Query         014542
Match_columns 423
No_of_seqs    250 out of 583
Neff          5.8 
Searched_HMMs 29240
Date          Mon Mar 25 13:28:16 2013
Command       hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014542.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014542hhsearch_pdb -cpu 12 -v 0 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 4a5o_A Bifunctional protein fo  69.3      14 0.00049   35.8   8.3   70  247-328   163-233 (286)
  2 3ngx_A Bifunctional protein fo  65.3      18  0.0006   35.0   8.0   70  247-328   152-222 (276)
  3 3p2o_A Bifunctional protein fo  64.1      23 0.00079   34.3   8.6   70  247-328   162-232 (285)
  4 3l07_A Bifunctional protein fo  63.2      24 0.00083   34.1   8.6   70  247-328   163-233 (285)
  5 4a26_A Putative C-1-tetrahydro  60.7      22 0.00074   34.7   7.7   72  247-328   167-239 (300)
  6 3tnl_A Shikimate dehydrogenase  60.4      37  0.0013   33.0   9.4   93  247-353   180-281 (315)
  7 4b4u_A Bifunctional protein fo  58.9      48  0.0017   32.3   9.8   69  247-327   181-250 (303)
  8 3t4e_A Quinate/shikimate dehyd  53.4      52  0.0018   31.9   9.1   93  247-353   174-275 (312)
  9 3czx_A Putative N-acetylmuramo  51.9      11 0.00037   33.8   3.7   47  268-314    36-84  (182)
 10 2q62_A ARSH; alpha/beta, flavo  51.2      32  0.0011   32.1   7.0   60  245-306    34-104 (247)
 11 3jyo_A Quinate/shikimate dehyd  44.9      26  0.0009   33.4   5.4   88  247-353   153-247 (283)
 12 3fni_A Putative diflavin flavo  41.8      43  0.0015   28.7   5.8  140  244-411     5-155 (159)
 13 1jwq_A N-acetylmuramoyl-L-alan  41.4      33  0.0011   30.5   5.2   87  266-358    34-124 (179)
 14 2amj_A Modulator of drug activ  41.1      52  0.0018   29.4   6.5   46  260-306    30-76  (204)
 15 1a4i_A Methylenetetrahydrofola  40.4      44  0.0015   32.5   6.2   70  247-328   167-237 (301)
 16 3hly_A Flavodoxin-like domain;  38.7      45  0.0015   28.5   5.5   53  247-305     4-56  (161)
 17 2fzv_A Putative arsenical resi  36.9      62  0.0021   30.9   6.6   60  245-306    58-129 (279)
 18 1rtt_A Conserved hypothetical   36.6      77  0.0026   27.4   6.8   56  247-305     8-77  (193)
 19 1b0a_A Protein (fold bifunctio  36.4      54  0.0019   31.7   6.1   70  247-328   161-231 (288)
 20 3fvw_A Putative NAD(P)H-depend  35.4      82  0.0028   27.6   6.9   57  247-306     4-73  (192)
 21 3rpe_A MDAB, modulator of drug  34.7      50  0.0017   30.4   5.4   61  245-306    25-89  (218)
 22 2ohh_A Type A flavoprotein FPR  32.3      84  0.0029   30.3   6.9   55  245-305   258-312 (404)
 23 2q9u_A A-type flavoprotein; fl  27.7 1.5E+02  0.0053   28.6   8.0   63  245-313   258-323 (414)
 24 2c2x_A Methylenetetrahydrofola  26.7      91  0.0031   30.0   5.8   70  247-328   160-232 (281)
 25 2vzf_A NADH-dependent FMN redu  26.4      81  0.0028   27.6   5.2   67  247-315     4-87  (197)
 26 3qay_A Endolysin; amidase A/B   25.9   1E+02  0.0035   27.2   5.7   36  277-312    45-89  (180)
 27 3ne8_A N-acetylmuramoyl-L-alan  25.5      91  0.0031   28.9   5.5   37  278-314    48-88  (234)
 28 3l4e_A Uncharacterized peptida  24.8      80  0.0027   28.5   4.9   63  247-314    29-93  (206)
 29 3o8q_A Shikimate 5-dehydrogena  24.1      55  0.0019   31.1   3.8   82  247-353   152-239 (281)
 30 3u7q_A Nitrogenase molybdenum-  23.8      90  0.0031   32.1   5.6   82  260-351   233-317 (492)
 31 4hs4_A Chromate reductase; tri  23.4 1.2E+02   0.004   27.0   5.6   58  246-306     7-79  (199)
 32 3lcm_A SMU.1420, putative oxid  22.8 1.8E+02  0.0061   25.5   6.7   56  247-305     2-78  (196)

No 1  
>4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1}
Probab=69.31  E-value=14  Score=35.76  Aligned_cols=70  Identities=13%  Similarity=0.192  Sum_probs=49.6

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      +++++.|.+.   + =.-+...|..     .|+.|.+....+..+.+   .+.+|||+|+.-|+. +...=|.+||++||
T Consensus       163 ~vvVvGrs~i---V-G~plA~lL~~-----~gAtVtv~hs~T~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  230 (286)
T 4a5o_A          163 DAVVVGASNI---V-GRPMALELLL-----GGCTVTVTHRFTRDLAD---HVSRADLVVVAAGKPGLVKGEWIKEGAIVI  230 (286)
T ss_dssp             EEEEECTTST---T-HHHHHHHHHH-----TTCEEEEECTTCSCHHH---HHHTCSEEEECCCCTTCBCGGGSCTTCEEE
T ss_pred             EEEEECCCch---h-HHHHHHHHHH-----CCCeEEEEeCCCcCHHH---HhccCCEEEECCCCCCCCCHHHcCCCeEEE
Confidence            5589988642   2 1234445554     48888888766666654   467999999998875 65666779999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      -+-
T Consensus       231 Dvg  233 (286)
T 4a5o_A          231 DVG  233 (286)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            985


No 2  
>3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A
Probab=65.29  E-value=18  Score=34.96  Aligned_cols=70  Identities=13%  Similarity=0.181  Sum_probs=49.6

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+.   + -.-+...|.+     .|++|.+....+.++.+   .+.+|||+|+.=|+. +...=|.+||++||
T Consensus       152 ~vvVvG~s~i---V-G~plA~lL~~-----~gAtVtv~~~~t~~L~~---~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  219 (276)
T 3ngx_A          152 TVTIVNRSPV---V-GRPLSMMLLN-----RNYTVSVCHSKTKDIGS---MTRSSKIVVVAVGRPGFLNREMVTPGSVVI  219 (276)
T ss_dssp             EEEEECCCTT---T-HHHHHHHHHH-----TTCEEEEECTTCSCHHH---HHHHSSEEEECSSCTTCBCGGGCCTTCEEE
T ss_pred             EEEEEcCChH---H-HHHHHHHHHH-----CCCeEEEEeCCcccHHH---hhccCCEEEECCCCCccccHhhccCCcEEE
Confidence            5589988642   1 1234445554     48888888766666655   467999999998874 55556779999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      -+-
T Consensus       220 Dvg  222 (276)
T 3ngx_A          220 DVG  222 (276)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            985


No 3  
>3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp}
Probab=64.08  E-value=23  Score=34.28  Aligned_cols=70  Identities=9%  Similarity=0.117  Sum_probs=49.0

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      +++++.|.+.   + =.-+...|..     .|+.|.+....+..+.   +.+.+|||+|+.=|+. +...=|.+||++||
T Consensus       162 ~vvVvGrs~i---V-G~p~A~lL~~-----~gAtVtv~h~~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  229 (285)
T 3p2o_A          162 DAVIIGASNI---V-GRPMATMLLN-----AGATVSVCHIKTKDLS---LYTRQADLIIVAAGCVNLLRSDMVKEGVIVV  229 (285)
T ss_dssp             EEEEECCCTT---T-HHHHHHHHHH-----TTCEEEEECTTCSCHH---HHHTTCSEEEECSSCTTCBCGGGSCTTEEEE
T ss_pred             EEEEECCCch---H-HHHHHHHHHH-----CCCeEEEEeCCchhHH---HHhhcCCEEEECCCCCCcCCHHHcCCCeEEE
Confidence            5589988652   1 1224445554     4888888876555554   4578999999988875 55556779999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      -+-
T Consensus       230 DVg  232 (285)
T 3p2o_A          230 DVG  232 (285)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            984


No 4  
>3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis}
Probab=63.20  E-value=24  Score=34.10  Aligned_cols=70  Identities=7%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+.   + =.-+...|..     .|+.|.+....+..+.   +.+.+|||+|+.=|+. +-..=|.+||++||
T Consensus       163 ~vvVIG~s~i---V-G~p~A~lL~~-----~gAtVtv~hs~t~~L~---~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  230 (285)
T 3l07_A          163 YAVVVGASNV---V-GKPVSQLLLN-----AKATVTTCHRFTTDLK---SHTTKADILIVAVGKPNFITADMVKEGAVVI  230 (285)
T ss_dssp             EEEEECCCTT---T-HHHHHHHHHH-----TTCEEEEECTTCSSHH---HHHTTCSEEEECCCCTTCBCGGGSCTTCEEE
T ss_pred             EEEEECCCch---h-HHHHHHHHHH-----CCCeEEEEeCCchhHH---HhcccCCEEEECCCCCCCCCHHHcCCCcEEE
Confidence            4588887651   1 1224445554     4788888766555555   4578999999988865 55555679999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      .+-
T Consensus       231 Dvg  233 (285)
T 3l07_A          231 DVG  233 (285)
T ss_dssp             ECC
T ss_pred             Eec
Confidence            984


No 5  
>4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major}
Probab=60.68  E-value=22  Score=34.72  Aligned_cols=72  Identities=13%  Similarity=0.217  Sum_probs=48.3

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+.   + =.-+...|.+     .|++|.+....+..+. -.+.+.+|||+|+.=|.. +...=|.+||++||
T Consensus       167 ~vvVIG~s~i---V-G~p~A~lL~~-----~gAtVtv~~~~T~~l~-l~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  236 (300)
T 4a26_A          167 RAVVLGRSNI---V-GAPVAALLMK-----ENATVTIVHSGTSTED-MIDYLRTADIVIAAMGQPGYVKGEWIKEGAAVV  236 (300)
T ss_dssp             EEEEECCCTT---T-HHHHHHHHHH-----TTCEEEEECTTSCHHH-HHHHHHTCSEEEECSCCTTCBCGGGSCTTCEEE
T ss_pred             EEEEECCCch---H-HHHHHHHHHH-----CCCeEEEEeCCCCCch-hhhhhccCCEEEECCCCCCCCcHHhcCCCcEEE
Confidence            4588887652   1 1224445554     4788887765444333 015788999999988875 55556789999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      .+-
T Consensus       237 Dvg  239 (300)
T 4a26_A          237 DVG  239 (300)
T ss_dssp             ECC
T ss_pred             EEe
Confidence            985


No 6  
>3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A*
Probab=60.36  E-value=37  Score=33.01  Aligned_cols=93  Identities=14%  Similarity=0.186  Sum_probs=59.2

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh---------hcc
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN---------MLF  317 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN---------~lF  317 (423)
                      +|++++|+..+ ....+++.+.+.+.    .|+++.++.+++.  .+--+.+.++||||..-.+|+..         .-+
T Consensus       180 ~V~i~nR~~~~-~~~a~~la~~~~~~----~~~~~~~~~~~~~--~~l~~~l~~aDiIINaTp~Gm~~~~~~~p~~~~~~  252 (315)
T 3tnl_A          180 EISIFNRKDDF-YANAEKTVEKINSK----TDCKAQLFDIEDH--EQLRKEIAESVIFTNATGVGMKPFEGETLLPSADM  252 (315)
T ss_dssp             EEEEEECSSTT-HHHHHHHHHHHHHH----SSCEEEEEETTCH--HHHHHHHHTCSEEEECSSTTSTTSTTCCSCCCGGG
T ss_pred             EEEEEECCCch-HHHHHHHHHHhhhh----cCCceEEeccchH--HHHHhhhcCCCEEEECccCCCCCCCCCCCCCcHHH
Confidence            45888887432 33456666666653    4566777766542  22234677999999888777642         224


Q ss_pred             cCCCcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542          318 MDRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR  353 (423)
Q Consensus       318 m~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~  353 (423)
                      ++++.+|++++-.-. +      ..+-..|+..|.+
T Consensus       253 l~~~~~V~DlvY~P~-~------T~ll~~A~~~G~~  281 (315)
T 3tnl_A          253 LRPELIVSDVVYKPT-K------TRLLEIAEEQGCQ  281 (315)
T ss_dssp             CCTTCEEEESCCSSS-S------CHHHHHHHHTTCE
T ss_pred             cCCCCEEEEeccCCC-C------CHHHHHHHHCCCe
Confidence            678899999873221 1      2566778888875


No 7  
>4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A*
Probab=58.90  E-value=48  Score=32.33  Aligned_cols=69  Identities=10%  Similarity=0.258  Sum_probs=47.9

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+   ++ -.=+...|.+     .++.|.+....+-.+.+   ...+|||+|+.=| +++...=|.+||++||
T Consensus       181 ~vvViGRS~---iV-GkPla~LL~~-----~~ATVTi~Hs~T~dl~~---~~~~ADIvV~A~G~p~~i~~d~vk~GavVI  248 (303)
T 4b4u_A          181 HAVVVGRSA---IL-GKPMAMMLLQ-----ANATVTICHSRTQNLPE---LVKQADIIVGAVGKAELIQKDWIKQGAVVV  248 (303)
T ss_dssp             EEEEECCCT---TT-HHHHHHHHHH-----TTCEEEEECTTCSSHHH---HHHTCSEEEECSCSTTCBCGGGSCTTCEEE
T ss_pred             EEEEEeccc---cc-cchHHHHHHh-----cCCEEEEecCCCCCHHH---HhhcCCeEEeccCCCCccccccccCCCEEE
Confidence            458998864   11 1223444444     47788888877766655   5668999998866 4555556899999999


Q ss_pred             EE
Q 014542          326 EF  327 (423)
Q Consensus       326 Ei  327 (423)
                      -+
T Consensus       249 DV  250 (303)
T 4b4u_A          249 DA  250 (303)
T ss_dssp             EC
T ss_pred             Ee
Confidence            86


No 8  
>3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A*
Probab=53.41  E-value=52  Score=31.93  Aligned_cols=93  Identities=18%  Similarity=0.262  Sum_probs=58.6

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhh---h------hcc
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLT---N------MLF  317 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLT---N------~lF  317 (423)
                      +|++++|+..| ....+++.+.+.+.    .|+.+.....+++.  +-.+.+.++||||..-.+||.   .      .-+
T Consensus       174 ~v~v~nRt~~~-~~~a~~la~~~~~~----~~~~v~~~~~~~l~--~~~~~l~~~DiIINaTp~Gm~~~~~~~~~~~~~~  246 (312)
T 3t4e_A          174 EIKLFNRKDDF-FEKAVAFAKRVNEN----TDCVVTVTDLADQH--AFTEALASADILTNGTKVGMKPLENESLIGDVSL  246 (312)
T ss_dssp             EEEEEECSSTH-HHHHHHHHHHHHHH----SSCEEEEEETTCHH--HHHHHHHHCSEEEECSSTTSTTSTTCCSCCCGGG
T ss_pred             EEEEEECCCch-HHHHHHHHHHhhhc----cCcceEEechHhhh--hhHhhccCceEEEECCcCCCCCCCCCcccCCHHH
Confidence            45888887443 33355666666653    35666666665431  113457789999988888872   1      124


Q ss_pred             cCCCcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542          318 MDRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR  353 (423)
Q Consensus       318 m~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~  353 (423)
                      ++++.+|++++-.-. +      ..+-..|+..|.+
T Consensus       247 l~~~~~v~D~vY~P~-~------T~ll~~A~~~G~~  275 (312)
T 3t4e_A          247 LRPELLVTECVYNPH-M------TKLLQQAQQAGCK  275 (312)
T ss_dssp             SCTTCEEEECCCSSS-S------CHHHHHHHHTTCE
T ss_pred             cCCCCEEEEeccCCC-C------CHHHHHHHHCCCe
Confidence            678899999873221 1      2566778888875


No 9  
>3czx_A Putative N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI, MCSG, protein structure initiative; 1.60A {Neisseria meningitidis MC58}
Probab=51.89  E-value=11  Score=33.75  Aligned_cols=47  Identities=26%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             HHHhhccccCCcEEEEEe--CCCCCHHHHHHHhcCCcEEEeechhhhhh
Q 014542          268 IFAEECAMVDGCVLKVEQ--SEDLSFCDQVKVMTGTDVVASPHGAQLTN  314 (423)
Q Consensus       268 ~l~~~~~~~~G~~v~vv~--~~~ls~~eQv~l~~~adVlIgvHGAgLTN  314 (423)
                      .|++.+...+|++|...-  -...++.+-+++.++||++|+.|--+..|
T Consensus        36 ~l~~~L~~~~G~~V~~tR~~d~~~~L~~R~~~an~adlfISIH~Na~~~   84 (182)
T 3czx_A           36 IVASILRNDYGLTVKTDGTGKGNMPLRDAVKLIRGSDVAIEFHTNAAAN   84 (182)
T ss_dssp             HHHHHHHHHHCCCEEESCSSCCCCCHHHHHHHHHTCSEEEEECCBCCSS
T ss_pred             HHHHHHhhcCCcEEEEecCCCccCCHHHHHHHhhCCCEEEEeccCCCCC
Confidence            344333332387776552  34578999999999999999999776654


No 10 
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=51.18  E-value=32  Score=32.11  Aligned_cols=60  Identities=13%  Similarity=0.050  Sum_probs=40.1

Q ss_pred             eeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCC-----------HHHHHHHhcCCcEEEe
Q 014542          245 IIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLS-----------FCDQVKVMTGTDVVAS  306 (423)
Q Consensus       245 ~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls-----------~~eQv~l~~~adVlIg  306 (423)
                      ..+|++|.=. .|.=.|-..+++.+.+.+.. .|.+++++++.+++           +.+-++.+.+||.||=
T Consensus        34 ~mkIliI~GS-~r~~s~t~~La~~~~~~l~~-~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~  104 (247)
T 2q62_A           34 RPRILILYGS-LRTVSYSRLLAEEARRLLEF-FGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVW  104 (247)
T ss_dssp             CCEEEEEECC-CCSSCHHHHHHHHHHHHHHH-TTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEE
T ss_pred             CCeEEEEEcc-CCCCCHHHHHHHHHHHHHhh-CCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEE
Confidence            3466777633 23334555555555544332 68899999887777           7778889999998874


No 11 
>3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A
Probab=44.87  E-value=26  Score=33.37  Aligned_cols=88  Identities=14%  Similarity=0.101  Sum_probs=53.6

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh-------hcccC
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN-------MLFMD  319 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN-------~lFm~  319 (423)
                      +|++++|+..|    .+++.+.+....   +++++.....+++  .   +.+.++||||..-.+|+..       .-+++
T Consensus       153 ~v~i~~R~~~~----a~~la~~~~~~~---~~~~i~~~~~~~l--~---~~l~~~DiVInaTp~Gm~~~~~~pi~~~~l~  220 (283)
T 3jyo_A          153 KLQVADLDTSR----AQALADVINNAV---GREAVVGVDARGI--E---DVIAAADGVVNATPMGMPAHPGTAFDVSCLT  220 (283)
T ss_dssp             EEEEECSSHHH----HHHHHHHHHHHH---TSCCEEEECSTTH--H---HHHHHSSEEEECSSTTSTTSCSCSSCGGGCC
T ss_pred             EEEEEECCHHH----HHHHHHHHHhhc---CCceEEEcCHHHH--H---HHHhcCCEEEECCCCCCCCCCCCCCCHHHhC
Confidence            34777765333    456666666532   3445555544332  2   4567899999887777643       22567


Q ss_pred             CCcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542          320 RNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR  353 (423)
Q Consensus       320 pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~  353 (423)
                      ++++|++++-.-. +      ..+-..|+..|.+
T Consensus       221 ~~~~v~DlvY~P~-~------T~ll~~A~~~G~~  247 (283)
T 3jyo_A          221 KDHWVGDVVYMPI-E------TELLKAARALGCE  247 (283)
T ss_dssp             TTCEEEECCCSSS-S------CHHHHHHHHHTCC
T ss_pred             CCCEEEEecCCCC-C------CHHHHHHHHCcCe
Confidence            8899999873221 1      2466678888875


No 12 
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=41.76  E-value=43  Score=28.71  Aligned_cols=140  Identities=11%  Similarity=0.038  Sum_probs=74.2

Q ss_pred             CeeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCC-CHHHHHHHhcCCcEEE---eechhhhhhhccc-
Q 014542          244 PIIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDL-SFCDQVKVMTGTDVVA---SPHGAQLTNMLFM-  318 (423)
Q Consensus       244 p~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~l-s~~eQv~l~~~adVlI---gvHGAgLTN~lFm-  318 (423)
                      .++-|+|.|..|     |-+.+++++.+.+.. .|.++++++.... +..+.+..+.++|.+|   ..+|..+...-|+ 
T Consensus         5 ~kv~IvY~S~~G-----nT~~iA~~ia~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~g~~p~~~~l~   78 (159)
T 3fni_A            5 TSIGVFYVSEYG-----YSDRLAQAIINGITK-TGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAASAASIQGALS   78 (159)
T ss_dssp             CEEEEEECTTST-----THHHHHHHHHHHHHH-TTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTTSHHHHHHHHH
T ss_pred             CEEEEEEECCCh-----HHHHHHHHHHHHHHH-CCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCCCCccHHHHHH
Confidence            466667777764     334444444433322 5888989988888 8888888888888665   3444334311121 


Q ss_pred             ------CCCcEEEEEeeCCcccccccchhHHHHHHhhcCCeeeeeecCCCCCCCCCCCCCcccccccccCCccccchhhH
Q 014542          319 ------DRNSSVMEFFPKGWLELAGVGQYAHHWMADQSGMRHRGAWWDPLVQEECPTPHNDLECFKFDKNGQVGHNETYF  392 (423)
Q Consensus       319 ------~pgs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~h~~~w~d~~~~~~c~~~~~~~~C~~~yk~q~V~ln~t~f  392 (423)
                            .+|-.+.=+-.++|.   +..........+..|..-..   ++......|             +   .=++...
T Consensus        79 ~l~~~~~~~k~va~fgs~g~~---~~a~~~l~~~l~~~G~~~v~---~~~~~~~~P-------------~---~~dl~~~  136 (159)
T 3fni_A           79 TILGSVNEKQAVGIFETGGGD---DEPIDPLLSKFRNLGLTTAF---PAIRIKQTP-------------T---ENTYKLC  136 (159)
T ss_dssp             HHHHHCCTTSEEEEECCSSSC---BCCHHHHHHHHHHTTCEESS---SCBCCSSCC-------------C---HHHHHHH
T ss_pred             HHHhhcccCCEEEEEEcCCCC---cHHHHHHHHHHHHCCCEEec---CceEEEeCC-------------C---HHHHHHH
Confidence                  234333333344442   21122233344455655321   111110111             1   1123456


Q ss_pred             HHHHHHHHHHHHHhhhhhh
Q 014542          393 AEWARSILNQVRISKLEQA  411 (423)
Q Consensus       393 ~~~l~~vl~~l~~~~~~~~  411 (423)
                      +++.+++.++++...+++-
T Consensus       137 ~~~g~~la~~~~~~~~~~~  155 (159)
T 3fni_A          137 EEAGTDLGQWVTRDRLEHH  155 (159)
T ss_dssp             HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhHHhhc
Confidence            7888888899998888864


No 13 
>1jwq_A N-acetylmuramoyl-L-alanine amidase CWLV; open alpha-beta-alpha, hydrolase; 1.80A {Paenibacillus polymyxa} SCOP: c.56.5.6
Probab=41.37  E-value=33  Score=30.48  Aligned_cols=87  Identities=16%  Similarity=0.143  Sum_probs=48.0

Q ss_pred             HHHHHhhccccCCcEEEEEe--CCCCCHHHHHHHhc--CCcEEEeechhhhhhhcccCCCcEEEEEeeCCcccccccchh
Q 014542          266 TEIFAEECAMVDGCVLKVEQ--SEDLSFCDQVKVMT--GTDVVASPHGAQLTNMLFMDRNSSVMEFFPKGWLELAGVGQY  341 (423)
Q Consensus       266 ~~~l~~~~~~~~G~~v~vv~--~~~ls~~eQv~l~~--~adVlIgvHGAgLTN~lFm~pgs~viEi~P~g~~~~~g~~~~  341 (423)
                      ...|++.+...+|++|...-  -..+++.+-+++.+  +||++|+.|--+..|     +.+.=+|+|-+.. +...+...
T Consensus        34 a~~l~~~L~~~~G~~V~ltR~~D~~~~L~~R~~~an~~~adlfiSiH~Na~~~-----~~~~G~ev~~~~~-~s~~lA~~  107 (179)
T 1jwq_A           34 ALKVESILKQNPKLEVVLTRSDDTFLELKQRVKVAENLKANVFVSIHANSSGS-----SASNGTETYYQRS-ASKAFANV  107 (179)
T ss_dssp             HHHHHHHHHTCTTEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEEEECCSS-----TTCCCEEEEECSG-GGHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEEeCCCCCCCCHHHHHHHHHhhCCCEEEEEccCCCCC-----CCCCeEEEEEECh-HHHHHHHH
Confidence            33444444332487766542  24578888888776  699999999776544     2222345543321 11111223


Q ss_pred             HHHHHHhhcCCeeeeee
Q 014542          342 AHHWMADQSGMRHRGAW  358 (423)
Q Consensus       342 ~Y~~lA~~~Gl~h~~~w  358 (423)
                      .-..+.+..|+...+..
T Consensus       108 i~~~l~~~~g~~~rgvk  124 (179)
T 1jwq_A          108 MHKYFAPATGLTDRGIR  124 (179)
T ss_dssp             HHHHHHHHHCSCEEEEE
T ss_pred             HHHHHHHHcCCCCCCcc
Confidence            44456666677665543


No 14 
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=41.11  E-value=52  Score=29.40  Aligned_cols=46  Identities=17%  Similarity=0.158  Sum_probs=31.7

Q ss_pred             cCHHHHHHHHHhhccccCCcEEEEEeCC-CCCHHHHHHHhcCCcEEEe
Q 014542          260 KNATAVTEIFAEECAMVDGCVLKVEQSE-DLSFCDQVKVMTGTDVVAS  306 (423)
Q Consensus       260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~-~ls~~eQv~l~~~adVlIg  306 (423)
                      .|-..+++++.+.+.. .|.+|+++++. +..+.+.++.+.+||+||=
T Consensus        30 s~~~~l~~~~~~~~~~-~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~   76 (204)
T 2amj_A           30 QLNDTLTEVADGTLRD-LGHDVRIVRADSDYDVKAEVQNFLWADVVIW   76 (204)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCEEEEEESSSCCCHHHHHHHHHHCSEEEE
T ss_pred             cHHHHHHHHHHHHHHH-cCCEEEEEeCCccccHHHHHHHHHhCCEEEE
Confidence            3444555555543332 38899998763 4678899999999998873


No 15 
>1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A*
Probab=40.42  E-value=44  Score=32.54  Aligned_cols=70  Identities=9%  Similarity=0.155  Sum_probs=47.4

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+   ++... +...|..     .|..|.+.....-.+   -+.+.+|||+|+.-|.. +..-=|.+||++||
T Consensus       167 ~vvVIG~s~---iVG~p-~A~lL~~-----~gAtVtv~hs~t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~GavVI  234 (301)
T 1a4i_A          167 HAVVVGRSK---IVGAP-MHDLLLW-----NNATVTTCHSKTAHL---DEEVNKGDILVVATGQPEMVKGEWIKPGAIVI  234 (301)
T ss_dssp             EEEEECCCT---TTHHH-HHHHHHH-----TTCEEEEECTTCSSH---HHHHTTCSEEEECCCCTTCBCGGGSCTTCEEE
T ss_pred             EEEEECCCc---hHHHH-HHHHHHh-----CCCeEEEEECCcccH---HHHhccCCEEEECCCCcccCCHHHcCCCcEEE
Confidence            568998763   22111 3344444     477888876554444   35678999999999875 55555679999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      -+-
T Consensus       235 DVg  237 (301)
T 1a4i_A          235 DCG  237 (301)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            985


No 16 
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=38.66  E-value=45  Score=28.49  Aligned_cols=53  Identities=6%  Similarity=0.139  Sum_probs=36.2

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVA  305 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlI  305 (423)
                      -|+|.|..|     |-+.+++.+.+.+.. .|+++.+++..+.+..+-+.-+.++|.+|
T Consensus         4 ~IvY~S~tG-----nT~~~A~~ia~~l~~-~g~~v~~~~~~~~~~~~~~~~~~~~d~ii   56 (161)
T 3hly_A            4 LIGYLSDYG-----YSDRLSQAIGRGLVK-TGVAVEMVDLRAVDPQELIEAVSSARGIV   56 (161)
T ss_dssp             EEEECTTST-----THHHHHHHHHHHHHH-TTCCEEEEETTTCCHHHHHHHHHHCSEEE
T ss_pred             EEEEECCCh-----HHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHHHHHHHhCCEEE
Confidence            356667654     455555555544432 58888888988888888777788888665


No 17 
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=36.86  E-value=62  Score=30.93  Aligned_cols=60  Identities=15%  Similarity=0.055  Sum_probs=38.5

Q ss_pred             eeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCC------------HHHHHHHhcCCcEEEe
Q 014542          245 IIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLS------------FCDQVKVMTGTDVVAS  306 (423)
Q Consensus       245 ~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls------------~~eQv~l~~~adVlIg  306 (423)
                      ..+|++|.=. .|.=.|-..+++.+.+.+.. .|.+++++++.+++            +.+-++.+..||.||=
T Consensus        58 ~mKILiI~GS-~R~~S~T~~La~~~~~~l~~-~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~  129 (279)
T 2fzv_A           58 PVRILLLYGS-LRARSFSRLAVEEAARLLQF-FGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVW  129 (279)
T ss_dssp             CCEEEEEESC-CSSSCHHHHHHHHHHHHHHH-TTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEE
T ss_pred             CCEEEEEEeC-CCCCCHHHHHHHHHHHHHhh-CCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEE
Confidence            3456777632 23334444455544443322 68899999887776            6677889999998873


No 18 
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=36.63  E-value=77  Score=27.44  Aligned_cols=56  Identities=9%  Similarity=0.035  Sum_probs=38.9

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCC--------------HHHHHHHhcCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLS--------------FCDQVKVMTGTDVVA  305 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls--------------~~eQv~l~~~adVlI  305 (423)
                      +|++|.=. .|.=-|-..+++.+.+.+.  .|.+++++++.+++              +.+-++.+.+||.||
T Consensus         8 kilii~gS-~r~~g~t~~la~~i~~~l~--~g~~v~~~dl~~~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii   77 (193)
T 1rtt_A            8 KVLGISGS-LRSGSYNSAALQEAIGLVP--PGMSIELADISGIPLYNEDVYALGFPPAVERFREQIRAADALL   77 (193)
T ss_dssp             EEEEEESC-CSTTCHHHHHHHHHHTTCC--TTCEEEECCCTTCCCCCHHHHTTCCCHHHHHHHHHHHHCSEEE
T ss_pred             eEEEEECC-CCCCChHHHHHHHHHHhcc--CCCeEEEEeHHHCCCCCccccccCCCHHHHHHHHHHHhCCEEE
Confidence            55666633 2323578889999887665  58899888876654              345567888999887


No 19 
>1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2
Probab=36.42  E-value=54  Score=31.71  Aligned_cols=70  Identities=9%  Similarity=0.127  Sum_probs=47.5

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSSVM  325 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~vi  325 (423)
                      ++++|.|.+   ++.. -+...|..     .|..|.+....+..+.   +.+.+|||+|+.=|+. +..-=|.+||++||
T Consensus       161 ~vvVIG~s~---iVG~-p~A~lL~~-----~gAtVtv~hs~t~~L~---~~~~~ADIVI~Avg~p~lI~~~~vk~GavVI  228 (288)
T 1b0a_A          161 NAVVIGASN---IVGR-PMSMELLL-----AGCTTTVTHRFTKNLR---HHVENADLLIVAVGKPGFIPGDWIKEGAIVI  228 (288)
T ss_dssp             EEEEECCCT---TTHH-HHHHHHHT-----TTCEEEEECSSCSCHH---HHHHHCSEEEECSCCTTCBCTTTSCTTCEEE
T ss_pred             EEEEECCCh---HHHH-HHHHHHHH-----CCCeEEEEeCCchhHH---HHhccCCEEEECCCCcCcCCHHHcCCCcEEE
Confidence            568998763   2211 23444444     4788888876555544   4567899999999876 55444669999999


Q ss_pred             EEe
Q 014542          326 EFF  328 (423)
Q Consensus       326 Ei~  328 (423)
                      -+-
T Consensus       229 DVg  231 (288)
T 1b0a_A          229 DVG  231 (288)
T ss_dssp             ECC
T ss_pred             Ecc
Confidence            885


No 20 
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=35.44  E-value=82  Score=27.64  Aligned_cols=57  Identities=5%  Similarity=0.009  Sum_probs=37.8

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCC-------------HHHHHHHhcCCcEEEe
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLS-------------FCDQVKVMTGTDVVAS  306 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls-------------~~eQv~l~~~adVlIg  306 (423)
                      +|++|.=. .|.=.|-..+++.+.+.+.  .|.+++++++.+++             +.+-++.+.+||.+|=
T Consensus         4 kilii~gS-~r~~s~t~~la~~~~~~~~--~~~~v~~~dl~~lp~~~~~~~~~~~~~~~~~~~~i~~AD~iV~   73 (192)
T 3fvw_A            4 RILFIVGS-FSEGSFNRQLAKKAETIIG--DRAQVSYLSYDRVPFFNQDLETSVHPEVAHAREEVQEADAIWI   73 (192)
T ss_dssp             EEEEEESC-CSTTCHHHHHHHHHHHHHT--TSSEEEECCCSSCCCCCGGGTTSCCHHHHHHHHHHHHCSEEEE
T ss_pred             EEEEEEcC-CCCCCHHHHHHHHHHHhcC--CCCEEEEEeCccCCCCCcccccCCcHHHHHHHHHHHhCCEEEE
Confidence            34565532 3333455667777766554  57889988876665             3567888999998873


No 21 
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=34.73  E-value=50  Score=30.36  Aligned_cols=61  Identities=8%  Similarity=0.061  Sum_probs=36.6

Q ss_pred             eeEEEEEEecC---CCcccCHHHHHHHHHhhccccCCcEEEEEeC-CCCCHHHHHHHhcCCcEEEe
Q 014542          245 IIRLTLLMRRG---SRSFKNATAVTEIFAEECAMVDGCVLKVEQS-EDLSFCDQVKVMTGTDVVAS  306 (423)
Q Consensus       245 ~irv~li~R~~---~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~-~~ls~~eQv~l~~~adVlIg  306 (423)
                      ..+|++|.=.-   .+.=.+-..+++++.+.+.. .|.+|+++++ +...+.+.++.+..||+||=
T Consensus        25 M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~-~g~ev~~~dL~~~~Dv~~~~~~l~~aD~iv~   89 (218)
T 3rpe_A           25 MSNVLIINAMKEFAHSKGALNLTLTNVAADFLRE-SGHQVKITTVDQGYDIESEIENYLWADTIIY   89 (218)
T ss_dssp             CCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHH-TTCCEEEEEGGGCCCHHHHHHHHHHCSEEEE
T ss_pred             CcceEEEEeCCCcccCCChHHHHHHHHHHHHHhh-CCCEEEEEECCCccCHHHHHHHHHhCCEEEE
Confidence            34567776431   11112233344444433322 5888999876 45778888999999998873


No 22 
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=32.26  E-value=84  Score=30.32  Aligned_cols=55  Identities=15%  Similarity=0.157  Sum_probs=38.6

Q ss_pred             eeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEE
Q 014542          245 IIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVA  305 (423)
Q Consensus       245 ~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlI  305 (423)
                      ++-+++.|..|     |-+.+++.+.+.+.. .|+++++++..+.+..+....+.++|.+|
T Consensus       258 k~~i~~~S~~g-----nT~~la~~i~~~l~~-~g~~v~~~~~~~~~~~~~~~~l~~~d~ii  312 (404)
T 2ohh_A          258 RVTVIYDTMHG-----STRKMAHAIAEGAMS-EGVDVRVYCLHEDDRSEIVKDILESGAIA  312 (404)
T ss_dssp             EEEEEECCSSS-----HHHHHHHHHHHHHHT-TTCEEEEEETTTSCHHHHHHHHHTCSEEE
T ss_pred             cEEEEEECCCh-----HHHHHHHHHHHHHHh-CCCeEEEEECCCCCHHHHHHHHHHCCEEE
Confidence            55455555543     555666666554432 58899999998888888888888999876


No 23 
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=27.68  E-value=1.5e+02  Score=28.64  Aligned_cols=63  Identities=10%  Similarity=0.076  Sum_probs=40.6

Q ss_pred             eeEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEe---echhhhh
Q 014542          245 IIRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVAS---PHGAQLT  313 (423)
Q Consensus       245 ~irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIg---vHGAgLT  313 (423)
                      ++-|++.|.+|     |-+.+++.+.+.+.. .|++++++...+..+.+....+.++|.+|=   +++.+++
T Consensus       258 kv~iiy~S~~G-----nT~~la~~i~~~l~~-~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~~~~~  323 (414)
T 2q9u_A          258 KVTVVLDSMYG-----TTHRMALALLDGARS-TGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLNNTMM  323 (414)
T ss_dssp             EEEEEECCSSS-----HHHHHHHHHHHHHHH-TTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBTTBCC
T ss_pred             eEEEEEECCCc-----hHHHHHHHHHHHHHh-CCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccCcCch
Confidence            45455556543     445555555544332 578898888888888877888889998773   3554443


No 24 
>2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A
Probab=26.73  E-value=91  Score=30.02  Aligned_cols=70  Identities=9%  Similarity=0.143  Sum_probs=46.8

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccC--CcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhh-hhhhcccCCCcE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVD--GCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQ-LTNMLFMDRNSS  323 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~--G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAg-LTN~lFm~pgs~  323 (423)
                      ++++|.|.+   ++.. -+...|..     .  |..|.+....+-.+   -+.+.+|||+|+.=|+. +-.-=|.+||++
T Consensus       160 ~vvVvG~s~---iVG~-p~A~lL~~-----~g~~atVtv~h~~t~~L---~~~~~~ADIVI~Avg~p~~I~~~~vk~Gav  227 (281)
T 2c2x_A          160 HVVVIGRGV---TVGR-PLGLLLTR-----RSENATVTLCHTGTRDL---PALTRQADIVVAAVGVAHLLTADMVRPGAA  227 (281)
T ss_dssp             EEEEECCCT---TTHH-HHHHHHTS-----TTTCCEEEEECTTCSCH---HHHHTTCSEEEECSCCTTCBCGGGSCTTCE
T ss_pred             EEEEECCCc---HHHH-HHHHHHhc-----CCCCCEEEEEECchhHH---HHHHhhCCEEEECCCCCcccCHHHcCCCcE
Confidence            568998764   2211 13334443     3  67788776554333   45678999999999976 555556799999


Q ss_pred             EEEEe
Q 014542          324 VMEFF  328 (423)
Q Consensus       324 viEi~  328 (423)
                      ||-+-
T Consensus       228 VIDVg  232 (281)
T 2c2x_A          228 VIDVG  232 (281)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            99885


No 25 
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=26.38  E-value=81  Score=27.55  Aligned_cols=67  Identities=12%  Similarity=0.027  Sum_probs=39.2

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhh-ccccCCcEEEEEeCCCCCH-------------HHHHHHhcCCcEEEe---ech
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEE-CAMVDGCVLKVEQSEDLSF-------------CDQVKVMTGTDVVAS---PHG  309 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~-~~~~~G~~v~vv~~~~ls~-------------~eQv~l~~~adVlIg---vHG  309 (423)
                      +|++|.= ..|+=-|-..+++.+.+. +.. .|.++++++..++++             .+.++.+.++|.+|=   ++.
T Consensus         4 kilii~g-S~r~~g~t~~la~~i~~~~l~~-~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~   81 (197)
T 2vzf_A            4 SIVAISG-SPSRNSTTAKLAEYALAHVLAR-SDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK   81 (197)
T ss_dssp             EEEEEEC-CSSTTCHHHHHHHHHHHHHHHH-SSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT
T ss_pred             eEEEEEC-CCCCCChHHHHHHHHHHHHHHH-CCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccC
Confidence            3455542 234344566666666554 432 488899888877653             344567888998773   344


Q ss_pred             hhhhhh
Q 014542          310 AQLTNM  315 (423)
Q Consensus       310 AgLTN~  315 (423)
                      .+++-.
T Consensus        82 ~~~p~~   87 (197)
T 2vzf_A           82 ASYTGL   87 (197)
T ss_dssp             TBCCHH
T ss_pred             CCCCHH
Confidence            444433


No 26 
>3qay_A Endolysin; amidase A/B fold, lyase; 2.00A {Clostridium phage PHICD27}
Probab=25.92  E-value=1e+02  Score=27.21  Aligned_cols=36  Identities=14%  Similarity=0.125  Sum_probs=24.0

Q ss_pred             CCcEEEEEeC--CC-C----CHHHHHHHh--cCCcEEEeechhhh
Q 014542          277 DGCVLKVEQS--ED-L----SFCDQVKVM--TGTDVVASPHGAQL  312 (423)
Q Consensus       277 ~G~~v~vv~~--~~-l----s~~eQv~l~--~~adVlIgvHGAgL  312 (423)
                      .|++|.++..  ++ .    ++.+-+++.  .+||++|+.|-.+.
T Consensus        45 ~G~~V~v~ltR~d~~~~~~~~L~~R~~~An~~~aDlfISIH~Na~   89 (180)
T 3qay_A           45 EGHKVDVIICPEKQFKTKNEEKSYKIPRVNSGGYDLLIELHLNAS   89 (180)
T ss_dssp             TTCEEEEECCCSSCCSSTTHHHHHHHHHHHHSCCSEEEEEEEECS
T ss_pred             cCCcceEEECCCCCccccccCHHHHHHHHHhcCCCEEEEeeeCCC
Confidence            5888755421  11 2    377767666  46999999997664


No 27 
>3ne8_A N-acetylmuramoyl-L-alanine amidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.24A {Bartonella henselae}
Probab=25.49  E-value=91  Score=28.89  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=26.8

Q ss_pred             CcEEEEEe--CCCCCHHHHHHHhc--CCcEEEeechhhhhh
Q 014542          278 GCVLKVEQ--SEDLSFCDQVKVMT--GTDVVASPHGAQLTN  314 (423)
Q Consensus       278 G~~v~vv~--~~~ls~~eQv~l~~--~adVlIgvHGAgLTN  314 (423)
                      |++|...-  -..+++.+-+++.+  +||++|+.|-.+..+
T Consensus        48 ~~~V~~tR~~D~~~~l~~R~~~An~~~adlfiSiH~Na~~~   88 (234)
T 3ne8_A           48 HTIVALTRDSDIFLRLSERVKKAQEFDADLFISIHADTIDV   88 (234)
T ss_dssp             SEEEEESCSSSCCCCHHHHHHHHHHTTCSEEEEEECCCCSC
T ss_pred             CcEEEEeCCCCCcCCHHHHHHHHHhhCCCEEEEEecCCCCC
Confidence            37766542  24578888888776  799999999776554


No 28 
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=24.76  E-value=80  Score=28.52  Aligned_cols=63  Identities=10%  Similarity=0.052  Sum_probs=44.8

Q ss_pred             EEEEEEecCC--CcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhh
Q 014542          247 RLTLLMRRGS--RSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTN  314 (423)
Q Consensus       247 rv~li~R~~~--R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN  314 (423)
                      ||++|.=...  ..=.|.+.+.+++++     .|+++.++...+.+..+-.+.+.+||.|+=+-|+..+=
T Consensus        29 ~i~~Ip~As~~~~~~~~~~s~~~a~~~-----lG~~v~~~~i~~~~~~~~~~~l~~ad~I~l~GG~~~~l   93 (206)
T 3l4e_A           29 TVTFIPTASTVEEVTFYVEAGKKALES-----LGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFL   93 (206)
T ss_dssp             EEEEECGGGGGCSCCHHHHHHHHHHHH-----TTCEEEECCTTTSCHHHHHHHHHHSSEEEECCSCHHHH
T ss_pred             EEEEECCCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEEecCCChHHHHHHHHhCCEEEECCCCHHHH
Confidence            5588864321  122366788888887     69998888766667777778899999999776766543


No 29 
>3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B*
Probab=24.07  E-value=55  Score=31.10  Aligned_cols=82  Identities=21%  Similarity=0.225  Sum_probs=47.1

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeechhhhhhh------cccCC
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHGAQLTNM------LFMDR  320 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHGAgLTN~------lFm~p  320 (423)
                      +|++++|+..|    .+++.+.+...     | .+.....+++.        .++||||..-++|+..-      =+++|
T Consensus       152 ~v~v~~R~~~~----a~~la~~~~~~-----~-~~~~~~~~~l~--------~~aDiIInaTp~gm~~~~~~l~~~~l~~  213 (281)
T 3o8q_A          152 SITVTNRTFAK----AEQLAELVAAY-----G-EVKAQAFEQLK--------QSYDVIINSTSASLDGELPAIDPVIFSS  213 (281)
T ss_dssp             EEEEEESSHHH----HHHHHHHHGGG-----S-CEEEEEGGGCC--------SCEEEEEECSCCCC----CSCCGGGEEE
T ss_pred             eEEEEECCHHH----HHHHHHHhhcc-----C-CeeEeeHHHhc--------CCCCEEEEcCcCCCCCCCCCCCHHHhCc
Confidence            44777765333    34555555431     2 34455544432        68999998888876431      23567


Q ss_pred             CcEEEEEeeCCcccccccchhHHHHHHhhcCCe
Q 014542          321 NSSVMEFFPKGWLELAGVGQYAHHWMADQSGMR  353 (423)
Q Consensus       321 gs~viEi~P~g~~~~~g~~~~~Y~~lA~~~Gl~  353 (423)
                      +++|+.+.-.-. +      ..+-..|+..|..
T Consensus       214 ~~~V~DlvY~P~-~------T~ll~~A~~~G~~  239 (281)
T 3o8q_A          214 RSVCYDMMYGKG-Y------TVFNQWARQHGCA  239 (281)
T ss_dssp             EEEEEESCCCSS-C------CHHHHHHHHTTCS
T ss_pred             CCEEEEecCCCc-c------CHHHHHHHHCCCC
Confidence            888888862111 1      2355678888875


No 30 
>3u7q_A Nitrogenase molybdenum-iron protein alpha chain; multiple rossmann fold domains, reductase, nitrogen fixing, oxidoreductase; HET: HCA ICS 1CL CLF; 1.00A {Azotobacter vinelandii} SCOP: c.92.2.3 PDB: 1g21_A* 1g20_A* 1fp4_A* 1m1n_A* 1l5h_A* 1m1y_A* 1m34_A* 1n2c_A* 2afh_A* 2afi_A* 2afk_A* 2min_A* 3min_A* 3k1a_A* 1h1l_A* 1qgu_A* 1qh1_A* 1qh8_A*
Probab=23.85  E-value=90  Score=32.13  Aligned_cols=82  Identities=13%  Similarity=-0.017  Sum_probs=59.4

Q ss_pred             cCHHHHHHHHHhhccccCCcEEEEEeCCCCCHHHHHHHhcCCcEEEeech-hhhhhhcccCC--CcEEEEEeeCCccccc
Q 014542          260 KNATAVTEIFAEECAMVDGCVLKVEQSEDLSFCDQVKVMTGTDVVASPHG-AQLTNMLFMDR--NSSVMEFFPKGWLELA  336 (423)
Q Consensus       260 ~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls~~eQv~l~~~adVlIgvHG-AgLTN~lFm~p--gs~viEi~P~g~~~~~  336 (423)
                      -|..|+.+.|++     .|+++..+.....++ ++++-+.+|++-|.++. ++..-.-+|..  |.-.+++-|.|.-.. 
T Consensus       233 gD~~eik~lL~~-----~Gi~v~~~~~g~~t~-~ei~~~~~A~~niv~~~~~~~~~A~~Le~~~GiP~i~~~p~G~~~T-  305 (492)
T 3u7q_A          233 GDAWSSRILLEE-----MGLRCVAQWSGDGSI-SEIELTPKVKLNLVHCYRSMNYISRHMEEKYGIPWMEYNFFGPTKT-  305 (492)
T ss_dssp             TTTHHHHHHHHH-----TTCEEEEEEETTCCH-HHHHHGGGCSEEEESCHHHHHHHHHHHHHHHCCCEEECCCSSHHHH-
T ss_pred             hhHHHHHHHHHH-----CCCeEEEEeCCCCCH-HHHHhhhcCcEEEEEChHHHHHHHHHHHHHhCCceEecCccCHHHH-
Confidence            457889999987     698888777777775 77888999999998763 55555556643  677888777776433 


Q ss_pred             ccchhHHHHHHhhcC
Q 014542          337 GVGQYAHHWMADQSG  351 (423)
Q Consensus       337 g~~~~~Y~~lA~~~G  351 (423)
                         ..+++.+|+..|
T Consensus       306 ---~~~L~~ia~~~g  317 (492)
T 3u7q_A          306 ---IESLRAIAAKFD  317 (492)
T ss_dssp             ---HHHHHHHHTTSC
T ss_pred             ---HHHHHHHHHHhC
Confidence               235677777777


No 31 
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=23.40  E-value=1.2e+02  Score=27.02  Aligned_cols=58  Identities=14%  Similarity=0.211  Sum_probs=38.6

Q ss_pred             eEEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEE-EEeCCCCC--------------HHHHHHHhcCCcEEEe
Q 014542          246 IRLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLK-VEQSEDLS--------------FCDQVKVMTGTDVVAS  306 (423)
Q Consensus       246 irv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~-vv~~~~ls--------------~~eQv~l~~~adVlIg  306 (423)
                      .+|++|.=. .|.=.|-..+++.+.+.+.  .|.+++ ++++.+++              +.+-++.+.+||.+|=
T Consensus         7 mkIl~I~GS-~r~~s~t~~la~~~~~~~~--~g~~v~~~idL~~lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi   79 (199)
T 4hs4_A            7 LHFVTLLGS-LRKASFNAAVARALPEIAP--EGIAITPLGSIGTFPHYSQDVQEEGFPAPVLTMAQQIATADAVVI   79 (199)
T ss_dssp             EEEEEEECC-CSTTCHHHHHHHHHHHHCC--TTEEEEECCCGGGSCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEE
T ss_pred             CEEEEEEcC-CCCCChHHHHHHHHHHHcc--CCCEEEEEEehhhcCCCCccccccCCCHHHHHHHHHHHhCCEEEE
Confidence            466777643 3444556778887777654  588888 77664454              3456778899998874


No 32 
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=22.75  E-value=1.8e+02  Score=25.48  Aligned_cols=56  Identities=4%  Similarity=-0.016  Sum_probs=34.8

Q ss_pred             EEEEEEecCCCcccCHHHHHHHHHhhccccCCcEEEEEeCCCCC---------------------HHHHHHHhcCCcEEE
Q 014542          247 RLTLLMRRGSRSFKNATAVTEIFAEECAMVDGCVLKVEQSEDLS---------------------FCDQVKVMTGTDVVA  305 (423)
Q Consensus       247 rv~li~R~~~R~i~Ne~ev~~~l~~~~~~~~G~~v~vv~~~~ls---------------------~~eQv~l~~~adVlI  305 (423)
                      +|++|.=. .|.=.|-..+++.+.+.+  ..|.+|+++++.++.                     +.+-++.+.+||+||
T Consensus         2 kiLiI~gs-pr~~s~t~~l~~~~~~~~--~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV   78 (196)
T 3lcm_A            2 KILIVYTH-PNPTSFNAEILKQVQTNL--SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLI   78 (196)
T ss_dssp             EEEEEECC-SCTTSHHHHHHHHHHHHS--CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEE
T ss_pred             EEEEEEeC-CCCCChHHHHHHHHHHHh--cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEE
Confidence            34555532 222234566777777655  268899988765432                     356677788888776


Done!