Query 014546
Match_columns 423
No_of_seqs 306 out of 2487
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 13:32:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014546.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014546hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pm9_A Putative oxidoreductase 100.0 1.6E-60 5.5E-65 497.7 35.9 339 77-418 12-350 (476)
2 4bby_A Alkyldihydroxyacetoneph 100.0 7.9E-52 2.7E-56 447.7 35.8 263 77-343 159-434 (658)
3 2uuu_A Alkyldihydroxyacetoneph 100.0 1.7E-49 5.9E-54 423.4 32.1 328 78-417 90-447 (584)
4 1f0x_A DLDH, D-lactate dehydro 100.0 2.7E-50 9.3E-55 427.7 23.9 329 80-417 10-445 (571)
5 1e8g_A Vanillyl-alcohol oxidas 100.0 1.4E-47 4.8E-52 407.6 28.0 328 81-417 23-412 (560)
6 1wvf_A 4-cresol dehydrogenase 100.0 5.7E-46 1.9E-50 392.1 29.4 322 81-410 19-371 (520)
7 2exr_A Cytokinin dehydrogenase 100.0 8.3E-47 2.8E-51 398.7 16.4 318 80-413 28-378 (524)
8 1w1o_A Cytokinin dehydrogenase 100.0 1.2E-44 4.1E-49 383.2 17.3 321 79-411 31-391 (534)
9 3tsh_A Pollen allergen PHL P 4 100.0 7.9E-37 2.7E-41 320.9 20.3 231 80-317 9-250 (500)
10 3rja_A Carbohydrate oxidase; p 100.0 7.6E-35 2.6E-39 303.8 20.9 217 93-316 13-233 (473)
11 1hsk_A UDP-N-acetylenolpyruvoy 100.0 2.6E-37 8.9E-42 308.1 0.7 267 78-384 14-300 (326)
12 2bvf_A 6-hydroxy-D-nicotine ox 100.0 1.4E-34 4.6E-39 300.9 19.6 211 99-318 21-235 (459)
13 2vfr_A Xylitol oxidase, aldito 100.0 9.7E-35 3.3E-39 298.9 17.4 212 107-337 11-223 (422)
14 3fw9_A Reticuline oxidase; BI- 100.0 1.2E-34 4.2E-39 303.5 17.9 203 106-317 35-242 (495)
15 4feh_A Oxidoreductase DPRE1; a 100.0 6.3E-34 2.1E-38 297.3 20.6 204 105-315 32-238 (481)
16 3vte_A Tetrahydrocannabinolic 100.0 7E-34 2.4E-38 298.9 20.4 206 107-319 44-252 (518)
17 1zr6_A Glucooligosaccharide ox 100.0 6.6E-34 2.3E-38 298.9 19.0 224 83-315 6-235 (503)
18 2wdx_A Putative hexose oxidase 100.0 1.4E-33 4.7E-38 297.7 20.7 202 100-304 40-258 (523)
19 2ipi_A Aclacinomycin oxidoredu 100.0 2.9E-33 1E-37 295.1 20.9 201 91-294 29-245 (521)
20 3pop_A GILR oxidase; FAD bindi 100.0 3.4E-33 1.2E-37 293.1 19.3 197 88-289 6-208 (501)
21 2y3s_A TAML; oxidoreductase; H 100.0 3E-32 1E-36 287.8 22.3 192 98-294 40-249 (530)
22 3tx1_A UDP-N-acetylenolpyruvoy 100.0 2.6E-31 8.8E-36 264.1 13.6 274 78-383 20-305 (322)
23 3js8_A Cholesterol oxidase; ch 100.0 1.1E-30 3.8E-35 274.3 17.8 194 106-311 19-235 (540)
24 2i0k_A Oxidoreductase; MIX alp 100.0 1E-30 3.5E-35 277.9 16.6 200 102-312 21-240 (561)
25 1uxy_A MURB, uridine diphospho 99.9 4.6E-26 1.6E-30 227.9 19.9 203 102-320 3-215 (340)
26 3i99_A UDP-N-acetylenolpyruvoy 99.9 2.4E-26 8.3E-31 230.9 16.8 203 100-320 17-230 (357)
27 2gqt_A UDP-N-acetylenolpyruvyl 99.9 7E-25 2.4E-29 212.4 10.4 230 101-372 10-249 (268)
28 2yvs_A Glycolate oxidase subun 99.9 3.6E-24 1.2E-28 201.7 10.1 127 175-306 2-128 (219)
29 1ffv_C CUTM, flavoprotein of c 98.6 9.2E-08 3.1E-12 93.2 9.9 156 117-292 5-177 (287)
30 2w3s_A Xanthine dehydrogenase; 97.9 4.5E-06 1.6E-10 86.4 4.0 151 115-291 175-345 (462)
31 1n62_C Carbon monoxide dehydro 97.9 1.4E-05 4.8E-10 77.7 6.9 147 117-291 5-176 (288)
32 3nvz_B Xanthine dehydrogenase/ 97.9 3.7E-05 1.3E-09 75.3 9.7 129 113-251 6-157 (305)
33 1t3q_C Quinoline 2-oxidoreduct 97.4 0.00011 3.9E-09 71.3 5.4 121 117-251 5-143 (288)
34 3hrd_C Nicotinate dehydrogenas 97.0 0.00028 9.5E-09 68.8 2.6 103 118-224 4-118 (296)
35 1rm6_B 4-hydroxybenzoyl-COA re 95.4 0.0033 1.1E-07 62.0 0.8 98 118-223 7-118 (324)
36 3unc_A Xanthine dehydrogenase/ 95.1 0.036 1.2E-06 64.1 8.2 107 114-225 230-356 (1332)
37 3zyv_A AOH1; oxidoreductase, m 87.1 0.19 6.5E-06 58.2 1.7 104 116-224 239-362 (1335)
38 2dnh_A Bruno-like 5, RNA bindi 36.6 62 0.0021 24.7 5.6 47 266-316 30-76 (105)
39 3ulh_A THO complex subunit 4; 36.4 59 0.002 24.9 5.4 46 267-316 45-90 (107)
40 2do4_A Squamous cell carcinoma 35.2 67 0.0023 24.3 5.6 47 266-316 32-78 (100)
41 1xty_A PTH, peptidyl-tRNA hydr 34.5 72 0.0025 26.1 5.8 45 103-149 43-88 (120)
42 1rzw_A Protein AF2095(GR4); be 34.0 58 0.002 27.0 5.2 42 106-149 40-82 (123)
43 2ywk_A Putative RNA-binding pr 33.4 59 0.002 24.2 4.9 47 266-316 31-77 (95)
44 3s8s_A Histone-lysine N-methyl 31.8 78 0.0027 24.9 5.5 47 266-316 21-68 (110)
45 2do0_A HnRNP M, heterogeneous 31.4 80 0.0027 24.4 5.5 47 266-316 30-76 (114)
46 1jmt_A Splicing factor U2AF 35 29.3 75 0.0026 24.8 5.0 40 277-316 49-88 (104)
47 1wn2_A Peptidyl-tRNA hydrolase 28.5 63 0.0021 26.6 4.5 38 112-149 51-89 (121)
48 2d9p_A Polyadenylate-binding p 27.0 1.1E+02 0.0037 23.2 5.5 46 266-316 30-75 (103)
49 1x5o_A RNA binding motif, sing 25.6 1.2E+02 0.0042 23.3 5.7 47 266-316 40-86 (114)
50 2cqc_A Arginine/serine-rich sp 25.4 1.2E+02 0.0041 22.4 5.4 46 267-316 31-77 (95)
51 2pe8_A Splicing factor 45; RRM 25.1 99 0.0034 24.2 5.0 62 267-332 29-93 (105)
52 1yht_A DSPB; beta barrel, hydr 24.7 46 0.0016 32.7 3.5 23 124-146 92-114 (367)
53 1rlk_A Hypothetical protein TA 23.5 96 0.0033 25.2 4.7 38 112-149 47-85 (117)
54 2dhg_A TRNA selenocysteine ass 23.1 94 0.0032 23.5 4.4 46 267-316 25-71 (104)
55 2r2z_A Hemolysin; APC85144, en 22.8 85 0.0029 24.0 4.0 40 180-226 15-54 (93)
56 3bs9_A Nucleolysin TIA-1 isofo 22.2 1.6E+02 0.0053 21.3 5.4 47 266-316 21-68 (87)
57 3md3_A Nuclear and cytoplasmic 21.6 1.3E+02 0.0043 24.4 5.2 46 267-316 16-61 (166)
58 4fxv_A ELAV-like protein 1; RN 21.5 1.5E+02 0.0051 22.6 5.3 64 248-316 17-81 (99)
59 3ue2_A Poly(U)-binding-splicin 21.4 1.1E+02 0.0038 24.6 4.7 58 277-334 47-110 (118)
60 3md1_A Nuclear and cytoplasmic 21.2 1.6E+02 0.0054 21.0 5.2 46 267-316 17-63 (83)
61 2zv3_A PTH, peptidyl-tRNA hydr 21.1 97 0.0033 25.1 4.2 31 113-143 46-76 (115)
62 3nmr_A Cugbp ELAV-like family 20.9 1.4E+02 0.0048 24.4 5.4 47 267-317 111-157 (175)
63 3lae_A UPF0053 protein HI0107; 20.7 1.4E+02 0.0046 22.3 4.7 42 179-227 7-48 (81)
64 1p27_B RNA-binding protein 8A; 20.7 1.7E+02 0.0057 22.1 5.5 46 267-316 39-85 (106)
65 2dnz_A Probable RNA-binding pr 20.5 1.5E+02 0.0052 21.8 5.1 47 266-316 20-67 (95)
66 2cq3_A RNA-binding protein 9; 20.1 1.3E+02 0.0044 22.7 4.6 46 266-316 30-75 (103)
No 1
>3pm9_A Putative oxidoreductase; putative D-2-hydroxyglutarate dehydrogenase, putative D-LACT dehydrogenase; HET: FAD; 2.57A {Rhodopseudomonas palustris}
Probab=100.00 E-value=1.6e-60 Score=497.65 Aligned_cols=339 Identities=39% Similarity=0.635 Sum_probs=313.1
Q ss_pred CCCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc
Q 014546 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS 156 (423)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~ 156 (423)
.++++++++|++++|+++|+++++.+..|++||+..+.+.|.+|++|+|++||+++|++|+++++|++|+|||||+.|++
T Consensus 12 ~~~~~~~~~L~~~lg~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~eeV~~~v~~a~~~~~pv~~~GgGt~~~g~~ 91 (476)
T 3pm9_A 12 TLSPELIARFTAIVGDKHALTDPLELEAYITEERNLYRGHSPLVLRPGSTEEVVAICKLANEARVALVPQGGNTGLVGGQ 91 (476)
T ss_dssp CCCHHHHHHHHHHHCGGGEECSHHHHHHHHBCTTCCCBCCCSCEECCCSHHHHHHHHHHHHHHTCCEEEESSSCCSSSTT
T ss_pred cCCHHHHHHHHHhcCCCcEecCHHHHHHHhcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEEeCCCCCCCCc
Confidence 37788999999999999999999999999999988889999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccc
Q 014546 157 VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSL 236 (423)
Q Consensus 157 ~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~ 236 (423)
+|..++++|||++||+|+++|+++.+++||||++|.+|+++|.++|+.||++|++...+||||++++|+||.++.+||.+
T Consensus 92 ~~~~ggvvIdl~~m~~i~~id~~~~~v~V~aGv~~~~l~~~l~~~Gl~~~~~~~s~~~~tvGG~ia~nagG~~~~~yG~~ 171 (476)
T 3pm9_A 92 TPHNGEVVISLKRMDKIREIDTSSNTITVEAGAILQRVQEKAAEVDRLFPLSLGAQGSCTIGGNLSTNAGGTAALAYGLA 171 (476)
T ss_dssp CCCSSCEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTTTTCBHHHHHHHTCCCTTHHHHCCH
T ss_pred cCCCCcEEEEeeCCCceEEEcCCCCeEEECCCcCHHHHHHHHHHhCCccCCCCCCCCcEEEccccCCCCCCCcccccCcH
Confidence 98778999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred cceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 237 HGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 237 ~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|+|+++++|++||++++++....|++.||||+++++||+|+|||||+++||++|.|+...+.++.|++++++.+++..+
T Consensus 172 ~d~V~~levV~~dG~v~~~~~~~~k~~~g~dl~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~ 251 (476)
T 3pm9_A 172 RDMALGVEVVLADGRVMNLLSKLKKDNTGYDLRDLFIGAEGTLGIITAATLKLFPKPRAVETAFVGLQSPDDALKLLGIA 251 (476)
T ss_dssp HHHEEEEEEECTTSCEEECCCCCSCCCSSCCCHHHHTTSTTSSCEEEEEEEECEECCSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHheeEEEEEccCCeEEEcCCcccCCCCCcCHHHHhccCCCCcEEEEEEEEEEeecCceeEEEEEEcCCHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999999999999999999999999888899999999999999999
Q ss_pred HHHcCCCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceeEEeCCH
Q 014546 317 KRKLGEILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDI 396 (423)
Q Consensus 317 ~~~~~~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~d~ 396 (423)
++..+..|+++||||+.++++++++ ++...|+++. .+++||||++|+++ +++++++++++.+.+.+...+..+++++
T Consensus 252 ~~~~g~~p~a~El~d~~~~~~~~~~-~~~~~~~~~~-~~~~llve~~g~~~-~~~~~~~~~~~~~~~~g~~~~~~~a~~~ 328 (476)
T 3pm9_A 252 QGEAAGNLTSFELIAETPLDFSVRH-ANNRDPLEAR-YPWYVLIELSSPRD-DARAALESILERGFEDGIVVDAAIANSV 328 (476)
T ss_dssp HHHHGGGEEEEEEEEHHHHHHHHHH-TTCCCCSSSC-CSEEEEEEEEESSS-CHHHHHHHHHHHHHHTTCCCEEEECCSH
T ss_pred HHhcCCCceEEEecCHHHHHHHHhc-cCCCCCCCcc-CCeEEEEEEccCcH-HHHHHHHHHHHHHHhcCCCcceEEeCCH
Confidence 8666788999999999999999887 3555666543 46899999999874 4566678888888777766789999999
Q ss_pred HHHHHHHHHHhhhhHHHhhccC
Q 014546 397 NQASSFWRIRELITGYSRSINE 418 (423)
Q Consensus 397 ~~~~~lW~~R~~~~~a~~~~~~ 418 (423)
+++++||++|+.++++.+..++
T Consensus 329 ~~~~~lW~~R~~~~~~~~~~g~ 350 (476)
T 3pm9_A 329 QQQQAFWKLREEISPAQKPEGG 350 (476)
T ss_dssp HHHHHHHHHHHTHHHHTGGGCC
T ss_pred HHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999999999998877654
No 2
>4bby_A Alkyldihydroxyacetonephosphate synthase, peroxiso; transferase, plasmalogen, flavin, peroxisome; HET: FAD; 1.90A {Cavia porcellus} PDB: 4bc9_A* 4bca_A* 4bc7_A*
Probab=100.00 E-value=7.9e-52 Score=447.72 Aligned_cols=263 Identities=21% Similarity=0.290 Sum_probs=238.8
Q ss_pred CCCHHHHHHHHHhhCCCcEecChhHHHHhhcc---------cccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeC
Q 014546 77 TLNSEDVSYFKELLGEKSVIQDEDVLLAANED---------WMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (423)
Q Consensus 77 ~~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d---------~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~G 147 (423)
.++++++++|+++++. +.++.+++..|+++ |.+.|+..|++||+|+|++||+++|++|+++++||+|+|
T Consensus 159 ~~~~~~~~~l~~~~~~--~~~~~~~r~~h~~g~s~~d~~~~~~g~~~~~P~aVV~P~s~eeV~~iv~~A~~~~ipVvprG 236 (658)
T 4bby_A 159 IVNEDFLHELKKTNIS--YSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIG 236 (658)
T ss_dssp CCCHHHHHHHHHHTCE--EECCHHHHHHTSCCSCHHHHHHHHSSCCSCCCSEEEECCSHHHHHHHHHHHHHTTCEEEEES
T ss_pred CCCHHHHHHHHHhccc--ccCchHHHhhhcCCCCHHHHHHHhCCcccCCcCEEEeeCCHHHHHHHHHHHHHCCCeEEEEC
Confidence 3667899999999875 45666665555432 456778889999999999999999999999999999999
Q ss_pred CCccCCCCcccc----CCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceecccccc
Q 014546 148 GNTGLVGGSVPV----FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVST 223 (423)
Q Consensus 148 gGt~l~g~~~~~----~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~ 223 (423)
||||+.|+..+. .++|+|||++||+|++||+++.+++|||||++.+|+++|.++|++||++|++.+.|||||+|++
T Consensus 237 gGTsl~GG~~~~~~~~~ggVvLDlsrMnrIleiD~~~~~atVeaGv~~~~L~~~L~~~Gl~lp~dP~S~~~aTIGG~iAt 316 (658)
T 4bby_A 237 GGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWIST 316 (658)
T ss_dssp SCCCSSSTTCCCTTCCSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHHTEECCCCCTTTTTCBHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCCcEEEEECccCCCcEEEcCCCCEEEEecCchHHHHHHHHHHcCCccCCCCCCccccEEeehhhc
Confidence 999999987763 3579999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEc
Q 014546 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC 303 (423)
Q Consensus 224 nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~ 303 (423)
|++|.++.+||.++|+|+++|||++||++++.+. ..|+++||||+++|+||||||||||+++|||+|.|+...+.++.|
T Consensus 317 na~G~~s~rYG~~~d~VlgleVVlpdG~i~~~~~-~~k~~aGyDL~~L~iGSEGTLGIITeatLrL~P~P~~~~~~~~~f 395 (658)
T 4bby_A 317 RASGMKKNIYGNIEDLVVHMKVVTPRGVIEKSCQ-GPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPTPEYQKYGSVAF 395 (658)
T ss_dssp TCCCTTHHHHCCHHHHEEEEEEEETTEEEECSCC-CSSCCSSSCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEE
T ss_pred CCCCCCccCcCCHHHheeeEEEEeCCCccccccc-ccccCCCcCHHHHhccCCCcCcceeeeeeeeccCCcccccccccc
Confidence 9999999999999999999999999999988654 468899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhcc
Q 014546 304 KDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLE 343 (423)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~ 343 (423)
+|++++.+++.++.+ .+..|+++||||+..+++.....+
T Consensus 396 ~d~~~a~~av~~i~~-~~~~psa~El~D~~~~~~~~~~~~ 434 (658)
T 4bby_A 396 PNFEQGVACLREIAK-QRCAPASIRLMDNQQFQFGHALKP 434 (658)
T ss_dssp SSHHHHHHHHHHHHH-TTCCCSEEEEECHHHHHHHHHTSS
T ss_pred CCchhhhhhHHHHHH-cCCCccccccccHHHHHHHHhhcc
Confidence 999999999999875 477899999999999998877643
No 3
>2uuu_A Alkyldihydroxyacetonephosphate synthase; transferase, lavoprotein, lipid synthesis, peroxisomal disor; HET: FAD PL3; 1.95A {Dictyostelium discoideum} PDB: 2uuv_A*
Probab=100.00 E-value=1.7e-49 Score=423.43 Aligned_cols=328 Identities=17% Similarity=0.278 Sum_probs=273.1
Q ss_pred CCHHHHHHHHHhh-CCCcEecChhHHHHhhcc-----ccc----ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeC
Q 014546 78 LNSEDVSYFKELL-GEKSVIQDEDVLLAANED-----WMR----KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQG 147 (423)
Q Consensus 78 ~~~~~l~~L~~il-g~~~v~~~~~~l~~y~~d-----~~~----~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~G 147 (423)
|+++++++|++++ | ++|.+++..+..|++| |.. .+...|.+|++|+|++||+++|++|+++++||+|+|
T Consensus 90 ~~~~~~~~L~~~l~g-~~v~~~~~~~~~y~~d~~~~~~~~~~~g~~~~~p~~vv~P~s~eeV~~iv~~a~~~~~pv~~~G 168 (584)
T 2uuu_A 90 QYPEFVRELKAFFLP-DQLKDDKLARITHTFGKSLRDLIRVRIGQVKNAPDLIVLPHSHEEVERLVQLAHKYNVVIIPMG 168 (584)
T ss_dssp CCHHHHHHHHTTSCG-GGEECSHHHHHHTTCCSSHHHHHHHHTTCCCCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEES
T ss_pred CCHHHHHHHHhhcCC-CeEEECHHHHHHhccCCchhhhhhhccCccCCCCCEEEeCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 5678999999999 8 8899999887778764 221 245689999999999999999999999999999999
Q ss_pred CCccCCCCcccc---CCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccC
Q 014546 148 GNTGLVGGSVPV---FDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 148 gGt~l~g~~~~~---~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~n 224 (423)
||||+.|+++|. .++|+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.+|++|++...+||||++++|
T Consensus 169 gGts~~gg~~~~~~~~g~vvidl~~mn~I~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~p~s~~~~tvGG~ia~n 248 (584)
T 2uuu_A 169 GGSNIVGAIEPVSNERFTVSIDMRRMNKVLWVDRREMTACIQVGIMGPELEKQLHKQGVSLGHDPDSFEFSTLGGWLATC 248 (584)
T ss_dssp SCCCSSCTTSCCCCSSCEEEEECTTCCCEEEEETTTTEEEEETTCBHHHHHHHHHHTTEECCCCCTTGGGCBHHHHHHHT
T ss_pred CCCCCCCCCcccCCCCCEEEEECCCCCccEEEcCCCCEEEECCCCcHHHHHHHHHHcCCeeCcCCCccCCeeEeeeccCC
Confidence 999999998875 46899999999999999999999999999999999999999999999999888889999999999
Q ss_pred CCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcC
Q 014546 225 AGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK 304 (423)
Q Consensus 225 agG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~ 304 (423)
++|.++.+||.++|+|+++|||++||++++. ...+++.||||+++++||+|+|||||+++||++|.|+...+..+.|+
T Consensus 249 a~G~~~~~yG~~~d~V~~levVl~dG~i~~~--~~~~~~~g~dl~~~~~GseGtlGIIT~~tlrl~p~p~~~~~~~~~f~ 326 (584)
T 2uuu_A 249 SSGHQSDKYGDIEDMAVSFRTVTPTGTLELR--NGARSGAGINYKHIILGSEGTLGIITEAVMKVHAVPQAVEYYGFLFP 326 (584)
T ss_dssp CCCTTHHHHCCHHHHEEEEEEEETTEEECCC---------CCCTHHHHTTCTTSSCEEEEEEEECEECCSEEEEEEEEES
T ss_pred CCcccccCcCcHHHheeeEEEEeCCCCEEEC--CccccCCCcchhhhhccCCCCcEEEEEEEEEEEecccceEEEEEEcC
Confidence 9999999999999999999999999997652 23367899999999999999999999999999999998888899999
Q ss_pred CHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhhccC--CC---------------CCCCCCccceEEEEEecCCCh
Q 014546 305 DYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTYLEG--VR---------------NPFSSSMHNFYVLIETTGSEE 367 (423)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~~~~--~~---------------~~~~~~~~~~~llie~~g~~~ 367 (423)
+++++.+++.++.+ .+..|+++|+||+..+++...+.+. .. .+++.. ..+++++|+.|+++
T Consensus 327 ~~~~a~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~llve~~g~~~ 404 (584)
T 2uuu_A 327 TFAHAVSALQQIRS-SEVIPTMIRVYDPEETQLSFAWKPSKGAVSEFTSAMVKKYLHYIRSFDFK-NVCLSIIGFEGPKK 404 (584)
T ss_dssp SHHHHHHHHHHHHH-HTCCCSEEEEECHHHHHHHHHTCCSCCCTTCCHHHHHHHHHHHTTTSCTT-TCEEEEEEEEECHH
T ss_pred CHHHHHHHHHHHHh-cCCCceEEEEechhHHHHHhhccCcccccchhhhhhHHHhhhhccCCCCC-ccEEEEEEEecChH
Confidence 99999999999876 4778999999999988754332111 00 133322 45899999999754
Q ss_pred HHHHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhhHHHhhcc
Q 014546 368 SYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELITGYSRSIN 417 (423)
Q Consensus 368 ~~~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~~a~~~~~ 417 (423)
.++++++++.+.+.+.+... .. ++..++|+.|+...+++....
T Consensus 405 -~v~~~~~~~~~~~~~~g~~~---~~---~~~~~lW~~r~~~~~~l~~~~ 447 (584)
T 2uuu_A 405 -VVDFHRTSVFDILSKNAAFG---LG---SAPGKTWAEKRYDLPYIRDFL 447 (584)
T ss_dssp -HHHHHHHHHHHHHHTTTCEE---EE---EESTTHHHHGGGGHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHCCCcc---ch---HHHHHHHHHhhhchHHHHhhh
Confidence 55666777777666665432 22 256789999999999887653
No 4
>1f0x_A DLDH, D-lactate dehydrogenase; oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: d.58.32.2 d.145.1.1
Probab=100.00 E-value=2.7e-50 Score=427.73 Aligned_cols=329 Identities=18% Similarity=0.238 Sum_probs=276.6
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV 159 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~ 159 (423)
.+++++|++++|+.+|.+++..+..|++||+ .+.+.|.+|++|+|++||+++|++|+++++||+|+|||||+.|+++|.
T Consensus 10 ~~~~~~L~~~~g~~~v~~~~~~~~~y~~d~~-~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~~v~~~GgGt~~~G~~~~~ 88 (571)
T 1f0x_A 10 KAFLNELARLVGSSHLLTDPAKTARYRKGFR-SGQGDALAVVFPGSLLELWRVLKACVTADKIILMQAANTGLTEGSTPN 88 (571)
T ss_dssp HHHHHHHHHHHCGGGEECCHHHHHHHHBCSS-SCBBCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCSSSTTSCC
T ss_pred HHHHHHHHHhcCCCeEEcCHHHHHHHhcccc-ccCCCccEEEeeCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCccCC
Confidence 3578999999998899999989999999996 678899999999999999999999999999999999999999999886
Q ss_pred CC-----eEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCC-CcceeccccccCCCCCCcccc
Q 014546 160 FD-----EVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAK-GSCQIGGNVSTNAGGLRLVRY 233 (423)
Q Consensus 160 ~~-----gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~-~~~tIGG~va~nagG~~~~~y 233 (423)
.+ +++|||++||+|+++|+ +.+++||||+++.+|+++|.++|+.+|++|++. ..+||||+|++|+||.++.+|
T Consensus 89 ~~~~~r~gvvIdl~rmn~I~~id~-~~~v~v~aGv~l~~L~~~l~~~Gl~~p~~~g~s~~~~tvGG~ia~nagG~~~~~y 167 (571)
T 1f0x_A 89 GNDYDRDVVIISTLRLDKLHVLGK-GEQVLAYPGTTLYSLEKALKPLGREPHSVIGSSCIGASVIGGICNNSGGSLVQRG 167 (571)
T ss_dssp BSCCSSCEEEEECTTCCCEEEETT-TTEEEECTTCBHHHHHHHHGGGTEECSCCCGGGGGTCBHHHHHHTTCCCSCTTSC
T ss_pred CcCCcCceEEEECcccCCceeECC-CCeEEEcCCcCHHHHHHHHHhcCccCCcCCCccCCCceecccccCCCCcccccCC
Confidence 53 89999999999999995 678999999999999999999999998888754 356999999999999999999
Q ss_pred ccccc----------------eEeEEEEEeCCCcEEEccCCcc------------cCCCCC-----------------Cc
Q 014546 234 GSLHG----------------NVLGLEAVLANGDVIDMLGTLR------------KDNTGY-----------------DL 268 (423)
Q Consensus 234 G~~~d----------------~V~~levVl~dG~iv~~~~~~~------------k~~~G~-----------------dL 268 (423)
|.++| +|+++++|++||++++++.... |+++|| ||
T Consensus 168 G~~~d~~~~~~~~~~~~l~~~~vl~levVl~dG~i~~~~~~~~~~~~~~~~~~~~k~~~Gy~~~~~~~d~~~p~~~~~Dl 247 (571)
T 1f0x_A 168 PAYTEMSLFARINEDGKLTLVNHLGIDLGETPEQILSKLDDDRIKDDDVRHDGRHAHDYDYVHRVRDIEADTPARYNADP 247 (571)
T ss_dssp SSCCSCEEEEEECTTSCEEEEECSSBCCCSSHHHHHHHHHTTCCCGGGBCCCSCCSSCTTHHHHHHCTTCSSCSCCTTCG
T ss_pred CchhhhhhhheeccCCceEEEEeeeEEEEcCCCcEEEecCccccccchhhhcccccccCCcccccccccccccccccccH
Confidence 99999 9999999999999998775432 678899 99
Q ss_pred cccc--ccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceEEEeeCHHHHHHHHhh-----
Q 014546 269 KHLF--IGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSAFEFLDNQSMDLVLTY----- 341 (423)
Q Consensus 269 ~~l~--~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~----- 341 (423)
+++| +||+|+||| |+++|+++|.|+...++++.|++++++.+++..+.+..+..|.++|+||+..++++.++
T Consensus 248 ~~l~~a~GseGtlGV-t~~tl~l~p~p~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~p~a~E~~d~~~~~~~~~~~~~~~ 326 (571)
T 1f0x_A 248 DRLFESSGCAGKLAV-FAVRLDTFEAEKNQQVFYIGTNQPEVLTEIRRHILANFENLPVAGEYMHRDIYDIAEKYGKDTF 326 (571)
T ss_dssp GGCCSSTTCTTSSEE-EEEEEECEECCSSCEEEEEEESCHHHHHHHHHHHHHHCSSCCSEEEEEEHHHHHHHC-------
T ss_pred HHHHHhcCCCCceeE-EEEEEEEEecCCeEEEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHhccccc
Confidence 9999 999999999 99999999999988888999999999999999997556778999999999999988665
Q ss_pred -----ccCCCC-----------------CC-C--------------------------CCccceEEEEEecCCChHHHHH
Q 014546 342 -----LEGVRN-----------------PF-S--------------------------SSMHNFYVLIETTGSEESYDRE 372 (423)
Q Consensus 342 -----~~~~~~-----------------~~-~--------------------------~~~~~~~llie~~g~~~~~~~~ 372 (423)
...... |+ + +...+++||+|+.|.++++..+
T Consensus 327 ~~i~~~~~~~~p~~~~~k~~~~~~~~~~p~l~~~~~~~~~~~~~~~~p~~~p~~~~~~~~~~~~~llve~~g~~~~~~~~ 406 (571)
T 1f0x_A 327 LMIDKLGTDKMPFFFNLKGRTDAMLEKVKFFRPHFTDRAMQKFGHLFPSHLPPRMKNWRDKYEHHLLLKMAGDGVGEAKS 406 (571)
T ss_dssp --------------------------------------------------CCHHHHHHHHHCSEEEEEEECTTHHHHHHH
T ss_pred ccccccCcccccchhcccchhhhhhcccccccccchhhhhhhhhhccccccchhhhcccccCceEEEEEEecCcHHHHHH
Confidence 211111 11 0 0114589999999988776667
Q ss_pred HHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhhHHHhhcc
Q 014546 373 KLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELITGYSRSIN 417 (423)
Q Consensus 373 ~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~~a~~~~~ 417 (423)
+++++++.+ .+ ..+..+.++.++.|..|+...++.-..+
T Consensus 407 ~l~~~~~~~--~g----~~~~~~~~~~~~~~~~R~~~~~~~~~~r 445 (571)
T 1f0x_A 407 WLVDYFKQA--EG----DFFVCTPEEGSKAFLHRFAAAGAAIRYQ 445 (571)
T ss_dssp HHHHHHHHS--SC----EEEECCHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHc--CC----CeeecCccHHHHHHHHhhhhhhHHHHhh
Confidence 777776644 22 1222367777888888888776554444
No 5
>1e8g_A Vanillyl-alcohol oxidase; oxidoreductase, flavoenzyme, specificity; HET: FAD FCR; 2.1A {Penicillium simplicissimum} SCOP: d.58.32.1 d.145.1.1 PDB: 1e8f_A* 1e8h_A* 1qlt_A* 1qlu_A* 1vao_A* 1ahv_A* 1ahz_A* 1ahu_A* 2vao_A* 1w1j_A* 1dzn_A* 1w1l_A* 1e0y_A* 1w1k_A* 1w1m_A*
Probab=100.00 E-value=1.4e-47 Score=407.59 Aligned_cols=328 Identities=18% Similarity=0.183 Sum_probs=262.0
Q ss_pred HHHHHHHHhhCCCcEecChhHHHH----hhcc------ccc--ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCC
Q 014546 81 EDVSYFKELLGEKSVIQDEDVLLA----ANED------WMR--KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGG 148 (423)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~----y~~d------~~~--~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~Gg 148 (423)
.++++|++++|+++|.+++..+.. |++| |+. .+.+.|.+|++|+|++||+++|++|+++++||+|+|+
T Consensus 23 ~~~~~L~~~~g~~~v~~d~~~~~~~~~~y~~d~~~~d~~~~~~~~~~~p~~Vv~P~s~~eV~~iv~~a~~~~~pv~~~g~ 102 (560)
T 1e8g_A 23 EFIQDIIRIVGSENVEVISSKDQIVDGSYMKPTHTHDPTHVMDQDYFLASAIVAPRNVADVQSIVGLANKFSFPLWPISI 102 (560)
T ss_dssp HHHHHHHHHHCGGGEEECC-----CCBCSSSBCSSSCSSCCSCTTSSCCSEEECCSSHHHHHHHHHHHHHHTCCEEEESS
T ss_pred HHHHHHHHhhCcccEecCHHHhhhhhhhhccccccccccccccccccCCcEEEeCCCHHHHHHHHHHHHHcCCcEEEecC
Confidence 468899999999999999998888 8877 554 4678899999999999999999999999999999999
Q ss_pred CccCC-CCccc-cCCeEEEEc-CCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC--cccCCCCCCcceecccccc
Q 014546 149 NTGLV-GGSVP-VFDEVIINM-GSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI--MPLDLGAKGSCQIGGNVST 223 (423)
Q Consensus 149 Gt~l~-g~~~~-~~~gvvIdl-s~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~--~~~~pgs~~~~tIGG~va~ 223 (423)
|||+. |+..| ..++|+||| ++||+|+++|+++.+++||||+++.+|+++|.++|+. +|++|++.+.+|+||++++
T Consensus 103 Gt~~~~gg~~p~~~~gvvidl~~~mn~il~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~tigG~~~~ 182 (560)
T 1e8g_A 103 GRNSGYGGAAPRVSGSVVLDMGKNMNRVLEVNVEGAYCVVEPGVTYHDLHNYLEANNLRDKLWLDVPDLGGGSVLGNAVE 182 (560)
T ss_dssp CCCTTTTTTCCSSTTCEEEECTTTCCCEEEEETTTTEEEECTTCBHHHHHHHHHHTTCTTTEECCCCSSTTSBHHHHHHT
T ss_pred CCcCCcCCCCCCcCCEEEEEchHhcCCeEEEcCCCCEEEEeCCCCHHHHHHHHHHcCCccccCCCCCCCCccchhhhccC
Confidence 99997 87776 578999999 9999999999999999999999999999999999999 9988888778999999999
Q ss_pred CCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccC-------------------------CCCCCcccccccCCCC
Q 014546 224 NAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD-------------------------NTGYDLKHLFIGSEGS 278 (423)
Q Consensus 224 nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~-------------------------~~G~dL~~l~~Gs~Gt 278 (423)
|++|.. +||.++|+|++++||++||++++++....++ ..||||.++|. +|+
T Consensus 183 ~g~g~~--~yG~~~d~v~~l~vVl~dG~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~Gy~l~~L~~--~Gt 258 (560)
T 1e8g_A 183 RGVGYT--PYGDHWMMHSGMEVVLANGELLRTGMGALPDPKRPETMGLKPEDQPWSKIAHLFPYGFGPYIDGLFS--QSN 258 (560)
T ss_dssp TCBCSS--TTCBTGGGEEEEEEEETTSCEEECGGGGSCCCCCGGGTTCCGGGSCCCTTTTTCSCCSSCCCGGGGS--SSS
T ss_pred CCCCcc--cceeHHHheeeeEEEeCCCCEEEecCcccCcccccccccchhhhhhhhcccccccccCCcchhcccc--cCc
Confidence 998864 9999999999999999999999988644443 45899999986 579
Q ss_pred eeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHH--cCCCceEEEeeCHHHHHHHH-----hhccCCCCCCCC
Q 014546 279 LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRK--LGEILSAFEFLDNQSMDLVL-----TYLEGVRNPFSS 351 (423)
Q Consensus 279 lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~E~~d~~~~~~~~-----~~~~~~~~~~~~ 351 (423)
|||||+++||++|.|+...++++.|++++++.+++..+++. .+..|+++||||... +++. .+. ....+++.
T Consensus 259 lGiIt~~tl~l~p~p~~~~~~~~~f~~~~~a~~~~~~~~~~~~~~~~p~~~el~d~~~-~~~~l~~~~~~~-~~~~~~p~ 336 (560)
T 1e8g_A 259 MGIVTKIGIWLMPNPGGYQSYLITLPKDGDLKQAVDIIRPLRLGMALQNVPTIRHILL-DAAVLGDKRSYS-SRTEPLSD 336 (560)
T ss_dssp SEEEEEEEEECEECCSCEEEEEEEECSTTHHHHHHHHHHHHHHTTSSCSCCEEEEHHH-HHHHHCCGGGTC-CCSSCCCH
T ss_pred EEEEEEEEEEEEeCCCceEEEEEEcCCHHHHHHHHHHHHHHHHcCCCcceeEEechHH-Hhhhhhhhhhhc-cCCCCCCH
Confidence 99999999999999999888899999999987776654432 356799999999985 3321 221 10012221
Q ss_pred C----------ccceEEEEEecCCChHHHHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhh---HHHhhcc
Q 014546 352 S----------MHNFYVLIETTGSEESYDREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELIT---GYSRSIN 417 (423)
Q Consensus 352 ~----------~~~~~llie~~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~---~a~~~~~ 417 (423)
. ...+++++|++|+ ++.++++++.+.+.+.+.+ ..+..++.+.++.+.||. |+.+. +++...+
T Consensus 337 ~~~~~l~~~~~~~~~~l~~e~~g~-~~~v~~~~~~i~~i~~~~~-~~~~~~~~~~~e~~~~w~-R~~~~~~~p~~~~~~ 412 (560)
T 1e8g_A 337 EELDKIAKQLNLGRWNFYGALYGP-EPIRRVLWETIKDAFSAIP-GVKFYFPEDTPENSVLRV-RDKTMQGIPTYDELK 412 (560)
T ss_dssp HHHHHHHHHHTCCSEEEEEEEESC-HHHHHHHHHHHHHHHTTST-TCEEECGGGSCTTCHHHH-HHHHTTTCCCCGGGG
T ss_pred HHHHHHHhhcCCCceEEEEEEeCC-HHHHHHHHHHHHHHHHhCC-CceeeccccchhhhhHHH-HHhhcccCchhhhhc
Confidence 1 1247899999995 4455555555555444444 355666777767778886 98876 5555553
No 6
>1wvf_A 4-cresol dehydrogenase [hydroxylating] flavoprote subunit; flavoprotein, electron-transfer, FAD, oxidoreductase; HET: FAD; 1.30A {Pseudomonas putida} SCOP: d.58.32.1 d.145.1.1 PDB: 1wve_A* 1dii_A* 1diq_A*
Probab=100.00 E-value=5.7e-46 Score=392.10 Aligned_cols=322 Identities=18% Similarity=0.211 Sum_probs=257.6
Q ss_pred HHHHHHHHhhCCCcEecChhHHHHhhcccccc--cCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCC-CCcc
Q 014546 81 EDVSYFKELLGEKSVIQDEDVLLAANEDWMRK--YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-GGSV 157 (423)
Q Consensus 81 ~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~--~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~-g~~~ 157 (423)
.++++|++++|++.|.+++..+..|++||+.. +.+.|.+|++|+|++||+++|++|+++++||+|+|+|||+. |++.
T Consensus 19 ~~~~~L~~~l~~~~v~~~~~~~~~y~~d~~~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~pv~~~g~G~~~~~g~~~ 98 (520)
T 1wvf_A 19 KAVQKFRALLGDDNVLVESDQLVPYNKIMMPVENAAHAPSAAVTATTVEQVQGVVKICNEHKIPIWTISTGRNFGYGSAA 98 (520)
T ss_dssp HHHHHHHHHHCGGGEECSHHHHHHHHCCCSSSCGGGGCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTTTTTS
T ss_pred HHHHHHHHhcCCCeEecCcHHHHHHhcccccccccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEEcCCCCCCCCCCC
Confidence 46889999999989999999999999998764 67889999999999999999999999999999999999997 7766
Q ss_pred c-cCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccC-CCCCCcceeccccccCCCCCCcccccc
Q 014546 158 P-VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLD-LGAKGSCQIGGNVSTNAGGLRLVRYGS 235 (423)
Q Consensus 158 ~-~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~-pgs~~~~tIGG~va~nagG~~~~~yG~ 235 (423)
| ..+||+|||++||+|+++|+++.+++||||+++.+|+++|.++|+.++++ +++.+.+||||++++|++|.. +||.
T Consensus 99 ~~~~~gvvidl~~m~~i~~id~~~~~v~v~aGv~~~~l~~~l~~~Gl~~~~~~~p~~~~~~igG~~~~~g~g~~--~yG~ 176 (520)
T 1wvf_A 99 PVQRGQVILDLKKMNKIIKIDPEMCYALVEPGVTFGQMYDYIQENNLPVMLSFSAPSAIAGPVGNTMDRGVGYT--PYGE 176 (520)
T ss_dssp CSSTTCEEEECTTCCCEEEEETTTTEEEECTTCCHHHHHHHHHHTTCSEECCCCSSCTTCCHHHHHHTTCBCSS--TTCB
T ss_pred CCCCCeEEEECCCCCceEEECCCCCEEEECCCCCHHHHHHHHHHcCCcccCCCCCCCCeeeeeecccCCCcCCc--cccc
Confidence 6 46899999999999999999999999999999999999999999999987 333458999999999999875 9999
Q ss_pred ccceEeEEEEEeCCCcEEEccCCccc---------CCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCH
Q 014546 236 LHGNVLGLEAVLANGDVIDMLGTLRK---------DNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (423)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~k---------~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~ 306 (423)
++|+|+++|||++||++++++....+ ...||||.++|+|+ +|||||+++||++|.|+....+++.|+++
T Consensus 177 ~~d~v~~~evV~~dG~v~~~~~~~~~~~~l~~~~~~~~Gy~l~~l~~g~--~lGiVt~~~l~l~p~p~~~~~~~~~f~~~ 254 (520)
T 1wvf_A 177 HFMMQCGMEVVLANGDVYRTGMGGVPGSNTWQIFKWGYGPTLDGMFTQA--NYGICTKMGFWLMPKPPVFKPFEVIFEDE 254 (520)
T ss_dssp GGGGEEEEEEECTTSCEEECGGGGSTTCSCTTTCSCCSSCCCHHHHTTS--SSCEEEEEEEECEECCSEEEEEEEEECCG
T ss_pred hhhcEeeeEEEcCCCcEEEeCCCcCCCchhHhhhcCCCCcchhhhccCC--ceEEEEEEEEEEEecCCeEEEEEEEeCCH
Confidence 99999999999999999998642222 24689999888754 99999999999999999888888899998
Q ss_pred HHHHHHH---HHHHHHcCCCceEEEeeCHHHHHHHHhhc--cC-C-CCCCCCC----------ccceEEEEEecCCChHH
Q 014546 307 FSCQKLL---REAKRKLGEILSAFEFLDNQSMDLVLTYL--EG-V-RNPFSSS----------MHNFYVLIETTGSEESY 369 (423)
Q Consensus 307 ~~~~~~~---~~~~~~~~~~~~a~E~~d~~~~~~~~~~~--~~-~-~~~~~~~----------~~~~~llie~~g~~~~~ 369 (423)
+++.+++ ..+++ .+..|+++|+||+..+.++.... +. . ...++.. ...+++++|+.|+. +.
T Consensus 255 ~~~~~~~~~~~~~~~-~~~~p~a~El~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g~~-~~ 332 (520)
T 1wvf_A 255 ADIVEIVDALRPLRM-SNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHTPDSVIKQMQKDTGMGAWNLYAALYGTQ-EQ 332 (520)
T ss_dssp GGHHHHHHHHHHHHH-TTSSCSCEEEEEHHHHHHHTTCCGGGTCCCSSSCCHHHHHHHHHHHCCCSEEEEEEEEESH-HH
T ss_pred HHHHHHHHHHHHHHH-cCCCccceEeccHHHHHHHhcccchhhccCCCCCCHHHHHHHHHhcCCCceEEEEEEeCCH-HH
Confidence 8766644 44443 36678999999999776664310 00 0 0112210 02468899999965 44
Q ss_pred HHHHHHHHHHHHhhCCCcceeEEeCCHHHHHHHHHHHhhhh
Q 014546 370 DREKLEAFLLSSMEGGLISDGVIAQDINQASSFWRIRELIT 410 (423)
Q Consensus 370 ~~~~l~~~~~~~~~~~~~~~~~~a~d~~~~~~lW~~R~~~~ 410 (423)
+++.++.+.+.+.+.+. .....+.+. +.+++|.+|+.+.
T Consensus 333 v~~~~~~i~~~~~~~~~-~~~~~~~~~-~~~~~w~~R~~~~ 371 (520)
T 1wvf_A 333 VDVNWKIVTDVFKKLGK-GRIVTQEEA-GDTQPFKYRAQLM 371 (520)
T ss_dssp HHHHHHHHHHHHHHHTC-CEEEEHHHH-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-eEEEecccc-hhhhHHHHHHHhh
Confidence 55555555554444442 344444444 5678999999877
No 7
>2exr_A Cytokinin dehydrogenase 7; AT5G21482.1, cytokinin oxidase/dehydrogenase, CKX, structura genomics, protein structure initiative; HET: MSE FAD; 1.70A {Arabidopsis thaliana} PDB: 2q4w_A*
Probab=100.00 E-value=8.3e-47 Score=398.72 Aligned_cols=318 Identities=14% Similarity=0.174 Sum_probs=252.9
Q ss_pred HHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHh-CCCeEEEeCCCccCCCCccc
Q 014546 80 SEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS-RLLAVVPQGGNTGLVGGSVP 158 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~-~~ipv~~~GgGt~l~g~~~~ 158 (423)
+.++++|+ + +.+|.+++..+..|++||...+.+.|.+|++|+|++||+++|++|++ +++||+|+|||||+.|++.+
T Consensus 28 ~~~~~~l~--~-~~~v~~d~~~~~~~~~d~~~~~~~~P~~vv~P~s~eeV~~iv~~a~~~~~~~v~~~GgGts~~g~~~~ 104 (524)
T 2exr_A 28 DGVSESLN--I-QGEILCGGAAADIAGRDFGGMNCVKPLAVVRPVGPEDIAGAVKAALRSDKLTVAARGNGHSINGQAMA 104 (524)
T ss_dssp ------CC--C-SSEEECSHHHHHHHTCCTTCCCCCCCSEEEECSSHHHHHHHHHHHHHSSSCCEEEESSSCCSSSTTCC
T ss_pred HHHHHhcC--C-CCeEEeCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhhcCceEEEECCCcCCCCcccC
Confidence 35566676 4 67899999999999999988889999999999999999999999996 99999999999999998887
Q ss_pred cCCeEEEEcCCCCCeEEEeC-----CC--CEEEEEccccHHHH-HHHHHhCCCCcccCCCCCCcceeccccccCCCCCCc
Q 014546 159 VFDEVIINMGSMNNIITFDK-----GS--GVLVCEAGCILENL-VSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL 230 (423)
Q Consensus 159 ~~~gvvIdls~mn~I~~id~-----~~--~~v~VeaGv~~~~L-~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~ 230 (423)
. ++|+|||++||+| ++|+ ++ .+++||||+++.++ +++++++|+. |++|++...+||||++++|++|.++
T Consensus 105 ~-~gvvidl~~m~~i-~i~~~~~~~~~~~~~v~v~aGv~~~~l~~~~l~~~Gl~-~~~~~s~~~~tiGG~va~ng~G~~~ 181 (524)
T 2exr_A 105 E-GGLVVDMSTTAEN-HFEVGYLSGGDATAFVDVSGGALWEDVLKRCVSEYGLA-PRSWTDYLGLTVGGTLSNAGVSGQA 181 (524)
T ss_dssp T-TSEEEEGGGGTTS-CEEEEECCSSSSSEEEEEETTCBHHHHHHHHHHHHSEE-CSCCCSCCSSBHHHHHTTCCCCTTH
T ss_pred C-CEEEEECcCCCCc-EEeecccCCCCCceEEEEeCCcCHHHHHHHHHHHcCCC-CCCCCcCCceeecccCCCCCCcccc
Confidence 4 7899999999999 8887 55 79999999999997 5556699998 7788877889999999999999999
Q ss_pred cccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHH
Q 014546 231 VRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ 310 (423)
Q Consensus 231 ~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~ 310 (423)
.+||.++|+|++++||++||++++++.. .++||+++++||+|+|||||+++||++|.|+......+.|++++++.
T Consensus 182 ~~yG~~~d~V~~l~vV~~dG~v~~~~~~-----~~~dL~~~~~Gs~GtlGiIt~~tl~l~p~p~~~~~~~~~f~~~~~~~ 256 (524)
T 2exr_A 182 FRYGPQTSNVTELDVVTGNGDVVTCSEI-----ENSELFFSVLGGLGQFGIITRARVLLQPAPDMVRWIRVVYTEFDEFT 256 (524)
T ss_dssp HHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTSSEEEEEEEEEEEECCSEEEEEEEEESCHHHHH
T ss_pred cccCcHhhhEEEEEEEecCCeEEEECCC-----CChhHHhHhhcCCCccEEEEEEEEEEEEcCCeeEEEEEEeCCHHHHH
Confidence 9999999999999999999999998753 57899999999999999999999999999998888888999999999
Q ss_pred HHHHHHHHHcCCCceEEEeeCHHHHHHHHhh---ccC--C-------CCCCCCCccceEEEEEe-----cCCChHHHHHH
Q 014546 311 KLLREAKRKLGEILSAFEFLDNQSMDLVLTY---LEG--V-------RNPFSSSMHNFYVLIET-----TGSEESYDREK 373 (423)
Q Consensus 311 ~~~~~~~~~~~~~~~a~E~~d~~~~~~~~~~---~~~--~-------~~~~~~~~~~~~llie~-----~g~~~~~~~~~ 373 (423)
+++..+.+. +.. +++|+||...+...+.. ... . ...++.....+++++|+ +|.++++++++
T Consensus 257 ~~~~~l~~~-~~~-~~~e~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~llve~~~~~~~g~~~~~v~~~ 334 (524)
T 2exr_A 257 QDAEWLVSQ-KNE-SSFDYVEGFVFVNGADPVNGWPTVPLHPDHEFDPTRLPQSCGSVLYCLELGLHYRDSDSNSTIDKR 334 (524)
T ss_dssp HHHHHHHTS-CTT-SSCSEEEEEEEESSCCTTTSGGGSCSSTTSCCCGGGSCTTCCSEEEEEEEEEEECTTSCHHHHHHH
T ss_pred HHHHHHHHc-CCc-chhHhhchhhhhcchhhhhhhhhcccccccccchhcCCcccccEEEEEEEEeecCCCCCHHHHHHH
Confidence 999988643 333 57888887544322110 000 0 01222111358899999 89888888888
Q ss_pred HHHHHHHHhhCCCcceeE-------EeCCHHHHHHHHHHHhhhhHHH
Q 014546 374 LEAFLLSSMEGGLISDGV-------IAQDINQASSFWRIRELITGYS 413 (423)
Q Consensus 374 l~~~~~~~~~~~~~~~~~-------~a~d~~~~~~lW~~R~~~~~a~ 413 (423)
++.+++.+.+.+.. ... ++.+..+. .|+.|+...+++
T Consensus 335 ~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~--~W~~R~~~~~a~ 378 (524)
T 2exr_A 335 VERLIGRLRFNEGL-RFEVDLPYVDFLLRVKRS--EEIAKENGTWET 378 (524)
T ss_dssp HHHHHTTCCCCTTC-EEEEEEEHHHHHTTTHHH--HHHHHHTTCSSS
T ss_pred HHHHHHHHHhCCCe-EeecccchhhhhhhhhhH--HHHhhhhccccc
Confidence 88777655444432 222 34444433 399999887654
No 8
>1w1o_A Cytokinin dehydrogenase 1; flavin, oxidoreductase, flavoprotein, FAD; HET: NAG FAD; 1.7A {Zea mays} SCOP: d.58.32.4 d.145.1.1 PDB: 1w1q_A* 1w1r_A* 1w1s_A* 3dq0_A* 2qkn_A* 3c0p_A* 3bw7_A* 2qpm_A* 3kjm_A*
Probab=100.00 E-value=1.2e-44 Score=383.17 Aligned_cols=321 Identities=14% Similarity=0.145 Sum_probs=250.8
Q ss_pred CHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHh--C-CCeEEEeCCCccCCCC
Q 014546 79 NSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNS--R-LLAVVPQGGNTGLVGG 155 (423)
Q Consensus 79 ~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~--~-~ipv~~~GgGt~l~g~ 155 (423)
+..++++|+++..+..|.+++..+..|++||+..+.+.|.+|++|+|++||+++|++|++ + ++|++|+|||||+.|+
T Consensus 31 ~~~~~~~l~~~~~~~~v~~~~~~~~~~~~d~~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~~~~v~~~G~G~~~~g~ 110 (534)
T 1w1o_A 31 GRPWPASLAALALDGKLRTDSNATAAASTDFGNITSALPAAVLYPSSTGDLVALLSAANSTPGWPYTIAFRGRGHSLMGQ 110 (534)
T ss_dssp ---------CTTTTTCEECSHHHHHHTSCCTTCSCCCCCSEEECCSSHHHHHHHHHHHHHCTTCCCCEEEESSCCCSSST
T ss_pred hHHHHHHHHhcCCCceEecCHHHHHHHhccccccccCCCCEEEecCCHHHHHHHHHHHHhcCCCCceEEEECCCCCCCCC
Confidence 346678899966678899999999999999988889999999999999999999999997 6 9999999999999998
Q ss_pred ccccCCeEEEEcCCCCCe-----EEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCc
Q 014546 156 SVPVFDEVIINMGSMNNI-----ITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRL 230 (423)
Q Consensus 156 ~~~~~~gvvIdls~mn~I-----~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~ 230 (423)
+.+ .++++|||++||+| +++|+++.+++||||+++.+|++++.++|+. ++++++...+||||++++|++|..+
T Consensus 111 ~~~-~~gvvi~l~~m~~i~~~~~~~~d~~~~~v~v~aGv~~~~l~~~~~~~Gl~-~~~~~~~~~~tvGG~v~~~g~g~~~ 188 (534)
T 1w1o_A 111 AFA-PGGVVVNMASLGDAAAPPRINVSADGRYVDAGGEQVWIDVLRASLARGVA-PRSWTDYLYLTVGGTLSNAGISGQA 188 (534)
T ss_dssp TCC-TTSEEEEGGGGGCSSSSCSEEECTTSSEEEEETTCBHHHHHHHHHTTTEE-ESCCCSSCCSBHHHHHTTCCCSTTH
T ss_pred cCC-CCeEEEECccccccccCccEEEcCCCCEEEECCCcCHHHHHHHHHHCCCc-ccCCCCCCCEEeceeccCCCccccc
Confidence 876 47999999999998 7999989999999999999999999999995 6677777789999999999999999
Q ss_pred cccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHH
Q 014546 231 VRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ 310 (423)
Q Consensus 231 ~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~ 310 (423)
.+||.++|+|+++|||++||++++++.. .++||+|+++||+|+|||||+++||++|.|+....+.+.|++++++.
T Consensus 189 ~~yG~~~d~v~~~evV~~dG~v~~~~~~-----~~~dL~~~~rGs~G~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~ 263 (534)
T 1w1o_A 189 FRHGPQISNVLEMDVITGHGEMVTCSKQ-----LNADLFDAVLGGLGQFGVITRARIAVEPAPARARWVRFVYTDFAAFS 263 (534)
T ss_dssp HHHCCGGGSEEEEEEEETTSCEEEEESS-----SSHHHHHHHTTCTTCSEEEEEEEEEEEECCSEEEEEEEEESCHHHHH
T ss_pred cccccHhhhEEEEEEEeCCccEEEECCC-----CChhhHhhhcCCCCCcEEEEEEEEEEEECCcceEEEEEEeCCHHHHH
Confidence 9999999999999999999999998754 67899999999999999999999999999998888888899999988
Q ss_pred HHHHHHHHHcCC-----CceEEEeeCHHHHHH---HHhhccCC-CC---------CCCCC-ccceEEEEEec----CCCh
Q 014546 311 KLLREAKRKLGE-----ILSAFEFLDNQSMDL---VLTYLEGV-RN---------PFSSS-MHNFYVLIETT----GSEE 367 (423)
Q Consensus 311 ~~~~~~~~~~~~-----~~~a~E~~d~~~~~~---~~~~~~~~-~~---------~~~~~-~~~~~llie~~----g~~~ 367 (423)
+++..+.+. +. .++++|+||...+.. +..+ +.. .. +++.. ..++++++|+. |.++
T Consensus 264 ~~~~~~~~~-~~~~~~~~~~~~e~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~ie~~~~~~g~~~ 341 (534)
T 1w1o_A 264 ADQERLTAP-RPGGGGASFGPMSYVEGSVFVNQSLATDL-ANTGFFTDADVARIVALAGERNATTVYSIEATLNYDNATA 341 (534)
T ss_dssp HHHHHHHCB-C------CBCSCSEEEEEEEEGGGHHHHH-HTTSSSCHHHHHHHHHHHHHTTCSEEEEEEEEEEC-----
T ss_pred HHHHHHHhc-ccccccccccchhHhhhhhhccccccccc-ccccccCccccccccccccccccceEEEEEEEEecCCCcc
Confidence 888777543 44 578899999866542 3322 122 11 11110 03478899987 7554
Q ss_pred --HHHHHHHHHHHHHHhhCCCcceeE-------EeCCHHHHHHHHHHHhhhhH
Q 014546 368 --SYDREKLEAFLLSSMEGGLISDGV-------IAQDINQASSFWRIRELITG 411 (423)
Q Consensus 368 --~~~~~~l~~~~~~~~~~~~~~~~~-------~a~d~~~~~~lW~~R~~~~~ 411 (423)
+++++.++.+++.+.+.+. .+.. ++++. ...+|.+|+...+
T Consensus 342 ~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~y~~~~~~~--~~~~w~~r~~~~~ 391 (534)
T 1w1o_A 342 AAAAVDQELASVLGTLSYVEG-FAFQRDVAYAAFLDRV--HGEEVALNKLGLW 391 (534)
T ss_dssp --CHHHHHHHHHHTTCCCCTT-CEEEEEEEHHHHHTHH--HHHHHHHHHTTCS
T ss_pred chhhhHHHHHHHHHhhcccCC-cceeccchHHHHhhhh--hhhHHHHhhcccc
Confidence 5556666777665544332 1111 12222 2367999986543
No 9
>3tsh_A Pollen allergen PHL P 4; flavoprotein, BI-covalent flavinylation, oxidoreductase, Glu dehydrogenase, N-glycosylation, allergy, dehydrogenase; HET: FDA; 1.90A {Phleum pratense} PDB: 3tsj_A*
Probab=100.00 E-value=7.9e-37 Score=320.86 Aligned_cols=231 Identities=16% Similarity=0.202 Sum_probs=194.9
Q ss_pred HHHHHHHHHhhCCCcEecChh-----HHHHhhc--ccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccC
Q 014546 80 SEDVSYFKELLGEKSVIQDED-----VLLAANE--DWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGL 152 (423)
Q Consensus 80 ~~~l~~L~~ilg~~~v~~~~~-----~l~~y~~--d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l 152 (423)
+++++.|.+.+++..|++..+ .+..|.+ .|+.....+|.+||+|+|++||+++|++|+++++||++|||||++
T Consensus 9 ~~f~~~L~~~~~~~~v~~~~~~~y~~~~~~~~~n~rw~~~~~~~P~~vv~p~~~~~v~~~v~~a~~~~~~~~~r~gGh~~ 88 (500)
T 3tsh_A 9 EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDY 88 (500)
T ss_dssp CHHHHHHHHHSCGGGEEETTSTTHHHHHHTTCCCTTTTSTTSCCCSEEECCSSHHHHHHHHHHHHHTTCEEEEESSCCCT
T ss_pred HHHHHHHHhhCCCCEEECCCCCccHHHHHhhhccccccCCCCCCceEEEEcCCHHHHHHHHHHHHHCCCcEEEEcCCcCC
Confidence 467889999999888876532 2333333 377777788999999999999999999999999999999999998
Q ss_pred CCCc---cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCC
Q 014546 153 VGGS---VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR 229 (423)
Q Consensus 153 ~g~~---~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~ 229 (423)
.|.+ .+.+++++|||++||+| ++|+++++++||||+++.||+++|.++|+.+++.+|+..++++||+++++++|..
T Consensus 89 ~g~s~~~~~~~~~~~idl~~~~~v-~~d~~~~~~~v~~G~~~~~~~~~l~~~g~~~~~~~g~~~~vgvgG~~~~gg~g~~ 167 (500)
T 3tsh_A 89 EGLSYRSLQPETFAVVDLNKMRAV-WVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGML 167 (500)
T ss_dssp TCTTTCCSSSCCEEEEECTTCCCE-EEETTTTEEEEETTSBHHHHHHHHHHHCTTEECCCCSSTTSBHHHHHHTCCCCTT
T ss_pred CCCcCCCCCcCCeEEEECcCCCCE-EECCCCCEEEEccCcCHHHHHHHHHHhCCCcccCCCCCCCceecCccccccCCcc
Confidence 7643 34567999999999998 9999999999999999999999999999988877888899999999999999999
Q ss_pred ccccccccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccc-cCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHH
Q 014546 230 LVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFI-GSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFS 308 (423)
Q Consensus 230 ~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~-Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~ 308 (423)
+.+||..+|+|+++|||++||+++... ..+.||+|+++ |++|+|||||+++||++|.|+....+...+...+.
T Consensus 168 ~~~~G~~~d~v~~~~vV~a~G~i~~~~------~~~~dl~~a~~gg~gg~fGvvt~~~~~~~p~p~~~~~~~~~~~~~~~ 241 (500)
T 3tsh_A 168 LRKYGIAAENVIDVKLVDANGKLHDKK------SMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEG 241 (500)
T ss_dssp HHHHCCGGGGEEEEEEECTTSCEECHH------HHCHHHHHHHTTSCSSTTCEEEEEEEECEECCSCEEEEEEEEETTTT
T ss_pred ccccCChhhheeeEEEECCCceEEECC------CCChHHHHHHHhhcccceEEEEEEEEEEEeCCCeEEEEEEecCcHHH
Confidence 999999999999999999999988643 24569999999 45679999999999999999976655555544445
Q ss_pred HHHHHHHHH
Q 014546 309 CQKLLREAK 317 (423)
Q Consensus 309 ~~~~~~~~~ 317 (423)
+.+++..++
T Consensus 242 ~~~~~~~~~ 250 (500)
T 3tsh_A 242 AVDIINKWQ 250 (500)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555554
No 10
>3rja_A Carbohydrate oxidase; protein-substrate analogue complex, FAD binding domain, BERB berberine-like domain, glucooligosaccharide oxidase; HET: FAD NAG ABL TRS; 2.10A {Microdochium nivale} PDB: 3rj8_A*
Probab=100.00 E-value=7.6e-35 Score=303.81 Aligned_cols=217 Identities=18% Similarity=0.217 Sum_probs=185.3
Q ss_pred CcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc-ccCCeEEEEcCCCC
Q 014546 93 KSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMN 171 (423)
Q Consensus 93 ~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~-~~~~gvvIdls~mn 171 (423)
..+..++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++|||||+.|... +..++++|||++||
T Consensus 13 ~v~~p~~~~y~~~~~~~n~~~~~~p~~vv~P~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~~~vvIdl~~~~ 92 (473)
T 3rja_A 13 PIDIPGTADYERDVEPFNIRLPYIPTAIAQTQTTAHIQSAVQCAKKLNLKVSAKSGGHSYASFGFGGENGHLMVQLDRMI 92 (473)
T ss_dssp CBCCTTSHHHHHHTCCSBTTSCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCTTCGGGTSSSSCEEEECTTCC
T ss_pred cEECCCCCchHHHHHHhhcccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEcCCCCCCCCcccCCCCeEEEECCCCC
Confidence 34445555666677788888999999999999999999999999999999999999999986443 34578999999999
Q ss_pred CeEEEeCCCCEEEEEccccHHHHHHHHHhCC-CCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCC
Q 014546 172 NIITFDKGSGVLVCEAGCILENLVSFLDDHG-FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANG 250 (423)
Q Consensus 172 ~I~~id~~~~~v~VeaGv~~~~L~~~l~~~G-l~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG 250 (423)
+|.++|+++.+++||||+++.+|.++|.++| +.+|. |+...++|||.+++|++|..+.+||.++|+|++++||++||
T Consensus 93 ~i~~vd~~~~~v~v~aG~~~~~l~~~l~~~G~~~~p~--G~~~~vgvgG~~~ggg~G~~~~~~G~~~D~v~~~~vV~a~G 170 (473)
T 3rja_A 93 DVISYNDKTGIAHVEPGARLGHLATVLNDKYGRAISH--GTCPGVGISGHFAHGGFGFSSHMHGLAVDSVVGVTVVLADG 170 (473)
T ss_dssp CEEEEETTTTEEEECTTCBHHHHHHHHHHHHSEECCC--CSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTS
T ss_pred ceEEEcCCCCEEEECCCCCHHHHHHHHHHcCCEEecc--CCCCCcEeeeeccCCCCCcccccccchHhheeeEEEEecCC
Confidence 9977999999999999999999999999999 76763 66777899999999999999999999999999999999999
Q ss_pred cEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEc--CCHHHHHHHHHHH
Q 014546 251 DVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLAC--KDYFSCQKLLREA 316 (423)
Q Consensus 251 ~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~--~~~~~~~~~~~~~ 316 (423)
++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.+ ++.+++.+++..+
T Consensus 171 ~v~~~~~~-----~~~dLf~a~rG~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (473)
T 3rja_A 171 RIVEASAT-----ENADLFWGIKGAGSNFGIVAVWKLATFPAPKVLTRFGVTLNWKNKTSALKGIEAV 233 (473)
T ss_dssp CEEEEETT-----BSHHHHHHHHHHGGGTCEEEEEEEECEECCSCEEEEEEECCCCSHHHHHHHHHHH
T ss_pred eEEEeCCC-----CCcchhhcccCCCCceEEEEEEEEEEEeCCCceEEEEEEecCccHHHHHHHHHHH
Confidence 99998754 5789999999999999999999999999998665554443 3233444444444
No 11
>1hsk_A UDP-N-acetylenolpyruvoylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP, flavoprotein, FAD; HET: FAD; 2.30A {Staphylococcus aureus} SCOP: d.145.1.2 d.146.1.1
Probab=100.00 E-value=2.6e-37 Score=308.11 Aligned_cols=267 Identities=15% Similarity=0.220 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc
Q 014546 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (423)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~ 157 (423)
++.+++++|++++|+.+|.+ +.++..|++ ..+.+.|.+|++|+|++||++++++|+++++|++++|||||+.+++.
T Consensus 14 ~~~~~~~~l~~~l~~~~v~~-~~~l~~~~t---~~~~~~p~~vv~P~s~eev~~~l~~a~~~~~pv~~~GgGtnl~~~~~ 89 (326)
T 1hsk_A 14 INKDIYQALQQLIPNEKIKV-DEPLKRYTY---TKTGGNADFYITPTKNEEVQAVVKYAYQNEIPVTYLGNGSNIIIREG 89 (326)
T ss_dssp -CHHHHHHHHHHSCGGGEEE-EEEGGGTCT---TSCCCEEEEEECCSSHHHHHHHHHHHHHTTCCEEEESSCSSEEECTT
T ss_pred chHHHHHHHHHhcCccceec-CcchHHhcc---CCcCCcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCCCccccCCC
Confidence 56688999999999888888 667888874 35788899999999999999999999999999999999999988776
Q ss_pred ccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCC----CcccCCCCCCcceeccccccCCCCCCcccc
Q 014546 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRY 233 (423)
Q Consensus 158 ~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl----~~~~~pgs~~~~tIGG~va~nagG~~~~~y 233 (423)
+. ++++|||++||+| ++|. .+++||||++|.+|++++.++|+ .++.+|+ ||||++++|+|| |
T Consensus 90 ~~-~gvvI~l~~m~~i-~id~--~~v~v~aGv~~~~l~~~l~~~Gl~gLe~~~~~Pg-----tvGG~i~~nagg-----y 155 (326)
T 1hsk_A 90 GI-RGIVISLLSLDHI-EVSD--DAIIAGSGAAIIDVSRVARDYALTGLEFACGIPG-----SIGGAVYMNAGA-----Y 155 (326)
T ss_dssp CE-EEEEEECTTCCCE-EEET--TEEEEETTSBHHHHHHHHHHTTEESCGGGTTCCS-----BHHHHHHHTCEE-----T
T ss_pred CC-CeEEEEeCCCCce-EEcC--CEEEEeCCCcHHHHHHHHHHCCCccccccCCCcc-----hhhHHHhccccc-----C
Confidence 54 6899999999999 8984 68999999999999999999999 6776665 599999999998 9
Q ss_pred c-cccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccC-CceeeEEEEEcCCHHHHHH
Q 014546 234 G-SLHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQK 311 (423)
Q Consensus 234 G-~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~~~~ 311 (423)
| .++|+|+++++|++||++++++.. +...||++..++ ++| ||||+++||++|. |+.. ..+..
T Consensus 156 G~~~~d~v~~v~vv~~~G~i~~~~~~--~~~~gyr~~~l~--s~g--gIIt~~~l~l~p~~p~~~----------~~~~~ 219 (326)
T 1hsk_A 156 GGEVKDCIDYALCVNEQGSLIKLTTK--ELELDYRNSIIQ--KEH--LVVLEAAFTLAPGKMTEI----------QAKMD 219 (326)
T ss_dssp TEEHHHHEEEEEEECTTSCEEEEETT--TTTCBTTBCHHH--HTT--CEEEEEEEECEECCHHHH----------HHHHH
T ss_pred chhhhhhEEEEEEEeCCCCEEEEChH--HcCCCccccccC--CCC--EEEEEEEEEEEcCCHHHH----------HHHHH
Confidence 9 899999999999999999998765 566788876554 566 9999999999998 5432 23344
Q ss_pred HHHHHHHHcC--------------CCceEEEeeCHHHHHHHHhhccCCCCCCCCCccceEEEEEecCCChHHHHHHHHHH
Q 014546 312 LLREAKRKLG--------------EILSAFEFLDNQSMDLVLTYLEGVRNPFSSSMHNFYVLIETTGSEESYDREKLEAF 377 (423)
Q Consensus 312 ~~~~~~~~~~--------------~~~~a~E~~d~~~~~~~~~~~~~~~~~~~~~~~~~~llie~~g~~~~~~~~~l~~~ 377 (423)
.+..+++... ..+.|+|+||+..++.+.. .+. .+++ ..+++|||+.|.+.+++.+.++.+
T Consensus 220 ~~~~~~~a~~p~~~~s~gs~fk~p~~~~a~elid~~glkg~~~--g~a--~v~~--~~a~~lvn~~ga~~~~v~~~~~~v 293 (326)
T 1hsk_A 220 DLTERRESKQPLEYPSCGSVFQRPPGHFAGKLIQDSNLQGHRI--GGV--EVST--KHAGFMVNVDNGTATDYENLIHYV 293 (326)
T ss_dssp HHHHHHHHHSCTTSCEECCCBCCCTTSCHHHHHHHTTCTTCEE--TTE--EECS--SCTTCEEECSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCCcEEEeeeCCCcchHHHHHHHhccCCEEe--CCe--eecc--cccEEEEECCCCCHHHHHHHHHHH
Confidence 4444443221 1234455555433322210 010 1222 346799999997776666666666
Q ss_pred HHHHhhC
Q 014546 378 LLSSMEG 384 (423)
Q Consensus 378 ~~~~~~~ 384 (423)
.+.+.+.
T Consensus 294 ~~~v~~~ 300 (326)
T 1hsk_A 294 QKTVKEK 300 (326)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666553
No 12
>2bvf_A 6-hydroxy-D-nicotine oxidase; autoflavinylation, enantiomeric substrates, flavoenzymes, NI degradation; HET: FAD; 1.92A {Arthrobacter nicotinovorans} PDB: 2bvg_A* 2bvh_A*
Probab=100.00 E-value=1.4e-34 Score=300.88 Aligned_cols=211 Identities=19% Similarity=0.223 Sum_probs=182.7
Q ss_pred hhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeC
Q 014546 99 EDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (423)
Q Consensus 99 ~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~ 178 (423)
+..+......|+..+.+.|.+|+.|+|++||+++|++|+++++|+.++||||++.+.+. ..++++|||++||+| ++|+
T Consensus 21 ~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~-~~~gvvi~l~~l~~i-~~d~ 98 (459)
T 2bvf_A 21 DSGFDAIANIWDGRHLQRPSLIARCLSAGDVAKSVRYACDNGLEISVRSGGHNPNGYAT-NDGGIVLDLRLMNSI-HIDT 98 (459)
T ss_dssp STTHHHHHCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTC-CSSSEEEECTTCCCE-EEET
T ss_pred CccHHHHHHHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEEcCCcCCCCccc-cCCeEEEECCCCCCE-EECC
Confidence 33445456678888889999999999999999999999999999999999999988764 367999999999999 8999
Q ss_pred CCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCC
Q 014546 179 GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGT 258 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~ 258 (423)
++.+++||||++|.+|.++|.++|+.+|. |....++|||++.++++|+.+.+||.++|+|+++|||++||++++++..
T Consensus 99 ~~~~v~v~aG~~~~~l~~~l~~~Gl~~~~--g~~~~~gi~G~~~gGg~g~~~~~~G~~~d~v~~~~vV~~~G~i~~~~~~ 176 (459)
T 2bvf_A 99 AGSRARIGGGVISGDLVKEAAKFGLAAVT--GMHPKVGFCGLALNGGVGFLTPKYGLASDNILGATLVTATGDVIYCSDD 176 (459)
T ss_dssp TTTEEEEETTCBHHHHHHHHHTTTEEECC--CSCTTSBHHHHHTTCCCCTTHHHHCCGGGGEEEEEEECTTSCEEEEESS
T ss_pred CCCEEEECCCCCHHHHHHHHHHcCCEecC--CCCCCcccceeecCCCCccccccccCHhHhEEEEEEEcCCCeEEEeCCC
Confidence 99999999999999999999999999885 5556788999999999999999999999999999999999999998754
Q ss_pred cccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCC--HH--HHHHHHHHHHH
Q 014546 259 LRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKD--YF--SCQKLLREAKR 318 (423)
Q Consensus 259 ~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~--~~--~~~~~~~~~~~ 318 (423)
.++||+|+++|++|+|||||+++||++|.|.......+.|+. .+ ++.+++.++..
T Consensus 177 -----~~~dLf~a~rg~~g~~GiVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (459)
T 2bvf_A 177 -----ERPELFWAVRGAGPNFGVVTEVEVQLYELPRKMLAGFITWAPSVSELAGLLTSLLDALN 235 (459)
T ss_dssp -----SSHHHHHHHHHHGGGTCEEEEEEEEEEECCCCEEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred -----CChhhHhHhhccCCccEEEEEEEEEEEECCCcEEEEEEEechHHhhHHHHHHHHHHHHH
Confidence 467999999999999999999999999997655555545543 44 55555555543
No 13
>2vfr_A Xylitol oxidase, alditol oxidase; FAD, sugar, polyol, flavin, flavoprotein, oxidoreductase; HET: FAD; 1.1A {Streptomyces coelicolor} PDB: 2vfs_A* 2vft_A* 2vfu_A* 2vfv_A*
Probab=100.00 E-value=9.7e-35 Score=298.89 Aligned_cols=212 Identities=17% Similarity=0.260 Sum_probs=187.5
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCEEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGVLVCE 186 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~v~Ve 186 (423)
++|+..+...|.+|++|+|++||+++|++| +|+.++||||++.+.+.+..++++|||++||+|+++|+++.+++||
T Consensus 11 ~~w~~~~~~~p~~v~~P~s~~ev~~~v~~a----~~v~~~G~G~s~~~~~~~~~~g~vi~l~~l~~i~~~d~~~~~v~v~ 86 (422)
T 2vfr_A 11 TNWAGNITYTAKELLRPHSLDALRALVADS----ARVRVLGSGHSFNEIAEPGDGGVLLSLAGLPSVVDVDTAARTVRVG 86 (422)
T ss_dssp BCSSSSCBCSCSSCBCCSSHHHHHHHHHHC----SSEEECSSCCCCSSTTCCCTTCEEECSTTSCCCEEEETTTTEEEEE
T ss_pred ecCCCCccCCCCEEEeCCCHHHHHHHHHhC----CCEEEEECCCCCCCCccCCCCcEEEEhhhCCCcEEEcCCCCEEEEc
Confidence 578888999999999999999999999999 8999999999999887765679999999999999999999999999
Q ss_pred ccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCCC
Q 014546 187 AGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTGY 266 (423)
Q Consensus 187 aGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G~ 266 (423)
||+++.+|+++|.++|+.+| ++++.+.+||||++++|++|.+ .+||.++|+|+++++|++||++++++.. ++
T Consensus 87 aG~~l~~l~~~l~~~Gl~l~-~~~~~~~~tvGG~i~~~~~G~~-~~~G~~~d~v~~~~vv~~~G~~~~~~~~---~~--- 158 (422)
T 2vfr_A 87 GGVRYAELARVVHARGLALP-NMASLPHISVAGSVATGTHGSG-VGNGSLASVVREVELVTADGSTVVIARG---DE--- 158 (422)
T ss_dssp TTCBHHHHHHHHHHTTEECS-CCCSSSCSBHHHHHHHTCCCCC-TTCCCGGGGEEEEEEECTTSCEEEEETT---ST---
T ss_pred CCCCHHHHHHHHHHcCCccc-CCCCCCCeeHHHHHhcCCCCCC-cccCcHHHheEEEEEEeCCCCEEEeCCC---CC---
Confidence 99999999999999999987 6666777899999999999986 6999999999999999999999998754 11
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHH-HHHHHHHHHcCCCceEEEeeCHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQ-KLLREAKRKLGEILSAFEFLDNQSMDL 337 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~a~E~~d~~~~~~ 337 (423)
. +++++|++|++||||+++||+.|.|+.....+. +.+++++. +++.++. ..+.++|+++ ..++.
T Consensus 159 ~-f~~~~g~~G~lGvit~~~l~l~p~~~~~~~~~~-~~~~~~~~~~~~~~~~----~~~~~~e~~~-~~~~~ 223 (422)
T 2vfr_A 159 R-FGGAVTSLGALGVVTSLTLDLEPAYEMEQHVFT-ELPLAGLDPATFETVM----AAAYSVSLFT-DWRAP 223 (422)
T ss_dssp T-GGGTSSCTTTTCEEEEEEEECEECCEEEEEEEE-EECSTTCCHHHHHHHH----TSSSEEEEEE-CSSSS
T ss_pred C-cceEEecCCCCEEEEEEEEEEEecCceEEEEEe-cCCHHHHHHHHHHHHH----hcCCcEEEEe-cCCCc
Confidence 2 699999999999999999999999997766554 66788888 8887764 3467899988 66544
No 14
>3fw9_A Reticuline oxidase; BI-covalent flavinylation, N-glycosylation, alakloid biosynt oxidoreductase, alkaloid metabolism; HET: FAD SLX NAG MAN; 1.49A {Eschscholzia californica} PDB: 3d2h_A* 3d2d_A* 3d2j_A* 3gsy_A* 4ec3_A* 3fw8_A* 3fw7_A* 3fwa_A*
Probab=100.00 E-value=1.2e-34 Score=303.50 Aligned_cols=203 Identities=19% Similarity=0.239 Sum_probs=178.6
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcccc-CCeEEEEcCCCCCeEEEeCCCCEEE
Q 014546 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPV-FDEVIINMGSMNNIITFDKGSGVLV 184 (423)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~-~~gvvIdls~mn~I~~id~~~~~v~ 184 (423)
+..|.......|.+|++|+|++||+++|++|+++++|++++||||++.|.+.+. .++++|||++||+| ++|+++.+++
T Consensus 35 n~r~~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrGgGh~~~g~~~~~~~ggvvIdl~~m~~i-~vd~~~~~v~ 113 (495)
T 3fw9_A 35 NPLFQNSLISKPSAIILPGSKEELSNTIRCIRKGSWTIRLRSGGHSYEGLSYTSDTPFILIDLMNLNRV-SIDLESETAW 113 (495)
T ss_dssp CGGGCSTTSCCCSEEECCCSHHHHHHHHHHHHTSSCEEEEESSCCCTTCTTSCCSSCEEEEECTTCCCE-EEETTTTEEE
T ss_pred hcccccccCCCCCEEEecCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCccccCCCCeEEEECCCCCcE-EEeCCCCEEE
Confidence 356776777899999999999999999999999999999999999998887653 46899999999999 9999999999
Q ss_pred EEccccHHHHHHHHHhC--CCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccC
Q 014546 185 CEAGCILENLVSFLDDH--GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (423)
Q Consensus 185 VeaGv~~~~L~~~l~~~--Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~ 262 (423)
||||+++.+|.++|.++ |+.+| +|+.++++|||+++++++|..+.+||.++|+|++++||++||++++. +
T Consensus 114 V~aG~~l~~l~~~l~~~g~gl~~~--~G~~~~vgigG~~~gGg~G~~~~~~G~~~D~v~~~~vV~adG~i~~~------~ 185 (495)
T 3fw9_A 114 VESGSTLGELYYAITESSSKLGFT--AGWCPTVGTGGHISGGGFGMMSRKYGLAADNVVDAILIDANGAILDR------Q 185 (495)
T ss_dssp EETTCBHHHHHHHHHHHCSSEECC--CCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECH------H
T ss_pred EcCCCCHHHHHHHHHHhcCCceec--cCCCCCCeEeeeccCCCCcccccCCCchhheEEEEEEEcCCCCEEEc------C
Confidence 99999999999999999 66676 57888899999999999999999999999999999999999999961 2
Q ss_pred CCCCCccccccc-CCCCeeEEEEEEEEcccCCceeeEEEEEcC-CHHHHHHHHHHHH
Q 014546 263 NTGYDLKHLFIG-SEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAK 317 (423)
Q Consensus 263 ~~G~dL~~l~~G-s~GtlGIIt~~tl~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~~ 317 (423)
..++||+|+++| ++|+|||||+++||++|.|+....+.+.++ +.+++.+++..++
T Consensus 186 ~~~~DLf~a~rGg~~g~~GIVt~~~l~l~p~p~~~~~~~~~~~~~~~~a~~~l~~~~ 242 (495)
T 3fw9_A 186 AMGEDVFWAIRGGGGGVWGAIYAWKIKLLPVPEKVTVFRVTKNVAIDEATSLLHKWQ 242 (495)
T ss_dssp HHCHHHHHHHTTSCTTSSCEEEEEEEECEECCSSEEEEEEEEEECHHHHHHHHHHHH
T ss_pred CCChhhhhhhhcccCCCcEEEEEEEEEEEeCCCeEEEEEEeecCcHHHHHHHHHHHH
Confidence 357899999998 789999999999999999997766655553 3466666666665
No 15
>4feh_A Oxidoreductase DPRE1; alpha+beta, decaprenylphosphoryl-beta-D-RIBO; HET: FAD; 2.04A {Mycobacterium tuberculosis} PDB: 4fdo_A* 4fdn_A* 4fdp_A* 4ff6_A* 4aut_A* 4f4q_A* 4g3t_A 4g3u_A
Probab=100.00 E-value=6.3e-34 Score=297.27 Aligned_cols=204 Identities=16% Similarity=0.242 Sum_probs=184.8
Q ss_pred hhcccccccCCCccEEEEcCCHHHHHHHHHHHHhC--CCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCCCE
Q 014546 105 ANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSR--LLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGSGV 182 (423)
Q Consensus 105 y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~--~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~~~ 182 (423)
+.++|. ++.+.|.+|+.|+|++||+++|++|+++ ++|+.++|+|||+.+.+.+ .+|++|||++||+|+++|+++++
T Consensus 32 ~~~~W~-~~~~~p~~vv~P~s~eev~~~v~~a~~~~~~~~v~~~G~G~s~~~~~~~-~~gvvIdl~~l~~i~~~d~~~~~ 109 (481)
T 4feh_A 32 RLTGWG-RTAPSVANVLRTPDAEMIVKAVARVAESGGGRGAIARGLGRSYGDNAQN-GGGLVIDMTPLNTIHSIDADTKL 109 (481)
T ss_dssp EECCTT-CCSCEEEEEEECSCHHHHHHHHHHHHTTTCTTCEEEECSSCSSSSTTCC-TTSEEEECTTCCCEEEEETTTTE
T ss_pred eeeccc-CCCCCCCEEEeCCCHHHHHHHHHHHHHcCCCceEEEEeCCcCCCCCCCC-cCeEEEECccCCCceEEcCCCCE
Confidence 456884 5789999999999999999999999999 7999999999999766553 67999999999999999999999
Q ss_pred EEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccC
Q 014546 183 LVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKD 262 (423)
Q Consensus 183 v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~ 262 (423)
|+||||+++.+|.++|.++|+.+|..|++. .+||||+|++|+||.++.+||.++|+|+++++|++||++++++..
T Consensus 110 v~v~aGv~l~~L~~~l~~~Gl~l~~~~g~~-~~tvGGaia~~a~G~~~~~~G~~~d~V~~~evV~~dG~v~~~s~~---- 184 (481)
T 4feh_A 110 VDIDAGVNLDQLMKAALPFGLWVPVLPGTR-QVTVGGAIACDIHGKNHHSAGSFGNHVRSMDLLTADGEIRHLTPT---- 184 (481)
T ss_dssp EEEETTCBHHHHHHHHGGGTEECSCCCSCS-CCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEECTTSCEEEECSS----
T ss_pred EEEcCCccHHHHHHHHHHcCCEEEEeCCcC-ccccCCccccccCCCCcccCCCccceEeEEEEEeCCCCEEEeCCC----
Confidence 999999999999999999999999888875 579999999999999989999999999999999999999998753
Q ss_pred CCCCCcccccccCCCCeeEEEEEEEEcccCCce-eeEEEEEcCCHHHHHHHHHH
Q 014546 263 NTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSS-VNLAFLACKDYFSCQKLLRE 315 (423)
Q Consensus 263 ~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~-~~~~~~~~~~~~~~~~~~~~ 315 (423)
..++||+++++|+.|++||||+++|++.|.|+. .......+.+++++.+.+++
T Consensus 185 ~~~~dLf~a~rgs~G~~GIIt~~tl~l~p~~~~~~~~~~~~~~~l~~~~~~~~~ 238 (481)
T 4feh_A 185 GEDAELFWATVGGNGLTGIIMRATIEMTPTSTAYFIADGDVTASLDETIALHSD 238 (481)
T ss_dssp STTHHHHHHHTTCTTTTCEEEEEEEECEECSCSEEEEEEEECSSHHHHHHHHSS
T ss_pred CCChHHHHHhhccCCCceEEEEEEEEEEeCCccEEEEEEEeCCCHHHHHHHHHH
Confidence 256799999999999999999999999999864 45557788999999888864
No 16
>3vte_A Tetrahydrocannabinolic acid synthase; BI-covalent flavinylation, oxidoreductase; HET: NAG FAD; 2.75A {Cannabis sativa}
Probab=100.00 E-value=7e-34 Score=298.87 Aligned_cols=206 Identities=17% Similarity=0.246 Sum_probs=178.7
Q ss_pred cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc-ccCCeEEEEcCCCCCeEEEeCCCCEEEE
Q 014546 107 EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV-PVFDEVIINMGSMNNIITFDKGSGVLVC 185 (423)
Q Consensus 107 ~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~-~~~~gvvIdls~mn~I~~id~~~~~v~V 185 (423)
..|+......|.+|++|+|++||+++|++|+++++|+.++||||++.|.+. +..++++|||++||+| ++|+++.+++|
T Consensus 44 ~rw~~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~~gvvIdl~~l~~i-~vd~~~~~v~V 122 (518)
T 3vte_A 44 LRFISDTTPKPLVIVTPSNNSHIQATILCSKKVGLQIRTRSGGHDAEGMSYISQVPFVVVDLRNMHSI-KIDVHSQTAWV 122 (518)
T ss_dssp GGGCSSSSCCCSEEECCCSHHHHHHHHHHHHHHTCEEEEESSCCCTTCTTTCCSSSEEEEECTTCCCE-EEETTTTEEEE
T ss_pred cccccccCCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCCCCeEEEECCCCcee-EEeCCCCEEEE
Confidence 357767778999999999999999999999999999999999999988765 3357999999999999 89999999999
Q ss_pred EccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEEccCCcccCCCC
Q 014546 186 EAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVIDMLGTLRKDNTG 265 (423)
Q Consensus 186 eaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~~~~~~~k~~~G 265 (423)
|||+++.+|.++|.++|+.+.+.+|+.++++|||+++++++|..+.+||.++|+|++++||++||++++.. ..+
T Consensus 123 ~aG~~l~~l~~~l~~~g~gl~~~~G~~~~vgvgG~~~gGg~G~~s~~~G~~~D~V~~~evV~adG~iv~~~------~~~ 196 (518)
T 3vte_A 123 EAGATLGEVYYWINEKNENLSFPGGYCPTVGVGGHFSGGGYGALMRNYGLAADNIIDAHLVNVDGKVLDRK------SMG 196 (518)
T ss_dssp ETTCBHHHHHHHHHHHCTTEECCCCSCTTCBHHHHHHTCCCCTTHHHHCCGGGGEEEEEEECTTCCEECHH------HHC
T ss_pred eCCccHHHHHHHHHHhCCCceecCCCCCCeeeeeeeCCCCCccccCCCCchhheEEEEEEEccCCeEEEee------ccc
Confidence 99999999999999986544434678888999999999999999999999999999999999999999631 246
Q ss_pred CCcccccccC-CCCeeEEEEEEEEcccCCceeeEEEEEcC-CHHHHHHHHHHHHHH
Q 014546 266 YDLKHLFIGS-EGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLREAKRK 319 (423)
Q Consensus 266 ~dL~~l~~Gs-~GtlGIIt~~tl~l~p~p~~~~~~~~~~~-~~~~~~~~~~~~~~~ 319 (423)
+||+|+++|+ +|+|||||+++||++|.|+....+.+.+. +.+++.+++..+++.
T Consensus 197 ~DLf~a~rGgg~g~fGIVt~~~l~l~p~p~~~~~~~~~~~~~~~~~~~~l~~~~~~ 252 (518)
T 3vte_A 197 EDLFWAIRGGGGENFGIIAAWKIKLVAVPSKSTIFSVKKNMEIHGLVKLFNKWQNI 252 (518)
T ss_dssp HHHHHHHTTSCGGGTCEEEEEEEECEECCSCEEEEEEEECCCHHHHHHHHHHHHHH
T ss_pred cchhhheecccCCCceEEEEEEEEEEeCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 7999999998 89999999999999999987655544443 456777777777643
No 17
>1zr6_A Glucooligosaccharide oxidase; alpha + beta, flavoenzyme, oxidoreductase; HET: NAG FAD; 1.55A {Acremonium strictum} PDB: 2axr_A* 3e0t_A* 3hsu_A*
Probab=100.00 E-value=6.6e-34 Score=298.87 Aligned_cols=224 Identities=15% Similarity=0.177 Sum_probs=183.5
Q ss_pred HHHHHHhhCCCc--Eec-ChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccc-
Q 014546 83 VSYFKELLGEKS--VIQ-DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP- 158 (423)
Q Consensus 83 l~~L~~ilg~~~--v~~-~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~- 158 (423)
+++|++.+++.. +.. ++..+......|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+
T Consensus 6 ~~~l~~~l~~~~~~~~~~~~~~y~~~~~~~~~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~~~~~~~ 85 (503)
T 1zr6_A 6 FNSINACLAAADVEFHEEDSEGWDMDGTAFNLRVDYDPAAIAIPRSTEDIAAAVQCGLDAGVQISAKGGGHSYGSYGFGG 85 (503)
T ss_dssp TCHHHHHHHHTTCEECCTTSHHHHHHTSCSBGGGCCCCSEEEECCSHHHHHHHHHHHHHHTCCEEEESSCCCTTCTTTTS
T ss_pred HHHHHHhhCcCCceecCCCccchHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccC
Confidence 456777776433 222 2233343456687788899999999999999999999999999999999999999886554
Q ss_pred cCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhC-CCCcccCCCCCCcceeccccccCCCCCCcccccccc
Q 014546 159 VFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDH-GFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLH 237 (423)
Q Consensus 159 ~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~-Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~ 237 (423)
..++++|||++||+| ++| ++++++||||+++.+|+++|.++ |+.+|. |....++|||.+.++++|+.+.+||.++
T Consensus 86 ~~~gvvIdl~~l~~i-~~d-~~~~v~v~aG~~~~~l~~~l~~~~gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~ 161 (503)
T 1zr6_A 86 EDGHLMLELDRMYRV-SVD-DNNVATIQGGARLGYTALELLDQGNRALSH--GTCPAVGVGGHVLGGGYGFATHTHGLTL 161 (503)
T ss_dssp SSSCEEEECTTCCCE-EEC-TTSCEEEETTCBHHHHHHHHHHTTSEECCC--CSCTTSBHHHHHHHCCCSTTHHHHCCGG
T ss_pred CCCcEEEECccCCCE-EEC-CCCeEEEecCCCHHHHHHHHHHcCCEEeCC--CCCCcCchhhhhcCCCCCcccccccChh
Confidence 457899999999999 999 88899999999999999999666 487773 5556778999999999999999999999
Q ss_pred ceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcC-CHHHHHHHHHH
Q 014546 238 GNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACK-DYFSCQKLLRE 315 (423)
Q Consensus 238 d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~-~~~~~~~~~~~ 315 (423)
|+|+++|||++||++++++.. .++||+|+++|++|+|||||+++||++|.|+....+.+.+. +.+++.+++..
T Consensus 162 D~v~~~~vV~a~G~i~~~~~~-----~~~dL~~a~rG~~g~~GIVt~~~l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (503)
T 1zr6_A 162 DWLIGATVVLADASIVHVSET-----ENADLFWALRGGGGGFAIVSEFEFNTFEAPEIITTYQVTTTWNRKQHVAGLKA 235 (503)
T ss_dssp GGEEEEEEECTTSCEEEEBTT-----BSHHHHHHHTTCCSSSCEEEEEEECCEECCSCEEEEEEEECCCHHHHHHHHHH
T ss_pred heEEEEEEEecCCCEEEeCCC-----CCccHHHHHhccCCCcEEEEEEEEEEEecCceeEEEEEEEeCCHHHHHHHHHH
Confidence 999999999999999998753 57899999999999999999999999999986544444432 23344444433
No 18
>2wdx_A Putative hexose oxidase; oxidoreductase-antibiotic complex, glycopeptide; HET: FAD GHP 3MY 3FG OMY BMA NAG N1L T55; 2.30A {Nonomuraea SP} PDB: 2wdw_A*
Probab=100.00 E-value=1.4e-33 Score=297.71 Aligned_cols=202 Identities=20% Similarity=0.270 Sum_probs=173.5
Q ss_pred hHHHHhh-cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeC
Q 014546 100 DVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK 178 (423)
Q Consensus 100 ~~l~~y~-~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~ 178 (423)
..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.+.+.+..++++|||++||+| ++|+
T Consensus 40 ~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~v~ggGh~~~g~~~~~~~gvvIdl~~m~~i-~~d~ 118 (523)
T 2wdx_A 40 PRYLNLKLRGANSRFNGEPDYIHLVGSTQQVADAVEETVRTGKRVAVRSGGHCFEDFVDNPDVKVIIDMSLLTEI-AYDP 118 (523)
T ss_dssp TTHHHHHTCSSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCSSSSSSSTTCCEEEECTTCCCE-EEET
T ss_pred cchHHHHhhhhhhcccCCCCEEEEeCCHHHHHHHHHHHHHcCCcEEEEcCCCCCCCCccCCCCeEEEEcccCCCE-EEcC
Confidence 3444444 6677778889999999999999999999999999999999999999987766567999999999999 9999
Q ss_pred CCCEEEEEccccHHHHHHHHH-hCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCC--CcEEEc
Q 014546 179 GSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLAN--GDVIDM 255 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~-~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~d--G~iv~~ 255 (423)
++.+++||||+++.+|+++|. ++|+.++. |+.++++|||+++++++|+.+.+||.++|+|+++|||++| |+++.+
T Consensus 119 ~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~v~~~ 196 (523)
T 2wdx_A 119 SMNAFLIEPGNTLSEVYEKLYLGWNVTIPG--GVCGGVGVGGHICGGGYGPLSRQFGSVVDYLYAVEVVVVNKQGKARVI 196 (523)
T ss_dssp TTTEEEECTTCBHHHHHHHHHHHHSCCCCC--CCCTTCBHHHHHHHTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEEE
T ss_pred CCCEEEEcCCCCHHHHHHHHHHhcCeEEcc--CCCCCCeeCccccCCCCCcccccccChhheEEEEEEEEecCCccEEEE
Confidence 999999999999999999998 59998884 7778889999999999999999999999999999999955 998665
Q ss_pred cCCcccCCCCCCccccccc-CCCCeeEEEEEEEEc-----------ccCCce-eeEEEEEcC
Q 014546 256 LGTLRKDNTGYDLKHLFIG-SEGSLGIVTKVSIHT-----------PPKLSS-VNLAFLACK 304 (423)
Q Consensus 256 ~~~~~k~~~G~dL~~l~~G-s~GtlGIIt~~tl~l-----------~p~p~~-~~~~~~~~~ 304 (423)
.....+.+.++||+|+++| ++|+|||||+++||+ +|.|+. .....+.|+
T Consensus 197 ~~~~~~~~~~~DLf~a~rGgg~g~~GIVt~~~l~l~~~~~~~~~~~~p~~~~~~~~~~~~~~ 258 (523)
T 2wdx_A 197 VATRERDDPHHDLWWAHTGGGGGNFGVVTKYWMRVPEDVGRNPERLLPKPPATLLTSTVTFD 258 (523)
T ss_dssp EEESCTTCTTHHHHHHTTTSCSSSSSEEEEEEECCSSCCCSCGGGSSCCCCSEEEEEEEECC
T ss_pred ecccccCCCChHHHHHhhccCCCCcEEEEEEEEEeecccCCCcccccCCCcccEEEEEEEec
Confidence 3322234556679999996 469999999999999 998863 444555554
No 19
>2ipi_A Aclacinomycin oxidoreductase (aknox); anthracycline, flavoenzyme, twinning, MAD; HET: AKY FAD; 1.65A {Streptomyces galilaeus}
Probab=100.00 E-value=2.9e-33 Score=295.10 Aligned_cols=201 Identities=20% Similarity=0.292 Sum_probs=172.5
Q ss_pred CCCcEecChhHHHHhh-cccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCC
Q 014546 91 GEKSVIQDEDVLLAAN-EDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGS 169 (423)
Q Consensus 91 g~~~v~~~~~~l~~y~-~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~ 169 (423)
+...+..++..+.... +.|+.++.+.|.+|++|+|++||+++|++|+++++|+.++||||++.|.+.+..++++|||++
T Consensus 29 ~~~v~~p~d~~Y~~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~~~vrggGh~~~g~~~~~~~gvvIdl~~ 108 (521)
T 2ipi_A 29 ALVKVDRVDRRYQDLVTRGFNGRFRGRPDVVYVVHTADQVVDAVNQAMAAGQRIAVRSGGHCFEGFVDDPAVRAVIDMSQ 108 (521)
T ss_dssp CCCEEESSSTTHHHHHTCCSCTTCCCCCSEEEECSSHHHHHHHHHHHHHHTCCEEEESSCCCTTCGGGCTTCCEEEECTT
T ss_pred CCeEECCCCcchHHHHhccccccccCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEEECCCcCCCCCcccCCCeEEEeccc
Confidence 3444444555555555 778888889999999999999999999999999999999999999988766556799999999
Q ss_pred CCCeEEEeCCCCEEEEEccccHHHHHHHHH-hCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeC
Q 014546 170 MNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLA 248 (423)
Q Consensus 170 mn~I~~id~~~~~v~VeaGv~~~~L~~~l~-~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~ 248 (423)
||+| ++|+++.+++||||+++.+|+++|. ++|+.+|. |....++|||+++++++|+.+.+||.++|+|+++|||++
T Consensus 109 l~~i-~~d~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~ 185 (521)
T 2ipi_A 109 MRQV-FYDSGKRAFAVEPGATLGETYRALYLDWGVTIPA--GVCPQVGVGGHVLGGGYGPLSRRDGVVADHLYAVEVVVV 185 (521)
T ss_dssp CCCE-EEETTTTEEEECTTSBHHHHHHHHHHHHSBCCCC--CSCTTCBHHHHTTTTCCCTTHHHHCCGGGGEEEEEEEEE
T ss_pred CCCe-EEeCCCCEEEEeCCcCHHHHHHHHHHhcCceeCC--CCCCCcccCCcccCCCCCccccccccHhhcEEEEEEEEe
Confidence 9999 9999999999999999999999997 79999874 555678899999999999999999999999999999997
Q ss_pred C--CcEEEccCCcccCCCCCCcccccccC-CCCeeEEEEEEEEc-----------ccCCc
Q 014546 249 N--GDVIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT-----------PPKLS 294 (423)
Q Consensus 249 d--G~iv~~~~~~~k~~~G~dL~~l~~Gs-~GtlGIIt~~tl~l-----------~p~p~ 294 (423)
| |+++.......+++.++||+|+++|+ +|+|||||+++||+ +|.|+
T Consensus 186 d~~G~i~~~~~~~~~~~~~~DLf~a~rGgg~g~fGIVt~~~l~l~~~~~~~~~~~~p~~~ 245 (521)
T 2ipi_A 186 DASGRARKVVATSAADDPNRELWWAHTGGGGGNFGIVTRYWFRTPGATGTDPSQLLPKAP 245 (521)
T ss_dssp CTTSCEEEEEEECCTTCTTHHHHHHTTTSCSSSSCEEEEEEECCSSCCSSCGGGSSCBCC
T ss_pred cCCccEEEEecccccCCCCHHHHHHHhcCCCCceEEEEEEEEEeecccCCCcccccCCCC
Confidence 7 99765433222344556799999985 69999999999999 99876
No 20
>3pop_A GILR oxidase; FAD binding protein, gilvocarcin, gilvocarcin biosynthesis, covalently bound FAD, oxidoreductase; HET: FAD; 1.65A {Streptomyces griseoflavus} PDB: 3pqb_A*
Probab=100.00 E-value=3.4e-33 Score=293.09 Aligned_cols=197 Identities=13% Similarity=0.162 Sum_probs=169.4
Q ss_pred HhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEc
Q 014546 88 ELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINM 167 (423)
Q Consensus 88 ~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdl 167 (423)
.-+....+..++..+......|+.++...|.+|++|+|++||+++|++|+++++||++|||||++.|.+.+.+++++|||
T Consensus 6 ~s~~~~~~~p~~~~y~~~~~~~n~~~~~~P~~vv~P~s~~dV~~~v~~a~~~~~~v~vrggGh~~~g~~~~~~~gvvIdl 85 (501)
T 3pop_A 6 ASVPPFTVGREDPRYIELSHSDNHRFVVEPEEFFLPATPDDVVASLQKAVTEGRGVACRSGGHCGQDFVGTPRRDLVLDL 85 (501)
T ss_dssp ---CCEEEETTSTTHHHHTCCSCTTSCCCCSEEEECSSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTSSCCSEEEEC
T ss_pred ccCCCceECCCCcchHHHHHHHhhccCCCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEEeCCccCCCccccCCCEEEEEe
Confidence 33444444455555666667788888999999999999999999999999999999999999999988876667999999
Q ss_pred CCCCCeEEEeCCCCEEEEEccccHHHHHHHHH-hCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEE
Q 014546 168 GSMNNIITFDKGSGVLVCEAGCILENLVSFLD-DHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAV 246 (423)
Q Consensus 168 s~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~-~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levV 246 (423)
++||+| ++|+++.+++||||+++.+|+++|. ++|+.+| .|..++++|||+++++++|..+.+||.++|+|+++|||
T Consensus 86 ~~l~~i-~vd~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~--~G~~~~vgvgG~~~gGg~G~~~~~~G~~~D~v~~~evV 162 (501)
T 3pop_A 86 HNLHAI-GPAADGAGVRVGSGATVDQVQKALFRRWNAALP--LGACSAVGMGGLVAGGGYGPLSRQLGLVVDHLHAVEVA 162 (501)
T ss_dssp TTCCCE-EECTTSSSEEEETTCBHHHHHHHHHHHHSBCCC--CCSBTTCBHHHHHHHCCCCTTHHHHCCGGGGEEEEEEE
T ss_pred cccCCe-EEcCCCCEEEEECCcCHHHHHHHHHhhcCeEeC--CCCCCCceEeeccccCCCcccccccccHHHhEEEEEEE
Confidence 999998 8999999999999999999999996 5799887 46667788999999999999999999999999999999
Q ss_pred e--CCCc--EEEccCCcccCCCCCCcccccccC-CCCeeEEEEEEEEc
Q 014546 247 L--ANGD--VIDMLGTLRKDNTGYDLKHLFIGS-EGSLGIVTKVSIHT 289 (423)
Q Consensus 247 l--~dG~--iv~~~~~~~k~~~G~dL~~l~~Gs-~GtlGIIt~~tl~l 289 (423)
+ +||+ ++..++. ....++||+|+++|+ +|+|||||+++||+
T Consensus 163 ~~da~G~~~~v~~~~~--~~~~~~DLf~a~rG~G~g~fGIVt~~~lk~ 208 (501)
T 3pop_A 163 VVDESRTVRLVTARAD--DTGDLGELFWAHTGGGGGNFGVVTAYEFRS 208 (501)
T ss_dssp EECTTSCEEEEEEETT--CCHHHHHHHHHTTTSCTTSSCEEEEEEECC
T ss_pred EecCCCCEEEEEeccC--CCCCCccHHHHhhccCCCCcEEEEEEEEEe
Confidence 9 8999 5554321 123568999999998 79999999999998
No 21
>2y3s_A TAML; oxidoreductase; HET: FAD TIR; 1.67A {Streptomyces SP} PDB: 2y3r_A* 2y08_A* 2y4g_A*
Probab=100.00 E-value=3e-32 Score=287.78 Aligned_cols=192 Identities=20% Similarity=0.263 Sum_probs=166.9
Q ss_pred ChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEe
Q 014546 98 DEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFD 177 (423)
Q Consensus 98 ~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id 177 (423)
++..+......|+.++.+.|.+|++|+|++||+++|++|+++++||.++||||++.+.+.+..++++|||++||+| ++|
T Consensus 40 ~~~~Y~~~~~~~n~~~~~~p~~vv~p~s~~dv~~~v~~a~~~~~~v~v~ggGh~~~g~~~~~~~gvvIdl~~l~~i-~~d 118 (530)
T 2y3s_A 40 GDIRYEDLRRGENLRFVGDPEEIHLVGSAAEIEQVLSRAVRSGKRVAVRSGGHCYEDFVANSDVRVVMDMSRLSAV-GFD 118 (530)
T ss_dssp TSTTHHHHTCCSCTTCCCCCSEEEECCSHHHHHHHHHHHHHTTCCEEEESSCCCSSSTTTCTTCCEEEECTTCCCE-EEE
T ss_pred CCccHHHHHhHhhhhccCCCCEEEecCCHHHHHHHHHHHHHcCCcEEEECCCCCCCCCcccCCCeEEEEcccCCCE-EEc
Confidence 3344555556787788889999999999999999999999999999999999999887765567999999999999 999
Q ss_pred CCCCEEEEEccccHHHHHHHHHh-CCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEe--CCCcEEE
Q 014546 178 KGSGVLVCEAGCILENLVSFLDD-HGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVL--ANGDVID 254 (423)
Q Consensus 178 ~~~~~v~VeaGv~~~~L~~~l~~-~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl--~dG~iv~ 254 (423)
+++.+|+||||+++.+|.++|.+ +|+.++. |+.+++++||++++++.|+.+.+||.++|+|+++|||+ ++|+++.
T Consensus 119 ~~~~~v~v~aG~~~~~l~~~l~~~~Gl~~~~--G~~~~vgvgG~~~gGg~g~~s~~~G~~~D~v~~~evV~~d~~G~i~~ 196 (530)
T 2y3s_A 119 EERGAFAVEAGATLGAVYKTLFRVWGVTLPG--GACPDVGAGGHILGGGYGPLSRMHGSIVDYLHAVEVVVVDASGDART 196 (530)
T ss_dssp TTTTEEEEETTCBHHHHHHHHHHHHSCCCCC--CSCTTCBHHHHHHTTCCCTTHHHHCCGGGGEEEEEEEEECTTSCEEE
T ss_pred CCCCEEEEeCCCCHHHHHHHHHhhcCeEEeC--CCCCCCCcCCCcCCCCCCcccccccchhhheeeEEEEEecCCCcEEE
Confidence 99999999999999999999985 9998884 77888899999999999999999999999999999999 5599854
Q ss_pred ccCCcccCCCCC--CcccccccC-CCCeeEEEEEEEEc------------ccCCc
Q 014546 255 MLGTLRKDNTGY--DLKHLFIGS-EGSLGIVTKVSIHT------------PPKLS 294 (423)
Q Consensus 255 ~~~~~~k~~~G~--dL~~l~~Gs-~GtlGIIt~~tl~l------------~p~p~ 294 (423)
+... +...++ ||+|+++|+ +|+|||||+++||+ +|.|+
T Consensus 197 v~~~--~~~~~~d~DLf~a~rG~g~g~fGIVt~~~l~l~~~~~~~~~~~~~p~~~ 249 (530)
T 2y3s_A 197 VIAT--REPSDPNHDLWWAHTGGGGGNFGVVVRYWLRTAEADVPPEPGRLLPRPP 249 (530)
T ss_dssp EEEE--SCTTCTTHHHHHHTTTSCTTSSCEEEEEEECCCCSSCCSCGGGSSCCCC
T ss_pred Eecc--ccccCCChHHHHHHhcCCCCCcEEEEEEEEEeecccCccccccccCCCC
Confidence 4221 111334 499999987 69999999999999 99875
No 22
>3tx1_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural genomics of infec diseases, csgid; HET: FAD; 2.69A {Listeria monocytogenes}
Probab=99.97 E-value=2.6e-31 Score=264.09 Aligned_cols=274 Identities=15% Similarity=0.196 Sum_probs=195.1
Q ss_pred CCHHHHHHHHHhhCCCcEecChhHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCcc
Q 014546 78 LNSEDVSYFKELLGEKSVIQDEDVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSV 157 (423)
Q Consensus 78 ~~~~~l~~L~~ilg~~~v~~~~~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~ 157 (423)
|+++++++|++++++++|.++ +++..|++ .++++.|++++.|+|++||++++++|+++++|++++|+|||+.+++.
T Consensus 20 ~~~~~~~~L~~~lg~~~v~~~-~~l~~~tt---~~igg~p~~vv~P~s~eev~~~v~~a~~~~~pv~v~GgGsnl~~~~~ 95 (322)
T 3tx1_A 20 FQSNAMNNLQTKFPHIAIKLN-EPLSKYTY---TKTGGAADVFVMPKTIEEAQEVVAYCHQNKIPLTILGNGSNLIIKDG 95 (322)
T ss_dssp -----CCCHHHHCTTSEEEEE-EEGGGGST---TSCCCEEEEEEECSSHHHHHHHHHHHHHTTCCEEEESCCTTEEECTT
T ss_pred cCHHHHHHHHHhcCCcceEcC-cchHHhcc---CCcCceeeEEEEeCCHHHHHHHHHHHHHcCCcEEEECCccCCCcCCC
Confidence 566788899999999889888 67888883 46889999999999999999999999999999999999999976544
Q ss_pred ccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccc-cc
Q 014546 158 PVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRY-GS 235 (423)
Q Consensus 158 ~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~y-G~ 235 (423)
+ .++++|||++||+| .+| +.+++||||++|.+|.+++.++|+. +.+.++.+ +||||++++|+|| | |.
T Consensus 96 ~-~~gvvI~l~~~~~I-~~d--~~~v~v~aG~~~~~l~~~l~~~Gl~Gle~~~giP--gTVGGav~~NaGg-----yGg~ 164 (322)
T 3tx1_A 96 G-IRGVILHLDLLQTI-ERN--NTQIVAMSGAKLIDTAKFALNESLSGLEFACGIP--GSIGGALHMNAGA-----YGGE 164 (322)
T ss_dssp C-EEEEEEECTTCCCE-EEE--TTEEEEETTSBHHHHHHHHHHTTEESCGGGTTCC--SBHHHHHHHTCEE-----TTEE
T ss_pred C-CCeEEEECCCCCcE-EEC--CCEEEEecCcCHHHHHHHHHHcCCcccccCCCCc--chhHHHHHhCccC-----cccc
Confidence 3 36899999999999 576 3599999999999999999999995 33334444 4699999999999 7 68
Q ss_pred ccceEeEEEEEeCCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHH
Q 014546 236 LHGNVLGLEAVLANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLRE 315 (423)
Q Consensus 236 ~~d~V~~levVl~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~ 315 (423)
++|+|+++++|++||++++++. +..+|++.+.+.|+++ ||||+++||+.|.|+. +..+.++.+..
T Consensus 165 ~~d~v~~vevV~~~G~i~~~~~----~~~~~~yR~s~~g~~~--~IIt~~tl~L~p~~~~---------~i~~~~~~~~~ 229 (322)
T 3tx1_A 165 ISDVLEAATVLTQTGELKKLKR----SELKAAYRFSTIAEKN--YIVLDATFSLALEEKN---------LIQAKMDELTA 229 (322)
T ss_dssp HHHHEEEEEEECTTSCEEEEEG----GGCC--CC-CTTTGGG--CEEEEEEEECEECCHH---------HHHHHHHHHHH
T ss_pred hHhhEEEEEEEcCCCCEEEech----HHcCcchhhcccCCCC--EEEEEEEEEEEeCCHH---------HHHHHHHHHHH
Confidence 9999999999999999999764 4467777777777765 7999999999998752 23444555555
Q ss_pred HHHHcCC--CceE-EEeeCH---HHHHHHHhhc-cCCC---CCCCCCccceEEEEEecCCChHHHHHHHHHHHHHHhh
Q 014546 316 AKRKLGE--ILSA-FEFLDN---QSMDLVLTYL-EGVR---NPFSSSMHNFYVLIETTGSEESYDREKLEAFLLSSME 383 (423)
Q Consensus 316 ~~~~~~~--~~~a-~E~~d~---~~~~~~~~~~-~~~~---~~~~~~~~~~~llie~~g~~~~~~~~~l~~~~~~~~~ 383 (423)
.|+...+ .|++ .-|-+. .+-.++++.. .+.+ ..+.+. -+-.+|-..+.+.+++.+.++.+.+.+.+
T Consensus 230 ~R~~kqP~~~~saGS~FknP~g~~Ag~LIe~~GlkG~~~G~a~vs~k--ha~fivN~g~Ata~dv~~L~~~v~~~V~~ 305 (322)
T 3tx1_A 230 AREAKQPLEYPSCGSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLK--HAGFIVNIGGATATDYMNLIAYVQQTVRE 305 (322)
T ss_dssp HHHHHSCCSSCBCSCCBCCCTTSCHHHHHHHTTCTTCEETTEEECSS--CTTCEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCceeEEEECCCCchHHHHHHHcCCCCceeCCeEEEcC--CCCEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 5543322 1222 223332 2445555421 1111 012222 23455677666665555555555444444
No 23
>3js8_A Cholesterol oxidase; cholsterol, organic solvent stability, oxygen channel, FAD, flavoprotein, oxidoreductase; HET: FAD SUC; 1.54A {Chromobacterium SP}
Probab=99.97 E-value=1.1e-30 Score=274.33 Aligned_cols=194 Identities=17% Similarity=0.289 Sum_probs=165.9
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCC-----CCccccCCeEEEEcC-CCCCeEEEeCC
Q 014546 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLV-----GGSVPVFDEVIINMG-SMNNIITFDKG 179 (423)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~-----g~~~~~~~gvvIdls-~mn~I~~id~~ 179 (423)
-++|+..+.+.|.+|++|+|++||+++|++|+++++||+++|+|||+. ++. +..++++|||+ +||+| ++|++
T Consensus 19 ~~nWs~~~~~~P~~vv~P~s~eEV~~~Vk~A~~~~~pv~v~GgGhs~~~l~~~gG~-~~~~GVvIdls~~Ln~I-~vD~~ 96 (540)
T 3js8_A 19 FKNWAGDIKVDDVWTCAPRSADEVVKVANWAKDNGYKVRARGMMHNWSPLTLAAGV-SCPAVVLLDTTRYLTAM-SIDAS 96 (540)
T ss_dssp EECTTSCCEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECSCCCSSCSSCCTTC-SSCSEEEEETTTTCCCE-EEECS
T ss_pred eeccccccCCCccEEEEcCCHHHHHHHHHHHHHcCCeEEEEeCCCCcccccccCCC-CCCCeEEEECcCcCCCE-EECCC
Confidence 357888889999999999999999999999999999999999999986 554 55789999995 69999 99985
Q ss_pred --CCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCC----------ccccccccceEeEEEEEe
Q 014546 180 --SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLEAVL 247 (423)
Q Consensus 180 --~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~----------~~~yG~~~d~V~~levVl 247 (423)
..+|+||||+++.+|+++|.++|+.++..+++ +.+||||++++|+||.+ +.+||.++|+|+++++|+
T Consensus 97 ~~~~tVtV~AGv~l~~L~~~L~~~GL~l~~~~gi-~~~TVGGaia~gagG~~~~~~G~~~~~g~~~G~~~D~V~~levV~ 175 (540)
T 3js8_A 97 GPVAKVTAQAGITMEALLTGLEKAGLGVTAAPAP-GDLTLGGVLAINGHGTAIPAKGERRLAGASYGSISNLVLSLTAVV 175 (540)
T ss_dssp SSSEEEEEETTSBHHHHHHHHHHTTEECSCCCSC-SCSBHHHHHHTTCCCCBCCCTTCCCCTTCCSSCGGGGEEEEEEEE
T ss_pred CCccEEEEccCCCHHHHHHHHHHcCCEEEecCCC-CCeEEcccccCCCCcccccccccccccccccccHHHhEEEEEEEc
Confidence 57999999999999999999999999988886 45899999999999986 479999999999999999
Q ss_pred CCCc-----EEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHH
Q 014546 248 ANGD-----VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQK 311 (423)
Q Consensus 248 ~dG~-----iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~ 311 (423)
+||+ ++.++. .++||++++.|+ |+ ||||+++|+++|.+......+. .-+++++.+
T Consensus 176 adG~~~~~~i~~~s~------~~~DL~a~r~G~-G~-gIVTevtlrl~P~~~l~~~~~~-~~~~~e~l~ 235 (540)
T 3js8_A 176 YDKASGAYALRKFAR------NDPQIAPLLAHV-GR-SLIVEATLQAAPNQRLRCQSWF-NIPYGEMFA 235 (540)
T ss_dssp EETTTTEEEEEEEET------TSGGGHHHHTCT-TS-SCEEEEEEEEEECCEEEEEEEC-CSCHHHHTC
T ss_pred CCCCCceeeEEEeCC------CChhHHHHHhcC-CC-eEEEEEEEEEEECCceEEEEEe-cCCHHHHHh
Confidence 9998 666542 367987666555 77 6999999999999887654322 235677664
No 24
>2i0k_A Oxidoreductase; MIX alpha beta, covalent FAD, flavoenzyme; HET: FAD; 1.60A {Brevibacterium sterolicum} SCOP: d.58.32.3 d.145.1.1 PDB: 1i19_A*
Probab=99.97 E-value=1e-30 Score=277.92 Aligned_cols=200 Identities=21% Similarity=0.305 Sum_probs=169.3
Q ss_pred HHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccc----cCCeEEEEc-CCCCCeEEE
Q 014546 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVP----VFDEVIINM-GSMNNIITF 176 (423)
Q Consensus 102 l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~----~~~gvvIdl-s~mn~I~~i 176 (423)
+..+.++|+..+.+.|.+|+.|+|++||+++|++|+++++|++++|+|||+.+.+.. ..++++||| ++||+| ++
T Consensus 21 y~~~~~~w~~~~~~~p~~vv~P~s~~ev~~~v~~a~~~~~~v~~~G~G~s~~~~~l~~~~~~~~gvvIdl~~~l~~i-~v 99 (561)
T 2i0k_A 21 FQQAYQNWSKEIMLDATWVCSPKTPQDVVRLANWAHEHDYKIRPRGAMAGWTPLTVEKGANVEKVILADTMTHLNGI-TV 99 (561)
T ss_dssp EEEEEECTTSSSEEEEEEEECCSSHHHHHHHHHHHHHHTCEEEEECCCCCCCTTSSCTTCCCTTEEEEECTTTSCCE-EE
T ss_pred HHHHHhhhhhccCCCCCEEEecCCHHHHHHHHHHHHHCCCcEEEECCCCCcccccccCCCcCCCeEEEechhhCCce-Ee
Confidence 334457898889999999999999999999999999999999999999998542221 136899999 899999 99
Q ss_pred eC--CCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCC----------ccccccccceEeEEE
Q 014546 177 DK--GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLR----------LVRYGSLHGNVLGLE 244 (423)
Q Consensus 177 d~--~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~----------~~~yG~~~d~V~~le 244 (423)
|+ ++.+|+||||+++.+|+++|.++|+.+|+.|++ +.+||||++++|+||.. +.+||.++|+|++++
T Consensus 100 d~~~~~~~v~v~aGv~l~~L~~~l~~~Gl~l~~~~~~-~~~TvGG~i~~~~~G~~l~~gG~~~~s~~~~G~~~d~V~~~e 178 (561)
T 2i0k_A 100 NTGGPVATVTAGAGASIEAIVTELQKHDLGWANLPAP-GVLSIGGALAVNAHGAALPAVGQTTLPGHTYGSLSNLVTELT 178 (561)
T ss_dssp ECCSSSCEEEEETTSBHHHHHHHHHHTTEECSSCCSC-TTCBHHHHHHTTCCCSCCCCTTCCCCTTCCSSCGGGGEEEEE
T ss_pred cCcCCccEEEEcCCCCHHHHHHHHHHcCCcccccCCC-CCcccCCCcccCCcccccccCCcccccccccccHhheEEEEE
Confidence 98 889999999999999999999999999998886 56899999999999986 778999999999999
Q ss_pred EEeCCCc---EEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHH
Q 014546 245 AVLANGD---VIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKL 312 (423)
Q Consensus 245 vVl~dG~---iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~ 312 (423)
+|++||+ ++++.. + ..||+++++|. |. ||||+++|++.|.|+.....+..++ ++++.+.
T Consensus 179 vV~~dG~~~~~~~~~~----~--~~dl~~a~~g~-G~-giIt~~tl~l~p~~~~~~~~~~~~~-~~~~l~~ 240 (561)
T 2i0k_A 179 AVVWNGTTYALETYQR----N--DPRITPLLTNL-GR-CFLTSVTMQAGPNFRQRCQSYTDIP-WRELFAP 240 (561)
T ss_dssp EEEECSSSEEEEEEET----T--SGGGHHHHSCT-TS-SCEEEEEEECEECCEEEEEEECCSC-HHHHTCC
T ss_pred EEeCCCCEEEeeeccC----C--CccHHHHHhcC-CC-EEEEEEEEEEEECCceEEEEEEccC-HHHHHHH
Confidence 9999999 666543 2 34898888854 55 8999999999999987766555454 5554443
No 25
>1uxy_A MURB, uridine diphospho-N-acetylenolpyruvylglucosamine reductase; peptidoglycan synthesis, cell WALL, cell division, oxidoreductase, NADP; HET: FAD EPU; 1.80A {Escherichia coli} SCOP: d.145.1.2 d.146.1.1 PDB: 1mbb_A* 1mbt_A* 2q85_A* 2mbr_A*
Probab=99.94 E-value=4.6e-26 Score=227.90 Aligned_cols=203 Identities=15% Similarity=0.141 Sum_probs=161.5
Q ss_pred HHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCC-
Q 014546 102 LLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS- 180 (423)
Q Consensus 102 l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~- 180 (423)
+..|+ ++++++.|++++.|+|++||++++++|+++++|++++|||||+.+.+. .+|+||+++ |++|..++.++
T Consensus 3 L~~~t---t~~igg~a~~~v~p~s~eel~~~l~~a~~~~~pv~vlGgGSnll~~d~--~~GvVI~l~-~~~i~~i~~~~~ 76 (340)
T 1uxy_A 3 LKPWN---TFGIDHNAQHIVCAEDEQQLLNAWQYATAEGQPVLILGEGSNVLFLED--YRGTVIINR-IKGIEIHDEPDA 76 (340)
T ss_dssp CGGGS---TTCCCCBEEEEEEESSHHHHHHHHHHHHHTTCCEEEESSCTTEEECSC--EEEEEEEEC-CCCEEEEECSSE
T ss_pred ccccc---cCCCCccccEEEEeCCHHHHHHHHHHHHHcCCCEEEECCCcCCcccCC--CCeEEEEcc-CCCcEEEecCCC
Confidence 34555 467889999999999999999999999999999999999999987653 368999996 99997777776
Q ss_pred CEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeC-CCcEEEccC
Q 014546 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVIDMLG 257 (423)
Q Consensus 181 ~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~-dG~iv~~~~ 257 (423)
.+++|+||++|.+|.+++.++|+. +....++++ ||||++.+|+|+ ||. ++|+|.++++|++ ||++++++.
T Consensus 77 ~~v~vgAG~~~~~l~~~~~~~Gl~Gle~~~gIPG--tVGGa~~~NaGa-----yG~ei~d~v~~v~vv~~~~G~v~~~~~ 149 (340)
T 1uxy_A 77 WYLHVGAGENWHRLVKYTLQEGMPGLENLALIPG--CVGSSPIQNIGA-----YGVELQRVCAYVDSVELATGKQVRLTA 149 (340)
T ss_dssp EEEEEETTSBHHHHHHHHHHTTCCSCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEEEET
T ss_pred eEEEEecCCCHHHHHHHHHHCCCCccccccCCcc--chhHHHHhcccc-----chhhHHhheeEEEEEECCCCcEEEEeH
Confidence 689999999999999999999996 555556664 699999999988 995 9999999999997 999999875
Q ss_pred CcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceee----EEEE--EcCCHHHHHHHHHHHHHHc
Q 014546 258 TLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVN----LAFL--ACKDYFSCQKLLREAKRKL 320 (423)
Q Consensus 258 ~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~----~~~~--~~~~~~~~~~~~~~~~~~~ 320 (423)
. ....||... .+.+++|++||||+++|++.|.|.... ...+ ..++..+..+++.++|+..
T Consensus 150 ~--d~~~gYR~s-~~~~~~~~~gIVt~v~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~k 215 (340)
T 1uxy_A 150 K--ECRFGYRDS-IFKHEYQDRFAIVAVGLRLPKEWQPVLTYGDLTRLDPTTVTPQQVFNAVCHMRTTK 215 (340)
T ss_dssp G--GGTCBTTBC-GGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTTCCHHHHHHHHHHHHHHH
T ss_pred H--HhccccCcC-ccCCcCCCCEEEEEEEEEEEcCCCccCCHHHHhhhccccccHHHHHHHHHHHHHhc
Confidence 4 233444432 334456689999999999999864220 0000 1235577888888877654
No 26
>3i99_A UDP-N-acetylenolpyruvoylglucosamine reductase; structural genomics, center for structural of infectious diseases, csgid; HET: FAD; 2.20A {Vibrio cholerae}
Probab=99.94 E-value=2.4e-26 Score=230.90 Aligned_cols=203 Identities=13% Similarity=0.095 Sum_probs=161.9
Q ss_pred hHHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeC-
Q 014546 100 DVLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDK- 178 (423)
Q Consensus 100 ~~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~- 178 (423)
.++..|+ ++++++.|++++.|+|++||++++++|+++++|++++|+|||+.+.+. .+|+||+++ |++| ++++
T Consensus 17 ~~L~~~t---t~~igg~a~~vv~p~s~eel~~~v~~a~~~~ipv~vlGgGSNll~~d~--~~GvVI~l~-~~~i-~v~~~ 89 (357)
T 3i99_A 17 ANLKPYH---TFGIEQLAAQLVVAESIDDLKALYCSAEWASLPKLIIGKGSNMLFTCH--YTGMIVVNR-LNGI-EHQQD 89 (357)
T ss_dssp EESGGGS---TTCCSCEEEEEEEECSHHHHHHHHSSSTTTTSCEEEESSCTTEEECSC--EEEEEEEEC-CCCE-EEEEC
T ss_pred Ccchhhc---cCCCCccceEEEEECCHHHHHHHHHHHHHcCCCEEEECCCcCcccCCC--CCeEEEEcC-CCce-EEecc
Confidence 4577777 568899999999999999999999999999999999999999977654 468999998 9998 6653
Q ss_pred -CCCEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCcccccc-ccceEeEEEEEeC-CCcEEE
Q 014546 179 -GSGVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYGS-LHGNVLGLEAVLA-NGDVID 254 (423)
Q Consensus 179 -~~~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG~-~~d~V~~levVl~-dG~iv~ 254 (423)
++.+++|+||++|.+|.+++.++|+. +....++++ ||||++++|+|. ||. ++|+|+++++|++ ||++++
T Consensus 90 ~~~~~v~v~AG~~~~~l~~~a~~~Gl~GlE~l~gIPG--tVGGav~~NaGa-----YG~e~~d~v~~vevv~~~~G~i~~ 162 (357)
T 3i99_A 90 DDYHRLHVAGGEDWPSLVSWCVEQGIGGLENLALIPG--CAGSAPIQNIGA-----YGVEFKDVCDYVEYLCLETGTVKR 162 (357)
T ss_dssp SSEEEEEEETTSBHHHHHHHHHHTTCTTCGGGTTCCS--BGGGTTTTTCEE-----TTEEGGGTEEEEEEEETTTTEEEE
T ss_pred CCceEEEEeCCCcHHHHHHHHHHcCCcCccccCCCCc--hhHHHHHhchhh-----hhhhHHhhEeEEEEEECCCCcEEE
Confidence 45689999999999999999999997 555566664 599999999986 997 9999999999998 999999
Q ss_pred ccCCcccCCCCCCcccc-cccCCCCeeEEEEEEEEcccCCceeeE-----EEEEcCCHHHHHHHHHHHHHHc
Q 014546 255 MLGTLRKDNTGYDLKHL-FIGSEGSLGIVTKVSIHTPPKLSSVNL-----AFLACKDYFSCQKLLREAKRKL 320 (423)
Q Consensus 255 ~~~~~~k~~~G~dL~~l-~~Gs~GtlGIIt~~tl~l~p~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 320 (423)
.... ..++++.+. +.+++|++||||+++|+|.|.|..... ..+..++.++..+++.++|+..
T Consensus 163 ~~~~----dl~f~YR~s~~~~~~g~~gIIt~v~f~L~p~~~~~~~y~~l~~~l~~~~~~~~~~~v~~~R~~k 230 (357)
T 3i99_A 163 LTME----ECQFGYRDSIFKHQLYQKAVVTAVGLKFAKAWQPIIQYGPLKDLSSDCAIHDVYQRVCATRMEK 230 (357)
T ss_dssp EETG----GGCCBTTBCGGGTTTTTTEEEEEEEEEEESSCCCCCCSGGGGGSCTTCCHHHHHHHHHHHHHHH
T ss_pred EeHH----HcCcccccccCCCccCCCEEEEEEEEEEEeCCccccchHHHHhhhccCCHHHHHHHHHHHHhcC
Confidence 8653 222333332 334457999999999999998642110 0002345677788888877654
No 27
>2gqt_A UDP-N-acetylenolpyruvylglucosamine reductase; peptidoglycan biosynthesis, enolpyruvyl-UDP-N- acetylglucosamine, flavin adenine dinucleotide; HET: FAD; 1.30A {Thermus caldophilus} PDB: 2gqu_A*
Probab=99.91 E-value=7e-25 Score=212.44 Aligned_cols=230 Identities=20% Similarity=0.185 Sum_probs=161.3
Q ss_pred HHHHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCccccCCeEEEEcCCCCCeEEEeCCC
Q 014546 101 VLLAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGSVPVFDEVIINMGSMNNIITFDKGS 180 (423)
Q Consensus 101 ~l~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~~~~~~gvvIdls~mn~I~~id~~~ 180 (423)
++..|+ +.+++++|+ +++|+|++||++++ ++|++++|+|||+.+++.+.++|++|++++|++| ++| +
T Consensus 10 ~l~~~t---t~~igg~a~-vv~p~s~edv~~~v------~ipv~v~GgGsnll~~d~~~~~GvVI~l~~~~~I-~vd--~ 76 (268)
T 2gqt_A 10 LLKDYT---TLGVGGPAE-LWTVETREELKRAT------EAPYRVLGNGSNLLVLDEGVPERVIRLAGEFQTY-DLK--G 76 (268)
T ss_dssp EGGGGS---SSCCCCEEE-EEEECSHHHHHHHT------TSCEEECSSSSSEEECTTCCSSEEEEECGGGGCB-CTT--S
T ss_pred ChHHhc---ccccCcceE-EEEeCCHHHHHHHh------CCCeEEcCCCcCceecCCCcCCeEEEEcCCCCCc-EEc--C
Confidence 466676 347788899 99999999999999 9999999999999988777666999999999998 565 2
Q ss_pred CEEEEEccccHHHHHHHHHhCCCC-cccCCCCCCcceeccccccCCCCCCccccc-cccceEeEEEEEeCCCcEEEccCC
Q 014546 181 GVLVCEAGCILENLVSFLDDHGFI-MPLDLGAKGSCQIGGNVSTNAGGLRLVRYG-SLHGNVLGLEAVLANGDVIDMLGT 258 (423)
Q Consensus 181 ~~v~VeaGv~~~~L~~~l~~~Gl~-~~~~pgs~~~~tIGG~va~nagG~~~~~yG-~~~d~V~~levVl~dG~iv~~~~~ 258 (423)
+|+||++|.+|.+++.++|+. +.+..+.++ ||||++++|+|+ || .++|+|+++++| +||++++.+..
T Consensus 77 ---~v~aG~~~~~l~~~~~~~Gl~Gle~~~giPG--tvGGav~~NaGa-----yG~e~~d~v~~v~vv-~~G~v~~~~~~ 145 (268)
T 2gqt_A 77 ---WVGAGTLLPLLVQEAARAGLSGLEGLLGIPA--QVGGAVKMNAGT-----RFGEMADALEAVEVF-HDGAFHVYCPE 145 (268)
T ss_dssp ---EEETTSBHHHHHHHHHHTTEESCGGGTTCCC--BHHHHHHTTCEE-----TTEEGGGGEEEEEEE-ETTEEEEECGG
T ss_pred ---EEECCCCHHHHHHHHHHcCCcCCccccCccc--hhHHHHHhcccc-----CchhHHhheeEEEEE-CCCcEEEEchH
Confidence 899999999999999999996 444445554 699999999987 99 699999999999 99999998753
Q ss_pred cccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHHHHcCCCceE-EEeeCH---HH
Q 014546 259 LRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAKRKLGEILSA-FEFLDN---QS 334 (423)
Q Consensus 259 ~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a-~E~~d~---~~ 334 (423)
....+|+. .....+| |||+++|||.|.+ ++++++..+++.++|+.....|++ .-|.|. .+
T Consensus 146 --~l~~~YR~--s~~~~~g---IVt~~~~~L~~~~---------~~~i~~~~~~v~~~R~~~P~~~saGS~FknP~g~~A 209 (268)
T 2gqt_A 146 --ELGFGYRK--SHLPPGG---IVTRVRLKLKERP---------KEEILRRMAEVDRARKGQPKRKSAGCAFKNPPGQSA 209 (268)
T ss_dssp --GSCCBTTB--CCCSTTC---EEEEEEECCEECC---------HHHHHHHHHHHHHHTTTSCSSCSSSCCBCCCTTCCH
T ss_pred --HcccccCC--CCcCCCc---eEEEEEEEEEeCC---------HHHHHHHHHHHHHHHHhCCCCcceEEEEECCCCchH
Confidence 22233332 2222233 9999999999974 345555566666665430111211 224442 34
Q ss_pred HHHHHhh-ccCCC---CCCCCCccceEEEEEecCCChHHHHH
Q 014546 335 MDLVLTY-LEGVR---NPFSSSMHNFYVLIETTGSEESYDRE 372 (423)
Q Consensus 335 ~~~~~~~-~~~~~---~~~~~~~~~~~llie~~g~~~~~~~~ 372 (423)
-.++++. +.+.+ ..+.+. .+-.||-..+.+.+++.+
T Consensus 210 g~LIe~~GlkG~~~G~a~vs~k--ha~fivN~g~ata~dv~~ 249 (268)
T 2gqt_A 210 GRLIDERGLKGLRVGDAMISLE--HGNFIVNLGQARAKDVLE 249 (268)
T ss_dssp HHHHHHTTCTTCEETTEEECSS--CTTCEEECSSCCHHHHHH
T ss_pred HHHHHHcCCCCCccCCeEECcc--cCCeEEECCCCCHHHHHH
Confidence 5666553 11111 112222 234566776666554444
No 28
>2yvs_A Glycolate oxidase subunit GLCE; oxidoreductase; 2.00A {Thermus thermophilus}
Probab=99.90 E-value=3.6e-24 Score=201.75 Aligned_cols=127 Identities=24% Similarity=0.282 Sum_probs=117.1
Q ss_pred EEeCCCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCCCCccccccccceEeEEEEEeCCCcEEE
Q 014546 175 TFDKGSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVLGLEAVLANGDVID 254 (423)
Q Consensus 175 ~id~~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~~levVl~dG~iv~ 254 (423)
++|+++.+++||||+++.+|+++|.++|+++|.+|++... ||||++++|+|| .+||.. |+|+++++|++||++++
T Consensus 2 ~vd~~~~~v~V~aGv~l~~L~~~l~~~Gl~~~~~Pg~~~~-tVGG~v~~nagG---~~yG~~-D~V~~vevV~~dG~i~~ 76 (219)
T 2yvs_A 2 EVHAADQYLVAPGEADLLEVHARLAGTGLFPPFPPVELPG-GVGGLVARGGFA---QTFFFP-AEVLGLTFRTPKGRRVR 76 (219)
T ss_dssp EEETTTTEEEEETTCCHHHHHHHHTTTTEECSSCSEECTT-HHHHHHHTTCSS---BSSCGG-GGEEEEEEECTTSCEEE
T ss_pred eEcCCCCEEEEcCCCcHHHHHHHHHHcCCEEeccCCCCCC-chhheeccCccc---ccCCCc-cEEEEEEEEeCCCCEEE
Confidence 7899999999999999999999999999999998886665 999999999998 899999 99999999999999999
Q ss_pred ccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCH
Q 014546 255 MLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDY 306 (423)
Q Consensus 255 ~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~ 306 (423)
++....|+..||||+++++|++|+|||||+++||++|.|+.....++.+.++
T Consensus 77 ~~~~~~kn~~gydl~~~~~Gs~G~lGIVt~~tlrl~p~~~~~~~~~~~~~~~ 128 (219)
T 2yvs_A 77 AGGVVVKNVQGYDLVRLFVGSFGLLGRAEEVVLRLRPGRAQAFLRRPFSGSF 128 (219)
T ss_dssp EECSSCSSSSCSCHHHHHTTCTTTTCEEEEEEEECEECSEEEEEEEECCSSC
T ss_pred ECCccccCCCCcchHHHhccCCCceEEEEEEEEEEEECCcccEEEEEecCCH
Confidence 9887678889999999999999999999999999999999877766666543
No 29
>1ffv_C CUTM, flavoprotein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: d.87.2.1 d.145.1.3 PDB: 1ffu_C*
Probab=98.63 E-value=9.2e-08 Score=93.18 Aligned_cols=156 Identities=13% Similarity=0.102 Sum_probs=97.0
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCC--ccccCCeEEEEcCC---CCCeEEEeCCCCEEEEEccccH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~--~~~~~~gvvIdls~---mn~I~~id~~~~~v~VeaGv~~ 191 (423)
+--++.|+|.+|+.++++.. +.+..+.||||++.-. ......+++||+++ |+.| +. +++.++++||+++
T Consensus 5 ~~~~~~P~s~~ea~~ll~~~---~~~~~ilaGGT~ll~~~~~~~~~~~~lIdl~~i~eL~~i-~~--~~~~l~iGA~~tl 78 (287)
T 1ffv_C 5 RFEYHAPKSVGEAVALLGQL---GSDAKLLAGGHSLLPMMKLRFAQPEHLIDINRIPELRGI-RE--EGSTVVIGAMTVE 78 (287)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCE-EE--ETTEEEEETTCBH
T ss_pred cceEECCCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34588999999999999753 3578999999996321 11113478999985 6666 44 3456999999999
Q ss_pred HHHHHH-HHhCCCC-c------ccCCCCCCcceeccccccCCCCCCccccccccceEe----EEEEEeCCCcEEEccCCc
Q 014546 192 ENLVSF-LDDHGFI-M------PLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGTL 259 (423)
Q Consensus 192 ~~L~~~-l~~~Gl~-~------~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~----~levVl~dG~iv~~~~~~ 259 (423)
.+|.+. +.++++. + --.+...+..||||+|++|++ .+.+...++ .+++..++| ..+....
T Consensus 79 ~~l~~~~~~~~~~~~L~~a~~~~a~~qiRN~gTvGGni~~~~~------~~D~~~~l~Al~A~v~~~~~~G-~r~i~~~- 150 (287)
T 1ffv_C 79 NDLISSPIVQARLPLLAEAAKLIADPQVRNRGTIGGDIAHGDP------GNDHPALSIAVEAHFVLEGPNG-RRTVPAD- 150 (287)
T ss_dssp HHHHHCHHHHHHCHHHHHHGGGSSCTTGGGTCBHHHHHHTCCT------TCSHHHHHHHTTCEEEEEETTE-EEEEEST-
T ss_pred HHHhhChHHHHHhHHHHHHHHHhCCHHHhcceechhhhccCCC------cHHHHHHHHHcCcEEEEEcCCc-eEEEEHH-
Confidence 999963 3333332 1 112333345789999999865 233332222 578888999 3443221
Q ss_pred ccCCCCCCcccccccCCCCeeEEEEEEEEcccC
Q 014546 260 RKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPK 292 (423)
Q Consensus 260 ~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~ 292 (423)
....||.-. .+ . .| .|||+++|.+.+.
T Consensus 151 -df~~g~~~t-~l-~-~~--eii~~i~ip~~~~ 177 (287)
T 1ffv_C 151 -GFFLGTYMT-LL-E-EN--EVMVEIRVPAFAQ 177 (287)
T ss_dssp -TTEEETTEE-SC-C-TT--CEEEEEEEECCCT
T ss_pred -HHhcCcccc-cC-C-CC--CEEEEEEecCCCC
Confidence 111222100 01 0 12 5799999987663
No 30
>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*
Probab=97.92 E-value=4.5e-06 Score=86.35 Aligned_cols=151 Identities=14% Similarity=0.130 Sum_probs=95.7
Q ss_pred CCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCC--ccccCCeEEEEcCC---CCCeEEEeCCCCEEEEEccc
Q 014546 115 GSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGC 189 (423)
Q Consensus 115 ~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~--~~~~~~gvvIdls~---mn~I~~id~~~~~v~VeaGv 189 (423)
|....++.|+|.+|+.++++.. . +..+.||||++.-. .-....+++||+++ |+.| +.+ ++.++++||+
T Consensus 175 G~a~~y~~P~sl~ea~~ll~~~---~-~a~ilaGGT~L~~~~k~~~~~~~~lIdl~~i~eL~~I-~~~--~~~l~IGA~v 247 (462)
T 2w3s_A 175 GQTAPAFLPETSDALADWYLAH---P-EATLIAGGTDVSLWVTKALRDLPEVAFLSHCKDLAQI-RET--PDGYGIGAGV 247 (462)
T ss_dssp ----CCBCCSSHHHHHHHHHHC---T-TCEEESSCTTTTHHHHTSCCCCCSEEECTTCGGGSCE-EEE--TTEEEEETTC
T ss_pred CCccEEEecCCHHHHHHHHhhC---C-CCEEEeCCchhhhhhhccCCCCCEEEEcCCChhhCcE-EEc--CCEEEEccCC
Confidence 4445688999999999998753 2 46778999997431 10113468999998 6776 454 4569999999
Q ss_pred cHHHHHHHHHhCCCC-c----c--cCCCCCCcceeccccccCCCCCCccccccccceEe----EEEEEeCCCcEEEccCC
Q 014546 190 ILENLVSFLDDHGFI-M----P--LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLANGDVIDMLGT 258 (423)
Q Consensus 190 ~~~~L~~~l~~~Gl~-~----~--~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~----~levVl~dG~iv~~~~~ 258 (423)
++.+|.+.+. ..+. + . -.+...+.+||||+|++++. .+.+...++ .+++..++|+ .+..
T Consensus 248 tl~~l~~~l~-~~~p~L~~a~~~ia~~qIRN~gTvGGNl~~~sp------~sD~~~~L~ALdA~v~l~~~~G~-R~vp-- 317 (462)
T 2w3s_A 248 TIAALRAFAE-GPHPALAGLLRRFASEQVRQVATIGGNIANGSP------IGDGPPALIAMGASLTLRRGQER-RRMP-- 317 (462)
T ss_dssp BHHHHHHHHT-TTCHHHHHHHTTSSCHHHHTTCBHHHHHHHTCT------TCSHHHHHHHTTCEEEEEBTTBC-CCCB--
T ss_pred cHHHHHHHHH-HHhHHHHHHHHHhCChhheeeEEcccccccCCC------cchHHHHHHHcCCEEEEEeCCce-EEEE--
Confidence 9999998843 3332 1 1 12223355789999999873 355666666 6788888883 2221
Q ss_pred cccCCCCCCcccccccCC----CCeeEEEEEEEEccc
Q 014546 259 LRKDNTGYDLKHLFIGSE----GSLGIVTKVSIHTPP 291 (423)
Q Consensus 259 ~~k~~~G~dL~~l~~Gs~----GtlGIIt~~tl~l~p 291 (423)
+..++.|-. ..-.+|+++.|...+
T Consensus 318 ---------~~dF~~g~~~t~L~~~Eii~~i~iP~~~ 345 (462)
T 2w3s_A 318 ---------LEDFFLEYRKQDRRPGEFVESVTLPKSA 345 (462)
T ss_dssp ---------GGGGEEETTEESCCTTCEEEEEEEESCC
T ss_pred ---------HHHhhcccccccCCCCcEEEEEEEecCC
Confidence 122222210 112579999987655
No 31
>1n62_C Carbon monoxide dehydrogenase medium chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: d.87.2.1 d.145.1.3 PDB: 1n5w_C* 1n61_C* 1n60_C* 1n63_C* 1zxi_C*
Probab=97.91 E-value=1.4e-05 Score=77.73 Aligned_cols=147 Identities=17% Similarity=0.178 Sum_probs=91.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCC--ccccCCeEEEEcCC---CCCeEEEeCCCCEEEEEccccH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGS---MNNIITFDKGSGVLVCEAGCIL 191 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~--~~~~~~gvvIdls~---mn~I~~id~~~~~v~VeaGv~~ 191 (423)
+--++.|+|.+|+.++++.. +-+..+.||||++.-. ..-...+++||+++ |+.| +. +++.++++|++++
T Consensus 5 ~~~~~~P~sl~ea~~ll~~~---~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I-~~--~~~~l~IGA~~t~ 78 (288)
T 1n62_C 5 SFDYHRPKSIADAVALLTKL---GEDARPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGI-RE--EGTDVVIGAMTTQ 78 (288)
T ss_dssp CCEEECCSSHHHHHHHHHHH---GGGEEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGSCE-EE--ETTEEEEETTCBH
T ss_pred ceEEECcCCHHHHHHHHHhc---CCCCEEEECchHHHHHHhcCCCCCCEEEECCCChhhcce-Ee--cCCEEEEccCCcH
Confidence 34588999999999998633 3457889999996321 00013478999987 4555 44 4567999999999
Q ss_pred HHHHH--HHHhCCCC-cc------cCCCCCCcceeccccccCCCCCCccccccccceEe-------EEEEEeCCCcEEEc
Q 014546 192 ENLVS--FLDDHGFI-MP------LDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGDVIDM 255 (423)
Q Consensus 192 ~~L~~--~l~~~Gl~-~~------~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~-------~levVl~dG~iv~~ 255 (423)
.+|.+ .+.++ +. +. -+|...+.+||||+|+++.. .+|.+. .+++..++|+ .+.
T Consensus 79 ~~l~~~~~~~~~-~p~L~~a~~~ia~~qiRN~gTiGGnl~~a~p---------~sD~~~~L~Al~A~v~l~~~~G~-r~v 147 (288)
T 1n62_C 79 HALIGSDFLAAK-LPIIRETSLLIADPQIRYMGTIGGNAANGDP---------GNDMPALMQCLGAAYELTGPEGA-RIV 147 (288)
T ss_dssp HHHHHCHHHHHH-CHHHHHHHTTSSCHHHHHHCBHHHHHHSCCT---------TCSHHHHHHHHTCEEEEEETTEE-EEE
T ss_pred HHHhcChHHHHH-HHHHHHHHHHhCCHHHHccccccchhccCCC---------chHHHHHHHHhCcEEEEEeCCcc-EEE
Confidence 99995 44432 21 11 12223345789999998732 344333 5667778884 322
Q ss_pred cCCcccCCCCCCcccccccCC----CCeeEEEEEEEEccc
Q 014546 256 LGTLRKDNTGYDLKHLFIGSE----GSLGIVTKVSIHTPP 291 (423)
Q Consensus 256 ~~~~~k~~~G~dL~~l~~Gs~----GtlGIIt~~tl~l~p 291 (423)
. +.+++.|-. ..--+||++.|...+
T Consensus 148 ~-----------~~df~~g~~~t~l~~~eil~~i~ip~~~ 176 (288)
T 1n62_C 148 A-----------ARDYYQGAYFTAIEPGELLTAIRIPVPP 176 (288)
T ss_dssp E-----------HHHHEEETTEESCCTTCEEEEEEEECCC
T ss_pred E-----------HHHHhcCcccccCCCCCEEEEEEeCCCC
Confidence 1 112222211 112679999997655
No 32
>3nvz_B Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, indole-3-aldehyde, oxidoreductase; HET: FAD MTE I3A; 1.60A {Bos taurus} PDB: 3eub_B* 3etr_B* 3ns1_B* 3nrz_B* 3rca_B* 3sr6_B* 3nvw_B* 3nvv_B* 3nvy_B*
Probab=97.89 E-value=3.7e-05 Score=75.33 Aligned_cols=129 Identities=18% Similarity=0.169 Sum_probs=82.8
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEcccc
Q 014546 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCI 190 (423)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~ 190 (423)
+++.+..++.|+|.+|+.++++. +. ...+.+|||++.-.. -.....++||++++..+-.|..+++.++++|+++
T Consensus 6 ~~g~~~~y~~P~sl~ea~~ll~~---~~-~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt 81 (305)
T 3nvz_B 6 FEGERVTWIQASTLKELLDLKAQ---HP-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACA 81 (305)
T ss_dssp EECSSCEEEECCSHHHHHHHHHH---CT-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCB
T ss_pred ecCCCeEEEccCCHHHHHHHHHh---CC-CCEEEECccHHHHHHhcCCCCCCEEEECCCChhhcceEECCCeEEEccCCc
Confidence 45677889999999999998753 22 246789999974210 0113468999997543333334566799999999
Q ss_pred HHHHHHHHHhC-------------CC----CcccCCCCCCcceeccccccCCCCCCccccccccceEe----EEEEEeCC
Q 014546 191 LENLVSFLDDH-------------GF----IMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL----GLEAVLAN 249 (423)
Q Consensus 191 ~~~L~~~l~~~-------------Gl----~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~----~levVl~d 249 (423)
+.++.+.+.++ .+ ..--.|...+.+||||+|+++.. .+.+.-.++ .+++..++
T Consensus 82 ~~~l~~~~~~~~~~~p~~~~~~~p~L~~a~~~ia~~qiRN~aTiGGNl~~a~p------~sD~~~~L~AldA~v~l~~~~ 155 (305)
T 3nvz_B 82 LSSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFAGKQVKSVASLGGNIITASP------ISDLNPVFMASGTKLTIVSRG 155 (305)
T ss_dssp HHHHHHHHHHHHHHSCGGGCHHHHHHHHHHTTSSCHHHHTTCBHHHHHHHCCT------TCSSHHHHHHHTCEEEEEETT
T ss_pred HHHHHHHHHhhhcccchhhhhhhHHHHHHHHHhCCHHHhCeeechheeCCCCC------chHHHHHHHHcCCEEEEEcCC
Confidence 99999886532 00 01112333456799999998754 233222222 46677788
Q ss_pred Cc
Q 014546 250 GD 251 (423)
Q Consensus 250 G~ 251 (423)
|+
T Consensus 156 G~ 157 (305)
T 3nvz_B 156 TR 157 (305)
T ss_dssp EE
T ss_pred Cc
Confidence 84
No 33
>1t3q_C Quinoline 2-oxidoreductase medium subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: d.87.2.1 d.145.1.3
Probab=97.44 E-value=0.00011 Score=71.31 Aligned_cols=121 Identities=12% Similarity=0.118 Sum_probs=77.1
Q ss_pred ccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHH
Q 014546 117 SKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (423)
Q Consensus 117 p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L 194 (423)
+--++.|+|.+|+.++++. + -...+.+|||++.-.. .......+||++++..+..|..+++.++++|++++.+|
T Consensus 5 ~f~y~~P~sl~ea~~ll~~---~-~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (288)
T 1t3q_C 5 AFSYRAPASLQEVIQVLAD---D-PDARIIAGGQSLLPLLAFRLVYPSCLVDLRNVSELFEISQSAGILSVGAMVTHFRN 80 (288)
T ss_dssp CCEEECCSSHHHHHHHHHH---C-TTCEEESSCTTHHHHHHTTCCCCSEEEECTTCGGGGCEEEETTEEEEETTCBHHHH
T ss_pred CceEECCCCHHHHHHHHhh---C-CCCEEEeCchhHHHHHhcCCCCCCEEEECCCChhhcCeEEcCCEEEEcCCCcHHHH
Confidence 3458899999999999863 2 2356678999963110 00134689999985433233334567999999999999
Q ss_pred HH--HHHhCC-------CCcccCCCCCCcceeccccccCCCCCCccccccccceEe-------EEEEEeCCCc
Q 014546 195 VS--FLDDHG-------FIMPLDLGAKGSCQIGGNVSTNAGGLRLVRYGSLHGNVL-------GLEAVLANGD 251 (423)
Q Consensus 195 ~~--~l~~~G-------l~~~~~pgs~~~~tIGG~va~nagG~~~~~yG~~~d~V~-------~levVl~dG~ 251 (423)
.+ .+.++- ..+. +|...+.+|+||+|++... .+|... .+++..++|+
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ia-s~qiRN~aTiGGNi~~a~p---------~sD~~~~L~Al~A~v~l~~~~g~ 143 (288)
T 1t3q_C 81 KTDPTVAKCVPILPKVLAHVA-HQAVRNRGTLGGSLAHADA---------GAEMPFLMATLGATMYIASSAGV 143 (288)
T ss_dssp HHCHHHHHHCTHHHHHHTTSS-CHHHHTTCBHHHHHHHTCT---------TCHHHHHHHHTTCEEEEEETTEE
T ss_pred hcCHHHHHHHHHHHHHHHHhC-CHHHHcceechhhcccCCC---------cHHHHHHHHHcCcEEEEEcCCce
Confidence 96 343321 1121 2344466799999986421 345444 5677778884
No 34
>3hrd_C Nicotinate dehydrogenase FAD-subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=96.96 E-value=0.00028 Score=68.81 Aligned_cols=103 Identities=17% Similarity=0.170 Sum_probs=66.7
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCC-eEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHHH
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLL-AVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILENL 194 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~i-pv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~L 194 (423)
--++.|+|.+|..++++ +++- ...+.+|||++.-.. .......+||++++..+-.|..+++.++++|++++.++
T Consensus 4 f~y~~P~sl~ea~~ll~---~~~~~~a~~laGGT~l~~~~k~~~~~~~~lIdl~~i~eL~~I~~~~~~l~IGA~vt~~~l 80 (296)
T 3hrd_C 4 FEFFAPKTLEEAKGLLH---QYKDVPPAIIAGGTDLVIEINDRWEKPDVVIDIKKLKELEYIRVEENTIHIGALSTFTQI 80 (296)
T ss_dssp CEEECCSSHHHHHHHHH---HTTTSCCEEESSCTTHHHHHHTTSCCCSEEEECTTCGGGCCEEECSSEEEEETTCBHHHH
T ss_pred eeEeCCCCHHHHHHHHH---hCCCCCeEEEECCcHHHHHhhcCCCCCCeEEEcccChhhcceEEcCCeEEEccCCcHHHH
Confidence 45789999999988875 3332 356779999973210 01134689999986443334445678999999999999
Q ss_pred HHH--HHhC-------CCCcccCCCCCCcceeccccccC
Q 014546 195 VSF--LDDH-------GFIMPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 195 ~~~--l~~~-------Gl~~~~~pgs~~~~tIGG~va~n 224 (423)
.+. +.++ =..+. +|...+.+||||+|++.
T Consensus 81 ~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNi~~a 118 (296)
T 3hrd_C 81 ENHPFIRSHVRALYKAASQVG-SPQIRNLGTIGGNLSTS 118 (296)
T ss_dssp HHCHHHHHHCHHHHHHHHTSS-CHHHHHHCBHHHHHHHT
T ss_pred HhChhhhhHhHHHHHHHHHhC-CHHHhcceehhhhhccC
Confidence 742 1111 01111 23334568999999864
No 35
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1 d.145.1.3 PDB: 1sb3_B*
Probab=95.44 E-value=0.0033 Score=61.99 Aligned_cols=98 Identities=18% Similarity=0.277 Sum_probs=64.1
Q ss_pred cEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCC--ccccCCeEEEEcCCC---CCeEEEeCCCCEEEEEccccHH
Q 014546 118 KLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGG--SVPVFDEVIINMGSM---NNIITFDKGSGVLVCEAGCILE 192 (423)
Q Consensus 118 ~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~--~~~~~~gvvIdls~m---n~I~~id~~~~~v~VeaGv~~~ 192 (423)
--++.|+|.+|..++++ +. .-.+.+|||++... ..-.....+||++++ +.| +.++ ++.++++|++++.
T Consensus 7 f~y~~P~sl~ea~~ll~---~~--~a~~lAGGT~l~~~~k~~~~~p~~lIdi~~i~eL~~I-~~~~-~~~l~IGA~vt~~ 79 (324)
T 1rm6_B 7 FRTHRPATLADAVNALA---AE--ATLPLGAGTDLLPNLRRGLGHPAALVDLTGIDGLATI-STLA-DGSLRIGAGATLE 79 (324)
T ss_dssp CEEECCSSHHHHHHHTT---ST--TEEEESSCTTHHHHHHTTSCCCSEEEECTTSTTTTCE-EECT-TSCEEEETTCBHH
T ss_pred eEEEccCCHHHHHHHHh---CC--CCEEEECchhHHHHHhccCCCCCEEEECCCChhhcce-EECC-CCeEEEccCCcHH
Confidence 34889999999998886 22 36678999987321 000134789999886 555 4332 3368999999999
Q ss_pred HHHHH--HHhC-------CCCcccCCCCCCcceecccccc
Q 014546 193 NLVSF--LDDH-------GFIMPLDLGAKGSCQIGGNVST 223 (423)
Q Consensus 193 ~L~~~--l~~~-------Gl~~~~~pgs~~~~tIGG~va~ 223 (423)
+|.+. +.++ =..+. +|...+.+||||+|++
T Consensus 80 ~l~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNl~~ 118 (324)
T 1rm6_B 80 AIAEHDAIRTTWPALAQAAESVA-GPTHRAAATLGGNLCQ 118 (324)
T ss_dssp HHHHCHHHHHHSHHHHHHHHHSS-CHHHHHHCBHHHHHTC
T ss_pred HHHhChHHHHHHHHHHHHHHHhC-CHHHcceeEeeeeccc
Confidence 99874 2221 01111 3444566899999975
No 36
>3unc_A Xanthine dehydrogenase/oxidase; oxidoreductase; HET: MTE FAD SAL; 1.65A {Bos taurus} PDB: 3una_A* 3uni_A* 1v97_A* 1fo4_A* 1vdv_A* 3am9_A* 3amz_A* 3ax7_A* 3ax9_A* 3bdj_A* 1n5x_A* 2ckj_A* 2e1q_A* 3an1_A* 2e3t_A* 1wyg_A* 3b9j_B* 1fiq_B* 3b9j_A* 1fiq_A*
Probab=95.12 E-value=0.036 Score=64.14 Aligned_cols=107 Identities=18% Similarity=0.175 Sum_probs=69.9
Q ss_pred CCCccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCCCc--cccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccH
Q 014546 114 RGSSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVGGS--VPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCIL 191 (423)
Q Consensus 114 ~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g~~--~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~ 191 (423)
.+.+.-+++|.|.+|+.++++. +. .-.+.+|||++.-.. --....++||++++..+-.|..+++.++++|++++
T Consensus 230 ~~~~~~~~~P~sl~ea~~ll~~---~~-~a~lvaGgT~l~~~~k~~~~~~~~lIdl~~i~EL~~I~~~~~~l~IGA~vtl 305 (1332)
T 3unc_A 230 EGERVTWIQASTLKELLDLKAQ---HP-EAKLVVGNTEIGIEMKFKNQLFPMIICPAWIPELNAVEHGPEGISFGAACAL 305 (1332)
T ss_dssp ECSSCEEEECCSHHHHHHHHHH---CT-TCEECSSCTTHHHHHHHSCCCCSEEEECTTCGGGGCEEECSSEEEEETTCBH
T ss_pred cCCceEEEccCCHHHHHHHHhh---CC-CCEEEEeCcHHHHHhhcCCCCCCeEEEcCCCHHhCceEEeCCEEEEEecChH
Confidence 4456679999999999988763 22 235678899863110 01134579999985533334445667999999999
Q ss_pred HHHHHHHHhC-------C------C-----CcccCCCCCCcceeccccccCC
Q 014546 192 ENLVSFLDDH-------G------F-----IMPLDLGAKGSCQIGGNVSTNA 225 (423)
Q Consensus 192 ~~L~~~l~~~-------G------l-----~~~~~pgs~~~~tIGG~va~na 225 (423)
.+|.+.+.++ . + .+. .+...+.+||||+|++..
T Consensus 306 ~~l~~~l~~~~~~~~~~~~~~~p~L~~a~~~ia-s~qIRN~aTiGGNI~~as 356 (1332)
T 3unc_A 306 SSVEKTLLEAVAKLPTQKTEVFRGVLEQLRWFA-GKQVKSVASLGGNIITAS 356 (1332)
T ss_dssp HHHHHHHHHHHHHSCGGGCHHHHHHHHHHHTSS-CHHHHHHCBHHHHHHHCC
T ss_pred HHHHHHHHHHhhhccccccchhHHHHHHHHHhC-CHHHhceeeccceecccC
Confidence 9999876432 0 0 011 233345579999999754
No 37
>3zyv_A AOH1; oxidoreductase, molybdenum cofactor; HET: MTE FAD; 2.54A {Mus musculus}
Probab=87.07 E-value=0.19 Score=58.22 Aligned_cols=104 Identities=16% Similarity=0.132 Sum_probs=66.2
Q ss_pred CccEEEEcCCHHHHHHHHHHHHhCCCeEEEeCCCccCCC--CccccCCeEEEEcCCCCCeEEEeCCCCEEEEEccccHHH
Q 014546 116 SSKLLLQPRTTNEVSQILKYCNSRLLAVVPQGGNTGLVG--GSVPVFDEVIINMGSMNNIITFDKGSGVLVCEAGCILEN 193 (423)
Q Consensus 116 ~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~~~GgGt~l~g--~~~~~~~gvvIdls~mn~I~~id~~~~~v~VeaGv~~~~ 193 (423)
.-..++.|.|.+|+.++...- -+.+ +..|||.+.- ......-.++||+.+...+..+...+..++++|+|++.+
T Consensus 239 ~~~~w~~P~tl~el~~l~~~~--p~a~--lvaGnT~~gl~~~~~~~~~~~~I~~~~v~EL~~i~~~~~~l~IGA~vtls~ 314 (1335)
T 3zyv_A 239 ERTTWIAPGTLNDLLELKMKH--PSAP--LVIGNTYLGLHMKFTDVSYPIIISPARILELFVVTNTKQGLTLGTGLSLTQ 314 (1335)
T ss_dssp SSCEEEECSSHHHHHHHHHHC--TTSC--BCSSCTTHHHHHC--CCCCSEEECCTTCGGGSCEECCTTEEEEETTCBHHH
T ss_pred CCceEecCCCHHHHHHHHHHC--CCCe--EEEecccceeeEeecCCCCCeEEEcCcchhHheEEecCCEEEEcccCcHHH
Confidence 335688999999999886522 2223 3567777410 011112358899888555545566677899999999999
Q ss_pred HHHHHHhCCCC------------------cccCCCCCCcceeccccccC
Q 014546 194 LVSFLDDHGFI------------------MPLDLGAKGSCQIGGNVSTN 224 (423)
Q Consensus 194 L~~~l~~~Gl~------------------~~~~pgs~~~~tIGG~va~n 224 (423)
+.+.|.+.--. |. .+...+.+||||+|++.
T Consensus 315 ~~~~l~~~~~~~~~~~~~~~~~l~~~l~~fA-s~qIRN~aTigGNI~~a 362 (1335)
T 3zyv_A 315 VKNVLSDVVSRLPKEKTQIYCALLKQLKTLA-GQQIRNVASLGGHIISR 362 (1335)
T ss_dssp HHHHHHHHHTTSCTTTCTTHHHHHHHHTTSS-CHHHHHHCBHHHHHHTC
T ss_pred HHHHHHHHHhhcchhhhhhHHHHHHHHHHhc-chhhcCcccccCceecc
Confidence 99888642111 11 12334568999999864
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=36.56 E-value=62 Score=24.67 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=34.7
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|.++.+...+.-.....+++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~F----~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 76 (105)
T 2dnh_A 30 EDVLRLF----QPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHAL 76 (105)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHH
Confidence 3566665 3467788888877664445667899999999998888775
No 39
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=36.36 E-value=59 Score=24.93 Aligned_cols=46 Identities=20% Similarity=0.286 Sum_probs=34.8
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+
T Consensus 45 ~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 90 (107)
T 3ulh_A 45 DIQELFA----EFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQY 90 (107)
T ss_dssp HHHHHHH----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 5666553 467788888877774445667899999999999988875
No 40
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.16 E-value=67 Score=24.26 Aligned_cols=47 Identities=13% Similarity=0.177 Sum_probs=34.4
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+|. .+|-|.++.+...+.-.....+++.|.+.+++.+|+..+
T Consensus 32 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 78 (100)
T 2do4_A 32 EELEEICK----AHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKM 78 (100)
T ss_dssp HHHHHHHT----TTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHh
Confidence 35666653 467788888877664445567899999999998888775
No 41
>1xty_A PTH, peptidyl-tRNA hydrolase; mixed beta sheet; 1.80A {Pyrococcus abyssi}
Probab=34.53 E-value=72 Score=26.13 Aligned_cols=45 Identities=13% Similarity=0.260 Sum_probs=35.7
Q ss_pred HHhhcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE-EEeCCC
Q 014546 103 LAANEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (423)
Q Consensus 103 ~~y~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~~GgG 149 (423)
..+...| ...+.|..|+...+++|+.++.+.|.+.|+|. .++=+|
T Consensus 43 ~~~~~~W--~~~g~~KiVlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 88 (120)
T 1xty_A 43 KEWLNEW--LHQGQPKIIVKVNSLDEIISRAKKAETMNLPFSIIEDAG 88 (120)
T ss_dssp HHHHHHH--HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred HHHHHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 4455555 45788999999999999999999999999996 344443
No 42
>1rzw_A Protein AF2095(GR4); beta-sheet of 4 parallel, anti-parallel beta-strands and 3 alpha-helices, structural genomics, PSI; NMR {Archaeoglobus fulgidus} SCOP: c.131.1.1 PDB: 3erj_A
Probab=34.00 E-value=58 Score=26.99 Aligned_cols=42 Identities=21% Similarity=0.316 Sum_probs=33.8
Q ss_pred hcccccccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE-EEeCCC
Q 014546 106 NEDWMRKYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (423)
Q Consensus 106 ~~d~~~~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~~GgG 149 (423)
...| ...+.+..|+...+++|+.++.+.|.+.|+|. .++-+|
T Consensus 40 l~~W--~~~G~~Kvvlk~~~e~el~~L~~~a~~~gl~~~~I~DAG 82 (123)
T 1rzw_A 40 RRKW--LDEGQKKVVLKVKSLEELLGIKHKAESLGLVTGLVQDAG 82 (123)
T ss_dssp HHHT--GGGCSSEEEEECSCHHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred HHHH--HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEECCC
Confidence 3445 34678999999999999999999999999996 455554
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=33.36 E-value=59 Score=24.22 Aligned_cols=47 Identities=23% Similarity=0.198 Sum_probs=34.9
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+++..+
T Consensus 31 ~~l~~~F~----~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 77 (95)
T 2ywk_A 31 EILYELFL----QAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALL 77 (95)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHh
Confidence 35666653 467788888877665445667899999999998888765
No 44
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=31.77 E-value=78 Score=24.91 Aligned_cols=47 Identities=19% Similarity=0.209 Sum_probs=35.6
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccC-CceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|.++.+-..+. -.....+++.|.+.++|.+|+..+
T Consensus 21 ~~L~~~F----~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~l 68 (110)
T 3s8s_A 21 TFLKDMC----RKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNL 68 (110)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3566666 4578899998877665 345567889999999999888876
No 45
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.44 E-value=80 Score=24.42 Aligned_cols=47 Identities=15% Similarity=0.202 Sum_probs=35.0
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|.++.+...+.-.....+++.|.+.+++.+++..+
T Consensus 30 ~~l~~~f----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 76 (114)
T 2do0_A 30 KKLKEVF----SMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMF 76 (114)
T ss_dssp HHHHHHH----TTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHh
Confidence 3566665 3467788888876665445667899999999999988876
No 46
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=29.27 E-value=75 Score=24.83 Aligned_cols=40 Identities=10% Similarity=0.081 Sum_probs=30.3
Q ss_pred CCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 277 GSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 277 GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+.+|-|+++.+...+.......+++.|.+.++|.+|+..+
T Consensus 49 ~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~l 88 (104)
T 1jmt_A 49 EKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDL 88 (104)
T ss_dssp HHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHH
T ss_pred ccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHH
Confidence 3567899988854443444677889999999999988876
No 47
>1wn2_A Peptidyl-tRNA hydrolase; riken structural genomics/proteomics initiative, structural genomics; 1.20A {Pyrococcus horikoshii} PDB: 2d3k_A
Probab=28.53 E-value=63 Score=26.58 Aligned_cols=38 Identities=11% Similarity=0.107 Sum_probs=31.7
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeEE-EeCCC
Q 014546 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAVV-PQGGN 149 (423)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv~-~~GgG 149 (423)
...+.|..|+...+++|+.++.+.|.+.|+|.. ++=.|
T Consensus 51 ~~~g~~Kvvlk~~~e~el~~l~~~a~~~gl~~~~i~DAG 89 (121)
T 1wn2_A 51 FREGQKKVVVKVESEEELFKLKAEAEKLGLPNALIRDAG 89 (121)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHTTCCEEEEECTT
T ss_pred HHCCCcEEEEecCCHHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 356889999999999999999999999999963 44443
No 48
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.03 E-value=1.1e+02 Score=23.17 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=33.1
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|.++.+... .......+++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~F----~~~G~i~~v~i~~~-~g~~~g~afV~f~~~~~A~~A~~~l 75 (103)
T 2d9p_A 30 ERLRKAF----SPFGTITSAKVMME-GGRSKGFGFVCFSSPEEATKAVTEM 75 (103)
T ss_dssp HHHHHTT----TTTSCEEEEEEEEC-SSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEcC-CCCcCEEEEEEECCHHHHHHHHHHh
Confidence 3555555 34677888887655 3345567899999999999888875
No 49
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.56 E-value=1.2e+02 Score=23.34 Aligned_cols=47 Identities=15% Similarity=0.267 Sum_probs=33.9
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|..+.+...+.......+++.|.+.+++.+++..+
T Consensus 40 ~~l~~~F----~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 86 (114)
T 1x5o_A 40 QELENML----KPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHF 86 (114)
T ss_dssp HHHHHTT----TTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHh
Confidence 3555555 3467788888876664445567889999999998888765
No 50
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=25.38 E-value=1.2e+02 Score=22.37 Aligned_cols=46 Identities=24% Similarity=0.315 Sum_probs=33.5
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCC-ceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+|. .+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 31 ~l~~~f~----~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 77 (95)
T 2cqc_A 31 DLREVFS----KYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERA 77 (95)
T ss_dssp HHHHHHH----TTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHh
Confidence 5666653 3677888888766553 34567889999999999888776
No 51
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=25.09 E-value=99 Score=24.21 Aligned_cols=62 Identities=19% Similarity=0.155 Sum_probs=41.4
Q ss_pred CcccccccCCCCeeEEEEEEEEcccC--CceeeEEEEEcCCHHHHHHHHHHHHHH-cCCCceEEEeeCH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPK--LSSVNLAFLACKDYFSCQKLLREAKRK-LGEILSAFEFLDN 332 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~--p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~E~~d~ 332 (423)
||...| +.+|-|+++.+-..|. +.....+++.|.+.++|.+|+..+-.. .+..+-.+++.+.
T Consensus 29 dl~~~f----~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 29 ETKEEC----EKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp HHHHHG----GGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred HHHHHH----HhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 455544 4678899998865543 234567889999999999998887321 2334556677665
No 52
>1yht_A DSPB; beta barrel, hydrolase; 2.00A {Aggregatibacter actinomycetemcomitans} SCOP: c.1.8.6
Probab=24.72 E-value=46 Score=32.66 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=21.5
Q ss_pred CCHHHHHHHHHHHHhCCCeEEEe
Q 014546 124 RTTNEVSQILKYCNSRLLAVVPQ 146 (423)
Q Consensus 124 ~s~eeV~~iv~~a~~~~ipv~~~ 146 (423)
-|.+|+.+|+++|++++|.|+|-
T Consensus 92 YT~~di~eiv~YA~~rgI~VIPE 114 (367)
T 1yht_A 92 LSYRQLDDIKAYAKAKGIELIPE 114 (367)
T ss_dssp BCHHHHHHHHHHHHHTTCEEEEE
T ss_pred cCHHHHHHHHHHHHHcCCEEEEe
Confidence 58999999999999999999985
No 53
>1rlk_A Hypothetical protein TA0108; structural genomics, conserved hypothetical protein, PSI, PR structure initiative; HET: SO4; 1.95A {Thermoplasma acidophilum} SCOP: c.131.1.1
Probab=23.53 E-value=96 Score=25.22 Aligned_cols=38 Identities=16% Similarity=0.239 Sum_probs=31.8
Q ss_pred ccCCCccEEEEcCCHHHHHHHHHHHHhCCCeE-EEeCCC
Q 014546 112 KYRGSSKLLLQPRTTNEVSQILKYCNSRLLAV-VPQGGN 149 (423)
Q Consensus 112 ~~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv-~~~GgG 149 (423)
...+.|..|+...+++|+.++.+.|.+.|+|. .++-.|
T Consensus 47 ~~~g~~kiVlk~~~e~~l~~l~~~a~~~gl~~~~v~DAG 85 (117)
T 1rlk_A 47 YDEGQRKIVVKVNDLDEIMEIKRMADSMGIVNEIVQDRG 85 (117)
T ss_dssp HHTTCCEEEEEESSHHHHHHHHHHHHHHTCCEEEEECCC
T ss_pred HHCCCeEEEEecCCHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35688999999999999999999999999996 444444
No 54
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.14 E-value=94 Score=23.52 Aligned_cols=46 Identities=15% Similarity=0.140 Sum_probs=32.5
Q ss_pred CcccccccCCCC-eeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGS-LGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~Gt-lGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+|. . +|-|.++.+...+.-.....+++.|.+.+++.+|+..+
T Consensus 25 ~l~~~F~----~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l 71 (104)
T 2dhg_A 25 MLYEFFV----KVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTEC 71 (104)
T ss_dssp HHHHHHH----HHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHT
T ss_pred HHHHHHH----HhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHc
Confidence 5555553 3 55678888766653345567889999999998888765
No 55
>2r2z_A Hemolysin; APC85144, enterococcus faecalis V583, STRU initiative, midwest center for structural genomics, MCSG; 1.20A {Enterococcus faecalis} SCOP: d.145.1.4
Probab=22.84 E-value=85 Score=24.02 Aligned_cols=40 Identities=8% Similarity=0.184 Sum_probs=30.2
Q ss_pred CCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCC
Q 014546 180 SGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAG 226 (423)
Q Consensus 180 ~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nag 226 (423)
++...|.+.+.+.+|++.+ |+.+|- ...-|+||++....|
T Consensus 15 dg~~~v~G~~~l~dl~~~l---~~~l~~----~~~~TlgG~i~~~lg 54 (93)
T 2r2z_A 15 DNEYLVQGRMLIDEFNEVF---ETDLHM----SDVDTMAGYLITALG 54 (93)
T ss_dssp TTEEEEETTSBHHHHHHHH---TCCCCC----TTCCBHHHHHHHHHS
T ss_pred CCEEEEECCCCHHHHHHHh---CCCCCC----CCcccHHHHHHHHhC
Confidence 4568899999999999997 455652 235689999986544
No 56
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=22.17 E-value=1.6e+02 Score=21.25 Aligned_cols=47 Identities=9% Similarity=0.198 Sum_probs=33.3
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccC-CceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+|. .+|-|.++.+...+. ......+++.|.+.+++.+++..+
T Consensus 21 ~~l~~~F~----~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l 68 (87)
T 3bs9_A 21 AAIAAAFA----PFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 68 (87)
T ss_dssp HHHHHHHG----GGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHc
Confidence 35666653 456688888766543 334567889999999999988775
No 57
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=21.56 E-value=1.3e+02 Score=24.37 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=34.7
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+++..+
T Consensus 16 ~l~~~f~----~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l 61 (166)
T 3md3_A 16 ILKQYFQ----VGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTL 61 (166)
T ss_dssp HHHHHHG----GGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHH----hcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHc
Confidence 5656553 456788888877766566678899999999999998776
No 58
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=21.53 E-value=1.5e+02 Score=22.58 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=40.4
Q ss_pred CCCcEEEccCCcccCCCCCCcccccccCCCCeeEEEEEEEEcccCC-ceeeEEEEEcCCHHHHHHHHHHH
Q 014546 248 ANGDVIDMLGTLRKDNTGYDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 248 ~dG~iv~~~~~~~k~~~G~dL~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|+-+-++. +..+.+.-+|..+|. .+|-|.++.+-..+.. .....+++.|.+.++|.+|+..+
T Consensus 17 ~~gt~lfV~n-Lp~~~te~~L~~~F~----~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~l 81 (99)
T 4fxv_A 17 FQGTNLIVNY-LPQNMTQDELRSLFS----SIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTL 81 (99)
T ss_dssp CCCSEEEEES-CCTTCCHHHHHHHHH----TTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCCEEEEeC-CCCCCCHHHHHHHHH----hcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHh
Confidence 4454444332 223333346766663 4677888887655442 34457889999999999988775
No 59
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=21.41 E-value=1.1e+02 Score=24.60 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCeeEEEEEEEEcccC-----CceeeEEEEEcCCHHHHHHHHHHHHHH-cCCCceEEEeeCHHH
Q 014546 277 GSLGIVTKVSIHTPPK-----LSSVNLAFLACKDYFSCQKLLREAKRK-LGEILSAFEFLDNQS 334 (423)
Q Consensus 277 GtlGIIt~~tl~l~p~-----p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~a~E~~d~~~ 334 (423)
+.+|-|+++.+-..+. +.....+++.|.+.++|.+|+..+-.. .+..+-.++|.+...
T Consensus 47 ~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~~~ 110 (118)
T 3ue2_A 47 GKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQER 110 (118)
T ss_dssp TTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHHH
T ss_pred hccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcChHh
Confidence 5688899998865442 234466789999999999999887321 234456678877643
No 60
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=21.15 E-value=1.6e+02 Score=21.01 Aligned_cols=46 Identities=13% Similarity=0.099 Sum_probs=32.6
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCC-ceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 17 ~l~~~f----~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l 63 (83)
T 3md1_A 17 TLRNAF----KDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSM 63 (83)
T ss_dssp HHHHHH----TTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHH----HhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHh
Confidence 555555 34566888887665443 34567889999999998888765
No 61
>2zv3_A PTH, peptidyl-tRNA hydrolase; cytoplasm, structural genomics, NPPSFA; 2.10A {Methanocaldococcus jannaschii}
Probab=21.12 E-value=97 Score=25.11 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=28.6
Q ss_pred cCCCccEEEEcCCHHHHHHHHHHHHhCCCeE
Q 014546 113 YRGSSKLLLQPRTTNEVSQILKYCNSRLLAV 143 (423)
Q Consensus 113 ~~~~p~~Vv~P~s~eeV~~iv~~a~~~~ipv 143 (423)
..+.|..|+...+++|+.++.+.|.+.|+|.
T Consensus 46 ~~g~~kivlk~~~e~~l~~l~~~a~~~gl~~ 76 (115)
T 2zv3_A 46 REGQKKVVVKVNSEKELIDIYNKARSEGLPC 76 (115)
T ss_dssp HTTCCEEEEEESSHHHHHHHHHHHHHHTCCE
T ss_pred HCCCeEEEEecCCHHHHHHHHHHHHHcCCCE
Confidence 5788999999999999999999999999986
No 62
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=20.87 E-value=1.4e+02 Score=24.38 Aligned_cols=47 Identities=21% Similarity=0.308 Sum_probs=34.5
Q ss_pred CcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREAK 317 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~~ 317 (423)
+|..+|. .+|-|.++.+...+.......+++.|.+.+++.+|+..+.
T Consensus 111 ~l~~~F~----~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~ 157 (175)
T 3nmr_A 111 DIRVMFS----SFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 157 (175)
T ss_dssp HHHHHHG----GGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHT
T ss_pred HHHHHHH----hCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhc
Confidence 5666553 4566888888666554456678999999999999988763
No 63
>3lae_A UPF0053 protein HI0107; APC85784.2, conserved protein, haemophilus influenzae RD KW20, structural genomics, PSI-2; HET: MSE; 1.45A {Haemophilus influenzae} SCOP: d.145.1.4 PDB: 2o1r_A*
Probab=20.74 E-value=1.4e+02 Score=22.26 Aligned_cols=42 Identities=10% Similarity=0.250 Sum_probs=30.8
Q ss_pred CCCEEEEEccccHHHHHHHHHhCCCCcccCCCCCCcceeccccccCCCC
Q 014546 179 GSGVLVCEAGCILENLVSFLDDHGFIMPLDLGAKGSCQIGGNVSTNAGG 227 (423)
Q Consensus 179 ~~~~v~VeaGv~~~~L~~~l~~~Gl~~~~~pgs~~~~tIGG~va~nagG 227 (423)
.++...|.+.+.+.++++.+ |+.+|. ...-|+||++....|.
T Consensus 7 ~dg~~~v~g~~~l~dl~~~l---~~~l~~----~~~~Tl~G~i~~~lg~ 48 (81)
T 3lae_A 7 SDGSMIIDGSANLRDLNKMF---NWELDT----EDARTFNGLILEHLEE 48 (81)
T ss_dssp TTSCEEEETTCBHHHHHHHH---CCCCCC----SSCSBHHHHHHHHCSS
T ss_pred CCCEEEEEeeCCHHHHHHHh---CCCCCC----CCCccHHHHHHHHhCC
Confidence 34567899999999999986 455652 2446899999876543
No 64
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=20.71 E-value=1.7e+02 Score=22.12 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=33.2
Q ss_pred CcccccccCCCCeeEEEEEEEEcccC-CceeeEEEEEcCCHHHHHHHHHHH
Q 014546 267 DLKHLFIGSEGSLGIVTKVSIHTPPK-LSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 267 dL~~l~~Gs~GtlGIIt~~tl~l~p~-p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
+|..+| ..+|-|.++.+...+. ......+++.|.+.+++.+|+..+
T Consensus 39 ~l~~~f----~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 85 (106)
T 1p27_B 39 DIHDKF----AEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGL 85 (106)
T ss_dssp HHHHHH----GGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHH----hccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 565555 3467788888766554 334567889999999998888775
No 65
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.48 E-value=1.5e+02 Score=21.79 Aligned_cols=47 Identities=15% Similarity=0.287 Sum_probs=33.2
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCC-ceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKL-SSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p-~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+| ..+|-|.++.+...+.. .....+++.|.+.+++.+++..+
T Consensus 20 ~~l~~~f----~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l 67 (95)
T 2dnz_A 20 DMLRGIF----EPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 67 (95)
T ss_dssp HHHHHHH----TTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHH----HhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHh
Confidence 3566665 34677888887665542 23457889999999999888875
No 66
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=20.11 E-value=1.3e+02 Score=22.74 Aligned_cols=46 Identities=17% Similarity=0.267 Sum_probs=32.8
Q ss_pred CCcccccccCCCCeeEEEEEEEEcccCCceeeEEEEEcCCHHHHHHHHHHH
Q 014546 266 YDLKHLFIGSEGSLGIVTKVSIHTPPKLSSVNLAFLACKDYFSCQKLLREA 316 (423)
Q Consensus 266 ~dL~~l~~Gs~GtlGIIt~~tl~l~p~p~~~~~~~~~~~~~~~~~~~~~~~ 316 (423)
.+|..+|. .+|-|.++.+...+.. ....+++.|.+.+++.+|+..+
T Consensus 30 ~~l~~~f~----~~G~v~~v~i~~~~~~-~~g~afV~f~~~~~a~~A~~~l 75 (103)
T 2cq3_A 30 PDLRQMFG----QFGKILDVEIIFNERG-SKGFGFVTFENSADADRAREKL 75 (103)
T ss_dssp HHHHHHGG----GTSCEEEEEEECCTTT-TCCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHH----hcCCeEEEEEEecCCC-CcEEEEEEECCHHHHHHHHHHh
Confidence 35666653 4677888887665443 4557889999999999888775
Done!