Query 014545
Match_columns 423
No_of_seqs 157 out of 242
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 13:31:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014545.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014545hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3j21_g 50S ribosomal protein L 88.3 0.086 2.9E-06 38.9 -0.1 34 293-334 13-46 (51)
2 1yuz_A Nigerythrin; rubrythrin 82.4 0.59 2E-05 43.3 2.4 41 274-324 153-194 (202)
3 1lko_A Rubrerythrin all-iron(I 64.9 3.2 0.00011 37.8 2.5 44 274-324 132-179 (191)
4 3pwf_A Rubrerythrin; non heme 64.0 6.1 0.00021 35.4 4.2 43 274-324 117-161 (170)
5 3b60_A Lipid A export ATP-bind 63.6 85 0.0029 32.6 13.5 35 136-170 198-232 (582)
6 1dl6_A Transcription factor II 61.9 3.8 0.00013 30.5 2.0 35 293-330 10-44 (58)
7 3qf4_B Uncharacterized ABC tra 61.0 57 0.002 34.2 11.7 36 135-170 209-244 (598)
8 3h0g_L DNA-directed RNA polyme 60.4 3.3 0.00011 31.7 1.4 31 292-327 19-49 (63)
9 4ayb_P DNA-directed RNA polyme 56.1 4.7 0.00016 29.2 1.5 29 296-326 5-33 (48)
10 3b5x_A Lipid A export ATP-bind 55.7 69 0.0024 33.3 11.2 36 135-170 197-232 (582)
11 2k1p_A Zinc finger RAN-binding 54.3 4.7 0.00016 26.7 1.3 18 315-332 5-22 (33)
12 2yl4_A ATP-binding cassette SU 53.0 81 0.0028 32.9 11.2 34 137-170 196-229 (595)
13 2qkd_A Zinc finger protein ZPR 52.3 2.9 0.0001 42.7 -0.0 41 293-334 11-59 (404)
14 1twf_L ABC10-alpha, DNA-direct 52.3 9.8 0.00034 29.5 3.0 34 291-329 25-60 (70)
15 1qyp_A RNA polymerase II; tran 50.9 7.8 0.00027 28.3 2.1 32 294-325 15-52 (57)
16 2lk0_A RNA-binding protein 5; 50.4 5.6 0.00019 26.1 1.1 17 315-331 4-20 (32)
17 2k4x_A 30S ribosomal protein S 46.8 15 0.00052 27.0 3.1 35 287-325 11-45 (55)
18 4rxn_A Rubredoxin; electron tr 45.5 7 0.00024 28.9 1.1 29 296-324 5-44 (54)
19 2qkd_A Zinc finger protein ZPR 45.0 4.8 0.00017 41.1 0.2 44 291-335 217-268 (404)
20 2yrc_A Protein transport prote 43.2 12 0.00041 28.0 2.1 37 293-330 8-47 (59)
21 3qf4_A ABC transporter, ATP-bi 43.2 1.8E+02 0.0061 30.3 11.9 34 136-169 196-229 (587)
22 4hkr_A Calcium release-activat 42.2 2.2E+02 0.0074 26.5 10.9 20 109-129 152-171 (214)
23 1fp0_A KAP-1 corepressor; PHD 39.8 20 0.00069 29.0 3.1 41 294-334 37-81 (88)
24 1nj3_A NPL4; NZF domain, rubre 39.4 14 0.00048 23.7 1.7 17 315-331 5-21 (31)
25 3eff_K Voltage-gated potassium 38.2 1.4E+02 0.0048 24.8 8.5 8 162-169 121-128 (139)
26 1tfi_A Transcriptional elongat 38.1 14 0.00047 26.7 1.7 31 294-324 9-45 (50)
27 3j20_Y 30S ribosomal protein S 37.0 15 0.00053 26.5 1.8 31 291-325 16-46 (50)
28 3h0g_I DNA-directed RNA polyme 35.9 21 0.00072 29.7 2.7 38 288-325 65-109 (113)
29 3qt1_I DNA-directed RNA polyme 35.5 14 0.00049 31.9 1.7 32 295-328 25-58 (133)
30 4a82_A Cystic fibrosis transme 35.0 1.7E+02 0.0057 30.4 10.1 35 136-170 194-228 (578)
31 2lcq_A Putative toxin VAPC6; P 34.8 13 0.00044 32.5 1.3 28 292-325 130-157 (165)
32 2c6a_A Ubiquitin-protein ligas 34.7 15 0.00053 26.3 1.4 16 315-330 12-27 (46)
33 1weu_A Inhibitor of growth fam 34.7 25 0.00085 28.5 2.9 34 295-328 50-88 (91)
34 4hkr_A Calcium release-activat 34.6 1.8E+02 0.0063 27.0 9.0 16 106-121 154-170 (214)
35 1vq8_Z 50S ribosomal protein L 31.8 12 0.00041 29.9 0.5 27 295-325 28-54 (83)
36 1pcx_A Protein transport prote 31.3 16 0.00056 40.3 1.6 35 294-329 112-147 (810)
37 2con_A RUH-035 protein, NIN on 31.2 14 0.00048 29.4 0.8 27 291-324 12-38 (79)
38 3po3_S Transcription elongatio 30.7 21 0.00072 32.2 2.0 31 294-324 137-173 (178)
39 1m2v_B SEC24, protein transpor 30.5 17 0.00059 40.8 1.7 35 294-329 228-263 (926)
40 2j9u_B VPS36, vacuolar protein 30.4 17 0.00057 28.8 1.1 28 303-332 6-33 (76)
41 3h0g_I DNA-directed RNA polyme 29.9 24 0.00082 29.4 2.1 33 295-329 5-39 (113)
42 3hd7_A Vesicle-associated memb 29.6 1.7E+02 0.0059 23.2 7.1 7 45-51 35-41 (91)
43 2cr8_A MDM4 protein; ZF-ranbp 29.1 21 0.00071 26.3 1.3 14 316-329 11-24 (53)
44 1pft_A TFIIB, PFTFIIBN; N-term 28.4 32 0.0011 24.1 2.3 34 294-330 5-38 (50)
45 1twf_I B12.6, DNA-directed RNA 27.8 20 0.00069 30.2 1.3 33 295-329 5-39 (122)
46 3a9j_C Mitogen-activated prote 27.8 22 0.00077 23.2 1.2 16 315-330 7-22 (34)
47 1n0z_A ZNF265; zinc finger, RN 27.0 64 0.0022 22.6 3.6 19 314-332 12-32 (45)
48 2d9g_A YY1-associated factor 2 26.9 38 0.0013 24.7 2.5 18 314-331 9-26 (53)
49 3cng_A Nudix hydrolase; struct 26.8 25 0.00087 30.7 1.8 29 296-324 5-33 (189)
50 1pqv_S STP-alpha, transcriptio 26.2 25 0.00087 34.3 1.9 31 294-324 268-304 (309)
51 1twf_I B12.6, DNA-directed RNA 26.0 37 0.0013 28.6 2.6 34 292-325 70-109 (122)
52 1s24_A Rubredoxin 2; electron 24.7 24 0.00082 28.5 1.1 31 294-324 35-76 (87)
53 2d74_B Translation initiation 24.3 39 0.0013 29.8 2.5 39 295-334 105-143 (148)
54 1fjk_A Cardiac phospholamban; 24.3 1E+02 0.0036 22.0 4.2 26 64-89 23-48 (52)
55 1m2o_A SEC23, protein transpor 24.0 28 0.00095 38.1 1.8 36 294-330 53-91 (768)
56 2cly_A ATP synthase B chain, m 24.0 62 0.0021 30.1 4.0 38 120-157 72-109 (214)
57 3b08_B Ranbp-type and C3HC4-ty 23.9 27 0.00093 26.7 1.2 18 315-332 7-24 (64)
58 3eh1_A Protein transport prote 23.9 31 0.0011 37.7 2.2 35 294-330 85-120 (751)
59 2k5c_A Uncharacterized protein 23.7 17 0.00058 29.3 0.1 13 312-324 47-59 (95)
60 4fyy_B Aspartate carbamoyltran 23.6 44 0.0015 29.7 2.7 30 295-324 107-143 (153)
61 2crc_A Ubiquitin conjugating e 22.8 26 0.0009 25.6 0.9 18 315-332 9-26 (52)
62 2fzt_A Hypothetical protein TM 22.2 72 0.0025 25.1 3.3 16 137-152 22-37 (79)
63 4bbr_M Transcription initiatio 21.6 25 0.00086 34.7 0.8 35 294-329 21-55 (345)
64 3teq_A Stromal interaction mol 21.3 58 0.002 27.0 2.8 53 16-69 38-90 (101)
65 2nut_A Protein transport prote 21.0 33 0.0011 37.6 1.6 36 294-330 62-100 (769)
66 4f4c_A Multidrug resistance pr 20.7 3.9E+02 0.013 30.9 10.5 35 135-169 268-302 (1321)
67 2ayj_A 50S ribosomal protein L 20.4 42 0.0014 25.0 1.6 10 295-304 20-29 (56)
68 3efo_B SEC24 related gene fami 20.3 31 0.001 37.9 1.2 36 294-330 98-134 (770)
No 1
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=88.28 E-value=0.086 Score=38.93 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=26.7
Q ss_pred ceeeccccccccCccccCCCCceEEEcCCCCCccCCCCCCCC
Q 014545 293 YALICGNCHMHNGLARKEDFPYITYYCPHCNALNRPKESEGH 334 (423)
Q Consensus 293 yALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~~~~~~~~ 334 (423)
-.-||.+|..+|| ...|.|..||+-|-..+.++.
T Consensus 13 ~k~iCpkC~a~~~--------~gaw~CrKCG~~~lr~k~k~~ 46 (51)
T 3j21_g 13 KKYVCLRCGATNP--------WGAKKCRKCGYKRLRPKAKEP 46 (51)
T ss_dssp SEEECTTTCCEEC--------TTCSSCSSSSSCCCEEECCCC
T ss_pred CCccCCCCCCcCC--------CCceecCCCCCcccccccccc
Confidence 4589999999955 478999999999876665543
No 2
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=82.36 E-value=0.59 Score=43.28 Aligned_cols=41 Identities=20% Similarity=0.293 Sum_probs=28.7
Q ss_pred CcHHHHHHHHHhcCCCCCcceeeccccc-cccCccccCCCCceEEEcCCCCC
Q 014545 274 GGWIARIAAILVGDDPSQSYALICGNCH-MHNGLARKEDFPYITYYCPHCNA 324 (423)
Q Consensus 274 r~W~DRIlD~LlGddpt~ryALIC~~C~-~HNGlA~~ee~e~i~yrC~~Cg~ 324 (423)
-.||.+++|.|-.++.. ---+|..|. .|.|-+| |+||-||+
T Consensus 153 ~~~~~~ll~~l~~~~~~--~~~~C~~CG~i~~g~~p--------~~CP~C~~ 194 (202)
T 1yuz_A 153 AERYLAAYNDIDAPDDD--KFHLCPICGYIHKGEDF--------EKCPICFR 194 (202)
T ss_dssp HHHHHHHHHTTTCCCSC--CEEECSSSCCEEESSCC--------SBCTTTCC
T ss_pred HHHHHHHHHHHhcCCCC--cEEEECCCCCEEcCcCC--------CCCCCCCC
Confidence 35888888887655332 357899995 4577222 89999996
No 3
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=64.88 E-value=3.2 Score=37.81 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=28.4
Q ss_pred CcHHHHHHHHHhcCCCC---Ccceeeccccccc-cCccccCCCCceEEEcCCCCC
Q 014545 274 GGWIARIAAILVGDDPS---QSYALICGNCHMH-NGLARKEDFPYITYYCPHCNA 324 (423)
Q Consensus 274 r~W~DRIlD~LlGddpt---~ryALIC~~C~~H-NGlA~~ee~e~i~yrC~~Cg~ 324 (423)
-.||.++++.|-.+..- ..-.-+|..|... .|--+|+ +||.||+
T Consensus 132 e~~~~~~l~~l~~~~~~~~~~~~~~~C~~CG~~~~g~~~p~-------~CP~C~~ 179 (191)
T 1lko_A 132 EKRFLDFARNIKEGRVFLREQATKWRCRNCGYVHEGTGAPE-------LCPACAH 179 (191)
T ss_dssp HHHHHHHHHHHHHTCSSEEEEEEEEEETTTCCEEEEEECCS-------BCTTTCC
T ss_pred HHHHHHHHHhhhcccccccCCCceEEECCCCCEeeCCCCCC-------CCCCCcC
Confidence 46889999988654322 1235789999543 4432332 8999996
No 4
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=63.96 E-value=6.1 Score=35.44 Aligned_cols=43 Identities=21% Similarity=0.420 Sum_probs=27.6
Q ss_pred CcHHHHHHHHHhcCCC-CCcceeecccccc-ccCccccCCCCceEEEcCCCCC
Q 014545 274 GGWIARIAAILVGDDP-SQSYALICGNCHM-HNGLARKEDFPYITYYCPHCNA 324 (423)
Q Consensus 274 r~W~DRIlD~LlGddp-t~ryALIC~~C~~-HNGlA~~ee~e~i~yrC~~Cg~ 324 (423)
..||.++++.|-.+.. ...---+|..|.. |.| +.+. +||-||+
T Consensus 117 ~~~~~~~l~~l~~~~~~~~~~~~~C~~CG~i~~~-----~~p~---~CP~Cg~ 161 (170)
T 3pwf_A 117 AELYRKAKEKAEKGEDIEIKKVYICPICGYTAVD-----EAPE---YCPVCGA 161 (170)
T ss_dssp HHHHHHHHHHHTTTCCCCCSCEEECTTTCCEEES-----CCCS---BCTTTCC
T ss_pred HHHHHHHHHHHhcCCcCCCCCeeEeCCCCCeeCC-----CCCC---CCCCCCC
Confidence 4699999999854421 1223457999976 343 2222 8999985
No 5
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=63.62 E-value=85 Score=32.65 Aligned_cols=35 Identities=14% Similarity=0.203 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcCC
Q 014545 136 KTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (423)
Q Consensus 136 ~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd~ 170 (423)
+...++.....+.+.-.+.-.-|......+++|+.
T Consensus 198 ~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b60_A 198 NTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK 232 (582)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHH
Confidence 33444444444444444444455555555555553
No 6
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=61.93 E-value=3.8 Score=30.50 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=26.0
Q ss_pred ceeeccccccccCccccCCCCceEEEcCCCCCccCCCC
Q 014545 293 YALICGNCHMHNGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 293 yALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
-.+.|..|...+ ++ .+++-+.++|..||..-..+.
T Consensus 10 ~~~~Cp~C~~~~-lv--~D~~~ge~vC~~CGlVl~e~~ 44 (58)
T 1dl6_A 10 PRVTCPNHPDAI-LV--EDYRAGDMICPECGLVVGDRV 44 (58)
T ss_dssp SCCSBTTBSSSC-CE--ECSSSCCEECTTTCCEECCSC
T ss_pred ccccCcCCCCCc-ee--EeCCCCeEEeCCCCCEEeccc
Confidence 346899998866 33 366668899999998766543
No 7
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=60.97 E-value=57 Score=34.16 Aligned_cols=36 Identities=17% Similarity=0.255 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcCC
Q 014545 135 QKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (423)
Q Consensus 135 e~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd~ 170 (423)
.+...++.....+.+.-++.-.-|...+...++|+.
T Consensus 209 ~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 244 (598)
T 3qf4_B 209 QRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDR 244 (598)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHH
Confidence 344555555555555555555556666666666654
No 8
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=60.38 E-value=3.3 Score=31.70 Aligned_cols=31 Identities=16% Similarity=0.441 Sum_probs=22.9
Q ss_pred cceeeccccccccCccccCCCCceEEEcCCCCCccC
Q 014545 292 SYALICGNCHMHNGLARKEDFPYITYYCPHCNALNR 327 (423)
Q Consensus 292 ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~ 327 (423)
...-||..|..-|-+-. .-.-||++||+.--
T Consensus 19 ~v~Y~C~~Cg~~~~l~~-----~~~iRC~~CG~RIL 49 (63)
T 3h0g_L 19 TMIYLCADCGARNTIQA-----KEVIRCRECGHRVM 49 (63)
T ss_dssp CCCCBCSSSCCBCCCCS-----SSCCCCSSSCCCCC
T ss_pred CeEEECCCCCCeeecCC-----CCceECCCCCcEEE
Confidence 35589999999888653 23469999998643
No 9
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=56.06 E-value=4.7 Score=29.19 Aligned_cols=29 Identities=24% Similarity=0.487 Sum_probs=18.0
Q ss_pred eccccccccCccccCCCCceEEEcCCCCCcc
Q 014545 296 ICGNCHMHNGLARKEDFPYITYYCPHCNALN 326 (423)
Q Consensus 296 IC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN 326 (423)
.|-+|...-...-.+-.+ .-+|||||+--
T Consensus 5 ~C~rCg~~fs~~el~~lP--~IrCpyCGyri 33 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLP--GVRCPYCGYKI 33 (48)
T ss_dssp CCCCTTTTCCCCCSCCCS--SSCCTTTCCSC
T ss_pred EeeccCCCccHHHHhhCC--CcccCccCcEE
Confidence 577777665554443322 34899999853
No 10
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=55.72 E-value=69 Score=33.33 Aligned_cols=36 Identities=14% Similarity=0.172 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcCC
Q 014545 135 QKTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (423)
Q Consensus 135 e~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd~ 170 (423)
.+...++.....+.+.-.+.-.-|...+...++|+.
T Consensus 197 ~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~ 232 (582)
T 3b5x_A 197 QTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDK 232 (582)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHH
Confidence 344455555555555555555556666666666654
No 11
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=54.27 E-value=4.7 Score=26.67 Aligned_cols=18 Identities=28% Similarity=0.658 Sum_probs=14.6
Q ss_pred eEEEcCCCCCccCCCCCC
Q 014545 315 ITYYCPHCNALNRPKESE 332 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~~~ 332 (423)
+-|.|+.|+++|=++...
T Consensus 5 gDW~C~~C~~~Nfa~R~~ 22 (33)
T 2k1p_A 5 NDWQCKTCSNVNWARRSE 22 (33)
T ss_dssp SSCBCSSSCCBCCTTCSB
T ss_pred CCcccCCCCCcccccccc
Confidence 458999999999887653
No 12
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=53.04 E-value=81 Score=32.89 Aligned_cols=34 Identities=12% Similarity=0.248 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHHHHHhcCC
Q 014545 137 TLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (423)
Q Consensus 137 kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd~ 170 (423)
...++.....+.+.-++.-.-|......+++|+.
T Consensus 196 ~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 229 (595)
T 2yl4_A 196 SLAQATQLAEERIGNVRTVRAFGKEMTEIEKYAS 229 (595)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHH
Confidence 3444444444444444444445555555555543
No 13
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=52.29 E-value=2.9 Score=42.71 Aligned_cols=41 Identities=29% Similarity=0.583 Sum_probs=30.2
Q ss_pred ceeeccccccccCcccc--------CCCCceEEEcCCCCCccCCCCCCCC
Q 014545 293 YALICGNCHMHNGLARK--------EDFPYITYYCPHCNALNRPKESEGH 334 (423)
Q Consensus 293 yALIC~~C~~HNGlA~~--------ee~e~i~yrC~~Cg~lN~~~~~~~~ 334 (423)
..-.|.+|+ .||+..- .|.-...|.|++||+.|-.-+..+.
T Consensus 11 ~~s~Cp~C~-~~g~t~~~~~~IP~F~eVii~Sf~C~~CGyrn~ev~~~g~ 59 (404)
T 2qkd_A 11 IESLCMNCY-RNGTTRLLLTKIPFFREIIVSSFSCEHCGWNNTEIQSAGR 59 (404)
T ss_dssp CEEECTTTS-SEEEEEEEEEEETTTEEEEEEEEECTTTCCEEEEEEEEES
T ss_pred ccccCCCCC-CCceEEEEEEcCCCCceEEEEEEECCCCCCchheeeECcc
Confidence 456799999 8888663 1223468999999999987665444
No 14
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=52.27 E-value=9.8 Score=29.51 Aligned_cols=34 Identities=26% Similarity=0.658 Sum_probs=23.8
Q ss_pred CcceeeccccccccCccccCCCCceEEEcCCCCC--ccCCC
Q 014545 291 QSYALICGNCHMHNGLARKEDFPYITYYCPHCNA--LNRPK 329 (423)
Q Consensus 291 ~ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~--lN~~~ 329 (423)
+.+--||..|...|-+-.. + .-+|++||+ |...|
T Consensus 25 ~~v~Y~C~~CG~~~e~~~~-d----~irCp~CG~RILyK~R 60 (70)
T 1twf_L 25 ATLKYICAECSSKLSLSRT-D----AVRCKDCGHRILLKAR 60 (70)
T ss_dssp CCCCEECSSSCCEECCCTT-S----TTCCSSSCCCCCBCCC
T ss_pred ceEEEECCCCCCcceeCCC-C----CccCCCCCceEeEecC
Confidence 4677899999998866422 2 228999998 44443
No 15
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=50.92 E-value=7.8 Score=28.30 Aligned_cols=32 Identities=19% Similarity=0.471 Sum_probs=22.8
Q ss_pred eeeccccccccCccc------cCCCCceEEEcCCCCCc
Q 014545 294 ALICGNCHMHNGLAR------KEDFPYITYYCPHCNAL 325 (423)
Q Consensus 294 ALIC~~C~~HNGlA~------~ee~e~i~yrC~~Cg~l 325 (423)
.+.|.+|..+.-... ..|...+-|+|..||+.
T Consensus 15 ~~~Cp~Cg~~~~~~~q~Q~rsadep~T~fy~C~~Cg~~ 52 (57)
T 1qyp_A 15 KITCPKCGNDTAYWWEMQTRAGDEPSTIFYKCTKCGHT 52 (57)
T ss_dssp ECCCTTTCCSEEEEEEECCSSSSCSSEEEEEESSSCCE
T ss_pred EeECCCCCCCEEEEEEeecccCCCCCcEEEEcCCCCCE
Confidence 477999997544222 23666788999999964
No 16
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=50.36 E-value=5.6 Score=26.11 Aligned_cols=17 Identities=24% Similarity=0.380 Sum_probs=14.2
Q ss_pred eEEEcCCCCCccCCCCC
Q 014545 315 ITYYCPHCNALNRPKES 331 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~~ 331 (423)
+-|.|+.|++.|-++..
T Consensus 4 gDW~C~~C~~~Nfa~r~ 20 (32)
T 2lk0_A 4 EDWLCNKCCLNNFRKRL 20 (32)
T ss_dssp SEEECTTTCCEEETTCC
T ss_pred CCCCcCcCcCCcChhcc
Confidence 56999999999987754
No 17
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=46.84 E-value=15 Score=27.03 Aligned_cols=35 Identities=23% Similarity=0.321 Sum_probs=25.5
Q ss_pred CCCCCcceeeccccccccCccccCCCCceEEEcCCCCCc
Q 014545 287 DDPSQSYALICGNCHMHNGLARKEDFPYITYYCPHCNAL 325 (423)
Q Consensus 287 ddpt~ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~l 325 (423)
+|--.|.-..|.+|...-.||... .+|.|..||..
T Consensus 11 ~gki~~~~~fCPkCG~~~~ma~~~----dr~~C~kCgyt 45 (55)
T 2k4x_A 11 DGKLVRKHRFCPRCGPGVFLAEHA----DRYSCGRCGYT 45 (55)
T ss_dssp CCCCCCSSCCCTTTTTTCCCEECS----SEEECTTTCCC
T ss_pred CCEEEEccccCcCCCCceeEeccC----CEEECCCCCCE
Confidence 344456678999999766666432 39999999975
No 18
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=45.52 E-value=7 Score=28.90 Aligned_cols=29 Identities=28% Similarity=0.722 Sum_probs=18.4
Q ss_pred ecccccc---------ccCccccCCCCc--eEEEcCCCCC
Q 014545 296 ICGNCHM---------HNGLARKEDFPY--ITYYCPHCNA 324 (423)
Q Consensus 296 IC~~C~~---------HNGlA~~ee~e~--i~yrC~~Cg~ 324 (423)
+|.-|.. .+|.+|--.|+. --|+||-||+
T Consensus 5 ~C~vCGyvYd~~~Gdp~~gi~pGt~fe~lP~dw~CP~Cg~ 44 (54)
T 4rxn_A 5 TCTVCGYIYDPEDGDPDDGVNPGTDFKDIPDDWVCPLCGV 44 (54)
T ss_dssp EETTTCCEECTTTCBGGGTBCTTCCGGGSCTTCBCTTTCC
T ss_pred ECCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCcCCCC
Confidence 6777765 356666433332 2689999996
No 19
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=44.95 E-value=4.8 Score=41.11 Aligned_cols=44 Identities=14% Similarity=0.389 Sum_probs=32.6
Q ss_pred CcceeeccccccccCcccc--------CCCCceEEEcCCCCCccCCCCCCCCC
Q 014545 291 QSYALICGNCHMHNGLARK--------EDFPYITYYCPHCNALNRPKESEGHI 335 (423)
Q Consensus 291 ~ryALIC~~C~~HNGlA~~--------ee~e~i~yrC~~Cg~lN~~~~~~~~~ 335 (423)
..+.-.|..|+ +||...- .|.-...|.|.+||+.|-.-++.+.+
T Consensus 217 ~~~~s~Cp~C~-~~~~t~~~~~~IP~F~eViims~~C~~CGyr~neVk~~g~i 268 (404)
T 2qkd_A 217 LQFNTNCPECN-APAQTNMKLVQIPHFKEVIIMATNCENCGHRTNEVKSGGAV 268 (404)
T ss_dssp EEEEECCTTTC-CTTCEEEEEECCTTSCCEEEEEEECSSSCCEEEEEEECSSS
T ss_pred eeecccCccCC-CccEEEEEEEeCCCCCcEEEEEEECCCCCCcccceeecccc
Confidence 35888999999 6887642 23335699999999999877765553
No 20
>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A
Probab=43.19 E-value=12 Score=27.99 Aligned_cols=37 Identities=22% Similarity=0.488 Sum_probs=24.7
Q ss_pred ceeeccc--cccc-cCccccCCCCceEEEcCCCCCccCCCC
Q 014545 293 YALICGN--CHMH-NGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 293 yALIC~~--C~~H-NGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
-.+.|.+ |+.. |-.+.- ++.--.|+|+.|+..|.-..
T Consensus 8 ~pvRC~r~~CraylNP~~~~-~~~~~~W~C~~C~~~N~~P~ 47 (59)
T 2yrc_A 8 EPVLCSRTTCRAVLNPLCQV-DYRAKLWACNFCYQRNQFPP 47 (59)
T ss_dssp CCCBCSCTTTCCBCCTTSEE-EGGGTEEECSSSCCEEECCS
T ss_pred CCcccCCCCCCeEECCceEE-ECCCCEEEcccCCCcCCCCH
Confidence 4578988 9764 333333 32234899999999997543
No 21
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=43.17 E-value=1.8e+02 Score=30.30 Aligned_cols=34 Identities=0% Similarity=0.066 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcC
Q 014545 136 KTLERLRVERKAKIDELKERTNYYTTQQLIQRYD 169 (423)
Q Consensus 136 ~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd 169 (423)
+...++.....+.+.-++.-.-|...+...++|.
T Consensus 196 ~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 229 (587)
T 3qf4_A 196 ESTDEVNRVVRENLLGVRVVRAFRREEYENENFR 229 (587)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHH
Confidence 3444444444444444444334444444444443
No 22
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=42.16 E-value=2.2e+02 Score=26.53 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=11.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHH
Q 014545 109 IFLLPGLSALAYSAFVSFNRM 129 (423)
Q Consensus 109 ~~l~Pili~li~~~~~~f~r~ 129 (423)
++++|+++.++..++ .|||.
T Consensus 152 ~vliPv~i~F~~Fa~-hFYrs 171 (214)
T 4hkr_A 152 VVLIPVMIIFMAFAI-HFYRS 171 (214)
T ss_dssp HHTHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHH
Confidence 566788887665443 34443
No 23
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=39.81 E-value=20 Score=28.95 Aligned_cols=41 Identities=24% Similarity=0.545 Sum_probs=27.2
Q ss_pred eeecccccc--ccCcc--ccCCCCceEEEcCCCCCccCCCCCCCC
Q 014545 294 ALICGNCHM--HNGLA--RKEDFPYITYYCPHCNALNRPKESEGH 334 (423)
Q Consensus 294 ALIC~~C~~--HNGlA--~~ee~e~i~yrC~~Cg~lN~~~~~~~~ 334 (423)
-|.|-.|-. |-... +..+.+.+.|+|+.|-...+.+.+.+.
T Consensus 37 LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~~~ke~~~~ 81 (88)
T 1fp0_A 37 LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDVD 81 (88)
T ss_dssp CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSSCCSSTT
T ss_pred EEECCCCCCceecccCCCCCCCCcCCCcCCccccCCCccchhhcc
Confidence 478888854 44444 334556689999999987665544443
No 24
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=39.42 E-value=14 Score=23.69 Aligned_cols=17 Identities=29% Similarity=0.831 Sum_probs=13.9
Q ss_pred eEEEcCCCCCccCCCCC
Q 014545 315 ITYYCPHCNALNRPKES 331 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~~ 331 (423)
..|.|+.|.++|.....
T Consensus 5 ~~W~C~~CTf~N~~~~~ 21 (31)
T 1nj3_A 5 AMWACQHCTFMNQPGTG 21 (31)
T ss_dssp CCEECSSSCCEECSSCS
T ss_pred ccccCCcccccCCCCCC
Confidence 47999999999987543
No 25
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=38.20 E-value=1.4e+02 Score=24.83 Aligned_cols=8 Identities=38% Similarity=0.804 Sum_probs=3.9
Q ss_pred HHHHHhcC
Q 014545 162 QQLIQRYD 169 (423)
Q Consensus 162 k~LLEKYd 169 (423)
++|.++.+
T Consensus 121 ~~l~~~l~ 128 (139)
T 3eff_K 121 RALHERFD 128 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555544
No 26
>1tfi_A Transcriptional elongation factor SII; transcription regulation; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=38.05 E-value=14 Score=26.70 Aligned_cols=31 Identities=19% Similarity=0.484 Sum_probs=22.6
Q ss_pred eeeccccccccCcccc------CCCCceEEEcCCCCC
Q 014545 294 ALICGNCHMHNGLARK------EDFPYITYYCPHCNA 324 (423)
Q Consensus 294 ALIC~~C~~HNGlA~~------ee~e~i~yrC~~Cg~ 324 (423)
...|.+|..++-..-. .|...+-|+|..||+
T Consensus 9 ~~~Cp~Cg~~~a~f~q~Q~RsaDE~mT~Fy~C~~Cg~ 45 (50)
T 1tfi_A 9 LFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGN 45 (50)
T ss_dssp CSCCSSSCSSCEEEEEECSSSSSSCCEEEEEESSSCC
T ss_pred ccCCCCCCCCEEEEEEecCcCCCCCceEEEEcCCCCC
Confidence 3679999976664331 356678899999996
No 27
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=37.04 E-value=15 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.223 Sum_probs=20.1
Q ss_pred CcceeeccccccccCccccCCCCceEEEcCCCCCc
Q 014545 291 QSYALICGNCHMHNGLARKEDFPYITYYCPHCNAL 325 (423)
Q Consensus 291 ~ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~l 325 (423)
.|.--.|.+|.+--=|++- . .+++|+.||+.
T Consensus 16 ~~~~k~CP~CG~~~fm~~~--~--~R~~C~kCG~t 46 (50)
T 3j20_Y 16 IRKNKFCPRCGPGVFMADH--G--DRWACGKCGYT 46 (50)
T ss_dssp ECSSEECSSSCSSCEEEEC--S--SEEECSSSCCE
T ss_pred EEecccCCCCCCceEEecC--C--CeEECCCCCCE
Confidence 3445679999763224432 2 48999999963
No 28
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=35.87 E-value=21 Score=29.72 Aligned_cols=38 Identities=26% Similarity=0.615 Sum_probs=25.2
Q ss_pred CCC-CcceeeccccccccCccc------cCCCCceEEEcCCCCCc
Q 014545 288 DPS-QSYALICGNCHMHNGLAR------KEDFPYITYYCPHCNAL 325 (423)
Q Consensus 288 dpt-~ryALIC~~C~~HNGlA~------~ee~e~i~yrC~~Cg~l 325 (423)
||+ .+-...|.+|.......- -.|...+-|+|..||+-
T Consensus 65 ~~tlp~~~~~Cp~C~~~~a~~~q~q~rsade~mt~fy~C~~C~~~ 109 (113)
T 3h0g_I 65 DPTLPRSDKECPRCHQHEAVFYQTHSRRGDTMMTLIYVCVHCGFA 109 (113)
T ss_dssp CSSSCBCCSCCSSSCCSCEEEECCCCSSCCCCCCCEEEESSSCCC
T ss_pred cccCCCcccCCCCCCCceEEEEEEecccCCCCCeeEEEcCCCCCE
Confidence 444 245588999995544332 13566778999999963
No 29
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=35.48 E-value=14 Score=31.89 Aligned_cols=32 Identities=25% Similarity=0.611 Sum_probs=23.9
Q ss_pred eeccccccccCccccCCCC--ceEEEcCCCCCccCC
Q 014545 295 LICGNCHMHNGLARKEDFP--YITYYCPHCNALNRP 328 (423)
Q Consensus 295 LIC~~C~~HNGlA~~ee~e--~i~yrC~~Cg~lN~~ 328 (423)
--|..|. |-|.|+++.+ ...|.|..|++.-..
T Consensus 25 ~FCPeCg--NmL~pked~~~~~l~~~CrtCgY~~~~ 58 (133)
T 3qt1_I 25 RFCRDCN--NMLYPREDKENNRLLFECRTCSYVEEA 58 (133)
T ss_dssp CBCTTTC--CBCBCCBCTTTCCBCCBCSSSCCBCCC
T ss_pred eeCCCCC--CEeeECccCCCceeEEECCCCCCcEEc
Confidence 4599996 7788886542 468999999986543
No 30
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=34.97 E-value=1.7e+02 Score=30.40 Aligned_cols=35 Identities=6% Similarity=0.174 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcCC
Q 014545 136 KTLERLRVERKAKIDELKERTNYYTTQQLIQRYDP 170 (423)
Q Consensus 136 ~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd~ 170 (423)
+...++.....+.+.-++.-.-|.......++|+.
T Consensus 194 ~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~ 228 (578)
T 4a82_A 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHH
Confidence 34445554445555544544445555555555543
No 31
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=34.76 E-value=13 Score=32.54 Aligned_cols=28 Identities=21% Similarity=0.547 Sum_probs=18.6
Q ss_pred cceeeccccccccCccccCCCCceEEEcCCCCCc
Q 014545 292 SYALICGNCHMHNGLARKEDFPYITYYCPHCNAL 325 (423)
Q Consensus 292 ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~l 325 (423)
.|...|..|+..--.- .+ .-+||.||.-
T Consensus 130 ~~~y~C~~Cg~~~~~~----~~--~~~Cp~CG~~ 157 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTL----PP--GGVCPDCGSK 157 (165)
T ss_dssp CCCEEESSSCCEESSC----CG--GGBCTTTCCB
T ss_pred cEEEECCCCCCcccCC----CC--CCcCCCCCCc
Confidence 4889999998644211 11 1289999964
No 32
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=34.74 E-value=15 Score=26.33 Aligned_cols=16 Identities=31% Similarity=0.702 Sum_probs=13.3
Q ss_pred eEEEcCCCCCccCCCC
Q 014545 315 ITYYCPHCNALNRPKE 330 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~ 330 (423)
-.|+|..|+.+|++.+
T Consensus 12 D~WkC~~C~~~N~Pl~ 27 (46)
T 2c6a_A 12 DYWKCTSCNEMNPPLP 27 (46)
T ss_dssp GCEECTTTCCEECSSC
T ss_pred ceEecccccccCCCcc
Confidence 4799999999998753
No 33
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=34.66 E-value=25 Score=28.50 Aligned_cols=34 Identities=26% Similarity=0.680 Sum_probs=23.2
Q ss_pred eeccc--cc---cccCccccCCCCceEEEcCCCCCccCC
Q 014545 295 LICGN--CH---MHNGLARKEDFPYITYYCPHCNALNRP 328 (423)
Q Consensus 295 LIC~~--C~---~HNGlA~~ee~e~i~yrC~~Cg~lN~~ 328 (423)
+-|-+ |. -|-..+-..+.+...|+|+.|...+..
T Consensus 50 I~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~k 88 (91)
T 1weu_A 50 IGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGP 88 (91)
T ss_dssp CCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCSS
T ss_pred eEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCCc
Confidence 44666 74 477777755544578999999765543
No 34
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=34.57 E-value=1.8e+02 Score=27.00 Aligned_cols=16 Identities=13% Similarity=0.532 Sum_probs=6.9
Q ss_pred ccchhh-hhHHHHHHHH
Q 014545 106 VLPIFL-LPGLSALAYS 121 (423)
Q Consensus 106 ~lp~~l-~Pili~li~~ 121 (423)
.+|+++ |=++++-.|+
T Consensus 154 liPv~i~F~~Fa~hFYr 170 (214)
T 4hkr_A 154 LIPVMIIFMAFAIHFYR 170 (214)
T ss_dssp THHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 356554 3333333443
No 35
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=31.85 E-value=12 Score=29.93 Aligned_cols=27 Identities=22% Similarity=0.516 Sum_probs=18.7
Q ss_pred eeccccccccCccccCCCCceEEEcCCCCCc
Q 014545 295 LICGNCHMHNGLARKEDFPYITYYCPHCNAL 325 (423)
Q Consensus 295 LIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~l 325 (423)
--|..|.. +=+..++ .+.|.|.+|+..
T Consensus 28 y~Cp~CG~-~~v~r~a---tGiW~C~~Cg~~ 54 (83)
T 1vq8_Z 28 HACPNCGE-DRVDRQG---TGIWQCSYCDYK 54 (83)
T ss_dssp EECSSSCC-EEEEEEE---TTEEEETTTCCE
T ss_pred CcCCCCCC-cceeccC---CCeEECCCCCCE
Confidence 57999975 2233333 479999999974
No 36
>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A
Probab=31.32 E-value=16 Score=40.26 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=24.1
Q ss_pred eeeccccccc-cCccccCCCCceEEEcCCCCCccCCC
Q 014545 294 ALICGNCHMH-NGLARKEDFPYITYYCPHCNALNRPK 329 (423)
Q Consensus 294 ALIC~~C~~H-NGlA~~ee~e~i~yrC~~Cg~lN~~~ 329 (423)
.+-|++|+.. |-...-.+ .--.|+|+.|+..|.-.
T Consensus 112 pvRC~~CrayiNPf~~~~~-~g~~W~C~~C~~~N~~P 147 (810)
T 1pcx_A 112 IVRCRRCRSYMNPFVTFIE-QGRRWRCNFCRLANDVP 147 (810)
T ss_dssp CCBCTTTCCBCCTTCEEET-TTTEEECTTTCCEEECC
T ss_pred CCccCCccCEecCceEEeC-CCCEEEccCCCCcCCCc
Confidence 5789999873 44443322 22489999999999643
No 37
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=31.20 E-value=14 Score=29.38 Aligned_cols=27 Identities=30% Similarity=0.713 Sum_probs=20.6
Q ss_pred CcceeeccccccccCccccCCCCceEEEcCCCCC
Q 014545 291 QSYALICGNCHMHNGLARKEDFPYITYYCPHCNA 324 (423)
Q Consensus 291 ~ryALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~ 324 (423)
.+|.|.|.-||..- .+.-..-||.||.
T Consensus 12 k~~iLrC~aCf~~t-------~~~~k~FCp~CGn 38 (79)
T 2con_A 12 RSYILRCHGCFKTT-------SDMNRVFCGHCGN 38 (79)
T ss_dssp CCEEEECSSSCCEE-------SCSSCCSCSSSCC
T ss_pred eeeeeEecccceEC-------CCcccccccccCc
Confidence 36999999999885 2234557999995
No 38
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=30.65 E-value=21 Score=32.21 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=23.0
Q ss_pred eeeccccccccCcccc------CCCCceEEEcCCCCC
Q 014545 294 ALICGNCHMHNGLARK------EDFPYITYYCPHCNA 324 (423)
Q Consensus 294 ALIC~~C~~HNGlA~~------ee~e~i~yrC~~Cg~ 324 (423)
..-|.+|...+-.+-. .|...+-|+|..||+
T Consensus 137 ~~~Cp~C~~~~a~~~q~Q~rsaDE~mt~f~~C~~C~~ 173 (178)
T 3po3_S 137 RFTCGKCKEKKVSYYQLQTRSAAAPLTTFCTCEACGN 173 (178)
T ss_dssp SSCCSSSCCSCEECCCCCCSCTTSCCCCCEEETTTCC
T ss_pred CcCCCCCCCCceEEEEeecccCCCCCcEEEEcCCCCC
Confidence 3679999976664432 356678899999996
No 39
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Probab=30.54 E-value=17 Score=40.80 Aligned_cols=35 Identities=17% Similarity=0.337 Sum_probs=24.2
Q ss_pred eeeccccccc-cCccccCCCCceEEEcCCCCCccCCC
Q 014545 294 ALICGNCHMH-NGLARKEDFPYITYYCPHCNALNRPK 329 (423)
Q Consensus 294 ALIC~~C~~H-NGlA~~ee~e~i~yrC~~Cg~lN~~~ 329 (423)
.+-|++|+.. |-...-.+ .--.|+|+.|+..|.-.
T Consensus 228 pvRC~rCrAYiNPf~~~~~-~g~~W~CnfC~~~N~~P 263 (926)
T 1m2v_B 228 IVRCRRCRSYMNPFVTFIE-QGRRWRCNFCRLANDVP 263 (926)
T ss_dssp CCBCSSSCCBCCTTCEEET-TTTEEECTTTCCEEECC
T ss_pred CCccCCccCEecCceEEeC-CCCEEEccCCCCCCCCc
Confidence 5789999873 44443322 22489999999999643
No 40
>2j9u_B VPS36, vacuolar protein sorting-associated protein 36; zinc-finger, metal-binding, protein transport; 2.00A {Saccharomyces cerevisiae} SCOP: g.41.11.1
Probab=30.38 E-value=17 Score=28.81 Aligned_cols=28 Identities=25% Similarity=0.384 Sum_probs=15.8
Q ss_pred ccCccccCCCCceEEEcCCCCCccCCCCCC
Q 014545 303 HNGLARKEDFPYITYYCPHCNALNRPKESE 332 (423)
Q Consensus 303 HNGlA~~ee~e~i~yrC~~Cg~lN~~~~~~ 332 (423)
|--||-. .-...|+|+-|.|.|+-....
T Consensus 6 ~~~~~~~--~~~~tWVCpICsfsN~v~s~f 33 (76)
T 2j9u_B 6 HHHMASA--DVVSTWVCPICMVSNETQGEF 33 (76)
T ss_dssp -----------CEEEECTTTCCEEEESSCC
T ss_pred cchhccc--ccccceECccccccCcCcccc
Confidence 4455553 335899999999999875443
No 41
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=29.95 E-value=24 Score=29.37 Aligned_cols=33 Identities=24% Similarity=0.457 Sum_probs=23.6
Q ss_pred eeccccccccCccccCCC--CceEEEcCCCCCccCCC
Q 014545 295 LICGNCHMHNGLARKEDF--PYITYYCPHCNALNRPK 329 (423)
Q Consensus 295 LIC~~C~~HNGlA~~ee~--e~i~yrC~~Cg~lN~~~ 329 (423)
.-|.+|. |-|.++++. ....|.|..|++.-...
T Consensus 5 ~FCp~Cg--n~L~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (113)
T 3h0g_I 5 QYCIECN--NMLYPREDKVDRVLRLACRNCDYSEIAA 39 (113)
T ss_dssp CCCSSSC--CCCEECCCTTTCCCCEECSSSCCEECCS
T ss_pred eeCcCCC--CEeeEcccCCCCeeEEECCCCCCeEEcC
Confidence 3588886 558887653 24689999999876543
No 42
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=29.58 E-value=1.7e+02 Score=23.19 Aligned_cols=7 Identities=14% Similarity=0.273 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 014545 45 LQYISKE 51 (423)
Q Consensus 45 L~~Ls~k 51 (423)
|+.|..+
T Consensus 35 L~~L~~k 41 (91)
T 3hd7_A 35 LSELDDR 41 (91)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3334333
No 43
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=29.09 E-value=21 Score=26.25 Aligned_cols=14 Identities=29% Similarity=0.940 Sum_probs=12.1
Q ss_pred EEEcCCCCCccCCC
Q 014545 316 TYYCPHCNALNRPK 329 (423)
Q Consensus 316 ~yrC~~Cg~lN~~~ 329 (423)
.|.|..|+.+|+..
T Consensus 11 ~WkC~~C~k~N~Pl 24 (53)
T 2cr8_A 11 EWQCTECKKFNSPS 24 (53)
T ss_dssp CEECSSSCCEECSS
T ss_pred eeecccccccCCCc
Confidence 68999999999874
No 44
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=28.35 E-value=32 Score=24.11 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=22.9
Q ss_pred eeeccccccccCccccCCCCceEEEcCCCCCccCCCC
Q 014545 294 ALICGNCHMHNGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 294 ALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
.|.|.+|..- -+. .+.+-..++|.+||..-+.+.
T Consensus 5 ~~~CP~C~~~-~l~--~d~~~gelvC~~CG~v~~e~~ 38 (50)
T 1pft_A 5 QKVCPACESA-ELI--YDPERGEIVCAKCGYVIEENI 38 (50)
T ss_dssp CCSCTTTSCC-CEE--EETTTTEEEESSSCCBCCCCC
T ss_pred cEeCcCCCCc-ceE--EcCCCCeEECcccCCcccccc
Confidence 5789999652 122 234457899999998766544
No 45
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=27.81 E-value=20 Score=30.24 Aligned_cols=33 Identities=24% Similarity=0.579 Sum_probs=24.5
Q ss_pred eeccccccccCccccCC--CCceEEEcCCCCCccCCC
Q 014545 295 LICGNCHMHNGLARKED--FPYITYYCPHCNALNRPK 329 (423)
Q Consensus 295 LIC~~C~~HNGlA~~ee--~e~i~yrC~~Cg~lN~~~ 329 (423)
+-|..|. |=|.++++ .....|.|..|++.....
T Consensus 5 ~FCp~Cg--nlL~~~~~~~~~~~~~~C~~C~y~~~~~ 39 (122)
T 1twf_I 5 RFCRDCN--NMLYPREDKENNRLLFECRTCSYVEEAG 39 (122)
T ss_dssp CBCSSSC--CBCEEEEETTTTEEEEECSSSSCEEECS
T ss_pred CcccccC--ccCcccccCcCCCCEEECCcCCCeeecC
Confidence 4688884 66777764 335799999999977654
No 46
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=27.75 E-value=22 Score=23.18 Aligned_cols=16 Identities=31% Similarity=0.733 Sum_probs=13.7
Q ss_pred eEEEcCCCCCccCCCC
Q 014545 315 ITYYCPHCNALNRPKE 330 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~ 330 (423)
..|.|+.|.++|....
T Consensus 7 ~~W~C~~CT~~N~~~~ 22 (34)
T 3a9j_C 7 AQWNCTACTFLNHPAL 22 (34)
T ss_dssp CCEECTTTCCEECTTC
T ss_pred CcCCCCCCccccCCCC
Confidence 5899999999998754
No 47
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=27.01 E-value=64 Score=22.63 Aligned_cols=19 Identities=21% Similarity=0.613 Sum_probs=15.2
Q ss_pred ceEEEcC--CCCCccCCCCCC
Q 014545 314 YITYYCP--HCNALNRPKESE 332 (423)
Q Consensus 314 ~i~yrC~--~Cg~lN~~~~~~ 332 (423)
.+-|.|+ .|++.|=++...
T Consensus 12 ~GDW~C~~~~C~~~Nfa~R~~ 32 (45)
T 1n0z_A 12 DGDWICPDKKCGNVNFARRTS 32 (45)
T ss_dssp SSSCBCSSTTTCCBCCSSCSB
T ss_pred CCCcCCCCCCCCCEEcccccc
Confidence 4668999 899999887653
No 48
>2d9g_A YY1-associated factor 2; ZF-ranbp domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.94 E-value=38 Score=24.68 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=14.7
Q ss_pred ceEEEcCCCCCccCCCCC
Q 014545 314 YITYYCPHCNALNRPKES 331 (423)
Q Consensus 314 ~i~yrC~~Cg~lN~~~~~ 331 (423)
...|.|+.|.+.|.....
T Consensus 9 ~~~W~C~~CT~~N~~~~~ 26 (53)
T 2d9g_A 9 EGYWDCSVCTFRNSAEAF 26 (53)
T ss_dssp CCCEECSSSCCEECSSCS
T ss_pred CCCcCCCCCccCCCCCCC
Confidence 368999999999987654
No 49
>3cng_A Nudix hydrolase; structural genomics, APC7497, PSI-2, protei structure initiative; 2.00A {Nitrosomonas europaea atcc 19718}
Probab=26.81 E-value=25 Score=30.69 Aligned_cols=29 Identities=28% Similarity=0.585 Sum_probs=22.2
Q ss_pred eccccccccCccccCCCCceEEEcCCCCC
Q 014545 296 ICGNCHMHNGLARKEDFPYITYYCPHCNA 324 (423)
Q Consensus 296 IC~~C~~HNGlA~~ee~e~i~yrC~~Cg~ 324 (423)
-|.+|....-...+.......++|..|++
T Consensus 5 ~C~~CG~~~~~~~~~G~~~~~~~~~~~~~ 33 (189)
T 3cng_A 5 FCSQCGGEVILRIPEGDTLPRYICPKCHT 33 (189)
T ss_dssp BCTTTCCBCEEECCTTCSSCEEEETTTTE
T ss_pred cCchhCCccccccccCCCCcceECCCCCC
Confidence 49999999888766433346789999994
No 50
>1pqv_S STP-alpha, transcription elongation factor S-II, DNA; mRNA cleavage, proofreading, BACKTRACKING, gene expression, multiprotein complex; 3.80A {Saccharomyces cerevisiae} SCOP: i.8.1.1 PDB: 1eo0_A
Probab=26.24 E-value=25 Score=34.27 Aligned_cols=31 Identities=16% Similarity=0.402 Sum_probs=23.4
Q ss_pred eeeccccccccCcccc------CCCCceEEEcCCCCC
Q 014545 294 ALICGNCHMHNGLARK------EDFPYITYYCPHCNA 324 (423)
Q Consensus 294 ALIC~~C~~HNGlA~~------ee~e~i~yrC~~Cg~ 324 (423)
.+-|.+|...+-.+-. .|...+-|+|..||+
T Consensus 268 ~~~C~~C~~~~~~~~q~Q~rsaDe~~t~f~~C~~Cg~ 304 (309)
T 1pqv_S 268 RFTCGKCKEKKVSYYQLQTRSADEPLTTFCTCEACGN 304 (309)
T ss_pred cccCCCCCCCeeEEEEeecccCCCCCcEEEEeCCCCC
Confidence 4689999977665442 356678899999996
No 51
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=26.03 E-value=37 Score=28.57 Aligned_cols=34 Identities=18% Similarity=0.445 Sum_probs=23.8
Q ss_pred cceeeccccccccCccc------cCCCCceEEEcCCCCCc
Q 014545 292 SYALICGNCHMHNGLAR------KEDFPYITYYCPHCNAL 325 (423)
Q Consensus 292 ryALIC~~C~~HNGlA~------~ee~e~i~yrC~~Cg~l 325 (423)
+--..|.+|..+.-..- -.|...+-|+|..||+.
T Consensus 70 ~t~~~Cp~C~~~~a~~~q~q~rsade~~t~fy~C~~C~~~ 109 (122)
T 1twf_I 70 RSDRECPKCHSRENVFFQSQQRRKDTSMVLFFVCLSCSHI 109 (122)
T ss_dssp CCCCCCTTTCCCCEEEEECSSCCTTCCCCEEEEETTTCCE
T ss_pred ccCCCCCCCCCCEEEEEEecCccCCCCceEEEEeCCCCCE
Confidence 34578999996544322 13566788999999974
No 52
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=24.68 E-value=24 Score=28.53 Aligned_cols=31 Identities=29% Similarity=0.682 Sum_probs=19.0
Q ss_pred eeecccccc---------ccCccccCCCCc--eEEEcCCCCC
Q 014545 294 ALICGNCHM---------HNGLARKEDFPY--ITYYCPHCNA 324 (423)
Q Consensus 294 ALIC~~C~~---------HNGlA~~ee~e~--i~yrC~~Cg~ 324 (423)
.-+|..|.. .+|.+|--.|+. --|+||-||+
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 367888863 344444322332 2689999996
No 53
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.30 E-value=39 Score=29.78 Aligned_cols=39 Identities=23% Similarity=0.356 Sum_probs=28.0
Q ss_pred eeccccccccCccccCCCCceEEEcCCCCCccCCCCCCCC
Q 014545 295 LICGNCHMHNGLARKEDFPYITYYCPHCNALNRPKESEGH 334 (423)
Q Consensus 295 LIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~~~~~~~~ 334 (423)
.+|..|.+-+=-.-+++. .+.-+|-.||+..+-...++|
T Consensus 105 VlC~~C~sPdT~L~k~~r-~~~l~C~ACGa~~~V~~~k~~ 143 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDR-FHFLKCEACGAETPIQHLLEH 143 (148)
T ss_dssp SSCSSSCCTTCCCCBSSS-SBCCCCSSSCCCCCCCC----
T ss_pred EECCCCCCcCcEEEEeCC-EEEEEecCCCCCccccchhhc
Confidence 789999998876666553 467799999999887665554
No 54
>1fjk_A Cardiac phospholamban; helix, membrane protein; NMR {Sus scrofa} SCOP: j.37.1.1 PDB: 1fjp_A 2kyv_A 1zll_A 2hyn_A 1n7l_A 2kb7_P 1plp_A
Probab=24.29 E-value=1e+02 Score=22.02 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=13.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHH
Q 014545 64 QTWRRMSRHLIIFTVVFEVIAVGYAI 89 (423)
Q Consensus 64 ~~~Rr~~~~Li~YS~il~ii~lvY~~ 89 (423)
+..++.+-.++-|.+++..+++.|.+
T Consensus 23 qarqnlqelfvnfclilicllli~ii 48 (52)
T 1fjk_A 23 QARQNLQNLFINFCLILIFLLLICII 48 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555555566665444444544
No 55
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Probab=23.97 E-value=28 Score=38.12 Aligned_cols=36 Identities=25% Similarity=0.533 Sum_probs=24.5
Q ss_pred eeeccc--ccc-ccCccccCCCCceEEEcCCCCCccCCCC
Q 014545 294 ALICGN--CHM-HNGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 294 ALIC~~--C~~-HNGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
++.|++ |+. -|-...- +..--.|+|+.|+..|.-..
T Consensus 53 pvRC~~~~CrayiNPf~~~-~~~~~~W~C~~C~~~N~~P~ 91 (768)
T 1m2o_A 53 PVVCSGPHCKSILNPYCVI-DPRNSSWSCPICNSRNHLPP 91 (768)
T ss_dssp CCBCCSTTTCCBCCTTSCE-ETTTTEECCTTTCCCCBCCG
T ss_pred CCccCCCCCCeEECCceEE-eCCCCEEEcccCCCCCCCCh
Confidence 588998 987 3444332 22235999999999997543
No 56
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=23.97 E-value=62 Score=30.15 Aligned_cols=38 Identities=13% Similarity=0.287 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccC
Q 014545 120 YSAFVSFNRMCDRKDQKTLERLRVERKAKIDELKERTN 157 (423)
Q Consensus 120 ~~~~~~f~r~~~~~~e~kL~~L~~e~kkkIeelK~~T~ 157 (423)
+++.-.+..|++...++.++.|++-+...|+.+|++-.
T Consensus 72 K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie 109 (214)
T 2cly_A 72 KKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAID 109 (214)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334456788888888899999988888887776543
No 57
>3b08_B Ranbp-type and C3HC4-type zinc finger-containing; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Mus musculus} PDB: 3b0a_B*
Probab=23.93 E-value=27 Score=26.66 Aligned_cols=18 Identities=28% Similarity=0.903 Sum_probs=14.7
Q ss_pred eEEEcCCCCCccCCCCCC
Q 014545 315 ITYYCPHCNALNRPKESE 332 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~~~ 332 (423)
-.|.|+.|.|+|......
T Consensus 7 ~~W~CP~CTf~N~p~~p~ 24 (64)
T 3b08_B 7 VGWQCPGCTFINKPTRPG 24 (64)
T ss_dssp CSEECTTTCCEECTTCSB
T ss_pred CCCcCCCccccCCCCCCc
Confidence 379999999999876543
No 58
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B
Probab=23.90 E-value=31 Score=37.71 Aligned_cols=35 Identities=23% Similarity=0.425 Sum_probs=24.7
Q ss_pred eeecccccc-ccCccccCCCCceEEEcCCCCCccCCCC
Q 014545 294 ALICGNCHM-HNGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 294 ALIC~~C~~-HNGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
.+-|++|+. -|-...--+ --+|+|+.|+..|.-..
T Consensus 85 p~RC~rCrayiNPf~~f~~--~~~w~Cn~C~~~N~~P~ 120 (751)
T 3eh1_A 85 IVRCRSCRTYINPFVSFID--QRRWKCNLCYRVNDVPE 120 (751)
T ss_dssp CCBCTTTCCBCCTTCEESS--SSEEECTTTCCEEECCG
T ss_pred CCcccCccCEeCCceEEec--CCEEEcccccCCCCCCH
Confidence 488999986 355444322 25999999999997543
No 59
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=23.68 E-value=17 Score=29.30 Aligned_cols=13 Identities=23% Similarity=0.766 Sum_probs=10.4
Q ss_pred CCceEEEcCCCCC
Q 014545 312 FPYITYYCPHCNA 324 (423)
Q Consensus 312 ~e~i~yrC~~Cg~ 324 (423)
++...|.||.||.
T Consensus 47 ~e~F~FkCP~CgE 59 (95)
T 2k5c_A 47 VEEFVFKCPVCGE 59 (95)
T ss_dssp HHHSEEECTTTCC
T ss_pred HHHHhhcCCCccH
Confidence 3457999999995
No 60
>4fyy_B Aspartate carbamoyltransferase regulatory chain; pyrimidine nucleotide biosynthesis, feedback inhibition, all transferase; HET: UTP CTP; 1.94A {Escherichia coli} PDB: 1ezz_B 1f1b_B* 1i5o_B* 1q95_G* 1r0b_G* 1r0c_B* 1raa_B* 1rab_B* 1rac_B* 1rad_B* 1rae_B* 1raf_B* 1rag_B* 1rah_B* 1rai_B* 1sku_B 1tth_B* 1tu0_B 1tug_B* 1xjw_B* ...
Probab=23.61 E-value=44 Score=29.69 Aligned_cols=30 Identities=27% Similarity=0.572 Sum_probs=20.7
Q ss_pred eec--cccccccCcccc-----CCCCceEEEcCCCCC
Q 014545 295 LIC--GNCHMHNGLARK-----EDFPYITYYCPHCNA 324 (423)
Q Consensus 295 LIC--~~C~~HNGlA~~-----ee~e~i~yrC~~Cg~ 324 (423)
+.| .+|-+|+--+.. .+.+-+.|||-||..
T Consensus 107 i~C~Np~CIT~~E~v~~~f~v~~~~~~~~~rC~YCe~ 143 (153)
T 4fyy_B 107 LVCPNSNCISHAEPVSSSFAVRKRANDIALKCKYCEK 143 (153)
T ss_dssp CCCSCTTBTTTTSSCCCEEEEEECSSSEEEEETTTCC
T ss_pred EECCCCCcccCCCCCCCEEEEEEcCCCCEEEeeCCCC
Confidence 788 579999854332 122346899999974
No 61
>2crc_A Ubiquitin conjugating enzyme 7 interacting protein 3; ZF-ranbp domain, hepatitis B virus X-associated protein 4, HBV associated factor 4; NMR {Homo sapiens}
Probab=22.81 E-value=26 Score=25.59 Aligned_cols=18 Identities=28% Similarity=0.903 Sum_probs=14.6
Q ss_pred eEEEcCCCCCccCCCCCC
Q 014545 315 ITYYCPHCNALNRPKESE 332 (423)
Q Consensus 315 i~yrC~~Cg~lN~~~~~~ 332 (423)
-.|.|+.|.|+|......
T Consensus 9 ~~W~Cp~CTf~N~p~~~~ 26 (52)
T 2crc_A 9 VGWQCPGCTFINKPTRPG 26 (52)
T ss_dssp SSBCCTTTCCCBCTTCSS
T ss_pred CCccCCCcccccCCCCCe
Confidence 379999999999876543
No 62
>2fzt_A Hypothetical protein TM0693; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.05A {Thermotoga maritima} SCOP: a.46.3.1 PDB: 2g42_A
Probab=22.17 E-value=72 Score=25.14 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 014545 137 TLERLRVERKAKIDEL 152 (423)
Q Consensus 137 kL~~L~~e~kkkIeel 152 (423)
+|..|-.+|++.|..|
T Consensus 22 ~L~~LL~kREkLlk~L 37 (79)
T 2fzt_A 22 TLLSLLNKRKELMEGL 37 (79)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHhhC
Confidence 4555555555444443
No 63
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=21.57 E-value=25 Score=34.72 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=25.3
Q ss_pred eeeccccccccCccccCCCCceEEEcCCCCCccCCC
Q 014545 294 ALICGNCHMHNGLARKEDFPYITYYCPHCNALNRPK 329 (423)
Q Consensus 294 ALIC~~C~~HNGlA~~ee~e~i~yrC~~Cg~lN~~~ 329 (423)
-++|..|.....- ..+|++.+..+|..||..-.++
T Consensus 21 ~~~Cp~C~~~~~~-lv~D~~~G~~vC~~CGlVl~e~ 55 (345)
T 4bbr_M 21 VLTCPECKVYPPK-IVERFSEGDVVCALCGLVLSDK 55 (345)
T ss_dssp -CCCSSCCCSSCC-EEEEGGGTEEEETTTCBEEESC
T ss_pred CCcCCCCCCCCCc-eeEECCCCcEEeCCCCCCccCc
Confidence 4799999874321 2357778999999999876654
No 64
>3teq_A Stromal interaction molecule 1; signaling protein; 1.90A {Homo sapiens}
Probab=21.28 E-value=58 Score=27.00 Aligned_cols=53 Identities=15% Similarity=0.352 Sum_probs=33.0
Q ss_pred HHhhhhccceeehhhhhhhccCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHhh
Q 014545 16 KAVEKKRKGIISRLWNGIFRLKGDDFEKRLQYISKEEAAILARVKRRSQTWRRM 69 (423)
Q Consensus 16 ~~~~~~~~~~~S~~w~~~Fr~~~d~FEK~L~~Ls~kI~~~~srLk~~~~~~Rr~ 69 (423)
++-+||+..||+- +.-..++.-|+++..+-+.-.-+.++...++.+..||+++
T Consensus 38 eKl~KKrsS~~gs-~~~ahs~slD~vD~~Il~Ak~aL~evt~~l~Er~~RW~qI 90 (101)
T 3teq_A 38 EKIKKKRNTLFGT-FHVAHSSSLDDVDHKILTAKQALSEATAALRERLHRWQQI 90 (101)
T ss_dssp HHHHHHHHHHHCH-HHHHTCGGGGGTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhchhee-eehhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467888888886 4333556678888766655555555555566655555544
No 65
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Probab=20.99 E-value=33 Score=37.60 Aligned_cols=36 Identities=22% Similarity=0.527 Sum_probs=24.4
Q ss_pred eeeccc--cccc-cCccccCCCCceEEEcCCCCCccCCCC
Q 014545 294 ALICGN--CHMH-NGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 294 ALIC~~--C~~H-NGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
++.|++ |+.. |-...- +..--.|+|+.|+..|.-..
T Consensus 62 pvRC~~~~CrayiNPf~~~-~~~~~~W~C~~C~~~N~~P~ 100 (769)
T 2nut_A 62 PVLCSRTTCRAVLNPLCQV-DYRAKLWACNFCYQRNQFPP 100 (769)
T ss_dssp CCBCSSTTCCCBCCTTSEE-ETTTTEEECSSSCCEEECCG
T ss_pred CCcCCCCCCCeEECCceEE-eCCCCEEEccCCCCCCCCCh
Confidence 588998 9873 443332 22234999999999997543
No 66
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=20.71 E-value=3.9e+02 Score=30.90 Aligned_cols=35 Identities=9% Similarity=0.132 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHHHHHhcC
Q 014545 135 QKTLERLRVERKAKIDELKERTNYYTTQQLIQRYD 169 (423)
Q Consensus 135 e~kL~~L~~e~kkkIeelK~~T~Y~~Tk~LLEKYd 169 (423)
.+...++.....+.|.-++.-.-|..-+..++||+
T Consensus 268 ~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 302 (1321)
T 4f4c_A 268 TLRYAKAGKVVEETISSIRTVVSLNGLRYELERYS 302 (1321)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHH
Confidence 33444444444444444444333444444445554
No 67
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=20.38 E-value=42 Score=25.01 Aligned_cols=10 Identities=30% Similarity=0.786 Sum_probs=5.5
Q ss_pred eecccccccc
Q 014545 295 LICGNCHMHN 304 (423)
Q Consensus 295 LIC~~C~~HN 304 (423)
.||.+|...|
T Consensus 20 ~ICrkC~ARn 29 (56)
T 2ayj_A 20 KVCRKCGALN 29 (56)
T ss_dssp EEETTTCCEE
T ss_pred hhhccccCcC
Confidence 5555555544
No 68
>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B
Probab=20.33 E-value=31 Score=37.87 Aligned_cols=36 Identities=19% Similarity=0.400 Sum_probs=24.1
Q ss_pred eeeccccccc-cCccccCCCCceEEEcCCCCCccCCCC
Q 014545 294 ALICGNCHMH-NGLARKEDFPYITYYCPHCNALNRPKE 330 (423)
Q Consensus 294 ALIC~~C~~H-NGlA~~ee~e~i~yrC~~Cg~lN~~~~ 330 (423)
++-|++|+.- |-.+.-.+ .--+|+|+.|+..|.-..
T Consensus 98 pvRC~rCrayiNPf~~f~~-~g~~w~Cn~C~~~N~~P~ 134 (770)
T 3efo_B 98 PVRCNRCKAYMCPFMQFIE-GGRRYQCGFCNCVNDVPP 134 (770)
T ss_dssp SCBCTTTCCBSCTTCEEEG-GGTEEECTTTCCEEECCG
T ss_pred CCccCCCCCCcCCceEEec-CCCEEEeccccccCCCch
Confidence 5789999863 43333222 124999999999997543
Done!