6 66 247-328 144-212 (301)
75 TIGR01284 alt_nitrog_alph nitr 20.3 2.9E+02 0.0062 29.5 7.0 84 260-353 212-298 (457)
76 PF02737 3HCDH_N: 3-hydroxyacy 20.1 1.8E+02 0.0039 26.8 4.8 61 263-333 94-155 (180)
No 1
>PF04577 DUF563: Protein of unknown function (DUF563); InterPro: IPR007657 This is a family of uncharacterised glycosyltransferases belonging to glycosyltransferase family 61. Sequences are further processed into a mature form.; GO: 0016757 transferase activity, transferring glycosyl groups
Probab=99.95 E-value=3.4e-27 Score=218.95 Aligned_cols=200 Identities=26% Similarity=0.405 Sum_probs=141.3
Q ss_pred CcchhHHHHHhhh-heeeccCcCCCCeeEEeeecccccchhhHHHHHHHhccC-CceeeeccCCCCCCeEeceEEEeccC
Q 014542 126 NLWHGLTAMVPFV-SWSIKNRCLRPNRWLLFHWGELRDQMGSWLYHLMQANFG-EVEIVGFEGGANGPYCFEKAAVMRHN 203 (423)
Q Consensus 126 Nl~H~~~dllpf~-s~~~~n~~~~~~r~il~~~g~~~~~m~~W~~~~l~~~Fs-~~~i~~~~~~~~~~vCF~~avv~~~~ 203 (423)
|.+|++.|++|.+ .+..... ..+..++... .....+|..+++ ..++ +...+... .++.+||++++++...
T Consensus 2 ~~gH~l~d~l~~l~~~~~~~~--~~~~~~l~~~---~~~~~~~~~~~l-~~lg~~~~~i~~~--~~~~~~~~~l~~~~~~ 73 (206)
T PF04577_consen 2 NFGHFLIDFLPRLWYLPQYIP--DSDIIILVPD---DFDNPPFIREIL-ELLGIPENRIKID--SDEPVCFERLIVPSPP 73 (206)
T ss_pred CCcEEHHHHHHHHHHHHHHCC--CCCeEEEEcC---CccccHHHHHHH-HHcCCCccEEEEc--CCCeEEECEEEEeCCC
Confidence 5679999999844 3332221 2222223221 113457877777 5555 33333222 4689999999998644
Q ss_pred CCCCchhhHhhHhhHHHHHHhhhcCCCCCCCCCccccCCCCeeEEEEEEe--cCCCcccCHHHHHHHHHhhccccCCcEE
Q 014542 204 EGSMGKARKLQVFDLLRCKARGFCGINPAGKGQEFNEKGQPIIRLTLLMR--RGSRSFKNATAVTEIFAEECAMVDGCVL 281 (423)
Q Consensus 204 ~gg~~~~~~~~~~d~lR~~a~~~~~i~~~~~~~~~~~~~~p~irv~li~R--~~~R~i~Ne~ev~~~l~~~~~~~~G~~v 281 (423)
..... +.......+|+..++..+++.. .+| |+++++| ++.|+|.|++||++.+++ .| +
T Consensus 74 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~---------~~p--~i~~i~R~~~~~R~i~Ne~el~~~l~~-----~~--~ 133 (206)
T PF04577_consen 74 YSPSD--FNPSFFPALRDRIRRKLNLPPP---------KRP--RILYISRRKSGSRRILNEDELLEILKK-----YG--F 133 (206)
T ss_pred ccccC--cCchHHHHHHHHHHHHhCCccc---------CCC--eEEEEecCCCCCCcCcCHHHHHHHHhh-----CC--e
Confidence 32110 1112223556666555565431 234 6799999 589999999999999986 45 6
Q ss_pred EEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhcccCCCcEEEEEeeCCcccccccchhHHHHHHhhcCCeeeeeec
Q 014542 282 KVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNMLFMDRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMRHRGAWW 359 (423)
Q Consensus 282 ~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~lFm~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~h~~~w~ 359 (423)
++++++++|+.||++++++|||+||+|||||+|++||+|||.||||+|+.+... .|..+|..+|+.|++.+.
T Consensus 134 ~~v~~~~~s~~eqv~~~~~a~viig~hGs~l~n~~F~~~~s~viei~~~~~~~~------~~~~~a~~~~~~y~~v~~ 205 (206)
T PF04577_consen 134 EVVDPEDLSFEEQVKLFASAKVIIGPHGSALTNLLFMPPGSTVIEIFPPNYYNR------HYRNLAQALGIHYYAVYG 205 (206)
T ss_pred EEEeCCCCCHHHHHHHhcCCCEEEecCchHhheeeecCCCCEEEEEeCCCCCCH------HHHHHHHHcCCeEEEEeC
Confidence 788899999999999999999999999999999999999999999998877643 699999999999876553
No 2
>KOG4698 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.94 E-value=3.9e-27 Score=242.24 Aligned_cols=267 Identities=19% Similarity=0.200 Sum_probs=176.5
Q ss_pred eEEEEeccCCCCCcchhHHH-HHh-hhhee--eccCcCCCCeeEEeeecccccchhhHHHHHHH---hccCCceeeeccC
Q 014542 114 LTFVSDTYYDYKNLWHGLTA-MVP-FVSWS--IKNRCLRPNRWLLFHWGELRDQMGSWLYHLMQ---ANFGEVEIVGFEG 186 (423)
Q Consensus 114 ~t~V~~~~~~~~Nl~H~~~d-llp-f~s~~--~~n~~~~~~r~il~~~g~~~~~m~~W~~~~l~---~~Fs~~~i~~~~~ 186 (423)
.+.|+.++.-.+|.||+|+| ++| |++.. ..| .+...+.+ ...+|++.... ..||+++.++++.
T Consensus 169 pa~vfs~Gg~tgn~yhdf~d~~ipL~it~~~~~~n----~ev~~li~------~~~~ww~~kf~Dvv~~lSn~~~v~~~~ 238 (475)
T KOG4698|consen 169 PAIVFSTGGYTGNEYHDFNDGIIPLFITEAELRFN----KEVQFLIT------ETHSWWDMKFGDVVRQLSNYPVVDFDA 238 (475)
T ss_pred chheeecCCcchhhHHHHHhhhhhhhcccchhccc----ccEEEEEE------EcchhhhhhHHHHHHhcCCCceEEecC
Confidence 33444444225899999999 566 56544 222 22222212 23455544443 4778899999887
Q ss_pred CCCCCeEeceEEEeccCCCCCchh---------hHhhHhhHHHHHHhhh----cCCCCCCCCCccccCCCCeeEEEEEEe
Q 014542 187 GANGPYCFEKAAVMRHNEGSMGKA---------RKLQVFDLLRCKARGF----CGINPAGKGQEFNEKGQPIIRLTLLMR 253 (423)
Q Consensus 187 ~~~~~vCF~~avv~~~~~gg~~~~---------~~~~~~d~lR~~a~~~----~~i~~~~~~~~~~~~~~p~irv~li~R 253 (423)
+++++||+.+++|...+..+..+ ...-.|..+..++|.. ++++.+. ..++| |+++++|
T Consensus 239 -~~~ThcF~~~~vgL~~h~~y~v~~t~~~~~~~~s~~~fr~~l~~a~~~~i~~~~~t~~~------~~kkp--ri~~lsR 309 (475)
T KOG4698|consen 239 -ELRTHCFKEAIVGLVSHFPYAVNPTQPPPNGTLSMLDFRNLLDKALSPRIPEANVTAPE------PWKKP--RITILSR 309 (475)
T ss_pred -CceEEEeeeeeeeeeecccccccCCcCCCccccccccHHHHHHHHhcccccccccCCcC------hhhCC--ceEEEec
Confidence 89999999999996333221111 1112344444555543 3333221 12234 5599999
Q ss_pred cCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhcccCCCcEEEEEeeCCcc
Q 014542 254 RGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNMLFMDRNSSVMEFFPKGWL 333 (423)
Q Consensus 254 ~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~lFm~pgs~viEi~P~g~~ 333 (423)
.++|.|+|++||.+.+++ .|++|.+++.+..++..|+++.+++||+||+|||||||++|+||++++|||.|+|..
T Consensus 310 ~~~r~Ilne~el~~~~~~-----~gf~v~~~~~~~t~v~~~~~i~~s~~vmiGvHGa~lth~lfl~~~~~~iqi~pcg~~ 384 (475)
T KOG4698|consen 310 AGSRAILNEDELPRMLED-----IGFEVSVLRPDRTEVAKQLRITNSSDVMIGVHGAGLTHLLFLPPWAGVIQIYPCGDP 384 (475)
T ss_pred ccchhhhcchhhhHHHHh-----CCCceEEecccccchhhhhheeeccceeeeccCccceeEEecCCcceEEEEEECCCc
Confidence 999999999999999998 599999999888999999999999999999999999999999999999999999976
Q ss_pred cccccchhHHHHHHhhcCCeeeeeecCC-C------CCCCC-----CCC---CCc-cccc-ccccCCccccchhhHHHHH
Q 014542 334 ELAGVGQYAHHWMADQSGMRHRGAWWDP-L------VQEEC-----PTP---HND-LECF-KFDKNGQVGHNETYFAEWA 396 (423)
Q Consensus 334 ~~~g~~~~~Y~~lA~~~Gl~h~~~w~d~-~------~~~~c-----~~~---~~~-~~C~-~~yk~q~V~ln~t~f~~~l 396 (423)
.|++. .+|..-|+.++++|.++--.+ . ++.+. |++ .++ ..-+ .+...|+|+++..||++.+
T Consensus 385 ~w~a~--~a~~~p~k~~~l~y~~ykI~~~es~l~~~y~~d~~~v~dp~s~~~~~f~~~k~~~yl~~q~v~ld~nRf~~~~ 462 (475)
T KOG4698|consen 385 GWAAK--LARLRPAKYMTLEYAEYKIRAEESELYHKYGGDNTIVFDPISFQKKGFEETKKKVYLELQAVRLDINRFRKTL 462 (475)
T ss_pred cchhh--hhhccccceeccccceeEEeecccceeeeccCCCceecccceeccccceeeeeeeeEeEeeeehhhhhcccch
Confidence 66432 244455555555543321000 0 11111 111 111 1112 3556799999999999998
Q ss_pred HHHHHHHHHh
Q 014542 397 RSILNQVRIS 406 (423)
Q Consensus 397 ~~vl~~l~~~ 406 (423)
-+++.....+
T Consensus 463 ~~a~~~~~~~ 472 (475)
T KOG4698|consen 463 VKAYLKEITQ 472 (475)
T ss_pred hHHHHHHHHh
Confidence 8888776655
No 3
>COG4421 Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism]
Probab=99.72 E-value=2.1e-16 Score=156.18 Aligned_cols=238 Identities=18% Similarity=0.192 Sum_probs=147.0
Q ss_pred CCceeeecCeEEEEeccCCCCCcchhHHHHHhhhhe-eeccCcCCCCeeEEeeecccccchhhHHHHHHHhccC-Cceee
Q 014542 105 PESATLLKGLTFVSDTYYDYKNLWHGLTAMVPFVSW-SIKNRCLRPNRWLLFHWGELRDQMGSWLYHLMQANFG-EVEIV 182 (423)
Q Consensus 105 p~~~~~i~G~t~V~~~~~~~~Nl~H~~~dllpf~s~-~~~n~~~~~~r~il~~~g~~~~~m~~W~~~~l~~~Fs-~~~i~ 182 (423)
|+++.+++|-..+..-.+ ..|.-|.+.+++|++.. +..+- . .+-.++ ......|...++ .+++ +-+++
T Consensus 113 ~edAp~L~r~~v~~~~~~-~~~Yghflle~Lp~l~~i~~l~i-~-~~~pLl------~P~~~~wqadll-~m~~~~~~ii 182 (368)
T COG4421 113 PEDAPRLPRGAVFKEWGF-SFEYGHFLLENLPYLWQIKSLGI-L-SDPPLL------YPRLTEWQADLL-FMAGPDCPII 182 (368)
T ss_pred CcCCCcCCCcceeccccc-ccccchhHHhhhHHHHHHhhhcc-c-ccCccc------CCcchHHHHhHH-hhcCCCCcee
Confidence 455558888887653222 35777888899996421 11111 0 011111 112344887777 4555 66776
Q ss_pred eccCCCCCCeEeceEEEeccCCCCCchhhHhhHhhHHHHHHhhhcCCCCCCCCCccccCCCCeeEEEEEEec--CCCccc
Q 014542 183 GFEGGANGPYCFEKAAVMRHNEGSMGKARKLQVFDLLRCKARGFCGINPAGKGQEFNEKGQPIIRLTLLMRR--GSRSFK 260 (423)
Q Consensus 183 ~~~~~~~~~vCF~~avv~~~~~gg~~~~~~~~~~d~lR~~a~~~~~i~~~~~~~~~~~~~~p~irv~li~R~--~~R~i~ 260 (423)
.. ...||-..+++...+.-.++ + ++++.+..+-.-+..+ .+.+ +.+|+||+ ..|+++
T Consensus 183 ~~----~p~V~~~~avl~~~~s~~~~-----h--a~l~~~~eR~~~~~~~--------~~~a--dkiYVSR~~qS~R~lv 241 (368)
T COG4421 183 AT----APAVPLGPAVLPVSGSPRYT-----H--ALLAWKDERVIAIKGK--------GKVA--DKIYVSRKAQSMRVLV 241 (368)
T ss_pred ec----ccceeecccccCCCCCchhh-----h--HHHHHHhhhhhcccCC--------CCCc--ceEEEechhhHHHHhh
Confidence 64 56888888877643222111 1 2222222111111211 1112 23899996 579999
Q ss_pred CHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhcccCCCcEEEEEee--CCccccccc
Q 014542 261 NATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNMLFMDRNSSVMEFFP--KGWLELAGV 338 (423)
Q Consensus 261 Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~lFm~pgs~viEi~P--~g~~~~~g~ 338 (423)
||+||...+++ .| +++|.+|+++..||+++|+.|.|++|+||+||.|.+|+++|+.||||-| .+++
T Consensus 242 nE~evE~~~q~-----~G--~~IVrPEtl~~~eQ~~LFr~AkvIvG~~GS~laNavF~~~~~kvvEI~~~~~~~~----- 309 (368)
T COG4421 242 NEEEVERLLQR-----SG--LTIVRPETLGPREQARLFRKAKVIVGPHGSGLANAVFAAPGCKVVEIQPGTTNFR----- 309 (368)
T ss_pred CHHHHHHHHHh-----cC--cEEEechhcCHHHHHHHhhcceEEeccccchhhhheecCCCceEEEeccCCCcch-----
Confidence 99999999998 57 6789999999999999999999999999999999999999999999999 5553
Q ss_pred chhHHHH-HHhhcCCeeeeeecCCCCCCCCCCCCCcccccccccCCccccchhhHHHHHHHHHH
Q 014542 339 GQYAHHW-MADQSGMRHRGAWWDPLVQEECPTPHNDLECFKFDKNGQVGHNETYFAEWARSILN 401 (423)
Q Consensus 339 ~~~~Y~~-lA~~~Gl~h~~~w~d~~~~~~c~~~~~~~~C~~~yk~q~V~ln~t~f~~~l~~vl~ 401 (423)
..|.. ++...|.-+. ++.++ +..|+.+ .-++.+|+..+.++++....
T Consensus 310 --s~~vr~~~~~~g~~~~-~~ve~--q~nk~~~-----------~~pl~~~l~~~~af~~~~~~ 357 (368)
T COG4421 310 --SFWVRMANYMSGDYYP-GYVEH--QTNKEAL-----------EDPLKINLDEAIAFLRRHDR 357 (368)
T ss_pred --HHHHHHhhhcccceee-ccccc--CCCCCCC-----------CCcccccchHHHHHhhhhhH
Confidence 23443 4444444332 23332 2223332 23566666666666554433
No 4
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=87.42 E-value=2.4 Score=38.16 Aligned_cols=69 Identities=12% Similarity=0.197 Sum_probs=49.1
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi 325 (423)
+++++.|.... -..+...|.+ .|..|.+....+-++.| .+++|||+|+.=|.. +-..=|++||++||
T Consensus 30 ~v~VvGrs~~v----G~pla~lL~~-----~gatV~~~~~~t~~l~~---~v~~ADIVvsAtg~~~~i~~~~ikpGa~Vi 97 (140)
T cd05212 30 KVLVVGRSGIV----GAPLQCLLQR-----DGATVYSCDWKTIQLQS---KVHDADVVVVGSPKPEKVPTEWIKPGATVI 97 (140)
T ss_pred EEEEECCCchH----HHHHHHHHHH-----CCCEEEEeCCCCcCHHH---HHhhCCEEEEecCCCCccCHHHcCCCCEEE
Confidence 55888876432 5567777776 47888888765555544 678999999998865 33444899999999
Q ss_pred EE
Q 014542 326 EF 327 (423)
Q Consensus 326 Ei 327 (423)
-+
T Consensus 98 dv 99 (140)
T cd05212 98 NC 99 (140)
T ss_pred Ec
Confidence 43
No 5
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.56 E-value=4.1 Score=40.87 Aligned_cols=71 Identities=11% Similarity=0.172 Sum_probs=50.9
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
+++++.|...+ -.-+...|.. .|..|.+....+-.+ -+.+.+|||+|+.=| +++..-=+.+||++||
T Consensus 154 ~V~ViGrs~~v----Grpla~lL~~-----~~atVtv~hs~t~~L---~~~~~~ADIvI~Avgk~~lv~~~~vk~GavVI 221 (279)
T PRK14178 154 RAVVVGRSIDV----GRPMAALLLN-----ADATVTICHSKTENL---KAELRQADILVSAAGKAGFITPDMVKPGATVI 221 (279)
T ss_pred EEEEECCCccc----cHHHHHHHHh-----CCCeeEEEecChhHH---HHHHhhCCEEEECCCcccccCHHHcCCCcEEE
Confidence 56899987433 3345555654 477788777654333 346679999999999 8777777789999999
Q ss_pred EEee
Q 014542 326 EFFP 329 (423)
Q Consensus 326 Ei~P 329 (423)
.+--
T Consensus 222 DVgi 225 (279)
T PRK14178 222 DVGI 225 (279)
T ss_pred Eeec
Confidence 9863
No 6
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=79.25 E-value=12 Score=34.47 Aligned_cols=70 Identities=13% Similarity=0.289 Sum_probs=44.6
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.-+...|.+ .|..|.+....+-.+.+ .+.+|||+|+.-| +++-..=|.+||++||
T Consensus 38 ~v~VvGrs~---~V-G~Pla~lL~~-----~~atVt~~h~~T~~l~~---~~~~ADIVVsa~G~~~~i~~~~ik~gavVI 105 (160)
T PF02882_consen 38 KVVVVGRSN---IV-GKPLAMLLLN-----KGATVTICHSKTKNLQE---ITRRADIVVSAVGKPNLIKADWIKPGAVVI 105 (160)
T ss_dssp EEEEE-TTT---TT-HHHHHHHHHH-----TT-EEEEE-TTSSSHHH---HHTTSSEEEE-SSSTT-B-GGGS-TTEEEE
T ss_pred EEEEECCcC---CC-ChHHHHHHHh-----CCCeEEeccCCCCcccc---eeeeccEEeeeeccccccccccccCCcEEE
Confidence 568998764 22 3346667776 47788887776655555 4569999999988 6777777999999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+-
T Consensus 106 DvG 108 (160)
T PF02882_consen 106 DVG 108 (160)
T ss_dssp E--
T ss_pred ecC
Confidence 773
No 7
>cd01971 Nitrogenase_VnfN_like Nitrogenase_vnfN_like: VnfN subunit of the VnfEN complex-like. This group in addition to VnfN contains a subset of the beta subunit of the nitrogenase MoFe protein and NifN-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protien for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=63.35 E-value=18 Score=37.98 Aligned_cols=84 Identities=8% Similarity=0.098 Sum_probs=60.5
Q ss_pred cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec---hhhhhhhcccCCCcEEEEE--eeCCccc
Q 014542 260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH---GAQLTNMLFMDRNSSVMEF--FPKGWLE 334 (423)
Q Consensus 260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH---GAgLTN~lFm~pgs~viEi--~P~g~~~ 334 (423)
-|.+|+.+.|++ .|+++..+.....++ ++++-+.+|..-|.++ |-.++..|.-+=|.-.+.+ +|.|.-.
T Consensus 173 ~d~~elk~lL~~-----~Gl~v~~~~~~~~~~-~ei~~~~~A~~niv~~~~~g~~~a~~L~~~~giP~i~~~~~P~G~~~ 246 (427)
T cd01971 173 GDLEEIKRVLEG-----IGLKVNILFGPESNG-EELRSIPKAQFNLVLSPWVGLEFAQHLEEKYGQPYIHSPTLPIGAKA 246 (427)
T ss_pred ccHHHHHHHHHH-----CCCeEEEEECCCCCH-HHHHhcccCcEEEEEcHhhHHHHHHHHHHHhCCceEecCCCccCHHH
Confidence 578999999987 698988887766675 8899999998555554 4456666665667766666 7888654
Q ss_pred ccccchhHHHHHHhhcCCe
Q 014542 335 LAGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 335 ~~g~~~~~Y~~lA~~~Gl~ 353 (423)
. ..+++.+++.+|+.
T Consensus 247 t----~~~l~~i~~~~g~~ 261 (427)
T cd01971 247 T----AEFLRQVAKFAGIE 261 (427)
T ss_pred H----HHHHHHHHHHhCCC
Confidence 3 24667777777764
No 8
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.72 E-value=42 Score=34.02 Aligned_cols=69 Identities=9% Similarity=0.237 Sum_probs=48.2
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
+|++|.|.+.- -.-+...|.+ .|+.|.+....+.++. ++.++|||+|.+=| +.+....|++||++||
T Consensus 160 ~V~viGrs~~m----G~PmA~~L~~-----~g~tVtv~~~rT~~l~---e~~~~ADIVIsavg~~~~v~~~~lk~GavVI 227 (296)
T PRK14188 160 NAVVIGRSNLV----GKPMAQLLLA-----ANATVTIAHSRTRDLP---AVCRRADILVAAVGRPEMVKGDWIKPGATVI 227 (296)
T ss_pred EEEEEcCCcch----HHHHHHHHHh-----CCCEEEEECCCCCCHH---HHHhcCCEEEEecCChhhcchheecCCCEEE
Confidence 55899987421 2335556655 4888887754444443 45678999998776 4577778899999999
Q ss_pred EE
Q 014542 326 EF 327 (423)
Q Consensus 326 Ei 327 (423)
.+
T Consensus 228 Dv 229 (296)
T PRK14188 228 DV 229 (296)
T ss_pred Ec
Confidence 87
No 9
>cd00316 Oxidoreductase_nitrogenase The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. This group contains both alpha and beta subunits of component 1 of the three known genetically distinct types of nitrogenase systems: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium-dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase) and, both subunits of Protochlorophyllide (Pchlide) reductase and chlorophyllide (chlide) reductase. The nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). The most widespread and best characterized nitrogenase is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers whose alpha and beta subunits are similar to the alpha and beta subunits of MoFe. For MoFe, each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molec
Probab=59.49 E-value=26 Score=35.81 Aligned_cols=83 Identities=11% Similarity=0.105 Sum_probs=61.7
Q ss_pred cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEee---chhhhhhhcccCCCcEEEEEeeCCccccc
Q 014542 260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASP---HGAQLTNMLFMDRNSSVMEFFPKGWLELA 336 (423)
Q Consensus 260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgv---HGAgLTN~lFm~pgs~viEi~P~g~~~~~ 336 (423)
.|..|+.+.|++ .|+++..+.....|+ |+++-+.+|++-|.+ +|..++..|=-+-|.-.+...|.|.-..
T Consensus 166 ~d~~el~~ll~~-----~G~~v~~~~~~~~s~-~~i~~~~~A~~nlv~~~~~g~~~a~~l~~~~g~p~~~~~p~G~~~t- 238 (399)
T cd00316 166 GDLRELKRLLEE-----MGIRVNALFDGGTTV-EELRELGNAKLNLVLCRESGLYLARYLEEKYGIPYILINPIGLEAT- 238 (399)
T ss_pred hhHHHHHHHHHH-----cCCcEEEEcCCCCCH-HHHHhhccCcEEEEecHhHHHHHHHHHHHHhCCCeEEeCCcCHHHH-
Confidence 588999999987 688888887766776 667778888877777 5666777665555666666668886543
Q ss_pred ccchhHHHHHHhhcCC
Q 014542 337 GVGQYAHHWMADQSGM 352 (423)
Q Consensus 337 g~~~~~Y~~lA~~~Gl 352 (423)
..+++.+++.+|+
T Consensus 239 ---~~~l~~i~~~~g~ 251 (399)
T cd00316 239 ---DAFLRKLAELFGI 251 (399)
T ss_pred ---HHHHHHHHHHhCC
Confidence 3478888998885
No 10
>cd01981 Pchlide_reductase_B Pchlide_reductase_B: B protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=54.74 E-value=60 Score=34.03 Aligned_cols=89 Identities=13% Similarity=0.132 Sum_probs=64.7
Q ss_pred CCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec---hhhhhhhcccCCCcEEEEEeeCC
Q 014542 255 GSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH---GAQLTNMLFMDRNSSVMEFFPKG 331 (423)
Q Consensus 255 ~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH---GAgLTN~lFm~pgs~viEi~P~g 331 (423)
+...--|..|+.+.|++ .|.++..+...+.++ |+++-+.+|++-|.++ |..++..|--.=|.-.+...|.|
T Consensus 174 ~~~~~~d~~ei~~lL~~-----~Gl~v~~~~~~~~~~-~~i~~~~~A~lniv~~~~~~~~~a~~L~~~~GiP~~~~~p~G 247 (430)
T cd01981 174 GFHNRHDCRELKRLLHT-----LGIEVNVVIPEGASV-DDLNELPKAWFNIVPYREYGLSAALYLEEEFGMPSVKITPIG 247 (430)
T ss_pred CCCCcchHHHHHHHHHH-----cCCeEEEEEcCCCCH-HHHHhhhhCeEEEEecHHHHHHHHHHHHHHhCCCeEeccCCC
Confidence 44546788999999997 688888887777776 6777788888877765 44566666545566667778988
Q ss_pred cccccccchhHHHHHHhhcCCe
Q 014542 332 WLELAGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 332 ~~~~~g~~~~~Y~~lA~~~Gl~ 353 (423)
.... ...++.+++.+|+.
T Consensus 248 ~~~t----~~~l~~i~~~~g~~ 265 (430)
T cd01981 248 VVAT----ARFLREIQELLGIQ 265 (430)
T ss_pred hHHH----HHHHHHHHHHhCCc
Confidence 7543 24677888888865
No 11
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.92 E-value=57 Score=32.87 Aligned_cols=70 Identities=7% Similarity=0.101 Sum_probs=47.1
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++. .=+...|.+ .|..|.+....+-.+ -+.+.+|||+|+.=| ++|-..=|.+||++||
T Consensus 159 ~vvViGrS~---~VG-~Pla~lL~~-----~~AtVti~hs~T~~l---~~~~~~ADIvV~AvGkp~~i~~~~vk~gavvI 226 (281)
T PRK14183 159 DVCVVGASN---IVG-KPMAALLLN-----ANATVDICHIFTKDL---KAHTKKADIVIVGVGKPNLITEDMVKEGAIVI 226 (281)
T ss_pred EEEEECCCC---cch-HHHHHHHHH-----CCCEEEEeCCCCcCH---HHHHhhCCEEEEecCcccccCHHHcCCCcEEE
Confidence 568999863 111 124445554 366777665443333 457899999999877 6677777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+=
T Consensus 227 DvG 229 (281)
T PRK14183 227 DIG 229 (281)
T ss_pred Eee
Confidence 974
No 12
>PRK02910 light-independent protochlorophyllide reductase subunit B; Provisional
Probab=51.41 E-value=50 Score=35.87 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=68.9
Q ss_pred CCeeEEEEEEe--cCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccC
Q 014542 243 QPIIRLTLLMR--RGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMD 319 (423)
Q Consensus 243 ~p~irv~li~R--~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~ 319 (423)
++.+ -||.= -+.+.--|..|+.+.|++ .|.++.++...+.++ ++++-+.+|++-|.+++ .|..=.-+|.
T Consensus 158 ~~~V--NIiG~~~l~f~~~~D~~EikrlL~~-----~Gi~vn~v~p~g~s~-~di~~l~~A~~nivl~~~~g~~~A~~Le 229 (519)
T PRK02910 158 RPSV--NLLGPTALGFHHRDDLTELRRLLAT-----LGIDVNVVAPLGASP-ADLKRLPAAWFNVVLYREIGESAARYLE 229 (519)
T ss_pred CCeE--EEEecCccCCCChhHHHHHHHHHHH-----cCCeEEEEeCCCCCH-HHHHhcccCcEEEEeCHHHHHHHHHHHH
Confidence 3444 44443 245555778899999987 699998888777775 78888999999999887 5655555654
Q ss_pred C--CcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542 320 R--NSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 320 p--gs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~ 353 (423)
. |.-.+...|.|.... ..+-+.+++.+|+.
T Consensus 230 e~fGiP~i~~~PiG~~~T----~~fL~~la~~~g~~ 261 (519)
T PRK02910 230 REFGQPYVKTVPIGVGAT----ARFIREVAELLNLD 261 (519)
T ss_pred HHhCCcccccccccHHHH----HHHHHHHHHHhCCC
Confidence 3 444566789886543 23556677777764
No 13
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=51.09 E-value=96 Score=31.29 Aligned_cols=70 Identities=10% Similarity=0.225 Sum_probs=46.7
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-++ -+.+++|||+|+.=| +++-..=|.+||++||
T Consensus 160 ~vvViGrS~---iV-G~Pla~lL~~-----~~atVt~chs~t~~l---~~~~~~ADIvI~AvG~p~~i~~~~ik~gavVI 227 (284)
T PRK14190 160 HVVVVGRSN---IV-GKPVGQLLLN-----ENATVTYCHSKTKNL---AELTKQADILIVAVGKPKLITADMVKEGAVVI 227 (284)
T ss_pred EEEEECCCC---cc-HHHHHHHHHH-----CCCEEEEEeCCchhH---HHHHHhCCEEEEecCCCCcCCHHHcCCCCEEE
Confidence 568999874 11 1224445554 367787776554333 247899999998776 4566666779999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+-
T Consensus 228 DvG 230 (284)
T PRK14190 228 DVG 230 (284)
T ss_pred Eee
Confidence 974
No 14
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=50.18 E-value=82 Score=32.69 Aligned_cols=70 Identities=9% Similarity=0.171 Sum_probs=49.1
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++.- =+...|.+ .|..|.+....+-+ .-+..++|||+|+.=| +++...=|.+||++||
T Consensus 216 ~vvVIGRS~---iVGk-Pla~LL~~-----~~ATVTicHs~T~n---l~~~~~~ADIvIsAvGkp~~v~~d~vk~GavVI 283 (345)
T PLN02897 216 NAVVIGRSN---IVGL-PMSLLLQR-----HDATVSTVHAFTKD---PEQITRKADIVIAAAGIPNLVRGSWLKPGAVVI 283 (345)
T ss_pred EEEEECCCc---cccH-HHHHHHHH-----CCCEEEEEcCCCCC---HHHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 568999874 2211 24445554 36778777665544 3557899999998776 6788888899999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 284 DVG 286 (345)
T PLN02897 284 DVG 286 (345)
T ss_pred Ecc
Confidence 873
No 15
>cd01972 Nitrogenase_VnfE_like Nitrogenase_VnfE_like: VnfE subunit of the VnfEN complex_like. This group in addition to VnfE contains a subset of the alpha subunit of the nitrogenase MoFe protein and NifE-like proteins. The nitrogenase enzyme system catalyzes the ATP-dependent reduction of dinitrogen to ammonia. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of MoFe protein of the molybdenum(Mo)-nitrogenase. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to NifEN where it is further processed to FeMoco. VnfEN may similarly be a scaffolding protein for the iron-vanadium cofactor (FeVco) of the vanadium-dependent (V)-nitrogenase. NifE and NifN are essential for the Mo-nitrogenase, VnfE and VnfN are not essential for the V-nitrogenase. NifE and NifN can substitute when the vnfEN genes are inactivated.
Probab=49.64 E-value=50 Score=34.67 Aligned_cols=83 Identities=10% Similarity=-0.005 Sum_probs=59.9
Q ss_pred cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhccc--CCCcEEEEE-eeCCcccc
Q 014542 260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFM--DRNSSVMEF-FPKGWLEL 335 (423)
Q Consensus 260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm--~pgs~viEi-~P~g~~~~ 335 (423)
-|..|+.+.|++ .|+++..+...+.++ +.++-+.+|..-|.++. +|+.-.-+| +=|.-.+++ +|.|.-..
T Consensus 179 ~d~~ei~~lL~~-----~Gi~v~~~~~~~~~~-~ei~~~~~A~lniv~~~~~g~~~a~~Lee~~GiP~~~~~~P~G~~~T 252 (426)
T cd01972 179 EDVDEFKRLLNE-----LGLRVNAIIAGGCSV-EELERASEAAANVTLCLDLGYYLGAALEQRFGVPEIKAPQPYGIEAT 252 (426)
T ss_pred ccHHHHHHHHHH-----cCCeEEEEeCCCCCH-HHHHhcccCCEEEEEChhHHHHHHHHHHHHhCCCeEecCCccCHHHH
Confidence 678999999997 698888887777777 66777899988888774 444333444 446667776 68886443
Q ss_pred cccchhHHHHHHhhcCC
Q 014542 336 AGVGQYAHHWMADQSGM 352 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl 352 (423)
..+++.+|+..|+
T Consensus 253 ----~~~l~~ia~~~g~ 265 (426)
T cd01972 253 ----DKWLREIAKVLGM 265 (426)
T ss_pred ----HHHHHHHHHHhCC
Confidence 2467778888886
No 16
>cd01967 Nitrogenase_MoFe_alpha_like Nitrogenase_MoFe_alpha_like: Nitrogenase MoFe protein, alpha subunit_like. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. Three genetically distinct types of nitrogenase systems are known to exist: a molybdenum-dependent nitrogenase (Mo-nitrogenase), a vanadium dependent nitrogenase (V-nitrogenase), and an iron-only nitrogenase (Fe-nitrogenase). These nitrogenase systems consist of component 1 (MoFe protein, VFe protein or, FeFe protein respectively) and, component 2 (Fe protein). This group contains the alpha subunit of component 1 of all three different forms. The most widespread and best characterized of these systems is the Mo-nitrogenase. MoFe is an alpha2beta2 tetramer, the alternative nitrogenases are alpha2beta2delta2 hexamers having alpha and beta subunits similar to the alpha and beta subunits of MoFe. The role of the delta subunit is unknown. For MoFe, each alphabeta pair of subunits contains one
Probab=46.52 E-value=65 Score=33.31 Aligned_cols=83 Identities=13% Similarity=0.049 Sum_probs=58.5
Q ss_pred cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec---hhhhhhhcccCCCcEEEEEeeCCccccc
Q 014542 260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH---GAQLTNMLFMDRNSSVMEFFPKGWLELA 336 (423)
Q Consensus 260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH---GAgLTN~lFm~pgs~viEi~P~g~~~~~ 336 (423)
-|..|+.+.|++ .|+++..+.....++ |+++-+.+|.+-|.+. |-.++..|-=+=|.-.+...|.|.-..
T Consensus 173 ~d~~el~~lL~~-----~Gi~~~~~~~~~~~~-~~i~~~~~A~~niv~~~~~~~~~a~~L~~r~GiP~~~~~p~G~~~t- 245 (406)
T cd01967 173 GDAWVIKPLLEE-----LGIRVNATFTGDGTV-DELRRAHRAKLNLVHCSRSMNYLAREMEERYGIPYMEVNFYGFEDT- 245 (406)
T ss_pred hhHHHHHHHHHH-----cCCEEEEEeCCCCCH-HHHhhCccCCEEEEEChHHHHHHHHHHHHhhCCCEEEecCCcHHHH-
Confidence 378999999997 688888877777787 6667799998766654 444554443344555666677776433
Q ss_pred ccchhHHHHHHhhcCC
Q 014542 337 GVGQYAHHWMADQSGM 352 (423)
Q Consensus 337 g~~~~~Y~~lA~~~Gl 352 (423)
...++.+++.+|.
T Consensus 246 ---~~~l~~l~~~lg~ 258 (406)
T cd01967 246 ---SESLRKIAKFFGD 258 (406)
T ss_pred ---HHHHHHHHHHhCC
Confidence 3467888888887
No 17
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.81 E-value=1.3e+02 Score=30.30 Aligned_cols=70 Identities=9% Similarity=0.224 Sum_probs=48.6
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+ -+...+|||+|+.=| +++-..=|.+||++||
T Consensus 158 ~vvViGrS~---iV-GkPla~lL~~-----~~atVtichs~T~~l---~~~~~~ADIvI~AvG~p~~i~~~~vk~GavVI 225 (282)
T PRK14169 158 RVVIVGRSN---IV-GRPLAGLMVN-----HDATVTIAHSKTRNL---KQLTKEADILVVAVGVPHFIGADAVKPGAVVI 225 (282)
T ss_pred EEEEECCCc---cc-hHHHHHHHHH-----CCCEEEEECCCCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCcEEE
Confidence 568999874 11 1224455554 367777776655444 346789999998777 6777777899999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 226 DvG 228 (282)
T PRK14169 226 DVG 228 (282)
T ss_pred Eee
Confidence 874
No 18
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=45.60 E-value=1.2e+02 Score=30.71 Aligned_cols=70 Identities=10% Similarity=0.199 Sum_probs=47.0
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+. + -.-+...|.+ .|..|.+....+-.+ -+.+.+|||+|+.=| +++-+.=|++||++||
T Consensus 160 ~vvViGrs~i---V-GkPla~lL~~-----~~atVt~~hs~t~~l---~~~~~~ADIVV~avG~~~~i~~~~ik~gavVI 227 (285)
T PRK14189 160 HAVVIGRSNI---V-GKPMAMLLLQ-----AGATVTICHSKTRDL---AAHTRQADIVVAAVGKRNVLTADMVKPGATVI 227 (285)
T ss_pred EEEEECCCCc---c-HHHHHHHHHH-----CCCEEEEecCCCCCH---HHHhhhCCEEEEcCCCcCccCHHHcCCCCEEE
Confidence 5589988742 1 2235556655 477777765443333 356789999998877 4566666889999998
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 228 DVG 230 (285)
T PRK14189 228 DVG 230 (285)
T ss_pred Ecc
Confidence 874
No 19
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=45.46 E-value=58 Score=28.40 Aligned_cols=57 Identities=16% Similarity=0.220 Sum_probs=39.0
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCC--C---------------HHHHHHHhcCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDL--S---------------FCDQVKVMTGTDVVA 305 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~l--s---------------~~eQv~l~~~adVlI 305 (423)
||++|.=. .|.=-|-..+++.+.+.+.. .|.+++++++.++ + +.+-++.+.+||.+|
T Consensus 2 kilii~gS-~r~~~~t~~l~~~~~~~l~~-~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI 75 (152)
T PF03358_consen 2 KILIINGS-PRKNSNTRKLAEAVAEQLEE-AGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGII 75 (152)
T ss_dssp EEEEEESS-SSTTSHHHHHHHHHHHHHHH-TTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEE
T ss_pred EEEEEECc-CCCCCHHHHHHHHHHHHHHH-cCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEE
Confidence 45666532 45557777788877776544 4889999988764 2 234478888999776
No 20
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=45.28 E-value=80 Score=33.02 Aligned_cols=70 Identities=10% Similarity=0.205 Sum_probs=48.4
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++. .=+...|.+ .|..|.+....+-.+. +...+|||+|+.=| +++...=|.+||++||
T Consensus 233 ~vvVIGRS~---iVG-kPLa~LL~~-----~~ATVTicHs~T~nl~---~~~r~ADIVIsAvGkp~~i~~d~vK~GAvVI 300 (364)
T PLN02616 233 RAVVIGRSN---IVG-MPAALLLQR-----EDATVSIVHSRTKNPE---EITREADIIISAVGQPNMVRGSWIKPGAVVI 300 (364)
T ss_pred EEEEECCCc---ccc-HHHHHHHHH-----CCCeEEEeCCCCCCHH---HHHhhCCEEEEcCCCcCcCCHHHcCCCCEEE
Confidence 568999874 121 124445554 3667887776655443 45789999998877 6677777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 301 DVG 303 (364)
T PLN02616 301 DVG 303 (364)
T ss_pred ecc
Confidence 873
No 21
>PF00148 Oxidored_nitro: Nitrogenase component 1 type Oxidoreductase; InterPro: IPR000510 Enzymes belonging to this family include cofactor-requiring nitrogenases and protochlorophyllide reductase. The key enzymatic reactions in nitrogen fixation are catalysed by the nitrogenase complex, which has two components, the iron protein (component 2), and a component (component 1) which is either a molybdenum-iron, vanadium-iron or iron-iron protein. The enzyme (1.18.6.1 from EC) forms a hexamer of two alpha, two beta and two delta chains. Protochlorophyllide reductase (1.3.1.33 from EC) is involved in the light-dependent accumulation of chlorophyll, probably at the step of reduction of protochlorophyllide to chlorophyllide.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QH1_C 1QH8_A 1H1L_C 1QGU_A 3AEK_C 3AET_C 3AER_C 3AEU_A 3AES_C 3AEQ_C ....
Probab=45.15 E-value=35 Score=35.04 Aligned_cols=95 Identities=6% Similarity=0.012 Sum_probs=68.4
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhh-hhcccCC--CcE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLT-NMLFMDR--NSS 323 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLT-N~lFm~p--gs~ 323 (423)
.|-||.....- .-|.+|+.+.|++ .|+++..+.....|+ |+++-+.+|++-|.++..+.. =.=+|.. |.-
T Consensus 146 ~VNiiG~~~~~-~~d~~el~~lL~~-----~Gi~v~~~~~~~~t~-~e~~~~~~A~lniv~~~~~~~~~a~~L~e~~giP 218 (398)
T PF00148_consen 146 SVNIIGGSPLG-PGDLEELKRLLEE-----LGIEVNAVFPGGTTL-EEIRKAPEAALNIVLCPEGGPYAAEWLEERFGIP 218 (398)
T ss_dssp EEEEEEESTBT-HHHHHHHHHHHHH-----TTEEEEEEEETTBCH-HHHHHGGGSSEEEESSCCHHHHHHHHHHHHHT-E
T ss_pred ceEEecCcCCC-cccHHHHHHHHHH-----CCCceEEEeCCCCCH-HHHHhCCcCcEEEEeccchhhHHHHHHHHHhCCC
Confidence 34666654211 2688899999987 698888888777787 778889999999999988665 4555554 777
Q ss_pred EEE-EeeCCcccccccchhHHHHHHhhcCC
Q 014542 324 VME-FFPKGWLELAGVGQYAHHWMADQSGM 352 (423)
Q Consensus 324 viE-i~P~g~~~~~g~~~~~Y~~lA~~~Gl 352 (423)
.+. -.|.|.-.. ..+|+.+++.+|.
T Consensus 219 ~~~~~~p~G~~~t----~~~l~~i~~~lg~ 244 (398)
T PF00148_consen 219 YLYFPSPYGIEGT----DAWLRAIAEALGK 244 (398)
T ss_dssp EEEEC-SBSHHHH----HHHHHHHHHHHTH
T ss_pred eeeccccccHHHH----HHHHHHHHHHhCC
Confidence 777 668876543 3578889999983
No 22
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.58 E-value=1.4e+02 Score=30.05 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=47.6
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+..+|.+ .|..|.+....+-.+. +.+++|||+|+.=| +++-..=|.+||++||
T Consensus 159 ~vvViGrS~---iV-GkPla~lL~~-----~~AtVtichs~T~nl~---~~~~~ADIvI~AvGk~~~i~~~~ik~gaiVI 226 (282)
T PRK14182 159 RALVVGRSN---IV-GKPMAMMLLE-----RHATVTIAHSRTADLA---GEVGRADILVAAIGKAELVKGAWVKEGAVVI 226 (282)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 568999874 11 1224555554 3667777766554443 56789999998877 5666666889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 227 DvG 229 (282)
T PRK14182 227 DVG 229 (282)
T ss_pred Eee
Confidence 873
No 23
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.49 E-value=1.4e+02 Score=30.40 Aligned_cols=70 Identities=9% Similarity=0.204 Sum_probs=47.2
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+ -+..++|||+|+.=| +++-..=|.+||++||
T Consensus 160 ~vvVIGrS~---iV-GkPla~lL~~-----~~atVtv~hs~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (297)
T PRK14186 160 KAVVVGRSI---LV-GKPLALMLLA-----ANATVTIAHSRTQDL---ASITREADILVAAAGRPNLIGAEMVKPGAVVV 227 (297)
T ss_pred EEEEECCCc---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 458999874 12 1224455554 467787776655444 346789999999877 4555555889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 228 DvG 230 (297)
T PRK14186 228 DVG 230 (297)
T ss_pred Eec
Confidence 873
No 24
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=44.41 E-value=48 Score=33.45 Aligned_cols=70 Identities=11% Similarity=0.166 Sum_probs=45.7
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechh-hhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGA-QLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGA-gLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++. .-+...|.+ .|..|.+....+- +-.+.+.+|||+|+.=|. ++-.-=|.+||++||
T Consensus 159 ~vvVvGrs~---~VG-~Pla~lL~~-----~gAtVtv~hs~t~---~l~~~~~~ADIvV~AvG~p~~i~~~~vk~GavVI 226 (285)
T PRK14191 159 DVVIIGASN---IVG-KPLAMLMLN-----AGASVSVCHILTK---DLSFYTQNADIVCVGVGKPDLIKASMVKKGAVVV 226 (285)
T ss_pred EEEEECCCc---hhH-HHHHHHHHH-----CCCEEEEEeCCcH---HHHHHHHhCCEEEEecCCCCcCCHHHcCCCcEEE
Confidence 568998863 111 123444544 4778877754432 234678999999998774 555555669999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+-
T Consensus 227 DvG 229 (285)
T PRK14191 227 DIG 229 (285)
T ss_pred Eee
Confidence 985
No 25
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=44.27 E-value=69 Score=32.37 Aligned_cols=67 Identities=12% Similarity=0.259 Sum_probs=49.5
Q ss_pred EEEEEEecC--CCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcE
Q 014542 247 RLTLLMRRG--SRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSS 323 (423)
Q Consensus 247 rv~li~R~~--~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~ 323 (423)
++++|.|.+ .|- +...|.. .++.|.+-...+ ++-.+..++|||+|..=| +++-..=|..||++
T Consensus 158 ~~vVVGrS~iVGkP------la~lL~~-----~naTVtvcHs~T---~~l~~~~k~ADIvv~AvG~p~~i~~d~vk~gav 223 (283)
T COG0190 158 NVVVVGRSNIVGKP------LALLLLN-----ANATVTVCHSRT---KDLASITKNADIVVVAVGKPHFIKADMVKPGAV 223 (283)
T ss_pred EEEEECCCCcCcHH------HHHHHHh-----CCCEEEEEcCCC---CCHHHHhhhCCEEEEecCCccccccccccCCCE
Confidence 568999873 342 3444544 477888776655 345678889999999888 57788888999999
Q ss_pred EEEE
Q 014542 324 VMEF 327 (423)
Q Consensus 324 viEi 327 (423)
||-+
T Consensus 224 VIDV 227 (283)
T COG0190 224 VIDV 227 (283)
T ss_pred EEec
Confidence 9987
No 26
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.30 E-value=1e+02 Score=31.15 Aligned_cols=70 Identities=13% Similarity=0.297 Sum_probs=47.8
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+ -+.+++|||+|+.=| +++-.-=|..||++||
T Consensus 159 ~vvVvGrS~---iV-GkPla~lL~~-----~~atVtichs~T~~l---~~~~~~ADIvI~AvG~~~~i~~~~vk~GavVI 226 (284)
T PRK14170 159 RAVVIGRSN---IV-GKPVAQLLLN-----ENATVTIAHSRTKDL---PQVAKEADILVVATGLAKFVKKDYIKPGAIVI 226 (284)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 568999874 11 1124445554 366777776655433 356789999999887 5677777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 227 DvG 229 (284)
T PRK14170 227 DVG 229 (284)
T ss_pred Ecc
Confidence 873
No 27
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=43.13 E-value=1.5e+02 Score=29.78 Aligned_cols=69 Identities=10% Similarity=0.297 Sum_probs=46.9
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+ -+...+|||+|+.=| +++-.-=|.+||++||
T Consensus 160 ~vvViGrS~---~V-GkPla~lL~~-----~~AtVt~chs~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gavVI 227 (278)
T PRK14172 160 EVVVIGRSN---IV-GKPVAQLLLN-----ENATVTICHSKTKNL---KEVCKKADILVVAIGRPKFIDEEYVKEGAIVI 227 (278)
T ss_pred EEEEECCCc---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEcCCCcCccCHHHcCCCcEEE
Confidence 558998864 11 1224455554 467777776655443 345678999998877 5666666789999999
Q ss_pred EE
Q 014542 326 EF 327 (423)
Q Consensus 326 Ei 327 (423)
-+
T Consensus 228 Dv 229 (278)
T PRK14172 228 DV 229 (278)
T ss_pred Ee
Confidence 97
No 28
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=42.51 E-value=1.5e+02 Score=29.85 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=47.4
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
+++++.|.. ++ -.=+...|.+ .|..|.+....+-. .-+...+|||+|+.=| +++-.-=|.+||++||
T Consensus 159 ~vvVvGrS~---iV-GkPla~lL~~-----~~atVt~chs~T~n---l~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVI 226 (282)
T PRK14166 159 DAVIIGASN---IV-GRPMATMLLN-----AGATVSVCHIKTKD---LSLYTRQADLIIVAAGCVNLLRSDMVKEGVIVV 226 (282)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEeCCCCCC---HHHHHhhCCEEEEcCCCcCccCHHHcCCCCEEE
Confidence 558999874 11 1224445554 36677777655433 3347789999998877 5677777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 227 DvG 229 (282)
T PRK14166 227 DVG 229 (282)
T ss_pred Eec
Confidence 873
No 29
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=41.24 E-value=1.7e+02 Score=29.59 Aligned_cols=70 Identities=7% Similarity=0.081 Sum_probs=47.5
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-. ..+.+++|||+|+.=| +++-..=|.+||++||
T Consensus 160 ~vvViGrS~---~V-GkPla~lL~~-----~~ATVt~chs~T~d---l~~~~k~ADIvIsAvGkp~~i~~~~vk~gavVI 227 (282)
T PRK14180 160 YAVVVGASN---VV-GKPVSQLLLN-----AKATVTTCHRFTTD---LKSHTTKADILIVAVGKPNFITADMVKEGAVVI 227 (282)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEEcCCCCC---HHHHhhhcCEEEEccCCcCcCCHHHcCCCcEEE
Confidence 558999874 11 1224455554 36677777654433 3446899999999877 5677777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 228 DvG 230 (282)
T PRK14180 228 DVG 230 (282)
T ss_pred Eec
Confidence 873
No 30
>CHL00076 chlB photochlorophyllide reductase subunit B
Probab=39.62 E-value=1.5e+02 Score=32.31 Aligned_cols=98 Identities=10% Similarity=0.152 Sum_probs=67.9
Q ss_pred CCeeEEEEEEec--CCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEee-chhhhhhhcccC
Q 014542 243 QPIIRLTLLMRR--GSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASP-HGAQLTNMLFMD 319 (423)
Q Consensus 243 ~p~irv~li~R~--~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgv-HGAgLTN~lFm~ 319 (423)
++.++ ||.-. +.+.--|..||...|+. .|+++..+...+.++ ++++-+.+|++=|.+ +-.|+.-.=+|.
T Consensus 163 ~~~VN--IIG~~~l~f~~~~Dl~eikrLL~~-----~Gi~vn~v~~~g~sl-~di~~~~~A~~NIvl~~~~g~~~A~~Le 234 (513)
T CHL00076 163 KPSVN--IIGIFTLGFHNQHDCRELKRLLQD-----LGIEINQIIPEGGSV-EDLKNLPKAWFNIVPYREVGLMTAKYLE 234 (513)
T ss_pred CCcEE--EEecCCCCCCCcchHHHHHHHHHH-----CCCeEEEEECCCCCH-HHHHhcccCcEEEEechhhhHHHHHHHH
Confidence 34454 44433 55666788999999997 699999888777776 778888999887777 335655555665
Q ss_pred C--CcEEEEEeeCCcccccccchhHHHHHHhhcCC
Q 014542 320 R--NSSVMEFFPKGWLELAGVGQYAHHWMADQSGM 352 (423)
Q Consensus 320 p--gs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl 352 (423)
. |.-.+...|.|.... ..+-+.+|+.+|.
T Consensus 235 ~~fgiP~i~~~PiGi~~T----~~fLr~la~~lg~ 265 (513)
T CHL00076 235 KEFGMPYISTTPMGIVDT----AECIRQIQKILNK 265 (513)
T ss_pred HHhCCCeEeeccCCHHHH----HHHHHHHHHHhCC
Confidence 4 555677789887543 2355667777775
No 31
>cd02696 MurNAc-LAA N-acetylmuramoyl-L-alanine amidase or MurNAc-LAA (also known as peptidoglycan aminohydrolase, NAMLA amidase, NAMLAA, Amidase 3, and peptidoglycan amidase; EC 3.5.1.28) is an autolysin that hydrolyzes the amide bond between N-acetylmuramoyl and L-amino acids in certain cell wall glycopeptides. These proteins are Zn-dependent peptidases with highly conserved residues involved in cation co-ordination. MurNAc-LAA in this family is one of several peptidoglycan hydrolases (PGHs) found in bacterial and bacteriophage or prophage genomes that are involved in the degradation of the peptidoglycan. In Escherichia coli, there are five MurNAc-LAAs present: AmiA, AmiB, AmiC and AmiD that are periplasmic, and AmpD that is cytoplasmic. Three of these (AmiA, AmiB and AmiC) belong to this family, the other two (AmiD and AmpD) do not. E. coli AmiA, AmiB and AmiC play an important role in cleaving the septum to release daughter cells after cell division. In general, bacterial MurNAc-LAAs
Probab=39.35 E-value=76 Score=28.44 Aligned_cols=38 Identities=18% Similarity=0.326 Sum_probs=30.3
Q ss_pred CCcEEEEEeCC--CCCHHHHHHHhcC--CcEEEeechhhhhh
Q 014542 277 DGCVLKVEQSE--DLSFCDQVKVMTG--TDVVASPHGAQLTN 314 (423)
Q Consensus 277 ~G~~v~vv~~~--~ls~~eQv~l~~~--adVlIgvHGAgLTN 314 (423)
.|++|.....+ ..++.+.+...+. +|++|+.|-.+-.+
T Consensus 41 ~G~~v~~~r~~~~~~~l~~r~~~an~~~~d~~islH~na~~~ 82 (172)
T cd02696 41 AGAKVVLTRDDDTFVSLSERVAIANRAGADLFISIHANAAPN 82 (172)
T ss_pred CCCEEEEEecCCCCCCHHHHHHHHHhcCCCEEEEEeecCCCC
Confidence 48887776443 4789899988886 99999999887776
No 32
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=39.28 E-value=1.8e+02 Score=29.61 Aligned_cols=69 Identities=9% Similarity=0.289 Sum_probs=47.5
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+ -+.+++|||+|+.=| +++-..=|..||++||
T Consensus 162 ~vvViGrS~---iV-GkPla~lL~~-----~~aTVt~chs~T~~l---~~~~~~ADIvVsAvGkp~~i~~~~ik~gaiVI 229 (294)
T PRK14187 162 DAVVIGRSN---IV-GKPMACLLLG-----ENCTVTTVHSATRDL---ADYCSKADILVAAVGIPNFVKYSWIKKGAIVI 229 (294)
T ss_pred EEEEECCCc---cc-hHHHHHHHhh-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 558999874 12 1224455554 367787776655444 346889999999877 5566666788999999
Q ss_pred EE
Q 014542 326 EF 327 (423)
Q Consensus 326 Ei 327 (423)
-+
T Consensus 230 DV 231 (294)
T PRK14187 230 DV 231 (294)
T ss_pred Ee
Confidence 87
No 33
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=38.76 E-value=1.8e+02 Score=29.37 Aligned_cols=70 Identities=11% Similarity=0.303 Sum_probs=47.2
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++ -.=+...|.+ .|..|.+....+-.+ .+...+|||+|+.=| +++-..=|.+||++||
T Consensus 161 ~vvViGrS~---iV-GkPla~lL~~-----~~ATVtichs~T~~L---~~~~~~ADIvV~AvGkp~~i~~~~vk~GavVI 228 (288)
T PRK14171 161 NVVIIGRSN---IV-GKPLSALLLK-----ENCSVTICHSKTHNL---SSITSKADIVVAAIGSPLKLTAEYFNPESIVI 228 (288)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEccCCCCccCHHHcCCCCEEE
Confidence 458998864 11 1224455554 366777776655443 346778999999877 4566666889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 229 DvG 231 (288)
T PRK14171 229 DVG 231 (288)
T ss_pred Eee
Confidence 874
No 34
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.97 E-value=2.1e+02 Score=28.84 Aligned_cols=70 Identities=7% Similarity=0.191 Sum_probs=47.8
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++ -.=+...|.+ .|..|.+....+-.+. +...+|||+|+.=| +++-..=|.+||++||
T Consensus 161 ~vvViGrS~---iV-GkPla~lL~~-----~~atVt~chs~T~~l~---~~~~~ADIvIsAvGk~~~i~~~~ik~gavVI 228 (284)
T PRK14177 161 NAVVVGRSP---IL-GKPMAMLLTE-----MNATVTLCHSKTQNLP---SIVRQADIIVGAVGKPEFIKADWISEGAVLL 228 (284)
T ss_pred EEEEECCCC---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCHH---HHHhhCCEEEEeCCCcCccCHHHcCCCCEEE
Confidence 558998864 11 2224455554 4677877766554433 56789999998776 5666677889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 229 DvG 231 (284)
T PRK14177 229 DAG 231 (284)
T ss_pred Eec
Confidence 873
No 35
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.32 E-value=97 Score=31.52 Aligned_cols=70 Identities=13% Similarity=0.257 Sum_probs=48.3
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
+|++|.|.+ ++ -.-+...|.+ .|+.|.+....+-++. +..++|||+|.+=| +++....|++||++||
T Consensus 161 ~V~vIG~s~---iv-G~PmA~~L~~-----~gatVtv~~~~t~~l~---e~~~~ADIVIsavg~~~~v~~~~ik~GaiVI 228 (301)
T PRK14194 161 HAVVIGRSN---IV-GKPMAALLLQ-----AHCSVTVVHSRSTDAK---ALCRQADIVVAAVGRPRLIDADWLKPGAVVI 228 (301)
T ss_pred EEEEECCCC---cc-HHHHHHHHHH-----CCCEEEEECCCCCCHH---HHHhcCCEEEEecCChhcccHhhccCCcEEE
Confidence 558998863 11 1224455554 4888888865554544 45678999998776 5677778899999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+-
T Consensus 229 Dvg 231 (301)
T PRK14194 229 DVG 231 (301)
T ss_pred Eec
Confidence 974
No 36
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=35.71 E-value=2.1e+02 Score=29.01 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=46.6
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++ -.=+...|.+ .|..|.+....+-.+ -....+|||+|+.=| +++-.-=|.+||++||
T Consensus 157 ~vvViGrS~---iV-GkPla~lL~~-----~~aTVtichs~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~vk~GavVI 224 (287)
T PRK14173 157 EVVVVGRSN---IV-GKPLAALLLR-----EDATVTLAHSKTQDL---PAVTRRADVLVVAVGRPHLITPEMVRPGAVVV 224 (287)
T ss_pred EEEEECCCC---cc-HHHHHHHHHH-----CCCEEEEeCCCCCCH---HHHHhhCCEEEEecCCcCccCHHHcCCCCEEE
Confidence 558999874 11 1124445544 366777776655444 356788999999877 4555666779999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 225 DVG 227 (287)
T PRK14173 225 DVG 227 (287)
T ss_pred Ecc
Confidence 873
No 37
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=35.63 E-value=89 Score=28.81 Aligned_cols=71 Identities=10% Similarity=0.092 Sum_probs=44.8
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhh-hhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQL-TNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgL-TN~lFm~pgs~vi 325 (423)
+++++.+... . ..-+.+.|.+ .|+++.+..- +..+..+.+++|||+|+.-|+.- -..=.++++.++|
T Consensus 46 ~vlViG~G~~---~-G~~~a~~L~~-----~g~~V~v~~r---~~~~l~~~l~~aDiVIsat~~~~ii~~~~~~~~~viI 113 (168)
T cd01080 46 KVVVVGRSNI---V-GKPLAALLLN-----RNATVTVCHS---KTKNLKEHTKQADIVIVAVGKPGLVKGDMVKPGAVVI 113 (168)
T ss_pred EEEEECCcHH---H-HHHHHHHHhh-----CCCEEEEEEC---CchhHHHHHhhCCEEEEcCCCCceecHHHccCCeEEE
Confidence 5578876421 0 1225556665 4766655542 23566789999999999999952 2222347788888
Q ss_pred EEee
Q 014542 326 EFFP 329 (423)
Q Consensus 326 Ei~P 329 (423)
.+--
T Consensus 114 Dla~ 117 (168)
T cd01080 114 DVGI 117 (168)
T ss_pred EccC
Confidence 8863
No 38
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=35.44 E-value=71 Score=33.35 Aligned_cols=64 Identities=20% Similarity=0.265 Sum_probs=48.4
Q ss_pred eeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhh
Q 014542 245 IIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLT 313 (423)
Q Consensus 245 ~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLT 313 (423)
..||+=.+|.| ++++++++++++. +++.|+.+.|..-|--.+.-.-++++.-.|++.+|=++.|
T Consensus 229 GVriIN~aRGG---vVDe~ALv~Al~s--G~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT 292 (406)
T KOG0068|consen 229 GVRIINVARGG---VVDEPALVRALDS--GQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGAST 292 (406)
T ss_pred CcEEEEecCCc---eechHHHHHHHhc--CcccceeeecccCCCCccchhHHHhcCCceeecCccccch
Confidence 44667777765 8999999999987 5567888887755544443456788899999999977655
No 39
>PF01520 Amidase_3: N-acetylmuramoyl-L-alanine amidase; InterPro: IPR002508 The cell wall envelope of Gram-positive bacteria is a macromolecular, exoskeletal organelle that is assembled and turned over at designated sites. The cell wall also functions as a surface organelle that allows Gram-positive pathogens to interact with their environment, in particular the tissues of the infected host. All of these functions require that surface proteins and enzymes be properly targeted to the cell wall envelope. Two basic mechanisms, cell wall sorting and targeting, have been identified. Cell well sorting is the covalent attachment of surface proteins to the peptidoglycan via a C-terminal sorting signal that contains a consensus LPXTG sequence. More than 100 proteins that possess cell wall-sorting signals, including the M proteins of Streptococcus pyogenes, protein A of Staphylococcus aureus, and several internalins of Listeria monocytogenes, have been identified. Cell wall targeting involves the noncovalent attachment of proteins to the cell surface via specialised binding domains. Several of these wall-binding domains appear to interact with secondary wall polymers that are associated with the peptidoglycan, for example teichoic acids and polysaccharides. Proteins that are targeted to the cell surface include muralytic enzymes such as autolysins, lysostaphin, and phage lytic enzymes. Other examples for targeted proteins are the surface S-layer proteins of bacilli and clostridia, as well as virulence factors required for the pathogenesis of L. monocytogenes (internalin B) and Streptococcus pneumoniae (PspA) infections []. Autolysin 3.5.1.28 from EC hydrolyses the link between N-acetylmuramoyl residues and L-amino acid residues in certain bacterial cell wall glycopeptides.; GO: 0008745 N-acetylmuramoyl-L-alanine amidase activity, 0009253 peptidoglycan catabolic process; PDB: 3QAY_A 3CZX_A 1JWQ_A 1XOV_A 3NE8_A.
Probab=34.85 E-value=69 Score=28.72 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=27.2
Q ss_pred CCcEEEEEeC--CCCCHHHHHHHh--cCCcEEEeechhhhh
Q 014542 277 DGCVLKVEQS--EDLSFCDQVKVM--TGTDVVASPHGAQLT 313 (423)
Q Consensus 277 ~G~~v~vv~~--~~ls~~eQv~l~--~~adVlIgvHGAgLT 313 (423)
.|++|..... ..+++.+-++.. .++|++|+.|-.+..
T Consensus 40 ~g~~V~~tr~~d~~~~l~~R~~~an~~~ad~~isiH~na~~ 80 (175)
T PF01520_consen 40 HGIKVYLTRDNDSDVSLQERAALANSWGADLFISIHFNASN 80 (175)
T ss_dssp TTEEEEESSSSSHCCCHHHHHHHHHHTTSSEEEEEEEE-SS
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHhcccCEEEEEeecCcc
Confidence 5766655533 347899988888 899999999976653
No 40
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.66 E-value=2.6e+02 Score=28.33 Aligned_cols=74 Identities=5% Similarity=0.219 Sum_probs=46.3
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+..+|.++-+. .+..|.+....+-.+ -+.+++|||+|+.=| +++..-=|.+||++||
T Consensus 155 ~vvViGrS~---iV-GkPla~lL~~~~~~-~~AtVtvchs~T~~l---~~~~~~ADIvV~AvG~p~~i~~~~ik~GavVI 226 (287)
T PRK14181 155 HVAIVGRSN---IV-GKPLAALLMQKHPD-TNATVTLLHSQSENL---TEILKTADIIIAAIGVPLFIKEEMIAEKAVIV 226 (287)
T ss_pred EEEEECCCc---cc-hHHHHHHHHhCcCC-CCCEEEEeCCCCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 568999874 11 11244455442000 155676665544333 345789999998777 5666777889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 227 DvG 229 (287)
T PRK14181 227 DVG 229 (287)
T ss_pred Eec
Confidence 873
No 41
>PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A ....
Probab=33.66 E-value=1.7e+02 Score=25.87 Aligned_cols=70 Identities=13% Similarity=0.242 Sum_probs=42.6
Q ss_pred CcccCHHHHHHHHHhhccccCCcEEEEEeCC--CCCHHHH-------------HHHhcCCcEEEeechhhhhhhcccCCC
Q 014542 257 RSFKNATAVTEIFAEECAMVDGCVLKVEQSE--DLSFCDQ-------------VKVMTGTDVVASPHGAQLTNMLFMDRN 321 (423)
Q Consensus 257 R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~--~ls~~eQ-------------v~l~~~adVlIgvHGAgLTN~lFm~pg 321 (423)
||+.=..+.++.|.+ .|++|.+-... ...|.++ -+++.+||||+++..-...-+-.|++|
T Consensus 11 ~RVal~P~~v~~L~~-----~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~p~~~e~~~l~~g 85 (136)
T PF05222_consen 11 RRVALTPEDVKKLVK-----LGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKPPSEEELALLKPG 85 (136)
T ss_dssp --BSS-HHHHHHHHH-----TTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS---GGGGGGS-TT
T ss_pred cEecccHHHHHHHHh-----CCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECCCCHHHHhhcCCC
Confidence 333334555666655 48887776432 3334332 268899999999999999999999999
Q ss_pred cEEEEEeeCC
Q 014542 322 SSVMEFFPKG 331 (423)
Q Consensus 322 s~viEi~P~g 331 (423)
.++|=++.+.
T Consensus 86 ~~li~~~~~~ 95 (136)
T PF05222_consen 86 QTLIGFLHPA 95 (136)
T ss_dssp CEEEEE--GG
T ss_pred cEEEEeeccc
Confidence 9999887554
No 42
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.15 E-value=2.3e+02 Score=28.74 Aligned_cols=74 Identities=11% Similarity=0.217 Sum_probs=47.2
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++ -.=+..+|.+++.. .+..|.+....+-++ -+.+++|||+|+.=| +++-..=|.+||++||
T Consensus 159 ~vvViGrS~---iV-GkPla~lL~~~~~~-~~aTVtvchs~T~~l---~~~~~~ADIvIsAvGkp~~i~~~~ik~gaiVI 230 (297)
T PRK14167 159 DVVVVGRSD---IV-GKPMANLLIQKADG-GNATVTVCHSRTDDL---AAKTRRADIVVAAAGVPELIDGSMLSEGATVI 230 (297)
T ss_pred EEEEECCCc---cc-HHHHHHHHhcCccC-CCCEEEEeCCCCCCH---HHHHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 568999874 11 11244455432100 145677665544433 357889999999766 6777778889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 231 DvG 233 (297)
T PRK14167 231 DVG 233 (297)
T ss_pred Ecc
Confidence 874
No 43
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=33.08 E-value=97 Score=31.27 Aligned_cols=70 Identities=13% Similarity=0.236 Sum_probs=48.0
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++ -.-+...|.+ .|+.|.+....+- +--+.+.+|||+|+.=|.. +..-=+.+||++||
T Consensus 160 ~vvVIGrs~---~V-G~pla~lL~~-----~gatVtv~~s~t~---~l~~~~~~ADIVIsAvg~p~~i~~~~vk~gavVI 227 (286)
T PRK14175 160 NAVVIGRSH---IV-GQPVSKLLLQ-----KNASVTILHSRSK---DMASYLKDADVIVSAVGKPGLVTKDVVKEGAVII 227 (286)
T ss_pred EEEEECCCc---hh-HHHHHHHHHH-----CCCeEEEEeCCch---hHHHHHhhCCEEEECCCCCcccCHHHcCCCcEEE
Confidence 558888753 12 1235555554 4777887765432 3346789999999998887 54455679999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+-
T Consensus 228 DvG 230 (286)
T PRK14175 228 DVG 230 (286)
T ss_pred EcC
Confidence 985
No 44
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.95 E-value=81 Score=31.96 Aligned_cols=72 Identities=8% Similarity=0.206 Sum_probs=44.2
Q ss_pred EEEEEEecC--CCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcE
Q 014542 247 RLTLLMRRG--SRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSS 323 (423)
Q Consensus 247 rv~li~R~~--~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~ 323 (423)
++++|.|.. .|- +..+|.+.+.. .|..|.+....+..+ .+.+.+|||+|+.=|.. +-.-=|.+||++
T Consensus 161 ~vvViGrS~iVG~P------la~lL~~~~~~-~~atVt~~hs~t~~l---~~~~~~ADIvI~Avg~~~li~~~~vk~Gav 230 (295)
T PRK14174 161 HCVVVGRSNIVGKP------MANLMLQKLKE-SNCTVTICHSATKDI---PSYTRQADILIAAIGKARFITADMVKPGAV 230 (295)
T ss_pred EEEEECCCCcchHH------HHHHHHhcccc-CCCEEEEEeCCchhH---HHHHHhCCEEEEecCccCccCHHHcCCCCE
Confidence 568999874 332 23333321110 356777776665444 44578999999988654 222234589999
Q ss_pred EEEEe
Q 014542 324 VMEFF 328 (423)
Q Consensus 324 viEi~ 328 (423)
||-+-
T Consensus 231 VIDVg 235 (295)
T PRK14174 231 VIDVG 235 (295)
T ss_pred EEEee
Confidence 99874
No 45
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=31.79 E-value=1.2e+02 Score=30.58 Aligned_cols=70 Identities=10% Similarity=0.265 Sum_probs=47.1
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.+ ++. .-+...|.+ .|+.|.+.....-++ .+.+++|||+|++=| +++..-.|++||++||
T Consensus 160 ~v~vIG~S~---ivG-~Pla~lL~~-----~gatVtv~~s~t~~l---~~~~~~ADIVI~avg~~~~v~~~~ik~GavVI 227 (284)
T PRK14179 160 HAVVIGRSN---IVG-KPMAQLLLD-----KNATVTLTHSRTRNL---AEVARKADILVVAIGRGHFVTKEFVKEGAVVI 227 (284)
T ss_pred EEEEECCCC---cCc-HHHHHHHHH-----CCCEEEEECCCCCCH---HHHHhhCCEEEEecCccccCCHHHccCCcEEE
Confidence 558998853 111 124445554 477887764433333 346789999998877 5677778899999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+=
T Consensus 228 Dvg 230 (284)
T PRK14179 228 DVG 230 (284)
T ss_pred Eec
Confidence 973
No 46
>TIGR01862 N2-ase-Ialpha nitrogenase component I, alpha chain. This model represents the alpha chain of all three varieties (Mo-Fe, V-Fe, and Fe-Fe) of component I of nitrogenase.
Probab=29.15 E-value=1.5e+02 Score=31.44 Aligned_cols=85 Identities=14% Similarity=0.068 Sum_probs=57.9
Q ss_pred ccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechh-h--hhhhcccCCCcEEEEEeeCCcccc
Q 014542 259 FKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGA-Q--LTNMLFMDRNSSVMEFFPKGWLEL 335 (423)
Q Consensus 259 i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGA-g--LTN~lFm~pgs~viEi~P~g~~~~ 335 (423)
.-|.+|+.+.|++ .|+++..+.....++ |+++-+.+|..-|.+.+. + ++..|==+=|.-.+.+-|.|....
T Consensus 203 ~~d~~el~~lL~~-----~Gl~v~~~~~~~~t~-eei~~~~~A~lniv~~~~~~~~~A~~L~er~GiP~~~~~p~G~~~t 276 (443)
T TIGR01862 203 GGDAWVMRIYLEE-----MGIQVVATFTGDGTY-DEIRLMHKAKLNLVHCARSANYIANELEERYGIPWMKIDFFGFTYT 276 (443)
T ss_pred cccHHHHHHHHHH-----cCCeEEEEECCCCCH-HHHHhcccCCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHH
Confidence 4577899999997 688887777776666 778888898877765542 2 344332233666777767665433
Q ss_pred cccchhHHHHHHhhcCCe
Q 014542 336 AGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl~ 353 (423)
..+++.+++..|+.
T Consensus 277 ----~~~l~~la~~~gi~ 290 (443)
T TIGR01862 277 ----AESLRAIAAFFGIE 290 (443)
T ss_pred ----HHHHHHHHHHhCCc
Confidence 24788888888864
No 47
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=29.00 E-value=70 Score=32.64 Aligned_cols=56 Identities=13% Similarity=0.242 Sum_probs=38.6
Q ss_pred cccCHHHHHHHHHhhccccCCcEEEEEeCCCCCH-----------HHHHHHhcCCcEEEeechhhhhhh
Q 014542 258 SFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSF-----------CDQVKVMTGTDVVASPHGAQLTNM 315 (423)
Q Consensus 258 ~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~-----------~eQv~l~~~adVlIgvHGAgLTN~ 315 (423)
.++|+++|+++|++. +..|+-+.|.+.|...+ ..--.+...-.|+++||=||.|--
T Consensus 237 ~~vd~~aL~~aL~~g--~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~ 303 (330)
T PRK12480 237 AVINTPDLIAAVNDG--TLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDE 303 (330)
T ss_pred cccCHHHHHHHHHcC--CeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHH
Confidence 588999999999972 33455566665554311 111356777899999999988753
No 48
>PRK06436 glycerate dehydrogenase; Provisional
Probab=27.76 E-value=46 Score=33.65 Aligned_cols=49 Identities=12% Similarity=0.134 Sum_probs=30.8
Q ss_pred cccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec-hhhhh
Q 014542 258 SFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH-GAQLT 313 (423)
Q Consensus 258 ~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH-GAgLT 313 (423)
.++|+++++++|++. ...|+-..|.+.|-++-.. ..-.|+++|| +++.|
T Consensus 212 ~~vd~~aL~~aL~~g--~i~~a~lDV~~~EP~~~~~-----~~~nviiTPHi~g~~t 261 (303)
T PRK06436 212 DVVDKNDMLNFLRNH--NDKYYLSDVWWNEPIITET-----NPDNVILSPHVAGGMS 261 (303)
T ss_pred cccCHHHHHHHHHcC--CceEEEEccCCCCCCCccC-----CCCCEEECCccccccC
Confidence 588999999999973 2234445555444332111 3457899999 66544
No 49
>TIGR01278 DPOR_BchB light-independent protochlorophyllide reductase, B subunit. This enzyme describes the B subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme. This subunit shows homology to the nitrogenase molybdenum-iron protein. It catalyzes a step in bacteriochlorophyll biosynthesis.
Probab=27.53 E-value=1.8e+02 Score=31.48 Aligned_cols=101 Identities=12% Similarity=0.068 Sum_probs=64.4
Q ss_pred CCeeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhccc--C
Q 014542 243 QPIIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFM--D 319 (423)
Q Consensus 243 ~p~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm--~ 319 (423)
++.++|+=..--+.+.--|..|+.+.|+. .|+++.++.....++ ++++-+.+|++=|.+.+ .|+.-.-+| .
T Consensus 158 ~~~VNIiG~~~l~~~~~~D~~elkrlL~~-----lGi~vn~v~p~g~s~-~dl~~l~~A~~NIv~~~~~g~~~A~~Le~~ 231 (511)
T TIGR01278 158 KPSVNLLGPASLGFHHRHDLIELRRLLKT-----LGIEVNVVAPWGASI-ADLARLPAAWLNICPYREIGLMAAEYLKEK 231 (511)
T ss_pred CCcEEEEeCCCCCCCCHHHHHHHHHHHHH-----CCCeEEEEeCCCCCH-HHHHhcccCcEEEEechHHHHHHHHHHHHH
Confidence 44554332222355555678899999987 698998887776776 66777888888887654 554444444 2
Q ss_pred CCcEEEEEeeCCcccccccchhHHHHHHhhc---CCe
Q 014542 320 RNSSVMEFFPKGWLELAGVGQYAHHWMADQS---GMR 353 (423)
Q Consensus 320 pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~---Gl~ 353 (423)
=|.-.+...|.|.... ..+-+.+++.+ |+.
T Consensus 232 fGiP~i~~~PiG~~~T----~~fL~~l~~~~~~~g~~ 264 (511)
T TIGR01278 232 FGQPYITTTPIGVNAT----RRFIREIAALLNQAGAD 264 (511)
T ss_pred hCCCcccccccCHHHH----HHHHHHHHHHHhhcCCC
Confidence 2444455688886433 23455677766 654
No 50
>PRK10319 N-acetylmuramoyl-l-alanine amidase I; Provisional
Probab=27.50 E-value=1.1e+02 Score=30.75 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHhhccccCCcEEEEEe--CCCCCHHHHHHHhc--CCcEEEeechhhhhhhcccCCCcEEEEEee
Q 014542 267 EIFAEECAMVDGCVLKVEQ--SEDLSFCDQVKVMT--GTDVVASPHGAQLTNMLFMDRNSSVMEFFP 329 (423)
Q Consensus 267 ~~l~~~~~~~~G~~v~vv~--~~~ls~~eQv~l~~--~adVlIgvHGAgLTN~lFm~pgs~viEi~P 329 (423)
..|++.+.. .|++|...- ...+++.+-+++.+ +||++|++|-.+.++ |.+.=+|+|-
T Consensus 89 ~~l~~~L~~-~G~~V~lTR~~D~~vsL~~R~~~An~~~ADlFISIH~Ns~~~-----~~a~G~evy~ 149 (287)
T PRK10319 89 KNVRSILRN-HGIDARLTRSGDTFIPLYDRVEIAHKHGADLFMSIHADGFTN-----PKAAGASVFA 149 (287)
T ss_pred HHHHHHHHH-CCCEEEEeCCCCCCCCHHHHHHHHHhcCCCEEEEecCCCCCC-----CCCcEEEEEE
Confidence 333443333 488887663 34578888777777 799999999765432 4455566663
No 51
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=27.50 E-value=52 Score=28.80 Aligned_cols=70 Identities=21% Similarity=0.386 Sum_probs=41.8
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh--hcccCCC---
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN--MLFMDRN--- 321 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN--~lFm~pg--- 321 (423)
+|++++|+-.| -+++.+.+. +..+..+.++++. +...++||+|..-++|+.. --.+.+.
T Consensus 38 ~i~i~nRt~~r----a~~l~~~~~-------~~~~~~~~~~~~~-----~~~~~~DivI~aT~~~~~~i~~~~~~~~~~~ 101 (135)
T PF01488_consen 38 EITIVNRTPER----AEALAEEFG-------GVNIEAIPLEDLE-----EALQEADIVINATPSGMPIITEEMLKKASKK 101 (135)
T ss_dssp EEEEEESSHHH----HHHHHHHHT-------GCSEEEEEGGGHC-----HHHHTESEEEE-SSTTSTSSTHHHHTTTCHH
T ss_pred EEEEEECCHHH----HHHHHHHcC-------ccccceeeHHHHH-----HHHhhCCeEEEecCCCCcccCHHHHHHHHhh
Confidence 35889976433 444544442 2335666555433 7888999999999998652 1133333
Q ss_pred -cEEEEE-eeCCc
Q 014542 322 -SSVMEF-FPKGW 332 (423)
Q Consensus 322 -s~viEi-~P~g~ 332 (423)
..|+.+ +|...
T Consensus 102 ~~~v~Dla~Pr~i 114 (135)
T PF01488_consen 102 LRLVIDLAVPRDI 114 (135)
T ss_dssp CSEEEES-SS-SB
T ss_pred hhceeccccCCCC
Confidence 488888 66554
No 52
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=27.41 E-value=42 Score=33.99 Aligned_cols=53 Identities=21% Similarity=0.240 Sum_probs=37.2
Q ss_pred cccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh
Q 014542 258 SFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN 314 (423)
Q Consensus 258 ~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN 314 (423)
.++|+++|+++|++. +..|+-..|.+.|-++ ..-.+...-.|++++|=||.|.
T Consensus 229 ~vVde~aL~~aL~~g--~i~gaalDVf~~EPl~--~~~pl~~~~nvi~TPHiag~t~ 281 (312)
T PRK15469 229 VHVVEDDLLAALDSG--KVKGAMLDVFSREPLP--PESPLWQHPRVAITPHVAAVTR 281 (312)
T ss_pred cccCHHHHHHHHhcC--CeeeEEecCCCCCCCC--CCChhhcCCCeEECCcCCCCcC
Confidence 588999999999973 2345555555555443 2234666779999999998774
No 53
>cd01968 Nitrogenase_NifE_I Nitrogenase_NifE_I: a subgroup of the NifE subunit of the NifEN complex: NifE forms an alpha2beta2 tetramer with NifN. NifE and NifN are structurally homologous to nitrogenase MoFe protein alpha and beta subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The NifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this NifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco).
Probab=27.10 E-value=1.9e+02 Score=30.04 Aligned_cols=85 Identities=11% Similarity=0.019 Sum_probs=56.1
Q ss_pred ccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec---hhhhhhhcccCCCcEEEEEeeCCcccc
Q 014542 259 FKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH---GAQLTNMLFMDRNSSVMEFFPKGWLEL 335 (423)
Q Consensus 259 i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH---GAgLTN~lFm~pgs~viEi~P~g~~~~ 335 (423)
..|.+|+.+.|++ .|+++..+.....|+ |+++-+.+|.+-|.+. |..++..|=-+=|.-.+...|.|.-..
T Consensus 170 ~~d~~el~~lL~~-----~Gl~v~~~~~~~~s~-eei~~~~~A~lniv~~~~~~~~~a~~L~~~fGip~~~~~p~G~~~t 243 (410)
T cd01968 170 AGELWGVKPLLEK-----LGIRVLASITGDSRV-DEIRRAHRAKLNVVQCSKSMIYLARKMEEKYGIPYIEVSFYGIRDT 243 (410)
T ss_pred cccHHHHHHHHHH-----cCCeEEEEeCCCCCH-HHHHhhhhCcEEEEEchhHHHHHHHHHHHHhCCCeEecCcCcHHHH
Confidence 4577899999997 688888777777787 6666677887777543 222333332233665666667776433
Q ss_pred cccchhHHHHHHhhcCCe
Q 014542 336 AGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl~ 353 (423)
...++.+|+..|..
T Consensus 244 ----~~~l~~ia~~~g~~ 257 (410)
T cd01968 244 ----SKSLRNIAELLGDE 257 (410)
T ss_pred ----HHHHHHHHHHhCCc
Confidence 24788888888864
No 54
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=26.89 E-value=2.6e+02 Score=28.45 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=47.0
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.+ .|..|.+....+-.+. +.+.+|||+|+.=| +++-..=|..||++||
T Consensus 169 ~vvVIGRS~---iV-GkPla~lL~~-----~~ATVtvchs~T~nl~---~~~~~ADIvv~AvGk~~~i~~~~vk~gavVI 236 (299)
T PLN02516 169 KAVVVGRSN---IV-GLPVSLLLLK-----ADATVTVVHSRTPDPE---SIVREADIVIAAAGQAMMIKGDWIKPGAAVI 236 (299)
T ss_pred EEEEECCCc---cc-hHHHHHHHHH-----CCCEEEEeCCCCCCHH---HHHhhCCEEEEcCCCcCccCHHHcCCCCEEE
Confidence 568999874 12 1124445554 3677888876654443 46789999998866 4555555789999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 237 DvG 239 (299)
T PLN02516 237 DVG 239 (299)
T ss_pred Eee
Confidence 874
No 55
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=26.75 E-value=3.2e+02 Score=27.16 Aligned_cols=94 Identities=12% Similarity=0.157 Sum_probs=51.5
Q ss_pred EEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh---------hccc
Q 014542 248 LTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN---------MLFM 318 (423)
Q Consensus 248 v~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN---------~lFm 318 (423)
|++++|+.. .....+++.+.+.+.. .+..+...+.++ ..+.-+.+..+|+||-.--.|+.. .-++
T Consensus 153 V~I~~R~~~-~~~~a~~l~~~l~~~~---~~~~~~~~d~~~--~~~~~~~~~~~DilINaTp~Gm~~~~~~~~~~~~~~l 226 (289)
T PRK12548 153 ITIFNIKDD-FYERAEQTAEKIKQEV---PECIVNVYDLND--TEKLKAEIASSDILVNATLVGMKPNDGETNIKDTSVF 226 (289)
T ss_pred EEEEeCCch-HHHHHHHHHHHHhhcC---CCceeEEechhh--hhHHHhhhccCCEEEEeCCCCCCCCCCCCCCCcHHhc
Confidence 588888631 0112355666565421 222233233322 112234667889999777666633 2257
Q ss_pred CCCcEEEEEeeCCcccccccchhHHHHHHhhcCCee
Q 014542 319 DRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMRH 354 (423)
Q Consensus 319 ~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~h 354 (423)
+++..|++++-.-. + ..+-..|+..|.+.
T Consensus 227 ~~~~~v~D~vY~P~-~------T~ll~~A~~~G~~~ 255 (289)
T PRK12548 227 RKDLVVADTVYNPK-K------TKLLEDAEAAGCKT 255 (289)
T ss_pred CCCCEEEEecCCCC-C------CHHHHHHHHCCCee
Confidence 78889999972211 1 25667788888753
No 56
>cd01977 Nitrogenase_VFe_alpha Nitrogenase_VFe_alpha -like: Nitrogenase VFe protein, alpha subunit like. This group contains proteins similar to the alpha subunits of, the VFe protein of the vanadium-dependent (V-) nitrogenase and the FeFe protein of the iron only (Fe-) nitrogenase Nitrogenase catalyzes the ATP-dependent reduction of dinitrogen (N2) to ammonia. In addition to V- and Fe- nitrogenases there is a molybdenum (Mo)-dependent nitrogenase which is the most widespread and best characterized of these systems. These systems consist of component 1 (VFe protein, FeFe protein or, MoFe protein respectively) and, component 2 (Fe protein). MoFe is an alpha2beta2 tetramer, V-and Fe- nitrogenases are alpha2beta2delta2 hexamers. The alpha and beta subunits of VFe and FeFe are similar to the alpha and beta subunits of MoFe. For MoFe each alphabeta pair contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha sub
Probab=26.70 E-value=1.8e+02 Score=30.40 Aligned_cols=85 Identities=7% Similarity=0.010 Sum_probs=56.9
Q ss_pred ccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccC--CCcEEEEEeeCCcccc
Q 014542 259 FKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMD--RNSSVMEFFPKGWLEL 335 (423)
Q Consensus 259 i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~--pgs~viEi~P~g~~~~ 335 (423)
--|.+|+.+.|++ .|+++..+..+..++ |+++-+.+|..-|.+.+ .|+--.-+|. =|.-.+.+-|.|.-..
T Consensus 174 ~~d~~ei~~lL~~-----~Gl~v~~~~~~~~t~-~ei~~~~~A~lnlv~~~~~~~~~A~~L~er~GiP~~~~~~~G~~~t 247 (415)
T cd01977 174 QGDTEVLQKYFER-----MGIQVLSTFTGNGTY-DDLRWMHRAKLNVVNCARSAGYIANELKKRYGIPRLDVDGFGFEYC 247 (415)
T ss_pred cccHHHHHHHHHH-----cCCeEEEEECCCCCH-HHHHhcccCCEEEEEchhHHHHHHHHHHHHhCCCeEEeccCCHHHH
Confidence 3466788899987 588887667777777 56788888888666543 2433333443 2666666667666433
Q ss_pred cccchhHHHHHHhhcCCe
Q 014542 336 AGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl~ 353 (423)
...++.+|+.+|+.
T Consensus 248 ----~~~l~~la~~~g~~ 261 (415)
T cd01977 248 ----AESLRKIGAFFGIE 261 (415)
T ss_pred ----HHHHHHHHHHhCcc
Confidence 24788888888875
No 57
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=26.66 E-value=2e+02 Score=27.52 Aligned_cols=73 Identities=14% Similarity=0.217 Sum_probs=45.7
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeC--------------CCC---CHHH-HHHHhcCCcEEEeec
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQS--------------EDL---SFCD-QVKVMTGTDVVASPH 308 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~--------------~~l---s~~e-Qv~l~~~adVlIgvH 308 (423)
++++|.|.. ++. .=+...|.+ .|..|.+.+. ... .... -.+.+++|||+|+.=
T Consensus 64 ~vvVIGrS~---iVG-kPla~lL~~-----~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAv 134 (197)
T cd01079 64 TITIINRSE---VVG-RPLAALLAN-----DGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGV 134 (197)
T ss_pred EEEEECCCc---cch-HHHHHHHHH-----CCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCCEEEEcc
Confidence 568999873 221 224455554 3677877731 111 1112 235789999999887
Q ss_pred hh-hh-hhhcccCCCcEEEEEe
Q 014542 309 GA-QL-TNMLFMDRNSSVMEFF 328 (423)
Q Consensus 309 GA-gL-TN~lFm~pgs~viEi~ 328 (423)
|- ++ ...=|..||++||-+=
T Consensus 135 G~~~~~i~~d~ik~GavVIDVG 156 (197)
T cd01079 135 PSPNYKVPTELLKDGAICINFA 156 (197)
T ss_pred CCCCCccCHHHcCCCcEEEEcC
Confidence 74 44 5667889999999863
No 58
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=26.48 E-value=77 Score=28.98 Aligned_cols=57 Identities=19% Similarity=0.281 Sum_probs=36.1
Q ss_pred EEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechh
Q 014542 249 TLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGA 310 (423)
Q Consensus 249 ~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGA 310 (423)
++|+ .++-.++|+++++++|++. +..|+-+.|.+.|.++ +.-.+...-.|+++||=|
T Consensus 122 ~lvN-~aRG~~vde~aL~~aL~~g--~i~ga~lDV~~~EP~~--~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 122 VLVN-VARGELVDEDALLDALESG--KIAGAALDVFEPEPLP--ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp EEEE-SSSGGGB-HHHHHHHHHTT--SEEEEEESS-SSSSSS--TTHHHHTSTTEEEESS-T
T ss_pred EEEe-ccchhhhhhhHHHHHHhhc--cCceEEEECCCCCCCC--CCChHHcCCCEEEeCccC
Confidence 4444 3334699999999999973 2334445555555444 444777788999999943
No 59
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.75 E-value=2.6e+02 Score=28.38 Aligned_cols=72 Identities=7% Similarity=0.244 Sum_probs=46.9
Q ss_pred EEEEEEecC--CCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcE
Q 014542 247 RLTLLMRRG--SRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSS 323 (423)
Q Consensus 247 rv~li~R~~--~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~ 323 (423)
++++|.|.. .|- +...|.++-.. .+..|.+....+-.+. +.+.+|||+|+.=| +++-..=|.+||++
T Consensus 163 ~vvViGrS~iVGkP------la~lL~~~~~~-~~atVtv~hs~T~~l~---~~~~~ADIvVsAvGkp~~i~~~~ik~gav 232 (297)
T PRK14168 163 EVVVVGRSNIVGKP------IANMMTQKGPG-ANATVTIVHTRSKNLA---RHCQRADILIVAAGVPNLVKPEWIKPGAT 232 (297)
T ss_pred EEEEECCCCcccHH------HHHHHHhcccC-CCCEEEEecCCCcCHH---HHHhhCCEEEEecCCcCccCHHHcCCCCE
Confidence 568999874 232 44444431000 1456777665554433 46789999998665 67777788999999
Q ss_pred EEEEe
Q 014542 324 VMEFF 328 (423)
Q Consensus 324 viEi~ 328 (423)
||-+=
T Consensus 233 VIDvG 237 (297)
T PRK14168 233 VIDVG 237 (297)
T ss_pred EEecC
Confidence 99873
No 60
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=24.11 E-value=1.8e+02 Score=29.20 Aligned_cols=85 Identities=18% Similarity=0.271 Sum_probs=53.7
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhh--------ccc
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNM--------LFM 318 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~--------lFm 318 (423)
+|++++|+..| -+++.+.+.+. |..+......++.-.+ .+|++|-.-..||..- --+
T Consensus 152 ~i~V~NRt~~r----a~~La~~~~~~-----~~~~~~~~~~~~~~~~------~~dliINaTp~Gm~~~~~~~~~~~~~l 216 (283)
T COG0169 152 RITVVNRTRER----AEELADLFGEL-----GAAVEAAALADLEGLE------EADLLINATPVGMAGPEGDSPVPAELL 216 (283)
T ss_pred EEEEEeCCHHH----HHHHHHHhhhc-----cccccccccccccccc------ccCEEEECCCCCCCCCCCCCCCcHHhc
Confidence 55899987666 67777777762 2223333333332111 8999997777777663 336
Q ss_pred CCCcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542 319 DRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 319 ~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~ 353 (423)
+++++|++++=... + ..+-..|+..|.+
T Consensus 217 ~~~~~v~D~vY~P~-~------TplL~~A~~~G~~ 244 (283)
T COG0169 217 PKGAIVYDVVYNPL-E------TPLLREARAQGAK 244 (283)
T ss_pred CcCCEEEEeccCCC-C------CHHHHHHHHcCCe
Confidence 78899999983222 1 2566778888866
No 61
>TIGR02883 spore_cwlD N-acetylmuramoyl-L-alanine amidase CwlD. Members of this protein family are the CwlD family of N-acetylmuramoyl-L-alanine amidase. This family has been called the germination-specific N-acetylmuramoyl-L-alanine amidase. CwlD is required, along with the putative deactylase PdaA, to make muramic delta-lactam, a novel peptidoglycan constituent found only in spores. CwlD mutants show a germination defect.
Probab=24.01 E-value=2e+02 Score=26.58 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=19.2
Q ss_pred CHHHHHHHhc--CCcEEEeechhhhhh
Q 014542 290 SFCDQVKVMT--GTDVVASPHGAQLTN 314 (423)
Q Consensus 290 s~~eQv~l~~--~adVlIgvHGAgLTN 314 (423)
++.+.+++.+ .+|++|+.|--+..+
T Consensus 71 ~L~~R~~~An~~~adlfiSiH~Na~~~ 97 (189)
T TIGR02883 71 DLRKRVKLINESEADLFISIHLNAFPS 97 (189)
T ss_pred CHHHHHHHHHhcCCCEEEEEecCCCCC
Confidence 5777777776 579999999877643
No 62
>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....
Probab=23.94 E-value=1.7e+02 Score=25.13 Aligned_cols=78 Identities=15% Similarity=0.115 Sum_probs=53.1
Q ss_pred HHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhcccC-CCcEEEEEeeCCcccccccch
Q 014542 262 ATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNMLFMD-RNSSVMEFFPKGWLELAGVGQ 340 (423)
Q Consensus 262 e~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~lFm~-pgs~viEi~P~g~~~~~g~~~ 340 (423)
.++..+.|++ |++|.... ..+-.+-.+.+.++|++|+-.+..++--++-. |+-.+|...--|+-.
T Consensus 8 ~~~~~~~l~~------~~~v~~~~--~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~~~Lk~I~~~~~G~d~------ 73 (133)
T PF00389_consen 8 PDEEIERLEE------GFEVEFCD--SPSEEELAERLKDADAIIVGSGTPLTAEVLEAAPNLKLISTAGAGVDN------ 73 (133)
T ss_dssp SHHHHHHHHH------TSEEEEES--SSSHHHHHHHHTTESEEEESTTSTBSHHHHHHHTT-SEEEESSSSCTT------
T ss_pred CHHHHHHHHC------CceEEEeC--CCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhccceeEEEEEcccccCc------
Confidence 3566777776 55555555 67777888999999999998877676555543 888888888777632
Q ss_pred hHHHHHHhhcCCee
Q 014542 341 YAHHWMADQSGMRH 354 (423)
Q Consensus 341 ~~Y~~lA~~~Gl~h 354 (423)
... ..|...|+..
T Consensus 74 id~-~~a~~~gI~V 86 (133)
T PF00389_consen 74 IDL-EAAKERGIPV 86 (133)
T ss_dssp B-H-HHHHHTTSEE
T ss_pred ccH-HHHhhCeEEE
Confidence 122 3566677753
No 63
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=23.11 E-value=2e+02 Score=26.34 Aligned_cols=72 Identities=15% Similarity=0.119 Sum_probs=40.9
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhh----cccCCCc
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNM----LFMDRNS 322 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~----lFm~pgs 322 (423)
+|++++|+..| .+++.+.+.+. .+.++...+. .+..+..+.++++|++|..=.+|..+. ....++.
T Consensus 54 ~V~l~~R~~~~----~~~l~~~l~~~----~~~~~~~~~~--~~~~~~~~~~~~~diVi~at~~g~~~~~~~~~~~~~~~ 123 (194)
T cd01078 54 RVVLVGRDLER----AQKAADSLRAR----FGEGVGAVET--SDDAARAAAIKGADVVFAAGAAGVELLEKLAWAPKPLA 123 (194)
T ss_pred EEEEEcCCHHH----HHHHHHHHHhh----cCCcEEEeeC--CCHHHHHHHHhcCCEEEECCCCCceechhhhcccCcee
Confidence 45777775322 34555555432 2334443333 345555677889999999888888421 1223466
Q ss_pred EEEEEe
Q 014542 323 SVMEFF 328 (423)
Q Consensus 323 ~viEi~ 328 (423)
+|+.+.
T Consensus 124 vv~D~~ 129 (194)
T cd01078 124 VAADVN 129 (194)
T ss_pred EEEEcc
Confidence 777753
No 64
>PRK10431 N-acetylmuramoyl-l-alanine amidase II; Provisional
Probab=22.51 E-value=1.5e+02 Score=31.74 Aligned_cols=49 Identities=10% Similarity=-0.033 Sum_probs=33.3
Q ss_pred HHHHHhhccccCCcEEEEEe--CCCCCHHHHHHHhc--CCcEEEeechhhhhh
Q 014542 266 TEIFAEECAMVDGCVLKVEQ--SEDLSFCDQVKVMT--GTDVVASPHGAQLTN 314 (423)
Q Consensus 266 ~~~l~~~~~~~~G~~v~vv~--~~~ls~~eQv~l~~--~adVlIgvHGAgLTN 314 (423)
...|++.+....|++|...- ...+++.|=+++.+ +||++|++|--+..+
T Consensus 223 A~~L~~~L~~~~g~~VvlTR~~D~~v~L~eR~~iAn~~~ADLFISIHaNa~~~ 275 (445)
T PRK10431 223 ARKLRTLLNDDPMFKGVLTRDGDYFISVMGRSDVARKQNANFLVSIHADAAPN 275 (445)
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHHcCCCEEEEEccCCCCC
Confidence 33444444433577776552 24578888777777 899999999888765
No 65
>COG4195 Phage-related replication protein [General function prediction only]
Probab=22.39 E-value=2.3e+02 Score=27.22 Aligned_cols=63 Identities=19% Similarity=0.261 Sum_probs=36.5
Q ss_pred EEEEEecCCCcccCHHHHHHHHHhhcccc--------CCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh
Q 014542 248 LTLLMRRGSRSFKNATAVTEIFAEECAMV--------DGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ 311 (423)
Q Consensus 248 v~li~R~~~R~i~Ne~ev~~~l~~~~~~~--------~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg 311 (423)
|+++.=.|.|-=-...||+.++.+++... +..+..+ ......=..-++++.+.|++|++||=.
T Consensus 39 v~ilapHGG~IE~GvSELare~s~e~S~ylfegLk~~~ns~lHi-tS~~FDEp~al~~~~~h~~vis~HGy~ 109 (208)
T COG4195 39 VLILAPHGGGIEGGVSELAREFSDEYSGYLFEGLKSPDNSELHI-TSTRFDEPRALDLVSDHDYVISLHGYA 109 (208)
T ss_pred EEEEeccCCccCccHHHHHHHHHHHHHHHHHhhhcCCCCCcccc-cccccCcHHHHHHhccccEEEEecccc
Confidence 35555556553233778888888766321 1111111 112222234688999999999999953
No 66
>PLN02928 oxidoreductase family protein
Probab=22.10 E-value=61 Score=33.32 Aligned_cols=54 Identities=20% Similarity=0.301 Sum_probs=36.7
Q ss_pred cccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhh
Q 014542 258 SFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNM 315 (423)
Q Consensus 258 ~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~ 315 (423)
.++|+++|+++|++ ++..|+-+.|.+.|-++- .-.+...-.|+|+||=||.|.-
T Consensus 265 ~lVde~AL~~AL~~--g~i~gAaLDV~~~EP~~~--~~pL~~~~nviiTPHia~~t~~ 318 (347)
T PLN02928 265 GLLDYDAVLAALES--GHLGGLAIDVAWSEPFDP--DDPILKHPNVIITPHVAGVTEY 318 (347)
T ss_pred cccCHHHHHHHHHc--CCeeEEEEccCCCCCCCC--CChhhcCCCEEECCcCCCChHH
Confidence 68999999999997 233455566665443321 1135566789999998877643
No 67
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.71 E-value=4e+02 Score=26.99 Aligned_cols=70 Identities=7% Similarity=0.126 Sum_probs=47.3
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
+++++.|.+ ++ -.-+...|.+ .|+.|.+....+-.+ -+.+.+|||+|+.=| +++-..=|.+||++||
T Consensus 166 ~vvViGrs~---iV-GkPla~lL~~-----~~atVtv~hs~T~~l---~~~~~~ADIvv~AvG~p~~i~~~~vk~gavVI 233 (287)
T PRK14176 166 NAVIVGHSN---VV-GKPMAAMLLN-----RNATVSVCHVFTDDL---KKYTLDADILVVATGVKHLIKADMVKEGAVIF 233 (287)
T ss_pred EEEEECCCc---cc-HHHHHHHHHH-----CCCEEEEEeccCCCH---HHHHhhCCEEEEccCCccccCHHHcCCCcEEE
Confidence 558898763 12 2235556655 477888876554333 446789999997444 5666666889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+-
T Consensus 234 DvG 236 (287)
T PRK14176 234 DVG 236 (287)
T ss_pred Eec
Confidence 975
No 68
>cd01976 Nitrogenase_MoFe_alpha Nitrogenase_MoFe_alpha_II: Nitrogenase MoFe protein, beta subunit. A group of proteins similar to the alpha subunit of the MoFe protein of the molybdenum (Mo-) nitrogenase. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Mo-nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=21.68 E-value=3e+02 Score=28.94 Aligned_cols=84 Identities=13% Similarity=-0.008 Sum_probs=57.1
Q ss_pred ccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh---hhhhcccCCCcEEEEEeeCCcccc
Q 014542 259 FKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ---LTNMLFMDRNSSVMEFFPKGWLEL 335 (423)
Q Consensus 259 i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg---LTN~lFm~pgs~viEi~P~g~~~~ 335 (423)
--|..|+.+.|++ .|+++......+.++ |+++-+.+|..-|.+...+ ++..|==+=|.-.++..|.|....
T Consensus 184 ~~d~~el~~lL~~-----~Gi~v~~~~~~~~t~-eei~~~~~A~lniv~~~~~~~~~a~~Le~~fGiP~~~~~p~Gi~~t 257 (421)
T cd01976 184 GGDAWASRILLEE-----MGLRVVAQWSGDGTL-NEMENAHKAKLNLIHCYRSMNYIARMMEEKYGIPWMEYNFFGPTKI 257 (421)
T ss_pred CccHHHHHHHHHH-----cCCeEEEEeCCCCCH-HHHHhcccCCEEEEECcHHHHHHHHHHHHHhCCcEEecccCCHHHH
Confidence 3577889999987 688888767777776 7777888887766664322 344442233666777777776443
Q ss_pred cccchhHHHHHHhhcCC
Q 014542 336 AGVGQYAHHWMADQSGM 352 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl 352 (423)
..+++.+|+..|.
T Consensus 258 ----~~~l~~ia~~~g~ 270 (421)
T cd01976 258 ----AESLRKIAAYFDD 270 (421)
T ss_pred ----HHHHHHHHHHhCc
Confidence 2467888888886
No 69
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=21.18 E-value=4.1e+02 Score=27.00 Aligned_cols=74 Identities=11% Similarity=0.247 Sum_probs=47.0
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.=+...|.++- ...++.|.+....+-.+.+ ...+|||+|+.=| +++-..=|.+||++||
T Consensus 159 ~vvViGrS~---iV-GkPla~lL~~~~-~~~~aTVtvchs~T~nl~~---~~~~ADIvIsAvGkp~~i~~~~vk~gavVI 230 (293)
T PRK14185 159 KCVVLGRSN---IV-GKPMAQLMMQKA-YPGDCTVTVCHSRSKNLKK---ECLEADIIIAALGQPEFVKADMVKEGAVVI 230 (293)
T ss_pred EEEEECCCc---cc-hHHHHHHHHcCC-CCCCCEEEEecCCCCCHHH---HHhhCCEEEEccCCcCccCHHHcCCCCEEE
Confidence 568999874 11 112444554410 0014677777665554443 5678999998877 5666677889999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
-+=
T Consensus 231 DvG 233 (293)
T PRK14185 231 DVG 233 (293)
T ss_pred Eec
Confidence 873
No 70
>KOG3922 consensus Sulfotransferases [Posttranslational modification, protein turnover, chaperones]
Probab=21.10 E-value=1.3e+02 Score=30.99 Aligned_cols=55 Identities=20% Similarity=0.263 Sum_probs=38.8
Q ss_pred CCCCeeEEEEEEec---CCCcccCHHHHHHHHHhhccccCCcEEEEEeC----CCCCHHHHHHHhcCCc
Q 014542 241 KGQPIIRLTLLMRR---GSRSFKNATAVTEIFAEECAMVDGCVLKVEQS----EDLSFCDQVKVMTGTD 302 (423)
Q Consensus 241 ~~~p~irv~li~R~---~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~----~~ls~~eQv~l~~~ad 302 (423)
..++-..+++.+|- |++.++| ++..|-++ .||.|.-+.. .-+|..||++.|++..
T Consensus 73 ~~~~~~~vViyNRVpKtGStTf~n---iaydL~ek----n~F~vlh~nvtkn~~vlsl~dQ~qfvknIs 134 (361)
T KOG3922|consen 73 TDKEEMEVVIYNRVPKTGSTTFVN---IAYDLSEK----NGFHVLHINVTKNETVLSLPDQQQFVKNIS 134 (361)
T ss_pred cccccceEEEEecCCCccchhHHH---HHHHHHhc----cCceEEEeeccccceeeccHHHHHHHHhhc
Confidence 44555567999993 8999998 44444432 6888765543 3488999999998865
No 71
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=21.09 E-value=1.2e+02 Score=29.27 Aligned_cols=58 Identities=21% Similarity=0.207 Sum_probs=40.0
Q ss_pred CHHHHHHHhcCCcEEEeechhhhhhhcccCCCcEEEEEeeCCcccccccchhHHHHHHhhcCCeee
Q 014542 290 SFCDQVKVMTGTDVVASPHGAQLTNMLFMDRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMRHR 355 (423)
Q Consensus 290 s~~eQv~l~~~adVlIgvHGAgLTN~lFm~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~h~ 355 (423)
.+++-++.-.++||+|.+-=-|=||++|.++-..=+.+-+..|. ..-..|+-+|+...
T Consensus 103 ~i~~~~~~~~d~dvviaP~~gGGTn~L~~r~~~~~~~y~g~SF~--------~Hl~~Ark~G~~~~ 160 (210)
T COG1920 103 HIERALSAAKDADVVIAPGRGGGTNVLFARKSAFRPRYGGVSFL--------RHLEEARKRGLVVL 160 (210)
T ss_pred HHHHHHHhcCCCcEEEecCCCCceEEEEEecccccccccCccHH--------HHHHHHHHcCCEEE
Confidence 35567777888999999999999999999993221222222221 23347999999864
No 72
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.63 E-value=3.3e+02 Score=27.53 Aligned_cols=70 Identities=9% Similarity=0.109 Sum_probs=47.2
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM 325 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi 325 (423)
++++|.|.. ++ -.-+...|.+ .|..|.+....+-. --+.+.+|||+|+.=| +++...=|.+||++||
T Consensus 161 ~vvViGrs~---iV-G~Pla~lL~~-----~~atVtv~hs~T~~---l~~~~~~ADIvi~avG~p~~v~~~~vk~gavVI 228 (285)
T PRK10792 161 NAVVVGASN---IV-GRPMSLELLL-----AGCTVTVCHRFTKN---LRHHVRNADLLVVAVGKPGFIPGEWIKPGAIVI 228 (285)
T ss_pred EEEEECCCc---cc-HHHHHHHHHH-----CCCeEEEEECCCCC---HHHHHhhCCEEEEcCCCcccccHHHcCCCcEEE
Confidence 558898763 11 2235555654 46778777654432 2346789999999876 5566666789999999
Q ss_pred EEe
Q 014542 326 EFF 328 (423)
Q Consensus 326 Ei~ 328 (423)
.+-
T Consensus 229 DvG 231 (285)
T PRK10792 229 DVG 231 (285)
T ss_pred Ecc
Confidence 985
No 73
>TIGR01860 VNFD nitrogenase vanadium-iron protein, alpha chain. This model represents the alpha chain of the vanadium-containing component of the vanadium-iron nitrogenase compound I. The complex also includes a second alpha chain, two beta chains and two delta chains. Compount I interacts with compound II also known as the iron-protein which transfers electrons to compound I where the catalysis occurs.
Probab=20.45 E-value=2.4e+02 Score=30.11 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=57.7
Q ss_pred ccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech--hh-hhhhcccCCCcEEEEEeeCCcccc
Q 014542 259 FKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG--AQ-LTNMLFMDRNSSVMEFFPKGWLEL 335 (423)
Q Consensus 259 i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG--Ag-LTN~lFm~pgs~viEi~P~g~~~~ 335 (423)
.-|..|+.+.|++ .|+++......+.++ |+++-+.+|..-|.+.+ ++ ++..|=-+=|.-.+++-|.|.-+.
T Consensus 213 ~gd~~el~~lL~~-----~Gi~v~~~~~g~~t~-~ei~~~~~A~lnlv~~~~~~~~~A~~Leer~GiP~~~~~p~Gi~~T 286 (461)
T TIGR01860 213 QGDTQVLQKYWDK-----MGIQVIAHFTGNGTY-DDLRCMHRAQLNVVNCARSAGYIANELKKRYGIPRLDVDTWGFNYM 286 (461)
T ss_pred cccHHHHHHHHHH-----cCCcEEEEeCCCCCH-HHHHhcccCcEEEEECchHHHHHHHHHHHHhCCCeecCCcCCHHHH
Confidence 4567889999987 588887666677777 66778888888665443 22 334443344666777778776543
Q ss_pred cccchhHHHHHHhhcCCe
Q 014542 336 AGVGQYAHHWMADQSGMR 353 (423)
Q Consensus 336 ~g~~~~~Y~~lA~~~Gl~ 353 (423)
..+.+.+|+..|+.
T Consensus 287 ----~~~L~~la~~~g~~ 300 (461)
T TIGR01860 287 ----AEALRKIGAFFGIE 300 (461)
T ss_pred ----HHHHHHHHHHhCCc
Confidence 24677788888865
No 74
>PRK06407 ornithine cyclodeaminase; Provisional
Probab=20.37 E-value=2.1e+02 Score=28.81 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=42.1
Q ss_pred EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhc---ccCCCcE
Q 014542 247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNML---FMDRNSS 323 (423)
Q Consensus 247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~l---Fm~pgs~ 323 (423)
+|.+.+|+..| .+++.+.++++ .|.++.++.. --+.+.+|||+++.-++. +=++ |++||+.
T Consensus 144 ~v~v~~r~~~~----a~~f~~~~~~~----~~~~v~~~~~-------~~eav~~aDIV~taT~s~-~P~~~~~~l~pg~h 207 (301)
T PRK06407 144 RIRVYSRNFDH----ARAFAERFSKE----FGVDIRPVDN-------AEAALRDADTITSITNSD-TPIFNRKYLGDEYH 207 (301)
T ss_pred EEEEECCCHHH----HHHHHHHHHHh----cCCcEEEeCC-------HHHHHhcCCEEEEecCCC-CcEecHHHcCCCce
Confidence 44677766433 56777777763 3556666522 234568999999988765 2222 6788887
Q ss_pred EEEEe
Q 014542 324 VMEFF 328 (423)
Q Consensus 324 viEi~ 328 (423)
|.=|=
T Consensus 208 V~aiG 212 (301)
T PRK06407 208 VNLAG 212 (301)
T ss_pred EEecC
Confidence 76653
No 75
>TIGR01284 alt_nitrog_alph nitrogenase alpha chain. This model represents the alpha chains of various forms of the nitrogen-fixing enzyme nitrogenase: vanadium-iron, iron-iron, and molybdenum-iron. Most examples of NifD, the molybdenum-iron type nitrogenase alpha chain, are excluded from this model and described instead by equivalog model TIGR01282. It appears by phylogenetic and UPGMA trees that this model represents a distinct clade of NifD homologs, in which arose several molybdenum-independent forms.
Probab=20.33 E-value=2.9e+02 Score=29.52 Aligned_cols=84 Identities=10% Similarity=0.054 Sum_probs=57.2
Q ss_pred cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeec---hhhhhhhcccCCCcEEEEEeeCCccccc
Q 014542 260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPH---GAQLTNMLFMDRNSSVMEFFPKGWLELA 336 (423)
Q Consensus 260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvH---GAgLTN~lFm~pgs~viEi~P~g~~~~~ 336 (423)
-|.+|+.+.|++ .|+++......+.++ ++++-+.+|+.-|.+. |..++..|=-+=|.-.+.+-|.|.-..
T Consensus 212 gd~~el~~lL~~-----~Gl~v~~~~~g~~s~-~ei~~~~~A~lniv~~~~~~~~~A~~Le~~~GiP~~~~~~~G~~~T- 284 (457)
T TIGR01284 212 GDLWVLKKYFER-----MGIQVLSTFTGNGCY-DELRWMHRAKLNVVRCARSANYIANELEERYGIPRLDIDFFGFEYC- 284 (457)
T ss_pred hhHHHHHHHHHH-----cCCeEEEEECCCCCH-HHHHhccccCEEEEEChHHHHHHHHHHHHHhCCCeEecccCCHHHH-
Confidence 456778888887 688887677777676 6777888888755543 333555554444777777767766433
Q ss_pred ccchhHHHHHHhhcCCe
Q 014542 337 GVGQYAHHWMADQSGMR 353 (423)
Q Consensus 337 g~~~~~Y~~lA~~~Gl~ 353 (423)
...++.+|+..|+.
T Consensus 285 ---~~~l~~ia~~~g~~ 298 (457)
T TIGR01284 285 ---AKNLRKIGEFFGIE 298 (457)
T ss_pred ---HHHHHHHHHHhCCc
Confidence 24677888888875
No 76
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=20.06 E-value=1.8e+02 Score=26.78 Aligned_cols=61 Identities=13% Similarity=0.233 Sum_probs=40.2
Q ss_pred HHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhhcccCCC-cEEEEEeeCCcc
Q 014542 263 TAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNMLFMDRN-SSVMEFFPKGWL 333 (423)
Q Consensus 263 ~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~lFm~pg-s~viEi~P~g~~ 333 (423)
.++.+.|++.++ +.+ +-......+++.+-...+..-+=+||+| .|.||. ..++||+|....
T Consensus 94 ~~~~~~l~~~~~--~~~-ilasnTSsl~i~~la~~~~~p~R~ig~H-------f~~P~~~~~lVEvv~~~~T 155 (180)
T PF02737_consen 94 QELFAELDEICP--PDT-ILASNTSSLSISELAAALSRPERFIGMH-------FFNPPHLMPLVEVVPGPKT 155 (180)
T ss_dssp HHHHHHHHCCS---TTS-EEEE--SSS-HHHHHTTSSTGGGEEEEE-------E-SSTTT--EEEEEE-TTS
T ss_pred HHHHHHHHHHhC--CCc-eEEecCCCCCHHHHHhccCcCceEEEEe-------cccccccCceEEEeCCCCC
Confidence 567788877553 231 3333567899999999998999999999 456876 689999997754
Done!