BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014547
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
pdb|2QMX|A Chain A, The Crystal Structure Of L-Phe Inhibited Prephenate
Dehydratase From Chlorobium Tepidum Tls
Length = 283
Score = 209 bits (531), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 124/289 (42%), Positives = 160/289 (55%), Gaps = 27/289 (9%)
Query: 130 VAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRN 189
+AYQG PGAYSE AA + E +PC+ F+ F AV AD AV+P+ENSLGGSIH+N
Sbjct: 9 IAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQN 65
Query: 190 YDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVAR 249
YDLLLR + I+ E + V HCLL LPG E T+ SHPQAL QC H +
Sbjct: 66 YDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQC-HNFFATHPQIRA 124
Query: 250 EAVDDTAGAAEYIAANDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLARE-- 307
EA DTAG+A+ +A + + ELYG+ +L++ + D+ N+TRF +A E
Sbjct: 125 EAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIAHENN 184
Query: 308 ------PIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRL 361
+ P R KTSIVFA LF+ L+ FA R I LTKIESRP R
Sbjct: 185 PDISHLKVRPDVARQ-KTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRK----- 238
Query: 362 VDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSY 410
K FEY+FY DF + NAL ++EF + ++VLGSY
Sbjct: 239 ---------KAFEYLFYADFIGHREDQNVHNALENLREFATXVKVLGSY 278
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
pdb|3MWB|B Chain B, The Crystal Structure Of Prephenate Dehydratase In Complex
With L-Phe From Arthrobacter Aurescens To 2.0a
Length = 313
Score = 101 bits (252), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 81/291 (27%), Positives = 130/291 (44%), Gaps = 21/291 (7%)
Query: 126 SQLRVAYQGVPGAYSEAAAGKAYPNCEA--IPCDQFEVAFQAVELWIADRAVLPVENSLG 183
S + + G G ++EAA + +A IPC A + V AD A +P+ENS+
Sbjct: 5 SAVTYTFLGPQGTFTEAALXQVPGAADATRIPCTNVNTALERVRAGEADAAXVPIENSVE 64
Query: 184 GSIHRNYDLLLR-HRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTK 242
G + D + L I+ E +P+ L+A PGV + R+ +H A +QC + +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 243 LGLNVAREAVDDTAGAAEYIAANDL-RDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRF 301
N TA +A + +D + E G+ VL + I D+ VTRF
Sbjct: 125 HLPNADYVPGSSTAASAXGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184
Query: 302 VMLAREPIIP-RTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIR 360
++++R +P RT T +V + L ++L FA R ++L++IESRP
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALXEILDQFASRGVNLSRIESRP------- 237
Query: 361 LVDDANVGTAKHF-EYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSY 410
T ++ Y F ID + + R +ALA + + R LGSY
Sbjct: 238 --------TGQYLGHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSY 280
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
pdb|2QMW|B Chain B, The Crystal Structure Of The Prephenate Dehydratase (Pdt)
From Staphylococcus Aureus Subsp. Aureus Mu50
Length = 267
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 102/232 (43%), Gaps = 11/232 (4%)
Query: 129 RVAYQGVPGAYSEAAAGKAYPNCEAI---PCDQFEVAFQAVELWIADRAVLPVENSLGGS 185
++ Y G G +S A + + EA + FEV +AV V+P+ENS+ G+
Sbjct: 5 QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEV-IKAVADDDTSIGVVPIENSIEGT 63
Query: 186 IHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGL 245
I+ D L + + GE++L ++ L + +V S A+SQ + + +
Sbjct: 64 INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF 123
Query: 246 NVAREAVDDTAGAAEYIAANDLRDTXXXXXXXXXELYGMQVLEDGIQDDSSNVTRFVMLA 305
+ + VD T + I E YG ++ I+D NVTRF+++
Sbjct: 124 D--YDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIK 177
Query: 306 REPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNR 357
+ + I HDK +L VL+ FA NI+L+ IESRP + +
Sbjct: 178 NQQQFDQNATSLXFLITPXHDK-PGLLASVLNTFALFNINLSWIESRPLKTQ 228
>pdb|3LUY|A Chain A, Putative Chorismate Mutase From Bifidobacterium
Adolescentis
Length = 329
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 94/249 (37%), Gaps = 32/249 (12%)
Query: 174 AVLPVENSLGGSIHRNYDLLLRHRLHIVG--EVQLPVHHCLLALPGVRKEYLTRVISHPQ 231
++ EN++ G + N D L+ + +VG V + V G +HP
Sbjct: 60 GIVAWENNVEGYVVPNLDALIDAK-DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPH 118
Query: 232 ALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTXXXXXXXXXELYGMQVLEDGI 291
L+QC+ + + L+ + A + A + I ELY + + I
Sbjct: 119 GLAQCKRFIAEHRLST-QPATSNAAACRDLIPGE-----IAFGPAICGELYDITRIGTAI 172
Query: 292 QDDSSNVTRFVML------AREPIIPRTDRPFKTSIVFAHD---KGTSVLFKVLSAFAFR 342
QD T F++L AR PR + + V G VL +L F
Sbjct: 173 QDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDA 232
Query: 343 NISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTS 402
++ T SRP + R GT Y F + +A+ E R ++AL E+ E
Sbjct: 233 GLNXTSFISRPIKGR---------TGT-----YSFIVTLDAAPWEERFRDALVEIAEHGD 278
Query: 403 FLRVLGSYP 411
+ + L YP
Sbjct: 279 WAKTLAVYP 287
>pdb|2B5N|A Chain A, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|B Chain B, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|C Chain C, Crystal Structure Of The Ddb1 Bpb Domain
pdb|2B5N|D Chain D, Crystal Structure Of The Ddb1 Bpb Domain
Length = 323
Score = 32.0 bits (71), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 228 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 282
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 283 SNVNLKEV 290
>pdb|1PHZ|A Chain A, Structure Of Phosphorylated Phenylalanine Hydroxylase
pdb|2PHM|A Chain A, Structure Of Phenylalanine Hydroxylase Dephosphorylated
Length = 429
Score = 31.6 bits (70), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 320 SIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHR 355
S++F+ + L KVL F +I+LT IESRP R
Sbjct: 36 SLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSR 71
>pdb|3EI4|A Chain A, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|C Chain C, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|E Chain E, Structure Of The Hsddb1-Hsddb2 Complex
Length = 1158
Score = 31.6 bits (70), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 632 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 686
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 687 SNVNLKEV 694
>pdb|3E0C|A Chain A, Crystal Structure Of Dna Damage-Binding Protein 1(Ddb1)
Length = 1140
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 614 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 668
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 669 SNVNLKEV 676
>pdb|2B5L|A Chain A, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5L|B Chain B, Crystal Structure Of Ddb1 In Complex With Simian Virus 5 V
Protein
pdb|2B5M|A Chain A, Crystal Structure Of Ddb1
pdb|2HYE|A Chain A, Crystal Structure Of The Ddb1-cul4a-rbx1-sv5v Complex
Length = 1140
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 614 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 668
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 669 SNVNLKEV 676
>pdb|4E54|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
pdb|4E5Z|A Chain A, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 1150
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 624 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 678
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 679 SNVNLKEV 686
>pdb|3I7H|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Hbx
pdb|3I7K|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Whx
pdb|3I7L|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Ddb2
pdb|3I7N|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdtc1
pdb|3I7O|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Iqwd1
pdb|3I7P|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr40a
pdb|3I89|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr22
pdb|3I8C|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr21a
pdb|3I8E|A Chain A, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
pdb|3I8E|B Chain B, Crystal Structure Of Ddb1 In Complex With The H-Box Motif
Of Wdr42a
Length = 1143
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 617 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 671
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 672 SNVNLKEV 679
>pdb|3EI1|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|A Chain A, Structure Of The Hsddb1-Drddb2 Complex
Length = 1158
Score = 31.6 bits (70), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 632 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 686
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 687 SNVNLKEV 694
>pdb|4A0L|A Chain A, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|C Chain C, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1144
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 618 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 672
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 673 SNVNLKEV 680
>pdb|4A11|A Chain A, Structure Of The Hsddb1-Hscsa Complex
pdb|4A0K|C Chain C, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 1159
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 633 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 687
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 688 SNVNLKEV 695
>pdb|4A0B|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|C Chain C, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
Length = 1159
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 633 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 687
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 688 SNVNLKEV 695
>pdb|4A0A|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
Length = 1159
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 633 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 687
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 688 SNVNLKEV 695
>pdb|4A08|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|A Chain A, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
Length = 1159
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 282 YGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAF 341
+G+ + E G+ D VT L +P + RT R T+ VFA +V++ F
Sbjct: 633 FGLNI-ETGLLSDRKKVT----LGTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNHKLVF 687
Query: 342 RNISLTKI 349
N++L ++
Sbjct: 688 SNVNLKEV 695
>pdb|1COY|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
pdb|3COX|A Chain A, Crystal Structure Of Cholesterol Oxidase Complexed With A
Steroid Substrate. Implications For Fad Dependent
Alcohol Oxidases
Length = 507
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 10/91 (10%)
Query: 109 PQKPLTITDLSPAPMHGS-------QLRVAYQGVPGAYSEAAAGKAYPNCEA-IPCDQFE 160
P + L D PA + GS LR+ G+P E P + I C
Sbjct: 2 PSRTLADGDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEMGRSWDTPGSDGKIFCGMLN 61
Query: 161 VAFQAVELWIADRAVLPVENSLGGSIHRNYD 191
++ +W+AD+ PV N +G I+++ D
Sbjct: 62 PDKRS--MWLADKTDQPVSNFMGFGINKSID 90
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,412,699
Number of Sequences: 62578
Number of extensions: 425919
Number of successful extensions: 748
Number of sequences better than 100.0: 18
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 734
Number of HSP's gapped (non-prelim): 18
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)