Query 014546
Match_columns 423
No_of_seqs 306 out of 2487
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 06:12:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014546.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014546hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1232 Proteins containing th 100.0 1.2E-74 2.6E-79 563.4 23.2 366 51-417 23-389 (511)
2 PRK11230 glycolate oxidase sub 100.0 3.8E-55 8.3E-60 460.0 39.4 333 80-420 19-351 (499)
3 PLN02805 D-lactate dehydrogena 100.0 4.5E-55 9.8E-60 462.8 39.0 333 75-419 91-425 (555)
4 COG0277 GlcD FAD/FMN-containin 100.0 1.9E-49 4.2E-54 412.1 35.3 331 86-422 2-335 (459)
5 TIGR00387 glcD glycolate oxida 100.0 1.1E-49 2.4E-54 410.7 33.2 292 120-418 1-292 (413)
6 PRK11183 D-lactate dehydrogena 100.0 1.6E-46 3.4E-51 388.4 27.8 273 80-367 3-329 (564)
7 PLN02441 cytokinin dehydrogena 100.0 7.2E-38 1.6E-42 328.1 25.3 233 93-334 41-281 (525)
8 KOG1231 Proteins containing th 100.0 2.3E-37 5E-42 309.0 15.3 312 85-408 29-361 (505)
9 PRK11282 glcE glycolate oxidas 100.0 1.8E-36 3.8E-41 304.9 19.1 190 125-317 3-193 (352)
10 TIGR01676 GLDHase galactonolac 100.0 9.6E-34 2.1E-38 296.9 22.4 201 107-318 52-252 (541)
11 TIGR01678 FAD_lactone_ox sugar 100.0 1.2E-32 2.5E-37 285.6 22.0 200 107-317 5-204 (438)
12 KOG1233 Alkyl-dihydroxyacetone 100.0 1E-32 2.2E-37 270.4 19.6 267 66-338 103-384 (613)
13 TIGR01679 bact_FAD_ox FAD-link 100.0 2.9E-32 6.4E-37 281.6 20.1 198 107-318 2-199 (419)
14 TIGR01677 pln_FAD_oxido plant- 100.0 1.9E-31 4.2E-36 282.5 22.6 205 105-317 20-234 (557)
15 PLN02465 L-galactono-1,4-lacto 100.0 3.1E-29 6.7E-34 264.9 22.5 201 107-318 87-287 (573)
16 PF01565 FAD_binding_4: FAD bi 100.0 3E-29 6.6E-34 220.5 13.6 139 117-256 1-139 (139)
17 PRK13905 murB UDP-N-acetylenol 99.9 1E-25 2.2E-30 223.1 16.2 251 100-383 17-282 (298)
18 PRK14652 UDP-N-acetylenolpyruv 99.9 7.5E-25 1.6E-29 217.0 19.1 272 78-383 2-285 (302)
19 PRK12436 UDP-N-acetylenolpyruv 99.9 4.8E-24 1E-28 211.6 19.5 189 81-292 5-197 (305)
20 PRK13906 murB UDP-N-acetylenol 99.9 7.4E-24 1.6E-28 210.3 19.7 193 79-292 3-197 (307)
21 PRK14653 UDP-N-acetylenolpyruv 99.9 1.4E-22 3.1E-27 199.9 16.6 190 80-293 3-194 (297)
22 TIGR00179 murB UDP-N-acetyleno 99.9 1.9E-22 4.2E-27 198.4 14.9 167 110-291 6-174 (284)
23 KOG4730 D-arabinono-1, 4-lacto 99.9 9.4E-22 2E-26 197.4 15.2 181 111-299 44-224 (518)
24 PRK13903 murB UDP-N-acetylenol 99.9 3.2E-21 7E-26 194.7 17.6 173 100-293 19-197 (363)
25 PRK14649 UDP-N-acetylenolpyruv 99.8 2.7E-20 5.9E-25 184.0 16.1 260 100-384 7-282 (295)
26 PRK14650 UDP-N-acetylenolpyruv 99.8 1.9E-18 4.1E-23 170.4 20.2 261 93-383 12-286 (302)
27 COG0812 MurB UDP-N-acetylmuram 99.8 5.2E-18 1.1E-22 165.3 16.8 175 100-292 7-183 (291)
28 PRK00046 murB UDP-N-acetylenol 99.8 3.2E-18 7E-23 171.1 13.0 176 100-292 7-188 (334)
29 PRK14648 UDP-N-acetylenolpyruv 99.8 8.1E-17 1.8E-21 161.2 21.7 142 94-247 10-156 (354)
30 PRK14651 UDP-N-acetylenolpyruv 99.6 3.8E-15 8.1E-20 145.2 15.0 161 100-292 7-170 (273)
31 KOG1262 FAD-binding protein DI 99.6 1.2E-15 2.5E-20 151.1 8.6 147 165-316 106-252 (543)
32 PRK13904 murB UDP-N-acetylenol 99.5 4.5E-13 9.8E-18 129.5 11.5 155 100-294 5-161 (257)
33 PF02913 FAD-oxidase_C: FAD li 98.8 3.4E-09 7.3E-14 100.5 4.4 116 292-412 1-116 (248)
34 PRK09799 putative oxidoreducta 97.6 0.00012 2.6E-09 71.4 6.1 144 119-288 4-155 (258)
35 PF00941 FAD_binding_5: FAD bi 97.4 6.6E-05 1.4E-09 68.7 1.9 103 118-225 3-116 (171)
36 TIGR03312 Se_sel_red_FAD proba 97.4 0.00031 6.8E-09 68.5 6.2 101 120-225 4-110 (257)
37 PRK09971 xanthine dehydrogenas 97.3 0.0012 2.6E-08 65.5 9.7 101 119-224 6-118 (291)
38 TIGR02963 xanthine_xdhA xanthi 97.0 0.0013 2.9E-08 69.4 6.9 104 116-224 191-303 (467)
39 TIGR03195 4hydrxCoA_B 4-hydrox 96.7 0.0018 4E-08 65.1 4.5 101 119-224 6-117 (321)
40 TIGR03199 pucC xanthine dehydr 96.6 0.0014 3.1E-08 64.0 3.1 97 123-224 1-109 (264)
41 TIGR02969 mam_aldehyde_ox alde 95.5 0.026 5.7E-07 66.8 6.8 103 118-225 237-359 (1330)
42 PLN00192 aldehyde oxidase 95.4 0.037 8.1E-07 65.6 7.9 108 117-224 233-352 (1344)
43 PLN02906 xanthine dehydrogenas 95.4 0.019 4E-07 68.0 5.3 104 117-224 228-350 (1319)
44 COG1319 CoxM Aerobic-type carb 94.3 0.1 2.2E-06 51.6 6.5 105 117-225 3-118 (284)
45 COG4630 XdhA Xanthine dehydrog 92.9 0.26 5.7E-06 50.1 6.6 129 112-251 198-337 (493)
46 PF09330 Lact-deh-memb: D-lact 64.2 15 0.00032 36.3 5.6 45 298-342 1-45 (291)
47 KOG0430 Xanthine dehydrogenase 56.9 19 0.00042 41.9 5.7 106 118-227 215-334 (1257)
48 PF00076 RRM_1: RNA recognitio 38.5 77 0.0017 22.9 4.9 47 267-317 14-60 (70)
49 PF14259 RRM_6: RNA recognitio 38.3 99 0.0022 22.7 5.5 38 279-316 22-59 (70)
50 COG4981 Enoyl reductase domain 37.9 44 0.00096 36.1 4.5 33 114-146 149-182 (717)
51 PF07317 YcgR: Flagellar regul 35.8 1.4E+02 0.003 25.0 6.4 68 123-206 4-71 (108)
52 PRK04322 peptidyl-tRNA hydrola 30.2 85 0.0019 26.7 4.3 39 105-145 38-76 (113)
53 cd07033 TPP_PYR_DXS_TK_like Py 30.1 73 0.0016 28.3 4.1 29 118-146 125-153 (156)
54 PF02779 Transket_pyr: Transke 25.5 1.1E+02 0.0023 27.8 4.4 32 118-149 139-172 (178)
55 cd02742 GH20_hexosaminidase Be 25.3 68 0.0015 31.9 3.3 24 123-146 68-91 (303)
56 cd06568 GH20_SpHex_like A subg 24.7 70 0.0015 32.3 3.3 23 124-146 72-94 (329)
57 PF00728 Glyco_hydro_20: Glyco 24.1 63 0.0014 32.3 2.8 24 123-146 69-92 (351)
58 cd06565 GH20_GcnA-like Glycosy 23.9 74 0.0016 31.6 3.2 24 123-146 56-79 (301)
59 PF13893 RRM_5: RNA recognitio 22.7 1.8E+02 0.0039 20.4 4.4 35 278-316 7-41 (56)
60 cd06563 GH20_chitobiase-like T 22.5 81 0.0018 32.1 3.3 22 125-146 84-105 (357)
61 COG1920 Predicted nucleotidylt 22.2 64 0.0014 30.4 2.2 73 80-152 35-128 (210)
62 cd06570 GH20_chitobiase-like_1 22.2 85 0.0018 31.5 3.3 23 124-146 65-87 (311)
63 PF02601 Exonuc_VII_L: Exonucl 22.0 1.3E+02 0.0028 30.0 4.6 34 117-150 42-87 (319)
64 cd06562 GH20_HexA_HexB-like Be 21.3 89 0.0019 31.8 3.3 22 125-146 68-89 (348)
65 KOG3282 Uncharacterized conser 20.5 1.5E+02 0.0032 27.6 4.2 34 112-145 120-153 (190)
66 TIGR03752 conj_TIGR03752 integ 20.4 1.6E+02 0.0035 31.4 4.9 25 234-258 304-328 (472)
67 smart00361 RRM_1 RNA recogniti 20.4 2.4E+02 0.0052 21.1 4.8 39 278-316 15-57 (70)
68 COG1519 KdtA 3-deoxy-D-manno-o 20.3 7.1E+02 0.015 26.2 9.5 67 81-149 218-293 (419)
No 1
>KOG1232 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=1.2e-74 Score=563.42 Aligned_cols=366 Identities=60% Similarity=0.978 Sum_probs=353.3
Q ss_pred cccccceeccccccc-ccccccCcccCCCCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHH
Q 014546 51 FGNASTIRYRCFGSE-ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEV 129 (423)
Q Consensus 51 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV 129 (423)
+..+....+..||++ |++++|+|.|+.++++++..+++|+|.+.+.++++++..|++||+.+|+|....|+.|.|++||
T Consensus 23 ~~~~~~~~~~~~~sea~~~v~R~p~fa~l~~~Dl~~Fk~iLg~d~~~~~~edL~~~n~dwm~kyrG~sklvL~Pkst~eV 102 (511)
T KOG1232|consen 23 FNAILTRIRTPFTSEAYPLVQRNPNFAKLDSKDLAYFKSILGKDEVSTDKEDLENFNTDWMKKYRGQSKLVLKPKSTEEV 102 (511)
T ss_pred chhhhceeecccccccchhhhcCCCcccccHHHHHHHHHHhcccccccChHHHhhhhhHHHHhccCCceEEecCCCHHHH
Confidence 334444667779999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCC
Q 014546 130 SQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDL 209 (423)
Q Consensus 130 ~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p 209 (423)
++|++||++.++.|+|+||+|++.|+++|+.+.||+++.+||+|+++|+..++++|++||+++++..+|+++|++||.|.
T Consensus 103 S~ILkYCn~~kLAVVPQGGNTgLVGgSVPvfDEiVlsl~~mNKi~sfDevsGil~cdaG~ILen~d~~l~e~g~m~PlDL 182 (511)
T KOG1232|consen 103 SAILKYCNDRKLAVVPQGGNTGLVGGSVPVFDEIVLSLGLMNKILSFDEVSGILKCDAGVILENADNFLAEKGYMFPLDL 182 (511)
T ss_pred HHHHHhhccccEEEecCCCCcccccCcccchHHHhhhhhhhccccccccccceEEeccceEehhhHHHHHhcCceeeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEc
Q 014546 210 GAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHT 289 (423)
Q Consensus 210 gs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l 289 (423)
|+.++|.|||+++|||||.+..|||+.+.+|+++|+|+|+|+++......+|+++|||+.++|+||||++||||++++-+
T Consensus 183 gAKgsCqiGG~vsTnAGGlrllRYGsLHgsvLGle~Vlp~G~vl~~~~slRKDNTgydlkhLFIGSEGtlGVvT~vSil~ 262 (511)
T KOG1232|consen 183 GAKGSCQIGGNVSTNAGGLRLLRYGSLHGSVLGLEVVLPNGTVLDLLSSLRKDNTGYDLKHLFIGSEGTLGVVTKVSILA 262 (511)
T ss_pred CCcccceecceeeccCCceEEEEecccccceeeeEEEcCCCchhhhhhhhcccCccccchhheecCCceeeEEeeEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHH
Q 014546 290 PPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESY 369 (423)
Q Consensus 290 ~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~ 369 (423)
.|.|+.+.++++..++++++.+++.++++.++++++||||||+.+++++.+++..+..|+++. .+||+|||++|+++++
T Consensus 263 ~~kpksvn~af~gi~sf~~v~k~fv~Aks~L~EILSafElmD~~s~~~~~~~l~~l~~pl~~~-~pFyiLiETsGSn~dh 341 (511)
T KOG1232|consen 263 PPKPKSVNVAFIGIESFDDVQKVFVEAKSNLTEILSAFELMDNASMELVLEYLKDLHFPLEDE-HPFYILIETSGSNKDH 341 (511)
T ss_pred cCCCcceeEEEEccccHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHhccCCCCccCC-CceEEEEEecCCCccc
Confidence 999999999999999999999999999999999999999999999999999986688888877 7899999999999999
Q ss_pred HHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhhHHHhhcc
Q 014546 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELITGYSRSIN 417 (423)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~~a~~~~~ 417 (423)
++++++++++..++.+.+.|.++|+|+.|..++|++|+.+++|+.+.+
T Consensus 342 D~eKl~afl~d~lek~lIsDGv~a~d~~~~~~lW~~Re~ip~a~~~~g 389 (511)
T KOG1232|consen 342 DEEKLTAFLEDCLEKGLISDGVLAQDEAEAQKLWKIRESIPEALQKAG 389 (511)
T ss_pred cHHHHHHHHHHhhhhcccccceecCCHHHHHHHHHHHhccHHHHHhcC
Confidence 999999999999999999999999999999999999999999998765
No 2
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=100.00 E-value=3.8e-55 Score=460.05 Aligned_cols=333 Identities=25% Similarity=0.392 Sum_probs=294.5
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~ 159 (423)
.+++++|++++|..+|+++++.+..|++|+...+...|.+|++|+|++||+++|++|+++++||++||+|||++|+++|.
T Consensus 19 ~~~~~~l~~~~g~~~v~~~~~~~~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~rG~Gt~~~gg~~~~ 98 (499)
T PRK11230 19 TSLLMALREHLPGLEILHTDEELIPYECDGLSAYRTRPLLVVLPKQMEQVQALLAVCHRLRVPVVARGAGTGLSGGALPL 98 (499)
T ss_pred HHHHHHHHHhcCcceEEcCHHHHHHhccCcccccCCCCCEEEeeCCHHHHHHHHHHHHHcCCeEEEECCCcCcCCCcccC
Confidence 46788999999999999999999999999866778899999999999999999999999999999999999999999988
Q ss_pred CCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccce
Q 014546 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGN 239 (423)
Q Consensus 160 ~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~ 239 (423)
.++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.++++|++...|||||+|++|+||.++.+||.++|+
T Consensus 99 ~~gividl~~ln~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~nagG~~~~~yG~~~d~ 178 (499)
T PRK11230 99 EKGVLLVMARFNRILDINPVGRRARVQPGVRNLAISQAAAPHGLYYAPDPSSQIACSIGGNVAENAGGVHCLKYGLTVHN 178 (499)
T ss_pred CCcEEEEcccCCCceEEcCCCCEEEEcCCccHHHHHHHHHHcCCeeCCCCCccccceEcceeccCCCCccceeeCChhhh
Confidence 88999999999999999999999999999999999999999999999999988889999999999999999999999999
Q ss_pred EeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHH
Q 014546 240 VLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK 319 (423)
Q Consensus 240 V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (423)
|++++||++||++++++... +++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.+++.++++
T Consensus 179 v~~levVl~~G~i~~~~~~~-~~~~g~dl~~l~~Gs~GtlGIIt~atlkl~p~p~~~~~~~~~f~~~~~a~~~~~~~~~- 256 (499)
T PRK11230 179 LLKVEILTLDGEALTLGSDA-LDSPGFDLLALFTGSEGMLGVVTEVTVKLLPKPPVARVLLASFDSVEKAGLAVGDIIA- 256 (499)
T ss_pred eeEEEEEcCCCcEEEeCCcc-CCCCccchHhhhccCCCccEEEEEEEEEEEcCCcceEEEEEECCCHHHHHHHHHHHHh-
Confidence 99999999999999987653 4567999999999999999999999999999999988889999999999999998864
Q ss_pred cCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceeEEeCCHHHH
Q 014546 320 LGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQA 399 (423)
Q Consensus 320 ~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~ 399 (423)
.+..|.++|+||+..++++.++. ....|.+ ..+++++|+.|.+++ +...++.+.+.+.+.+ ..+..+++++++.
T Consensus 257 ~~~~p~~~el~d~~~~~~~~~~~-~~~~p~~---~~~~ll~e~~g~~~~-v~~~~~~l~~~~~~~g-~~~~~~a~~~~~~ 330 (499)
T PRK11230 257 AGIIPGGLEMMDNLSIRAAEDFI-HAGYPVD---AEAILLCELDGVESD-VQEDCERVNDILLKAG-ATDVRLAQDEAER 330 (499)
T ss_pred cCCCcEEEEeeCHHHHHHHHHhc-CCCCCCC---cceEEEEEecCCchH-HHHHHHHHHHHHHhcC-CceEEEeCCHHHH
Confidence 46779999999999998887654 2222322 357899999998754 3445555555554444 4577888999999
Q ss_pred HHHHHHHhhhhHHHhhccCCC
Q 014546 400 SSFWRIRELITGYSRSINESR 420 (423)
Q Consensus 400 ~~lW~~R~~~~~a~~~~~~~~ 420 (423)
+++|+.|+.+.+++...++..
T Consensus 331 ~~~W~~R~~~~~~~~~~~~~~ 351 (499)
T PRK11230 331 VRFWAGRKNAFPAVGRISPDY 351 (499)
T ss_pred HHHHHHHHhhHHHHHhhCCCe
Confidence 999999999888887766653
No 3
>PLN02805 D-lactate dehydrogenase [cytochrome]
Probab=100.00 E-value=4.5e-55 Score=462.82 Aligned_cols=333 Identities=26% Similarity=0.379 Sum_probs=290.2
Q ss_pred cCCCCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccC--CCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccC
Q 014546 75 FSTLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYR--GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (423)
Q Consensus 75 ~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~--~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l 152 (423)
+....+.++++|++++|++ |.++++.+..|.+||...+. ..|.+|++|+|++||+++|++|+++++|++|+|||||+
T Consensus 91 ~~~~~~~~~~~L~~~l~~~-v~~~~~~~~~y~~d~~~~~~~~~~P~~Vv~P~s~eeV~~ivk~a~~~~ipv~prGgGts~ 169 (555)
T PLN02805 91 HKLVPQELIDELKAILQDN-MTLDYDERYFHGKPQNSFHKAVNIPDVVVFPRSEEEVSKIVKSCNKYKVPIVPYGGATSI 169 (555)
T ss_pred cccchHHHHHHHHHhcCCc-eecCHHHHHHhccCcccccccCCCCCEEEEcCCHHHHHHHHHHHHHCCCcEEEECCCCCC
Confidence 4455567889999999855 99999999999998743332 57999999999999999999999999999999999999
Q ss_pred CCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccc
Q 014546 153 VGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVR 232 (423)
Q Consensus 153 ~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~ 232 (423)
.|++.+..++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++ .+||||++++|++|.++.+
T Consensus 170 ~G~~~~~~ggivIdl~~mn~I~~id~~~~~vtVeaGv~~~~L~~~L~~~Gl~~p~~p~~--~~TIGG~ia~n~~G~~s~~ 247 (555)
T PLN02805 170 EGHTLAPHGGVCIDMSLMKSVKALHVEDMDVVVEPGIGWLELNEYLEPYGLFFPLDPGP--GATIGGMCATRCSGSLAVR 247 (555)
T ss_pred CCCccCCCCEEEEEccCCCCeEEEeCCCCEEEEeCCcCHHHHHHHHHHcCCEeCCCCcc--ccChhhHhhCCCcccccCc
Confidence 99988777899999999999999999999999999999999999999999999999874 5899999999999999999
Q ss_pred cccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHH
Q 014546 233 YGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (423)
Q Consensus 233 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~ 312 (423)
||.++|+|+++|||++||++++++....|++.||||+++++||+|+|||||+++||++|.|+.....++.|++++++.++
T Consensus 248 yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~g~dL~~l~~GseGtLGIIT~~tlrl~p~P~~~~~~~~~f~~~~~a~~a 327 (555)
T PLN02805 248 YGTMRDNVISLKVVLPNGDVVKTASRARKSAAGYDLTRLVIGSEGTLGVITEVTLRLQKIPQHSVVAMCNFPTIKDAADV 327 (555)
T ss_pred cccHHHhEEEEEEEcCCceEEEecCccccCCCCccHHHHhccCCCceEEEEEEEEEeecCCcceEEEEEEcCCHHHHHHH
Confidence 99999999999999999999998777678889999999999999999999999999999999998899999999999999
Q ss_pred HHHHHHHcCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceeEE
Q 014546 313 LREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVI 392 (423)
Q Consensus 313 ~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 392 (423)
+..+++ .+..|+++|+||+..++++..+. . ..++. .++|++|++|++++ .+++++.+.+.+.+.+ ..+..+
T Consensus 328 v~~i~~-~g~~psa~ElmD~~~~~~~~~~~-~--~~~p~---~~~Ll~e~~g~~~~-~~~~~~~~~~i~~~~g-~~~~~~ 398 (555)
T PLN02805 328 AIATML-SGIQVSRVELLDEVQIRAINMAN-G--KNLPE---APTLMFEFIGTEAY-AREQTLIVQKIASKHN-GSDFVF 398 (555)
T ss_pred HHHHHh-CCCCcEEEEEECHHHHHHHHHhc-C--CCCCc---ceEEEEEEecCcHH-HHHHHHHHHHHHHhCC-CceEEE
Confidence 998764 47789999999999999886643 2 22332 47899999997764 3444454444444444 468899
Q ss_pred eCCHHHHHHHHHHHhhhhHHHhhccCC
Q 014546 393 AQDINQASSFWRIRELITGYSRSINES 419 (423)
Q Consensus 393 a~d~~~~~~lW~~R~~~~~a~~~~~~~ 419 (423)
+.++++++++|++|+.+.++....++.
T Consensus 399 a~~~~e~~~lW~~R~~~~~~~~~~~~~ 425 (555)
T PLN02805 399 AEEPEAKKELWKIRKEALWACFAMEPK 425 (555)
T ss_pred eCCHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 999999999999999999988776654
No 4
>COG0277 GlcD FAD/FMN-containing dehydrogenases [Energy production and conversion]
Probab=100.00 E-value=1.9e-49 Score=412.11 Aligned_cols=331 Identities=36% Similarity=0.578 Sum_probs=286.3
Q ss_pred HHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEE
Q 014546 86 FKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVII 165 (423)
Q Consensus 86 L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvI 165 (423)
+.++++...+.+++.....|..||+ .+...|.+|+.|+|++||++++++|+++++||+|||+|||+.|+++|. ++|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~d~~-~~~~~p~~v~~p~s~~eV~~iv~~a~~~~~~v~prG~gts~~g~~~~~-~gvvl 79 (459)
T COG0277 2 LKRILGELNVLTDPADRAAYRTDAS-VYRGLPLAVVFPKSEEEVAAILRLANENGIPVVPRGGGTSLSGGAVPD-GGVVL 79 (459)
T ss_pred hhHhcCccceecCHHHHhhccCCcc-hhcCCCCEEEccCCHHHHHHHHHHHHHcCCeEEEECCCCCccccccCC-CcEEE
Confidence 5677888778899999999999987 778889999999999999999999999999999999999999999997 79999
Q ss_pred EcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEE
Q 014546 166 NMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEA 245 (423)
Q Consensus 166 dls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~lev 245 (423)
||++||+|+++|+++.+++||||+++.+|+++|.++|+++|++|++.+.|||||+|++|+||.++.+||.++|+|+++++
T Consensus 80 ~l~~mn~i~~id~~~~~~~v~aGv~l~~l~~~l~~~G~~~p~~p~s~~~~tIGG~ia~~~~G~~~~~yG~~~d~v~~l~v 159 (459)
T COG0277 80 DLSRLNRILEIDPEDGTATVQAGVTLEDLEKALAPHGLFLPVDPSSSGTATIGGNIATNAGGLRSLRYGLTRDNVLGLRV 159 (459)
T ss_pred EchhhcchhccCcCCCEEEEcCCccHHHHHHHHHHcCCccCCCccccccceEccchhcCCCCccceecccHHHheeEEEE
Confidence 99999999899999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred EeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH---HHcCC
Q 014546 246 VLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK---RKLGE 322 (423)
Q Consensus 246 Vl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 322 (423)
|++||++++++.+..|+++||||+++++||+|+|||||+++||+.|.|+...+.+..+++.+.+........ ...+.
T Consensus 160 V~~dG~i~~~~~~~~k~~~g~dl~~l~iGs~GtlGiit~~tl~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (459)
T COG0277 160 VLPDGEILRLGRKLRKDNAGYDLTALFVGSEGTLGIITEATLKLLPLPETKATAVAGFPSIEAAARLAVAAIALLEALGV 239 (459)
T ss_pred EcCCceehhhcCcccCCCCCCCHHHhcccCCccceEEEEEEEEeccCCchheEEEEeCCCHHHHHHHHHHHHHhhhhcCC
Confidence 999999999999988999999999999999999999999999999999999988999998887765443332 12235
Q ss_pred CceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHH
Q 014546 323 ILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSF 402 (423)
Q Consensus 323 ~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~l 402 (423)
.+.++|+||.. +..+..+......+.. .+.++++|+.|.+.....+....+.+.+.+.+...+..++.+.++..++
T Consensus 240 ~~~~~e~~~~~-~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (459)
T COG0277 240 IPAALEFMDRP-IKAAEAYLGGGALPLE---APARLLVEVEGSDEAAVDEALEALGELLLEHGLARDLVVAQDLAEAARL 315 (459)
T ss_pred Cceeeeecchh-HHHHHHhccccCCCCC---CceEEEEEEcCCcHHHHHHHHHHHHHHHHhcCCceeEEEeCCHHHHHHH
Confidence 78999999998 5555444322112222 2378999999987444555566666666565545678899999999999
Q ss_pred HHHHhhhhHHHhhccCCCCC
Q 014546 403 WRIRELITGYSRSINESRGC 422 (423)
Q Consensus 403 W~~R~~~~~a~~~~~~~~~~ 422 (423)
|..|+.+.+.....++..+|
T Consensus 316 ~~~r~~~~~~~~~~~~~~~~ 335 (459)
T COG0277 316 WLARKGALAAAGALGPGVIQ 335 (459)
T ss_pred HHHHHHHHHHHHhhCCCccc
Confidence 99999999999988876433
No 5
>TIGR00387 glcD glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity.
Probab=100.00 E-value=1.1e-49 Score=410.71 Aligned_cols=292 Identities=31% Similarity=0.489 Sum_probs=258.0
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHH
Q 014546 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLD 199 (423)
Q Consensus 120 Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~ 199 (423)
|++|+|++||+++|++|+++++|++|+|+|||+.|+..|..++++|||++||+|+++|+++.+++||||+++.+|+++|.
T Consensus 1 Vv~P~s~eev~~iv~~a~~~~i~v~~~G~Gt~~~g~~~~~~~~vvidl~~mn~i~~id~~~~~v~veaGv~~~~l~~~l~ 80 (413)
T TIGR00387 1 VVFPKNTEQVARILKLCHEHRIPIVPRGAGTGLSGGALPEEGGLVLVFKHMNKILEIDVVNLTAVVQPGVRNLELEQAVE 80 (413)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCccCCCCeEEEEhHHcCceeEEcCCCCEEEEcCCccHHHHHHHHH
Confidence 57899999999999999999999999999999999988877899999999999999999999999999999999999999
Q ss_pred hCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCe
Q 014546 200 DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSL 279 (423)
Q Consensus 200 ~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~Gtl 279 (423)
++|+++|++|++...+||||++++|++|.++.+||.++|+|++++||++||++++++....|+..||||+++++||+|+|
T Consensus 81 ~~gl~~~~~p~s~~~~tiGG~ia~na~G~~~~~yG~~~d~v~~l~vV~~~G~~~~~~~~~~~~~~g~dl~~l~~Gs~Gtl 160 (413)
T TIGR00387 81 EHNLFYPPDPSSQISSTIGGNIAENAGGMRGLKYGTTVDYVLGLEVVTADGEILRIGGKTAKDVAGYDLTGLFVGSEGTL 160 (413)
T ss_pred HcCCeeCCCCcccccceehhhhhcCCCCCcceeeccHHhheeeEEEEeCCCCEEEeCCcccCCCCCCChhhhcccCCccc
Confidence 99999999999988899999999999999999999999999999999999999999877778899999999999999999
Q ss_pred eEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEE
Q 014546 280 GIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVL 359 (423)
Q Consensus 280 GIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ll 359 (423)
||||+++||++|.|+......+.|++++++.+++..+++ .+..|+++|+||+..++.+.++. . ..++.. ..++++
T Consensus 161 Giit~~~lkl~p~p~~~~~~~~~f~~~~~~~~~~~~~~~-~~~~p~a~el~d~~~~~~~~~~~-~--~~~p~~-~~~~l~ 235 (413)
T TIGR00387 161 GIVTEATLKLLPKPENIVVALAFFDSIEKAMQAVYDIIA-AGIIPAGMEFLDNLSIKAVEDIS-G--IGLPKD-AGAILL 235 (413)
T ss_pred eEEEEEEEEeecCCCccEEEEEECCCHHHHHHHHHHHHh-cCCCcEEEEccCHHHHHHHHHhc-C--CCCCCC-CceEEE
Confidence 999999999999999988888999999999999998864 46789999999999998887652 2 223332 457899
Q ss_pred EEecCCChHHHHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhhHHHhhccC
Q 014546 360 IETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELITGYSRSINE 418 (423)
Q Consensus 360 ie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~~a~~~~~~ 418 (423)
+|+.|.+++ .++.++++.+.+.+.+ ..+..++.++++.+++|+.|+...+++....+
T Consensus 236 v~~~g~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~W~~r~~~~~~~~~~~~ 292 (413)
T TIGR00387 236 VEIDGVHEA-VERDEEKIEQICRKNG-AVDVQIAQDEEERALLWAGRRNAFKAASKLSP 292 (413)
T ss_pred EEecCCcHH-HHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHHHHHhHHHHHhhCC
Confidence 999998764 4455555555444443 45678889999999999999998887765443
No 6
>PRK11183 D-lactate dehydrogenase; Provisional
Probab=100.00 E-value=1.6e-46 Score=388.40 Aligned_cols=273 Identities=20% Similarity=0.311 Sum_probs=246.3
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~ 159 (423)
..++++|++++|+++|++++..+..|++||. ...+.|.+||+|.|++||++||++|+++++||+|||||||++|+++|.
T Consensus 3 ~~li~~L~~IvG~~~Vltd~~~l~~Y~~D~r-~~~g~P~AVV~P~SteEVa~IVklC~e~~vPVIPRGgGTGLtGGAvP~ 81 (564)
T PRK11183 3 KALINELTRIVGSSHVLTDPAKTERYRKGFR-SGQGDALAVVFPGTLLELWRVLQACVAADKIIIMQAANTGLTGGSTPN 81 (564)
T ss_pred HHHHHHHHHhcCcccEecCHHHHHHhccCcc-ccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEeCCCcccccCcccC
Confidence 4678999999999999999999999999985 467889999999999999999999999999999999999999999996
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCC-CcceeccccccCCCCCCcccc
Q 014546 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (423)
Q Consensus 160 ~~-----gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~-~~~tIGG~va~nagG~~~~~y 233 (423)
.+ +|+|||++||+|+++| ++.+++||||+++.+|+++|+++|+.++++|++. ..|||||+|++|+||.+..+|
T Consensus 82 ~~~~dR~gVVIsl~RMNrIleID-~~~~VvVePGVtl~~LeeaLk~~Gl~p~sd~GSS~IGasIGGnIAtNAGG~~vlRg 160 (564)
T PRK11183 82 GNDYDRDIVIISTLRLDKIQLLN-NGKQVLALPGTTLYQLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGALVQRG 160 (564)
T ss_pred CCCCcCCEEEEEhhHcCCcEEEC-CCCeEEEeCCCcHHHHHHHHHHhCCCCCCcccccccCCCCccceEECCcchhheEc
Confidence 53 7999999999999999 5678999999999999999999999988887543 346899999999999999999
Q ss_pred ccccceEeEEEEEeCCCcE-------EEccCCcc--c---CCCCC----------------------------------C
Q 014546 234 GSLHGNVLGLEAVLANGDV-------IDMLGTLR--K---DNTGY----------------------------------D 267 (423)
Q Consensus 234 G~~~d~V~~levVl~dG~i-------v~~~~~~~--k---~~~G~----------------------------------d 267 (423)
|.+.++++. ++|++||++ ++.+.+.. + ++.|| |
T Consensus 161 ga~te~vL~-~~V~~dGel~lVn~lgi~lG~~~e~il~~l~~~gy~~~~~~~~~~~~~d~~y~~~vr~v~~~~parfnaD 239 (564)
T PRK11183 161 PAYTEMALY-AQIDEDGKLELVNHLGIDLGETPEEILTRLEDGRFDDEDVRHDGRHASDHEYAERVRDVDADTPARFNAD 239 (564)
T ss_pred chhhhhhhh-hEECCCCcEEEeeccCcccCCCHHHHHHhhhcCCCCccccCCccccCchhhHHHhhhccCCCCcccccCC
Confidence 999999999 999999999 65554431 2 56788 9
Q ss_pred ccccc--ccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccCC
Q 014546 268 LKHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGV 345 (423)
Q Consensus 268 L~~l~--~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~ 345 (423)
+.++| .||+|+|||| +++|+++|.|+...++++.|++.+++.++.+.+....+..|.++||||+.+++++++|.
T Consensus 240 l~~LfeasGseGkLgV~-avrLdtfp~p~~~~vf~ig~n~~~~~~~~rr~il~~~~~lP~a~Eym~r~~~d~~~~yg--- 315 (564)
T PRK11183 240 PRRLFEASGCAGKLAVF-AVRLDTFPAEKNTQVFYIGTNDPAVLTEIRRHILANFKNLPVAGEYMHRDAFDIAEKYG--- 315 (564)
T ss_pred HHHHhhccCCCceEEEE-EEEeccccCCCcceEEEEeCCCHHHHHHHHHHHHHhCCCCceeEeecCHHHHHHHHHhC---
Confidence 99999 9999999999 99999999999999999999999999999999988778999999999999999999874
Q ss_pred CCCCCCCccceEEEEEecCCCh
Q 014546 346 RNPFSSSMHNFYVLIETTGSEE 367 (423)
Q Consensus 346 ~~~~~~~~~~~~llie~~g~~~ 367 (423)
+..+++|+.-|.+.
T Consensus 316 --------kd~~~~i~~~gt~~ 329 (564)
T PRK11183 316 --------KDTFLMIDKLGTDK 329 (564)
T ss_pred --------CccEEehhhhCchh
Confidence 23567777777653
No 7
>PLN02441 cytokinin dehydrogenase
Probab=100.00 E-value=7.2e-38 Score=328.07 Aligned_cols=233 Identities=18% Similarity=0.256 Sum_probs=208.7
Q ss_pred CcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHH--hCCCeEEEeCCCccCCCCccccCCeEEEEcCCC
Q 014546 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCN--SRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSM 170 (423)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~--~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~m 170 (423)
..+.+|+..+..|++||+..+...|.+|++|+|++||+++|++|+ +++++|.+||+||++.|++.+ .+|++|||++|
T Consensus 41 ~~v~~d~~~~~~~s~d~g~~~~~~P~aVv~P~S~eDVa~iVr~A~~~~~~~~V~~rGgGHS~~G~a~~-~~GivIdms~L 119 (525)
T PLN02441 41 GHLSFDPVSTASASKDFGNLVHSLPAAVLYPSSVEDIASLVRAAYGSSSPLTVAARGHGHSLNGQAQA-PGGVVVDMRSL 119 (525)
T ss_pred ceEEeCHHHHHHHhcCcccccCCCCCEEEeCCCHHHHHHHHHHHhhccCCceEEEECCCcCCCCCccC-CCeEEEECCCC
Confidence 468899999999999999888999999999999999999999997 679999999999999988876 57999999999
Q ss_pred CC------eEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEE
Q 014546 171 NN------IITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (423)
Q Consensus 171 n~------I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~le 244 (423)
|+ ++++|.+..+|+|+||++|.++.+++.++|+.++ .++....+|+||++++++.|..+.+||...|+|+++|
T Consensus 120 n~i~~~~~ii~vd~~~~~VtV~aG~~~~dv~~~l~~~GlaP~-~~~d~~~~TVGG~ist~G~gg~s~ryG~~~d~Vl~le 198 (525)
T PLN02441 120 RGGVRGPPVIVVSGDGPYVDVSGGELWIDVLKATLKHGLAPR-SWTDYLYLTVGGTLSNAGISGQAFRHGPQISNVLELD 198 (525)
T ss_pred CCcCccCceEEEcCCCCEEEEcCCCCHHHHHHHHHHCCCccC-CccccCceEEeEEcCCCCccccccccCcHHHhEEEEE
Confidence 99 6789999999999999999999999999998644 5666667899999999888888999999999999999
Q ss_pred EEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCc
Q 014546 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEIL 324 (423)
Q Consensus 245 vVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (423)
||++||++++++.. .++||+++++|++|+|||||+++|+++|.|+......+.|++++++.+.++.+.+ ...+
T Consensus 199 VVtadGevv~~s~~-----~n~DLF~Av~GglG~fGIIT~atlrL~Pap~~v~~~~~~y~~~~~~~~d~~~li~--~~~~ 271 (525)
T PLN02441 199 VVTGKGEVVTCSPT-----QNSDLFFAVLGGLGQFGIITRARIALEPAPKRVRWIRVLYSDFSTFTRDQERLIS--RPPE 271 (525)
T ss_pred EEeCCceEEEeCCC-----CChhHHHhhccCCCCcEEEEEEEEEEEecCCceEEEEEEcCCHHHHHHHHHHHHh--cCCC
Confidence 99999999999753 5679999999999999999999999999999888888889999999999988764 2334
Q ss_pred eEEEeeCHHH
Q 014546 325 SAFEFLDNQS 334 (423)
Q Consensus 325 ~a~E~~d~~~ 334 (423)
.++|+++...
T Consensus 272 ~~~d~veg~~ 281 (525)
T PLN02441 272 NSFDYVEGFV 281 (525)
T ss_pred CCcceEeEEE
Confidence 5677766543
No 8
>KOG1231 consensus Proteins containing the FAD binding domain [Energy production and conversion]
Probab=100.00 E-value=2.3e-37 Score=308.96 Aligned_cols=312 Identities=20% Similarity=0.290 Sum_probs=236.5
Q ss_pred HHHHhhCC---CcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCeEEEeCCCccCCCCcccc
Q 014546 85 YFKELLGE---KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPV 159 (423)
Q Consensus 85 ~L~~ilg~---~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~--~ipv~~~GgGt~l~g~~~~~ 159 (423)
.+..++|. ..+..++.....-++|+...+.-.|.+|+.|+|++||++++|+|+.+ .+||.+||+||++.|++.+.
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~a~~s~dFg~~~~~~P~aVL~P~S~edVs~ilk~~~~~~s~~pVaarG~GhSl~Gqa~a~ 108 (505)
T KOG1231|consen 29 SLKKILGNSLEGTLESDPSSVAHASTDFGNRTQLPPLAVLFPSSVEDVSKILKHCNDYGSNFPVAARGGGHSLEGQALAT 108 (505)
T ss_pred chhhhcCccccceeeccchhhhhhhhhccccCCCCCeeEEcCCCHHHHHHHHHHHhccCCcceeeccCCcccccCccccC
Confidence 45666662 33445555667777888778888999999999999999999999999 99999999999999999987
Q ss_pred CCeEEEEcC---CCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCC--CcccCCCCCCcceeccccccCCCCCCccccc
Q 014546 160 FDEVIINMG---SMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF--IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYG 234 (423)
Q Consensus 160 ~~gvvIdls---~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl--~~~~~pgs~~~~tIGG~va~nagG~~~~~yG 234 (423)
.+|++|.|+ .|+++-.++.++.+|.|+||..|-+|++++.++|+ .++.||+. .||||++++.+.|...+|||
T Consensus 109 ~~GvvV~m~~~~~~~~~~~~~~~~~yvdV~~g~~Widll~~t~e~GL~p~swtDyl~---ltVGGtlsnagiggqafRyG 185 (505)
T KOG1231|consen 109 RGGVVVCMDSSLLMKDVPVLVVDDLYVDVSAGTLWIDLLDYTLEYGLSPFSWTDYLP---LTVGGTLSNAGIGGQAFRYG 185 (505)
T ss_pred CCCeEEEEehhhccCCCceeecccceEEeeCChhHHHHHHHHHHcCCCccCcCCccc---eeecceeccCccccceeecc
Confidence 889776654 46777677888899999999999999999999999 68888874 78999999999999999999
Q ss_pred cccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCC---ceeeEEEE-EcCCHHHHH
Q 014546 235 SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL---SSVNLAFL-ACKDYFSCQ 310 (423)
Q Consensus 235 ~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p---~~~~~~~~-~~~~~~~~~ 310 (423)
...+||+.++||+++|++++|..+ .|++|+.+++|++|+|||||+++++|+|.| +....... .|+.++.+.
T Consensus 186 pqi~NV~~LdVVtgkGeiv~cs~r-----~n~~lf~~vlGglGqfGIITrArI~le~aP~~dQe~lis~~~~fd~veg~~ 260 (505)
T KOG1231|consen 186 PQISNVIELDVVTGKGEIVTCSKR-----ANSNLFFLVLGGLGQFGIITRARIKLEPAPKRDQERLISVCGSFDTVEGAA 260 (505)
T ss_pred chhhceEEEEEEcCCCcEEecccc-----cCceeeeeeeccCcceeeEEEEEEEeccCCccchHHhhhhhcCCcchhhhh
Confidence 999999999999999999999765 789999999999999999999999999999 43333333 566666554
Q ss_pred HHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccCCCCCC------CCCccceEEEEEecCCChHHHHHHHHHHHHHHhhC
Q 014546 311 KLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPF------SSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 384 (423)
Q Consensus 311 ~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~------~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~ 384 (423)
.....-. ..+...+.+|+.|...+..+...- .+-.-+ ... ..-.+..|+.|..+..... ...+++.....
T Consensus 261 ~~~~~gl-~~n~r~s~f~l~D~~~i~~~~~~~-~~~yclev~ky~d~~-e~pti~~e~~~l~~~l~~~-~~~~~~~~v~y 336 (505)
T KOG1231|consen 261 IVARNGL-QSNIRVSRFELLDEVQIAAINSDH-STNYCLEVAKYYDLT-EAPTLFQEIGGLSEKLNYA-PTFIVEQDVQY 336 (505)
T ss_pred hhhhccc-cccceeeccccCcHHHHHHHHhcC-CeeeeeehhhccCcc-cCchHHHHHhccchhhhcc-chhhhhhhhHH
Confidence 4432321 123446679999999998887642 221111 111 1124566777754322111 12233332222
Q ss_pred CCcce-eEEeCCHHHHHHHHHHHhh
Q 014546 385 GLISD-GVIAQDINQASSFWRIREL 408 (423)
Q Consensus 385 ~~~~~-~~~a~d~~~~~~lW~~R~~ 408 (423)
....| +.++.+..+...||+.||-
T Consensus 337 ~~fldrv~~ae~klrskgLWevphp 361 (505)
T KOG1231|consen 337 HDFLDRVHFAEDKLRSKGLWEVPHP 361 (505)
T ss_pred HHhhhHhhhcccchhhcccccCCCc
Confidence 22233 6778888889999999996
No 9
>PRK11282 glcE glycolate oxidase FAD binding subunit; Provisional
Probab=100.00 E-value=1.8e-36 Score=304.90 Aligned_cols=190 Identities=22% Similarity=0.341 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC
Q 014546 125 TTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI 204 (423)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~ 204 (423)
..+||+++|++|+++++||+|+||||+...+. +. ++++|||++||+|+++|+++.+++||||+++.+|+++|.++|+.
T Consensus 3 ~~~ev~~~v~~A~~~~~~v~~~GgGt~~~~g~-~~-~~~vldl~~ln~Ile~d~~~~~vtV~AG~~l~el~~~L~~~G~~ 80 (352)
T PRK11282 3 ISAALLERVRQAAADGTPLRIRGGGSKDFYGR-AL-AGEVLDTRAHRGIVSYDPTELVITARAGTPLAELEAALAEAGQM 80 (352)
T ss_pred hHHHHHHHHHHHHHCCCeEEEECCCCCCCCCC-CC-CCeEEEcccCCCcEEEcCCCCEEEECCCCCHHHHHHHHHHcCCe
Confidence 47899999999999999999999998644443 32 46799999999999999999999999999999999999999999
Q ss_pred cccCCCCCC-cceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEE
Q 014546 205 MPLDLGAKG-SCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVT 283 (423)
Q Consensus 205 ~~~~pgs~~-~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt 283 (423)
+|++|+..+ .+||||++++|++|+++.+||.++|+|+++++|++||++++++.+..|+.+||||+++++||+|+|||||
T Consensus 81 lp~~p~~~~~~~TIGG~iatg~~G~~~~~yG~~~D~Vlg~~vV~~~Gei~~~gg~v~kn~~G~DL~~l~~Gs~GtLGVit 160 (352)
T PRK11282 81 LPFEPPHFGGGATLGGMVAAGLSGPRRPWAGAVRDFVLGTRLINGRGEHLRFGGQVMKNVAGYDVSRLMAGSLGTLGVLL 160 (352)
T ss_pred eCCCCCCcCCCcEehhHHhcCCCCccccccCCHHHhEeeEEEEcCCceEEEeCCcccCCCCCchHHHHHhhCCchhhhhe
Confidence 998876544 4899999999999999999999999999999999999999999887889999999999999999999999
Q ss_pred EEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH
Q 014546 284 KVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (423)
Q Consensus 284 ~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (423)
+++||++|.|+...+..+.++ .+++.+++.++.
T Consensus 161 evtlkl~P~p~~~~t~~~~~~-~~~a~~~~~~~~ 193 (352)
T PRK11282 161 EVSLKVLPRPRAELTLRLEMD-AAEALRKLNEWG 193 (352)
T ss_pred EEEEEEEecCceEEEEEEecC-HHHHHHHHHHHh
Confidence 999999999998776656554 566677666664
No 10
>TIGR01676 GLDHase galactonolactone dehydrogenase. This model represents L-Galactono-gamma-lactone dehydrogenase (EC 1.3.2.3). This enzyme catalyzes the final step in ascorbic acid biosynthesis in higher plants. This protein is homologous to ascorbic acid biosynthesis enzymes of other species: L-gulono-gamma-lactone oxidase in rat and L-galactono-gamma-lactone oxidase in yeast. All three covalently bind the cofactor FAD.
Probab=100.00 E-value=9.6e-34 Score=296.94 Aligned_cols=201 Identities=18% Similarity=0.312 Sum_probs=180.8
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~Ve 186 (423)
++|++.+...|..+++|+|++||+++|+.|++++.+|+++|+|||+++.+.+ ++.+|||++||+|+++|+++.+|+||
T Consensus 52 ~NWsg~~~~~p~~~~~P~s~eEV~~iV~~A~~~g~~Vr~~GsGhS~sg~a~t--~g~lldL~~ln~Vl~vD~~~~tVtV~ 129 (541)
T TIGR01676 52 SNWSGTHEVLTRTFHQPEAIEELEGIVKQANEKKARIRPVGSGLSPNGIGLS--RAGMVNLALMDKVLEVDEEKKRVRVQ 129 (541)
T ss_pred cccCCccccCcceEECCCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCcccC--CCeEEEhhhCCCCEEEcCCCCEEEEc
Confidence 4888888999999999999999999999999999999999999999887764 45689999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCC
Q 014546 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (423)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~ 266 (423)
||+++.+|+++|.++|+.++ .+++...+||||++++|+||.+ .+||.++|+|+++++|++||+++.++.. ..+
T Consensus 130 AG~~l~~L~~~L~~~Glal~-n~gsi~~~TIGGaiatgtHGtg-~~~G~l~d~V~~l~lVta~G~vv~~s~~-----~~p 202 (541)
T TIGR01676 130 AGIRVQQLVDAIKEYGITLQ-NFASIREQQIGGIIQVGAHGTG-AKLPPIDEQVIAMKLVTPAKGTIEISKD-----KDP 202 (541)
T ss_pred CCCCHHHHHHHHHHcCCEec-cCCCCCCceEccccccCCcCCC-CCCCCHHHhEEEEEEEECCCCEEEECCC-----CCH
Confidence 99999999999999999997 4566778999999999999985 5899999999999999999999998753 356
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (423)
||+++++||+|+|||||++||++.|.+......+. .+++++.+.+.++.+
T Consensus 203 dLF~AargslG~LGVItevTLr~~Pa~~l~~~~~~--~~~~e~l~~~~~~~~ 252 (541)
T TIGR01676 203 ELFFLARCGLGGLGVVAEVTLQCVERQELVEHTFI--SNMKDIKKNHKKFLA 252 (541)
T ss_pred HHHHHHhcCCCceEeEEEEEEEEEeccceeEEEEe--cCHHHHHHHHHHHHh
Confidence 99999999999999999999999999987654433 568888888887653
No 11
>TIGR01678 FAD_lactone_ox sugar 1,4-lactone oxidases. This model represents a family of at least two different sugar 1,4 lactone oxidases, both involved in synthesizing ascorbic acid or a derivative. These include L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae. Members are proposed to have the cofactor FAD covalently bound at a site specified by Prosite motif PS00862; OX2_COVAL_FAD; 1.
Probab=100.00 E-value=1.2e-32 Score=285.58 Aligned_cols=200 Identities=25% Similarity=0.381 Sum_probs=179.2
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~Ve 186 (423)
++|+..+...|.+|+.|+|++||+++|++|+++++||+++|+|||+++..+ .+|++|||++||+|+++|+++.+|+||
T Consensus 5 ~nW~~~~~~~p~~v~~P~s~eev~~iv~~A~~~~~~v~v~G~GhS~s~~~~--~~gvvIdl~~l~~i~~id~~~~~vtV~ 82 (438)
T TIGR01678 5 QNWAKTYSASPEVYYQPTSVEEVREVLALAREQKKKVKVVGGGHSPSDIAC--TDGFLIHLDKMNKVLQFDKEKKQITVE 82 (438)
T ss_pred EeCCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEECCCCCCCCCcc--CCeEEEEhhhcCCceEEcCCCCEEEEc
Confidence 478877888999999999999999999999999999999999999876554 578999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCC
Q 014546 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (423)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~ 266 (423)
||+++.+|.++|.++|+.+|. +++...+||||+++++++|. +.+||.++|+|+++++|++||++++++.. .++
T Consensus 83 aG~~l~~L~~~L~~~Gl~l~~-~g~~~~~TvGG~iatg~hG~-~~~~G~~~d~V~~l~vV~~~G~i~~~s~~-----~~~ 155 (438)
T TIGR01678 83 AGIRLYQLHEQLDEHGYSMSN-LGSISEVSVAGIISTGTHGS-SIKHGILATQVVALTIMTADGEVLECSEE-----RNA 155 (438)
T ss_pred CCCCHHHHHHHHHHcCCEecC-CCCCCCceeeehhcCCCCCC-ccccCcHHhhEEEEEEEcCCCcEEEeCCC-----CCh
Confidence 999999999999999999885 45566789999999999996 78999999999999999999999998754 457
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (423)
||+++.+|++|+|||||+++|++.|.+..... ....+++++.+.+++..
T Consensus 156 dlf~a~~~~~G~lGIIt~vtl~l~p~~~l~~~--~~~~~~~~~~~~~~~~~ 204 (438)
T TIGR01678 156 DVFQAARVSLGCLGIIVTVTIQVVPQFHLQET--SFVSTLKELLDNWDSHW 204 (438)
T ss_pred hHHHHHhcCCCceEeeEEEEEEEEeccceEEE--EecCCHHHHHHHHHHHh
Confidence 99999999999999999999999998776544 35677888888877654
No 12
>KOG1233 consensus Alkyl-dihydroxyacetonephosphate synthase [General function prediction only]
Probab=100.00 E-value=1e-32 Score=270.41 Aligned_cols=267 Identities=21% Similarity=0.317 Sum_probs=226.0
Q ss_pred ccccccCcccCCCCHHHHHHHHHhhCCCcEecChhHHHHh----h---c----ccccccCCCccEEEEcCCHHHHHHHHH
Q 014546 66 ATKFERNAAFSTLNSEDVSYFKELLGEKSVIQDEDVLLAA----N---E----DWMRKYRGSSKLLLQPRTTNEVSQILK 134 (423)
Q Consensus 66 ~~~~~~~~~~~~~~~~~l~~L~~ilg~~~v~~~~~~l~~y----~---~----d~~~~~~~~p~~Vv~P~s~eeV~~iv~ 134 (423)
++++.+|..-.--+.+++..|++ .+|....+...+. . . -|-+++...|+.||.|++.+||.+||+
T Consensus 103 ~s~~p~d~P~~VeNedflh~Lke----t~isyS~Ea~dRl~R~HGhtlhdi~~Lregkf~RiPDiVvWP~chdevVkiv~ 178 (613)
T KOG1233|consen 103 LSDVPIDAPRPVENEDFLHFLKE----TKISYSNEARDRLMRGHGHTLHDIINLREGKFPRIPDIVVWPKCHDEVVKIVE 178 (613)
T ss_pred cccCcccCCCCccchHHHHHHHh----ccCccchhHHHHHHhhcCchHHHHHHHhcCccCCCCceEecccchHHHHHHHH
Confidence 77777776666666777887773 3444443332211 1 1 145678888999999999999999999
Q ss_pred HHHhCCCeEEEeCCCccCCCCccccCC----eEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCC
Q 014546 135 YCNSRLLAVVPQGGNTGLVGGSVPVFD----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLG 210 (423)
Q Consensus 135 ~a~~~~ipv~~~GgGt~l~g~~~~~~~----gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pg 210 (423)
.|.+|++.++|.||||+.+++..+..+ -+-+|++.||+|+.+|.++.++.+|+|++-.+|.+.|.+.|++....|.
T Consensus 179 lA~khN~~iiPiGGGTSVs~al~cP~~E~R~iislDtsqmnriLWidreNLT~~~eaGIvGQ~LERqL~~~G~t~GHEPD 258 (613)
T KOG1233|consen 179 LAMKHNCAIIPIGGGTSVSNALDCPETEKRAIISLDTSQMNRILWIDRENLTCRAEAGIVGQSLERQLNKKGFTCGHEPD 258 (613)
T ss_pred HHhhcCeEEEEeCCcccccccccCCcccceeEEEecHHhhhheeEeccccceEEEecCcchHHHHHHHhhcCcccCCCCC
Confidence 999999999999999999876543233 3568899999999999999999999999999999999999999999999
Q ss_pred CCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcc
Q 014546 211 AKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTP 290 (423)
Q Consensus 211 s~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~ 290 (423)
|...+|+||||++.++|+.-.+||.+.|.|+.+++|+|.|.+-+.- ...+-++|||+.+.+.||||||||||++++|..
T Consensus 259 S~EFSTlGGWVsTRASGMKKN~YGNIEDLVVh~~mVtP~Giiek~C-q~PRmS~GPDihh~IlGSEGTLGVitEvtiKir 337 (613)
T KOG1233|consen 259 SIEFSTLGGWVSTRASGMKKNKYGNIEDLVVHLNMVTPKGIIEKQC-QVPRMSSGPDIHHIILGSEGTLGVITEVTIKIR 337 (613)
T ss_pred ceeeecccceeeeccccccccccCChhHheEEEEeecCcchhhhhh-cCCcccCCCCcceEEeccCcceeEEEEEEEEEe
Confidence 9999999999999999999999999999999999999999876532 234677999999999999999999999999999
Q ss_pred cCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHH
Q 014546 291 PKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLV 338 (423)
Q Consensus 291 p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~ 338 (423)
|.|+......+.||++++-..+++++..+ .-.|+.+.+||+..+.+-
T Consensus 338 PiPe~~ryGS~aFPNFEqGV~f~REvA~q-RCqPAS~RLMDN~QF~fG 384 (613)
T KOG1233|consen 338 PIPEVKRYGSFAFPNFEQGVNFFREVAIQ-RCQPASLRLMDNDQFVFG 384 (613)
T ss_pred echhhhhcCccccCcHHHHHHHHHHHHHH-hcCchheeeecccceecc
Confidence 99999888889999999999999988654 336899999998766443
No 13
>TIGR01679 bact_FAD_ox FAD-linked oxidoreductase. This model represents a family of bacterial oxidoreductases with covalently linked FAD, closely related to two different eukaryotic oxidases, L-gulonolactone oxidase (EC 1.1.3.8) from rat and D-arabinono-1,4-lactone oxidase (EC 1.1.3.37) from Saccharomyces cerevisiae.
Probab=100.00 E-value=2.9e-32 Score=281.59 Aligned_cols=198 Identities=20% Similarity=0.314 Sum_probs=173.3
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~Ve 186 (423)
++|+..+...|.+|+.|+|++||+++|+.|++ |++++|+||++.+... .++++|||++||+|+++|+++++|+||
T Consensus 2 ~nW~~~~~~~p~~v~~P~s~~ev~~~v~~a~~---~v~~~G~Ghs~~~~~~--~~g~~idl~~l~~i~~~d~~~~~v~v~ 76 (419)
T TIGR01679 2 SNWSGEQVAAPSAIVRPTDEGELADVIAQAAK---PVRAVGSGHSFTDLAC--TDGTMISLTGLQGVVDVDQPTGLATVE 76 (419)
T ss_pred cCCCCCccCCCCeEECCCCHHHHHHHHHHhCC---CEEEEeCCCCCCCccc--CCCEEEEhhHcCCceeecCCCCEEEEc
Confidence 46877778899999999999999999999974 7999999999876543 578999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCC
Q 014546 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (423)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~ 266 (423)
||+++.+|.++|.++|+.+|..|+. +..||||+++++++|. ..+||.++|+|+++++|++||++++++.. .++
T Consensus 77 aG~~l~~l~~~L~~~G~~l~~~~~~-~~~tvGG~ia~~~hG~-g~~~G~~~d~V~~l~vV~a~G~v~~~~~~-----~~~ 149 (419)
T TIGR01679 77 AGTRLGALGPQLAQRGLGLENQGDI-DPQSIGGALGTATHGT-GVRFQALHARIVSLRLVTAGGKVLDLSEG-----DDQ 149 (419)
T ss_pred CCCCHHHHHHHHHHcCCccccCCCC-CCceeccceecCCCCC-CccCCchhhhEEEEEEEcCCCCEEEEcCC-----CCH
Confidence 9999999999999999999876654 4578999999999997 46999999999999999999999998754 468
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (423)
||+++++||+|+|||||++|||++|.+...... ...+++++.+.++++.+
T Consensus 150 dLf~a~~g~~G~lGVIt~vtl~~~p~~~~~~~~--~~~~~~~~~~~~~~~~~ 199 (419)
T TIGR01679 150 DMYLAARVSLGALGVISQVTLQTVALFRLRRRD--WRRPLAQTLERLDEFVD 199 (419)
T ss_pred HHHHHHHhCCCceEEEEEEEEEeecceEeEEEE--EecCHHHHHHHHHHHHh
Confidence 999999999999999999999999998765443 23466777777777643
No 14
>TIGR01677 pln_FAD_oxido plant-specific FAD-dependent oxidoreductase. This model represents an uncharacterized plant-specific family of FAD-dependent oxidoreductases. At least seven distinct members are found in Arabidopsis thaliana. The family shows considerable sequence similarity to three different enzymes of ascorbic acid biosynthesis: L-galactono-1,4-lactone dehydrogenase (EC 1.3.2.3) from higher plants, D-arabinono-1,4-lactone oxidase (EC 1.1.3.37 from Saccharomyces cerevisiae, and L-gulonolactone oxidase (EC 1.1.3.8) from mouse, as well as to a bacterial sorbitol oxidase. The class of compound acted on by members of this family is unknown.
Probab=99.98 E-value=1.9e-31 Score=282.45 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=176.9
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeC-CCccCCCCcccc--CCeEEEEcCCCCCeEEEeCCCC
Q 014546 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG-GNTGLVGGSVPV--FDEVIINMGSMNNIITFDKGSG 181 (423)
Q Consensus 105 y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~G-gGt~l~g~~~~~--~~gvvIdls~mn~I~~id~~~~ 181 (423)
+-++|+..+...|.+|++|+|++||+++|++|+++++||.++| +||++.+.+.+. +++++|||++||+|+++|.++.
T Consensus 20 ~w~nWag~~~~~p~~vv~P~s~eeV~~iV~~A~~~g~~v~v~GG~gHs~~~~a~t~~~~ggvvIdL~~Ln~il~iD~~~~ 99 (557)
T TIGR01677 20 AYGAFPDRSTCRAANVAYPKTEAELVSVVAAATAAGRKMKVVTRYSHSIPKLACPDGSDGALLISTKRLNHVVAVDATAM 99 (557)
T ss_pred chhhcCCcccCCCCEEEecCCHHHHHHHHHHHHHCCCeEEEEeCCCCCcCcccccCCCCCEEEEEcccCCCCEEEeCCCC
Confidence 4468999999999999999999999999999999999999995 688887655442 2469999999999889999999
Q ss_pred EEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCc-cccccccceEeEEEEEeCCC------cEEE
Q 014546 182 VLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL-VRYGSLHGNVLGLEAVLANG------DVID 254 (423)
Q Consensus 182 ~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~-~~yG~~~d~V~~levVl~dG------~iv~ 254 (423)
+|+||||+++.+|.++|.++|+.++..|.. ...||||++++|++|... .+||.++|+|+++++|++|| ++++
T Consensus 100 tVtV~AG~~l~~L~~~L~~~Glal~~~~~~-~~~TVGGaiatGthGs~~~~~~G~l~d~V~~l~vV~a~G~a~G~~~v~~ 178 (557)
T TIGR01677 100 TVTVESGMSLRELIVEAEKAGLALPYAPYW-WGLTVGGMMGTGAHGSSLWGKGSAVHDYVVGIRLVVPASAAEGFAKVRI 178 (557)
T ss_pred EEEECCCCcHHHHHHHHHHcCCEeccCCCC-CCeEeeEhhhCCCCCccccccccchhheEEEEEEEeCCCcccCcceEEE
Confidence 999999999999999999999999977654 457999999999999766 48899999999999999999 7887
Q ss_pred ccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH
Q 014546 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (423)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (423)
++.. .++||+++++|++|+|||||++|||++|.+.... ...+...+++.+.+.++.
T Consensus 179 ~s~~-----~~~dLf~a~rgslG~lGVVtevTL~~~P~~~~~~--~~~~~~~~~l~~~~~~~~ 234 (557)
T TIGR01677 179 LSEG-----DTPNEFNAAKVSLGVLGVISQVTLALQPMFKRSV--TYTMRDDSDFEDQFVTFG 234 (557)
T ss_pred eCCC-----CCHHHHHhhccCCCccEeeeEEEEEEEccccceE--EEEcCCHHHHHHHHHHhh
Confidence 7543 4568999999999999999999999999987333 345567777777666654
No 15
>PLN02465 L-galactono-1,4-lactone dehydrogenase
Probab=99.97 E-value=3.1e-29 Score=264.86 Aligned_cols=201 Identities=20% Similarity=0.296 Sum_probs=175.5
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~Ve 186 (423)
++|++.....|.+++.|+|++||+++|+.|+++++||.++|+||+.++... .++.+|||++||+|+++|.++.+|+|+
T Consensus 87 ~NWsg~~~~~p~~vv~P~S~eEV~~iV~~A~~~g~~VrvvGsGhS~~~l~~--td~glIdL~~l~~Il~vD~e~~~VtV~ 164 (573)
T PLN02465 87 SNWSGTHEVQTRRYHQPESLEELEDIVKEAHEKGRRIRPVGSGLSPNGLAF--SREGMVNLALMDKVLEVDKEKKRVTVQ 164 (573)
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCeee--CCCEEEECcCCCCcEEEeCCCCEEEEc
Confidence 488888899999999999999999999999999999999999999877655 355678999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCC
Q 014546 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (423)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~ 266 (423)
||+++.+|.++|.++|+.++..++ ....||||+++++++|.+ .+||.++|+|+++++|+++|++++++.. ..+
T Consensus 165 AG~~l~~L~~~L~~~GLal~n~g~-I~~~TIGGaIstGtHGtG-~~~g~i~d~V~~l~lVta~G~vv~~s~~-----~~p 237 (573)
T PLN02465 165 AGARVQQVVEALRPHGLTLQNYAS-IREQQIGGFIQVGAHGTG-ARIPPIDEQVVSMKLVTPAKGTIELSKE-----DDP 237 (573)
T ss_pred cCCCHHHHHHHHHHcCCEeccCCC-CCCeeecchhhCCCCCcC-CCcCcHhheEEEEEEEECCCCEEEECCC-----CCH
Confidence 999999999999999999886444 456789999999999974 5799999999999999999999998753 347
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKR 318 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (423)
||+++.+++.|+|||||+++|++.|.+......+ ..+++++.+.+.++.+
T Consensus 238 dLF~aar~glG~lGVIteVTLql~P~~~L~~~~~--~~~~~~~~~~~~~~~~ 287 (573)
T PLN02465 238 ELFRLARCGLGGLGVVAEVTLQCVPAHRLVEHTF--VSNRKEIKKNHKKWLS 287 (573)
T ss_pred HHHhHhhccCCCCcEEEEEEEEEEecCceEEEEE--EecHHHHHHHHHHHHH
Confidence 8999999999999999999999999998654332 2456777777777643
No 16
>PF01565 FAD_binding_4: FAD binding domain This is only a subset of the Pfam family; InterPro: IPR006094 Various enzymes use FAD as a co-factor, most of these enzymes are oxygen-dependent oxidoreductases, containing a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. One of the enzymes Vanillyl-alcohol oxidase (VAO, 1.1.3.38 from EC) has a solved structure, the alignment includes the FAD binding site, called the PP-loop, between residues 99-110 []. The FAD molecule is covalently bound in the known structure, however the residue that links to the FAD is not in the alignment. VAO catalyses the oxidation of a wide variety of substrates, ranging from aromatic amines to 4-alkylphenols. ; GO: 0008762 UDP-N-acetylmuramate dehydrogenase activity, 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZR6_A 3HSU_A 2AXR_A 3D2J_A 3D2H_A 3FW9_A 3FW8_A 3FW7_A 3GSY_A 3FWA_A ....
Probab=99.96 E-value=3e-29 Score=220.49 Aligned_cols=139 Identities=29% Similarity=0.524 Sum_probs=130.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~ 196 (423)
|.+|++|+|++||++++++|+++++|+.++|+||++.+.+. ..++++|||++||+|+++|+++.+++|+||++|.||++
T Consensus 1 P~~vv~P~s~~ev~~~v~~a~~~~~~v~~~g~G~~~~~~~~-~~~~ivi~~~~l~~i~~id~~~~~v~v~aG~~~~~l~~ 79 (139)
T PF01565_consen 1 PAAVVRPKSVEEVQAIVKFANENGVPVRVRGGGHSWTGQSS-DEGGIVIDMSRLNKIIEIDPENGTVTVGAGVTWGDLYE 79 (139)
T ss_dssp ESEEEEESSHHHHHHHHHHHHHTTSEEEEESSSTTSSSTTS-STTEEEEECTTCGCEEEEETTTTEEEEETTSBHHHHHH
T ss_pred CcEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCcccccc-cCCcEEEeeccccccccccccceeEEEeccccchhccc
Confidence 78999999999999999999999999999999999986665 47899999999999889999999999999999999999
Q ss_pred HHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEcc
Q 014546 197 FLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDML 256 (423)
Q Consensus 197 ~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~ 256 (423)
+|.++|+.+++.+++...+|+||++++|++|..+.+||.++|+|+++++|++||++++++
T Consensus 80 ~l~~~g~~~~~~~~~~~~~tvGG~i~~~~~g~~~~~~G~~~d~v~~~~~V~~~G~v~~~s 139 (139)
T PF01565_consen 80 ALAPRGLMLPVEPGSGIPGTVGGAIAGNGHGSGSRRYGTAADNVLSVEVVLADGEVVRCS 139 (139)
T ss_dssp HHHHHTEEESSGGGSTTTSBHHHHHHTT-EETTHHHHCBGGGGEEEEEEEETTSSEEEEE
T ss_pred ccccccccccccccccccceEchhhcCCCccccccccccHHHeEEEEEEEcCCCcEEEeC
Confidence 999999999988888778899999999999999999999999999999999999999863
No 17
>PRK13905 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=1e-25 Score=223.12 Aligned_cols=251 Identities=20% Similarity=0.268 Sum_probs=179.7
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCC-CCCeEEEeC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~-mn~I~~id~ 178 (423)
.++..|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.....+ .++++||+++ |+.| ++
T Consensus 17 ~~l~~~~---t~~igg~a~~vv~P~s~edv~~~v~~a~~~~~p~~v~GgGsnll~~d~g-~~gvvI~l~~~l~~i-~~-- 89 (298)
T PRK13905 17 EPLARYT---SFRVGGPADYLVEPADIEDLQEFLKLLKENNIPVTVLGNGSNLLVRDGG-IRGVVIRLGKGLNEI-EV-- 89 (298)
T ss_pred CCccccc---eeecCceEeEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCceEEecCCC-cceEEEEecCCcceE-Ee--
Confidence 4677776 5788999999999999999999999999999999999999998654332 2489999998 9987 44
Q ss_pred CCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCccccc-cccceEeEEEEEeCCCcEEEcc
Q 014546 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDML 256 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG-~~~d~V~~levVl~dG~iv~~~ 256 (423)
++.+++|+||++|.+|.++|.++|+. +...++.++ ||||++++|+|+ || .++|+|.++++|++||+++++.
T Consensus 90 ~~~~v~v~aG~~~~~L~~~l~~~Gl~gle~~~gipG--TVGGai~~NaG~-----~G~~~~d~v~~v~vv~~~G~~~~~~ 162 (298)
T PRK13905 90 EGNRITAGAGAPLIKLARFAAEAGLSGLEFAAGIPG--TVGGAVFMNAGA-----YGGETADVLESVEVLDRDGEIKTLS 162 (298)
T ss_pred cCCEEEEECCCcHHHHHHHHHHcCCCcchhccCCCc--chhHHHHHcCCc-----CceEhheeEEEEEEEeCCCCEEEEE
Confidence 45789999999999999999999994 444456655 699999999988 87 6999999999999999999975
Q ss_pred CCcccCCCCCCcccccccCCCC--eeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCC--Cce-EEEeeC
Q 014546 257 GTLRKDNTGYDLKHLFIGSEGS--LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGE--ILS-AFEFLD 331 (423)
Q Consensus 257 ~~~~k~~~G~dL~~l~~Gs~Gt--lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-a~E~~d 331 (423)
.. |+.+.++++.+. +||||+++|+++|..+ +.+.+.++.+.+.|+...+ .|+ ..=|.|
T Consensus 163 ~~--------e~~~~yR~s~~~~~~gII~~~~l~l~~~~~---------~~i~~~~~~~~~~R~~~~P~~~~s~Gs~FkN 225 (298)
T PRK13905 163 NE--------ELGFGYRHSALQEEGLIVLSATFQLEPGDK---------EEIKARMDELLARREATQPLEYPSAGSVFKN 225 (298)
T ss_pred HH--------HcCCcCccccCCCCCEEEEEEEEEEcCCCH---------HHHHHHHHHHHHHHHhcCCCCCCccceeeeC
Confidence 43 677788877644 7999999999999742 2344455555555543221 122 233444
Q ss_pred HH---HHHHHHhh-ccCCCC---CCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014546 332 NQ---SMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (423)
Q Consensus 332 ~~---~~~~~~~~-~~~~~~---~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~ 383 (423)
.. +=.++++. +.+.+. .+.+. -+-.+|-..+.+.+++.+.++.+.+.+.+
T Consensus 226 P~~~~ag~LIe~~GlkG~~~G~a~vs~~--hanfivN~g~at~~dv~~L~~~v~~~V~~ 282 (298)
T PRK13905 226 PPGHFAGKLIEEAGLKGYRIGGAQVSEK--HANFIINTGGATAADIEDLIEHVQKTVKE 282 (298)
T ss_pred CCCchHHHHHHHcCCCCCccCCEEEccc--cCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 43 23444432 111110 11112 23456677766665555545545454544
No 18
>PRK14652 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.93 E-value=7.5e-25 Score=216.96 Aligned_cols=272 Identities=19% Similarity=0.247 Sum_probs=188.6
Q ss_pred CCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc
Q 014546 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (423)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~ 157 (423)
.+.+++++|++.+... +..+ +++..|+ +.++++.|++++.|+|++||++++++|+++++|++++|+|||+.....
T Consensus 2 ~~~~~~~~~~~~~~~~-~~~~-~~l~~~t---t~~igg~a~~~v~p~~~edl~~~v~~a~~~~ip~~vlGgGSNllv~d~ 76 (302)
T PRK14652 2 VEATWRDEIARRVRGE-VLRD-APLAPRT---AVRVGGPADLLVRPADPDALSALLRAVRELGVPLSILGGGANTLVADA 76 (302)
T ss_pred chHHHHHHHHHhhccc-cccC-CCccccc---EeecCCcceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcceeecCC
Confidence 3557788999988765 4444 5788887 678999999999999999999999999999999999999999853221
Q ss_pred ccCCeEEEEcCC-CCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc
Q 014546 158 PVFDEVIINMGS-MNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (423)
Q Consensus 158 ~~~~gvvIdls~-mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~ 235 (423)
. .++++|++++ ++.+ . .++.+++|+||+.|.+|.+++.++|+. +.+..+.++ ||||++++|+|.. ||.
T Consensus 77 g-~~gvVI~l~~~~~~i-~--~~~~~v~v~AG~~~~~L~~~~~~~GL~GlE~l~gIPG--TvGGav~mNaGa~----gge 146 (302)
T PRK14652 77 G-VRGVVLRLPQDFPGE-S--TDGGRLVLGAGAPISRLPARAHAHGLVGMEFLAGIPG--TLGGAVAMNAGTK----LGE 146 (302)
T ss_pred C-EeeEEEEecCCcceE-E--ecCCEEEEECCCcHHHHHHHHHHcCCcccccccCCCc--chhHHHHHcCCCC----ceE
Confidence 1 1379999987 4444 3 345689999999999999999999997 554456655 6999999999853 788
Q ss_pred ccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHH
Q 014546 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 315 (423)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~ 315 (423)
++|+|.++++|++|| ..+.. ++..+|++.+.++++ + ||||+++|++.|.... ...+.++.+.+
T Consensus 147 i~d~v~~v~vv~~~G-~~~~~----~~e~~f~YR~s~~~~-~--~II~~a~~~L~~~~~~---------~i~~~~~~~~~ 209 (302)
T PRK14652 147 MKDVVTAVELATADG-AGFVP----AAALGYAYRTCRLPP-G--AVITRVEVRLRPGDVA---------ASEALMRADRE 209 (302)
T ss_pred hhheEEEEEEECCCC-cEEee----hhhcCcccceeccCC-C--eEEEEEEEEEecCCHH---------HHHHHHHHHHH
Confidence 999999999999999 44432 345677777777664 3 8999999999995432 23444555555
Q ss_pred HHHHcCC--CceE-EEeeCH---HHHHHHHhh-ccCCCC---CCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014546 316 AKRKLGE--ILSA-FEFLDN---QSMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (423)
Q Consensus 316 ~~~~~~~--~~~a-~E~~d~---~~~~~~~~~-~~~~~~---~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~ 383 (423)
.|+...+ .|++ .-|-|. .+=.++++. +.+.+. .+.+. -+-.+|-..+.+.+++.+.++.+.+.+.+
T Consensus 210 ~R~~~qP~~~psaGS~FkNP~~~~Ag~LIe~~GlkG~~~G~a~vS~k--HanfivN~g~ata~di~~Li~~v~~~V~~ 285 (302)
T PRK14652 210 RRRRTQPLDRPTFGSTFTNPPGDYAGRLVEAVGLKGHRVGGAIWSPV--HANFVTNLGGATARDVLALVRLARARVKE 285 (302)
T ss_pred HHHhcCCCCCCCccceeeCcCCccHHHHHHHcCCCCCccCCEEEccc--ccCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5543221 2322 333332 333455442 111111 11222 23456677776665555544444444544
No 19
>PRK12436 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=4.8e-24 Score=211.60 Aligned_cols=189 Identities=19% Similarity=0.332 Sum_probs=151.9
Q ss_pred HHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccC
Q 014546 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVF 160 (423)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~ 160 (423)
+++++|++++++..+..+ +++..|++ .++++.|+++++|.|++||++++++|+++++|++++|+|||+...... .
T Consensus 5 ~~~~~l~~~l~~~~~~~~-~~l~~~tt---~~igg~a~~vv~p~~~edv~~~l~~a~~~~ip~~v~GgGSNll~~d~g-~ 79 (305)
T PRK12436 5 EVYEYLSTVLPEGHVKQD-EMLKNHTH---IKVGGKADVFVAPTNYDEIQEVIKYANKYNIPVTFLGNGSNVIIKDGG-I 79 (305)
T ss_pred HHHHHHHHhcCcCceecC-CcchhccC---cccCceEEEEEecCCHHHHHHHHHHHHHcCCCEEEEcCCeEEEEeCCC-e
Confidence 456778888876556655 47888874 367899999999999999999999999999999999999999632221 1
Q ss_pred CeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccc
Q 014546 161 DEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHG 238 (423)
Q Consensus 161 ~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d 238 (423)
+|++|++++|+.+ +++ +.+++|+||+.+.+|.+++.++|+. +....+.+++ |||++.+|+|+ ||. +.|
T Consensus 80 ~GvvI~l~~l~~i-~~~--~~~v~v~aG~~~~~L~~~~~~~gl~Gle~~~giPGt--VGGav~~NAGa-----yG~~~~d 149 (305)
T PRK12436 80 RGITVSLIHITGV-TVT--GTTIVAQCGAAIIDVSRIALDHNLTGLEFACGIPGS--VGGALYMNAGA-----YGGEISF 149 (305)
T ss_pred eEEEEEeCCcCcE-EEe--CCEEEEEeCCcHHHHHHHHHHcCCccchhhcCCccc--hhHHHHhcCcc-----chhehhe
Confidence 3899999989987 665 4689999999999999999999986 3333455554 99999999998 885 778
Q ss_pred eEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccC--CCCeeEEEEEEEEcccC
Q 014546 239 NVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGS--EGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 239 ~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs--~GtlGIIt~~tl~l~p~ 292 (423)
.+.+++|+++||++++.... ++.+.++.| .....||++++|++.|.
T Consensus 150 vl~~v~vv~~~G~v~~~~~~--------e~~f~YR~s~~~~~~~iil~a~~~l~~~ 197 (305)
T PRK12436 150 VLTEAVVMTGDGELRTLTKE--------AFEFGYRKSVFANNHYIILEARFELEEG 197 (305)
T ss_pred eeeEEEEEeCCCCEEEEEHH--------HhcCcCCCCcCCCCCEEEEEEEEEEcCC
Confidence 88899999999999998765 344444444 22347999999999875
No 20
>PRK13906 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.92 E-value=7.4e-24 Score=210.32 Aligned_cols=193 Identities=18% Similarity=0.307 Sum_probs=154.7
Q ss_pred CHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccc
Q 014546 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP 158 (423)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~ 158 (423)
+++++++|++++++..+..+ +++..|+ +.+.++.|++++.|+|++||++++++|+++++|++++|+|||+......
T Consensus 3 ~~~~~~~l~~~~~~~~v~~~-~~L~~~t---t~~iGG~A~~~v~p~~~edv~~~v~~a~~~~ip~~vlGgGSNll~~d~g 78 (307)
T PRK13906 3 NKDIYQALQQLIPNEKIKVD-EPLKRYT---YTKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREGG 78 (307)
T ss_pred hHHHHHHHHHhcCCCeeecC-Cccccce---EcCcCceeEEEEEcCCHHHHHHHHHHHHHcCCCEEEEcCceeEeecCCC
Confidence 44578899999976567766 6788887 4467789999999999999999999999999999999999998643322
Q ss_pred cCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCccccc-cc
Q 014546 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SL 236 (423)
Q Consensus 159 ~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG-~~ 236 (423)
.+|++|++++|+++ +++. .+++|+||+.+.+|.+++.++|+. +....++++ ||||++.+|+|+ || .+
T Consensus 79 -~~GvvI~l~~l~~i-~~~~--~~v~v~aG~~~~~l~~~~~~~Gl~GlE~~~gIPG--tVGGav~mNaGa-----yGg~i 147 (307)
T PRK13906 79 -IRGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG--SIGGAVYMNAGA-----YGGEV 147 (307)
T ss_pred -cceEEEEecCccce-EEeC--CEEEEECCCcHHHHHHHHHHcCCccchhhcCCCc--cHhHHHHhhCCc-----chhhh
Confidence 24899999899998 6653 589999999999999999999997 333346665 599999999988 75 79
Q ss_pred cceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccC
Q 014546 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 237 ~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~ 292 (423)
+|+|+++++|++||++++..... ...+|.-.. |. ..--||++++|++.|.
T Consensus 148 ~D~l~~v~vv~~~G~~~~~~~~e--~~f~YR~S~-~~---~~~~ii~~~~~~l~~~ 197 (307)
T PRK13906 148 KDCIDYALCVNEQGSLIKLTTKE--LELDYRNSI-IQ---KEHLVVLEAAFTLAPG 197 (307)
T ss_pred hhheeEEEEEeCCCCEEEEEHHH--ccCcCCccc-CC---CCCEEEEEEEEEECCC
Confidence 99999999999999999987652 334443211 11 1125899999999873
No 21
>PRK14653 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.89 E-value=1.4e-22 Score=199.87 Aligned_cols=190 Identities=21% Similarity=0.328 Sum_probs=159.0
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~ 159 (423)
..+++.|.+-.+. +.. .+++..|+ +.++++.+++++.|+|++|+++++++|++ ++|+.+.|+|||+...+.+.
T Consensus 3 ~~~~~~~~~~~~~--~~~-~~~L~~~t---t~~iGG~A~~~v~p~s~eel~~~~~~~~~-~~p~~vlG~GSNlLv~d~g~ 75 (297)
T PRK14653 3 RKIIETLLKYGND--VFI-NEEMKCHV---SFKIGGPVPLFAIPNSTNGFIETINLLKE-GIEVKILGNGTNVLPKDEPM 75 (297)
T ss_pred hHHHHHHHHhcCe--ecc-CCcccccC---EeeeCcEEEEEEecCCHHHHHHHHHHHhc-CCCEEEEcCCeeEEEecCCc
Confidence 4567777766652 443 46788887 67899999999999999999999999999 99999999999998877664
Q ss_pred CCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-cc
Q 014546 160 FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LH 237 (423)
Q Consensus 160 ~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~ 237 (423)
+|+||.+.+|+.+ +++. ..++|+||+.|.+|.+++.++|+. +....+++++ |||++.||+|+ ||. ++
T Consensus 76 -~gvVI~l~~~~~i-~i~~--~~v~v~AG~~l~~L~~~~~~~GL~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~ 144 (297)
T PRK14653 76 -DFVVVSTERLDDI-FVDN--DKIICESGLSLKKLCLVAAKNGLSGFENAYGIPGS--VGGAVYMNAGA-----YGWETA 144 (297)
T ss_pred -cEEEEEeCCcCce-EEeC--CEEEEeCCCcHHHHHHHHHHCCCcchhhhcCCchh--HHHHHHHhCcc-----Cchhhh
Confidence 4899999789998 7763 579999999999999999999996 5555555554 99999999999 998 99
Q ss_pred ceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCC
Q 014546 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL 293 (423)
Q Consensus 238 d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p 293 (423)
|+|.++++++ +|++++... ...+|++.+...++++.+ |||+++|++.|.+
T Consensus 145 d~l~~V~~~d-~g~v~~~~~----~e~~f~YR~S~~~~~~~~-iI~~a~f~L~~~~ 194 (297)
T PRK14653 145 ENIVEVVAYD-GKKIIRLGK----NEIKFSYRNSIFKEEKDL-IILRVTFKLKKGN 194 (297)
T ss_pred eeEEEEEEEC-CCEEEEEch----hhccccCccccCCCCCcE-EEEEEEEEEecCC
Confidence 9999999999 788887754 346667777777777665 9999999999853
No 22
>TIGR00179 murB UDP-N-acetylenolpyruvoylglucosamine reductase. This model describes MurB, UDP-N-acetylenolpyruvoylglucosamine reductase, which is also called UDP-N-acetylmuramate dehydrogenase. It is part of the pathway for the biosynthesis of the UDP-N-acetylmuramoyl-pentapeptide that is a precursor of bacterial peptidoglycan.
Probab=99.89 E-value=1.9e-22 Score=198.38 Aligned_cols=167 Identities=22% Similarity=0.291 Sum_probs=135.1
Q ss_pred ccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccc
Q 014546 110 MRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGC 189 (423)
Q Consensus 110 ~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv 189 (423)
+.++++.|++++.|+|++||++++++|+++++|++++|+|||+...+.. .++++|++++|+++ .+++ +.+++|+||+
T Consensus 6 t~~igg~a~~~v~p~s~edl~~~l~~a~~~~~p~~vlGgGSNll~~d~~-~~gvvi~l~~~~~~-~~~~-~~~v~v~aG~ 82 (284)
T TIGR00179 6 TYKIGGNARHIVCPESIEQLVNVLDNAKEEDQPLLILGEGSNLLILDDG-RGGVIINLGKGIDI-EDDE-GEYVHVGGGE 82 (284)
T ss_pred eeecCceeeEEEEeCCHHHHHHHHHHHHHcCCCEEEEecceEEEEccCC-cCeEEEECCCCceE-EEec-CCEEEEEcCC
Confidence 4678999999999999999999999999999999999999999876543 56899999999988 5666 5789999999
Q ss_pred cHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCCCcEEEccCCcccCCCCCC
Q 014546 190 ILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYD 267 (423)
Q Consensus 190 ~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~~~~~k~~~G~d 267 (423)
.|.+|.+++.++|+. +...++.++ ||||++++|+|+ ||. +.|.|+++++|++||++++..... ...+|.
T Consensus 83 ~~~~l~~~~~~~Gl~GlE~l~giPG--tvGGai~mNAGa-----yG~~i~d~l~~v~vv~~~G~~~~~~~~~--~~f~YR 153 (284)
T TIGR00179 83 NWHKLVKYALKNGLSGLEFLAGIPG--TVGGAVIMNAGA-----YGVEISEVLVYATILLATGKTEWLTNEQ--LGFGYR 153 (284)
T ss_pred cHHHHHHHHHHCCCcccccCCCCCc--hHHHHHHHhccc-----chhehhheEEEEEEEeCCCCEEEEEHHH--ccccCC
Confidence 999999999999995 444445555 499999999998 888 556889999999999999887642 223343
Q ss_pred cccccccCCCCeeEEEEEEEEccc
Q 014546 268 LKHLFIGSEGSLGIVTKVSIHTPP 291 (423)
Q Consensus 268 L~~l~~Gs~GtlGIIt~~tl~l~p 291 (423)
-.. |.. .. ..||++++|++.+
T Consensus 154 ~S~-f~~-~~-~~iil~a~~~l~~ 174 (284)
T TIGR00179 154 TSI-FQH-KY-VGLVLKAEFQLTL 174 (284)
T ss_pred ccc-cCC-CC-cEEEEEEEEEecc
Confidence 211 111 11 3699999999844
No 23
>KOG4730 consensus D-arabinono-1, 4-lactone oxidase [Defense mechanisms]
Probab=99.87 E-value=9.4e-22 Score=197.40 Aligned_cols=181 Identities=18% Similarity=0.212 Sum_probs=151.7
Q ss_pred cccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEcccc
Q 014546 111 RKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (423)
Q Consensus 111 ~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~ 190 (423)
.+..+++.-|-+|+|++|+.++|+.|++++..+++.|.||+..+-.+ .+|.+|++.+||+++++|++..++|||+|++
T Consensus 44 dr~~c~aanv~yP~teaeL~~lVa~A~~a~~kirvVg~gHSp~~l~c--tdg~lisl~~lnkVv~~dpe~~tvTV~aGir 121 (518)
T KOG4730|consen 44 DRSTCKAANVNYPKTEAELVELVAAATEAGKKIRVVGSGHSPSKLVC--TDGLLISLDKLNKVVEFDPELKTVTVQAGIR 121 (518)
T ss_pred chhhhhhcccCCCCCHHHHHHHHHHHHHcCceEEEecccCCCCccee--ccccEEEhhhhccceeeCchhceEEeccCcC
Confidence 34455566788899999999999999999999999999999987655 5779999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCccc
Q 014546 191 LENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKH 270 (423)
Q Consensus 191 ~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~ 270 (423)
+.||++++++.|+.+|..|... ..+|||++++++||....-++.....+.-..++.++|.++.+++. ..+++++
T Consensus 122 lrQLie~~~~~GlsL~~~~si~-e~sVgGii~TGaHGSS~~vH~~v~~i~~v~~~~~~~G~v~~Ls~e-----~dpe~F~ 195 (518)
T KOG4730|consen 122 LRQLIEELAKLGLSLPNAPSIS-EQSVGGIISTGAHGSSLWVHDYVSEIISVSPITPADGFVVVLSEE-----KDPELFN 195 (518)
T ss_pred HHHHHHHHHhcCccccCCCcee-cceeeeEEecccCCCccccCcccceeEEEeeeccCCceEEEeccc-----CCHHHHh
Confidence 9999999999999999777655 469999999999997444344444444444455579998887654 4569999
Q ss_pred ccccCCCCeeEEEEEEEEcccCCceeeEE
Q 014546 271 LFIGSEGSLGIVTKVSIHTPPKLSSVNLA 299 (423)
Q Consensus 271 l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~ 299 (423)
+..-|.|.||||.++||++.|.-+...+.
T Consensus 196 AAkvSLG~LGVIs~VTl~~vp~Fk~s~t~ 224 (518)
T KOG4730|consen 196 AAKVSLGVLGVISQVTLSVVPAFKRSLTY 224 (518)
T ss_pred hhhhcccceeEEEEEEEEEEecceeeeEE
Confidence 99999999999999999999987755443
No 24
>PRK13903 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.87 E-value=3.2e-21 Score=194.73 Aligned_cols=173 Identities=21% Similarity=0.309 Sum_probs=147.2
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~ 179 (423)
.++..|+ +.++++.|++++.|+|++|+++++++|+++++|+.++|+|||+.-..-. .+|+||+++ ++.+ +++.+
T Consensus 19 ~~L~~~t---t~~iGg~A~~~~~p~s~edl~~~l~~a~~~~~p~~vlGgGSNlLv~D~g-~~GvVI~l~-~~~i-~i~~~ 92 (363)
T PRK13903 19 VPLAPLT---TLRVGGPARRLVTCTSTEELVAAVRELDAAGEPLLVLGGGSNLVIADDG-FDGTVVRVA-TRGV-TVDCG 92 (363)
T ss_pred CCccccc---EeecCccceEEEEeCCHHHHHHHHHHHHHCCCCEEEEeCCeeEeECCCC-ccEEEEEeC-CCcE-EEeCC
Confidence 4677777 6789999999999999999999999999999999999999998533211 247999987 5887 67766
Q ss_pred CCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCC-CcEEEcc
Q 014546 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVIDML 256 (423)
Q Consensus 180 ~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~d-G~iv~~~ 256 (423)
+.+++|+||+.|.+|.+++.++|+. +....+++++ |||++.||+|+ ||. +.|.|.++++++.+ |++++..
T Consensus 93 ~~~v~vgAG~~~~~l~~~a~~~GL~GlE~laGIPGT--VGGAv~mNaGa-----yG~ei~D~l~sV~vvd~~~G~~~~~~ 165 (363)
T PRK13903 93 GGLVRAEAGAVWDDVVARTVEAGLGGLECLSGIPGS--AGATPVQNVGA-----YGQEVSDTITRVRLLDRRTGEVRWVP 165 (363)
T ss_pred CCEEEEEcCCCHHHHHHHHHHcCCccccccCCCCcc--hhhHhhcCCCh-----hHHHHhhhEeEEEEEECCCCEEEEEE
Confidence 7799999999999999999999998 7766777776 99999999999 887 89999999999965 9999876
Q ss_pred CCcccCCCCCCcccccccC---CCCeeEEEEEEEEcccCC
Q 014546 257 GTLRKDNTGYDLKHLFIGS---EGSLGIVTKVSIHTPPKL 293 (423)
Q Consensus 257 ~~~~k~~~G~dL~~l~~Gs---~GtlGIIt~~tl~l~p~p 293 (423)
.. |+.+.+++| ++..+|||+++|++.|..
T Consensus 166 ~~--------el~f~YR~S~f~~~~~~IIl~a~f~L~~~~ 197 (363)
T PRK13903 166 AA--------DLGFGYRTSVLKHSDRAVVLEVEFQLDPSG 197 (363)
T ss_pred HH--------HcceeccccccCCCCCEEEEEEEEEEEcCC
Confidence 43 777788877 234789999999999873
No 25
>PRK14649 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.84 E-value=2.7e-20 Score=183.99 Aligned_cols=260 Identities=15% Similarity=0.184 Sum_probs=177.2
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCC-CeEEEeC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMN-NIITFDK 178 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn-~I~~id~ 178 (423)
.++..|+ +.++++.+++++.|+|++|+++++++|+++++|+.++|+|||+...+.. .+|++|++++++ ++ ..+.
T Consensus 7 ~~L~~~t---t~~iGg~a~~~v~p~~~~dl~~~l~~~~~~~ip~~vlG~GSNlL~~d~g-~~GvVI~l~~~~~~i-~~~~ 81 (295)
T PRK14649 7 EPLAPYT---SWRIGGPARYFVEPTTPDEAIAAAAWAEQRQLPLFWLGGGSNLLVRDEG-FDGLVARYRGQRWEL-HEHG 81 (295)
T ss_pred Ccccccc---EeeeCceeeEEEEcCCHHHHHHHHHHHHHCCCCEEEEecceeEEEeCCC-cCeEEEEecCCCcEE-EEeC
Confidence 4567776 6789999999999999999999999999999999999999999766543 458999998754 55 4555
Q ss_pred CCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccC
Q 014546 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLG 257 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~ 257 (423)
++.+++|+||+.|.+|.+++.++|+. +.+..+++| ||||++.||+|.. ++.+.|+|.++++++.+|++++...
T Consensus 82 ~~~~v~v~AG~~~~~l~~~~~~~GL~GlE~l~GIPG--TvGGa~~mNaGay----g~ei~d~l~~V~~~~~~g~~~~~~~ 155 (295)
T PRK14649 82 DTAEVWVEAGAPMAGTARRLAAQGWAGLEWAEGLPG--TIGGAIYGNAGCY----GGDTATVLIRAWLLLNGSECVEWSV 155 (295)
T ss_pred CcEEEEEEcCCcHHHHHHHHHHcCCccccccCCCCc--chhHHHHhhcccc----ceEhheeEEEEEEEeCCCCEEEEeH
Confidence 55589999999999999999999999 888888888 5999999999983 3459999999999999999998765
Q ss_pred CcccCCCCCCcccccccC-CCC----eeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHc-CCCceE-EEee
Q 014546 258 TLRKDNTGYDLKHLFIGS-EGS----LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKL-GEILSA-FEFL 330 (423)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs-~Gt----lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~a-~E~~ 330 (423)
. ....||.-. .|... .+. --||++++|++.|..+ .++.+.++.+...|+.. ...|++ .-|-
T Consensus 156 ~--el~f~YR~S-~~~~~~~~~~~~~~~ii~~~~~~l~~~~~---------~~i~~~~~~~~~~R~~kqP~~~saGS~Fk 223 (295)
T PRK14649 156 H--DFAYGYRTS-VLKQLRADGITWRPPLVLAARFRLHRDDP---------TALAARMEAIAAERKQKTPAGSSCGSVFK 223 (295)
T ss_pred H--HcCccccee-ecccccccccccCCeEEEEEEEEECCCCH---------HHHHHHHHHHHHHHHHcCcCCCCeEEEEe
Confidence 4 222333211 11110 011 1389999999988633 12334444555444332 223443 4444
Q ss_pred CHH---HHHHHHhh-ccCCCC---CCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhhC
Q 014546 331 DNQ---SMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEG 384 (423)
Q Consensus 331 d~~---~~~~~~~~-~~~~~~---~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~ 384 (423)
+.. +=.++++. +.+.+. .+.+. -+-.+|-..+.+.+++.+.++.+.+.+.+.
T Consensus 224 NP~~~~Ag~LIe~~GlKG~~~G~a~vS~k--HanfivN~g~Ata~di~~Li~~v~~~V~~~ 282 (295)
T PRK14649 224 NPPGDSAGRLIEAAGLKGTRIGDAEIATR--HANYIINLGGARAADILRLIDLARTRVLAQ 282 (295)
T ss_pred CCCcccHHHHHHHcCCCCCcccCEEEccc--cCcEEEECCCCCHHHHHHHHHHHHHHHHHH
Confidence 333 33455442 111110 11122 234566777666655555555554555443
No 26
>PRK14650 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.81 E-value=1.9e-18 Score=170.43 Aligned_cols=261 Identities=18% Similarity=0.242 Sum_probs=179.8
Q ss_pred CcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCC
Q 014546 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNN 172 (423)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~ 172 (423)
-++.....++..|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+...+.+..++++|.+.+|+.
T Consensus 12 ~~~~~~~~~L~~~t---t~~iGG~A~~~~~p~~~~eL~~~l~~~~~~~~p~~vlG~GSNlLv~D~g~~~g~vi~~~~~~~ 88 (302)
T PRK14650 12 INIKPQTKNLANYT---TYKIGGISKLFLTPKTIKDAEHIFKAAIEEKIKIFILGGGSNILINDEEEIDFPIIYTGHLNK 88 (302)
T ss_pred cCCCCCCccccccc---eeeeCcEEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEECCCccceEEEEECCcCc
Confidence 34555556788887 678999999999999999999999999999999999999999865443323478888867988
Q ss_pred eEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCCC
Q 014546 173 IITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANG 250 (423)
Q Consensus 173 I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG 250 (423)
+ +++. ..++|+||+.|.+|.+++.++|+. +....++||+ |||++.||+|. ||. +.|.|.++++++.+|
T Consensus 89 i-~~~~--~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNAGa-----yG~ei~d~l~sV~~~d~~g 158 (302)
T PRK14650 89 I-EIHD--NQIVAECGTNFEDLCKFALQNELSGLEFIYGLPGT--LGGAIWMNARC-----FGNEISEILDKITFIDEKG 158 (302)
T ss_pred E-EEeC--CEEEEEeCCcHHHHHHHHHHcCCchhhhhcCCCcc--hhHHHHhhCCc-----cccchheeEEEEEEEECCC
Confidence 8 6653 469999999999999999999998 8877788876 99999999998 886 999999999999999
Q ss_pred cEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCC--CceE-E
Q 014546 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGE--ILSA-F 327 (423)
Q Consensus 251 ~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~a-~ 327 (423)
++.+.... ....+|.-.. |. ..-.||++++|++.|.++. +..+.++.+...|....+ .|+| .
T Consensus 159 ~~~~~~~~--e~~f~YR~S~-f~---~~~~iIl~a~f~L~~~~~~---------~i~~~~~~~~~~R~~kqP~~~psaGS 223 (302)
T PRK14650 159 KTICKKFK--KEEFKYKISP-FQ---NKNTFILKATLNLKKGNKK---------HIEEIMKQNKQIRINKGHYLFPSSGS 223 (302)
T ss_pred CEEEEEHH--HcCccccccc-CC---CCCEEEEEEEEEEcCCCHH---------HHHHHHHHHHHHHhcCCcCCCCCccc
Confidence 99886644 2334443211 11 1125899999999886432 234444454444443221 1222 3
Q ss_pred EeeCHH-----HHHHHHhh-ccCCCC---CCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014546 328 EFLDNQ-----SMDLVLTY-LEGVRN---PFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (423)
Q Consensus 328 E~~d~~-----~~~~~~~~-~~~~~~---~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~ 383 (423)
-|-+.. +=.++++. +.+.+. .+.+. -+-.+|-..+.+.+++.+.++.+.+.+.+
T Consensus 224 ~FKNP~~~~~~Ag~LIe~aGlKG~riG~A~VS~k--HanfIVN~G~Ata~Dil~Li~~v~~~V~~ 286 (302)
T PRK14650 224 TFKNNKAFLKPTGQIIEECKLKGLSIGGATVSHY--HGNFIININNATSKDIKTLIEKVKTEVQI 286 (302)
T ss_pred ceECCCCCccchHHHHHHcCCCCCccCCEEEccc--cccEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 333332 22445442 111111 11222 23456677766665555555555455544
No 27
>COG0812 MurB UDP-N-acetylmuramate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=99.78 E-value=5.2e-18 Score=165.28 Aligned_cols=175 Identities=25% Similarity=0.392 Sum_probs=145.8
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~ 179 (423)
.++..|+ +.++++.++.++.|++.+|+.++++++.+.++|+.+.|+|+|+.-..-. -++++|.+.+++.+ +++.+
T Consensus 7 ~~L~~~t---tfriGg~A~~~~~~~~~e~l~~~~~~~~~~~~p~~ilG~GSNlLv~d~g-~~gvvi~~~~~~~~-~~~~~ 81 (291)
T COG0812 7 VPLKRYT---TFRIGGPAEVLVEPRDIEELKAALKYAKAEDLPVLILGGGSNLLVRDGG-IGGVVIKLGKLNFI-EIEGD 81 (291)
T ss_pred Cccccce---eEecCcceeEEEecCCHHHHHHHHHhhhhcCCCEEEEecCceEEEecCC-CceEEEEcccccce-eeecc
Confidence 3467777 5789999999999999999999999999999999999999997543332 35889999888887 77777
Q ss_pred CCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCCCcEEEccC
Q 014546 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (423)
Q Consensus 180 ~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~~ 257 (423)
+..+++++|+.|.+|.+++.++|+. |....++||+ |||++.||+|. ||. ++|.+.++++++.+|++.+...
T Consensus 82 ~~~i~a~aG~~~~~l~~~~~~~gl~GlE~l~gIPGs--vGgav~mNaGA-----yG~Ei~d~~~~v~~ld~~G~~~~l~~ 154 (291)
T COG0812 82 DGLIEAGAGAPWHDLVRFALENGLSGLEFLAGIPGS--VGGAVIMNAGA-----YGVEISDVLVSVEVLDRDGEVRWLSA 154 (291)
T ss_pred CCeEEEccCCcHHHHHHHHHHcCCcchhhhcCCCcc--cchhhhccCcc-----cccchheeEEEEEEEcCCCCEEEEEH
Confidence 7799999999999999999999998 8877888876 99999999998 888 9999999999999999999876
Q ss_pred CcccCCCCCCcccccccCCCCeeEEEEEEEEcccC
Q 014546 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~ 292 (423)
.. ...||. +-.. .....||++++|++.|-
T Consensus 155 ~e--l~f~YR--~S~f--~~~~~vvl~v~f~L~~~ 183 (291)
T COG0812 155 EE--LGFGYR--TSPF--KKEYLVVLSVEFKLTKG 183 (291)
T ss_pred HH--hCcccc--cCcC--CCCCEEEEEEEEEeCCC
Confidence 52 223332 1111 11228999999999995
No 28
>PRK00046 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=3.2e-18 Score=171.12 Aligned_cols=176 Identities=19% Similarity=0.207 Sum_probs=141.5
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEe-C
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD-K 178 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id-~ 178 (423)
.++..|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|||+.... . .+|++|.+ +++.+ +++ .
T Consensus 7 ~~L~~~t---t~riGG~A~~~~~p~~~~el~~~~~~~~~~~~p~~vlG~GSNlLv~D-~-~~g~vI~~-~~~~~-~~~~~ 79 (334)
T PRK00046 7 HSLKPLN---TFGIDARARHLVEAESEEQLLEALADARAAGLPVLVLGGGSNVLFTE-D-FDGTVLLN-RIKGI-EVLSE 79 (334)
T ss_pred Ccccccc---eeccCcEEeEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceEEEEECC-C-CCEEEEEe-cCCce-EEEec
Confidence 3566777 67899999999999999999999999999999999999999997766 4 56888887 58888 663 2
Q ss_pred CC--CEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCC-CcEE
Q 014546 179 GS--GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLAN-GDVI 253 (423)
Q Consensus 179 ~~--~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~d-G~iv 253 (423)
++ ..++|+||+.|.+|.+++.++|+. +....+++|+ |||++.||+|. ||. +.|.|.++++++.+ |+++
T Consensus 80 ~~~~~~v~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~v~d~~~g~~~ 152 (334)
T PRK00046 80 DDDAWYLHVGAGENWHDLVLWTLQQGMPGLENLALIPGT--VGAAPIQNIGA-----YGVELKDVCDYVEALDLATGEFV 152 (334)
T ss_pred CCCeEEEEEEcCCcHHHHHHHHHHcCchhhHHhcCCCcc--hhHHHHhcCCc-----CcccHheeEEEEEEEECCCCcEE
Confidence 22 279999999999999999999998 8877788876 99999999998 886 99999999999987 9998
Q ss_pred EccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccC
Q 014546 254 DMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 254 ~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~ 292 (423)
+..... ...+|.-.. |....-.--||++++|++.|-
T Consensus 153 ~~~~~e--~~f~YR~S~-f~~~~~~~~iVl~a~f~L~~~ 188 (334)
T PRK00046 153 RLSAAE--CRFGYRDSI-FKHEYPDRYAITAVGFRLPKQ 188 (334)
T ss_pred EEEHHH--cCccccccc-CCCCCcCCEEEEEEEEEecCC
Confidence 876542 223333211 111000125899999999885
No 29
>PRK14648 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.76 E-value=8.1e-17 Score=161.21 Aligned_cols=142 Identities=15% Similarity=0.295 Sum_probs=121.3
Q ss_pred cEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCe
Q 014546 94 SVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNI 173 (423)
Q Consensus 94 ~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I 173 (423)
+++....++..|+ +.++++.+++++.|+|.+|+++++++|+++++|+.+.|+|+|+...+.+ .+|+||.+.+|+.+
T Consensus 10 ~~~~~~~~La~~t---T~rIGG~A~~~~~p~s~~el~~~l~~~~~~~~p~~iLG~GSNlL~~D~g-~~G~VI~l~~~~~i 85 (354)
T PRK14648 10 RITRRNVPLAERC---SFRIGGAAQFWAEPRSCTQLRALIEEAQRARIPLSLIGGGSNVLIADEG-VPGLMLSLRRFRSL 85 (354)
T ss_pred eeeecCCCccccc---eeeeCcEEEEEEeeCCHHHHHHHHHHHHHcCCCEEEEeceeEEEEeCCC-ccEEEEEeCCcCce
Confidence 3444456788887 6789999999999999999999999999999999999999998665543 35889988778887
Q ss_pred EEE---eCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEe
Q 014546 174 ITF---DKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVL 247 (423)
Q Consensus 174 ~~i---d~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl 247 (423)
++ +.+...++|+||+.|.+|.+++.++|+. +....++||+ |||++.||+|. ||. +.|.|.++++++
T Consensus 86 -~i~~~~~~~~~v~agAG~~~~~Lv~~~~~~gl~GlE~laGIPGT--VGGAv~mNAGA-----yG~ei~d~l~~V~v~d 156 (354)
T PRK14648 86 -HTQTQRDGSVLVHAGAGLPVAALLAFCAHHALRGLETFAGLPGS--VGGAAYMNARC-----YGRAIADCFHSARTLV 156 (354)
T ss_pred -EEeeccCCcEEEEEEeCCcHHHHHHHHHHcCCcchhhhcCCCcc--hhhHhhhcCCc-----cceEhhheEEEEEEEe
Confidence 54 2222479999999999999999999998 8877788876 99999999998 886 999999999993
No 30
>PRK14651 UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.64 E-value=3.8e-15 Score=145.18 Aligned_cols=161 Identities=20% Similarity=0.222 Sum_probs=127.0
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCC-CCCeEEEeC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS-MNNIITFDK 178 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~-mn~I~~id~ 178 (423)
.++..|+ +.++++++++++ |.|.+|+++++ ++|+.+.|+|||+.-.+.. .++++|.+.+ ++.+ +++
T Consensus 7 ~~L~~~t---t~riGG~A~~~~-p~~~~~l~~~~------~~p~~vlG~GSNlL~~D~g-~~g~vI~l~~~~~~~-~~~- 73 (273)
T PRK14651 7 VPLARYT---TLGVGGPAELWT-VETHEQLAEAT------EAPYRVLGGGSNLLVSDAG-VPERVIRLGGEFAEW-DLD- 73 (273)
T ss_pred Ccccccc---EeecCceEEEEe-cCCHHHHHHHH------CCCeEEEeceeEEEEcCCC-cceEEEEECCcceeE-eEC-
Confidence 3567776 578999999999 99999999988 5899999999998654432 3478888765 5654 443
Q ss_pred CCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCCCcEEEcc
Q 014546 179 GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDML 256 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~ 256 (423)
+ +|+||+.|.+|.+++.++|+. +....+++++ |||++.||+|. ||. +.|.|.++++++ +|++.+..
T Consensus 74 -~---~a~AG~~~~~l~~~~~~~gl~GlE~l~gIPGT--VGGAv~mNaGa-----yG~ei~d~l~~V~~~~-~g~~~~~~ 141 (273)
T PRK14651 74 -G---WVGGGVPLPGLVRRAARLGLSGLEGLVGIPAQ--VGGAVKMNAGT-----RFGEMADALHTVEIVH-DGGFHQYS 141 (273)
T ss_pred -C---EEECCCcHHHHHHHHHHCCCcchhhhcCCCcc--hhhHHHhhCCc-----cccChheeEEEEEEEE-CCCEEEEE
Confidence 2 699999999999999999998 8877788876 99999999998 886 999999999997 89999876
Q ss_pred CCcccCCCCCCcccccccCCCCeeEEEEEEEEcccC
Q 014546 257 GTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 257 ~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~ 292 (423)
... ...+|.-.. |. . --||++++|++.|.
T Consensus 142 ~~e--~~f~YR~S~-~~---~-~~iIl~a~f~l~~~ 170 (273)
T PRK14651 142 PDE--LGFGYRHSG-LP---P-GHVVTRVRLKLRPS 170 (273)
T ss_pred HHH--ccccccccC-CC---C-CEEEEEEEEEECCC
Confidence 542 233343211 11 1 25899999999885
No 31
>KOG1262 consensus FAD-binding protein DIMINUTO [General function prediction only]
Probab=99.61 E-value=1.2e-15 Score=151.07 Aligned_cols=147 Identities=19% Similarity=0.280 Sum_probs=130.5
Q ss_pred EEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEE
Q 014546 165 INMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLE 244 (423)
Q Consensus 165 Idls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~le 244 (423)
|++..+..|+++|.++.+|+|||+|+.+|+.++|-+.|+++|+.|.. +..|+||.|.+-+.-..|.+||...+.+.+.|
T Consensus 106 v~id~l~dILeld~ekmtvrvEP~Vtmgqis~~lip~g~tLaV~~El-dDlTvGGLinG~Gies~ShkyGlfq~~~~aYE 184 (543)
T KOG1262|consen 106 VPIDELHDILELDEEKMTVRVEPLVTMGQISKFLIPKGYTLAVLPEL-DDLTVGGLINGVGIESSSHKYGLFQHICTAYE 184 (543)
T ss_pred CCHHHHhHHHhcchhcceEEecCCccHHHHHHHhccCCceeeeeccc-ccceecceeeecccccccchhhhHHhhhheeE
Confidence 44556778889999999999999999999999999999999988874 67899999976666667899999999999999
Q ss_pred EEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 245 AVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 245 vVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
||++||+++++.. ++...||+.++-.|+||+|....+++|+.|.-+++...+++...+++..+-+.++
T Consensus 185 vVladGelv~~t~----dne~sdLfyaiPWSqGTlgfLVaatiriIkvK~Yvkltyip~~~l~e~c~k~~e~ 252 (543)
T KOG1262|consen 185 VVLADGELVRVTP----DNEHSDLFYAIPWSQGTLGFLVAATIRIIKVKKYVKLTYIPVHGLDEYCKKITEL 252 (543)
T ss_pred EEecCCeEEEecC----CcccCceEEEcccccCchheeeeeEEEEEeccceEEEEEEecccHHHHHHHHHhh
Confidence 9999999999864 4466799999999999999999999999999999999999999988877666554
No 32
>PRK13904 murB UDP-N-acetylenolpyruvoylglucosamine reductase; Provisional
Probab=99.45 E-value=4.5e-13 Score=129.51 Aligned_cols=155 Identities=14% Similarity=0.119 Sum_probs=119.4
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCC
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKG 179 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~ 179 (423)
.+++.|+ +.+++|++++++.|.+.+ + ++|+.+.|+|||+.-.+.. .++++ -+.+++.+ +++.
T Consensus 5 ~~L~~~t---t~~iGG~A~~~~~~~~~~-l----------~~p~~vlG~GSNlLv~D~g-~~~vv-~~~~~~~~-~~~~- 66 (257)
T PRK13904 5 IDFSKYS---SVKIGPPLEVLVLEEIDD-F----------SQDGQIIGGANNLLISPNP-KNLAI-LGKNFDYI-KIDG- 66 (257)
T ss_pred cchhhcC---ceeECceEEEEEEechhh-h----------CCCeEEEeceeEEEEecCC-ccEEE-EccCcCeE-EEeC-
Confidence 5677787 678999999999998887 5 8999999999998655443 33444 34568887 6654
Q ss_pred CCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeCCCcEEEccC
Q 014546 180 SGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLANGDVIDMLG 257 (423)
Q Consensus 180 ~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~dG~iv~~~~ 257 (423)
.+++|+||+.|.+|.+++.++|+. +....++|++ |||++.||+|. ||. +.|.|.++++++ |+ ...
T Consensus 67 -~~v~~~AG~~l~~l~~~~~~~gl~GlE~l~gIPGt--VGGAv~mNaGa-----~g~ei~d~l~~V~~~~--~~---~~~ 133 (257)
T PRK13904 67 -ECLEIGGATKSGKIFNYAKKNNLGGFEFLGKLPGT--LGGLVKMNAGL-----KEYEISNNLESICTNG--GW---IEK 133 (257)
T ss_pred -CEEEEEcCCcHHHHHHHHHHCCCchhhhhcCCCcc--HHHHHHhcCCc-----CccchheeEEEEEEEe--eE---EeH
Confidence 479999999999999999999998 8877788876 99999999998 886 999999999997 42 222
Q ss_pred CcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCc
Q 014546 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLS 294 (423)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~ 294 (423)
. ....+|.-..+ . .||++++|++.|.++
T Consensus 134 ~--e~~f~YR~S~~----~---~iIl~a~f~l~~~~~ 161 (257)
T PRK13904 134 E--DIGFGYRSSGI----N---GVILEARFKKTHGFD 161 (257)
T ss_pred H--HCcccccCcCC----C---cEEEEEEEEECCCCH
Confidence 1 12233332111 1 399999999998643
No 33
>PF02913 FAD-oxidase_C: FAD linked oxidases, C-terminal domain; InterPro: IPR004113 Some oxygen-dependent oxidoreductases are flavoproteins that contain a covalently bound FAD group which is attached to a histidine via an 8-alpha-(N3-histidyl)-riboflavin linkage. The region around the histidine that binds the FAD group is conserved in these enzymes (see IPR006093 from INTERPRO).; GO: 0003824 catalytic activity, 0050660 flavin adenine dinucleotide binding; PDB: 1WVE_B 1DII_B 1WVF_A 1DIQ_A 2UUU_B 2UUV_A 1W1M_A 1E8H_B 1E0Y_B 1DZN_B ....
Probab=98.81 E-value=3.4e-09 Score=100.48 Aligned_cols=116 Identities=27% Similarity=0.315 Sum_probs=90.6
Q ss_pred CCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHH
Q 014546 292 KLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDR 371 (423)
Q Consensus 292 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~ 371 (423)
+|+...+.++.|++++++.+++..+++. +..|+++|+||+..++++.++.. . +.+.. ..+++++|+.|++++.+.
T Consensus 1 lPe~~~~~~~~f~~~~~a~~~~~~i~~~-g~~p~a~el~d~~~~~~~~~~~~-~--~~~~~-~~~~llv~~~g~~~~~~~ 75 (248)
T PF02913_consen 1 LPEARATALVFFPSFEDAADAVRAIMQS-GIIPSAIELLDSAALKLALEHWG-E--PLPPE-GGAVLLVEFEGSDEEAVE 75 (248)
T ss_dssp --SEEEEEEEEESCHHHHHHHHCCCCHH-CSSCCECCCCHHHHHHHHHHSEE-E--TSSTT-TSEEEEEECCCHHHCCHH
T ss_pred CCcceEEEEEEcCCHHHHHHHHHHHHHc-CCCceEEeeeCHHHHHHHHhhcC-C--CccCC-cccEEEEEECCCcHHHHH
Confidence 4888889999999999999999998766 88999999999999999988652 2 22222 568999999998866556
Q ss_pred HHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhhHH
Q 014546 372 EKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELITGY 412 (423)
Q Consensus 372 ~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~~a 412 (423)
+.++..+..+.+.....+.+++.++++.+++|+.|+.+.+.
T Consensus 76 ~~~~~~i~~~~~~~~~~~~~~a~~~~~~~~~W~~R~~~~~~ 116 (248)
T PF02913_consen 76 EQLEAEIEEICKKYGGEDVVIADDEEEQERLWAIRRAIMPY 116 (248)
T ss_dssp HHHHHHHHHHHCTCTCCEEEEEHCHHCTSTHHHHHHHHCCG
T ss_pred HHHHHHHHHHHhhcCCceeEEeCCHHHHHhhhhhhhhhccc
Confidence 65552344444555466788999999999999999999883
No 34
>PRK09799 putative oxidoreductase; Provisional
Probab=97.57 E-value=0.00012 Score=71.41 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=90.8
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHH
Q 014546 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFL 198 (423)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l 198 (423)
-+..|+|.+|..++++- ++-...+.+|||.+.-........++||++++ .+-.+..+++.++++|++++.++.+..
T Consensus 4 ~y~~P~sl~Ea~~ll~~---~~~~a~ilAGGT~L~~~~~~~~~~~lIdi~~i-eL~~I~~~~~~l~IGA~vT~~~l~~~~ 79 (258)
T PRK09799 4 QFFRPDSVEQALELKRR---YQDEAVWFAGGSKLNATPTRTDKKIAISLQDL-ELDWIEWDNGALRIGAMSRLQPLRDAR 79 (258)
T ss_pred cEeCCCCHHHHHHHHHh---CCCCCEEEecCCChHhhhCCCCCCEEEEcCCC-CCCeEEecCCEEEEccCCcHHHHHhCc
Confidence 47889999999998763 43235678999998432111234689999986 555666677889999999999998753
Q ss_pred Hh------CCCCcccCCCCCCcceeccccccCCCCCCcccccccc--ceEeEEEEEeCCCcEEEccCCcccCCCCCCccc
Q 014546 199 DD------HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH--GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKH 270 (423)
Q Consensus 199 ~~------~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~--d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~ 270 (423)
.- .=..+. +|...+.+|+||++++..- .+.+. =..++.+|++.+|+.+ .+..
T Consensus 80 ~~~~~L~~a~~~va-s~qIRN~aTiGGNl~~a~p------~sD~~p~LlAldA~v~l~~~r~v-------------pl~~ 139 (258)
T PRK09799 80 FIPAALREALGFVY-SRHLRNQSTIGGEIAARQE------ESVLLPVLLALDAELVFGNGETL-------------SIED 139 (258)
T ss_pred ccHHHHHHHHHHhC-CHHHhccchhHHHhhcCCc------cHHHHHHHHHcCCEEEEecCcEE-------------eHHH
Confidence 21 111122 4566778899999986532 12111 1233445555555333 2344
Q ss_pred ccccCCCCeeEEEEEEEE
Q 014546 271 LFIGSEGSLGIVTKVSIH 288 (423)
Q Consensus 271 l~~Gs~GtlGIIt~~tl~ 288 (423)
++.|..+ .+||++.+-
T Consensus 140 f~~g~~~--Eil~~I~iP 155 (258)
T PRK09799 140 YLACPCD--RLLTEIIIP 155 (258)
T ss_pred hcCCCCC--cEEEEEEcC
Confidence 5555444 579988774
No 35
>PF00941 FAD_binding_5: FAD binding domain in molybdopterin dehydrogenase; InterPro: IPR002346 Oxidoreductases, that also bind molybdopterin, have essentially no similarity outside this common domain. They include aldehyde oxidase (1.2.3.1 from EC), that converts an aldehyde and water to an acid and hydrogen peroxide, and xanthine dehydrogenase (1.1.1.204 from EC), that converts xanthine to urate. These enzymes require molybdopterin and FAD as cofactors and have and two 2FE-2S clusters. Another enzyme that contains this domain is the Pseudomonas thermocarboxydovorans carbon monoxide oxygenase.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2E1Q_C 2CKJ_A 3EUB_K 3NS1_K 3NVV_B 1FO4_B 3AM9_A 3AX7_B 3BDJ_A 3ETR_B ....
Probab=97.41 E-value=6.6e-05 Score=68.71 Aligned_cols=103 Identities=17% Similarity=0.217 Sum_probs=66.3
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc--ccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHH
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~--~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~ 195 (423)
.-++.|+|.+|+.++++ .++ ...+.+|||.+...-. ......+||++++..+..++.+++.++++|++++.++.
T Consensus 3 ~~~~~P~sl~ea~~ll~---~~~-~a~~vaGgT~l~~~~~~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vtl~~l~ 78 (171)
T PF00941_consen 3 FEYFRPKSLEEALELLA---KGP-DARIVAGGTDLGVQMREGILSPDVLIDLSRIPELNGISEDDGGLRIGAAVTLSELE 78 (171)
T ss_dssp -EEEE-SSHHHHHHHHH---HGT-TEEEESS-TTHHHHHHTTS---SEEEEGTTSGGGG-EEEETSEEEEETTSBHHHHH
T ss_pred eEEEccCCHHHHHHHHh---cCC-CCEEEeCCCccchhcccCccccceEEEeEEecccccEEEeccEEEECCCccHHHHh
Confidence 45889999999999998 222 4577888998632111 11246899999865554555557889999999999999
Q ss_pred HH---------HHhCCCCcccCCCCCCcceeccccccCC
Q 014546 196 SF---------LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (423)
Q Consensus 196 ~~---------l~~~Gl~~~~~pgs~~~~tIGG~va~na 225 (423)
+. |.++-..+. .|.....+|+||++++..
T Consensus 79 ~~~~~~~~~p~L~~~~~~ia-s~~IRn~aTiGGNl~~~~ 116 (171)
T PF00941_consen 79 ESPLIQQYFPALAQAARRIA-SPQIRNRATIGGNLCNAS 116 (171)
T ss_dssp HHHHHHHHHHHHHHHHCTSS--HHHHTT-BHHHHHHHTB
T ss_pred hcchhhhhHHHHHHHHHHhC-CHhHeeeeeeccccccCc
Confidence 86 222222232 455567789999997543
No 36
>TIGR03312 Se_sel_red_FAD probable selenate reductase, FAD-binding subunit. This protein is suggested by Bebien, et al., to be the FAD-binding subunit of a molydbopterin-containing selenate reductase. Our comparative genomics suggests it to be a subunit of a selenium-dependent molybdenum hydroxylase for an unknown substrate.
Probab=97.37 E-value=0.00031 Score=68.49 Aligned_cols=101 Identities=18% Similarity=0.238 Sum_probs=69.3
Q ss_pred EEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHH--
Q 014546 120 LLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (423)
Q Consensus 120 Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~-- 197 (423)
++.|+|.+|..++++ +++-.-.+.+|||.+.-........++||++++ .+..|..+++.++++|++|+.++.+.
T Consensus 4 y~~P~sl~Ea~~ll~---~~~~~a~~lAGGTdL~~~~~~~~~~~lIdl~~i-eL~~I~~~~~~l~IGA~~t~~~l~~~~~ 79 (257)
T TIGR03312 4 FFRPESTIQALELKK---RHTGVAVWFAGGSKLNATPTRTDKKVAISLDKL-ALDKIELQGGALHIGAMCHLQSLIDNEL 79 (257)
T ss_pred eECCCCHHHHHHHHH---hCCCCCEEEecCcchhhhhcccCCCEEEEcCCC-CCCcEEecCCEEEEEeCCcHHHHHhCcc
Confidence 678999999998876 333224567999998532211123688999886 55556666778999999999998753
Q ss_pred ----HHhCCCCcccCCCCCCcceeccccccCC
Q 014546 198 ----LDDHGFIMPLDLGAKGSCQIGGNVSTNA 225 (423)
Q Consensus 198 ----l~~~Gl~~~~~pgs~~~~tIGG~va~na 225 (423)
|.+.=..+. +|...+.+|+||++++..
T Consensus 80 ~~~~L~~aa~~va-~~qIRN~gTlGGNl~~a~ 110 (257)
T TIGR03312 80 TPAALKEALGFVY-SRHIRNQATIGGEIAAFQ 110 (257)
T ss_pred hHHHHHHHHHHhC-CHHHhccccHHHHhhcCC
Confidence 211111122 566778899999998653
No 37
>PRK09971 xanthine dehydrogenase subunit XdhB; Provisional
Probab=97.31 E-value=0.0012 Score=65.48 Aligned_cols=101 Identities=12% Similarity=0.157 Sum_probs=68.3
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc-c-ccCCeEEEEcCCCCCeEEEe-CCCCEEEEEccccHHHHH
Q 014546 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFD-KGSGVLVCEAGCILENLV 195 (423)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~-~-~~~~gvvIdls~mn~I~~id-~~~~~v~VeaGv~~~~L~ 195 (423)
-++.|+|.+|..++++. ++ ...+.+|||.+.-.. . ......+||++++..+..|. .+++.++++|++++.++.
T Consensus 6 ~~~~P~sl~Ea~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdl~~i~eL~~I~~~~~~~l~IGA~vt~~~l~ 81 (291)
T PRK09971 6 EYHEAATLEEAIELLAD---NP-QAKLIAGGTDVLIQLHHHNDRYRHLVSIHNIAELRGITLAEDGSIRIGAATTFTQII 81 (291)
T ss_pred ceeCCCCHHHHHHHHHh---CC-CCEEEeccchHHHHHhCCCCCCCeEEEcCCChhhhCeEecCCCEEEEEeCCcHHHHh
Confidence 58889999999998873 32 346789999973211 1 11347899999866554555 344679999999999998
Q ss_pred H--HHHhCC-------CCcccCCCCCCcceeccccccC
Q 014546 196 S--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 196 ~--~l~~~G-------l~~~~~pgs~~~~tIGG~va~n 224 (423)
+ .+.++- ..+. +|...+.+|+||+|++.
T Consensus 82 ~~~~i~~~~p~L~~a~~~ia-~~qIRN~aTiGGNi~~a 118 (291)
T PRK09971 82 EDPIIQKHLPALAEAAVSIG-GPQIRNVATIGGNICNG 118 (291)
T ss_pred cChHHHHHhHHHHHHHHHhC-CHHHhcceecccccccC
Confidence 6 222110 1122 45667889999999864
No 38
>TIGR02963 xanthine_xdhA xanthine dehydrogenase, small subunit. Members of this protein family are the small subunit (or, in eukaryotes, the N-terminal domain) of xanthine dehydrogenase, an enzyme of purine catabolism via urate. The small subunit contains both an FAD and a 2Fe-2S cofactor. Aldehyde oxidase (retinal oxidase) appears to have arisen as a neofunctionalization among xanthine dehydrogenases in eukaryotes and
Probab=97.01 E-value=0.0013 Score=69.38 Aligned_cols=104 Identities=13% Similarity=0.161 Sum_probs=73.8
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHH
Q 014546 116 SSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILEN 193 (423)
Q Consensus 116 ~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~ 193 (423)
...-++.|+|.+|+.++++. +. ...+.+|||.+.-.. --.....+||++++..+..+..+++.++++|++++.+
T Consensus 191 ~~~~~~~P~sl~Ea~~ll~~---~~-~a~lvAGGTdl~~~~~~~~~~~~~lIdl~~I~EL~~I~~~~~~l~IGA~vT~~e 266 (467)
T TIGR02963 191 GGERFIAPTTLDDLAALKAA---HP-DARIVAGSTDVGLWVTKQMRDLPDVIYVGQVAELKRIEETDDGIEIGAAVTLTD 266 (467)
T ss_pred CCceEECCCCHHHHHHHHhh---CC-CCEEEecCcchHHHHhcCCCCCCeEEECCCChhhccEEEcCCEEEEecCCcHHH
Confidence 34568999999999999873 32 356789999973221 1113368999998766555666677899999999999
Q ss_pred HHHHHHhC--CC-----CcccCCCCCCcceeccccccC
Q 014546 194 LVSFLDDH--GF-----IMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 194 L~~~l~~~--Gl-----~~~~~pgs~~~~tIGG~va~n 224 (423)
+.+.+.++ .+ .+. .|.....+||||+|++.
T Consensus 267 l~~~l~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~a 303 (467)
T TIGR02963 267 AYAALAKRYPELGELLRRFA-SLQIRNAGTLGGNIANG 303 (467)
T ss_pred HHHHHHHHhHHHHHHHHHhC-CHHHcCceecccccccC
Confidence 98766543 11 122 45667889999999864
No 39
>TIGR03195 4hydrxCoA_B 4-hydroxybenzoyl-CoA reductase, beta subunit. This model represents the second largest chain, beta, of the enzyme 4-hydroxybenzoyl-CoA reductase. In species capable of degrading various aromatic compounds by way of benzoyl-CoA, this enzyme can convert 4-hydroxybenzoyl-CoA to benzoyl-CoA.
Probab=96.67 E-value=0.0018 Score=65.08 Aligned_cols=101 Identities=18% Similarity=0.225 Sum_probs=68.1
Q ss_pred EEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc--ccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHH
Q 014546 119 LLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (423)
Q Consensus 119 ~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~--~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~ 196 (423)
-++.|+|.+|..++++- ++ .-.+.+|||.+.-... ......+||+.++..+..|+.+++.++++++||+.++.+
T Consensus 6 ~~~~P~sl~eA~~ll~~---~~-~a~ivaGGTdl~~~~~~~~~~p~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~~l~~ 81 (321)
T TIGR03195 6 RTLRPASLADAVAALAA---HP-AARPLAGGTDLLPNLRRGLGQPETLVDLTGIDEIAQLSTLADGLRIGAGVTLAALAE 81 (321)
T ss_pred eEECCCCHHHHHHHHhh---CC-CCEEEEccchHHHHHhcccCCCCeEEECCCChhhccEEecCCEEEEeccCcHHHHhh
Confidence 48899999999998863 32 2357899998632211 113368999998655444555567899999999999965
Q ss_pred HH--Hh-------CCCCcccCCCCCCcceeccccccC
Q 014546 197 FL--DD-------HGFIMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 197 ~l--~~-------~Gl~~~~~pgs~~~~tIGG~va~n 224 (423)
.- .+ .=..+. +|.....+|+||++++.
T Consensus 82 ~~~i~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~~ 117 (321)
T TIGR03195 82 DALVRTRWPALAQAARAVA-GPTHRAAATLGGNLCLD 117 (321)
T ss_pred ChhhHhHhHHHHHHHHHhC-CHHHhCceecHHhhhcc
Confidence 31 11 111122 45667789999999964
No 40
>TIGR03199 pucC xanthine dehydrogenase C subunit. This gene has been characterized in B. subtilis as the FAD binding-subunit of xanthine dehydrogenase (pucC), acting in conjunction with pucD, the molybdopterin-binding subunit and pucE, the FeS-binding subunit.
Probab=96.61 E-value=0.0014 Score=64.03 Aligned_cols=97 Identities=13% Similarity=0.168 Sum_probs=67.0
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccc---cCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHH--
Q 014546 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP---VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF-- 197 (423)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~---~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~-- 197 (423)
|+|.+|+.++++. ++ ...+.+|||.+.-.... .....+||++++..+..|+.+++.+++++++++.++.+.
T Consensus 1 P~sl~ea~~ll~~---~~-~a~ivaGgT~l~~~~~~~~~~~~~~lIdi~~i~eL~~I~~~~~~l~IGA~vt~~~l~~~~~ 76 (264)
T TIGR03199 1 PAALDEAWSLLEK---AP-DSTFVSGSTLLQLQWEKGTLPMKQHLVSLEGIDELKGISTSDTHVSIGALTTLNECRKNPL 76 (264)
T ss_pred CCCHHHHHHHHHh---CC-CCEEEEccChHHHHHhcCcCCCCCeEEEcCCChhhCcEEecCCEEEEecCCcHHHHhhChH
Confidence 7899999998874 22 34678999987432111 124789999997776667777789999999999999742
Q ss_pred HHhC-------CCCcccCCCCCCcceeccccccC
Q 014546 198 LDDH-------GFIMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 198 l~~~-------Gl~~~~~pgs~~~~tIGG~va~n 224 (423)
+.++ =..+. +|...+.+|+||++++.
T Consensus 77 i~~~~p~L~~a~~~ia-~~qIRN~aTlGGNl~~~ 109 (264)
T TIGR03199 77 IKRALPCFVDAASAIA-APGVRNRATIGGNIASG 109 (264)
T ss_pred hHhHhHHHHHHHHHhc-CHHHhcceecHHhccCc
Confidence 1110 00122 45667889999999864
No 41
>TIGR02969 mam_aldehyde_ox aldehyde oxidase. Members of this family are mammalian aldehyde oxidase (EC 1.2.3.1) isozymes, closely related to xanthine dehydrogenase/oxidase.
Probab=95.46 E-value=0.026 Score=66.81 Aligned_cols=103 Identities=18% Similarity=0.222 Sum_probs=72.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc-c-ccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHH
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS-V-PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLV 195 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~-~-~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~ 195 (423)
.-++.|.|.+|+.++++. +. .-.+.+|||.+.-.. . ......+||++++..+..+..+++.++++|++++.++.
T Consensus 237 ~~~~~P~tl~ea~~ll~~---~~-~a~lvAGGTdl~~~~k~~~~~~~~lIdi~~I~EL~~i~~~~~~l~IGA~vT~~el~ 312 (1330)
T TIGR02969 237 MMWISPVTLKELLEAKFK---YP-QAPVVMGNTSVGPEVKFKGVFHPVIISPDRIEELSVVNHTGDGLTLGAGLSLAQVK 312 (1330)
T ss_pred ceEECCCCHHHHHHHHHh---CC-CCEEEecCcchHHHhhhccCCCCeEEECCCChhhhcEEEcCCEEEEeccccHHHHH
Confidence 468999999999998774 22 245678999983221 0 11235799999876666666667889999999999999
Q ss_pred HHHHhC---------C----C-----CcccCCCCCCcceeccccccCC
Q 014546 196 SFLDDH---------G----F-----IMPLDLGAKGSCQIGGNVSTNA 225 (423)
Q Consensus 196 ~~l~~~---------G----l-----~~~~~pgs~~~~tIGG~va~na 225 (423)
+.|.+. . + .+. .|...+.+||||+|++..
T Consensus 313 ~~l~~~i~~~p~~~~~~~p~L~~a~~~ia-s~qIRN~gTlGGNi~~as 359 (1330)
T TIGR02969 313 DILADVVQKLPEETTQTYRALLKHLGTLA-GSQIRNMASLGGHIISRH 359 (1330)
T ss_pred HHHHHhhhcCchhhhHHHHHHHHHHHHhC-ChhhcccccchhhcccCC
Confidence 876533 1 0 112 455677899999998643
No 42
>PLN00192 aldehyde oxidase
Probab=95.40 E-value=0.037 Score=65.60 Aligned_cols=108 Identities=15% Similarity=0.133 Sum_probs=73.4
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVS 196 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~ 196 (423)
..-++.|.|.+|+.++++.....+-...+..|||.+.-.-......++||++++..+..+..+++.++++|++++.++.+
T Consensus 233 ~~~~~~P~sl~ea~~ll~~~~~~~~~a~lvAGgTdl~~~k~~~~p~~lIdi~~I~EL~~I~~~~~~l~IGA~vTl~el~~ 312 (1344)
T PLN00192 233 RYRWYTPVSVEELQSLLESNNFDGVSVKLVVGNTGTGYYKDEELYDKYIDIRHIPELSMIRRDEKGIEIGAVVTISKAIE 312 (1344)
T ss_pred CceEECcCCHHHHHHHHHhCCCCCCCeEEEEeCCcceeeeccCCCCeEEEcCCChhhhcEEecCCEEEEeecCcHHHHHH
Confidence 34689999999999987632100112556788998732111112378999998666656666678899999999999998
Q ss_pred HHHhCCC---Ccc---------cCCCCCCcceeccccccC
Q 014546 197 FLDDHGF---IMP---------LDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 197 ~l~~~Gl---~~~---------~~pgs~~~~tIGG~va~n 224 (423)
.+..+-. .+| -.|...+.+||||+|++.
T Consensus 313 ~l~~~~~~~~~~p~L~~~~~~vAs~qIRN~aTlGGNI~~A 352 (1344)
T PLN00192 313 ALREESKSEYVFKKIADHMEKIASRFVRNTGSIGGNLVMA 352 (1344)
T ss_pred HHHhhccccchHHHHHHHHHHhcChhhccceechhhhccc
Confidence 7765421 111 135566789999999864
No 43
>PLN02906 xanthine dehydrogenase
Probab=95.39 E-value=0.019 Score=68.01 Aligned_cols=104 Identities=14% Similarity=0.070 Sum_probs=72.7
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L 194 (423)
..-++.|+|.+|+.++++. +. .-.+.+|||.+.-.. .-....++||++++..+..|..++..++++|++++.++
T Consensus 228 ~~~~~~P~tl~ea~~ll~~---~~-~a~ivAGGTdl~~~~~~~~~~~~~lIdi~~I~eL~~I~~~~~~l~IGA~vT~~el 303 (1319)
T PLN02906 228 GLTWYRPTSLQHLLELKAE---YP-DAKLVVGNTEVGIEMRFKNAQYPVLISPTHVPELNAIKVKDDGLEIGAAVRLSEL 303 (1319)
T ss_pred CceEECcCCHHHHHHHHHh---CC-CCEEEEcCchhHHHhhhccCCCCeEEECCCChhhhcEEecCCEEEEecCCcHHHH
Confidence 3458899999999998764 22 245678999983211 11134689999986666556666778999999999999
Q ss_pred HHHHHhCCC--------Ccc---------cCCCCCCcceeccccccC
Q 014546 195 VSFLDDHGF--------IMP---------LDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 195 ~~~l~~~Gl--------~~~---------~~pgs~~~~tIGG~va~n 224 (423)
.+.|.+.=. .+| -.|...+.+||||+|++.
T Consensus 304 ~~~l~~~i~~~~~~~~~~~p~L~~~~~~ias~qIRN~aTiGGNI~~a 350 (1319)
T PLN02906 304 QNLFRKVVKERPAHETSACKAFIEQLKWFAGTQIRNVASIGGNICTA 350 (1319)
T ss_pred HHHHHHHhhhcchhhhHHHHHHHHHHHHhCCHhhcCceechhhhccC
Confidence 987554310 011 245667889999999864
No 44
>COG1319 CoxM Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]
Probab=94.28 E-value=0.1 Score=51.61 Aligned_cols=105 Identities=13% Similarity=0.157 Sum_probs=69.9
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc--ccCCeEEEEcCCCCCeE-EEeCCCCEEEEEccccHHH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV--PVFDEVIINMGSMNNII-TFDKGSGVLVCEAGCILEN 193 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~--~~~~gvvIdls~mn~I~-~id~~~~~v~VeaGv~~~~ 193 (423)
+--+.+|.|.+|...+++ +++ -..+.+|||++.-..- -....-+||++++.... ....+++.++++|-+++.+
T Consensus 3 ~f~y~rp~Sv~eA~~ll~---~~~-~a~~laGGt~L~~~~k~~~~~p~~lVdI~~l~~~~~~~~~~g~~l~IGA~vt~~e 78 (284)
T COG1319 3 NFEYYRPASVEEALNLLA---RAP-DAKYLAGGTDLLPLMKLGIERPDHLVDINGLDELLGIVTTEGGSLRIGALVTLTE 78 (284)
T ss_pred ceEEECCCCHHHHHHHHH---hCC-CcEEeeCcchHHHHhhcccCCcceEEEecCChhhhceEeecCCEEEEeecccHHH
Confidence 345889999998888877 444 5677899999853111 01345688998874222 2334567799999999999
Q ss_pred HHHHHHhCCC--------CcccCCCCCCcceeccccccCC
Q 014546 194 LVSFLDDHGF--------IMPLDLGAKGSCQIGGNVSTNA 225 (423)
Q Consensus 194 L~~~l~~~Gl--------~~~~~pgs~~~~tIGG~va~na 225 (423)
+.+.-.-+.. ..--+|...+.+||||+++.+.
T Consensus 79 i~~~~~~~~~~p~L~ea~~~ia~~qvRN~aTiGGn~c~a~ 118 (284)
T COG1319 79 IARHPAVRRIPPALSEAASAIASPQVRNRATIGGNLCNAD 118 (284)
T ss_pred HHhChhhhhhchHHHHHHHHhcChhhcceeeecchhccCC
Confidence 9743322221 1123677788899999977554
No 45
>COG4630 XdhA Xanthine dehydrogenase, iron-sulfur cluster and FAD-binding subunit A [Nucleotide transport and metabolism]
Probab=92.90 E-value=0.26 Score=50.15 Aligned_cols=129 Identities=18% Similarity=0.204 Sum_probs=79.3
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc---CCeEEEEcCCCCCeEEEeCCCCEEEEEcc
Q 014546 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAG 188 (423)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~---~~gvvIdls~mn~I~~id~~~~~v~VeaG 188 (423)
.+++..+.++.|.+.+|...++. ..-+ .++..|+|.+. --+.. +-..+|-..++..+-.|+...+.+++++|
T Consensus 198 ~~~~~~~r~~~P~~l~D~a~l~a--a~P~--AtivAGsTDvg-LwVtk~mr~l~~vi~v~~l~eL~~i~~~~~~l~iGAg 272 (493)
T COG4630 198 EVGSGDDRFIVPATLADFADLLA--AHPG--ATIVAGSTDVG-LWVTKQMRDLNPVIFVGHLAELRRIEVSTGGLEIGAG 272 (493)
T ss_pred EecCCCceeEeeccHHHHHHHHh--hCCC--CEEEecCcchh-hHHHHHHhhcCCeEEecchhhhheeeecCCcEEEccC
Confidence 34555678999999999999875 2334 34456666652 11110 11345555666666667777889999999
Q ss_pred ccHHHHHHHHHhCCCCcc---cCCC---CCCcceeccccccCCCCCCcccccccc--ceEeEEEEEeCCCc
Q 014546 189 CILENLVSFLDDHGFIMP---LDLG---AKGSCQIGGNVSTNAGGLRLVRYGSLH--GNVLGLEAVLANGD 251 (423)
Q Consensus 189 v~~~~L~~~l~~~Gl~~~---~~pg---s~~~~tIGG~va~nagG~~~~~yG~~~--d~V~~levVl~dG~ 251 (423)
+++.|..++|..+=-.|. .-.| ..+..|+||+|++++ - -|..- =-.++.++++-.|.
T Consensus 273 vt~t~a~~~la~~~P~l~~L~~r~gg~qvRN~gTlGGNIangS-P-----IGDtPPaLIALgA~ltLr~g~ 337 (493)
T COG4630 273 VTYTQAYRALAGRYPALGELWDRFGGEQVRNMGTLGGNIANGS-P-----IGDTPPALIALGATLTLRSGD 337 (493)
T ss_pred ccHHHHHHHHHhhCchHHHHHHHhcchhhhccccccccccCCC-c-----CCCCCchhhhcCcEEEEEecC
Confidence 999999999987521111 0111 235578999999653 1 22211 13456677775554
No 46
>PF09330 Lact-deh-memb: D-lactate dehydrogenase, membrane binding; InterPro: IPR015409 Members of this entry are predominantly found in prokaryotic D-lactate dehydrogenase, forming the cap-membrane-binding domain, which consists of a large seven-stranded antiparallel beta-sheet flanked on both sides by alpha-helices. They allow for membrane association []. ; GO: 0050660 flavin adenine dinucleotide binding, 0055085 transmembrane transport; PDB: 1F0X_A.
Probab=64.22 E-value=15 Score=36.31 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=32.1
Q ss_pred EEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhc
Q 014546 298 LAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYL 342 (423)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~ 342 (423)
++++..+|.+++.+.=+.+.......|.+.|||.+.+.+++.++.
T Consensus 1 VFYIGTNd~~~L~~lRR~iL~~f~~LPisgEYmHRdafdia~~YG 45 (291)
T PF09330_consen 1 VFYIGTNDPAVLTDLRRHILSNFKNLPISGEYMHRDAFDIAEKYG 45 (291)
T ss_dssp EEEEEES-HHHHHHHHHHHHHH-SS--SEEEEEEHHHHHHH----
T ss_pred CeEeccCCHHHHHHHHHHHHhCCccCChhhhhhhhHHHHHHHHhc
Confidence 467888998888887777777778889999999999999998874
No 47
>KOG0430 consensus Xanthine dehydrogenase [Nucleotide transport and metabolism]
Probab=56.91 E-value=19 Score=41.91 Aligned_cols=106 Identities=15% Similarity=0.070 Sum_probs=67.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHH
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSF 197 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~ 197 (423)
.....|.|.+|+..+.+ .........|+|...---...+-...||.++......++.++..+++++++++.++.+.
T Consensus 215 ~~W~~P~sl~eL~~~~~----~~~~~~Lv~GNT~~gv~~r~~~~~~~Id~~~v~el~~~~~~~~gi~lGa~~sls~~~~~ 290 (1257)
T KOG0430|consen 215 IRWYWPVSLEELFELKA----NKPDAKLVAGNTAHGVYRRSPDYQKFIDVSGVPELKALNVDDNGLELGAALSLSETMEL 290 (1257)
T ss_pred cEEeCcccHHHHHHHHh----cCcceEEEeccccceEEeccCCCcceechhcCchhhhcccCCCceEEcccccHHHHHHH
Confidence 45778999999999987 33345556666664211111122456787775543345545566999999999999888
Q ss_pred HHhCCCCc--------------ccCCCCCCcceeccccccCCCC
Q 014546 198 LDDHGFIM--------------PLDLGAKGSCQIGGNVSTNAGG 227 (423)
Q Consensus 198 l~~~Gl~~--------------~~~pgs~~~~tIGG~va~nagG 227 (423)
+.+.--.. -..+.....+|+||+|.+.+-+
T Consensus 291 l~~~~~~~~~~~~~~~~~hl~~~A~~~IRN~atigGnI~~~~~~ 334 (1257)
T KOG0430|consen 291 LRKLVKRPGFEYFKALWEHLKWFANVQIRNVGTIGGNICTKAQS 334 (1257)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHhcccceeccccccceeEeccCC
Confidence 86543110 0123445678899999776544
No 48
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=38.50 E-value=77 Score=22.86 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=33.7
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (423)
+|..+|. .+|.|..+.+...+.......+++.|.+.+++.+++..+.
T Consensus 14 ~l~~~f~----~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~ 60 (70)
T PF00076_consen 14 ELRDFFS----QFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELN 60 (70)
T ss_dssp HHHHHHH----TTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----HhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcC
Confidence 5555553 3566677776665555566778999999999999988763
No 49
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=38.29 E-value=99 Score=22.69 Aligned_cols=38 Identities=21% Similarity=0.200 Sum_probs=31.2
Q ss_pred eeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 279 lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|.|.++.+...+.......+++.|.+.+++.+++...
T Consensus 22 ~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~ 59 (70)
T PF14259_consen 22 FGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELL 59 (70)
T ss_dssp SSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred cCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHC
Confidence 46688999888766566788999999999998888775
No 50
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=37.89 E-value=44 Score=36.10 Aligned_cols=33 Identities=12% Similarity=0.378 Sum_probs=28.1
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCC-CeEEEe
Q 014546 114 RGSSKLLLQPRTTNEVSQILKYCNSRL-LAVVPQ 146 (423)
Q Consensus 114 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~-ipv~~~ 146 (423)
.|.|-..++|.|.++|.+++++|.++. .|++.+
T Consensus 149 ~G~~yv~fKPGtIeqI~svi~IAka~P~~pIilq 182 (717)
T COG4981 149 DGFPYVAFKPGTIEQIRSVIRIAKANPTFPIILQ 182 (717)
T ss_pred cCceeEEecCCcHHHHHHHHHHHhcCCCCceEEE
Confidence 356788999999999999999999884 577764
No 51
>PF07317 YcgR: Flagellar regulator YcgR; InterPro: IPR009926 This entry represents the N-terminal domain of YcgR proteins. The function of this domain is not known, but it is known to interact with the C-terminal which has cyclic-di-GMP bound []. YcgR is involved in the flagellar motor function and is a member of the flagellar regulon [, ].; PDB: 2GJG_A 3KYF_A.
Probab=35.84 E-value=1.4e+02 Score=24.97 Aligned_cols=68 Identities=19% Similarity=0.287 Sum_probs=44.2
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCC
Q 014546 123 PRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHG 202 (423)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~G 202 (423)
-+++.||..+++-..+++.|+.++-+ .+ .. .+ .+|+++|++++++....|..-.+-...+....
T Consensus 4 ~~~p~eI~~~Lr~L~~~~~~l~v~~~-~g---------~~-f~-----T~iL~VD~~~~~l~lD~~~~~~~n~~~l~a~~ 67 (108)
T PF07317_consen 4 LRNPREILAVLRDLAKQRSPLTVRHP-RG---------QS-FI-----TSILAVDPDRGTLVLDEGSDEEENQRLLNAEE 67 (108)
T ss_dssp E-SHHHHHHHHHHHHHTT--EEEETT--S---------SE-EE-----E-EEEEETTTTEEEEE--BSGGGHHHHHTT--
T ss_pred ccCHHHHHHHHHHHHhCCCeEEEEeC-CC---------CE-EE-----EEEEEEeCCCCEEEEEcCCChHHHHHHhcCCc
Confidence 35789999999999999999999832 22 11 22 36779999999999999887777666665544
Q ss_pred CCcc
Q 014546 203 FIMP 206 (423)
Q Consensus 203 l~~~ 206 (423)
+.+-
T Consensus 68 ~~~~ 71 (108)
T PF07317_consen 68 LTFV 71 (108)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 4443
No 52
>PRK04322 peptidyl-tRNA hydrolase; Provisional
Probab=30.19 E-value=85 Score=26.72 Aligned_cols=39 Identities=18% Similarity=0.278 Sum_probs=31.7
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 014546 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (423)
Q Consensus 105 y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~ 145 (423)
|..+| ...|.+..|+...|++|+..+.+.|.+.+++...
T Consensus 38 ~~~~W--~~~G~~Kvvlkv~~~~el~~l~~~a~~~~l~~~~ 76 (113)
T PRK04322 38 WLEEW--LNEGQKKVVLKVNSEEELLELKEKAERLGLPTAL 76 (113)
T ss_pred HHHHH--HHCCCcEEEEeCCCHHHHHHHHHHHHHcCCCEEE
Confidence 34455 3467899999999999999999999999988543
No 53
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=30.10 E-value=73 Score=28.25 Aligned_cols=29 Identities=21% Similarity=0.137 Sum_probs=26.0
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEe
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
..|+.|.+.+|+..++++|-+.+-|+.+|
T Consensus 125 ~~v~~Ps~~~~~~~ll~~a~~~~~P~~ir 153 (156)
T cd07033 125 MTVLRPADANETAAALEAALEYDGPVYIR 153 (156)
T ss_pred CEEEecCCHHHHHHHHHHHHhCCCCEEEE
Confidence 56899999999999999999888788876
No 54
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=25.50 E-value=1.1e+02 Score=27.78 Aligned_cols=32 Identities=13% Similarity=0.046 Sum_probs=26.5
Q ss_pred cEEEEcCCHHHHHHHHHHHHh--CCCeEEEeCCC
Q 014546 118 KLLLQPRTTNEVSQILKYCNS--RLLAVVPQGGN 149 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~--~~ipv~~~GgG 149 (423)
..|+.|.+.+|+..+++++-+ .+-|+.++-..
T Consensus 139 ~~v~~Psd~~e~~~~l~~a~~~~~~~P~~ir~~r 172 (178)
T PF02779_consen 139 MKVVVPSDPAEAKGLLRAAIRRESDGPVYIREPR 172 (178)
T ss_dssp EEEEE-SSHHHHHHHHHHHHHSSSSSEEEEEEES
T ss_pred cccccCCCHHHHHHHHHHHHHhCCCCeEEEEeeH
Confidence 568999999999999999999 67899887543
No 55
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=25.30 E-value=68 Score=31.87 Aligned_cols=24 Identities=25% Similarity=0.490 Sum_probs=21.6
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEe
Q 014546 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
.-|.+|+.+++++|+++|+.|+|-
T Consensus 68 ~yT~~di~elv~yA~~rgI~viPE 91 (303)
T cd02742 68 FYTYAQLKDIIEYAAARGIEVIPE 91 (303)
T ss_pred eECHHHHHHHHHHHHHcCCEEEEe
Confidence 347899999999999999999985
No 56
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=24.74 E-value=70 Score=32.33 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=21.4
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEe
Q 014546 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
-|.+|+.+++++|++++|.|+|-
T Consensus 72 YT~~di~elv~yA~~rgI~vIPE 94 (329)
T cd06568 72 YTQEDYKDIVAYAAERHITVVPE 94 (329)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEe
Confidence 38999999999999999999985
No 57
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=24.05 E-value=63 Score=32.30 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=20.6
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEe
Q 014546 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
.-|.+|+++++++|+++||.|+|-
T Consensus 69 ~yT~~di~~lv~yA~~~gI~VIPe 92 (351)
T PF00728_consen 69 YYTKEDIRELVAYAKERGIEVIPE 92 (351)
T ss_dssp EBEHHHHHHHHHHHHHTT-EEEEE
T ss_pred cCCHHHHHHHHHHHHHcCCceeee
Confidence 347899999999999999999985
No 58
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=23.90 E-value=74 Score=31.64 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=22.3
Q ss_pred cCCHHHHHHHHHHHHhCCCeEEEe
Q 014546 123 PRTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 123 P~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
+-|.+|+.+++++|+++++-|+|-
T Consensus 56 ~yT~~ei~ei~~yA~~~gI~vIPe 79 (301)
T cd06565 56 AYTKEEIREIDDYAAELGIEVIPL 79 (301)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEec
Confidence 569999999999999999999985
No 59
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=22.68 E-value=1.8e+02 Score=20.45 Aligned_cols=35 Identities=23% Similarity=0.325 Sum_probs=25.3
Q ss_pred CeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 278 SLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 278 tlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|-|.++.+.-.. ...+++.|.+.++|..++..+
T Consensus 7 ~fG~V~~i~~~~~~----~~~a~V~f~~~~~A~~a~~~l 41 (56)
T PF13893_consen 7 KFGEVKKIKIFKKK----RGFAFVEFASVEDAQKAIEQL 41 (56)
T ss_dssp TTS-EEEEEEETTS----TTEEEEEESSHHHHHHHHHHH
T ss_pred CcccEEEEEEEeCC----CCEEEEEECCHHHHHHHHHHh
Confidence 46778887763333 356788999999999988876
No 60
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.51 E-value=81 Score=32.14 Aligned_cols=22 Identities=32% Similarity=0.677 Sum_probs=20.9
Q ss_pred CHHHHHHHHHHHHhCCCeEEEe
Q 014546 125 TTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
|.+|+.+|+++|++++|.|+|-
T Consensus 84 T~~di~eiv~yA~~rgI~VIPE 105 (357)
T cd06563 84 TQEEIREIVAYAAERGITVIPE 105 (357)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 7899999999999999999985
No 61
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=22.21 E-value=64 Score=30.37 Aligned_cols=73 Identities=14% Similarity=0.287 Sum_probs=43.1
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhccc--------c----cccCCCcc---EEEEcC-----CHHHHHHHHHHHHhC
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDW--------M----RKYRGSSK---LLLQPR-----TTNEVSQILKYCNSR 139 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~--------~----~~~~~~p~---~Vv~P~-----s~eeV~~iv~~a~~~ 139 (423)
.+.+..++..+++-.|++.++....+.... + ......|. .+|.|. ++++|..++..++..
T Consensus 35 ~dvi~Al~~~~~~i~Vvtpde~~~~~a~~~~vl~d~dLN~Ai~aa~~~~~~p~~v~vvmaDLPLl~~~~i~~~~~~~~d~ 114 (210)
T COG1920 35 VDVLGALAGVLGEITVVTPDEEVLVPATKLEVLADPDLNTAINAALDEIPLPSEVIVVMADLPLLSPEHIERALSAAKDA 114 (210)
T ss_pred HHHHHHhhhhcCCceEEcCChHhhhhcccceeeeccchHHHHHHHHhhCCCCcceEEEecccccCCHHHHHHHHHhcCCC
Confidence 355666666666666666555443332210 0 01111122 455543 679999999999988
Q ss_pred CCeEEE-eCCCccC
Q 014546 140 LLAVVP-QGGNTGL 152 (423)
Q Consensus 140 ~ipv~~-~GgGt~l 152 (423)
.+-+.| +|||||.
T Consensus 115 dvviaP~~gGGTn~ 128 (210)
T COG1920 115 DVVIAPGRGGGTNV 128 (210)
T ss_pred cEEEecCCCCceEE
Confidence 888877 4788774
No 62
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=22.17 E-value=85 Score=31.50 Aligned_cols=23 Identities=26% Similarity=0.582 Sum_probs=21.6
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEe
Q 014546 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
-|.+|+.+++++|++++|.|+|-
T Consensus 65 yT~~di~elv~yA~~rgI~vIPE 87 (311)
T cd06570 65 YTQEQIREVVAYARDRGIRVVPE 87 (311)
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 58999999999999999999985
No 63
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=22.04 E-value=1.3e+02 Score=29.95 Aligned_cols=34 Identities=18% Similarity=0.421 Sum_probs=24.3
Q ss_pred ccEEEEcCC------HHHHHHHHHHHHhCC------CeEEEeCCCc
Q 014546 117 SKLLLQPRT------TNEVSQILKYCNSRL------LAVVPQGGNT 150 (423)
Q Consensus 117 p~~Vv~P~s------~eeV~~iv~~a~~~~------ipv~~~GgGt 150 (423)
...+++|.. +++|.+.++.+++.+ +=|++||||+
T Consensus 42 ~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 42 VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 345666654 688999999998654 5567788874
No 64
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=21.26 E-value=89 Score=31.75 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHHHhCCCeEEEe
Q 014546 125 TTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 125 s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
|.+|+..||++|++++|.|+|-
T Consensus 68 T~~di~eiv~yA~~rgI~vIPE 89 (348)
T cd06562 68 TPEDVKEIVEYARLRGIRVIPE 89 (348)
T ss_pred CHHHHHHHHHHHHHcCCEEEEe
Confidence 8999999999999999999985
No 65
>KOG3282 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.45 E-value=1.5e+02 Score=27.60 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=30.2
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEE
Q 014546 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVP 145 (423)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~ 145 (423)
..-|.|..||...+++++.++.+.|++.+++...
T Consensus 120 e~~GQ~KIvvk~~~e~~l~~l~~~A~~~gl~t~~ 153 (190)
T KOG3282|consen 120 ENCGQAKIVVKAESEEELMELQKDAKKLGLYTHL 153 (190)
T ss_pred HHcCCceEEEEcCCHHHHHHHHHHHHHcCCcEEE
Confidence 4568899999999999999999999999987643
No 66
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=20.42 E-value=1.6e+02 Score=31.38 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=21.0
Q ss_pred ccccceEeEEEEEeCCCcEEEccCC
Q 014546 234 GSLHGNVLGLEAVLANGDVIDMLGT 258 (423)
Q Consensus 234 G~~~d~V~~levVl~dG~iv~~~~~ 258 (423)
-..+..|.++.+|..||+|+++...
T Consensus 304 SCVRGqV~SiTFVF~DGtirTvp~~ 328 (472)
T TIGR03752 304 SCVRGQVRSLTFVFNDGTIRTVPRP 328 (472)
T ss_pred EEEeeeEEEEEEEEeCCeEEEecCC
Confidence 3477899999999999999997643
No 67
>smart00361 RRM_1 RNA recognition motif.
Probab=20.40 E-value=2.4e+02 Score=21.09 Aligned_cols=39 Identities=10% Similarity=0.098 Sum_probs=25.5
Q ss_pred CeeEEEEEE-EEcccC---CceeeEEEEEcCCHHHHHHHHHHH
Q 014546 278 SLGIVTKVS-IHTPPK---LSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 278 tlGIIt~~t-l~l~p~---p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|-|+++. +...+. +......++.|.+.+++.+|+..+
T Consensus 15 ~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l 57 (70)
T smart00361 15 YFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDL 57 (70)
T ss_pred hcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHh
Confidence 455566664 333221 334566889999999999988876
No 68
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane]
Probab=20.26 E-value=7.1e+02 Score=26.24 Aligned_cols=67 Identities=19% Similarity=0.276 Sum_probs=45.9
Q ss_pred HHHHHHHHhhCC-CcEe------cChhH--HHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCC
Q 014546 81 EDVSYFKELLGE-KSVI------QDEDV--LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGN 149 (423)
Q Consensus 81 ~~l~~L~~ilg~-~~v~------~~~~~--l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgG 149 (423)
...+.++..++. ..+. .++++ ++.+. .+ .........++.|+.+|-..++.+.|.++|+++..|+.|
T Consensus 218 ~~~~~~r~~l~~~r~v~iaaSTH~GEeei~l~~~~-~l-~~~~~~~llIlVPRHpERf~~v~~l~~~~gl~~~~rS~~ 293 (419)
T COG1519 218 AELAALRRQLGGHRPVWVAASTHEGEEEIILDAHQ-AL-KKQFPNLLLILVPRHPERFKAVENLLKRKGLSVTRRSQG 293 (419)
T ss_pred HHHHHHHHhcCCCCceEEEecCCCchHHHHHHHHH-HH-HhhCCCceEEEecCChhhHHHHHHHHHHcCCeEEeecCC
Confidence 346678888875 2222 12222 22222 11 223345788999999999999999999999999999987
Done!