Query 014547
Match_columns 423
No_of_seqs 225 out of 1165
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 13:33:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qmx_A Prephenate dehydratase; 100.0 2.2E-88 7.6E-93 665.9 33.7 268 127-413 6-281 (283)
2 3mwb_A Prephenate dehydratase; 100.0 9.5E-88 3.3E-92 669.4 32.9 274 127-414 6-284 (313)
3 2qmw_A PDT, prephenate dehydra 100.0 4.1E-86 1.4E-90 645.1 29.8 260 127-411 3-267 (267)
4 3luy_A Probable chorismate mut 100.0 1.2E-83 4.1E-88 643.7 26.8 268 126-414 5-290 (329)
5 1phz_A Protein (phenylalanine 99.8 1.7E-21 5.9E-26 199.8 10.7 92 314-420 30-123 (429)
6 2ko1_A CTR148A, GTP pyrophosph 96.8 0.0099 3.4E-07 46.2 9.8 67 317-401 4-70 (88)
7 1zpv_A ACT domain protein; str 96.3 0.027 9.1E-07 44.4 9.6 38 318-355 5-42 (91)
8 2f1f_A Acetolactate synthase i 96.1 0.037 1.3E-06 50.0 10.5 71 318-405 3-73 (164)
9 2pc6_A Probable acetolactate s 95.7 0.052 1.8E-06 49.1 9.8 72 318-406 4-75 (165)
10 2fgc_A Acetolactate synthase, 95.5 0.07 2.4E-06 49.6 9.8 72 318-406 29-100 (193)
11 1wdn_A GLNBP, glutamine bindin 95.0 0.67 2.3E-05 39.9 14.4 94 128-243 110-207 (226)
12 3h7m_A Sensor protein; histidi 93.2 1.1 3.8E-05 38.8 12.0 98 128-243 118-215 (234)
13 3mpk_A Virulence sensor protei 93.1 0.55 1.9E-05 42.7 10.3 98 128-243 140-238 (267)
14 2jhe_A Transcription regulator 92.8 0.62 2.1E-05 39.9 9.6 62 321-403 3-64 (190)
15 3kzg_A Arginine 3RD transport 92.8 0.86 3E-05 40.1 10.8 94 128-243 111-215 (237)
16 3k4u_A Binding component of AB 92.7 0.57 1.9E-05 41.6 9.6 99 127-243 115-213 (245)
17 1y7p_A Hypothetical protein AF 92.3 0.26 8.7E-06 46.8 6.9 67 318-400 4-70 (223)
18 4f3p_A Glutamine-binding perip 92.3 0.81 2.8E-05 40.8 10.0 79 128-217 131-213 (249)
19 1xt8_A Putative amino-acid tra 92.0 1.9 6.4E-05 39.6 12.5 94 128-243 154-250 (292)
20 2f06_A Conserved hypothetical 91.4 0.6 2.1E-05 39.8 7.7 60 319-401 72-132 (144)
21 3del_B Arginine binding protei 91.3 2.3 7.9E-05 37.2 11.8 93 128-243 119-217 (242)
22 4dz1_A DALS D-alanine transpor 90.0 1.3 4.4E-05 40.0 9.1 79 128-217 138-225 (259)
23 1u8s_A Glycine cleavage system 89.6 5.2 0.00018 35.6 12.7 78 318-406 93-175 (192)
24 2f06_A Conserved hypothetical 89.4 1.5 5E-05 37.3 8.5 35 319-353 7-41 (144)
25 3qax_A Probable ABC transporte 88.4 4.9 0.00017 35.5 11.6 93 128-243 140-238 (268)
26 3i6v_A Periplasmic His/Glu/Gln 88.3 5.4 0.00019 35.1 11.8 91 129-243 108-202 (232)
27 2yjp_A Putative ABC transporte 88.1 2.5 8.5E-05 39.0 9.8 48 128-177 165-212 (291)
28 2qpq_A Protein BUG27; alpha/be 87.1 4.2 0.00014 39.2 11.0 127 127-265 130-285 (301)
29 3mpk_A Virulence sensor protei 86.7 6.2 0.00021 35.6 11.4 115 150-280 72-192 (267)
30 3ksx_A Nitrate transport prote 86.5 20 0.0007 33.4 15.4 132 126-265 29-177 (324)
31 3un6_A Hypothetical protein sa 86.0 19 0.00063 34.1 14.9 138 126-275 52-209 (341)
32 4i62_A Amino acid ABC transpor 85.9 1.3 4.5E-05 39.3 6.3 48 128-177 151-198 (269)
33 2y7i_A STM4351; arginine-bindi 85.8 1.4 4.9E-05 38.1 6.3 48 128-177 113-160 (229)
34 3tql_A Arginine-binding protei 85.7 2.7 9.3E-05 36.0 8.1 95 127-243 109-213 (227)
35 2vha_A Periplasmic binding tra 85.5 5.1 0.00018 36.3 10.3 94 128-243 131-233 (287)
36 2dvz_A BUGE, putative exported 85.3 1.8 6.1E-05 42.2 7.4 127 127-265 143-298 (314)
37 3kbr_A Cyclohexadienyl dehydra 85.3 1.2 4.1E-05 39.1 5.6 49 127-177 125-173 (239)
38 2nyi_A Unknown protein; protei 85.1 3.3 0.00011 37.4 8.7 75 318-407 93-173 (195)
39 2pyy_A Ionotropic glutamate re 84.6 6.2 0.00021 33.7 9.9 77 128-217 113-193 (228)
40 2f5x_A BUGD; periplasmic bindi 83.6 2.4 8.3E-05 41.3 7.5 127 127-265 139-296 (312)
41 3hv1_A Polar amino acid ABC up 83.4 2.1 7.3E-05 38.4 6.6 94 128-243 128-233 (268)
42 3h7m_A Sensor protein; histidi 82.4 18 0.00063 30.9 12.1 114 150-280 51-170 (234)
43 2yln_A Putative ABC transporte 82.1 6.7 0.00023 36.0 9.6 92 128-243 165-262 (283)
44 3k5p_A D-3-phosphoglycerate de 81.9 8.1 0.00028 39.5 10.9 69 318-405 343-411 (416)
45 3tql_A Arginine-binding protei 81.3 7.4 0.00025 33.2 9.0 116 150-281 42-164 (227)
46 3lou_A Formyltetrahydrofolate 81.3 7.6 0.00026 37.8 10.0 67 318-399 10-81 (292)
47 4h5g_A Amino acid ABC superfam 81.2 2 6.9E-05 38.5 5.5 48 128-177 124-171 (243)
48 1ii5_A SLR1257 protein; membra 80.8 2.9 0.0001 36.0 6.3 77 128-217 117-197 (233)
49 4i62_A Amino acid ABC transpor 80.4 8.2 0.00028 34.0 9.2 116 150-281 82-204 (269)
50 1sc6_A PGDH, D-3-phosphoglycer 80.3 5.3 0.00018 40.5 8.8 63 318-399 331-393 (404)
51 1lst_A Lysine, arginine, ornit 80.1 3.5 0.00012 35.9 6.6 48 128-177 112-161 (239)
52 1wdn_A GLNBP, glutamine bindin 80.0 15 0.00052 31.1 10.6 116 150-281 42-163 (226)
53 2vpn_A Periplasmic substrate b 79.5 43 0.0015 31.8 15.0 172 127-306 2-217 (316)
54 1u8s_A Glycine cleavage system 79.3 5.9 0.0002 35.2 7.9 34 319-352 7-40 (192)
55 3uif_A Sulfonate ABC transport 79.2 43 0.0015 31.7 14.5 118 150-277 45-175 (348)
56 2pfz_A Putative exported prote 78.9 35 0.0012 32.2 13.7 170 127-306 2-214 (301)
57 1ygy_A PGDH, D-3-phosphoglycer 78.7 7.9 0.00027 40.4 9.8 72 318-407 454-526 (529)
58 2v25_A Major cell-binding fact 78.7 4.1 0.00014 35.7 6.6 48 128-177 149-200 (259)
59 4f3p_A Glutamine-binding perip 77.6 17 0.0006 31.9 10.5 116 150-281 63-184 (249)
60 2q88_A EHUB, putative ABC tran 77.3 4.1 0.00014 36.1 6.2 48 128-177 125-173 (257)
61 3kzg_A Arginine 3RD transport 77.2 9 0.00031 33.4 8.4 117 150-282 44-165 (237)
62 3del_B Arginine binding protei 77.1 12 0.0004 32.6 9.1 115 150-282 51-172 (242)
63 3obi_A Formyltetrahydrofolate 77.1 14 0.00046 35.9 10.3 67 318-399 6-75 (288)
64 3n0v_A Formyltetrahydrofolate 76.9 9.9 0.00034 36.8 9.2 67 318-399 8-76 (286)
65 3kbr_A Cyclohexadienyl dehydra 76.5 1.8 6.2E-05 37.9 3.6 116 150-281 55-179 (239)
66 4ab5_A Transcriptional regulat 76.3 10 0.00035 32.0 8.3 138 126-281 8-163 (222)
67 3o1l_A Formyltetrahydrofolate 76.1 16 0.00055 35.7 10.5 74 318-406 22-99 (302)
68 2pvu_A ARTJ; basic amino acid 75.9 4.2 0.00014 36.7 6.0 48 128-177 148-196 (272)
69 3k4u_A Binding component of AB 75.3 8.4 0.00029 33.8 7.7 115 150-280 45-168 (245)
70 2pfy_A Putative exported prote 74.3 48 0.0017 31.2 13.3 155 127-291 3-199 (301)
71 2pvu_A ARTJ; basic amino acid 73.1 24 0.00083 31.6 10.4 116 150-281 81-202 (272)
72 3mtj_A Homoserine dehydrogenas 72.6 7.4 0.00025 40.1 7.5 68 318-400 357-426 (444)
73 3qsl_A Putative exported prote 72.6 49 0.0017 30.4 12.7 116 150-275 65-194 (346)
74 4eq9_A ABC transporter substra 71.2 25 0.00086 30.3 9.7 94 128-243 116-220 (246)
75 3nrb_A Formyltetrahydrofolate 69.1 22 0.00075 34.4 9.6 67 318-399 7-74 (287)
76 1ii5_A SLR1257 protein; membra 69.0 37 0.0012 28.9 10.2 117 150-281 45-168 (233)
77 2x26_A Periplasmic aliphatic s 67.9 73 0.0025 29.1 14.9 139 127-276 4-160 (308)
78 3hn0_A Nitrate transport prote 66.7 82 0.0028 29.2 12.9 135 127-274 6-150 (283)
79 2nyi_A Unknown protein; protei 66.4 19 0.00064 32.3 8.0 33 320-352 7-39 (195)
80 2ozz_A Hypothetical protein YH 66.2 72 0.0025 29.9 12.2 115 147-274 40-161 (231)
81 3hv1_A Polar amino acid ABC up 65.6 2.7 9.2E-05 37.7 2.2 118 150-281 61-188 (268)
82 2yjp_A Putative ABC transporte 65.4 20 0.00068 32.8 8.2 116 150-281 98-218 (291)
83 3i6v_A Periplasmic His/Glu/Gln 65.0 26 0.00091 30.5 8.6 112 150-280 45-157 (232)
84 2y7i_A STM4351; arginine-bindi 64.9 17 0.00059 31.0 7.2 116 150-281 46-166 (229)
85 3ix1_A N-formyl-4-amino-5-amin 64.7 63 0.0022 29.5 11.5 113 150-273 35-157 (302)
86 2vha_A Periplasmic binding tra 63.7 57 0.0019 29.2 10.8 117 151-281 65-188 (287)
87 3p96_A Phosphoserine phosphata 63.5 22 0.00074 35.1 8.5 69 321-406 15-87 (415)
88 3qax_A Probable ABC transporte 63.1 35 0.0012 29.8 9.1 115 150-282 71-193 (268)
89 2hpg_A ABC transporter, peripl 62.6 37 0.0013 32.7 9.9 157 127-291 10-219 (327)
90 1sw5_A Osmoprotection protein 62.4 38 0.0013 31.5 9.6 139 150-290 35-207 (275)
91 3onm_A Transcriptional regulat 61.8 78 0.0027 27.3 14.0 133 126-278 27-170 (238)
92 1xs5_A 29 kDa protein, membran 61.8 1E+02 0.0034 28.5 16.1 109 127-244 4-124 (241)
93 1xt8_A Putative amino-acid tra 61.5 43 0.0015 30.3 9.6 116 150-281 87-207 (292)
94 2iee_A ORF2, probable ABC tran 61.4 19 0.00065 32.4 7.1 95 128-243 133-231 (271)
95 3ho7_A OXYR; beta-alpha-barrel 61.1 55 0.0019 27.6 9.8 137 126-280 11-167 (232)
96 4dz1_A DALS D-alanine transpor 59.5 30 0.001 30.7 8.1 116 150-281 69-197 (259)
97 2xwv_A Sialic acid-binding per 59.0 1.2E+02 0.0042 28.7 15.6 172 127-306 4-220 (312)
98 3n5l_A Binding protein compone 58.5 46 0.0016 31.5 9.6 82 128-218 117-213 (310)
99 3p7i_A PHND, subunit of alkylp 55.8 1.4E+02 0.0049 28.4 12.9 145 125-279 13-188 (321)
100 2x7q_A Ca3427, possible thiami 55.0 1.3E+02 0.0046 27.9 15.3 132 126-265 15-165 (321)
101 3mah_A Aspartokinase; aspartat 54.8 11 0.00038 32.6 4.1 51 325-399 28-78 (157)
102 2v25_A Major cell-binding fact 54.7 50 0.0017 28.5 8.5 117 150-280 82-205 (259)
103 4go7_X Aspartokinase; transfer 54.2 56 0.0019 29.9 9.0 31 324-354 42-72 (200)
104 3s1t_A Aspartokinase; ACT doma 53.8 28 0.00097 31.0 6.8 60 324-398 23-82 (181)
105 1ixc_A CBNR, LYSR-type regulat 53.8 1.2E+02 0.004 26.9 15.5 136 126-279 91-247 (294)
106 3p7i_A PHND, subunit of alkylp 53.1 15 0.0005 35.5 5.1 82 128-218 127-222 (321)
107 2dt9_A Aspartokinase; protein- 52.4 28 0.00097 30.2 6.4 28 324-351 23-50 (167)
108 3qsl_A Putative exported prote 52.0 15 0.0005 34.1 4.8 49 128-177 139-194 (346)
109 2q88_A EHUB, putative ABC tran 51.2 17 0.0006 31.9 4.9 115 151-281 54-179 (257)
110 1r9l_A Glycine betaine-binding 48.7 1.8E+02 0.0062 27.5 14.7 162 124-291 6-210 (309)
111 3oxn_A Putative transcriptiona 48.7 83 0.0028 27.0 8.9 137 126-281 19-173 (241)
112 2re1_A Aspartokinase, alpha an 45.9 36 0.0012 29.5 6.1 33 318-350 105-138 (167)
113 1tdj_A Biosynthetic threonine 45.8 23 0.00079 37.1 5.5 69 318-404 338-406 (514)
114 4ddd_A Immunogenic protein; ss 45.3 27 0.00092 33.5 5.6 49 128-177 147-202 (327)
115 2re1_A Aspartokinase, alpha an 45.0 20 0.0007 31.2 4.3 33 319-351 26-59 (167)
116 2dtj_A Aspartokinase; protein- 44.3 55 0.0019 28.8 7.1 34 318-351 97-131 (178)
117 3ab4_A Aspartokinase; aspartat 43.5 1E+02 0.0036 30.8 9.8 68 318-400 264-332 (421)
118 2dt9_A Aspartokinase; protein- 43.4 39 0.0013 29.3 5.9 34 317-350 96-130 (167)
119 1zbm_A Hypothetical protein AF 43.1 30 0.001 31.4 5.4 50 128-179 104-153 (280)
120 4eq9_A ABC transporter substra 42.9 1E+02 0.0036 26.2 8.6 116 151-280 49-174 (246)
121 2rc8_A Glutamate [NMDA] recept 42.5 26 0.00089 32.3 4.8 79 128-217 171-259 (294)
122 4ddd_A Immunogenic protein; ss 41.6 2.3E+02 0.008 26.8 12.4 134 127-266 33-195 (327)
123 4gvo_A LMO2349 protein; struct 41.4 1.4E+02 0.0047 26.1 9.4 79 128-217 119-205 (243)
124 2yln_A Putative ABC transporte 40.5 91 0.0031 28.2 8.2 114 150-280 97-215 (283)
125 3tmg_A Glycine betaine, L-prol 39.9 2.4E+02 0.0081 26.3 15.8 134 150-289 45-198 (280)
126 2h9b_A HTH-type transcriptiona 39.9 2.1E+02 0.0073 25.8 12.0 52 127-178 91-147 (312)
127 1lst_A Lysine, arginine, ornit 39.6 73 0.0025 27.2 7.0 115 150-280 44-166 (239)
128 3n5l_A Binding protein compone 39.1 2.2E+02 0.0076 26.6 11.0 144 127-280 5-180 (310)
129 3hn0_A Nitrate transport prote 38.3 28 0.00096 32.5 4.4 49 128-177 97-150 (283)
130 2dtj_A Aspartokinase; protein- 37.6 36 0.0012 30.0 4.7 27 325-351 23-49 (178)
131 2esn_A Probable transcriptiona 34.5 2.5E+02 0.0086 25.0 11.5 120 147-281 126-259 (310)
132 2y7p_A LYSR-type regulatory pr 33.0 63 0.0022 27.7 5.6 121 147-279 33-161 (218)
133 3uif_A Sulfonate ABC transport 32.1 36 0.0012 32.2 4.1 47 128-177 120-173 (348)
134 3dhx_A Methionine import ATP-b 31.5 51 0.0017 26.8 4.4 32 376-409 66-97 (106)
135 3gzg_A Molybdate-binding perip 29.4 1.7E+02 0.0059 26.8 8.2 77 128-215 133-221 (253)
136 3u65_B TP33 protein; tetratric 29.2 3.8E+02 0.013 25.6 12.5 175 126-306 10-233 (328)
137 3r26_A Molybdate-binding perip 29.0 71 0.0024 28.7 5.4 50 128-178 117-175 (237)
138 3fzv_A Probable transcriptiona 28.8 61 0.0021 29.0 4.8 53 126-178 95-152 (306)
139 1tdj_A Biosynthetic threonine 28.3 54 0.0019 34.3 4.9 34 321-355 436-469 (514)
140 1pb7_A N-methyl-D-aspartate re 27.6 41 0.0014 31.0 3.5 74 135-217 176-257 (292)
141 1p99_A Hypothetical protein PG 27.2 42 0.0014 32.1 3.6 71 127-206 40-118 (295)
142 1uth_A LYSR-type regulatory pr 26.5 3.6E+02 0.012 24.3 11.9 116 147-280 130-259 (315)
143 2czl_A Hypothetical protein TT 25.9 86 0.0029 28.2 5.3 48 128-177 97-144 (272)
144 2ozz_A Hypothetical protein YH 25.2 75 0.0025 29.8 4.8 47 128-176 113-161 (231)
145 4esw_A Pyrimidine biosynthesis 25.2 1.8E+02 0.0062 27.3 7.7 88 150-245 39-134 (342)
146 3tvi_A Aspartokinase; structur 23.7 1.8E+02 0.006 29.7 7.7 101 277-401 252-363 (446)
147 2x26_A Periplasmic aliphatic s 23.5 86 0.0029 28.6 4.9 47 128-177 106-159 (308)
148 3kht_A Response regulator; PSI 23.4 74 0.0025 25.2 3.9 79 226-307 11-90 (144)
149 2pyy_A Ionotropic glutamate re 23.4 3.2E+02 0.011 22.6 14.2 113 150-280 41-163 (228)
150 3fxq_A LYSR type regulator of 23.3 4E+02 0.014 23.7 12.9 118 147-280 117-248 (305)
151 2qrr_A Methionine import ATP-b 22.7 96 0.0033 24.7 4.4 31 376-408 68-98 (101)
152 2vd2_A ATP phosphoribosyltrans 22.5 92 0.0032 29.0 4.8 146 125-288 3-174 (214)
153 1ryo_A Serotransferrin; iron t 20.8 3.9E+02 0.013 26.0 9.2 66 226-293 10-86 (327)
154 3l76_A Aspartokinase; alloster 20.7 1.8E+02 0.006 30.8 7.1 38 318-355 444-482 (600)
155 1us5_A Putative GLUR0 ligand b 20.4 4.7E+02 0.016 23.5 12.4 137 127-275 20-187 (314)
No 1
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls}
Probab=100.00 E-value=2.2e-88 Score=665.91 Aligned_cols=268 Identities=47% Similarity=0.752 Sum_probs=256.3
Q ss_pred ccEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQL 206 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l 206 (423)
.++||||||+|||||+||.++| +++||.||++||++|++|++||||||||||++|+|.+|||+|.+++|+|+||+.+
T Consensus 6 ~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~l 82 (283)
T 2qmx_A 6 NWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETFV 82 (283)
T ss_dssp CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEEE
T ss_pred CcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEEE
Confidence 5699999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCce
Q 014547 207 PVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQV 286 (423)
Q Consensus 207 pI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~I 286 (423)
||+|||++++|+++++|++||||||||+||++||+++ |+++++++.|||+||+++++++.+..|||||+.||++|||+|
T Consensus 83 ~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~-p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~i 161 (283)
T 2qmx_A 83 KVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATH-PQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDI 161 (283)
T ss_dssp ECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHC-TTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEE
T ss_pred eeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHC-CCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCce
Confidence 9999999999999999999999999999999999999 999999999999999999998778999999999999999999
Q ss_pred eecCccCCCCCeeEEEEEeeCCCC--------CCCCCCCeEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCC
Q 014547 287 LEDGIQDDSSNVTRFVMLAREPII--------PRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRP 358 (423)
Q Consensus 287 La~nIqD~~~N~TRFlVLsr~~~~--------~~~~~~~KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p 358 (423)
|++||||.++|+|||+||++++.. +.. +.+||||+|+++|+||+|+++|+.|+.+|||||||||||.++++
T Consensus 162 l~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~~-~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~ 240 (283)
T 2qmx_A 162 LKENLADEEWNITRFFCIAHENNPDISHLKVRPDV-ARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA 240 (283)
T ss_dssp EESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCEE-EEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECSSST
T ss_pred ecccCcCCCCCeeeEEEEecCccccccccccCCCC-CCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcCCCC
Confidence 999999999999999999998643 221 24799999999999999999999999999999999999999865
Q ss_pred cccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhhcCceEEEccccCC
Q 014547 359 IRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMD 413 (423)
Q Consensus 359 ~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLGsYp~~ 413 (423)
|+|+|||||+||.+|++++++|++|++.+.++|+|||||..
T Consensus 241 --------------~~Y~FfvD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~ 281 (283)
T 2qmx_A 241 --------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGVV 281 (283)
T ss_dssp --------------TEEEEEEEEESCTTSHHHHHHHHHHHTTCSEEEEEEEEEEE
T ss_pred --------------cceEEEEEEecCCCcHHHHHHHHHHHHhcCeEEEeeeeeCC
Confidence 99999999999999999999999999999999999999963
No 2
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens}
Probab=100.00 E-value=9.5e-88 Score=669.36 Aligned_cols=274 Identities=29% Similarity=0.435 Sum_probs=259.2
Q ss_pred ccEEEEeCCCccHHHHHHhhhCC--CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcC-CcEEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYP--NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRH-RLHIVGE 203 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~--~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~-~L~IvgE 203 (423)
.++||||||+|||||+||+++|+ +.+++||.||++||++|++|++||||||||||++|+|.+|||+|.++ +|+|+||
T Consensus 6 ~~~VaylGp~GtfS~~Aa~~~~~~~~~~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~tlD~L~~~~~l~IvgE 85 (313)
T 3mwb_A 6 AVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVEGGVTATLDAIATGQELRIIRE 85 (313)
T ss_dssp -CEEEEESSTTSHHHHHHTTSTTGGGSEEEEESSHHHHHHHHHTTSCSEEEEEEESCTTCCHHHHHHHTTSSSCCEEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHHhhcCCccEEecCCHHHHHHHHHcCCCCeeEEEEeecCCCccHHHHHHhhCCCCeEEEEE
Confidence 67999999999999999999884 57899999999999999999999999999999999999999999985 8999999
Q ss_pred EEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcC
Q 014547 204 VQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYG 283 (423)
Q Consensus 204 i~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYg 283 (423)
+.+||+|||++++|.++++|++||||||||+||++||++++|+++++++.|||+||+++++++++..|||||+.||++||
T Consensus 86 ~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIas~~AA~~Yg 165 (313)
T 3mwb_A 86 ALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDEHLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQP 165 (313)
T ss_dssp EEEECCCEEEECTTCCGGGCSEEEECHHHHTTSHHHHHHHCTTCEEEECSCHHHHHHHTTSTTCSCSEEEECHHHHHHCT
T ss_pred EEEeeeEEEEcCCCCCcccCcEEEEEhHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHhCCCCCccccCcHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999988767899999999999999
Q ss_pred -CceeecCccCCCCCeeEEEEEeeCCCCCCCCCCCeEEEEEEeC-CCccHHHHHHHHHHhCCceeeeeeeeeCCCCCccc
Q 014547 284 -MQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHD-KGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRL 361 (423)
Q Consensus 284 -L~ILa~nIqD~~~N~TRFlVLsr~~~~~~~~~~~KTSivf~l~-~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~ 361 (423)
|+||+++|||.++|+|||+||+++...+...+.+||||+|+++ |+||+|+++|+.|+.+|||||||||||.++++
T Consensus 166 ~L~il~~~I~D~~~N~TRFlvl~~~~~~~~~~~~~kTSl~f~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~--- 242 (313)
T 3mwb_A 166 GLNVLAEDIGDNPDAVTRFILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL--- 242 (313)
T ss_dssp TCEEEESCCCSCTTCEEEEEEEECSCCCCCCCSSEEEEEEEECSSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST---
T ss_pred ChhhhhhcccCCCcceeEEEEEecCCCCCCCCCCCeEEEEEEeCCCCCCHHHHHHHHHHHCCccEEEEEEeecCCCC---
Confidence 9999999999999999999999986444344568999999997 89999999999999999999999999999865
Q ss_pred ccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhhcCceEEEccccCCC
Q 014547 362 VDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 414 (423)
Q Consensus 362 ~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLGsYp~~~ 414 (423)
|+|+|||||+||.+|++++++|++|++.+.++|+|||||...
T Consensus 243 -----------~~Y~FfiD~eg~~~d~~v~~aL~~L~~~~~~~kiLGsYp~~~ 284 (313)
T 3mwb_A 243 -----------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARAD 284 (313)
T ss_dssp -----------TSEEEEEEEESCTTSHHHHHHHHHHHHHCTTCEEEEEEECTT
T ss_pred -----------ccEEEEEEEeCCCCcHHHHHHHHHHHHhcCcEEEEeeeecCc
Confidence 899999999999999999999999999999999999999743
No 3
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3
Probab=100.00 E-value=4.1e-86 Score=645.12 Aligned_cols=260 Identities=26% Similarity=0.359 Sum_probs=249.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhCCCCc--eeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYPNCE--AIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEV 204 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~~~e--~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi 204 (423)
.++||||||+|||||+||+++|++.+ ++||.||++||++|++|++||||||||||++|+|.+|||+|.+++|+|+||+
T Consensus 3 ~~~iaylGp~Gtfs~~Aa~~~f~~~~~~~~~~~s~~~v~~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~ 82 (267)
T 2qmw_A 3 AMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEI 82 (267)
T ss_dssp -CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEE
T ss_pred ccEEEEECCCCcHHHHHHHHhhccCCceEEEcCCHHHHHHHHHcCCCCEEEEEehhcCCCChHHHHHHhhcCCcEEEEEE
Confidence 57999999999999999999998754 9999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCC
Q 014547 205 QLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGM 284 (423)
Q Consensus 205 ~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL 284 (423)
.+||+|||++++|+++++|++||||||||+||++||++ |+++++++.|||+||+++++ + .|||||+.||++|||
T Consensus 83 ~l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~--p~~~~~~~~sTA~AA~~v~~---~-~AAIas~~AA~~ygL 156 (267)
T 2qmw_A 83 RLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQ--HQFDYDYVDSTIQSLTKIEN---G-VAAIAPLGSGEAYGF 156 (267)
T ss_dssp EEECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHH--TTCEEEECSSHHHHHHTCBT---T-EEEEEETTTSGGGTC
T ss_pred EEEeeeEEEecCCCCHhhCCEEEEEhHHHHHHHHHHhc--CCCEEEEcCCHHHHHHHHcC---C-CcEECCHHHHHHCCC
Confidence 99999999999999999999999999999999999999 88999999999999999986 3 999999999999999
Q ss_pred ceeecCccCCCCCeeEEEEEeeCCCCCCCCCCCeEEEEEEe---CCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCccc
Q 014547 285 QVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAH---DKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRL 361 (423)
Q Consensus 285 ~ILa~nIqD~~~N~TRFlVLsr~~~~~~~~~~~KTSivf~l---~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~ 361 (423)
+||++||||.++|+|||+||++++ .+ + .+||||+|++ +|+||+|+++|+.|+.+|||||||||||.++++
T Consensus 157 ~il~~~I~D~~~N~TRF~vl~~~~-~~--~-~~ktsl~f~~~~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~~~~--- 229 (267)
T 2qmw_A 157 TPIDTHIEDYPHNVTRFLVIKNQQ-QF--D-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--- 229 (267)
T ss_dssp CEEEECCCSCSCCEEEEEEEESCC-CC--C-SSCSEEEEEEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSST---
T ss_pred cEeeccccCCCCCceEEEEEecCC-CC--C-CCeEEEEEEcCCCCCCcChHHHHHHHHHHcCCCeeEEEEeecCCCC---
Confidence 999999999999999999999987 33 2 5799999999 799999999999999999999999999999865
Q ss_pred ccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhhcCceEEEcccc
Q 014547 362 VDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYP 411 (423)
Q Consensus 362 ~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLGsYp 411 (423)
|+|+|||||+ |.+|++++++|++|++.+.++|+|||||
T Consensus 230 -----------~~Y~FfiD~e-~~~d~~v~~aL~~L~~~~~~~kiLGsY~ 267 (267)
T 2qmw_A 230 -----------GMYRFFVQAD-SAITTDIKKVIAILETLDFKVEMIGAFN 267 (267)
T ss_dssp -----------TCEEEEEEES-CCSCHHHHHHHHHHHHTTEEEEEEEEEC
T ss_pred -----------ccEEEEEEEe-cCCcHHHHHHHHHHHHhcCeEEEEeeeC
Confidence 9999999999 9999999999999999999999999997
No 4
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis}
Probab=100.00 E-value=1.2e-83 Score=643.67 Aligned_cols=268 Identities=24% Similarity=0.344 Sum_probs=246.5
Q ss_pred CccEEEEeCCCccHHHHHHhhhC--------CCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcC-
Q 014547 126 SQLRVAYQGVPGAYSEAAAGKAY--------PNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRH- 196 (423)
Q Consensus 126 ~~~~VayLGP~GTfSh~AA~~~f--------~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~- 196 (423)
+++|||||||+|||||+||+++| ++.+++||.||++||++|++|+ ||||||||||++|+|.+|||+|.++
T Consensus 5 ~~~~VaylGp~GtfS~~Aa~~~~~~~~~f~~~~~~~~p~~s~~~vf~aV~~g~-d~gVVPIENS~eG~V~~tlDlL~~~~ 83 (329)
T 3luy_A 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHGD-GWGIVAWENNVEGYVVPNLDALIDAK 83 (329)
T ss_dssp CCEEEEEESSTTSHHHHHHHHHHHHTGGGCTTCEEEEEESSHHHHHHHHHHTS-SEEEEEEEETTTEECHHHHHHHHTCS
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHhccccCCCCceEEeCCCHHHHHHHHHcCC-CEEEEEEcccCCCchHHHHHHhhccC
Confidence 36799999999999999999975 3678999999999999999999 9999999999999999999999875
Q ss_pred CcEEEEEEEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccH
Q 014547 197 RLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASA 276 (423)
Q Consensus 197 ~L~IvgEi~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~ 276 (423)
+|+|+||+.+||+|||++++|.++++|++||||||||+||++||+++ +++.+++.|||+||+.++ ++.|||||+
T Consensus 84 ~l~I~gE~~l~I~h~Ll~~~g~~l~~I~~V~SHPqAlaQC~~fL~~~--~~~~v~~~STA~AA~~v~----~~~AAIas~ 157 (329)
T 3luy_A 84 DLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQCKRFIAEH--RLSTQPATSNAAACRDLI----PGEIAFGPA 157 (329)
T ss_dssp SCEEEEEEEEECCCEEEEETTCCGGGCCEEEECHHHHHHTHHHHHHT--TCEEEECSSHHHHHHTCC----TTEEEEECT
T ss_pred CcEEEEEEEEEeeeeeecCCCCCcccCcEEEEcHHHHHHHHHHHHHc--CCeEEeccCHHHHHHHhC----CCCceeCCH
Confidence 89999999999999999999999999999999999999999999998 478899999999999875 368999999
Q ss_pred HHHHHcCCceeecCccCCCCCeeEEEEEeeCCCC------CC-CCCCCeEEEEEEeC--CCccHHHHHHHHHHhCCceee
Q 014547 277 RAAELYGMQVLEDGIQDDSSNVTRFVMLAREPII------PR-TDRPFKTSIVFAHD--KGTSVLFKVLSAFAFRNISLT 347 (423)
Q Consensus 277 ~AAelYgL~ILa~nIqD~~~N~TRFlVLsr~~~~------~~-~~~~~KTSivf~l~--~~pGaL~~vL~~Fa~~~INLt 347 (423)
.||++|||+||+++|||.++|+|||+||+++... +. ....+|||++|.++ |+||+|+++|++|+.+|||||
T Consensus 158 ~AAelYgL~iLa~~I~D~~~N~TRFlvl~~~~~~~~~~~~~~~~~~~~kts~i~~~~~~~~pGaL~~~L~~Fa~~gINLt 237 (329)
T 3luy_A 158 ICGELYDITRIGTAIQDYQGAATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMT 237 (329)
T ss_dssp THHHHSSEEEEESSCCSCSCCEEEEEEEECHHHHHHHTHHHHHTTCCCEEEEEEEECSCCSTTHHHHHHHHHHHTTCCEE
T ss_pred HHHHHcCCccccccccCCCcceeEEEEEeccccccccccCCCCCCCCCceEEEEEecCCCCCCHHHHHHHHHHHCCcceE
Confidence 9999999999999999999999999999997532 11 11236888888766 589999999999999999999
Q ss_pred eeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhhcCceEEEccccCCC
Q 014547 348 KIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPMDM 414 (423)
Q Consensus 348 kIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLGsYp~~~ 414 (423)
||||||.++++ |+|+|||||+||.+|+++++||++|++.+.++|+|||||...
T Consensus 238 kIESRP~~~~~--------------~~Y~FfiD~eg~~~d~~v~~AL~~L~~~~~~~kiLGsYp~~~ 290 (329)
T 3luy_A 238 SFISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTLAVYPRRE 290 (329)
T ss_dssp EEEEEEETTEE--------------EEEEEEEEESSCTTSHHHHHHHHHHHHTTCEEEEEEEEECCC
T ss_pred EEEeeECCCCC--------------ccEEEEEEEeCCcCCHHHHHHHHHHHHhCCeEEEEeeccCCC
Confidence 99999999764 999999999999999999999999999999999999999754
No 5
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A
Probab=99.85 E-value=1.7e-21 Score=199.84 Aligned_cols=92 Identities=25% Similarity=0.381 Sum_probs=85.1
Q ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHH
Q 014547 314 DRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNA 393 (423)
Q Consensus 314 ~~~~KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~a 393 (423)
++.+||||+|+++|+||+|+++|++|+.+|||||||||||+++++ |+|.|||||+ |.+++++++|
T Consensus 30 tg~dKTSLiFsl~n~pGAL~~~L~~Fa~~gINLTkIESRPsk~~~--------------~eY~FfVD~e-h~~d~~v~~A 94 (429)
T 1phz_A 30 NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------DEYEFFTYLD-KRTKPVLGSI 94 (429)
T ss_dssp CSSCCEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCT--------------TEEEEEECBC-GGGHHHHHHH
T ss_pred CCCCeEEEEEEeCCCccHHHHHHHHHHHcCCceEEEEeeecCCCC--------------ccEEEEEEEe-eCCCHHHHHH
Confidence 345799999999999999999999999999999999999999764 8999999999 9999999999
Q ss_pred HHHHHhh-cCceEEEcccc-CCCCCCCCC
Q 014547 394 LAEVQEF-TSFLRVLGSYP-MDMTPWSPS 420 (423)
Q Consensus 394 L~eL~~~-~~~vrvLGsYp-~~~~pw~p~ 420 (423)
|++|++. +.++|+||+.. .+..||||.
T Consensus 95 L~eL~~~~~~~vkiLGs~~~~~~vPWFPR 123 (429)
T 1phz_A 95 IKSLRNDIGATVHELSRDKEKNTVPWFPR 123 (429)
T ss_dssp HHHHHHTTCCCEEEEETTCCTTCEECCCS
T ss_pred HHHHHhhccceEEECCCcCccccCCCCCc
Confidence 9999999 99999999963 456899996
No 6
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A
Probab=96.78 E-value=0.0099 Score=46.22 Aligned_cols=67 Identities=7% Similarity=0.122 Sum_probs=49.5
Q ss_pred CeEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHH
Q 014547 317 FKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAE 396 (423)
Q Consensus 317 ~KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~e 396 (423)
+.+.|.+..+|+||.|.++.+.|++.|+|+..+...+... .....|-+++. +...+.+++++
T Consensus 4 ~~~~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~~---------------~~~~~i~v~~~---~~~~l~~l~~~ 65 (88)
T 2ko1_A 4 FLAGIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKDG---------------IFTCNLMIFVK---NTDKLTTLMDK 65 (88)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECSS---------------EEEEEEEEEES---SHHHHHHHHHH
T ss_pred EEEEEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcCC---------------EEEEEEEEEEC---CHHHHHHHHHH
Confidence 4667778889999999999999999999999998876431 02233333332 34678888999
Q ss_pred HHhhc
Q 014547 397 VQEFT 401 (423)
Q Consensus 397 L~~~~ 401 (423)
|++..
T Consensus 66 L~~~~ 70 (88)
T 2ko1_A 66 LRKVQ 70 (88)
T ss_dssp HTTCT
T ss_pred HhcCC
Confidence 87654
No 7
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7
Probab=96.31 E-value=0.027 Score=44.38 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=32.9
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCC
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHR 355 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~ 355 (423)
+..|.+..+|+||.|.++.+.|+.+|+|+..+......
T Consensus 5 ~~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~ 42 (91)
T 1zpv_A 5 KAIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD 42 (91)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET
T ss_pred eEEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc
Confidence 45677788999999999999999999999999886543
No 8
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6
Probab=96.09 E-value=0.037 Score=50.03 Aligned_cols=71 Identities=13% Similarity=0.203 Sum_probs=53.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
+-.|.+...|+||.|.++.+.|+.+|+|+..+...|.... ....+.+-+++ ++..+.++++.|
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~---------------~~sriti~V~~--d~~~leqI~kqL 65 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDP---------------TLSRMTIQTVG--DEKVLEQIEKQL 65 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCS---------------SEEEEEEEEES--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCC---------------CEEEEEEEEec--cHHHHHHHHHHH
Confidence 3456667789999999999999999999999999987531 13445555655 467888888888
Q ss_pred HhhcCceE
Q 014547 398 QEFTSFLR 405 (423)
Q Consensus 398 ~~~~~~vr 405 (423)
++.-.=++
T Consensus 66 ~Kl~dV~~ 73 (164)
T 2f1f_A 66 HKLVDVLR 73 (164)
T ss_dssp HHSTTEEE
T ss_pred cCCCCEEE
Confidence 87654333
No 9
>2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6
Probab=95.73 E-value=0.052 Score=49.15 Aligned_cols=72 Identities=8% Similarity=0.182 Sum_probs=53.6
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
|-.|.+.+.|+||.|.++.+.|+.+|+|+..+...|.... .-..+-+-+++ ++..+.++.++|
T Consensus 4 ~~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~---------------g~sritivV~~--d~~~leql~kQL 66 (165)
T 2pc6_A 4 RHIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDP---------------TLSRMTLVTNG--PDEIVEQITKQL 66 (165)
T ss_dssp EEEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSST---------------TEEEEEEEEEE--CHHHHHHHHHHH
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCC---------------CEEEEEEEEec--cHHHHHHHHHHh
Confidence 4567777889999999999999999999999999887531 12344445555 367888888888
Q ss_pred HhhcCceEE
Q 014547 398 QEFTSFLRV 406 (423)
Q Consensus 398 ~~~~~~vrv 406 (423)
.+.-.=+++
T Consensus 67 ~Kl~dV~~V 75 (165)
T 2pc6_A 67 NKLIEVVKL 75 (165)
T ss_dssp HHSTTEEEE
T ss_pred cCCCCEEEE
Confidence 876544333
No 10
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6
Probab=95.45 E-value=0.07 Score=49.62 Aligned_cols=72 Identities=13% Similarity=0.138 Sum_probs=53.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
+-.|.+.++|+||.|.++.+.|+.||+|+..|-.-|.... .-..+.|-+++. +..++++.++|
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~---------------gisRitIvV~g~--e~~ieqL~kQL 91 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETP---------------GLSRLVIMVKGD--DKTIEQIEKQA 91 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSST---------------TEEEEEEEEEEC--TTHHHHHHHHH
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCC---------------CEEEEEEEEECC--HHHHHHHHHHh
Confidence 4566777889999999999999999999999998887531 123444455553 56778888888
Q ss_pred HhhcCceEE
Q 014547 398 QEFTSFLRV 406 (423)
Q Consensus 398 ~~~~~~vrv 406 (423)
.+.-.-++|
T Consensus 92 ~KLidVikV 100 (193)
T 2fgc_A 92 YKLVEVVKV 100 (193)
T ss_dssp TTSTTEEEE
T ss_pred cCcCceEEE
Confidence 876554444
No 11
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=95.02 E-value=0.67 Score=39.88 Aligned_cols=94 Identities=15% Similarity=0.074 Sum_probs=66.0
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc---CCcEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR---HRLHIVGE 203 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~IvgE 203 (423)
.+|++. .|+..+....+.+++.+++.+.+.++++++|.+|++|+.+.+-. ++..+ .+ ..+.+.+.
T Consensus 110 ~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---------~~~~~~~~~~~~~l~~~~~ 178 (226)
T 1wdn_A 110 KVVAVK--SGTGSVDYAKANIKTKDLRQFPNIDNAYMELGTNRADAVLHDTP---------NILYFIKTAGNGQFKAVGD 178 (226)
T ss_dssp CEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSCSEEEEEHH---------HHHHHHHTTTTTTEEEEEE
T ss_pred CEEEEE--cCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCcCEEEeCcH---------HHHHHHHhCCCCceEEecC
Confidence 478884 67777777766677888899999999999999999998887622 22222 22 35788877
Q ss_pred EEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 204 VQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 204 i~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
...+..++++.+++ +|+-..+..++|.+.
T Consensus 179 ~~~~~~~~~~~~k~-----------~~~l~~~~~~~l~~l 207 (226)
T 1wdn_A 179 SLEAQQYGIAFPKG-----------SDELRDKVNGALKTL 207 (226)
T ss_dssp EEEEEEEEEEECTT-----------CHHHHHHHHHHHHHH
T ss_pred CcccCceEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 66666677776653 355556666666553
No 12
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=93.18 E-value=1.1 Score=38.83 Aligned_cols=98 Identities=12% Similarity=-0.046 Sum_probs=65.5
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLP 207 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lp 207 (423)
.+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. .....+......++.+.+....+
T Consensus 118 ~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 190 (234)
T 3h7m_A 118 RKVALH--RDGIMHEYLAERGYGKDLVLTPTPADALRLLAAGGCDYAVVAMV-----PGMYIIRENRLTNLVPVARSIAA 190 (234)
T ss_dssp SCEEEE--TTSHHHHHHHTTTCGGGEEEESSHHHHHHHHHTTSSSEEEEEHH-----HHHHHHHHTTCTTEEEEEEEEEE
T ss_pred CEEEEE--eCchHHHHHHhcCCCceEEEeCCHHHHHHHHHcCCceEEEeccH-----HHHHHHHhcCCCceEEeccccCC
Confidence 478886 56766666666666778999999999999999999999888522 01111111111358888877777
Q ss_pred eeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 208 VHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 208 I~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
...+++..++ +|+-..+..+.|.+.
T Consensus 191 ~~~~~~~~~~-----------~~~l~~~l~~~l~~l 215 (234)
T 3h7m_A 191 QRYGYAVRQG-----------DAELLARFSEGLAIL 215 (234)
T ss_dssp EEEEEEEETT-----------CHHHHHHHHHHHHHH
T ss_pred CceEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 7777776653 355556666666553
No 13
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=93.13 E-value=0.55 Score=42.75 Aligned_cols=98 Identities=19% Similarity=0.205 Sum_probs=67.6
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEE-
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQL- 206 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l- 206 (423)
.+||+.. |+..+....+.+++.+++.+++.++++++|.+|++|+++..-. . ....+......++.+.+....
T Consensus 140 ~~i~v~~--g~~~~~~l~~~~~~~~~~~~~~~~~~l~~L~~GrvDa~i~~~~-~----~~~~~~~~~~~~l~~~~~~~~~ 212 (267)
T 3mpk_A 140 RTVALVR--NSAAIPLLQRRYPQAKVVTADNPSEAMLMVANGQADAVVQTQI-S----ASYYVNRYFAGKLRIASALDLP 212 (267)
T ss_dssp CEEEEET--TCTHHHHHHHHCTTSEEEEESSHHHHHHHHHHTSCSEEEEEHH-H----HHHHHHHHCTTTEEEEEECSSC
T ss_pred CEEEEeC--CchhHHHHHHhCCCcEEEEeCCHHHHHHHHHcCCCCEEEecHH-H----HHHHHHhcCCCceEEEeccCCC
Confidence 5899874 6666666667788889999999999999999999999988622 1 111111112346888887553
Q ss_pred eeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 207 PVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 207 pI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+...+++.+++ +|+-..+..+.|.+.
T Consensus 213 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 238 (267)
T 3mpk_A 213 PAEIALATTRG-----------QTELMSILNKALYSI 238 (267)
T ss_dssp CEEEEEEEETT-----------CHHHHHHHHHHHHTS
T ss_pred ceeEEEEEcCC-----------CHHHHHHHHHHHHhC
Confidence 56666766653 466667777777664
No 14
>2jhe_A Transcription regulator TYRR; aromatic hydrocarbons catabolism, TYRR protei nucleotide-binding, transcription regulation, activator; HET: PG4; 2.30A {Escherichia coli}
Probab=92.77 E-value=0.62 Score=39.93 Aligned_cols=62 Identities=18% Similarity=0.320 Sum_probs=47.8
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhh
Q 014547 321 IVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEF 400 (423)
Q Consensus 321 ivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~ 400 (423)
|-+...|++|.|.+++++++.+++|+..++.+|. + + +|+.++. .....+..++..+++.
T Consensus 3 ~~v~~~dr~g~l~~i~~~l~~~~~ni~~~~~~~~-g------------------~-i~~~~~~-~~~~~~~~L~~~l~~i 61 (190)
T 2jhe_A 3 LEVFCEDRLGLTRELLDLLVLRGIDLRGIEIDPI-G------------------R-IYLNFAE-LEFESFSSLMAEIRRI 61 (190)
T ss_dssp EEEEECSCTTHHHHHHHHHHHTTCCEEEEEEETT-T------------------E-EEEEECC-CCHHHHHHHHHHHHHS
T ss_pred EEEEEecCCcHHHHHHHHHHHcCCCeEEEEEecC-C------------------E-EEEEEEe-CCHHHHHHHHHHHHcC
Confidence 4455678999999999999999999999999775 1 2 6677763 4456677777777776
Q ss_pred cCc
Q 014547 401 TSF 403 (423)
Q Consensus 401 ~~~ 403 (423)
...
T Consensus 62 ~~~ 64 (190)
T 2jhe_A 62 AGV 64 (190)
T ss_dssp TTE
T ss_pred CCe
Confidence 543
No 15
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=92.75 E-value=0.86 Score=40.14 Aligned_cols=94 Identities=10% Similarity=0.132 Sum_probs=64.3
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-c---------CC
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-R---------HR 197 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---------~~ 197 (423)
.+||+. .|+..+....+.+++.+++.+.+.++++++|.+|++|+.+..-. ++..+. + .+
T Consensus 111 ~~i~~~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~~~l~~~ 179 (237)
T 3kzg_A 111 KKIGVR--KGTPYARQVLSENRNNQVIFYELIQDMLLGLSNNQVDASLMDYE---------AAKYWMASEPYAYKLIGKK 179 (237)
T ss_dssp CEEEEE--TTSTHHHHHHHTCSSCEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHTTSSTTHHHHCCS
T ss_pred CEEEEe--cCCHHHHHHHHhCCCCcEEEeCCHHHHHHHHHcCCCCEEEeCcH---------HHHHHHHhCCccccccCCc
Confidence 488885 56665555556677889999999999999999999999887622 222222 2 26
Q ss_pred cEEEEEEE-EeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 198 LHIVGEVQ-LPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 198 L~IvgEi~-lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+.+.+... .+...+++.+++ +|+-..+..++|.+.
T Consensus 180 l~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~l 215 (237)
T 3kzg_A 180 YKLIGKKISIGEGYSIMANPD-----------QFVLIKKINKILLEM 215 (237)
T ss_dssp EEEEEEEEECTTCBCCEECGG-----------GHHHHHHHHHHHHHH
T ss_pred eEEecCccccCccEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 88888754 555566665532 456666666666653
No 16
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=92.73 E-value=0.57 Score=41.56 Aligned_cols=99 Identities=18% Similarity=0.051 Sum_probs=66.3
Q ss_pred ccEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQL 206 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l 206 (423)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+.... .+...+.......+.+.++...
T Consensus 115 g~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 187 (245)
T 3k4u_A 115 ELTLVTK--FGVSAEYAAKRLFKNAKLKTYDTEAEAVQEVLNGKADMFIFDLP-----FNVAFMAQKGQGYLVHLDTSLT 187 (245)
T ss_dssp SCEEEEE--TTSHHHHHHHHHCSSSEEEEESSHHHHHHHHHSSSSEEEEEEHH-----HHHHHHHHTTTTTEEEECCCCS
T ss_pred CcEEEEe--CCcHHHHHHHhhCCcCCEEEeCCHHHHHHHHHcCCCcEEEEcHH-----HHHHHHhcCCccceeecCCCcc
Confidence 4588886 78888887777788889999999999999999999999887621 1111111111234666665555
Q ss_pred eeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 207 PVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 207 pI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+...+++.+++ +|+-..+..++|.+.
T Consensus 188 ~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 213 (245)
T 3k4u_A 188 YEPLGWAIKKG-----------DPDFLNWLNHFLAQI 213 (245)
T ss_dssp CEEECCEECTT-----------CHHHHHHHHHHHHHH
T ss_pred cccEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 56666666543 455556666666553
No 17
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12
Probab=92.29 E-value=0.26 Score=46.77 Aligned_cols=67 Identities=13% Similarity=0.170 Sum_probs=44.2
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
..+|.+...|+||.|.++++.++++++|+..|..+..+..+ . ......+||++.. .+++++++|
T Consensus 4 ~VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~-------~-----ng~A~I~IEV~d~----~Le~LL~kL 67 (223)
T 1y7p_A 4 LRGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGE-------H-----EGKALIYFEIEGG----DFEKILERV 67 (223)
T ss_dssp CEEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSST-------T-----TTEEEEEEEECSS----CHHHHHHHH
T ss_pred eEEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCC-------c-----CCEEEEEEEECCC----CHHHHHHHH
Confidence 46788889999999999999999999999999987654210 0 0123333777643 566777777
Q ss_pred Hhh
Q 014547 398 QEF 400 (423)
Q Consensus 398 ~~~ 400 (423)
++.
T Consensus 68 rkI 70 (223)
T 1y7p_A 68 KTF 70 (223)
T ss_dssp HTC
T ss_pred hCC
Confidence 643
No 18
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=92.28 E-value=0.81 Score=40.75 Aligned_cols=79 Identities=15% Similarity=0.056 Sum_probs=60.5
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-c---CCcEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-R---HRLHIVGE 203 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---~~L~IvgE 203 (423)
.+|++. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..-. ++..+. + .++.+.++
T Consensus 131 ~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~l~~~~~ 199 (249)
T 4f3p_A 131 KVIAAK--TGTATIDWIKAHLKPKEIRQFPNIDQAYLALEAGRVDAAMHDTP---------NVLFFVNNEGKGRVKVAGA 199 (249)
T ss_dssp SEEEEE--TTSHHHHHHHHHCCCSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEEE
T ss_pred CEEEEe--CCChHHHHHHhcCCCceEEEcCCHHHHHHHHHcCCeeEEEeCcH---------HHHHHHHhCCCCceEEecC
Confidence 488875 67777777777778889999999999999999999999988632 222222 2 35888888
Q ss_pred EEEeeeeeeeecCC
Q 014547 204 VQLPVHHCLLALPG 217 (423)
Q Consensus 204 i~lpI~h~Lla~~g 217 (423)
...+...+++.+++
T Consensus 200 ~~~~~~~~~~~~k~ 213 (249)
T 4f3p_A 200 PVSGDKYGIGFPKG 213 (249)
T ss_dssp EEEEEEEEEEEETT
T ss_pred CCCCccEEEEEcCC
Confidence 88777788877765
No 19
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=92.03 E-value=1.9 Score=39.60 Aligned_cols=94 Identities=14% Similarity=0.029 Sum_probs=65.6
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc-CCcEEEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR-HRLHIVGEVQ 205 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~-~~L~IvgEi~ 205 (423)
.+|++. .|+..+....+.+++.+++.+.+.++++++|.+|++|+++..- .++..+ .+ .++.+.++..
T Consensus 154 ~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~~~~~---------~~~~~~~~~~~~l~~~~~~~ 222 (292)
T 1xt8_A 154 KTLLLN--KGTTADAYFTQNYPNIKTLKYDQNTETFAALMDKRGDALSHDN---------TLLFAWVKDHPDFKMGIKEL 222 (292)
T ss_dssp SEEEEE--TTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEEH---------HHHHHHHHHCTTEEEEEEEE
T ss_pred CEEEEe--CCCcHHHHHHHhCCCceEEEcCCHHHHHHHHHcCCccEEEecH---------HHHHHHHHhCCCeEEccccc
Confidence 488884 7888887777777888899999999999999999999988752 222222 22 2477877655
Q ss_pred Eeeee-eeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 206 LPVHH-CLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 206 lpI~h-~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
-+..+ +++.+++ +|+-..+..++|.+.
T Consensus 223 ~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~l 250 (292)
T 1xt8_A 223 GNKDVIAPAVKKG-----------DKELKEFIDNLIIKL 250 (292)
T ss_dssp EEEEEECCEEETT-----------CHHHHHHHHHHHHHH
T ss_pred ccCceeEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 55555 5665543 355566666666654
No 20
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=91.36 E-value=0.6 Score=39.80 Aligned_cols=60 Identities=17% Similarity=0.113 Sum_probs=42.9
Q ss_pred EEEE-EEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 319 TSIV-FAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 319 TSiv-f~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
++++ +.++++||.|.++++.++++|||+..+.+.+ .. ......|+++ ....|++.|
T Consensus 72 ~svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~-~~----------------~~~~~~i~~~------d~~~A~~~L 128 (144)
T 2f06_A 72 TDVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA-NN----------------NVANVVIRPS------NMDKCIEVL 128 (144)
T ss_dssp EEEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE-ET----------------TEEEEEEEES------CHHHHHHHH
T ss_pred eeEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc-cC----------------CcEEEEEEeC------CHHHHHHHH
Confidence 3444 4789999999999999999999998877764 21 1345556663 345677777
Q ss_pred Hhhc
Q 014547 398 QEFT 401 (423)
Q Consensus 398 ~~~~ 401 (423)
.+..
T Consensus 129 ~~~g 132 (144)
T 2f06_A 129 KEKK 132 (144)
T ss_dssp HHTT
T ss_pred HHcC
Confidence 6654
No 21
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=91.30 E-value=2.3 Score=37.24 Aligned_cols=93 Identities=17% Similarity=0.067 Sum_probs=62.7
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-cC-CcEEEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-RH-RLHIVGEVQ 205 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~-~L~IvgEi~ 205 (423)
.+||+. .|+..+....+ +++.+++.+.+.++++++|.+|++|+++..- .++..++ +. .+.+.+...
T Consensus 119 ~~i~v~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~---------~~~~~~~~~~~~~~~~~~~~ 186 (242)
T 3del_B 119 RSVAVQ--TGTYQEAYLQS-LSEVHIRSFDSTLEVLMEVMHGKSPVAVLEP---------SIAQVVLKDFPALSTATIDL 186 (242)
T ss_dssp SCEEEE--TTSHHHHHHHH-STTCCEEEESSHHHHHHHHHTTSSSEEEECH---------HHHHHHGGGCTTEEEEEEEC
T ss_pred CEEEEE--cCcHHHHHHHh-CCCceEEEECCHHHHHHHHHcCCCCEEEecH---------HHHHHHHHhCCCeEEecCcc
Confidence 478875 68887777666 7788999999999999999999999988752 2333232 22 477777544
Q ss_pred Eeee----eeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 206 LPVH----HCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 206 lpI~----h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
.... .+++.+++ +|+-..+..++|.+.
T Consensus 187 ~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~l 217 (242)
T 3del_B 187 PEDQWVLGYGIGVASD-----------RPALALKIEAAVQEI 217 (242)
T ss_dssp CGGGCEEEEEEEEETT-----------CHHHHHHHHHHHHHH
T ss_pred CcccccceEEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 4443 55655543 345556666666553
No 22
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=89.98 E-value=1.3 Score=39.98 Aligned_cols=79 Identities=8% Similarity=-0.028 Sum_probs=56.4
Q ss_pred cEEEEeCCCccHHHHHHhhhCCC------CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHH-Hhhc--CCc
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPN------CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYD-LLLR--HRL 198 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~------~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlD-lL~~--~~L 198 (423)
.+||+. .|+..+....+.+++ .+++.+++.++++++|.+|++|+.+..-. ++. ++.+ .++
T Consensus 138 ~~v~v~--~g~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~~~---------~~~~~~~~~~~~~ 206 (259)
T 4dz1_A 138 YSIGYP--RGMAYSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNGNLDLAFIEEP---------VYFTFKNKKKMPI 206 (259)
T ss_dssp SCEEEE--TTSTHHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHTSCCCE
T ss_pred CEEEEe--CCcHHHHHHHHhcccccccccceeEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHhccCCCce
Confidence 478884 687777777766654 68889999999999999999999988632 222 2222 356
Q ss_pred EEEEEEEEeeeeeeeecCC
Q 014547 199 HIVGEVQLPVHHCLLALPG 217 (423)
Q Consensus 199 ~IvgEi~lpI~h~Lla~~g 217 (423)
.+......+..++++.+++
T Consensus 207 ~~~~~~~~~~~~~~~~~k~ 225 (259)
T 4dz1_A 207 ESRYVFKNVDQLGIAFKKG 225 (259)
T ss_dssp EEEEEEEEEEEEEEEEETT
T ss_pred EeecccCCCceEEEEEeCC
Confidence 6666665566677777654
No 23
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=89.55 E-value=5.2 Score=35.57 Aligned_cols=78 Identities=13% Similarity=0.106 Sum_probs=47.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecC----cChHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEAS----MAEVRAQNA 393 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~----~~d~~v~~a 393 (423)
.+.|.+.-+|+||.|.++.+.|+.+|+|+..+...-.+. | ++. ..+=.||+.++-. .+...+++.
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~-~--------~~~--~~~~~F~~~~~~~~~~~~~~~~l~~~ 161 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISK-D--------KLH--SEQNQFHIAISARVDSGCNLMQLQEE 161 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC-------------------CEEEEEEEEEECTTSCHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccC-C--------ccC--CCCCEEEEEEEEeCCCCCCHHHHHHH
Confidence 345556678999999999999999999999887653321 0 000 0012566655422 233567777
Q ss_pred HHHHH-hhcCceEE
Q 014547 394 LAEVQ-EFTSFLRV 406 (423)
Q Consensus 394 L~eL~-~~~~~vrv 406 (423)
|.++. ++.-.+++
T Consensus 162 l~~~~~~~~~~~~~ 175 (192)
T 1u8s_A 162 FDALCTALDVQGSL 175 (192)
T ss_dssp HHHHHHHHTCEEEE
T ss_pred HHHHHHHhCceEEE
Confidence 77664 33444444
No 24
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11
Probab=89.35 E-value=1.5 Score=37.32 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=29.5
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeee
Q 014547 319 TSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRP 353 (423)
Q Consensus 319 TSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP 353 (423)
..|.+.++|+||.|.++.+.|+++|||+..|.--+
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~ 41 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAE 41 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEE
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEe
Confidence 34556788999999999999999999999886543
No 25
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=88.36 E-value=4.9 Score=35.48 Aligned_cols=93 Identities=20% Similarity=0.110 Sum_probs=62.4
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHH-hhcC-CcEEEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDL-LLRH-RLHIVGEVQ 205 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~~-~L~IvgEi~ 205 (423)
.+|++. .|+..+....+ +++.+++.+.+.++++++|.+|++|+++.. ..++.. +.+. ++.+.++..
T Consensus 140 ~~i~~~--~g~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~---------~~~~~~~~~~~~~~~~~~~~~ 207 (268)
T 3qax_A 140 SSVAVQ--TGTYQEHYLLS-QPGICVRSFDSTLEVIMEVRYGKSPVAVLE---------PSVGRVVLKDFPNLVATRLEL 207 (268)
T ss_dssp SCEEEE--TTSHHHHHHHT-STTCCEEEESCHHHHHHHHHTTSSSEEEEC---------HHHHHHHGGGCTTEEEEEEEC
T ss_pred CEEEEe--cCcHHHHHHHh-CCCceEEecCCHHHHHHHHHcCCCCEEEec---------HHHHHHHHHhCCCcEEecCcc
Confidence 378874 67777776655 677889999999999999999999998875 223332 2232 477777554
Q ss_pred Eeee----eeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 206 LPVH----HCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 206 lpI~----h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
-+.. ++++.+++ +|+-..+..++|.+.
T Consensus 208 ~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~l 238 (268)
T 3qax_A 208 PPECWVLGCGLGVAKD-----------RPEEIQTIQQAITDL 238 (268)
T ss_dssp CGGGCBCCEEEEECTT-----------CHHHHHHHHHHHHHH
T ss_pred CcccccccEEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 4444 55555543 455566666666553
No 26
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=88.30 E-value=5.4 Score=35.11 Aligned_cols=91 Identities=14% Similarity=0.048 Sum_probs=61.6
Q ss_pred EEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc--CCcEEEEEE-
Q 014547 129 RVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR--HRLHIVGEV- 204 (423)
Q Consensus 129 ~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~--~~L~IvgEi- 204 (423)
+||+. .|+..+....+. +.+++.+++.++++++|.+|++|+.+.... ++..+ .+ .++.++++.
T Consensus 108 ~igv~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~~~~~~~~~ 174 (232)
T 3i6v_A 108 IVAAQ--TATIQAGYIAES--GATLVEFATPEETIAAVRNGEADAVFADRD---------YLVPIVAESGGELMFVGDDV 174 (232)
T ss_dssp EEEEE--TTSHHHHHHHHS--SSEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHTTTSSEEEEEEE
T ss_pred CEEEe--cCchHHHHHHhc--CCeEEEeCCHHHHHHHHHcCCcCEEEEChH---------HHHHHHHhCCCCeEEecCCC
Confidence 88885 688777766654 678899999999999999999999887632 22222 22 468888863
Q ss_pred EEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 205 QLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 205 ~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
..+..++++.+++ +|+-..+..++|.+.
T Consensus 175 ~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 202 (232)
T 3i6v_A 175 PLGGGVGMGLRES-----------DGELRGKFDAAITSM 202 (232)
T ss_dssp ECSSCEEEEECTT-----------CHHHHHHHHHHHHHH
T ss_pred CCCCcEEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 3445566666543 345555555555553
No 27
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=88.06 E-value=2.5 Score=39.02 Aligned_cols=48 Identities=17% Similarity=0.084 Sum_probs=41.7
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++ +.|+..+....+.+++.+++.+.+.++++++|.+|++|+++++
T Consensus 165 k~v~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 212 (291)
T 2yjp_A 165 QTLLV--NKGTTADAFFTKSHPEVKLLKFDQNTETFDALKDGRGVALAHD 212 (291)
T ss_dssp SEEEE--ETTSHHHHHHHHHCTTSEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEE--ecCCcHHHHHHHhCCCceEEEeCCHHHHHHHHHcCCccEEEec
Confidence 48888 4788878777777788889999999999999999999999886
No 28
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis}
Probab=87.09 E-value=4.2 Score=39.19 Aligned_cols=127 Identities=15% Similarity=0.134 Sum_probs=76.9
Q ss_pred ccEEEEeCCCccHHHHHHhhhC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY---P-NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVG 202 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f---~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~Ivg 202 (423)
+.+++..|+ ||-+|.++..+. + +.+.+|+....+++.+|..|++|.++...- ....++...++++.+
T Consensus 130 ~~~~g~~g~-Gs~~hl~~~~l~~~~G~~~~~Vpy~g~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~La 200 (301)
T 2qpq_A 130 QVTYGSCGN-GTPQHLAGELLNVSAKTHMVHVPYKGCGPALNDVLGSQIGLAVVTAS--------SAIPFIKAGKLQALA 200 (301)
T ss_dssp CCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSSCEEEEHH--------HHHHHHHTTSEEEEE
T ss_pred ceEEecCCC-CcHHHHHHHHHHHHhCCCeEEeccCChHHHHHHHHCCCccEEEEcHH--------HHHHHHhcCCeEEEE
Confidence 456776665 888998886543 2 456789999999999999999999988632 233444445566654
Q ss_pred E----------------------EEEeeeeeeeecCCCCcCcccEE---EechhHHHHHHHHHHHcCCceeEEeccCHHH
Q 014547 203 E----------------------VQLPVHHCLLALPGVRKEYLTRV---ISHPQALSQCEHTLTKLGLNVAREAVDDTAG 257 (423)
Q Consensus 203 E----------------------i~lpI~h~Lla~~g~~l~dIk~V---ySHPqAL~QC~~fL~~~~p~~~~v~~~STA~ 257 (423)
- +.+...+.|++++|+.-+-+.++ +..-.+..+.++++++.+. ... ..+.++
T Consensus 201 v~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~~~~~~~~~~~g~--~~~-~~~~~~ 277 (301)
T 2qpq_A 201 VTSKERSALLPEVPTVAEQGVAGYELNQWHGLLVPGATPMAVRQKLYDGIAKVMQRDDVQKKLADLGY--STA-SDGPEV 277 (301)
T ss_dssp ECSSSCCTTCTTSCBSGGGTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHTC--EEE-EECHHH
T ss_pred EcCCccccccCCCCChHHhCCCceEEEeEEEEEecCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCCC--cCC-CCCHHH
Confidence 2 22334567888888643222222 1111122345566666653 232 346666
Q ss_pred HHHHHHhc
Q 014547 258 AAEYIAAN 265 (423)
Q Consensus 258 AA~~va~~ 265 (423)
..+.+.++
T Consensus 278 ~~~~~~~~ 285 (301)
T 2qpq_A 278 FQKMVETD 285 (301)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666653
No 29
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A
Probab=86.72 E-value=6.2 Score=35.63 Aligned_cols=115 Identities=14% Similarity=0.044 Sum_probs=71.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC----CcCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV----RKEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~dIk- 224 (423)
+.++++..++.++++++++|++|... ++-.+-+ .+..+. ...-++.....|+++++. +++|++
T Consensus 72 ~~~~~~~~~~~~~~~~l~~G~~D~~~-~~~~t~~----------r~~~~~-fs~p~~~~~~~l~~~~~~~~i~~~~dL~g 139 (267)
T 3mpk_A 72 DFEIIGVDTVEELIAKLRSGEADMAG-ALFVNSA----------RESFLS-FSRPYVRNGMVIVTRQDPDAPVDADHLDG 139 (267)
T ss_dssp EEEEEEESSHHHHHHHHHHTSCSEEE-EEECCGG----------GTTTEE-ECSCSEEECEEEEEESSTTSCSSGGGCTT
T ss_pred eEEEEecCCHHHHHHHHHCCCccEEe-cccCChh----------hhcceE-echhhccCceEEEEECCCCCCCCHHHHCC
Confidence 46788889999999999999999853 4332211 011111 111223344666766552 233332
Q ss_pred -EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|....-. . -..+|.+.+|+++++.+.+..++.+.+..+ +-.|+|.....+.
T Consensus 140 ~~i~v~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~l~~L~~G--rvDa~i~~~~~~~ 192 (267)
T 3mpk_A 140 RTVALVRNS-A-AIPLLQRRYPQAKVVTADNPSEAMLMVANG--QADAVVQTQISAS 192 (267)
T ss_dssp CEEEEETTC-T-HHHHHHHHCTTSEEEEESSHHHHHHHHHHT--SCSEEEEEHHHHH
T ss_pred CEEEEeCCc-h-hHHHHHHhCCCcEEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 34333221 1 245777778888999999999999999886 4678888766554
No 30
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A*
Probab=86.53 E-value=20 Score=33.43 Aligned_cols=132 Identities=19% Similarity=0.128 Sum_probs=78.0
Q ss_pred CccEEEEeCCCccHHHHHHhhhC----C--CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcE
Q 014547 126 SQLRVAYQGVPGAYSEAAAGKAY----P--NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLH 199 (423)
Q Consensus 126 ~~~~VayLGP~GTfSh~AA~~~f----~--~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~ 199 (423)
..++|||......|.-.-...+| + +++++++.+..+++++|..|++|++++... ...+......++.
T Consensus 29 ~~lrig~~~~~~p~~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~~ 101 (324)
T 3ksx_A 29 AQLRIGYQKAVSSLVLAKQHRLLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDI-------PPLFAQAAGADLL 101 (324)
T ss_dssp SEEEEEEETTCHHHHHHHHHTHHHHHCTTSEEEEEEESSHHHHHHHHHTTSCSEEEEESH-------HHHHHHHTTCCEE
T ss_pred CeEEEEecCCchhHHHHHhhCHHHHhcCCCceEEEECCCHHHHHHHHHCCCCCEEeecCH-------HHHHHHhcCCCEE
Confidence 36899999643323211122233 2 357788889999999999999999976432 2222223345777
Q ss_pred EEEEEEE-eeeeeeeecCCC---CcCccc--EEEechhH--HHHHHHHHHHcCC---ceeEEeccCHHHHHHHHHhc
Q 014547 200 IVGEVQL-PVHHCLLALPGV---RKEYLT--RVISHPQA--LSQCEHTLTKLGL---NVAREAVDDTAGAAEYIAAN 265 (423)
Q Consensus 200 IvgEi~l-pI~h~Lla~~g~---~l~dIk--~VySHPqA--L~QC~~fL~~~~p---~~~~v~~~STA~AA~~va~~ 265 (423)
+++-... +-...|+++++. +++|++ +|..-+-. ......+|++.+. +++++.. +.+++...+..+
T Consensus 102 ~v~~~~~~~~~~~lvv~~~s~I~s~~DLkGk~i~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G 177 (324)
T 3ksx_A 102 YVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYL-SPANARAAFAAG 177 (324)
T ss_dssp EEEEECCCGGGEEEEEETTCSCCSGGGGTTCEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEEC-CHHHHHHHHHTT
T ss_pred EEEEecCCCCceEEEEeCCCCCCCHHHhCCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEeC-CHHHHHHHHHcC
Confidence 7775432 234678887754 344443 56544322 2234567777653 2455554 667777777765
No 31
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp}
Probab=86.04 E-value=19 Score=34.15 Aligned_cols=138 Identities=10% Similarity=0.057 Sum_probs=81.2
Q ss_pred CccEEEEeCCCccHHHHHHhh---hCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hcCC
Q 014547 126 SQLRVAYQGVPGAYSEAAAGK---AYP----NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LRHR 197 (423)
Q Consensus 126 ~~~~VayLGP~GTfSh~AA~~---~f~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~~~ 197 (423)
..++|+|..-.+...-..|.+ +|. ++++++..+..+++++|..|++|+++.... .++... ...+
T Consensus 52 ~~l~vg~~~~~~~~p~~~a~~l~g~~~~~G~~Ve~~~~~~~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~ 123 (341)
T 3un6_A 52 QVIKIGYLPITHSANLMMTKKLLSQYNHPKYKLELVKFNNWPDLMDALNSGRIDGASTLIE--------LAMKSKQKGSN 123 (341)
T ss_dssp CEEEEEECSSGGGHHHHHHHHHHHTSSSCSSEEEEEECSSHHHHHHHHHTTSSSEEEEEHH--------HHHHHHHTTCC
T ss_pred ceEEEEEEeccccHHHHHHHHhhChHHHcCCcEEEEEcCCHHHHHHHHHcCCCCEEecchH--------HHHHHHHCCCC
Confidence 368999975333333334433 453 367889999999999999999999977543 122221 2346
Q ss_pred cEEEEEEEEeeeeeeeecCCC---CcCcc---cEEEechh---HHHHHHHHHHHcCC---ceeEEeccCHHHHHHHHHhc
Q 014547 198 LHIVGEVQLPVHHCLLALPGV---RKEYL---TRVISHPQ---ALSQCEHTLTKLGL---NVAREAVDDTAGAAEYIAAN 265 (423)
Q Consensus 198 L~IvgEi~lpI~h~Lla~~g~---~l~dI---k~VySHPq---AL~QC~~fL~~~~p---~~~~v~~~STA~AA~~va~~ 265 (423)
+.+++-.. +-...|+++++. +++|+ ++|..-.. .....+.+|++.+. +++++.. +..++...+..+
T Consensus 124 ~~~v~~~~-~~~~~ivv~~~s~I~s~~DL~kGk~i~v~~~~s~~~~~~~~~l~~~Gl~~~dv~~~~~-~~~~~~~al~~G 201 (341)
T 3un6_A 124 IKAVALGH-HEGNVIMGQKGMHLNEFNNNGDDYHFGIPHRYSTHYLLLEELRKQLKIKPGHFSYHEM-SPAEMPAALSEH 201 (341)
T ss_dssp CEEEEESC-EECEEEEESTTCCGGGCCSSSSCEEEEESCSSSHHHHHHHHHHHHTTCCTTSEEEEEC-CGGGHHHHHHTT
T ss_pred eEEEeecC-CCceEEEEcCCCCCCCHHHhCCCCEEEECCCCCHHHHHHHHHHHHcCCCHHHeEEEEc-ChHHHHHHHHcC
Confidence 77766432 334567777753 34566 46654321 11223557877654 4566655 455666666654
Q ss_pred CCCCeeEEcc
Q 014547 266 DLRDTAAIAS 275 (423)
Q Consensus 266 ~~~~~AAIaS 275 (423)
. -.|++..
T Consensus 202 ~--vDa~~~~ 209 (341)
T 3un6_A 202 R--ITGYSVA 209 (341)
T ss_dssp S--CSEEEEE
T ss_pred C--CCEEEec
Confidence 2 3455543
No 32
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=85.94 E-value=1.3 Score=39.31 Aligned_cols=48 Identities=15% Similarity=0.131 Sum_probs=41.9
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++. .|+..+....+.+++.+++.+++.++++++|.+|++|+++..
T Consensus 151 ~~i~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 198 (269)
T 4i62_A 151 KKVGAQ--KGSIQETMAKDLLQNSSLVSLPKNGNLITDLKSGQVDAVIFE 198 (269)
T ss_dssp CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSSSEEEEE
T ss_pred CeEEEe--cCchHHHHHHHhCCCCcEEecCCHHHHHHHHHcCCCCEEEeC
Confidence 588874 678777777777888899999999999999999999999876
No 33
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=85.82 E-value=1.4 Score=38.08 Aligned_cols=48 Identities=10% Similarity=0.077 Sum_probs=40.7
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+||+. .|+..+....+.+++.+++.+.+.++++++|.+|++|+++..
T Consensus 113 ~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 160 (229)
T 2y7i_A 113 KKVGLE--NGTTHQRYLQDKQQAITPVAYDSYLNAFTDLKNNRLEGVFGD 160 (229)
T ss_dssp CEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHTTSCSEEEEE
T ss_pred CEEEEe--cCCcHHHHHHHhCCCCeEEecCCHHHHHHHHHcCCcCEEEec
Confidence 488884 677777766666778889999999999999999999998886
No 34
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=85.68 E-value=2.7 Score=35.96 Aligned_cols=95 Identities=13% Similarity=0.055 Sum_probs=60.7
Q ss_pred ccEEEEeCCCccHHHHHHhhhCCC-CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHH-Hhhc---CCcEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYPN-CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYD-LLLR---HRLHIV 201 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~~-~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlD-lL~~---~~L~Iv 201 (423)
..+||+. .|+..+.-..+.+++ .+++.+.+.++++++|.+|++|+.+..-. ++. ++.+ .++.+.
T Consensus 109 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~~~---------~~~~~~~~~~~~~~~~~ 177 (227)
T 3tql_A 109 GKIIGVQ--GGTTFDSYLQDSFGNSITIQRYPSEEDALMDLTSGRVDAVVGDTP---------LIKQWLKQNGRREYVLI 177 (227)
T ss_dssp TCEEEEE--TTSHHHHHHHHHHGGGSEEEEESSHHHHHHHHTTTSSSEEESCHH---------HHHHHHHHTTCCSEEEE
T ss_pred CCEEEEE--ecccHHHHHHHhccccceEEEcCCHHHHHHHHHcCCcCEEEeChH---------HHHHHHHhCCCCCEEEe
Confidence 3488876 466666666666666 78999999999999999999999877522 222 2222 237777
Q ss_pred EEEEEeee-----eeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 202 GEVQLPVH-----HCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 202 gEi~lpI~-----h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+....... .+++.+++ +|+-..+..+.|.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~l~~~l~~l 213 (227)
T 3tql_A 178 GKPVNDPNYFGKGVGIAVKKG-----------NQALLLKLNKALAAI 213 (227)
T ss_dssp EEECCCGGGCCSCBCCEEETT-----------CHHHHHHHHHHHHHH
T ss_pred cCcccCccccccceEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 65433222 13444332 566667777777654
No 35
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=85.53 E-value=5.1 Score=36.35 Aligned_cols=94 Identities=18% Similarity=0.101 Sum_probs=60.3
Q ss_pred cEEEEeCCCccHHHHHHhhhC----CCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-c----CCc
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY----PNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-R----HRL 198 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f----~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~----~~L 198 (423)
.+||+. .|+..+....+++ .+.+++++.+.++++++|.+|++|+++.... ++..+. + ..+
T Consensus 131 ~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G~vDa~i~~~~---------~~~~~~~~~~~~~~~ 199 (287)
T 2vha_A 131 KAVVVT--SGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESGRAVAFMMDDA---------LLAGERAKAKKPDNW 199 (287)
T ss_dssp CEEEEE--TTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSCSEEEEEHH---------HHHHHHTTSSSGGGE
T ss_pred CEEEEe--CCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcCCeeEEEeChH---------HHHHHHHhCCCCCce
Confidence 488874 7888777666543 3578899999999999999999999887522 222222 2 245
Q ss_pred EEEEEEEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 199 HIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 199 ~IvgEi~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
.+++....+..+.++.+++ +|+-..+..++|.+.
T Consensus 200 ~~~~~~~~~~~~~~~~~k~-----------~~~l~~~l~~~l~~l 233 (287)
T 2vha_A 200 DIVGKPQSQEAYGCMLRKD-----------DPQFKKLMDDTIAQV 233 (287)
T ss_dssp EEESCCSCEEEEEEEECTT-----------CHHHHHHHHHHHHHH
T ss_pred EecCCccccCceEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 6665433334455555543 245556666666553
No 36
>2dvz_A BUGE, putative exported protein; periplamsic binding proteins, carboxylate binding, glutamate, transport protein; HET: GLU; 2.30A {Bordetella pertussis}
Probab=85.27 E-value=1.8 Score=42.25 Aligned_cols=127 Identities=12% Similarity=0.030 Sum_probs=76.5
Q ss_pred ccEEEEeCCCccHHHHHHhhhCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYP----NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVG 202 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~Ivg 202 (423)
+.+++..|+ ||-.|.++..+.. +.+.+|+....+++.+|..|++|.++...- ....++...++++.+
T Consensus 143 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~al~~G~vD~~~~~~~--------~~~~~i~~g~lr~La 213 (314)
T 2dvz_A 143 KYSYGSSGT-CGVLHLMGESFKMATGTDIVHVPYKGSGPAVADAVGGQIELIFDNLP--------SSMPQIQAGKLRAMA 213 (314)
T ss_dssp TCEEEESCT-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHHTSSSEEEEEHH--------HHHHHHHTTSSEEEE
T ss_pred cEEEeCCCC-CcHHHHHHHHHHHHhCCCeEEcccCCHHHHHHHHHcCCceEEEEcHH--------HHHHHHHcCCEEEEE
Confidence 456676665 8999998876532 456789999999999999999999987542 233444445566654
Q ss_pred EE----------------------EEeeeeeeeecCCCCcCcccEEE---echhHHHHHHHHHHHcCCceeEEeccCHHH
Q 014547 203 EV----------------------QLPVHHCLLALPGVRKEYLTRVI---SHPQALSQCEHTLTKLGLNVAREAVDDTAG 257 (423)
Q Consensus 203 Ei----------------------~lpI~h~Lla~~g~~l~dIk~Vy---SHPqAL~QC~~fL~~~~p~~~~v~~~STA~ 257 (423)
-. .+...+.|++++|+.-+-+.++. .--.+....++++++.+ ... ...+.++
T Consensus 214 v~~~~r~~~~pdvPt~~e~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g--~~~-~~~~~~~ 290 (314)
T 2dvz_A 214 IAWPTRIDAIKDVPTFADAGFPVLNQPVWYGLLAPKGTPMDVVNKLRDAAVVALKDPKVIKALDDQG--SAP-SGNTPEE 290 (314)
T ss_dssp EESSSCCGGGTTSCBTTTTTCGGGCCCEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHHT--EEE-CCCCHHH
T ss_pred ecCccccccCCCCCCHHhcCCCceEEeEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC--CcC-CCCCHHH
Confidence 22 23345678888886432222221 11112234555666654 222 2345566
Q ss_pred HHHHHHhc
Q 014547 258 AAEYIAAN 265 (423)
Q Consensus 258 AA~~va~~ 265 (423)
..+.+.++
T Consensus 291 ~~~~~~~~ 298 (314)
T 2dvz_A 291 FAKEIKEQ 298 (314)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666643
No 37
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=85.26 E-value=1.2 Score=39.06 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=42.5
Q ss_pred ccEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
..+||+. .|+..+....+.+++.+++.+++.++++++|.+|++|+.+..
T Consensus 125 g~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~grvDa~~~~ 173 (239)
T 3kbr_A 125 GVTAIVN--PGGTNEKFARANLKKARILVHPDNVTIFQQIVDGKADLMMTD 173 (239)
T ss_dssp TCEEEEC--TTSHHHHHHHHHCSSSEEEECCCTTTHHHHHHTTSCSEEEEE
T ss_pred CcEEEEc--CCCcHHHHHHHhCCCCceEEeCCHHHHHHHHHcCCcCEEEEc
Confidence 4588874 788888877777888899999999999999999999998875
No 38
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=85.15 E-value=3.3 Score=37.37 Aligned_cols=75 Identities=12% Similarity=0.124 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCC--CCCcccccccCCCCCCcceEEEEEEEecCcCh---HHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHR--NRPIRLVDDANVGTAKHFEYMFYIDFEASMAE---VRAQN 392 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~--~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d---~~v~~ 392 (423)
++.|.+.-+|+||-++++-+.|+.+|+|+..+...-.. .+ .+=.||+.++....+ ..+++
T Consensus 93 ~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~---------------~~~~F~m~~~~~~~~~~~~~l~~ 157 (195)
T 2nyi_A 93 EYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFA---------------GFTLFRMGSRVAFPFPLYQEVVT 157 (195)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSST---------------TCEEEEEEEEEEEEGGGHHHHHH
T ss_pred EEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccC---------------CCCeEEEEEEEEcCCCccHHHHH
Confidence 44555666899999999999999999999988765322 11 123566654432211 56677
Q ss_pred HHHHHH-hhcCceEEE
Q 014547 393 ALAEVQ-EFTSFLRVL 407 (423)
Q Consensus 393 aL~eL~-~~~~~vrvL 407 (423)
.|.++. ++.-.+++-
T Consensus 158 ~l~~~a~~l~~di~~~ 173 (195)
T 2nyi_A 158 ALSRVEEEFGVDIDLE 173 (195)
T ss_dssp HHHHHHHHHTCEEEEE
T ss_pred HHHHHHHHcCeEEEEE
Confidence 776654 444455543
No 39
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=84.57 E-value=6.2 Score=33.68 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=51.2
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc---CCcEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR---HRLHIVGE 203 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~IvgE 203 (423)
.+|++. .|+..+....+ .+.+++.+.+.++++++|.+|++|+.+.+-. ++..+ .+ ..+.+.+.
T Consensus 113 ~~i~~~--~g~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 179 (228)
T 2pyy_A 113 KVVATT--AGSTAATYLRE--HHISVLEVPKIEEAYKALQTKKADAVVFDAP---------VLLFYAANEGKGKVEIVGS 179 (228)
T ss_dssp CEEEEE--TTSHHHHHHHH--TTCEEEEESSHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHTTTTTTEEEEEE
T ss_pred CeEEEE--cCcHHHHHHHH--cCCceEecCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCCcEEEecc
Confidence 478884 56655554443 3567889999999999999999999988732 22222 22 25777776
Q ss_pred EEEeeeeeeeecCC
Q 014547 204 VQLPVHHCLLALPG 217 (423)
Q Consensus 204 i~lpI~h~Lla~~g 217 (423)
..-+..++++.+++
T Consensus 180 ~~~~~~~~~~~~~~ 193 (228)
T 2pyy_A 180 ILREESYGIILPNN 193 (228)
T ss_dssp EEEEEEECCEECTT
T ss_pred cccceeEEEEEeCC
Confidence 55455566666543
No 40
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I}
Probab=83.56 E-value=2.4 Score=41.25 Aligned_cols=127 Identities=13% Similarity=0.153 Sum_probs=75.8
Q ss_pred ccEEEEeCCCccHHHHHHhhhC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY---P-NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVG 202 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f---~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~Ivg 202 (423)
+.+++..|+ ||-+|.++..+. + +.+.+|+....+++.+|..|++|.++...- ....++...++++.+
T Consensus 139 ~~~~g~~g~-Gs~~hl~~~~l~~~~Gi~~~~Vpy~G~~~a~~aL~~G~VD~~~~~~~--------~~~~~i~~g~lr~La 209 (312)
T 2f5x_A 139 KISLANAGI-GAASHLCGTMLVEALGVNLLTIPYKGTAPAMNDLLGKQVDLMCDQTT--------NTTQQITSGKVKAYA 209 (312)
T ss_dssp GCEEEESST-TSHHHHHHHHHHHHHTCCCEEEECSSHHHHHHHHHTTSSCEEEEEHH--------HHHHHHHTTSSEEEE
T ss_pred ceEEeCCCC-CcHHHHHHHHHHHHHCCCeEEeccCChHHHHHHHHcCCccEEEechH--------HHHHHHHcCCeEEEE
Confidence 346676665 899999886543 2 456789999999999999999999988642 233444444566554
Q ss_pred E----------------------EEEeeeeeeeecCCCCcCcccEE---EechhHHHHHHHHHHHcCCceeEEecc--CH
Q 014547 203 E----------------------VQLPVHHCLLALPGVRKEYLTRV---ISHPQALSQCEHTLTKLGLNVAREAVD--DT 255 (423)
Q Consensus 203 E----------------------i~lpI~h~Lla~~g~~l~dIk~V---ySHPqAL~QC~~fL~~~~p~~~~v~~~--ST 255 (423)
- +.+...+.|++++|+.-+-+.++ +.--......++++++.+ ... ... +.
T Consensus 210 v~~~~r~~~~pdvPt~~E~G~~~~~~~~w~gl~ap~g~p~~vv~~l~~al~~~~~~p~~~~~~~~~g--~~~-~~~~~~~ 286 (312)
T 2f5x_A 210 VTSLKRVPTLPDLPTMDESGYKGFEVGIWHGMWAPKGTPKPVVDKLVKSLQAGLADPKFQERMKQLG--AEV-LTNEANP 286 (312)
T ss_dssp ECSSSCCTTSTTSCBTTTTTCTTCCCEEEEEEEEETTCCHHHHHHHHHHHHHHHTCHHHHHHHHHTT--CEE-CGGGCSH
T ss_pred EcCccchhhcCCCCCHhhcCCCCeeEEEEEEEEEcCCCCHHHHHHHHHHHHHHHcCHHHHHHHHHCC--Ccc-cCCCCCH
Confidence 2 12334567888888642222221 111112234555666654 222 234 55
Q ss_pred HHHHHHHHhc
Q 014547 256 AGAAEYIAAN 265 (423)
Q Consensus 256 A~AA~~va~~ 265 (423)
++..+.+.++
T Consensus 287 ~~~~~~~~~~ 296 (312)
T 2f5x_A 287 EALQAKVKQQ 296 (312)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666643
No 41
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=83.36 E-value=2.1 Score=38.40 Aligned_cols=94 Identities=10% Similarity=0.033 Sum_probs=59.9
Q ss_pred cEEEEeCCCccHHHHHHhh-------hCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc----
Q 014547 128 LRVAYQGVPGAYSEAAAGK-------AYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR---- 195 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~-------~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---- 195 (423)
.+||+. .|+..+....+ .+++.+++.+.+.++++++|.+|++|+.+..-. ++..+ .+
T Consensus 128 ~~i~v~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~~~---------~~~~~~~~~~~~ 196 (268)
T 3hv1_A 128 KTLGAQ--AGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSGRIDGLLIDRV---------YANYYLEKSGVL 196 (268)
T ss_dssp CCEEEE--TTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHTSCSEEEEEHH---------HHHHHHHHTTCG
T ss_pred CEEEEE--eCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcCCCCEEEeCHH---------HHHHHHHhCCCC
Confidence 478885 56666544332 233467899999999999999999999988633 22222 22
Q ss_pred CCcEEEEEEEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 196 HRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 196 ~~L~IvgEi~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
..+.+.+....+...+++.+++ +|+-..+..++|.+.
T Consensus 197 ~~l~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 233 (268)
T 3hv1_A 197 DQYNVMPAGYEGESFAVGARKV-----------DKTLIKKINQGFETL 233 (268)
T ss_dssp GGEEEEECSSCCEEECCEECTT-----------CHHHHHHHHHHHHHH
T ss_pred CceEECCCCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 3477776554455566665542 355556666666553
No 42
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0
Probab=82.38 E-value=18 Score=30.85 Aligned_cols=114 Identities=17% Similarity=0.096 Sum_probs=72.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC----cCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR----KEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~----l~dIk- 224 (423)
+.++++. ++.++++++++|++|+ +.++--+ -+ ....+. ...-+.....+|+.+++.. ++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~-~~~~~~~--------~~--r~~~~~-~s~p~~~~~~~~~~~~~~~~~~~~~dL~g 117 (234)
T 3h7m_A 51 TVEFRLG-AWSEMFSALKSGRVDV-LQGISWS--------EK--RARQID-FTPPHTIVYHAIFARRDSPPAAGLEDLRG 117 (234)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSE-EEEEECC--------HH--HHTTEE-EEEEEEEEEEEEEEESSSCCCSSGGGGTT
T ss_pred ceEEEeC-CHHHHHHHHhCCCeeE-EEeccCC--------Hh--HHhhcC-CCccccccceEEEEECCCCCCCCHHHhCC
Confidence 4567765 7899999999999998 4443211 11 111222 2334556667888876643 23332
Q ss_pred -EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|....-.. -..+|.+.+++++++.+.|..++.+++..+ +-.|+|.....+.
T Consensus 118 ~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 170 (234)
T 3h7m_A 118 RKVALHRDGI--MHEYLAERGYGKDLVLTPTPADALRLLAAG--GCDYAVVAMVPGM 170 (234)
T ss_dssp SCEEEETTSH--HHHHHHTTTCGGGEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred CEEEEEeCch--HHHHHHhcCCCceEEEeCCHHHHHHHHHcC--CceEEEeccHHHH
Confidence 333322211 246788888888888899999999999876 4667887776554
No 43
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=82.11 E-value=6.7 Score=35.97 Aligned_cols=92 Identities=17% Similarity=0.147 Sum_probs=60.2
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHH-hhcC---CcEEEE-
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDL-LLRH---RLHIVG- 202 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDl-L~~~---~L~Ivg- 202 (423)
.+|++ +.|+..+....++ +.+++.+.+..+++++|.+|++|.++++-. ++.. +.+. ++.+++
T Consensus 165 ~~v~v--~~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~i~~~~---------~~~~~~~~~~~~~l~~~~~ 231 (283)
T 2yln_A 165 VKTAQ--SLTSNYGEKAKAA--GAQLVPVDGLAQSLTLIEQKRADATLNDEL---------AVLDYLKKNPNAGVKIVWS 231 (283)
T ss_dssp SEEEE--CTTSHHHHHHHHT--TCEEEECSSHHHHHHHHHTTSCCEEEEEHH---------HHHHHHHHSTTSSEEEEEE
T ss_pred CEEEE--ecCchHHHHHHHc--CCeEEEeCCHHHHHHHHHcCCCCEEEecHH---------HHHHHHHhCCCCcEEEccC
Confidence 48886 6787777665543 567889999999999999999999988622 2222 2222 377776
Q ss_pred EEEE-eeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 203 EVQL-PVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 203 Ei~l-pI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+..- +..+.++.+++ +|+-..+..++|.+.
T Consensus 232 ~~~~~~~~~~i~~~k~-----------~~~l~~~i~~al~~l 262 (283)
T 2yln_A 232 APADEKVGSGLIVNKG-----------NDEAVAKFSTAINEL 262 (283)
T ss_dssp CCGGGCEEECCEEESS-----------CHHHHHHHHHHHHHH
T ss_pred cccCCcccEEEEEeCC-----------CHHHHHHHHHHHHHH
Confidence 4333 34455555543 355566666666654
No 44
>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}
Probab=81.93 E-value=8.1 Score=39.51 Aligned_cols=69 Identities=14% Similarity=0.333 Sum_probs=48.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
..-|++.+.|.||.|.++-+.|+++|||+....++-... .-| -.+|+++- .+.-++++++|
T Consensus 343 ~~r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~~~~~----------------~~y-~~~d~~~~--~~~~~~~~~~l 403 (416)
T 3k5p_A 343 GTRFMHVHENRPGILNSLMNVFSHHHINIASQFLQTDGE----------------VGY-LVMEADGV--GEASDAVLQEI 403 (416)
T ss_dssp SEEEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEEECSS----------------CEE-EEEEECCC--HHHHHHHHHHH
T ss_pred ceEEEEEecCCccHHHHHHHHHHHcCCCHHHHhccCCCc----------------eEE-EEEEecCC--CCCcHHHHHHH
Confidence 567888899999999999999999999999888765431 123 45688721 13335677777
Q ss_pred HhhcCceE
Q 014547 398 QEFTSFLR 405 (423)
Q Consensus 398 ~~~~~~vr 405 (423)
++.-..+|
T Consensus 404 ~~~~~~~~ 411 (416)
T 3k5p_A 404 REIPGTIR 411 (416)
T ss_dssp HTSTTEEE
T ss_pred HhCCCEEE
Confidence 75544433
No 45
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0
Probab=81.31 E-value=7.4 Score=33.17 Aligned_cols=116 Identities=9% Similarity=0.023 Sum_probs=69.8
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC----CcCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV----RKEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~dIk- 224 (423)
+.++++. ++.++++++++|++|.++-++--+-+. +..+.. ..-+......|+++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r----------~~~~~~-s~p~~~~~~~l~~~~~~~~~~~~~dL~g 109 (227)
T 3tql_A 42 VCTISNQ-PWDSLIPSLKLGKFDALFGGMNITTAR----------QKEVDF-TDPYYTNSVSFIADKNTPLTLSKQGLKG 109 (227)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSCSEECSSCBCCTTG----------GGTEEE-CSCSBCCEEEEEEETTSCCCCSTTTTTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEecCcCCHhH----------Hhheec-ccceeccceEEEEeCCCCCCCCHHHhCC
Confidence 4567775 899999999999999875433211110 011111 11223345667776653 334442
Q ss_pred -EEEechhHHHHHHHHHHHcCCc-eeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLGLN-VAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~p~-~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....-... ..+|.+.+++ +.++.+.+..++.+++..+ +-.|+|.....+..
T Consensus 110 ~~v~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 164 (227)
T 3tql_A 110 KIIGVQGGTTF--DSYLQDSFGNSITIQRYPSEEDALMDLTSG--RVDAVVGDTPLIKQ 164 (227)
T ss_dssp CEEEEETTSHH--HHHHHHHHGGGSEEEEESSHHHHHHHHTTT--SSSEEESCHHHHHH
T ss_pred CEEEEEecccH--HHHHHHhccccceEEEcCCHHHHHHHHHcC--CcCEEEeChHHHHH
Confidence 4433322221 4566666555 7788889999999998875 46788888766653
No 46
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei}
Probab=81.25 E-value=7.6 Score=37.79 Aligned_cols=67 Identities=6% Similarity=0.080 Sum_probs=48.0
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecC-----cChHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEAS-----MAEVRAQN 392 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~-----~~d~~v~~ 392 (423)
+..|.+.-+|+||-..++-+.++++|+|+..+...-.... ..|++-++++.. .+.+.+++
T Consensus 10 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~~~L~~ 74 (292)
T 3lou_A 10 QFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLS---------------ARFFVRCVFHATDDADALRVDALRR 74 (292)
T ss_dssp EEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEECC----CCHHHHHH
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCC---------------CceEEEEEEEccCcccCCCHHHHHH
Confidence 4456667789999999999999999999999988732211 134445566543 34577888
Q ss_pred HHHHHHh
Q 014547 393 ALAEVQE 399 (423)
Q Consensus 393 aL~eL~~ 399 (423)
.++++.+
T Consensus 75 ~f~~la~ 81 (292)
T 3lou_A 75 EFEPIAE 81 (292)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877754
No 47
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A*
Probab=81.25 E-value=2 Score=38.45 Aligned_cols=48 Identities=15% Similarity=0.177 Sum_probs=42.1
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|+.. .|+..+....+.++..+++.+++.++++++|..|++|+.+..
T Consensus 124 ~~i~v~--~g~~~~~~l~~~~~~~~i~~~~~~~~~~~~l~~GrvD~~~~d 171 (243)
T 4h5g_A 124 ANIAAQ--KGTVPESMVKEQLPKAQLTSLTNMGEAVNELQAGKIDAVHMD 171 (243)
T ss_dssp SEEEEE--TTSHHHHHHHHHCTTSEEEEESCHHHHHHHHHHTSCSEEEEE
T ss_pred CEEEec--CCcHHHHHHHHhcccceeEEeCCHHHHHHHHHcCCccEEEec
Confidence 478775 688888888888899999999999999999999999988764
No 48
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=80.76 E-value=2.9 Score=36.03 Aligned_cols=77 Identities=6% Similarity=-0.078 Sum_probs=50.7
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hc---CCcEEEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LR---HRLHIVGE 203 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~---~~L~IvgE 203 (423)
.+|++. .|+..+....+. +.+++.+.+.++++++|..|++|.++.... ++..+ .+ ..+.+.+.
T Consensus 117 ~~v~~~--~g~~~~~~l~~~--~~~~~~~~~~~~~~~~l~~g~vDa~~~~~~---------~~~~~~~~~~~~~~~~~~~ 183 (233)
T 1ii5_A 117 KEVAVV--RDTTAVDWANFY--QADVRETNNLTAAITLLQKKQVEAVMFDRP---------ALIYYTRQNPNLNLEVTEI 183 (233)
T ss_dssp CEEEEE--TTSHHHHHHHHT--TCEEEEESSHHHHHHHHHTTSCSEEEEEHH---------HHHHHHHHCGGGCEEECSC
T ss_pred CeEEEE--CCccHHHHHHHc--CCCeEEcCCHHHHHHHHHcCCccEEEeCHH---------HHHHHHHhCCCCcEEEeCc
Confidence 488875 566666555443 567889999999999999999999887632 22221 12 24666654
Q ss_pred EEEeeeeeeeecCC
Q 014547 204 VQLPVHHCLLALPG 217 (423)
Q Consensus 204 i~lpI~h~Lla~~g 217 (423)
...+..++++.+++
T Consensus 184 ~~~~~~~~~~~~k~ 197 (233)
T 1ii5_A 184 RVSLEPYGFVLKEN 197 (233)
T ss_dssp CSEEEEEEEEEETT
T ss_pred cccccceEEEEcCC
Confidence 44445566666654
No 49
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae}
Probab=80.42 E-value=8.2 Score=34.04 Aligned_cols=116 Identities=15% Similarity=0.116 Sum_probs=71.3
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCC--C---CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPG--V---RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g--~---~l~dIk 224 (423)
+.++++. +..++++++++|++|+++.++..+ .+- ...+.. ..-+......++++++ . +++|++
T Consensus 82 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~-----~~r-----~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 149 (269)
T 4i62_A 82 ELELSPM-SFDNVLASVQSGKADLAISGVSKT-----DER-----SKVFDF-STPYYTAKNKLIVKKSDLATYQSVNDLA 149 (269)
T ss_dssp EEEEEEC-CHHHHHHHHHTTSCSEECSSCBCC-----HHH-----HTTEEE-CSCCEECCEEEEEEGGGTTTCSSGGGGC
T ss_pred ceEEEEc-CHHHHHHHHhCCCccEEecCCcCC-----HhH-----hhceec-ccchhhcceEEEEECCccccccCHHHhC
Confidence 4678888 999999999999999875432211 111 111111 1122334456666554 2 334443
Q ss_pred --EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 --RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 --~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....-.. ...++.+..++..++.+.+..++.+.+..+ +-.|++.....+..
T Consensus 150 g~~i~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 204 (269)
T 4i62_A 150 QKKVGAQKGSI--QETMAKDLLQNSSLVSLPKNGNLITDLKSG--QVDAVIFEEPVAKG 204 (269)
T ss_dssp -CEEEEETTSH--HHHHHHHHCTTSEEEEESCHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CCeEEEecCch--HHHHHHHhCCCCcEEecCCHHHHHHHHHcC--CCCEEEeChHHHHH
Confidence 454433222 356777777778888899999999999876 46777777665543
No 50
>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*
Probab=80.30 E-value=5.3 Score=40.48 Aligned_cols=63 Identities=19% Similarity=0.194 Sum_probs=45.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
...|++...|+||.+.++-+.|.++|||+......- ++ ..-+..+|++... +.-++++++|
T Consensus 331 ~~rl~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r-~g----------------~~A~~vidvD~~~--~~~~~~l~~l 391 (404)
T 1sc6_A 331 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT-SA----------------QMGYVVIDIEADE--DVAEKALQAM 391 (404)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE-CS----------------SEEEEEEEEECCH--HHHHHHHHHH
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC-CC----------------CEEEEEEEcCCCC--CCCHHHHHHH
Confidence 345888889999999999999999999998765543 32 1345567998741 1224677777
Q ss_pred Hh
Q 014547 398 QE 399 (423)
Q Consensus 398 ~~ 399 (423)
++
T Consensus 392 ~~ 393 (404)
T 1sc6_A 392 KA 393 (404)
T ss_dssp HT
T ss_pred hc
Confidence 75
No 51
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=80.15 E-value=3.5 Score=35.89 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=39.8
Q ss_pred cEEEEeCCCccHHHHHHhhhC--CCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY--PNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f--~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+||+. .|+..+....+.+ ++.+++.+.+.++++++|.+|++|+++..
T Consensus 112 ~~v~~~--~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~~~~ 161 (239)
T 1lst_A 112 KHVGVL--QGSTQEAYANDNWRTKGVDVVAYANQDLIYSDLTAGRLDAALQD 161 (239)
T ss_dssp CEEEEE--TTSHHHHHHHHHTGGGTCEEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CEEEEE--cCccHHHHHHHhcccCCCeEEEcCCHHHHHHHHHcCCCCEEEeC
Confidence 478885 7887777666666 46788999999999999999999998876
No 52
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A
Probab=80.04 E-value=15 Score=31.14 Aligned_cols=116 Identities=10% Similarity=0.009 Sum_probs=69.4
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC----CcCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV----RKEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~dIk- 224 (423)
+.++++. ++.++++++++|++|+++-.+.-+ .+-.+ .+.... -+.....+|+++++. +++|++
T Consensus 42 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~-----~~r~~-----~~~~~~-p~~~~~~~~~~~~~~~~i~~~~dL~g 109 (226)
T 1wdn_A 42 DYELKPM-DFSGIIPALQTKNVDLALAGITIT-----DERKK-----AIDFSD-GYYKSGLLVMVKANNNDVKSVKDLDG 109 (226)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSSSEEEEEEECC-----HHHHT-----TSEECS-CCEEEEEEEEEETTCCSCSSSTTTTT
T ss_pred EEEEEEC-CHHHHHHHHhCCCCCEEEEcCcCC-----HHHhC-----cccccc-chhcCceEEEEeCCCCCCCCHHHhCC
Confidence 4566766 789999999999999987543311 11111 111111 122334566666543 233432
Q ss_pred -EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....-. . ...+|.++.++..++.+.+..++.+++..+ +-.|++.....+..
T Consensus 110 ~~i~~~~g~-~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 163 (226)
T 1wdn_A 110 KVVAVKSGT-G-SVDYAKANIKTKDLRQFPNIDNAYMELGTN--RADAVLHDTPNILY 163 (226)
T ss_dssp CEEEEETTS-H-HHHHHHHHCCCSEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CEEEEEcCC-c-HHHHHHHhCCCceEEEeCCHHHHHHHHHcC--CcCEEEeCcHHHHH
Confidence 45443222 2 245777776677888888999999998876 45678877665543
No 53
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A
Probab=79.53 E-value=43 Score=31.79 Aligned_cols=172 Identities=11% Similarity=-0.015 Sum_probs=93.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhC------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeecc---------------
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY------PNCEAIPCDQ-----FEVAFQAVELWIADRAVLPVEN--------------- 180 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f------~~~e~vp~~S-----f~~Vf~aV~~g~~d~gVVPIEN--------------- 180 (423)
.+|+++..|+|+..++++.++- +..++..+.+ -.+++++|..|.+|.+++..-+
T Consensus 2 ~lk~a~~~~~~~~~~~~~~~fa~~v~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~p~~~~~~lPf 81 (316)
T 2vpn_A 2 NWRYAHEEYEGDVQDVFAQAFKGYVEDNSDHTVQVYRFGELGESDDIMEQTQNGILQFVNQSPGFTGSLIPSAQIFFIPY 81 (316)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHSSSCEEEEECTTCC----CHHHHHHTTSCSEEEECHHHHHHHSGGGGGGGSTT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHhhCCCeEEEEEecCCCCCChHHHHHHHhCCCceEEeecchhhhccCcchhheecCe
Confidence 3688999999998888876541 2355544444 3789999999999999876211
Q ss_pred ---C-C-------CC--chHH-HHHHhhcCCcEEEEEEEEeeeeeeeecCC-CCcCccc--EEEechhHHHHHHHHHHHc
Q 014547 181 ---S-L-------GG--SIHR-NYDLLLRHRLHIVGEVQLPVHHCLLALPG-VRKEYLT--RVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 181 ---S-~-------~G--~V~~-tlDlL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~dIk--~VySHPqAL~QC~~fL~~~ 243 (423)
+ . .| .+.+ ..+.+.+.++++.+-......+ +..++. .+++|++ +|..-+-.. -.++++..
T Consensus 82 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~l~~~~~g~~~-~~~~~pI~s~~DlkG~KiR~~~~~~--~~~~~~~l 158 (316)
T 2vpn_A 82 LMPTDMDTVLEFFDESKAINEMFPKLYAEHGLELLKMYPEGEMV-VTADEPITSPEDFDNKKIRTMTNPL--LAETYKAF 158 (316)
T ss_dssp CSCSSHHHHHHHHHHCHHHHTHHHHHHHTTTEEEEEEEEEEEEE-EEESSCCCSGGGGTTCEEEECSCHH--HHHHHHHH
T ss_pred ecCCHHHHHHHHHcCchHHHHHHHHHHHHcCCEEEEeecCCceE-EecCCCCCChHHhCCCEEEeCCCHH--HHHHHHHc
Confidence 0 0 11 1111 1223445788888765444333 334333 3456666 565533222 25778888
Q ss_pred CCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCccCCCCCe-eEEEEEee
Q 014547 244 GLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNV-TRFVMLAR 306 (423)
Q Consensus 244 ~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nIqD~~~N~-TRFlVLsr 306 (423)
+......+. ++.-..+..+ .-.|+..+.......++.=+.+.+.+..+.. +-++++.+
T Consensus 159 Ga~pv~m~~---~Evy~ALq~G--~VDg~~~~~~~~~~~~~~ev~~y~~~~~~~~~~~~~~~n~ 217 (316)
T 2vpn_A 159 GATPTPLPW---GEVYGGLQTG--IIDGQENPIFWIESGGLYEVSPNLTFTSHGWFTTAMMANQ 217 (316)
T ss_dssp TCEEEECCG---GGHHHHHHHT--SCSEEEEEHHHHHHTTGGGTCCEEEECCCCEEEEEEEEEH
T ss_pred CCeeeecCH---HHHHHHHHcC--CcceeeCCHHHHHhcCHHHhhhhheeccccccceEEEEcH
Confidence 754443333 3334444444 2456666655554455544444444333333 34445544
No 54
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5
Probab=79.28 E-value=5.9 Score=35.22 Aligned_cols=34 Identities=6% Similarity=-0.015 Sum_probs=28.1
Q ss_pred EEEEEEeCCCccHHHHHHHHHHhCCceeeeeeee
Q 014547 319 TSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESR 352 (423)
Q Consensus 319 TSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESR 352 (423)
..|.+.-+|+||.+.++-+.|+.+|+|+..+.--
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~ 40 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIA 40 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeee
Confidence 3455567899999999999999999999875543
No 55
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=79.20 E-value=43 Score=31.66 Aligned_cols=118 Identities=11% Similarity=-0.043 Sum_probs=68.5
Q ss_pred CCce--eecCC-HHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCcc
Q 014547 150 NCEA--IPCDQ-FEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYL 223 (423)
Q Consensus 150 ~~e~--vp~~S-f~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dI 223 (423)
++++ +...+ ..+++++|..|++|+++.... ......-...++.+++.....-...|+++++.. ++|+
T Consensus 45 ~v~~~~~~~~g~~~~~~~al~~G~~D~~~~~~~-------~~~~~~~~g~~~~~v~~~~~~~~~~lvv~~~s~i~s~~DL 117 (348)
T 3uif_A 45 KVEWVPAAMASVGPVINEGFASGKIDFGIYGDL-------PPIILNASKPTVQLVAPWGTTSNSYLVVPKNSTAKSIKDL 117 (348)
T ss_dssp EEEEEEECTTCHHHHHHHHHHTTCCCEEEEESH-------HHHHHHHHSCCEEEEEECCCCCCCEEEEETTCCCCSGGGG
T ss_pred eEEEEecccCCCcHHHHHHHHcCCCCEEecCcH-------HHHHHHhCCCCEEEEEeccCCCceEEEEECCCCCCCHHHc
Confidence 3566 45554 678899999999999985432 222222234577777765555556788876543 3444
Q ss_pred c--EEEechh--HHHHHHHHHHHcCCc---eeEEeccCHHHHHHHHHhcCCCCeeEEccHH
Q 014547 224 T--RVISHPQ--ALSQCEHTLTKLGLN---VAREAVDDTAGAAEYIAANDLRDTAAIASAR 277 (423)
Q Consensus 224 k--~VySHPq--AL~QC~~fL~~~~p~---~~~v~~~STA~AA~~va~~~~~~~AAIaS~~ 277 (423)
+ +|...+- .......+|++.+.. ++++.. +.+++...+..+. -.|++....
T Consensus 118 kGk~I~v~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~--vDa~~~~~~ 175 (348)
T 3uif_A 118 KGKKIALHRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGT--VDGFFSLFD 175 (348)
T ss_dssp TTSEEEECTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTS--SSEEEESTT
T ss_pred CCCEEEecCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCC--CCEEEechH
Confidence 3 5654322 223356777776532 455544 5667777777652 345555443
No 56
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=78.87 E-value=35 Score=32.17 Aligned_cols=170 Identities=9% Similarity=-0.007 Sum_probs=94.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeccCCCCc--------
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY--------PNCEAIPCDQ-----FEVAFQAVELWIADRAVLPVENSLGGS-------- 185 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f--------~~~e~vp~~S-----f~~Vf~aV~~g~~d~gVVPIENS~~G~-------- 185 (423)
.+|++..-|+|+..++++.++- +..++..+.+ -.+++++|..|.+|++++..-+ +.|.
T Consensus 2 ~lk~~~~~~~~~~~~~~~~~fa~~v~~~s~G~i~i~~~~~g~Lg~~~~~~~~v~~G~id~~~~~~~~-~~~~~p~~~~~~ 80 (301)
T 2pfz_A 2 KWDLPTAYPASNLHVENLTQFVKDVDSLSGGKLKITLHNNASLYKAPEIKRAVQGNQAQIGEILLTN-FANEDPVYELDG 80 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHHTTSCEEEEECTTSSSCGGGHHHHHHTTSSSEEEEEGGG-GTTTCGGGTGGG
T ss_pred eeEecccCCCCchhhHHHHHHHHHHHHHcCCeEEEEEccCcccCChHHHHHHHHCCceeeEechhhh-ccccCchhhhhc
Confidence 4689999999988888876532 2345444433 3789999999999999886321 1010
Q ss_pred -----------------hHHHH-HHhhcCCcEEEEEEEEeeeeeeeecCC-CCcCccc--EEEechhHHHHHHHHHHHcC
Q 014547 186 -----------------IHRNY-DLLLRHRLHIVGEVQLPVHHCLLALPG-VRKEYLT--RVISHPQALSQCEHTLTKLG 244 (423)
Q Consensus 186 -----------------V~~tl-DlL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~dIk--~VySHPqAL~QC~~fL~~~~ 244 (423)
..+.+ +.+.+.++++.+-...+-.+ +..++. .+++|++ +|..- ... -..+++..+
T Consensus 81 lPf~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 156 (301)
T 2pfz_A 81 LPFLATGYDASFKLYQAQKPFLEKKLASQGMMLLYSVAWPPQG-IFANRDIKQVSDMKGLKWRAY-SPV--TAKIAELVG 156 (301)
T ss_dssp STTSCCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEES-SHH--HHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEecccCCcc-eeeCCCCCChHHhcCCEEecC-Chh--HHHHHHHcC
Confidence 11112 13345788888754444333 444433 2455665 45542 222 357888876
Q ss_pred CceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCccCCCCC-eeEEEEEee
Q 014547 245 LNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSN-VTRFVMLAR 306 (423)
Q Consensus 245 p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nIqD~~~N-~TRFlVLsr 306 (423)
. ..++. +.++....+..+ .-.|+..+.......++.=+.+.+...... .+-++++.+
T Consensus 157 a--~pv~~-~~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 214 (301)
T 2pfz_A 157 A--QPVTV-QQAELAQAMATG--VIDSYMSSGSTGFDTKTYEYIKKFYDTEAWLPKNAVLVNK 214 (301)
T ss_dssp C--EEEEC-CGGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEEECCCCCCCEEEEEEEH
T ss_pred C--cceec-CHHHHHHHHhcC--eeeEEecCccccccccHHHHhhhheecccccceeEEEEcH
Confidence 4 44443 344444445544 245667776655555664444444332222 333444444
No 57
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*
Probab=78.75 E-value=7.9 Score=40.37 Aligned_cols=72 Identities=8% Similarity=0.105 Sum_probs=49.7
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeee-eeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIES-RPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAE 396 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIES-RP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~e 396 (423)
-..|++..+|+||.+.++.+.+.++|||+..+.- |..++ .+-...|+++....++ +.+.|++
T Consensus 454 ~~~l~v~~~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~----------------~~a~~~i~vd~~~~~~-~l~~l~~ 516 (529)
T 1ygy_A 454 GINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEG----------------PGATILLRLDQDVPDD-VRTAIAA 516 (529)
T ss_dssp SEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSS----------------SCEEEEEEESSCCCHH-HHHHHHH
T ss_pred ccEEEEEcCCCCchHHHHHHHHHhcCCCeeeEEEecCCCC----------------CEEEEEEEECCCCCHH-HHHHHhc
Confidence 4567788899999999999999999999998764 33322 2567788888766544 3333444
Q ss_pred HHhhcCceEEE
Q 014547 397 VQEFTSFLRVL 407 (423)
Q Consensus 397 L~~~~~~vrvL 407 (423)
+... ..++++
T Consensus 517 ~~~i-~~v~~v 526 (529)
T 1ygy_A 517 AVDA-YKLEVV 526 (529)
T ss_dssp HHTE-EEEEEE
T ss_pred CCCc-cEEEEE
Confidence 4333 345443
No 58
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=78.66 E-value=4.1 Score=35.72 Aligned_cols=48 Identities=13% Similarity=0.091 Sum_probs=36.9
Q ss_pred cEEEEeCCCccHHHHHHhhhCC----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYP----NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++. .|+..+....+++. +.+++.+.+.++++++|..|++|.++.+
T Consensus 149 ~~i~~~--~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g~vDa~~~~ 200 (259)
T 2v25_A 149 ANIGVA--QAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVD 200 (259)
T ss_dssp CEEEEE--TTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTTSSSEEEEE
T ss_pred CEEEEe--cCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcCCCcEEEec
Confidence 478885 57666665555443 2367899999999999999999999885
No 59
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei}
Probab=77.62 E-value=17 Score=31.87 Aligned_cols=116 Identities=9% Similarity=-0.003 Sum_probs=70.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC----CcCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV----RKEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~----~l~dIk- 224 (423)
+.++++. ++.++++++++|++|.++-++.-+- +-.+ .+... .-+......|+++++. +++|++
T Consensus 63 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~-----~r~~-----~~~~s-~p~~~~~~~~~~~~~~~~i~~~~dL~g 130 (249)
T 4f3p_A 63 TYKIQPM-DFAGLIPALQTQNIDVALSGMTIKE-----ERRK-----AIDFS-DPYYDSGLAAMVQANNTTIKSIDDLNG 130 (249)
T ss_dssp CEEEEEE-CGGGHHHHHHTTSCSEEEEEEECCH-----HHHT-----TEEEC-SCCEEEEEEEEEETTCCSCCSSGGGTT
T ss_pred ceEEEec-CHHHHHHHHHCCCCCEEEeccccCH-----HHHc-----Cccee-cceeeccEEEEEECCCCCcCChHHhCC
Confidence 4667775 6799999999999999765443211 1111 11111 1223345566666543 233332
Q ss_pred -EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|..-. .... ..||.+..++..++.+.|..++.+++..+ +-.|+|+....+..
T Consensus 131 ~~i~v~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 184 (249)
T 4f3p_A 131 KVIAAKT-GTAT-IDWIKAHLKPKEIRQFPNIDQAYLALEAG--RVDAAMHDTPNVLF 184 (249)
T ss_dssp SEEEEET-TSHH-HHHHHHHCCCSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred CEEEEeC-CChH-HHHHHhcCCCceEEEcCCHHHHHHHHHcC--CeeEEEeCcHHHHH
Confidence 443322 2222 45777777788888999999999999876 46788887765543
No 60
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=77.26 E-value=4.1 Score=36.08 Aligned_cols=48 Identities=19% Similarity=0.122 Sum_probs=38.9
Q ss_pred cEEEEeCCCccHHHHHHhhh-CCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKA-YPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~-f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+||+ +.|+..+....+. +++.+++.+.+.++++++|.+|++|+++..
T Consensus 125 ~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~grvDa~i~~ 173 (257)
T 2q88_A 125 AKIGA--PGGGTEEKLALEAGVPRDRVIVVPDGQSGLKMLQDGRIDVYSLP 173 (257)
T ss_dssp CCEEE--CTTSHHHHHHHHTTCCGGGEEECSSHHHHHHHHHHTSCSEEEEE
T ss_pred ceEEE--ECCcccHHHHHhcCCCCceEEEcCCHHHHHHHHHcCCCcEEEcC
Confidence 47887 5787777666554 456688999999999999999999998876
No 61
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0
Probab=77.24 E-value=9 Score=33.43 Aligned_cols=117 Identities=9% Similarity=0.024 Sum_probs=70.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dIk-- 224 (423)
+.++++. ++.++++++++|++|+++.++--+-+.. ..+. ...-+......|+++++.. ++|++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~~~r~----------~~~~-fs~p~~~~~~~~~~~~~~~~~~~~dL~g~ 111 (237)
T 3kzg_A 44 TCTFEAY-IFDDLFPALKNREVDLVIASMIITDERK----------KHFI-FSLPYMESNSQYITTVDSKISTFDDLHGK 111 (237)
T ss_dssp EEEEEEE-CGGGHHHHHHTTSSSEECSSCBCCTTGG----------GTCE-ECCCSBCCEEEEEEETTCSCCSGGGGTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEEccccChhHh----------ccce-eeeeeeecceEEEEECCCCCCCHHHhCCC
Confidence 4567777 7899999999999998765433222110 1111 1112334456677776532 33332
Q ss_pred EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHc
Q 014547 225 RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELY 282 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelY 282 (423)
+|.... .-.. ..++.+..+++.++.+.+..++.+++..+ +-.|+|.....+..+
T Consensus 112 ~i~~~~-g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 165 (237)
T 3kzg_A 112 KIGVRK-GTPY-ARQVLSENRNNQVIFYELIQDMLLGLSNN--QVDASLMDYEAAKYW 165 (237)
T ss_dssp EEEEET-TSTH-HHHHHHTCSSCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHHH
T ss_pred EEEEec-CCHH-HHHHHHhCCCCcEEEeCCHHHHHHHHHcC--CCCEEEeCcHHHHHH
Confidence 443322 2222 24555566777888899999999999876 466788777665543
No 62
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0
Probab=77.09 E-value=12 Score=32.60 Aligned_cols=115 Identities=12% Similarity=0.092 Sum_probs=71.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEE--eeeeeeeecCCC---CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQL--PVHHCLLALPGV---RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l--pI~h~Lla~~g~---~l~dIk 224 (423)
+.++++. ++.+++.++++|++|+++-.+-- +-+ ....+.. .-++ .....++++++. +++|++
T Consensus 51 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~--------~~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~i~~~~dL~ 117 (242)
T 3del_B 51 TLDVREF-SFDALILNLKQHRIDAVITGMSI--------TPS--RLKEILM--IPYYGEEIKHLVLVFKGENKHPLPLTQ 117 (242)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSSSEECSSBBC--------CHH--HHTTEEE--EEEEEEEESEEEEEEESCCSCCCCGGG
T ss_pred ceEEEEc-CHHHHHHHHhCCCcCEEEecCcC--------CHH--HHhcccc--eeeeecCCceEEEEeCCCCCCCHHHhC
Confidence 4678888 89999999999999987522211 111 1122222 4444 556778877653 234442
Q ss_pred --EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHc
Q 014547 225 --RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELY 282 (423)
Q Consensus 225 --~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelY 282 (423)
+|... ..... ..++.+ .++..++.+.+..++.+++..+ +-.|+|.....+..+
T Consensus 118 g~~i~v~-~g~~~-~~~l~~-~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~~~ 172 (242)
T 3del_B 118 YRSVAVQ-TGTYQ-EAYLQS-LSEVHIRSFDSTLEVLMEVMHG--KSPVAVLEPSIAQVV 172 (242)
T ss_dssp SSCEEEE-TTSHH-HHHHHH-STTCCEEEESSHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCEEEEE-cCcHH-HHHHHh-CCCceEEEECCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 34332 22222 345555 5677888889999999999876 467888887766543
No 63
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris}
Probab=77.08 E-value=14 Score=35.91 Aligned_cols=67 Identities=4% Similarity=0.091 Sum_probs=47.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEec---CcChHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEA---SMAEVRAQNAL 394 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg---~~~d~~v~~aL 394 (423)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.... ..|++-++++. ..+...+++++
T Consensus 6 ~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~~L~~~f 70 (288)
T 3obi_A 6 QYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTES---------------GHFFMRVVFNAAAKVIPLASLRTGF 70 (288)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTT---------------TEEEEEEEEEESSCCCCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCC---------------CceEEEEEEEcCCCCCCHHHHHHHH
Confidence 3456667789999999999999999999999988633221 13333344443 23457888888
Q ss_pred HHHHh
Q 014547 395 AEVQE 399 (423)
Q Consensus 395 ~eL~~ 399 (423)
++|.+
T Consensus 71 ~~la~ 75 (288)
T 3obi_A 71 GVIAA 75 (288)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88764
No 64
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida}
Probab=76.91 E-value=9.9 Score=36.84 Aligned_cols=67 Identities=15% Similarity=0.082 Sum_probs=47.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEec--CcChHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEA--SMAEVRAQNALA 395 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg--~~~d~~v~~aL~ 395 (423)
+..|.+.-+|+||-..++-+.|+++|+|+..+...-.... ..|+.-++++. ..+...++++++
T Consensus 8 ~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~~L~~~f~ 72 (286)
T 3n0v_A 8 TWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQS---------------GRFFIRVEFRQPDDFDEAGFRAGLA 72 (286)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCSSCCHHHHHHHHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCC---------------CeeEEEEEEecCCCCCHHHHHHHHH
Confidence 3456667789999999999999999999999988732221 13333445543 234577888888
Q ss_pred HHHh
Q 014547 396 EVQE 399 (423)
Q Consensus 396 eL~~ 399 (423)
+|.+
T Consensus 73 ~la~ 76 (286)
T 3n0v_A 73 ERSE 76 (286)
T ss_dssp HHHG
T ss_pred HHHH
Confidence 7754
No 65
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa}
Probab=76.52 E-value=1.8 Score=37.87 Aligned_cols=116 Identities=12% Similarity=-0.003 Sum_probs=70.6
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC-----CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV-----RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~dIk 224 (423)
+.++++. ++.++++++++|++|.++.++.-+ .+ -. ..+.... -++.....++++++. +++|++
T Consensus 55 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t-----~~-r~----~~~~fs~-p~~~~~~~~~~~~~~~~~i~~~~dL~ 122 (239)
T 3kbr_A 55 KLVVVPT-SWPNLMRDFADDRFDIAMSGISIN-----LE-RQ----RQAYFSI-PYLRDGKTPITLCSEEARFQTLEQID 122 (239)
T ss_dssp EEEEEEC-CTTTHHHHHHTTCCSEECSSCBCC-----HH-HH----TTCEECS-CSEEECEEEEEEGGGGGGGSSHHHHS
T ss_pred ceEEEEe-CHHHHHHHHHCCCcCEEEeCCcCC-----HH-Hc----Cccccch-HHhccCcEEEEECCcccccCCHHHhc
Confidence 4567777 899999999999999876543211 11 11 1111111 122234455555432 344444
Q ss_pred ----EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 ----RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ----~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....-.. -..+|.+..++..++.+.|..++.+++..+ +-.|+|.....+..
T Consensus 123 ~~g~~v~~~~g~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 179 (239)
T 3kbr_A 123 QPGVTAIVNPGGT--NEKFARANLKKARILVHPDNVTIFQQIVDG--KADLMMTDAIEARL 179 (239)
T ss_dssp STTCEEEECTTSH--HHHHHHHHCSSSEEEECCCTTTHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCCcEEEEcCCCc--HHHHHHHhCCCCceEEeCCHHHHHHHHHcC--CcCEEEEchHHHHH
Confidence 554432221 245777777888888899999999999876 46788887766654
No 66
>4ab5_A Transcriptional regulator, LYSR family; transcription factors; 2.51A {Neisseria meningitidis serogroup B} PDB: 4ab6_A
Probab=76.29 E-value=10 Score=32.01 Aligned_cols=138 Identities=16% Similarity=0.088 Sum_probs=73.3
Q ss_pred CccEEEEeCCCccH-HHHHHh---hhCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEE
Q 014547 126 SQLRVAYQGVPGAY-SEAAAG---KAYPNCEAIP-CDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHI 200 (423)
Q Consensus 126 ~~~~VayLGP~GTf-Sh~AA~---~~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 200 (423)
+..+||+...-+.+ --.... +.+|+.++.. ..+-+++.+.|.+|++|+|++.-... ..+ +
T Consensus 8 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~i~i~~~~~~~~~~~l~~g~~Di~i~~~~~~-------------~~~--~ 72 (222)
T 4ab5_A 8 GELRIAVECHTCFDWLMPAMGEFRPMWPQVELDIVSGFQADPVGLLLQHRADLAIVSEAEK-------------QNG--I 72 (222)
T ss_dssp EEEEEECCCTTTHHHHHHHHHHHHHHSTTEEEEEECCCCSCTHHHHHTTSCSEEEESCCCC-------------CTT--E
T ss_pred ceEEEEEehHHHHHHHHHHHHHHHHHCCCcEEEEecCCHHHHHHHHHcCCcCEEEecCCCC-------------cCC--e
Confidence 35677765443332 111121 2367765533 23446789999999999999853211 111 2
Q ss_pred EEEEEEeeeeeeeecCCC--------CcCcc---cEEEec-h-hHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCC
Q 014547 201 VGEVQLPVHHCLLALPGV--------RKEYL---TRVISH-P-QALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDL 267 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g~--------~l~dI---k~VySH-P-qAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~ 267 (423)
..+......+++++.++- +++++ .-|.-. . ....+..+++.+++.......++|...+.++++.+
T Consensus 73 ~~~~l~~~~~~~v~~~~~pl~~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g-- 150 (222)
T 4ab5_A 73 SFQPLFAYEMVGICAPDHPLAAKNVWTAEDFIGETLITYPVPDEMLDLPKKILIPKNINPPRRHSELTIAIIQLVASR-- 150 (222)
T ss_dssp EEEEEEEEEEEEEECTTSGGGGCSEECGGGGSSSCEEECSSCGGGCHHHHHTTGGGTCCCCEEECSCHHHHHHHHHTT--
T ss_pred EEEEeecCcEEEEecCCChhhccCCcCHHHHcCCCEEecCCCcHHHHHHHHHHHHcCCCCCeEecCCHHHHHHHHHcC--
Confidence 333444455666665543 22333 233321 1 22244556666654322255677777777777765
Q ss_pred CCeeEEccHHHHHH
Q 014547 268 RDTAAIASARAAEL 281 (423)
Q Consensus 268 ~~~AAIaS~~AAel 281 (423)
...+|.+...++.
T Consensus 151 -~gi~~~p~~~~~~ 163 (222)
T 4ab5_A 151 -RGIAALPYWTVMP 163 (222)
T ss_dssp -SCBEEEEHHHHHH
T ss_pred -CeEEEcchHHhHH
Confidence 4566777665543
No 67
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV}
Probab=76.05 E-value=16 Score=35.70 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=50.5
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecC---cChHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEAS---MAEVRAQNAL 394 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~---~~d~~v~~aL 394 (423)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.... ..|+.-++++.. .+.+.+++++
T Consensus 22 ~~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~---------------g~FfMr~~~~~~~~~~~~~~L~~~l 86 (302)
T 3o1l_A 22 TFRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLS---------------GWFFMRHEIRADTLPFDLDGFREAF 86 (302)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTT---------------TEEEEEEEEEGGGSSSCHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCC---------------CeEEEEEEEecCCCCCCHHHHHHHH
Confidence 4456667789999999999999999999999888743221 134444555542 3457788888
Q ss_pred HHHHh-hcCceEE
Q 014547 395 AEVQE-FTSFLRV 406 (423)
Q Consensus 395 ~eL~~-~~~~vrv 406 (423)
+++.+ +.-.+++
T Consensus 87 ~~la~~l~m~~~l 99 (302)
T 3o1l_A 87 TPIAEEFSMDWRI 99 (302)
T ss_dssp HHHHHHHTCEEEE
T ss_pred HHHHHHhCCeeee
Confidence 87754 3333444
No 68
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=75.94 E-value=4.2 Score=36.70 Aligned_cols=48 Identities=15% Similarity=0.027 Sum_probs=39.5
Q ss_pred cEEEEeCCCccHHHHHHhhhCC-CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYP-NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++. .|+..+....+.++ +.+++.+.+.++++++|.+|++|+++.+
T Consensus 148 ~~i~~~--~g~~~~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G~vDa~~~~ 196 (272)
T 2pvu_A 148 KTIGVQ--NATTGQEAAEKLFGKGPHIKKFETTVVAIMELLNGGVDAVITD 196 (272)
T ss_dssp SCEEEE--TTSHHHHHHHHHHCSSTTEEEESSHHHHHHHHHTTSCSEEEEE
T ss_pred CeEEEE--cCchHHHHHHHhcCCCCeEEEcCCHHHHHHHHHcCCccEEEeC
Confidence 478885 47777766666656 6778899999999999999999999886
No 69
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0
Probab=75.26 E-value=8.4 Score=33.80 Aligned_cols=115 Identities=16% Similarity=0.109 Sum_probs=69.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCC--C---CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPG--V---RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g--~---~l~dIk 224 (423)
..++++. ++..+++++++|++|.++-++-.+ -+. ...+.... -++.....++++++ . +++|++
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~r--~~~~~~s~-p~~~~~~~~~~~~~~~~~i~~~~dL~ 112 (245)
T 3k4u_A 45 KLKLVPT-SWDGLIPGLVTEKFDIIISGMTIS--------QER--NLRVNFVE-PYIVVGQSLLVKKGLEKGVKSYKDLD 112 (245)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCC--------HHH--HTTSEECS-CSEEECEEEEEETTTTTTCCSGGGGC
T ss_pred eEEEEEc-cHHHHHHHHhCCCcCEEEecCcCC--------HHH--HhhcCcch-hhheeceEEEEECCcccccCCHHHhc
Confidence 4567775 699999999999999864332211 111 11111111 22333456666665 2 345554
Q ss_pred ----EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 ----RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 ----~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|....- ... ..+|.+..+++.++.+.|..++.+++..+ +-.|+|+....+.
T Consensus 113 ~~g~~i~v~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 168 (245)
T 3k4u_A 113 KPELTLVTKFG-VSA-EYAAKRLFKNAKLKTYDTEAEAVQEVLNG--KADMFIFDLPFNV 168 (245)
T ss_dssp CSSCEEEEETT-SHH-HHHHHHHCSSSEEEEESSHHHHHHHHHSS--SSEEEEEEHHHHH
T ss_pred cCCcEEEEeCC-cHH-HHHHHhhCCcCCEEEeCCHHHHHHHHHcC--CCcEEEEcHHHHH
Confidence 3443322 222 45677767788899999999999999876 4678888875544
No 70
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=74.30 E-value=48 Score=31.16 Aligned_cols=155 Identities=12% Similarity=0.003 Sum_probs=86.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeccCCCCc--------
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY--------PNCEAIPCDQ-----FEVAFQAVELWIADRAVLPVENSLGGS-------- 185 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f--------~~~e~vp~~S-----f~~Vf~aV~~g~~d~gVVPIENS~~G~-------- 185 (423)
.+|+++.-|+|+..++++.++- +..++..+.+ -.+++++|..|.+|++++..-+. .|.
T Consensus 3 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~~~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~-~~~~p~~~~~~ 81 (301)
T 2pfy_A 3 SWTMTAEQPDANYLTQNARQFADEVKAATAGALEIKVQSNSTLLKRPEVKRGVQQGVVQIGEVLVSAL-GNEDPLFEIDS 81 (301)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTSSSCGGGHHHHHHHTSSSEEEEEGGGG-TTTCGGGGGGG
T ss_pred EEEecccCCCCcchhHHHHHHHHHHHHHcCCeEEEEEccchhhCChHHHHHHHHCCCeeeehhhhhhh-hccCccccccc
Confidence 4689999999988787776531 2234444443 37899999999999998864211 000
Q ss_pred -----------------hHHHH-HHhhcCCcEEEEEEEEeeeeeeeecCC-CCcCccc--EEEechhHHHHHHHHHHHcC
Q 014547 186 -----------------IHRNY-DLLLRHRLHIVGEVQLPVHHCLLALPG-VRKEYLT--RVISHPQALSQCEHTLTKLG 244 (423)
Q Consensus 186 -----------------V~~tl-DlL~~~~L~IvgEi~lpI~h~Lla~~g-~~l~dIk--~VySHPqAL~QC~~fL~~~~ 244 (423)
..+.+ +.+.+.++++.+-....-.+ +..++. .+++|++ +|..- ... -..+++..+
T Consensus 82 lPfl~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~-~~~~~pI~s~~DlkG~KiR~~-~~~--~~~~~~~lG 157 (301)
T 2pfy_A 82 VPFLASSFNESEKLWKATRPLLAQRLDKQGIVLVYGSPWPPQG-IYTKKPVAALADLKGTRFRAY-SAS--TSHMAALMG 157 (301)
T ss_dssp STTTSCSHHHHHHHHHHHHHHHHHHHHTTTEEEEEEEECCCCE-EEESSCCSSGGGGTTCEEEEC-SHH--HHHHHHHTT
T ss_pred CCcccCCHHHHHHHHHHhhHHHHHHHHHCCCEEEEeecCCCcc-eecCCCCCCHHHhCCCEEeec-Chh--HHHHHHHcC
Confidence 01111 23345788888754444333 444433 2455665 45442 222 246788876
Q ss_pred CceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCc
Q 014547 245 LNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGI 291 (423)
Q Consensus 245 p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nI 291 (423)
. ..++. +.++.-..+..+ .-.|+..+.......++.=+.+.+
T Consensus 158 a--~pv~~-~~~E~y~ALq~G--~vDg~~~~~~~~~~~~~~ev~k~~ 199 (301)
T 2pfy_A 158 A--VPTTV-QTPEVPQAFSTG--VIDAMLTSPATGVDSQAWDYVKYY 199 (301)
T ss_dssp S--EEEEC-CGGGHHHHHHTT--SCSBEEECHHHHHHTTGGGTCCEE
T ss_pred C--cceec-cHHHHHHHHhcc--eeeeEecCccccccccHHHHhhhh
Confidence 4 44443 334444444444 235566666555455554333333
No 71
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A*
Probab=73.07 E-value=24 Score=31.56 Aligned_cols=116 Identities=12% Similarity=0.105 Sum_probs=65.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dIk-- 224 (423)
+.++++.+ +.++++++++|++|+++-++.-+ .+- ...+... +-+......|+++++.. ++|++
T Consensus 81 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~~-----~~r-----~~~~~~s-~p~~~~~~~l~~~~~~~i~~~~dL~g~ 148 (272)
T 2pvu_A 81 DYELKNIG-WDPLFASLQSKEVDMGISGITIT-----DER-----KQSYDFS-DPYFEATQVILVKQGSPVKNALDLKGK 148 (272)
T ss_dssp CEEEEECC-HHHHHHHHHHTSSSEECSSCBCC-----HHH-----HTTEEEC-SCCEEECEEEEEETTCCCCSGGGGTTS
T ss_pred ceEEEECC-HHHHHHHHhCCCCCEEEeCCcCC-----HHH-----HhcCccc-hhhhccceEEEEECCCCCCCHHHhCCC
Confidence 45677775 99999999999999986432211 111 1111111 12233445677776543 33332
Q ss_pred EEEechhHHHHHHHHHHHc-CCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 RVISHPQALSQCEHTLTKL-GLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~-~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....- ... ..+|.+. +....++.+.+..++.+++..+ +-.|++.....+..
T Consensus 149 ~i~~~~g-~~~-~~~l~~~~~~~~~i~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 202 (272)
T 2pvu_A 149 TIGVQNA-TTG-QEAAEKLFGKGPHIKKFETTVVAIMELLNG--GVDAVITDNAVANE 202 (272)
T ss_dssp CEEEETT-SHH-HHHHHHHHCSSTTEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred eEEEEcC-chH-HHHHHHhcCCCCeEEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 4443322 112 2455554 2244566778899999998876 45677877665543
No 72
>3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans}
Probab=72.61 E-value=7.4 Score=40.08 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=45.0
Q ss_pred eEEEE--EEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHH
Q 014547 318 KTSIV--FAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALA 395 (423)
Q Consensus 318 KTSiv--f~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~ 395 (423)
++.+. |.+.|+||.|.++-+.|.+++|++..+-.++..... + .--..+ +.-...+.+++++++
T Consensus 357 ~~~yy~r~~~~d~~gvl~~i~~~~~~~~isi~~~~q~~~~~~~---------~----~~~~v~--~th~~~e~~~~~~~~ 421 (444)
T 3mtj_A 357 RTAYYLRLRAFDRPGVLADITRILADSSISIDAMVQKEPAEGE---------E----QVDIIL--LTHVTLEKNVNAAIA 421 (444)
T ss_dssp EEEEEEEEEEC-CCHHHHHHHHHHHHTTCCEEEEEECC-------------------CEEEEE--EECSEEHHHHHHHHH
T ss_pred ceeeEEEEEecCcccHHHHHHHHHHhcCCceeEEeecccccCC---------C----CceEEE--EeccCCHHHHHHHHH
Confidence 45544 566799999999999999999999988777643110 0 011222 222346789999999
Q ss_pred HHHhh
Q 014547 396 EVQEF 400 (423)
Q Consensus 396 eL~~~ 400 (423)
+|+..
T Consensus 422 ~~~~~ 426 (444)
T 3mtj_A 422 KIEAL 426 (444)
T ss_dssp HHTTS
T ss_pred HHhcC
Confidence 99864
No 73
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=72.56 E-value=49 Score=30.41 Aligned_cols=116 Identities=17% Similarity=0.013 Sum_probs=72.4
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-cCCcEEEEEEEEeeeeeeeecCCC-----CcCcc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-RHRLHIVGEVQLPVHHCLLALPGV-----RKEYL 223 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L~IvgEi~lpI~h~Lla~~g~-----~l~dI 223 (423)
++++++..+..+++++|..|++|+++.+.. .++.... ..++.+++.....-...++++++. +++|+
T Consensus 65 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~i~s~~DL 136 (346)
T 3qsl_A 65 DVSIADFAGGSKALQAVVGGSADVVSGAFE--------HTLSLQAKGQFYRAFALQGRAPMIGVGVSKKNLPGYKGPADL 136 (346)
T ss_dssp EEEEEECSSHHHHHHHHHTTSCSEEEEETH--------HHHHHHHTTCCEEEEEESBSSCCEEEEEETTTCTTCCSGGGG
T ss_pred eEEEEecCChHHHHHHHHCCCCCEEccchH--------HHHHHHhCCCCeEEEEecccCCCcEEEEecCcccCCCChHHc
Confidence 357788899999999999999999987643 2222222 346666665444334566666543 34455
Q ss_pred c--EEEec-hh--HHHHHHHHHHHcCC---ceeEEeccCHHHHHHHHHhcCCCCeeEEcc
Q 014547 224 T--RVISH-PQ--ALSQCEHTLTKLGL---NVAREAVDDTAGAAEYIAANDLRDTAAIAS 275 (423)
Q Consensus 224 k--~VySH-Pq--AL~QC~~fL~~~~p---~~~~v~~~STA~AA~~va~~~~~~~AAIaS 275 (423)
+ +|... +- .....+.+|++.+. +++++.+.+..++...+..+. -.|++..
T Consensus 137 ~Gk~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~--vDa~~~~ 194 (346)
T 3qsl_A 137 KGRKIGVTAPGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQ--IDAISNT 194 (346)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTS--CSEEEEE
T ss_pred CCCEEEECCCCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCC--ccEEEec
Confidence 3 56544 22 23345677877654 456777777777778777653 3455543
No 74
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=71.22 E-value=25 Score=30.31 Aligned_cols=94 Identities=10% Similarity=0.010 Sum_probs=57.4
Q ss_pred cEEEEeCCCccHHHHHHhh---hCCC--Cceee-cCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-c---CC
Q 014547 128 LRVAYQGVPGAYSEAAAGK---AYPN--CEAIP-CDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-R---HR 197 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~---~f~~--~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~---~~ 197 (423)
.+||+ ..|+..+....+ .++. .++.. ..+.++++++|.+|++|+.+..-. ++..++ + .+
T Consensus 116 ~~i~~--~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g~vDa~~~~~~---------~~~~~~~~~~~~~ 184 (246)
T 4eq9_A 116 KSTEV--VQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDGQFDYKIFDKI---------GVETVIKNQGLDN 184 (246)
T ss_dssp CEEEE--CTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHHTCTT
T ss_pred CEEEE--ecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcCCceEEEecHH---------HHHHHHHhCCCCC
Confidence 48888 578887776665 4553 34553 359999999999999999988622 222222 1 24
Q ss_pred cEEEEEEEEeee-eeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 198 LHIVGEVQLPVH-HCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 198 L~IvgEi~lpI~-h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
+.+.+....... .+++.+++ +|+-..+..++|.+.
T Consensus 185 ~~~~~~~~~~~~~~~~~~~k~-----------~~~l~~~ln~~l~~l 220 (246)
T 4eq9_A 185 LKVIELPSDQQPYVYPLLAQG-----------QDELKSFVDKRIKEL 220 (246)
T ss_dssp EEEEECCCSSCCEECCEEETT-----------CHHHHHHHHHHHHHH
T ss_pred ceEecCcCCCCCcEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 777764433322 34444432 355566666666553
No 75
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida}
Probab=69.11 E-value=22 Score=34.38 Aligned_cols=67 Identities=10% Similarity=0.167 Sum_probs=45.4
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCc-ChHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASM-AEVRAQNALAE 396 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~-~d~~v~~aL~e 396 (423)
+..|.+.-+|+||-..++-+.++.+|+|+..+...-.... ..|+.-++++... +...+++++++
T Consensus 7 ~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~---------------g~Ffmr~~~~~~~~~~~~L~~~f~~ 71 (287)
T 3nrb_A 7 QYVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDS---------------SKFFMRVSVEIPVAGVNDFNSAFGK 71 (287)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTT---------------TEEEEEEEEECCC---CHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCC---------------CeEEEEEEEEcCCCCHHHHHHHHHH
Confidence 4456667789999999999999999999999988633221 1334444554321 22477777777
Q ss_pred HHh
Q 014547 397 VQE 399 (423)
Q Consensus 397 L~~ 399 (423)
+.+
T Consensus 72 la~ 74 (287)
T 3nrb_A 72 VVE 74 (287)
T ss_dssp HHG
T ss_pred HHH
Confidence 754
No 76
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A
Probab=69.04 E-value=37 Score=28.90 Aligned_cols=117 Identities=11% Similarity=0.014 Sum_probs=67.2
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC-----CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV-----RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~dIk 224 (423)
+.++++..++.++++++++|++|+++-++.-+ .+.. ....+.. ..-+......++++++. +++|++
T Consensus 45 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~~-----~~r~---~~~~~~~-s~p~~~~~~~~~~~~~~~~~i~~~~dL~ 115 (233)
T 1ii5_A 45 NSEYVRQNSISAGITAVAEGELDILIGPISVT-----PERA---AIEGITF-TQPYFSSGIGLLIPGTATPLFRSVGDLK 115 (233)
T ss_dssp CEEEEECSCHHHHHHHHHTTSCSEEEEEEECC-----HHHH---TSTTEEE-CCCCEEEEEEEEEEGGGTTTCSSGGGGT
T ss_pred cEEEEEeCCHHHHHHHHHCCCcCEEEeeeecC-----cccc---ccceeEE-ccceeecCeEEEEECCCCCCCCCHHHhC
Confidence 56788888999999999999999987543311 1111 0011111 11122334556655432 233443
Q ss_pred --EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 --RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 --~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....- .. ...+|.+. +..++.+.+..++.+++..+ +-.|+|.....+..
T Consensus 116 g~~v~~~~g-~~-~~~~l~~~--~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~~ 168 (233)
T 1ii5_A 116 NKEVAVVRD-TT-AVDWANFY--QADVRETNNLTAAITLLQKK--QVEAVMFDRPALIY 168 (233)
T ss_dssp TCEEEEETT-SH-HHHHHHHT--TCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred CCeEEEECC-cc-HHHHHHHc--CCCeEEcCCHHHHHHHHHcC--CccEEEeCHHHHHH
Confidence 4433222 11 23466665 35677788899999999876 45688877665543
No 77
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=67.95 E-value=73 Score=29.06 Aligned_cols=139 Identities=16% Similarity=0.068 Sum_probs=75.8
Q ss_pred ccEEEEeCCCccHHHHHH-hhh----CCC--CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcE
Q 014547 127 QLRVAYQGVPGAYSEAAA-GKA----YPN--CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLH 199 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA-~~~----f~~--~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~ 199 (423)
.++||+......| ..|. ..+ +++ ++++...+-.+++++|.+|++|+++.... ......-...++.
T Consensus 4 ~lrig~~~~~~~~-~~a~~~g~~~~~~~g~~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~-------~~~~~~~~g~~~~ 75 (308)
T 2x26_A 4 ALRIGYQKGSIGM-VLAKSHQLLEKRYPESKISWVEFPAGPQMLEALNVGSIDLGSTGDI-------PPIFAQAAGADLV 75 (308)
T ss_dssp EEEEEECTTCHHH-HHHHHTTHHHHHCTTSEEEEEECSSHHHHHHHHHHTSCSEEEECSH-------HHHHHHHTTCCEE
T ss_pred EEEEEccCCchHH-HHHHhcChHhHhcCCCceEEEECCCcHHHHHHHHCCCCCEEcccCc-------HHHHHHhcCCCeE
Confidence 5789998543223 2222 112 333 56778888889999999999999976422 1111111123555
Q ss_pred EEEEEE-EeeeeeeeecCCCC---cCccc--EEEechh--HHHHHHHHHHHcCCc---eeEEeccCHHHHHHHHHhcCCC
Q 014547 200 IVGEVQ-LPVHHCLLALPGVR---KEYLT--RVISHPQ--ALSQCEHTLTKLGLN---VAREAVDDTAGAAEYIAANDLR 268 (423)
Q Consensus 200 IvgEi~-lpI~h~Lla~~g~~---l~dIk--~VySHPq--AL~QC~~fL~~~~p~---~~~v~~~STA~AA~~va~~~~~ 268 (423)
+++... .+....|+++++.. ++|++ +|...+- .......+|++.+.. ++.+. .+..++.+.+..+.
T Consensus 76 ~~~~~~~~~~~~~lv~~~~~~i~s~~dL~Gk~i~~~~gs~~~~~l~~~l~~~Gl~~~~v~~~~-~~~~~~~~al~~G~-- 152 (308)
T 2x26_A 76 YVGVEPPKPKAEVILVAENSPIKTVADLKGHKVAFQKGSSSHNLLLRALRQAGLKFTDIQPTY-LTPADARAAFQQGN-- 152 (308)
T ss_dssp EEEEECCCGGGEEEEEETTCSCCSGGGGTTSEEEECTTSHHHHHHHHHHHHTTCCGGGSEEEE-CCHHHHHHHHHTTS--
T ss_pred EEEEecCCCCceEEEEeCCCCCCCHHHcCCCEEeeeCCCcHHHHHHHHHHHcCCCHHHeEEEe-cChHHHHHHHHcCC--
Confidence 555432 23356788776543 34443 5554322 122345677766532 33333 35667777777652
Q ss_pred CeeEEccH
Q 014547 269 DTAAIASA 276 (423)
Q Consensus 269 ~~AAIaS~ 276 (423)
-.|++...
T Consensus 153 vDa~~~~~ 160 (308)
T 2x26_A 153 VDAWAIWD 160 (308)
T ss_dssp SSEEEEET
T ss_pred CCEEEecc
Confidence 34555443
No 78
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=66.69 E-value=82 Score=29.20 Aligned_cols=135 Identities=13% Similarity=0.056 Sum_probs=78.3
Q ss_pred ccEEEEeC-CCc-cHHHHHHhhhCC---CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhc-CCcEE
Q 014547 127 QLRVAYQG-VPG-AYSEAAAGKAYP---NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLR-HRLHI 200 (423)
Q Consensus 127 ~~~VayLG-P~G-TfSh~AA~~~f~---~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~-~~L~I 200 (423)
..|||++- |.+ ..-+..-...+. ++++..+.+.+++.+++..|++|++++|..- ...+..+ .++.|
T Consensus 6 ~irvg~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~~~al~~G~~D~~~~~~~~--------~~~~~~~g~~~~i 77 (283)
T 3hn0_A 6 VIKVSVLRGPSVIAFADWLENPPIIDNKKVQVKVVDSPDLAQALLIKQETDIAVLPMIN--------AANLYNKGIKIKL 77 (283)
T ss_dssp EEEEEEESSTHHHHTHHHHHSCCEETTEEEEEEEESCHHHHHHHHHTTCCSEEEEEHHH--------HHHHHHTTCSCEE
T ss_pred eEEEEecCCCcHHHHHHHHhccccccCccEEEEEeCCHHHHHHHHHCCCCCEEEEcHHH--------HHHHHHCCCCeEE
Confidence 67999982 321 111221112221 3578889999999999999999999987431 1111112 25677
Q ss_pred EEEEEEeeeeeeeecCCCCcCcccEEEec-h--hHHHHHHHHHHHcCCceeEEecc-CHHHHHHHHHhcCCCCeeEEc
Q 014547 201 VGEVQLPVHHCLLALPGVRKEYLTRVISH-P--QALSQCEHTLTKLGLNVAREAVD-DTAGAAEYIAANDLRDTAAIA 274 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g~~l~dIk~VySH-P--qAL~QC~~fL~~~~p~~~~v~~~-STA~AA~~va~~~~~~~AAIa 274 (423)
++-...- ...|++++. |.. |+|... + .+....+.+|++++.+++++... +..++...+..++ -+.+.+.
T Consensus 78 ~~~~~~g-~~~lv~~~~--LkG-K~Iav~~~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~-vDa~~~~ 150 (283)
T 3hn0_A 78 AGCPIWG-TLYLVEKTP--LKE-PALYVFGNGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGK-VNRAVLG 150 (283)
T ss_dssp EEEEECC-CCEEEECSS--CCS-CCEECSSTTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTS-CSEEEEC
T ss_pred EEEeccc-EEEEEecCC--CCC-CEEEecCCCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCC-CCEEEec
Confidence 6643322 223555433 332 466643 2 34455677888877677777766 6777777777653 3444443
No 79
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria}
Probab=66.38 E-value=19 Score=32.32 Aligned_cols=33 Identities=6% Similarity=0.008 Sum_probs=27.7
Q ss_pred EEEEEeCCCccHHHHHHHHHHhCCceeeeeeee
Q 014547 320 SIVFAHDKGTSVLFKVLSAFAFRNISLTKIESR 352 (423)
Q Consensus 320 Sivf~l~~~pGaL~~vL~~Fa~~~INLtkIESR 352 (423)
-|.+.-+|+||-..++-+.++.+|+|+..+.--
T Consensus 7 ~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~ 39 (195)
T 2nyi_A 7 VVSVAGSDRVGIVHDFSWALKNISANVESSRMA 39 (195)
T ss_dssp EEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEE
T ss_pred EEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeE
Confidence 355567899999999999999999999966554
No 80
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=66.24 E-value=72 Score=29.87 Aligned_cols=115 Identities=17% Similarity=0.079 Sum_probs=78.2
Q ss_pred hCCC--CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEee---eeeeeecCCCCcC
Q 014547 147 AYPN--CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPV---HHCLLALPGVRKE 221 (423)
Q Consensus 147 ~f~~--~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI---~h~Lla~~g~~l~ 221 (423)
.|.+ .++.+...++..+.+|.+|++|++|+- ...+-+.+.+.++.++-++--+- .|.|+.+++ +..
T Consensus 40 ~f~gi~~~i~~mrg~~~RI~aL~~gk~D~aI~S--------~~aa~e~~~~~~r~~~vdFg~~yYv~~h~li~~~~-~~~ 110 (231)
T 2ozz_A 40 QFDGIPFYYAHMRGADIRVECLLNGVYDMAVVS--------RLAAESYLSQNNLCIALELGPHTYVGEHQLICRKG-ESG 110 (231)
T ss_dssp TTTTSCEEEEECSCHHHHHHHHHTTSCSEEEEE--------HHHHHHHHHHSCEEEEEECCTTSSSCCEEEEEETT-CGG
T ss_pred HhcCCcEEEEEccChHHHHHHHHcCCCCEEEEe--------cccchhhhcccCeEEEEEcCCCccccCeEEEEeCC-Ccc
Confidence 4544 467889999999999999999999884 23444555556666666654432 356776655 235
Q ss_pred cccEEEechhHHHHHHHHHHHc-CCceeEEec-cCHHHHHHHHHhcCCCCeeEEc
Q 014547 222 YLTRVISHPQALSQCEHTLTKL-GLNVAREAV-DDTAGAAEYIAANDLRDTAAIA 274 (423)
Q Consensus 222 dIk~VySHPqAL~QC~~fL~~~-~p~~~~v~~-~STA~AA~~va~~~~~~~AAIa 274 (423)
.|++|--.+-...|+. |.+. ..+.++..+ .+..++.+.+..++ -.|+|-
T Consensus 111 ~ikrVGvd~gS~dq~~--lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~--IDA~Iw 161 (231)
T 2ozz_A 111 NVKRVGLDSRSADQKI--MTDVFFGDSDVERVDLSYHESLQRIVKGD--VDAVIW 161 (231)
T ss_dssp GCCEEEECTTCHHHHH--HHHHHHTTSCCEEEECCHHHHHHHHHHTS--CCEEEE
T ss_pred ccEEEEecCCChhHHH--HHhhhcCCCeEEEEECCHHHHHHHHHcCC--ccEEEE
Confidence 6799999998888874 3221 133344445 68888999888763 567776
No 81
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311}
Probab=65.62 E-value=2.7 Score=37.74 Aligned_cols=118 Identities=8% Similarity=-0.020 Sum_probs=65.4
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC---CcCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV---RKEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~dIk-- 224 (423)
+.++++++ +.++++++++|++|+++-++-- +.+. ...+.... -+.....+|+++++. +++|++
T Consensus 61 ~~~~~~~~-~~~~~~~l~~g~~D~~~~~~~~--------t~~r--~~~~~fs~-p~~~~~~~~~~~~~~~i~~~~dL~g~ 128 (268)
T 3hv1_A 61 DVEWQAID-WDMKETELKNGTIDLIWNGYSV--------TDER--KQSADFTE-PYMVNEQVLVTKKSSGIDSVAGMAGK 128 (268)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCBC--------CHHH--HTTCEECC-CCEEECEEEEEEGGGCCCSSGGGTTC
T ss_pred cEEEEECC-HHHHHHHHHCCCCCEEEecCcc--------CHHH--HhcCcCcH-HHeeCceEEEEECCCCCCCHHHhCCC
Confidence 45677774 9999999999999987522211 1111 11111111 223344566666543 233332
Q ss_pred EEEec-----hhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 RVISH-----PQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ~VySH-----PqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|..- ...+.+-.+++....++.+++.+.+..++.+++..+ +-.|+|.....+..
T Consensus 129 ~i~v~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~~ 188 (268)
T 3hv1_A 129 TLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQALIDLNSG--RIDGLLIDRVYANY 188 (268)
T ss_dssp CEEEETTCHHHHHHHHCTTTTTTTSGGGCEEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred EEEEEeCCchHHHHHHhhHHHhhhcccceEEEeCCHHHHHHHHHcC--CCCEEEeCHHHHHH
Confidence 33221 111111112333334557788889999999999986 46788877765543
No 82
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae}
Probab=65.40 E-value=20 Score=32.81 Aligned_cols=116 Identities=9% Similarity=0.021 Sum_probs=69.7
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dIk-- 224 (423)
+.++++.. +.++++++++|++|+++..+.- +.+. ...+... .-+......|+++++.. ++|++
T Consensus 98 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~--------~~~r--~~~~~~~-~p~~~~~~~l~~~~~~~i~sl~dL~gk 165 (291)
T 2yjp_A 98 KVEFVLTE-AANRVEYVRSGKVDLILANFTQ--------TPER--AEAVDFA-DPYMKVALGVVSPKNKPITDMAQLKDQ 165 (291)
T ss_dssp GEEEEECC-GGGHHHHHHTTSCSEECSSCBC--------CHHH--HTTEEEC-CCCEEECEEEEEETTSCCCSGGGGTTS
T ss_pred eEEEEEcc-HHHHHHHHhCCCeeEEEeCCCC--------ChHH--Hccceec-cCeeecceEEEEeCCCCCCCHHHhCCC
Confidence 35677776 6899999999999988643321 1111 1112221 12234456777776643 33432
Q ss_pred EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|.. +..-.. ..+|.+.+++..++.+.+..++.+.+..+ +-.|++.....+..
T Consensus 166 ~v~~-~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 218 (291)
T 2yjp_A 166 TLLV-NKGTTA-DAFFTKSHPEVKLLKFDQNTETFDALKDG--RGVALAHDNALLWA 218 (291)
T ss_dssp EEEE-ETTSHH-HHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEE-ecCCcH-HHHHHHhCCCceEEEeCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 4544 222222 34666666777888888999999998876 45677877665543
No 83
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0
Probab=65.01 E-value=26 Score=30.54 Aligned_cols=112 Identities=8% Similarity=0.028 Sum_probs=69.6
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCCcCccc-EEEe
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLT-RVIS 228 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~l~dIk-~VyS 228 (423)
+.++++. ++..++.++++|++|.++-++--+ -+ .+..+... .-++.....++++++. +++++ +|..
T Consensus 45 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t--------~~--r~~~~~fs-~p~~~~~~~~~~~~~~-~~dL~g~igv 111 (232)
T 3i6v_A 45 TCEWVKN-DWDSIIPNLVSGNYDTIIAGMSIT--------DE--RDEVIDFT-QNYIPPTASSYVATSD-GADLSGIVAA 111 (232)
T ss_dssp CEEEEEC-CGGGHHHHHHTTSCSEECSSCBCC--------HH--HHTTSEEE-EEEECCCEEEEEESST-TCCTTSEEEE
T ss_pred ceEEEEC-CHHHHHHHHHCCCCCEEEeCCcCC--------HH--HHhhcCcc-cccccCCeEEEEECCC-hHHhCCCEEE
Confidence 4677775 899999999999999865433211 11 11223333 3355566778877653 33332 3333
Q ss_pred chhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 229 HPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 229 HPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
.. ... -..+|.+. ++.++.+.|..++.+++..+ +-.|+|.....+.
T Consensus 112 ~~-g~~-~~~~l~~~--~~~~~~~~~~~~~~~~L~~G--rvDa~i~~~~~~~ 157 (232)
T 3i6v_A 112 QT-ATI-QAGYIAES--GATLVEFATPEETIAAVRNG--EADAVFADRDYLV 157 (232)
T ss_dssp ET-TSH-HHHHHHHS--SSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred ec-Cch-HHHHHHhc--CCeEEEeCCHHHHHHHHHcC--CcCEEEEChHHHH
Confidence 22 222 24566665 46788889999999999876 4678888776654
No 84
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp}
Probab=64.88 E-value=17 Score=30.99 Aligned_cols=116 Identities=11% Similarity=0.084 Sum_probs=69.0
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEee-eeeeeecCCC--CcCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPV-HHCLLALPGV--RKEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI-~h~Lla~~g~--~l~dIk-- 224 (423)
+.++++. ++.++++++++|++|+++-++.- -.+.. ..+.... -+... ...|+++++. +++|++
T Consensus 46 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~-----~~~r~-----~~~~~s~-p~~~~~~~~~~~~~~~~~~~~dL~g~ 113 (229)
T 2y7i_A 46 ECSFTNQ-SFDSLIPSLRFKKFDAVIAGMDM-----TPKRE-----QQVSFSQ-PYYEGLSAVVVTRKGAYHTFADLKGK 113 (229)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBC-----CHHHH-----TTSEECS-CSBCCCCEEEEEETTSCCSTGGGTTC
T ss_pred eEEEEEc-CHHHHHHHHhCCCceEEEecCcc-----CHHHh-----cceeecc-ccccCCcEEEEEeCCCCCCHHHHCCC
Confidence 3567775 78999999999999987632210 01111 1111111 12233 5566766653 233332
Q ss_pred EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|.... .... ..+|.+..++..++.+.|..++.+++..+ +-.|+|.....+..
T Consensus 114 ~v~~~~-g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~~~~~~~~~~ 166 (229)
T 2y7i_A 114 KVGLEN-GTTH-QRYLQDKQQAITPVAYDSYLNAFTDLKNN--RLEGVFGDVAAIGK 166 (229)
T ss_dssp EEEEET-TSHH-HHHHHHHCTTSEEEEESCHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred EEEEec-CCcH-HHHHHHhCCCCeEEecCCHHHHHHHHHcC--CcCEEEechHHHHH
Confidence 444322 2222 45777776778888889999999999876 46788887766543
No 85
>3ix1_A N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine protein; periplasmic N-formyl-4-amino-5-aminomethyl-2-methylpyrimidin protein; HET: NFM; 2.40A {Bacillus halodurans c-125}
Probab=64.74 E-value=63 Score=29.53 Aligned_cols=113 Identities=12% Similarity=-0.082 Sum_probs=64.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCcc--c
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYL--T 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dI--k 224 (423)
++++++..+-.+.+++|..|++|+++.... ......-...++.+++.....-...|+++++.. ++|+ |
T Consensus 35 ~v~~~~~~~~~~~~~~l~~G~~D~~~~~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~s~i~s~~DL~Gk 107 (302)
T 3ix1_A 35 DVDIVFPTNPTDPIQLTASGAIPLALSYQP-------DVILARSKDLPVVSVASVVRSPLNHVMFLAEQDFDSPADLVGL 107 (302)
T ss_dssp EEEEECCSSTTHHHHHHHHTSCSEEEECHH-------HHHHHHHTTCCEEEEEEEECSCCEEEEEEGGGCCSSGGGGTTS
T ss_pred cEEEecCCCCchHHHHHHCCCCCEEecCHH-------HHHHHHHCCCCEEEEEEEeccCCEEEEEECCCCCCChHHcCCC
Confidence 367777777779999999999999976321 111111123567777766654457788876533 3444 3
Q ss_pred EEEechh--HHHHHHHHHHHcCCc---eeEEeccCHHHHHHHHHhcCCCCeeEE
Q 014547 225 RVISHPQ--ALSQCEHTLTKLGLN---VAREAVDDTAGAAEYIAANDLRDTAAI 273 (423)
Q Consensus 225 ~VySHPq--AL~QC~~fL~~~~p~---~~~v~~~STA~AA~~va~~~~~~~AAI 273 (423)
+|....- .....+.+|++++.+ ++++.... .+...+..+ .-.|++
T Consensus 108 ~i~~~~~~~~~~~~~~~l~~~Gl~~~~v~~~~~~~--~~~~al~~G--~vDa~~ 157 (302)
T 3ix1_A 108 TVGYPGIPVNEPILKTMVEAAGGDYEQVHLMDVGF--ELGASIVSG--RADAVV 157 (302)
T ss_dssp EEEECSCTTHHHHHHHHHHHTTCCGGGCEEEECTT--CHHHHHHHS--SSSEEE
T ss_pred EEEeCCCcchHHHHHHHHHHcCCCHHHeEEEecCc--cHHHHHhCC--CCCEEE
Confidence 5543322 233466777776543 55555432 234444444 234544
No 86
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A*
Probab=63.66 E-value=57 Score=29.22 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=67.8
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC---cCccc--E
Q 014547 151 CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR---KEYLT--R 225 (423)
Q Consensus 151 ~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dIk--~ 225 (423)
.++++. ++.+++.++++|++|+++-.+- . +.+. ...+... .-+......++++++.. ++|++ +
T Consensus 65 v~~~~~-~~~~~~~~l~~g~~D~~~~~~~------~--t~~r--~~~~~~s-~p~~~~~~~l~~~~~~~i~sl~dL~g~~ 132 (287)
T 2vha_A 65 VKLIPI-TSQNRIPLLQNGTFDFECGSTT------N--NVER--QKQAAFS-DTIFVVGTRLLTKKGGDIKDFADLKGKA 132 (287)
T ss_dssp EEEEEC-CTTTHHHHHHTTSCSEECSSCB------C--CHHH--HTTCEEE-EEEEEEEEEEEEETTSSCCSGGGGTTCE
T ss_pred EEEEEC-CHHHHHHHHHCCCeeEEecccc------C--Ccch--hhccccc-ceeeecceEEEEECCCCCCCHHHcCCCE
Confidence 456777 4588999999999998753211 0 1111 1122222 33455566778777643 33332 4
Q ss_pred EEechh--HHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 226 VISHPQ--ALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 226 VySHPq--AL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
|..-.- ......+++...+++..++.+.+..++.+.+..+ +-.|+|.....+..
T Consensus 133 v~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~i~~~~~~~~ 188 (287)
T 2vha_A 133 VVVTSGTTSEVLLNKLNEEQKMNMRIISAKDHGDSFRTLESG--RAVAFMMDDALLAG 188 (287)
T ss_dssp EEEETTSHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHHH
T ss_pred EEEeCCCcHHHHHHHHhhccCCCceEEEcCCHHHHHHHHHcC--CeeEEEeChHHHHH
Confidence 433211 1122334444445667788889999999999876 45677777665543
No 87
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}
Probab=63.54 E-value=22 Score=35.08 Aligned_cols=69 Identities=7% Similarity=0.046 Sum_probs=45.3
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCc---ChHHHHHHHHHH
Q 014547 321 IVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASM---AEVRAQNALAEV 397 (423)
Q Consensus 321 ivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~---~d~~v~~aL~eL 397 (423)
|.+.-+|+||-...+-+.++.+|+|+..++..-..+ .|...+.|+... +-..+++.|..+
T Consensus 15 lt~~g~Dr~Giv~~vs~~l~~~~~nI~d~~q~~~~~-----------------~f~~~~~~~~~~~~~~~~~l~~~l~~~ 77 (415)
T 3p96_A 15 ITVTGVDQPGVTATLFEVLSRHGVELLNVEQVVIRH-----------------RLTLGVLVCCPADVADGPALRHDVEAA 77 (415)
T ss_dssp EEEEEECCTTHHHHHHHHHTTTTCEEEEEEEEEETT-----------------EEEEEEEEEECHHHHTSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEEeeeEEECC-----------------EeEEEEEEEecCCcCCHHHHHHHHHHH
Confidence 444568999999999999999999999998864321 233333443321 225677777777
Q ss_pred H-hhcCceEE
Q 014547 398 Q-EFTSFLRV 406 (423)
Q Consensus 398 ~-~~~~~vrv 406 (423)
. ++.-.+++
T Consensus 78 ~~~~~~~~~~ 87 (415)
T 3p96_A 78 IRKVGLDVSI 87 (415)
T ss_dssp HHHTTCEEEE
T ss_pred HHHcCeEEEE
Confidence 4 34444443
No 88
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A*
Probab=63.14 E-value=35 Score=29.80 Aligned_cols=115 Identities=10% Similarity=0.081 Sum_probs=71.8
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEE--eeeeeeeecCC-C---CcCcc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQL--PVHHCLLALPG-V---RKEYL 223 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~l--pI~h~Lla~~g-~---~l~dI 223 (423)
+.++++. ++.++++++++|++|+++..+..+ -+ ....+.. .-+. .....++++++ . +++|+
T Consensus 71 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~--------~~--r~~~~~~--~p~~~~~~~~~~~~~~~~~~i~~~~dL 137 (268)
T 3qax_A 71 QLEVREF-AFDALILNLKKHRIDAILAGMSIT--------PS--RQKEIAL--LPYYGDEVQELMVVSKRSLETPVLPLT 137 (268)
T ss_dssp EEEEEEC-CGGGHHHHHHHTSSSEECSCCBCC--------HH--HHTTSEE--EEEECCCBCEEEEEEETTSCSCCCCGG
T ss_pred eEEEEec-CHHHHHHHHhCCCccEEeecCccC--------Hh--Hhcceee--ecceecccceEEEEECCCCCCCCHHHh
Confidence 4677887 899999999999999876332211 11 1123333 3444 55677777765 2 34444
Q ss_pred c--EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHc
Q 014547 224 T--RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELY 282 (423)
Q Consensus 224 k--~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelY 282 (423)
+ +|....-. .. ..++.+ .++..++.+.+..++.+.+..+ +-.|++.....+..+
T Consensus 138 ~g~~i~~~~g~-~~-~~~l~~-~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~~ 193 (268)
T 3qax_A 138 QYSSVAVQTGT-YQ-EHYLLS-QPGICVRSFDSTLEVIMEVRYG--KSPVAVLEPSVGRVV 193 (268)
T ss_dssp GSSCEEEETTS-HH-HHHHHT-STTCCEEEESCHHHHHHHHHTT--SSSEEEECHHHHHHH
T ss_pred CCCEEEEecCc-HH-HHHHHh-CCCceEEecCCHHHHHHHHHcC--CCCEEEecHHHHHHH
Confidence 3 44433222 22 345555 4567788888999999998876 467888887766554
No 89
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima}
Probab=62.63 E-value=37 Score=32.71 Aligned_cols=157 Identities=11% Similarity=-0.034 Sum_probs=87.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeccC------------
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY--------PNCEAIPCDQ-----FEVAFQAVELWIADRAVLPVENS------------ 181 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f--------~~~e~vp~~S-----f~~Vf~aV~~g~~d~gVVPIENS------------ 181 (423)
.+|+++..|+|+..+.++.++- +..++..+.+ -.+++++|..|.+|.+++..-..
T Consensus 10 ~l~~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~~av~~G~id~~~~~~~~~~~~~P~~~~~~l 89 (327)
T 2hpg_A 10 TLRFGHVLAPGEPYHQAFLKWAKAVEEKTNGDVRIEVFPSSQLGVEEDIIEQIRMGAPVGWNTDSARLGMYVKDIGVMNL 89 (327)
T ss_dssp EEEEECCCSTTSHHHHHHHHHHHHHHHHTTTSEEEEEECCCCSCCCCCHHHHHHHTCSEEEEEEHHHHTTTSGGGGGGGS
T ss_pred EEEEEccCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCccCCCHHHHHHHHhCCCccEEEechHhhhhhCccHHhccC
Confidence 5789999999987777765431 2234444433 37899999999999998864210
Q ss_pred ----------------------CCCchHH-HHHHhhc-CCcEEEEE-EEEeeeeeeeecCC-CCcCccc--EEEechhHH
Q 014547 182 ----------------------LGGSIHR-NYDLLLR-HRLHIVGE-VQLPVHHCLLALPG-VRKEYLT--RVISHPQAL 233 (423)
Q Consensus 182 ----------------------~~G~V~~-tlDlL~~-~~L~IvgE-i~lpI~h~Lla~~g-~~l~dIk--~VySHPqAL 233 (423)
+.|.+.. ..+.+.+ .++++.+- ...... .+..++. .+++|++ +|..-.-.
T Consensus 90 Pfl~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~~~~~~g~~~L~~~~~~g~~-~~~~~~pI~s~~DLkG~KiRv~~~~- 167 (327)
T 2hpg_A 90 AYFIDFMGAKTPEEAIEVLKKIKQSPTMQKWLKELEQRFGIKVLSFYWVQGYR-HFVTNKPIRKPEDLNGLRIRTPGAP- 167 (327)
T ss_dssp TTHHHHTTCCSHHHHHHHHHHHHTSHHHHHHHHHHHHHHCEEEEEEEEEEEEE-EEEESSCCSSGGGGTTCEEECCSSH-
T ss_pred CeEECCCCCCcHHHHHHHHHHHHcCHHHHHHHHHHHhhCCeEEEEEeccCcce-eEecCCCCCCHHHHCCCEEEeCCCH-
Confidence 1232211 1122334 67888876 444433 3333333 3556666 56654322
Q ss_pred HHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCc
Q 014547 234 SQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGI 291 (423)
Q Consensus 234 ~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nI 291 (423)
-...+++..+.. .++. +.++....+..+ .-.|+..+.....-.++.=+.+.+
T Consensus 168 -~~~~~~~alGa~--pv~m-~~~Evy~ALq~G--~VDg~~~p~~~~~~~~~~ev~ky~ 219 (327)
T 2hpg_A 168 -AWQESIRSLGAI--PVAV-NFGEIYTAVQTR--AVDGAELTYANVYNGGLYEVLKYM 219 (327)
T ss_dssp -HHHHHHHHHTSE--EECC-CGGGHHHHHHTT--SCSEEEECHHHHHHTTGGGTCCEE
T ss_pred -HHHHHHHHcCCE--eeec-CHHHHHHHHHcC--CeeEEECCHHHHHHcChhhhccEE
Confidence 235788888643 4433 334444444443 345667666554444554334433
No 90
>1sw5_A Osmoprotection protein (PROX); binding-protein, compatible solutes, cation-PI interactions, classical hydrogen bonds, protein binding; 1.80A {Archaeoglobus fulgidus} SCOP: c.94.1.1 PDB: 1sw4_A 1sw1_A 1sw2_A 3mam_A*
Probab=62.40 E-value=38 Score=31.49 Aligned_cols=139 Identities=14% Similarity=0.110 Sum_probs=73.4
Q ss_pred CCceee-cCCHHHHHHHHHcCCcCeEEEeecc---CCCCc-------hHHHHHH----hh-cCCcEEEEEEEEeeeeeee
Q 014547 150 NCEAIP-CDQFEVAFQAVELWIADRAVLPVEN---SLGGS-------IHRNYDL----LL-RHRLHIVGEVQLPVHHCLL 213 (423)
Q Consensus 150 ~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIEN---S~~G~-------V~~tlDl----L~-~~~L~IvgEi~lpI~h~Ll 213 (423)
++++.+ ..+-..+++++.+|++|+++-=.-+ ...+. -.+.++. +. +.++.+++-....-.+.|+
T Consensus 35 ~Ve~~~~~g~~~~~~~al~~G~iD~~~eytGt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l~ 114 (275)
T 1sw5_A 35 KAEVKEGLGGTLVNYEALKRNDIQLYVEYTGTAYNVILRKQPPELWDQQYIFDEVKKGLLEADGVVVAAKLGFRDDYALA 114 (275)
T ss_dssp CEEECTTCCSHHHHHHHHHHTSSSEEEEEHHHHHHTTSCCCCCSSCCHHHHHHHHHHHHHHHHCCEEEEEEEEECCEEEE
T ss_pred cEEEEeCCCchHHHHHHHHcCCCcEEEeehhhHHHHhcCCCCccCCCHHHHHHHHHHHhhhcCCeEEeccCCCCCeeEEE
Confidence 356666 6678899999999999988520000 01111 1223333 22 2478999887666567888
Q ss_pred ecCCC-------CcCccc------EEEechhHHH---HHHHHHHHcCCce-eEEeccCHHHHHHHHHhcCCCCeeEE-cc
Q 014547 214 ALPGV-------RKEYLT------RVISHPQALS---QCEHTLTKLGLNV-AREAVDDTAGAAEYIAANDLRDTAAI-AS 275 (423)
Q Consensus 214 a~~g~-------~l~dIk------~VySHPqAL~---QC~~fL~~~~p~~-~~v~~~STA~AA~~va~~~~~~~AAI-aS 275 (423)
+++.. +++|++ ++-+-+.-.. .-..+++..+.+. .++.. +.+.+.+.+..+ ..+.+.+ .+
T Consensus 115 V~~~~a~~~~i~si~DL~g~~~~~~~g~~~~~~~~~~g~~~~~~~yGl~~~~~~~~-~~~~~~~Al~~g-~vd~~~~~~p 192 (275)
T 1sw5_A 115 VRADWAEENGVEKISDLAEFADQLVFGSDPEFASRPDGLPQIKKVYGFEFKEVKQM-EPTLMYEAIKNK-QVDVIPAYTT 192 (275)
T ss_dssp EEHHHHHHHTCCBGGGGTTTGGGCEEEECHHHHHSTTSHHHHHHHHTCCCSEEEEC-CGGGHHHHHHTT-SCSEEEEETT
T ss_pred EeHHHHHHcCCCcHHHHHhhhcceEeccCcccccccchHHHHHHhcCCCcccccCC-CHHHHHHHHHcC-CCeEEEEeCC
Confidence 87522 234443 2222222110 1222566655433 23333 555555555554 3445444 33
Q ss_pred HHHHHHcCCceeecC
Q 014547 276 ARAAELYGMQVLEDG 290 (423)
Q Consensus 276 ~~AAelYgL~ILa~n 290 (423)
.-....|+|.+|.++
T Consensus 193 ~~~~~~~~l~~L~d~ 207 (275)
T 1sw5_A 193 DSRVDLFNLKILEDD 207 (275)
T ss_dssp CHHHHHTTEEECBCT
T ss_pred CcchhcCCeEEccCC
Confidence 333456899998864
No 91
>3onm_A Transcriptional regulator LRHA; LYSR, ROVM, transcription factor, virulence factor; 2.40A {Yersinia pseudotuberculosis}
Probab=61.84 E-value=78 Score=27.26 Aligned_cols=133 Identities=9% Similarity=-0.023 Sum_probs=73.4
Q ss_pred CccEEEEeCCCccH-HHHHHh---hhCCCCcee-ecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEE
Q 014547 126 SQLRVAYQGVPGAY-SEAAAG---KAYPNCEAI-PCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHI 200 (423)
Q Consensus 126 ~~~~VayLGP~GTf-Sh~AA~---~~f~~~e~v-p~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 200 (423)
+..+||+...-+.+ --.+.. +.+|+.++. -..+-.++.+.+.+|++|+|++.... . + +
T Consensus 27 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~i~~~~~~~~~~~L~~g~~Dl~i~~~~~--~-------~--------~ 89 (238)
T 3onm_A 27 GSLIIGASDDTADTLLPFLLNRVATLYPRLAIDVRVKRSPFIADMLSSGEVDLAITTAKV--D-------S--------H 89 (238)
T ss_dssp CCEEEEECHHHHTTHHHHHHHHHHHHCTTCCEEEEECCHHHHHHHHHHTSCSEEEECSCC----------C--------C
T ss_pred eeEEEeccchhhHHHHHHHHHHHHHHCCCcEEEEEECCHHHHHHHHHCCCccEEEEecCC--C-------C--------c
Confidence 36788775443221 112222 246877653 34667889999999999999986431 1 1 2
Q ss_pred EEEEEEeeeeeeeecCCCCc---CcccEEE-echh-HHHHHHHHHHHcCCcee-EEeccCHHHHHHHHHhcCCCCeeEEc
Q 014547 201 VGEVQLPVHHCLLALPGVRK---EYLTRVI-SHPQ-ALSQCEHTLTKLGLNVA-REAVDDTAGAAEYIAANDLRDTAAIA 274 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g~~l---~dIk~Vy-SHPq-AL~QC~~fL~~~~p~~~-~v~~~STA~AA~~va~~~~~~~AAIa 274 (423)
..+......+++++.++-.+ ..+.-|. .+.. -.....+++.+.+.... ...++|...+.++|+.+ ...||.
T Consensus 90 ~~~~l~~~~~~~v~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g---~Giail 166 (238)
T 3onm_A 90 PHVILRTSPTLWYCSVDYQFQPGEPVPLVVMDEPSLYREMAIEHLTQAGVPWRIAYVASSLSAIRAAVRAG---LGVTAR 166 (238)
T ss_dssp CEEEEEEECEEEEEETTCCCCTTSCEEEEEESSSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHTT---SCBEEE
T ss_pred ceEEeecCCEEEEEcCCCCcccCCCcceEECCCchhHHHHHHHHHHHCCCCeEEEEEeCCHHHHHHHHHcC---CeEEEe
Confidence 22333444566666655433 2344443 2222 23445667776654333 34466677777777764 345565
Q ss_pred cHHH
Q 014547 275 SARA 278 (423)
Q Consensus 275 S~~A 278 (423)
+...
T Consensus 167 p~~~ 170 (238)
T 3onm_A 167 PIEM 170 (238)
T ss_dssp EGGG
T ss_pred chHH
Confidence 5543
No 92
>1xs5_A 29 kDa protein, membrane lipoprotein TPN32; periplasmic binding protein, methionine, membrane protein; 1.85A {Treponema pallidum} SCOP: c.94.1.1
Probab=61.78 E-value=1e+02 Score=28.55 Aligned_cols=109 Identities=12% Similarity=0.010 Sum_probs=67.5
Q ss_pred ccEEEEeCCCccHHHHHHhhhCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh---cCCcE
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYP----NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL---RHRLH 199 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~---~~~L~ 199 (423)
..|||+.+...+.-..++.++|. +++++.+.+..+..+|+..|++|.+..- . ...++... ..+|.
T Consensus 4 ~i~vG~~~~~~~~~~~~~~~~~~~~Gl~ve~~~f~d~~~~n~AL~~G~iD~n~fq-------~-~~~l~~~~~~~g~~l~ 75 (241)
T 1xs5_A 4 TVGVGVLSEPHARLLEIAKEEVKKQHIELRIVEFTNYVALNEAVMRGDILMNFFQ-------H-VPHMQQFNQEHNGDLV 75 (241)
T ss_dssp EEEEEECSTTHHHHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTSSSEEEEE-------E-HHHHHHHHHHHTCCEE
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHcCCeEEEEEcCChHHHHHHHHcCCCCEeccC-------C-HHHHHHHHHHCCCCEE
Confidence 47899997654423444545663 3689999999999999999999997542 2 22344332 35677
Q ss_pred EEEEEEEeeeeeeeecCCCCcCccc---EEEe--chhHHHHHHHHHHHcC
Q 014547 200 IVGEVQLPVHHCLLALPGVRKEYLT---RVIS--HPQALSQCEHTLTKLG 244 (423)
Q Consensus 200 IvgEi~lpI~h~Lla~~g~~l~dIk---~VyS--HPqAL~QC~~fL~~~~ 244 (423)
+++.+...- ..+...+=.+++|++ +|.- -|--....-.+|++.+
T Consensus 76 ~v~~~~~~p-~g~ys~kiksl~dL~~G~~Iaip~d~sn~~ral~lL~~aG 124 (241)
T 1xs5_A 76 SVGNVHVEP-LALYSRTYRHVSDFPAGAVIAIPNDSSNEARALRLLEAAG 124 (241)
T ss_dssp EEEEEEECC-CEEECSSCCSGGGCCTTCEEEEECSHHHHHHHHHHHHHTT
T ss_pred EEEeecccc-ceeecCCCCChHHcCCCCEEEEeCCCchHHHHHHHHHHCC
Confidence 777554331 345555444677772 4443 3444445556777654
No 93
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1
Probab=61.53 E-value=43 Score=30.29 Aligned_cols=116 Identities=8% Similarity=-0.000 Sum_probs=68.2
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC---CcCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV---RKEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~dIk-- 224 (423)
+.++++.+ +.++++++++|++|+++-++.- ..+.. ..+... .-+......++++++. +++|++
T Consensus 87 ~~~~~~~~-~~~~~~~l~~G~~D~~~~~~~~-----~~~r~-----~~~~~s-~p~~~~~~~~~~~~~~~i~~~~dL~g~ 154 (292)
T 1xt8_A 87 KVQFVLVE-AANRVEFLKSNKVDIILANFTQ-----TPQRA-----EQVDFC-SPYMKVALGVAVPKDSNITSVEDLKDK 154 (292)
T ss_dssp CEEEEECC-GGGHHHHHHTTSCSEECSSCBC-----CHHHH-----TTEEEC-CCCEEEEEEEEEETTCCCCSSGGGTTS
T ss_pred eEEEEEcC-HHHHHHHHhCCCeeEEeecCCC-----Ccchh-----cceeee-ccceecceEEEEECCCCCCCHHHhCCC
Confidence 45677765 6899999999999987533210 11111 111111 1223345567776653 334442
Q ss_pred EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|..-. ... ...++.+.+++..++.+.+..++.+.+..+ +-.|++.....+..
T Consensus 155 ~i~~~~-g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~L~~G--~vDa~~~~~~~~~~ 207 (292)
T 1xt8_A 155 TLLLNK-GTT-ADAYFTQNYPNIKTLKYDQNTETFAALMDK--RGDALSHDNTLLFA 207 (292)
T ss_dssp EEEEET-TSH-HHHHHHHHCTTSEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHHH
T ss_pred EEEEeC-CCc-HHHHHHHhCCCceEEEcCCHHHHHHHHHcC--CccEEEecHHHHHH
Confidence 454432 222 245666666777888888999999999876 45677777655543
No 94
>2iee_A ORF2, probable ABC transporter extracellular-binding protein YCKB; SR574, NESG, X-RAY, structural genomics, PSI-2; 2.20A {Bacillus subtilis}
Probab=61.42 E-value=19 Score=32.42 Aligned_cols=95 Identities=13% Similarity=0.073 Sum_probs=56.8
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHH--HHHHHcCCcCeEEEeeccCCCCchHHHHH-HhhcCCcEEE-EE
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVA--FQAVELWIADRAVLPVENSLGGSIHRNYD-LLLRHRLHIV-GE 203 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~V--f~aV~~g~~d~gVVPIENS~~G~V~~tlD-lL~~~~L~Iv-gE 203 (423)
.+||+ +.|+..+....+ ++. +++.+.+.+++ +++|.+|++| +++.-. .....+. .....++.+. +.
T Consensus 133 ~~i~v--~~g~~~~~~l~~-~~~-~~~~~~~~~~~~l~~~L~~GrvD-~i~~~~-----~~~~~~~~~~~~~~~~~~~~~ 202 (271)
T 2iee_A 133 KKAAG--AATTVYMEVARK-YGA-KEVIYDNATNEQYLKDVANGRTD-VILNDY-----YLQTLALAAFPDLNITIHPDI 202 (271)
T ss_dssp CEEES--CTTSHHHHHHHH-TTC-EEEECSSCCHHHHHHHHHHTSSC-EEEEEH-----HHHHHHHHHCTTSSCEECSSC
T ss_pred CEEEE--eCCccHHHHHHH-cCC-ceEEeCChhhHHHHHHHHcCCcc-EEeccH-----HHHHHHHHhCCCCceEEecCC
Confidence 47887 478877766544 343 78899999999 9999999999 776422 1111111 1112356665 43
Q ss_pred EEEeeeeeeeecCCCCcCcccEEEechhHHHHHHHHHHHc
Q 014547 204 VQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243 (423)
Q Consensus 204 i~lpI~h~Lla~~g~~l~dIk~VySHPqAL~QC~~fL~~~ 243 (423)
...+..++++.+++ +|+-..+-.+.|.+.
T Consensus 203 ~~~~~~~~~~~~k~-----------~~~l~~~ln~al~~l 231 (271)
T 2iee_A 203 KYMPNKQALVMKKS-----------NAALQKKMNEALKEM 231 (271)
T ss_dssp CEEEEEECCEEETT-----------CHHHHHHHHHHHHHH
T ss_pred CcccceEEEEEcCC-----------CHHHHHHHHHHHHHH
Confidence 33444555655543 355556666666553
No 95
>3ho7_A OXYR; beta-alpha-barrels, DNA-binding, transcription, transcriptio regulation; 1.58A {Porphyromonas gingivalis}
Probab=61.13 E-value=55 Score=27.62 Aligned_cols=137 Identities=9% Similarity=-0.029 Sum_probs=73.6
Q ss_pred CccEEEEeCCCccH-HHHHH---hhhCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEE
Q 014547 126 SQLRVAYQGVPGAY-SEAAA---GKAYPNCEAIP-CDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHI 200 (423)
Q Consensus 126 ~~~~VayLGP~GTf-Sh~AA---~~~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 200 (423)
+..+||+...-+.+ --... .+.+|+.++.. ..+..++.+.|.+|++|+|++.-.... .+ +
T Consensus 11 g~l~Ig~~~~~~~~~l~~~l~~~~~~~P~v~i~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-------------~~--l 75 (232)
T 3ho7_A 11 GRLNIAVLPTIAPYLLPRVFPIWKKELAGLEIHVSEMQTSRCLASLLSGEIDMAIIASKAET-------------EG--L 75 (232)
T ss_dssp EEEEEEECTTTHHHHHHHHHHHHHHHSTTEEEEEEECCHHHHHHHHHHTSCSEEEESSCCCC-------------TT--E
T ss_pred eeEEEEeccccchhhhHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEcCCCCC-------------CC--e
Confidence 35677776544332 11111 12467766533 356789999999999999998643111 11 2
Q ss_pred EEEEEEeeeeeeeecCCC--------CcCcc---cEEEechh--HHHHHHHHHHHcCCc--eeEEeccCHHHHHHHHHhc
Q 014547 201 VGEVQLPVHHCLLALPGV--------RKEYL---TRVISHPQ--ALSQCEHTLTKLGLN--VAREAVDDTAGAAEYIAAN 265 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g~--------~l~dI---k~VySHPq--AL~QC~~fL~~~~p~--~~~v~~~STA~AA~~va~~ 265 (423)
..+.......++++.++- +++++ .-|...+. .-.+..+++.+.+.. -....++|...+.++++.+
T Consensus 76 ~~~~l~~~~~~~v~~~~hpl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g 155 (232)
T 3ho7_A 76 EDDLLYYEEFLGYVSRCEPLFEQDVIRTTEVNPHRLWLLDEGHCFRDQLVRFCQMKGLHERQTAYSGGSMEAFMRLVESG 155 (232)
T ss_dssp EEEEEEEEEEEEEECTTSGGGGSSSBCGGGCCGGGBCCCTTTTTTTSTTHHHHTCTTTTCSSEEEESCCHHHHHHHHHTT
T ss_pred EEEEecccCEEEEEcCCCccccCCCcCHHHhcCCCEEEecCCCcHHHHHHHHHHHcCCCcCceeEEeCCHHHHHHHHHcC
Confidence 333344445566655442 22232 22222211 123456666655422 2345567777777777765
Q ss_pred CCCCeeEEccHHHHH
Q 014547 266 DLRDTAAIASARAAE 280 (423)
Q Consensus 266 ~~~~~AAIaS~~AAe 280 (423)
...+|.+...++
T Consensus 156 ---~gi~~~p~~~~~ 167 (232)
T 3ho7_A 156 ---QGITFIPQLTVE 167 (232)
T ss_dssp ---CCEEEEEGGGGG
T ss_pred ---CcEEEecHHHhh
Confidence 456676666554
No 96
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A
Probab=59.54 E-value=30 Score=30.73 Aligned_cols=116 Identities=8% Similarity=-0.075 Sum_probs=65.6
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC-----CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV-----RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~dIk 224 (423)
+.++++. ++.++++++++|++|.++-.+-.+- +- . ..+... +-+......++.+++. +++|++
T Consensus 69 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t~-----~r-~----~~~~fs-~p~~~~~~~~~~~~~~~~~i~~~~dL~ 136 (259)
T 4dz1_A 69 KLNITEY-AWDGMLGAVASGQADVAFSGISITD-----KR-K----KVIDFS-EPYYINSFYLVSMANHKITLNNLNELN 136 (259)
T ss_dssp EEEEEEC-CHHHHHHHHHHTSSSEEEEEEECCH-----HH-H----TTEEEC-CCSEEEEEEEEEETTSCCCCCSGGGGG
T ss_pred eEEEEEc-CHHHHHHHHhCCCCCEEEECCcCCH-----HH-h----hccccc-cchhhCceEEEEEcCCCCCCCCHHHhC
Confidence 4677887 8999999999999999765543221 11 1 111111 1122233445554321 234442
Q ss_pred --EEEechhHHHHHHHHHHHcCCc------eeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 --RVISHPQALSQCEHTLTKLGLN------VAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 --~VySHPqAL~QC~~fL~~~~p~------~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....-.. -..++.+..++ ..++.+.+..++.+.+..+ +-.|++.....+..
T Consensus 137 g~~v~v~~g~~--~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~~ 197 (259)
T 4dz1_A 137 KYSIGYPRGMA--YSDLIKNDLEPKGYYSLSKVKLYPTYNETMADLKNG--NLDLAFIEEPVYFT 197 (259)
T ss_dssp GSCEEEETTST--HHHHHHHHTGGGTSCCGGGCEEESSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred CCEEEEeCCcH--HHHHHHHhcccccccccceeEecCCHHHHHHHHHcC--CCCEEEecHHHHHH
Confidence 343322111 13455554443 5677788999999999886 46788877765543
No 97
>2xwv_A Sialic acid-binding periplasmic protein SIAP; transport protein, trap, sugar transport; HET: SLB; 1.05A {Haemophilus influenzae} PDB: 2xxk_A* 2xa5_A* 2wyp_A* 2wx9_A* 2xwo_A* 2xwk_A* 2v4c_A* 2wyk_A* 2xwi_A* 3b50_A* 2cey_A 2cex_A
Probab=58.96 E-value=1.2e+02 Score=28.69 Aligned_cols=172 Identities=6% Similarity=-0.057 Sum_probs=96.1
Q ss_pred ccEEEEeCCCccHHHHHHhhhC--------CCCceeecCC-----HHHHHHHHHcCCcCeEEEeeccC------------
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAY--------PNCEAIPCDQ-----FEVAFQAVELWIADRAVLPVENS------------ 181 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f--------~~~e~vp~~S-----f~~Vf~aV~~g~~d~gVVPIENS------------ 181 (423)
.+|+++.-|+|+-.+.++.++- +..++..+.+ -.+++++|..|.+|.+++..-+-
T Consensus 4 ~lk~~~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~~~g~Lg~~~~~~e~v~~G~id~~~~~~~~~~~~~P~~~~~~l 83 (312)
T 2xwv_A 4 DLKFGMNAGTSSNEYKAAEMFAKEVKEKSQGKIEISLYPSSQLGDDRAMLKQLKDGSLDFTFAESARFQLFYPEAAVFAL 83 (312)
T ss_dssp EEEEECSSCTTSHHHHHHHHHHHHHHHHTTTSEEEEEECTTTTCCHHHHHHHHHHTSCCEEEECGGGGGGTSGGGGGGGS
T ss_pred EEEEEecCCCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCCCCCCHHHHHHHHHCCCceEEEeCchhhhhhccchhhhcC
Confidence 4789998888988888876531 2234444443 48999999999999998864210
Q ss_pred -------------C-CCchH-HHHHHh-hcCCcEEEEEEEEeeeeeeeecCC-CCcCccc--EEEechhHHHHHHHHHHH
Q 014547 182 -------------L-GGSIH-RNYDLL-LRHRLHIVGEVQLPVHHCLLALPG-VRKEYLT--RVISHPQALSQCEHTLTK 242 (423)
Q Consensus 182 -------------~-~G~V~-~tlDlL-~~~~L~IvgEi~lpI~h~Lla~~g-~~l~dIk--~VySHPqAL~QC~~fL~~ 242 (423)
+ .|.+. +.++.+ .+.++++.+-......+ +..++. .+++|++ +|..-+.. -...+++.
T Consensus 84 Pfl~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~g~~~-~~~~~pI~s~~DlkGlKiRv~~~~--~~~~~~~a 160 (312)
T 2xwv_A 84 PYVISNYNVAQKALFDTEFGKDLIKKMDKDLGVTLLSQAYNGTRQ-TTSNRAINSIADMKGLKLRVPNAA--TNLAYAKY 160 (312)
T ss_dssp TTTSCSHHHHHHHHHSSHHHHHHHHHHHHHHCEEEEEEEEEEEEE-EEESSCCCSGGGGTTCEEEECSCH--HHHHHHHH
T ss_pred CcccCCHHHHHHHHhcCHHHHHHHHHHHHhCCeEEEEeeccCcee-eecCCCcCCHHHhCCCEEEeCCCH--HHHHHHHH
Confidence 1 12221 112222 23578888877766654 344333 3456666 55544322 23567888
Q ss_pred cCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCccCCCCCee-EEEEEee
Q 014547 243 LGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNVT-RFVMLAR 306 (423)
Q Consensus 243 ~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nIqD~~~N~T-RFlVLsr 306 (423)
.+......+. ++....+..+ .-.|+..+.......++.=+.+.+.......+ -++++++
T Consensus 161 lGa~pv~m~~---~Evy~ALq~G--~vDg~~~~~~~~~~~~~~ev~ky~~~~~~~~~~~~~~~n~ 220 (312)
T 2xwv_A 161 VGASPTPMAF---SEVYLALQTN--AVDGQENPLAAVQAQKFYEVQKFLAMTNHILNDQLYLVSN 220 (312)
T ss_dssp HTCEEEECCG---GGHHHHHHTT--SSSEEEEEHHHHHHTTGGGSCSEEECCCCCEEEEEEEEEH
T ss_pred cCCeeeecCH---HHHHHHHHcC--CcceEeccHHHHhhcchhhccceEEecCccccceEEEEeH
Confidence 8754333333 3334444443 34566666555555566544555544333443 3444544
No 98
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=58.51 E-value=46 Score=31.50 Aligned_cols=82 Identities=17% Similarity=0.076 Sum_probs=53.5
Q ss_pred cEEEEeCCCccHHHHHHhhh-CC--C------CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhc---
Q 014547 128 LRVAYQGVPGAYSEAAAGKA-YP--N------CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLR--- 195 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~-f~--~------~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~--- 195 (423)
.+|+|-.+-.+..|.+...+ +. + .+.++..+..+++.+|..|++|.+++... ++..+.+
T Consensus 117 k~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~~~~~~~al~~G~vDa~~~~~~---------~~~~~~~~~~ 187 (310)
T 3n5l_A 117 LTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSSHEVNALAVANKQVDVATFNTE---------GMERLELTQP 187 (310)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHHHHHHCH
T ss_pred CEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCCHHHHHHHHHcCCccEEEecch---------hHHHHHHhCc
Confidence 38888666555556655432 22 2 34566688999999999999999998732 3333322
Q ss_pred ---CCcEEEEEEEEeeeeeeeecCCC
Q 014547 196 ---HRLHIVGEVQLPVHHCLLALPGV 218 (423)
Q Consensus 196 ---~~L~IvgEi~lpI~h~Lla~~g~ 218 (423)
..++++++...--.+.++++++.
T Consensus 188 ~~~~~lrvl~~s~~~p~~~i~~~~~~ 213 (310)
T 3n5l_A 188 EKARQLKVIWKSPLIPGDPLVWRNNL 213 (310)
T ss_dssp HHHTTEEEEEEEEEEECCEEEEETTS
T ss_pred cchhCEEEEEECCCCCCCcEEEECCC
Confidence 46888886544335677777764
No 99
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=55.82 E-value=1.4e+02 Score=28.39 Aligned_cols=145 Identities=10% Similarity=0.039 Sum_probs=76.4
Q ss_pred CCccEEEEeCCCccHHHHHH----hhh----CC-CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhc
Q 014547 125 GSQLRVAYQGVPGAYSEAAA----GKA----YP-NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLR 195 (423)
Q Consensus 125 ~~~~~VayLGP~GTfSh~AA----~~~----f~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~ 195 (423)
....+||++.-.....-... .++ .+ .+++++..++.++++++..|++|++++. ... ......+
T Consensus 13 ~~~l~~Gv~p~~~~~~~~~~~~~l~~~L~k~lG~~ve~~~~~~~~~~i~aL~~G~vDia~~~-------~~~-~~~~~~~ 84 (321)
T 3p7i_A 13 EKALNFGIISTESQQNLKPQWTPFLQDMEKKLGVKVNAFFAPDYAGIIQGMRFNKVDIAWYG-------NLS-AMEAVDR 84 (321)
T ss_dssp -CCEEEEECCSSCHHHHHHHHHHHHHHHHHHHTSCEEEECCSSHHHHHHHHHTTSCSEEECC-------HHH-HHHHHHH
T ss_pred CCcEEEEEecCCCHHHHHHHHHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHcCCCcEEEEC-------hHH-HHHHHHh
Confidence 34678999876655432221 111 12 4677888999999999999999999652 111 1122223
Q ss_pred CCcEEEEEEE----Eee-eeeeeecCCC---CcCcc----c--EEE-echhHH---HHHHH-HHHHcCCc---eeEEecc
Q 014547 196 HRLHIVGEVQ----LPV-HHCLLALPGV---RKEYL----T--RVI-SHPQAL---SQCEH-TLTKLGLN---VAREAVD 253 (423)
Q Consensus 196 ~~L~IvgEi~----lpI-~h~Lla~~g~---~l~dI----k--~Vy-SHPqAL---~QC~~-fL~~~~p~---~~~v~~~ 253 (423)
.+..++.... .|- ...|+++++. +++|+ + +|. ..+-.. --.+. ++.+.+.. ++.++..
T Consensus 85 ~~~~~~a~~~~~~g~~~y~~~lvv~~ds~i~sl~DL~~~~kgk~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~ 164 (321)
T 3p7i_A 85 ANGQVFAQTVAADGSPGYWSVLIVNKDSPINNLNDLLAKRKDLTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNA 164 (321)
T ss_dssp SCEEEEEEEEETTCCSSBCEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEEC
T ss_pred cCCEEEEEEeccCCCcceEEEEEEECCCCCCCHHHHHhhcCCCEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecC
Confidence 4555444321 121 2356777664 34555 2 343 233221 11122 23444432 3345566
Q ss_pred CHHHHHHHHHhcCCCCeeEEccHHHH
Q 014547 254 DTAGAAEYIAANDLRDTAAIASARAA 279 (423)
Q Consensus 254 STA~AA~~va~~~~~~~AAIaS~~AA 279 (423)
+...++..+..+ .-.|++.....+
T Consensus 165 ~~~~a~~al~~G--~vDa~~~~~~~~ 188 (321)
T 3p7i_A 165 GHETNALAVANK--QVDVATNNTENL 188 (321)
T ss_dssp CHHHHHHHHHTT--SSSEEEEEHHHH
T ss_pred CHHHHHHHHHCC--CceEEEechHHH
Confidence 677788888765 345666554433
No 100
>2x7q_A Ca3427, possible thiamine biosynthesis enzyme; unknown function; 2.00A {Candida albicans} PDB: 2x7p_A
Probab=55.02 E-value=1.3e+02 Score=27.85 Aligned_cols=132 Identities=14% Similarity=0.063 Sum_probs=73.8
Q ss_pred CccEEEEeCCCccHHHHHHhh--hCC----CCceeecCCHH-HHHHHHHcCCcCeEEEeeccCCCCchHHHHHHh-hcCC
Q 014547 126 SQLRVAYQGVPGAYSEAAAGK--AYP----NCEAIPCDQFE-VAFQAVELWIADRAVLPVENSLGGSIHRNYDLL-LRHR 197 (423)
Q Consensus 126 ~~~~VayLGP~GTfSh~AA~~--~f~----~~e~vp~~Sf~-~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL-~~~~ 197 (423)
..++|+|+.-.+...-..|.+ +|. +++++...+-. .++++|..|++|+++.... ..+... ...+
T Consensus 15 ~~l~ig~~~~~~~~p~~~A~~~G~~~~~Gl~V~~~~~~~g~~~~~~al~~G~~D~~~~~~~--------~~~~~~~~g~~ 86 (321)
T 2x7q_A 15 PTLKVAYIPEHFSTPLFFAQQQGYYKAHDLSIEFVKVPEGSGRLINLLNSNEVDIAIGLTE--------AFIADIAKGNE 86 (321)
T ss_dssp CCEEEEECCSGGGHHHHHHHHTTHHHHTTCCEEEEECTTCHHHHHHHHHTTSCSEEEEEHH--------HHHHHHHTTCT
T ss_pred ceEEEEeeCCccchHHHHHHHCCcHHHCCceEEEEECCCCHHHHHHHHHcCCccEEecCcH--------HHHHHHHCCCC
Confidence 357899984433322333332 442 35677766643 5899999999999986532 112222 2234
Q ss_pred -cEEEEEEEE-eeeeeeeecCCC----CcCcccEEEech-hHHH-HHHHHH-HHcCCc--eeEEeccCHHHHHHHHHhc
Q 014547 198 -LHIVGEVQL-PVHHCLLALPGV----RKEYLTRVISHP-QALS-QCEHTL-TKLGLN--VAREAVDDTAGAAEYIAAN 265 (423)
Q Consensus 198 -L~IvgEi~l-pI~h~Lla~~g~----~l~dIk~VySHP-qAL~-QC~~fL-~~~~p~--~~~v~~~STA~AA~~va~~ 265 (423)
+.+++-+.- |..+.|+++++. +++|+|+|.... -.-. ....+| ++.+.. ++++.+.+..++...+..+
T Consensus 87 ~~~~v~~~~~~~~~~~i~v~~ds~~i~s~~DLK~i~~~~~gs~~~~~~~~l~~~~Gl~~dv~~v~~~~~~~~~~al~~G 165 (321)
T 2x7q_A 87 NIHVLDTYVKSPLLWAVSTGSNRDDVTDAKQLKRIGVSRIGSGSYVMSFVLAHQLGVPSFDQFQVLSNFKNLRDSVNLK 165 (321)
T ss_dssp TEEEEEEEECSCCEEEEEEESSCTTCSSGGGCCEEEESSTTSHHHHHHHHHHHHHTSCCCCEEEECCSHHHHHHHHTTC
T ss_pred cEEEEEEecCCCcceEEEECCCCCCCCChHHcceEEeeCCCcHHHHHHHHHHHhcCCCcceEEEEcCChHHHHHHHHcC
Confidence 888776543 322457766433 345557776553 1111 223344 444433 5677776777777777654
No 101
>3mah_A Aspartokinase; aspartate kinase, structural genomics, MCSG, transferase, PSI-2; 2.31A {Porphyromonas gingivalis}
Probab=54.81 E-value=11 Score=32.59 Aligned_cols=51 Identities=10% Similarity=0.145 Sum_probs=38.9
Q ss_pred eCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHh
Q 014547 325 HDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQE 399 (423)
Q Consensus 325 l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~ 399 (423)
.++.||.+.++++.|+++|||+-.|-+-+ -...|.|+= . + .+++++++|++
T Consensus 28 m~~~~g~~~~if~~La~~~I~vd~I~~s~-------------------~~Isf~v~~-~---~-~~~~il~~l~~ 78 (157)
T 3mah_A 28 KLLSWHFMRKLFEIFEFYQEPVDMVATSE-------------------VGVSLTIDN-D---K-NLPDIVRALSD 78 (157)
T ss_dssp TSCHHHHHHHHHHHHHHTTCCCSCEECCS-------------------SEEEEEESC-C---T-THHHHHHHHTT
T ss_pred CCCchhHHHHHHHHHHHcCCCEEEEEecC-------------------CEEEEEECC-h---H-HHHHHHHHHhc
Confidence 35689999999999999999999887522 257788872 1 2 56778888875
No 102
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=54.74 E-value=50 Score=28.54 Aligned_cols=117 Identities=9% Similarity=-0.003 Sum_probs=63.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC---CcCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV---RKEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~dIk-- 224 (423)
+.++++. +..++++++++|++|+++..+.-+ .+..+ .+.... -+......|+++++. +++|++
T Consensus 82 ~v~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~-----~~~~~-----~~~~~~-p~~~~~~~~~~~~~~~i~~~~dL~g~ 149 (259)
T 2v25_A 82 KIKLVAV-NAKTRGPLLDNGSVDAVIATFTIT-----PERKR-----IYNFSE-PYYQDAIGLLVLKEKKYKSLADMKGA 149 (259)
T ss_dssp SEEEEEC-CTTTHHHHHHTTSCSEECSSCBCC-----HHHHT-----TEEECS-CSEEEEEEEEEEGGGCCCSGGGCTTC
T ss_pred ceEEEEc-CHHHHHHHHhCCCCCEEEecCccC-----HHHHh-----cCcccc-cceeCceEEEEeCCCCCCCHHHhCCC
Confidence 3566777 458999999999999986543211 11111 111111 112223455555432 233332
Q ss_pred EEEech--hHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 RVISHP--QALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 ~VySHP--qAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|.... ......++++.+.+.....+.+.+..++.+.+..+ .-.|++.....+.
T Consensus 150 ~i~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~g--~vDa~~~~~~~~~ 205 (259)
T 2v25_A 150 NIGVAQAATTKKAIGEAAKKIGIDVKFSEFPDYPSIKAALDAK--RVDAFSVDKSILL 205 (259)
T ss_dssp EEEEETTCSHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHT
T ss_pred EEEEecCCchHHHHHHHHHhcCCceeEEEeCCHHHHHHHHHcC--CCcEEEecHHHHH
Confidence 343221 12233445555554444667788889999998876 3567777766544
No 103
>4go7_X Aspartokinase; transferase; 2.00A {Mycobacterium tuberculosis} PDB: 4go5_X
Probab=54.21 E-value=56 Score=29.93 Aligned_cols=31 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred EeCCCccHHHHHHHHHHhCCceeeeeeeeeC
Q 014547 324 AHDKGTSVLFKVLSAFAFRNISLTKIESRPH 354 (423)
Q Consensus 324 ~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~ 354 (423)
.++++||.+.++++.|+++|||+-.|-.-++
T Consensus 42 g~~~~pG~aa~IF~~La~~~InVDmI~Qs~s 72 (200)
T 4go7_X 42 GLPDIPGYAAKVFRAVADADVNIDMVLQNVS 72 (200)
T ss_dssp EEECSTTHHHHHHHHHHHTTCCCCCEECCCC
T ss_pred cCCCCccHHHHHHHHHHHhCcceEEEeeccc
Confidence 5789999999999999999999999965443
No 104
>3s1t_A Aspartokinase; ACT domain, threonine binding, regulatory domain of aspartok transferase; 1.63A {Mycobacterium tuberculosis}
Probab=53.82 E-value=28 Score=31.01 Aligned_cols=60 Identities=13% Similarity=0.104 Sum_probs=39.8
Q ss_pred EeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHH
Q 014547 324 AHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQ 398 (423)
Q Consensus 324 ~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~ 398 (423)
.++++||.+.++++.|+++|||+-.|..-.+... -| .....|.|+-+ +-+...++|++++
T Consensus 23 ~~~~~~G~~a~If~~La~~~I~vd~I~q~~s~~~---------~g---~~~isftv~~~---~~~~a~~~L~~~~ 82 (181)
T 3s1t_A 23 GLPDIPGYAAKVFRAVADADVNIDMVLQNVSKVE---------DG---KTDITFTCSRD---VGPAAVEKLDSLR 82 (181)
T ss_dssp EEESSTTHHHHHHHHHHHTTCCCCCEEECCCCTT---------TC---EEEEEEEEETT---THHHHHHHHHHTH
T ss_pred cCCCCcCHHHHHHHHHHHcCCcEEEEEecCCccc---------CC---ccEEEEEEehh---HHHHHHHHHHHHH
Confidence 4778999999999999999999998864222100 00 12567777643 1245566676654
No 105
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=53.81 E-value=1.2e+02 Score=26.87 Aligned_cols=136 Identities=14% Similarity=0.043 Sum_probs=70.2
Q ss_pred CccEEEEeCCCcc-HHHHHHh---hhCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEE
Q 014547 126 SQLRVAYQGVPGA-YSEAAAG---KAYPNCEAIP-CDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHI 200 (423)
Q Consensus 126 ~~~~VayLGP~GT-fSh~AA~---~~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 200 (423)
+..+||+...-+. +--.... +.+|+.++.. ..+-+++.+.+.+|++|+|++...... .+ +
T Consensus 91 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~~-------------~~--l 155 (294)
T 1ixc_A 91 GELSVAYFGTPIYRSLPLLLRAFLTSTPTATVSLTHMTKDEQVEGLLAGTIHVGFSRFFPRH-------------PG--I 155 (294)
T ss_dssp EEEEEEECSGGGGTHHHHHHHHHHHHCTTEEEEEEECCHHHHHHHHHHTSCSEEEESCCCCC-------------TT--E
T ss_pred ceEEEEEccchhHHHHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHCCCccEEEEecCCCC-------------CC--c
Confidence 3577877654432 2122222 2368766533 345678899999999999998643211 11 1
Q ss_pred EEEEEEeeeeeeeecCC--------CCcCcc---cEEEec----hhHHHHHHHHHHHcCCcee-EEeccCHHHHHHHHHh
Q 014547 201 VGEVQLPVHHCLLALPG--------VRKEYL---TRVISH----PQALSQCEHTLTKLGLNVA-REAVDDTAGAAEYIAA 264 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g--------~~l~dI---k~VySH----PqAL~QC~~fL~~~~p~~~-~v~~~STA~AA~~va~ 264 (423)
..+.......++++.++ .+++++ .-|.-. +..-....+|+.+++.... ...++|...+.+++..
T Consensus 156 ~~~~l~~~~~~~v~~~~~pl~~~~~~~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~ 235 (294)
T 1ixc_A 156 EIVNIAQEDLYLAVHRSQSGKFGKTCKLADLRAVELTLFPRGGRPSFADEVIGLFKHAGIEPRIARVVEDATAALALTMA 235 (294)
T ss_dssp EEEEEEEEEEEEEEEGGGGGGTCSEECGGGGTTCEEEECCCSSSSCHHHHHHHHHHHTTCCCEEEEECSSHHHHHHHHHT
T ss_pred eEEEEeeccEEEEEeCCCccccCCccCHHHHcCCCEEeeCCCCCchHHHHHHHHHHHCCCCcceeeecCCHHHHHHHHHc
Confidence 11222222333333322 233333 344433 1223455667776543222 3456677777777776
Q ss_pred cCCCCeeEEccHHHH
Q 014547 265 NDLRDTAAIASARAA 279 (423)
Q Consensus 265 ~~~~~~AAIaS~~AA 279 (423)
+ ...++.+...+
T Consensus 236 g---~Gia~lp~~~~ 247 (294)
T 1ixc_A 236 G---AASSIVPASVA 247 (294)
T ss_dssp T---SCBEEEEHHHH
T ss_pred C---CeEEEechhhh
Confidence 5 34666666543
No 106
>3p7i_A PHND, subunit of alkylphosphonate ABC transporter; phosphonate binding protein, transport protein; 1.71A {Escherichia coli UTI89} PDB: 3qk6_A 3quj_A* 3s4u_A
Probab=53.11 E-value=15 Score=35.47 Aligned_cols=82 Identities=17% Similarity=0.049 Sum_probs=52.7
Q ss_pred cEEEEeCCCccHHHHHHhhh-CC--C-----CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-----
Q 014547 128 LRVAYQGVPGAYSEAAAGKA-YP--N-----CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL----- 194 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~-f~--~-----~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~----- 194 (423)
.+|+|-.|-++..|.+...+ +. + .+.++..+..+++.+|..|++|.+++... ++..+.
T Consensus 127 k~va~~~~gsts~~l~~~~~l~~~~Gi~~~~~~~v~~~~~~~a~~al~~G~vDa~~~~~~---------~~~~~~~~~p~ 197 (321)
T 3p7i_A 127 LTFGNGDPNSTSGFLVPGYYVFAKNNISASDFKRTVNAGHETNALAVANKQVDVATNNTE---------NLDKLKTSAPE 197 (321)
T ss_dssp CEEEECCTTCTTTTHHHHHHTTGGGTCCGGGSSEEEECCHHHHHHHHHTTSSSEEEEEHH---------HHHTHHHHCHH
T ss_pred CEEEeCCCCccHHHHHHHHHHHHHcCCChhHceeeecCCHHHHHHHHHCCCceEEEechH---------HHHHHHHhCcc
Confidence 48998666666556665442 21 1 33467788999999999999999998632 233232
Q ss_pred -cCCcEEEEEEEEeeeeeeeecCCC
Q 014547 195 -RHRLHIVGEVQLPVHHCLLALPGV 218 (423)
Q Consensus 195 -~~~L~IvgEi~lpI~h~Lla~~g~ 218 (423)
..+++|+++...--.+.++++++.
T Consensus 198 ~~~~lrvl~~s~~~p~~~i~~~k~~ 222 (321)
T 3p7i_A 198 KLKELKVIWKSPLIPGDPIVWRKNL 222 (321)
T ss_dssp HHTTEEEEEECSCBCCCEEEEETTS
T ss_pred hhccEEEEEEcCCCCCCceeeeCCC
Confidence 246888875432224567777664
No 107
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=52.36 E-value=28 Score=30.19 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.0
Q ss_pred EeCCCccHHHHHHHHHHhCCceeeeeee
Q 014547 324 AHDKGTSVLFKVLSAFAFRNISLTKIES 351 (423)
Q Consensus 324 ~l~~~pGaL~~vL~~Fa~~~INLtkIES 351 (423)
..+++||.+.++++.|+++|||+-.|-.
T Consensus 23 g~~~~~G~~a~if~~La~~~InVd~I~q 50 (167)
T 2dt9_A 23 GIPDQPGIAAKVFQALAERGIAVDMIIQ 50 (167)
T ss_dssp EEECSTTHHHHHHHHHHHHTCCCSCEEB
T ss_pred cCCCCCCHHHHHHHHHHHcCCcEEEEEc
Confidence 3578899999999999999999998865
No 108
>3qsl_A Putative exported protein; unknown, structural genomics, PSI-biology, midwest center FO structural genomics, MCSG, unknown function; HET: MSE CIT; 2.00A {Bordetella bronchiseptica}
Probab=51.97 E-value=15 Score=34.06 Aligned_cols=49 Identities=12% Similarity=0.027 Sum_probs=38.1
Q ss_pred cEEEEeCCCccHHHHHHhhhC---C----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY---P----NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f---~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++.| .||-+|.....++ + +.++++..+..+++.++.+|++|.++++
T Consensus 139 k~i~~~~-~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~~~~~~al~~G~vDa~~~~ 194 (346)
T 3qsl_A 139 RKIGVTA-PGSSTNMVVNFFLAKHGLKASDVSFIGVGAGAGAVTALRSGQIDAISNT 194 (346)
T ss_dssp CEEEESS-TTSHHHHHHHHHHHHTTCCGGGSEEEECCSSHHHHHHHHHTSCSEEEEE
T ss_pred CEEEECC-CCcHHHHHHHHHHHHcCCCHHHeEEEecCCcHHHHHHHHcCCccEEEec
Confidence 4899876 4776676655432 1 4678899999999999999999999885
No 109
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A*
Probab=51.21 E-value=17 Score=31.87 Aligned_cols=115 Identities=7% Similarity=-0.073 Sum_probs=67.0
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC-----CcCccc-
Q 014547 151 CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV-----RKEYLT- 224 (423)
Q Consensus 151 ~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~-----~l~dIk- 224 (423)
.++++. ++.++++++++|++|+++-++.-+ .+-.+ .+... .-+......|+++++. +++|++
T Consensus 54 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t-----~~r~~-----~~~~s-~p~~~~~~~~~~~~~~~~~i~~~~dL~~ 121 (257)
T 2q88_A 54 VVASIS-EYGAMIPGLQAGRHDAITAGLFMK-----PERCA-----AVAYS-QPILCDAEAFALKKGNPLGLKSYKDIAD 121 (257)
T ss_dssp EEEEEC-CGGGHHHHHHTTSCSEECSCCBCC-----HHHHT-----TSEEC-SCCCEECEEEEEETTCTTCCCBHHHHHH
T ss_pred eeEEeC-CHHHHHHHHHCCCcCEEEecccCC-----HHHHh-----ccccc-cchhcCceEEEEECCCccCCCCHHHHhc
Confidence 566776 489999999999999876443211 11111 11111 1122334566766653 233443
Q ss_pred ----EEEechhHHHHHHHHHHHc-CCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 225 ----RVISHPQALSQCEHTLTKL-GLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 225 ----~VySHPqAL~QC~~fL~~~-~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+|....- ... ..+|.+. .++.+++.+.+..++.+++..+ +-.|+|.....+..
T Consensus 122 ~~g~~i~~~~g-~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~l~~g--rvDa~i~~~~~~~~ 179 (257)
T 2q88_A 122 NPDAKIGAPGG-GTE-EKLALEAGVPRDRVIVVPDGQSGLKMLQDG--RIDVYSLPVLSIND 179 (257)
T ss_dssp CTTCCEEECTT-SHH-HHHHHHTTCCGGGEEECSSHHHHHHHHHHT--SCSEEEEEHHHHHH
T ss_pred cCCceEEEECC-ccc-HHHHHhcCCCCceEEEcCCHHHHHHHHHcC--CCcEEEcCHHHHHH
Confidence 3433222 222 3466665 4666788889999999999886 46778877665543
No 110
>1r9l_A Glycine betaine-binding periplasmic protein; periplasmic binding protein, cation-PI interactions, tryptophan BOX, protein binding; 1.59A {Escherichia coli} SCOP: c.94.1.1 PDB: 1r9q_A*
Probab=48.71 E-value=1.8e+02 Score=27.49 Aligned_cols=162 Identities=8% Similarity=-0.027 Sum_probs=89.5
Q ss_pred CCCccEEEEeCCCccH--HHHHHhhhC---C-CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-cC
Q 014547 124 HGSQLRVAYQGVPGAY--SEAAAGKAY---P-NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-RH 196 (423)
Q Consensus 124 ~~~~~~VayLGP~GTf--Sh~AA~~~f---~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~ 196 (423)
.+..++|++..-.... ++.++ +.+ + +++.++..+-..+++++.+|++|+.+--.-+. ....|+... +.
T Consensus 6 ~~~~I~ig~~~~~e~~~~~~i~~-~~Le~~Gy~Ve~~~~~~~~~~~~Al~~G~iDi~~e~w~~~----~~~~~~~~~~~~ 80 (309)
T 1r9l_A 6 KGITVNPVQSTITEETFQTLLVS-RALEKLGYTVNKPSEVDYNVGYTSLASGDATFTAVNWTPL----HDNMYEAAGGDK 80 (309)
T ss_dssp TTCEECEEECSCGGGHHHHHHHH-HHHHHTTCEECCCEECCHHHHHHHHHHTSSCEEEEEEETT----THHHHHHTTGGG
T ss_pred CCceEEEeecCccHHHHHHHHHH-HHHHHcCCCeEEeecCchHHHHHHHhcCCceEEeccccCc----cHHHHHHhhcCC
Confidence 4446789987633222 12222 222 2 35555545778899999999999985322222 244555443 34
Q ss_pred CcEEEEEEEEeeeeeeeecC------C-CCcCccc----------------EEEechhHH---HHHHHHHHHcCCceeEE
Q 014547 197 RLHIVGEVQLPVHHCLLALP------G-VRKEYLT----------------RVISHPQAL---SQCEHTLTKLGLNVARE 250 (423)
Q Consensus 197 ~L~IvgEi~lpI~h~Lla~~------g-~~l~dIk----------------~VySHPqAL---~QC~~fL~~~~p~~~~v 250 (423)
++...+.....-.+.|++++ + .+++|++ +++.-|... ....+.|+..+.+..+.
T Consensus 81 ~l~~l~~~~~~~~~~l~V~~~~a~~~~i~si~DL~~~~~~~~f~~~~~gkg~~~~~~~G~~~~~~~~~~l~~yGL~~~~~ 160 (309)
T 1r9l_A 81 KFYREGVFVNGAAQGYLIDKKTADQYKITNIAQLKDPKIAKLFDTNGDGKADLTGCNPGWGCEGAINHQLAAYELTNTVT 160 (309)
T ss_dssp TEEECSCSEEEEEEEEEEEHHHHHHHTCCBGGGGGSHHHHGGGCSSSSSSEEEECCCTTSHHHHHHHHHHHHTTCTTTEE
T ss_pred cEEEecccCCCceEEEEEchhhhhhcCCCCHHHHcCchHHHHcCCCCCCCceEEecCCCcchhHHHHHHHHhcCCCCceE
Confidence 67777765555567788765 3 2467776 666655322 22355667665442122
Q ss_pred eccC-HH----HHHHHHHhcCCCCeeEE-ccHHHHHHc----CCceeecCc
Q 014547 251 AVDD-TA----GAAEYIAANDLRDTAAI-ASARAAELY----GMQVLEDGI 291 (423)
Q Consensus 251 ~~~S-TA----~AA~~va~~~~~~~AAI-aS~~AAelY----gL~ILa~nI 291 (423)
.+.+ .+ ...+.+ +.+....+.+ .+.-....| +|.+|+..-
T Consensus 161 ~~~~s~~~~~~~~~~A~-~~g~~~v~~~w~P~~~~~~~~~g~dl~~Le~~~ 210 (309)
T 1r9l_A 161 HNQGNYAAMMADTISRY-KEGKPVFYYTWTPYWVSNELKPGKDVVWLQVPF 210 (309)
T ss_dssp EECSCHHHHHHHHHHHH-HTTCCCEEEEEESSSHHHHSCBTTTEEECBCSS
T ss_pred EcCCCHHHHHHHHHHHH-HCCCCEEEEeecCchHhhhccccCCceEeccCc
Confidence 3333 32 222333 3334555555 444445567 999988764
No 111
>3oxn_A Putative transcriptional regulator, LYSR family; structural genomics, PSI-2, protein structure initiative; 2.70A {Vibrio parahaemolyticus}
Probab=48.67 E-value=83 Score=26.99 Aligned_cols=137 Identities=12% Similarity=-0.073 Sum_probs=70.2
Q ss_pred CccEEEEeCCCccH-HHHHH---hhhCCCCcee-ecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEE
Q 014547 126 SQLRVAYQGVPGAY-SEAAA---GKAYPNCEAI-PCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHI 200 (423)
Q Consensus 126 ~~~~VayLGP~GTf-Sh~AA---~~~f~~~e~v-p~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~I 200 (423)
+..+||+...-+.+ --... .+.+|+.++. -..+-.++.++|.+|++|+|++..... ..+ +
T Consensus 19 g~l~Ig~~~~~~~~~l~~~l~~f~~~~P~i~l~~~~~~~~~~~~~l~~g~~Dl~i~~~~~~-------------~~~--~ 83 (241)
T 3oxn_A 19 QTFTIATTDYAMQTILPFALPRIYQEAPNVSFNFLPLQHDRLSDQLTYEGADLAICRPTGP-------------VEP--L 83 (241)
T ss_dssp CEEEEEECSHHHHHTHHHHHHHHHHHCTTCEEEEEECCGGGHHHHHHTSCCSEEEECCSSC-------------CTT--E
T ss_pred ceEEEEechHHHHHHHHHHHHHHHHHCCCCEEEEEECCcccHHHHHHcCCCCEEEecCCCC-------------Ccc--c
Confidence 46788876432221 11111 1246777653 335567889999999999999853211 111 2
Q ss_pred EEEEEEeeeeeeeecCCC-------CcCcc---cEEEech--hHHHHHHHHHHHcCCcee-EEeccCHHHHHHHHHhcCC
Q 014547 201 VGEVQLPVHHCLLALPGV-------RKEYL---TRVISHP--QALSQCEHTLTKLGLNVA-REAVDDTAGAAEYIAANDL 267 (423)
Q Consensus 201 vgEi~lpI~h~Lla~~g~-------~l~dI---k~VySHP--qAL~QC~~fL~~~~p~~~-~v~~~STA~AA~~va~~~~ 267 (423)
..+......+++++.++- +++++ .-|.-.+ ....+..+++.+. .... ...++|...+.++|+.+
T Consensus 84 ~~~~l~~~~~~~v~~~~hpl~~~~i~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~g-- 160 (241)
T 3oxn_A 84 RSEILGRVGVLCLLSKQHPLANQEMSLDDYLSHPHAMIAISDGVKALIEQALIDK-PQRKMVLRAYHLEAALAIVDTL-- 160 (241)
T ss_dssp EEEEEECCCEEEEEETTSGGGGSCCCHHHHHTSEEEECSCCHHHHHHHHHHSTTS-CCCEEEEECSSTHHHHHHC--C--
T ss_pred eeEEeecccEEEEEeCCCCcccCCCCHHHHhcCCeEEEecCCCccchhHHHHHhh-ccceEEEECCcHHHHHHHHhCC--
Confidence 333344455555554442 22232 2332222 1123344444444 3322 33567777777777765
Q ss_pred CCeeEEccHHHHHH
Q 014547 268 RDTAAIASARAAEL 281 (423)
Q Consensus 268 ~~~AAIaS~~AAel 281 (423)
...||.+...+..
T Consensus 161 -~giailp~~~~~~ 173 (241)
T 3oxn_A 161 -PIIITVPADLAYL 173 (241)
T ss_dssp -CCEEEEEHHHHHH
T ss_pred -CeEEEcHHHHHHH
Confidence 4566777766653
No 112
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=45.85 E-value=36 Score=29.53 Aligned_cols=33 Identities=24% Similarity=0.216 Sum_probs=26.9
Q ss_pred eEEEEE-EeCCCccHHHHHHHHHHhCCceeeeee
Q 014547 318 KTSIVF-AHDKGTSVLFKVLSAFAFRNISLTKIE 350 (423)
Q Consensus 318 KTSivf-~l~~~pGaL~~vL~~Fa~~~INLtkIE 350 (423)
+++++= ...+.||.+.++++.|+++|||+..|-
T Consensus 105 ~vsvvG~~m~~~~Gv~a~i~~aL~~~~InI~~is 138 (167)
T 2re1_A 105 KVSAVGLGMRSHVGVAAKIFRTLAEEGINIQMIS 138 (167)
T ss_dssp EEEEECSSCTTCCCHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEECCCcCCCcCHHHHHHHHHHHCCCcEEEEE
Confidence 455543 356689999999999999999999985
No 113
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=45.85 E-value=23 Score=37.12 Aligned_cols=69 Identities=9% Similarity=0.060 Sum_probs=51.1
Q ss_pred eEEEEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHH
Q 014547 318 KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397 (423)
Q Consensus 318 KTSivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL 397 (423)
+..+.+.++++||+|.++++.+. +-|+++++=|.. .. .+-..+|.+|..-..+.++++++.|
T Consensus 338 ~~~~~v~~p~~pg~l~~~~~~l~--~~~i~~~~~~~~--~~--------------~~~~~~~~~e~~~~~~~~~~~~~~l 399 (514)
T 1tdj_A 338 EALLAVTIPEEKGSFLKFCQLLG--GRSVTEFNYRFA--DA--------------KNACIFVGVRLSRGLEERKEILQML 399 (514)
T ss_dssp EEEEEEECCBSSSCSHHHHHTTS--SSEEEEEEEECC--CS--------------SBCEEEEEEECSSTHHHHHHHHHHH
T ss_pred cccccccCCCCCchHHHHHHHhC--CCceEEEEeecc--CC--------------CeEEEEEEEEeCCcHHHHHHHHHHH
Confidence 56788899999999999999887 689999998832 11 2345567777543257888899999
Q ss_pred HhhcCce
Q 014547 398 QEFTSFL 404 (423)
Q Consensus 398 ~~~~~~v 404 (423)
++..-.+
T Consensus 400 ~~~g~~~ 406 (514)
T 1tdj_A 400 NDGGYSV 406 (514)
T ss_dssp TSSSCEE
T ss_pred HhCCCCe
Confidence 8765443
No 114
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=45.26 E-value=27 Score=33.49 Aligned_cols=49 Identities=22% Similarity=0.027 Sum_probs=38.6
Q ss_pred cEEEEeCCCccHHHHHHhhhCC-------CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYP-------NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~-------~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|+| |..|+-+|.++..++. +...+++.+..+++.++..|++|..+..
T Consensus 147 k~v~~-~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~a~~aL~~G~vDa~~~~ 202 (327)
T 4ddd_A 147 KRVNI-GSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSEQAQALCDNKIDVMVDV 202 (327)
T ss_dssp SEEEC-CSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHHHHHHHHTTSCSBEEEE
T ss_pred CEEec-CCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHHHHHHHHcCCCCEEEEc
Confidence 37876 6789988887765432 2246899999999999999999999874
No 115
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58}
Probab=44.98 E-value=20 Score=31.19 Aligned_cols=33 Identities=24% Similarity=0.253 Sum_probs=27.4
Q ss_pred EEEEEE-eCCCccHHHHHHHHHHhCCceeeeeee
Q 014547 319 TSIVFA-HDKGTSVLFKVLSAFAFRNISLTKIES 351 (423)
Q Consensus 319 TSivf~-l~~~pGaL~~vL~~Fa~~~INLtkIES 351 (423)
+.|.+. ++++||.+.++++.|+++|||+-.|-.
T Consensus 26 ~~i~v~~~~~~~G~~~~if~~La~~~Invd~i~~ 59 (167)
T 2re1_A 26 ARINVRGVPDKPGVAYQILGAVADANIEVDMIIQ 59 (167)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCCCEEE
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHcCCeEEEEEc
Confidence 334333 678999999999999999999999865
No 116
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=44.25 E-value=55 Score=28.75 Aligned_cols=34 Identities=21% Similarity=0.206 Sum_probs=28.2
Q ss_pred eEEEEE-EeCCCccHHHHHHHHHHhCCceeeeeee
Q 014547 318 KTSIVF-AHDKGTSVLFKVLSAFAFRNISLTKIES 351 (423)
Q Consensus 318 KTSivf-~l~~~pGaL~~vL~~Fa~~~INLtkIES 351 (423)
+.|++= ...+.||.+.++++.+++.|||+..|-+
T Consensus 97 ~VsvVG~gm~~~~Gv~arif~aLa~~~InI~~ist 131 (178)
T 2dtj_A 97 KVSLVGAGMKSHPGVTAEFMEALRDVNVNIELIST 131 (178)
T ss_dssp EEEEEEECCTTCHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred EEEEEcCCcccCccHHHHHHHHHHHCCCCEEEEEc
Confidence 556664 3567899999999999999999999853
No 117
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=43.51 E-value=1e+02 Score=30.79 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=42.0
Q ss_pred eEEEEEE-eCCCccHHHHHHHHHHhCCceeeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHH
Q 014547 318 KTSIVFA-HDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAE 396 (423)
Q Consensus 318 KTSivf~-l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~e 396 (423)
-+.|.+. .+++||.+.++++.|+++|||+-.|-- .+.... .| .....|.|+-+ +..+..++|++
T Consensus 264 ~~~i~v~~~~~~~g~~~~If~~La~~~I~vd~I~q-~~s~~~--------~g---~~~isf~v~~~---~~~~a~~~l~~ 328 (421)
T 3ab4_A 264 EAKVTVLGISDKPGEAAKVFRALADAEINIDMVLQ-NVFSVE--------DG---TTDITFTCPRS---DGRRAMEILKK 328 (421)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCEEEEE-CCCC----------CC---EEEEEEEEETT---THHHHHHHHHH
T ss_pred EEEEEEeccCCcccHHHHHHHHHHHcCCcEEEEEc-cCcccc--------CC---cceEEEEEech---hHHHHHHHHHH
Confidence 3344443 678999999999999999999998842 211000 00 02456777642 22455677777
Q ss_pred HHhh
Q 014547 397 VQEF 400 (423)
Q Consensus 397 L~~~ 400 (423)
+++.
T Consensus 329 ~~~~ 332 (421)
T 3ab4_A 329 LQVQ 332 (421)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6543
No 118
>2dt9_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; 2.15A {Thermus thermophilus} PDB: 2zho_A
Probab=43.40 E-value=39 Score=29.27 Aligned_cols=34 Identities=26% Similarity=0.163 Sum_probs=28.3
Q ss_pred CeEEEEE-EeCCCccHHHHHHHHHHhCCceeeeee
Q 014547 317 FKTSIVF-AHDKGTSVLFKVLSAFAFRNISLTKIE 350 (423)
Q Consensus 317 ~KTSivf-~l~~~pGaL~~vL~~Fa~~~INLtkIE 350 (423)
.|+|++= ..++.||.+.++++.+++.|||+..|-
T Consensus 96 a~vsvVG~gm~~~~Gv~a~~f~aL~~~~InI~~is 130 (167)
T 2dt9_A 96 AKVSIVGVGLASTPEVPAKMFQAVASTGANIEMIA 130 (167)
T ss_dssp EEEEEEESSGGGSTHHHHHHHHHHHHTTCCCCEEE
T ss_pred EEEEEECCCcccCcCHHHHHHHHHHHCCCCEEEEE
Confidence 3677775 366789999999999999999997774
No 119
>1zbm_A Hypothetical protein AF1704; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.30A {Archaeoglobus fulgidus} SCOP: c.94.1.1
Probab=43.07 E-value=30 Score=31.41 Aligned_cols=50 Identities=22% Similarity=0.084 Sum_probs=38.3
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEeec
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVE 179 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIE 179 (423)
.|||+. ..||-++...+.++.+.+++.. ++.++..++.+|++|.+++.-+
T Consensus 104 K~Iav~-~~~s~~~~ll~~~l~~~~~~~~-~~~~~~~al~~G~vDa~~~~~~ 153 (280)
T 1zbm_A 104 KRIAVP-GRYTTANLLLKLAVEDFEPVEM-PFDRIIQAVLDEEVDAGLLIHE 153 (280)
T ss_dssp CEEEES-CTTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEECSG
T ss_pred CEEEec-CCCcHHHHHHHHHhccCceEec-CHHHHHHHHHcCCCCEEEEech
Confidence 489987 4577778767666666666654 6789999999999999877543
No 120
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae}
Probab=42.94 E-value=1e+02 Score=26.24 Aligned_cols=116 Identities=8% Similarity=-0.070 Sum_probs=62.3
Q ss_pred CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecC-CCC---cCccc--
Q 014547 151 CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALP-GVR---KEYLT-- 224 (423)
Q Consensus 151 ~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~-g~~---l~dIk-- 224 (423)
.++++. ++.++++++++|++|.++-++--+ .+-...+ . ...-+......|++++ +.. ++|++
T Consensus 49 ~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~~-----~~r~~~~-----~-~s~p~~~~~~~~~~~~~~~~i~~~~dL~g~ 116 (246)
T 4eq9_A 49 VKFEKT-EWSGVFAGLDADRYNMAVNNLSYT-----KERAEKY-----L-YAAPIAQNPNVLVVKKDDSSIKSLDDIGGK 116 (246)
T ss_dssp EEEEEC-CHHHHHHHHHTTSCSEECSSCCCC-----HHHHHHE-----E-ECCCCEECCEEEEEETTCCSCSSGGGCTTC
T ss_pred EEEEeC-CHHHHHHHHhCCCcCEEecccccC-----hhhhhce-----e-eccceecCceEEEEECCCCCCCCHHHhCCC
Confidence 467777 999999999999999875332111 1111111 1 1122233355677666 332 33332
Q ss_pred EEEechh--HHHHHHHHHHHcCC-ceeEEec-cCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 RVISHPQ--ALSQCEHTLTKLGL-NVAREAV-DDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 ~VySHPq--AL~QC~~fL~~~~p-~~~~v~~-~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|....- ......+++..+.. ...++.. .+..++.+++..+ +-.|+|+....+.
T Consensus 117 ~i~~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~g--~vDa~~~~~~~~~ 174 (246)
T 4eq9_A 117 STEVVQATTSAKQLEAYNAEHTDNPTILNYTKADFQQIMVRLSDG--QFDYKIFDKIGVE 174 (246)
T ss_dssp EEEECTTCHHHHHHHHHHHHCTTSCCEEEECCCCHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred EEEEecCccHHHHHHHHHhhCCCcceEEEecCCCHHHHHHHHHcC--CceEEEecHHHHH
Confidence 4433221 12223333334431 2344433 4778899998876 4678887776554
No 121
>2rc8_A Glutamate [NMDA] receptor subunit 3A; membrane protein, cell junction, glycoprotein, ION transport channel, magnesium; 1.45A {Rattus norvegicus} PDB: 2rc7_A 2rc9_A 2rca_A 2rcb_A
Probab=42.50 E-value=26 Score=32.26 Aligned_cols=79 Identities=14% Similarity=0.064 Sum_probs=52.1
Q ss_pred cEEEEeCCCccHHHHHHhhhCCC----CceeecCCHHHHHHHHHc--CCcCeEEEeeccCCCCchHHHHHHhhc----CC
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPN----CEAIPCDQFEVAFQAVEL--WIADRAVLPVENSLGGSIHRNYDLLLR----HR 197 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~----~e~vp~~Sf~~Vf~aV~~--g~~d~gVVPIENS~~G~V~~tlDlL~~----~~ 197 (423)
.+||+ ..|+..+....+.+++ .+.+.+.+.++++++|.+ |++|..+..- .+++.+++ .+
T Consensus 171 ~~vg~--~~gs~~~~~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~GrvDa~i~~~---------~~~~~~~~~~~~~~ 239 (294)
T 2rc8_A 171 FRFGT--VRESSAEDYVRQSFPEMHEYMRRYNVPATPDGVQYLKNDPEKLDAFIMDK---------ALLDYEVSIDADCK 239 (294)
T ss_dssp CCEEC--BTTSHHHHHHHHHCHHHHHHHGGGCBSSHHHHHHHHHSSSCCCSEEEEEH---------HHHHHHHHTCSSSC
T ss_pred eEEEE--EcCChHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhccCceeEEEecH---------HHHHHHHhhCCCCC
Confidence 47777 4678777766665543 233468899999999999 9999887752 23333322 24
Q ss_pred cEEEEEEEEeeeeeeeecCC
Q 014547 198 LHIVGEVQLPVHHCLLALPG 217 (423)
Q Consensus 198 L~IvgEi~lpI~h~Lla~~g 217 (423)
+.++++..-...+.++.+++
T Consensus 240 l~~~~~~~~~~~~~ia~~k~ 259 (294)
T 2rc8_A 240 LLTVGKPFAIEGYGIGLPPN 259 (294)
T ss_dssp EEECSCCEEEEEECCEECTT
T ss_pred EEEcCCcccccceEEEecCC
Confidence 77777655455566666654
No 122
>4ddd_A Immunogenic protein; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, immune system; 1.90A {Ehrlichia chaffeensis}
Probab=41.59 E-value=2.3e+02 Score=26.77 Aligned_cols=134 Identities=10% Similarity=0.088 Sum_probs=77.9
Q ss_pred ccEEEEeCCCccHHHHH---Hh---hh-C--CC--CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHH---
Q 014547 127 QLRVAYQGVPGAYSEAA---AG---KA-Y--PN--CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDL--- 192 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~A---A~---~~-f--~~--~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDl--- 192 (423)
.++|+.-+|-|+|--.+ |. +. + .+ +++.+...-.+.+.+|.+|++|++++... .+...+.-
T Consensus 33 ~i~i~~g~~gG~~~~~~~~la~~l~~~~~~~~g~~v~v~~~~g~~~~i~~l~~g~~D~~~~~~~-----~~~~a~~g~~~ 107 (327)
T 4ddd_A 33 YILIGTGSMTGVYYPIGGSICRFIASDYGKDNKIICSISSTTGSVYNLNSIRYSNMDISIVQSD-----LEYYAYNGLGF 107 (327)
T ss_dssp EEEEECCCTTSSHHHHHHHHHHHHHHHHGGGTSEEEEEECCCCHHHHHHHHHTTSCSEEEEEHH-----HHHHHHHTCGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhccCCCCCeEEEEEecCcHHHHHHHHHcCCCcEEEECcH-----HHHHHHhCcCc
Confidence 46777777777773322 11 12 1 22 45566677889999999999999988642 11111110
Q ss_pred h----hcCCcEEEEEEEEeeeeeeeecCCCC---cCccc--EEEe-chh--HHHHHHHHHHHcCCce---eEEeccCHHH
Q 014547 193 L----LRHRLHIVGEVQLPVHHCLLALPGVR---KEYLT--RVIS-HPQ--ALSQCEHTLTKLGLNV---AREAVDDTAG 257 (423)
Q Consensus 193 L----~~~~L~IvgEi~lpI~h~Lla~~g~~---l~dIk--~VyS-HPq--AL~QC~~fL~~~~p~~---~~v~~~STA~ 257 (423)
+ ...++..++-+.- -...|+++++.. ++|++ +|.- .+- .....+.++++.+.+. ..+...+.++
T Consensus 108 f~~~~~~~d~~~v~~~~~-~~~~lvv~~ds~i~sl~DL~gk~v~~~~~Gs~~~~~~~~~l~~~Gi~~~~v~~v~~~g~~~ 186 (327)
T 4ddd_A 108 YEKMLPMDNLRMLASLHK-EYLTIVVKKSSNISVIDDIKGKRVNIGSPGTGVRVAMLKLLGEKGWTKKDFSVMAELKSSE 186 (327)
T ss_dssp GTTSCCCTTEEEEEEEEE-EEEEEEEETTSSCCSGGGGTTSEEECCSTTSHHHHHHHHHHHHHTCCGGGCSEEECCCHHH
T ss_pred ccccCCCcchhehhccCC-ccEEEEEECCCCCCCHHHhCCCEEecCCCCccHHHHHHHHHHHcCCChHhcchhhcCCHHH
Confidence 1 1135777775543 456677776543 34432 4432 221 1234566777765433 3566778888
Q ss_pred HHHHHHhcC
Q 014547 258 AAEYIAAND 266 (423)
Q Consensus 258 AA~~va~~~ 266 (423)
+...+..++
T Consensus 187 a~~aL~~G~ 195 (327)
T 4ddd_A 187 QAQALCDNK 195 (327)
T ss_dssp HHHHHHTTS
T ss_pred HHHHHHcCC
Confidence 888888763
No 123
>4gvo_A LMO2349 protein; structural genomics, IDP05245, L-cystine, ABC transporter, periplasmic binding protein, niaid; HET: HIS; 1.45A {Listeria monocytogenes} PDB: 2o1m_A
Probab=41.41 E-value=1.4e+02 Score=26.13 Aligned_cols=79 Identities=15% Similarity=0.035 Sum_probs=49.7
Q ss_pred cEEEEeCCCccHHHHHHhhh---CC-CCc-eeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-c--CCcE
Q 014547 128 LRVAYQGVPGAYSEAAAGKA---YP-NCE-AIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-R--HRLH 199 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~---f~-~~e-~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~--~~L~ 199 (423)
.+|+.+ .|+..+....++ .+ ..+ .....+.++++++|..|++|..+.. ..+++.+. + ..+.
T Consensus 119 ~~v~v~--~gs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~GrvDa~i~~---------~~~~~~~~~~~~~~~~ 187 (243)
T 4gvo_A 119 KRVITS--ATSNGALVLKKINEEQGNNFEIAYEGQGSNDTANQLKTGRADATIST---------PFAVDFQNKTSAIKEK 187 (243)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHHTTSCSEEEECCSGGGSHHHHHHHTSCSBEEEC---------HHHHHHHHHTCSSCEE
T ss_pred CeEEEe--cCchHHHHHHHHHHhccccceeccccCChHHHHHHHHcCCccEEEcc---------HHHHHHHHhhCCCceE
Confidence 488876 566666555433 22 233 3467889999999999999965431 12233333 2 2467
Q ss_pred EEEEEEEeeeeeeeecCC
Q 014547 200 IVGEVQLPVHHCLLALPG 217 (423)
Q Consensus 200 IvgEi~lpI~h~Lla~~g 217 (423)
++++..-+...+++.+++
T Consensus 188 ~~~~~~~~~~~~~~~~k~ 205 (243)
T 4gvo_A 188 VVGDVLSNAKVYFMLGKD 205 (243)
T ss_dssp EEEEEEECCEECCEECTT
T ss_pred EeccCCCCCcEEEEEeCC
Confidence 888877776677766653
No 124
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A
Probab=40.54 E-value=91 Score=28.20 Aligned_cols=114 Identities=11% Similarity=-0.027 Sum_probs=64.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC---CcCccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV---RKEYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~---~l~dIk-- 224 (423)
+.++++.+ +.+++++|++|++|+++..+.- ...+....+. ... -+......|+++++. +++|++
T Consensus 97 ~v~~~~~~-~~~~~~~l~~G~~D~~~~~~~~----~t~~r~~~~~-----~~~-p~~~~~~~l~~~~~~~i~s~~dL~G~ 165 (283)
T 2yln_A 97 KVEFKETQ-WDSMMAGLKAGRFDVVANQVGL----TSPERQATFD-----KSE-PYSWSGAVLVAHNDSNIKSIADIKGV 165 (283)
T ss_dssp EEEEEECC-GGGHHHHHHHTSCSEECSSCCC----CSHHHHHHEE-----ECS-CSEEECEEEEEETTCSCCSGGGCTTS
T ss_pred ceEEEECC-HHHHHHHHHCCCcCEEEecCcc----CChhhhcceE-----ecc-CeeeecEEEEEECCCCCCCHHHhCCC
Confidence 46778877 8999999999999998643221 0111111111 111 112234566666653 334442
Q ss_pred EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 ~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|..-. .-. -..+|++. +++++.+.+..++.+.+..+ +-.|+|.....+.
T Consensus 166 ~v~v~~-g~~-~~~~l~~~--~~~~~~~~~~~~~~~~l~~g--~vDa~i~~~~~~~ 215 (283)
T 2yln_A 166 KTAQSL-TSN-YGEKAKAA--GAQLVPVDGLAQSLTLIEQK--RADATLNDELAVL 215 (283)
T ss_dssp EEEECT-TSH-HHHHHHHT--TCEEEECSSHHHHHHHHHTT--SCCEEEEEHHHHH
T ss_pred EEEEec-Cch-HHHHHHHc--CCeEEEeCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 454322 211 23466665 35677788888899988876 3567777765544
No 125
>3tmg_A Glycine betaine, L-proline ABC transporter, glycine/betaine/L-proline-binding protein...; ssgcid, structural genomics; 1.90A {Borrelia burgdorferi}
Probab=39.95 E-value=2.4e+02 Score=26.34 Aligned_cols=134 Identities=14% Similarity=0.108 Sum_probs=77.9
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCCc---Cccc--
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRK---EYLT-- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~l---~dIk-- 224 (423)
+++..+.. -..+++++.+|++|+.+--.-+.+.. ..++.. +.++...+...-.-.+.|++++...+ +|++
T Consensus 45 ~Ve~~~~~-~~~~~~AL~~G~iD~~~e~w~~~~~~---~~~~~~-~~~l~~l~~~~~~~~~~l~V~~~~~i~sisDL~~~ 119 (280)
T 3tmg_A 45 NAEIFSVT-TSIMYQYLASGKIDGTVSSWVPTADK---FYYEKL-KTKFVDLGANYEGTIQGFVVPSYVPISSISELKGK 119 (280)
T ss_dssp EEEEEECC-HHHHHHHHHTTSSSEEEEEEETTTTH---HHHHHH-GGGEEEEEEEEEEEEEEEEEETTSCCCBGGGGTTC
T ss_pred ceEEEECC-cHHHHHHHHCCCCcEEEeccCCcccH---HHHHHh-cCcEEEccccCCCceEEEEECCCCCCCCHHHHHhh
Confidence 45677764 57899999999999976544443322 334433 34788888777666688998876543 4443
Q ss_pred ------EEEechhHHH---HHHHHHHHcCC-c-eeEEeccCHHH---HHHHHHhcCCCCeeEE-ccHHHHHHcCCceeec
Q 014547 225 ------RVISHPQALS---QCEHTLTKLGL-N-VAREAVDDTAG---AAEYIAANDLRDTAAI-ASARAAELYGMQVLED 289 (423)
Q Consensus 225 ------~VySHPqAL~---QC~~fL~~~~p-~-~~~v~~~STA~---AA~~va~~~~~~~AAI-aS~~AAelYgL~ILa~ 289 (423)
+++.=|.... .....|+..+. + .+.+. .|.+. +.+...+++......+ .+.-.-..|+|.+|++
T Consensus 120 ~~~f~~~~~g~~~G~~~~~~~~~~l~~yGL~~~~~~v~-~s~~~m~~~l~~A~~~g~~~v~~~w~p~~~~~~~~l~~LeD 198 (280)
T 3tmg_A 120 GDKFKNKMIGIDAGAGTQIVTEQALNYYGLSKEYELVP-SSESVMLASLDSSIKRNEWILVPLWKPHWAFSRYDIKFLDD 198 (280)
T ss_dssp GGGGTTEEECCSTTCHHHHHHHHHHHHTTCTTTSEEEC-CCHHHHHHHHHHHHHTTCCCCEEEEESCTHHHHSCEEECBC
T ss_pred HHHcCCeEEecCCCchhHHHHHHHHHhcCCCCceEEEe-CCHHHHHHHHHHHHHCCCCEEEEEecCchhhhcCCeEEecC
Confidence 3455444322 22445666655 2 55553 33321 2222233334444444 5555566789999885
No 126
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=39.94 E-value=2.1e+02 Score=25.81 Aligned_cols=52 Identities=13% Similarity=-0.025 Sum_probs=33.4
Q ss_pred ccEEEEeCCCccH-HHHHH---hhhCCCCceee-cCCHHHHHHHHHcCCcCeEEEee
Q 014547 127 QLRVAYQGVPGAY-SEAAA---GKAYPNCEAIP-CDQFEVAFQAVELWIADRAVLPV 178 (423)
Q Consensus 127 ~~~VayLGP~GTf-Sh~AA---~~~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPI 178 (423)
..+|++...-+.+ --... .+.+|+.++.. ..+..++.+.|.+|++|+|++..
T Consensus 91 ~l~Ig~~~~~~~~~l~~~l~~f~~~~P~v~i~l~~~~~~~~~~~l~~g~~Dlai~~~ 147 (312)
T 2h9b_A 91 TIRIGFVGSLLFGLLPRIIHLYRQAHPNLRIELYEMGTKAQTEALKEGRIDAGFGRL 147 (312)
T ss_dssp EEEEEECGGGGGTTHHHHHHHHHHTCTTCEEEEEECCHHHHHHHHHTTSCSEEEESS
T ss_pred eEEEEechhhhHhhHHHHHHHHHHHCCCcEEEEEeCCHHHHHHHHHcCCCCEEEEeC
Confidence 5677776544321 11111 23468776543 34678999999999999999854
No 127
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=39.60 E-value=73 Score=27.24 Aligned_cols=115 Identities=17% Similarity=0.112 Sum_probs=65.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCC----cCccc-
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVR----KEYLT- 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~----l~dIk- 224 (423)
+.++++. ++.++++++++|++|+++-.+--+ .+-.+.+. .. +-+......|+++++.. ++|++
T Consensus 44 ~~~~~~~-~~~~~~~~l~~g~~D~~~~~~~~t-----~~r~~~~~-----~s-~p~~~~~~~l~~~~~~~~~~~~~dL~g 111 (239)
T 1lst_A 44 KCTWVAS-DFDALIPSLKAKKIDAIISSLSIT-----DKRQQEIA-----FS-DKLYAADSRLIAAKGSPIQPTLESLKG 111 (239)
T ss_dssp EEEEEEC-CGGGHHHHHHTTSCSEECSSCBCC-----HHHHHHCE-----EC-SCSBCCCEEEEEETTCCCCSSHHHHTT
T ss_pred eEEEEeC-CHHHHHHHHhCCCCCEEEECcCcC-----HHHhhcee-----ec-ccceeCceEEEEeCCCCCCCCHHHhCC
Confidence 4567776 889999999999999875322111 11111111 11 11223445666665542 23332
Q ss_pred -EEEechhHHHHHHHHHHHcC--CceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 225 -RVISHPQALSQCEHTLTKLG--LNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 225 -~VySHPqAL~QC~~fL~~~~--p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+|... .... ...+|.+.. +++.++.+.+..++.+++..+ +-.|+|.....+.
T Consensus 112 ~~v~~~-~g~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~G--~vDa~~~~~~~~~ 166 (239)
T 1lst_A 112 KHVGVL-QGST-QEAYANDNWRTKGVDVVAYANQDLIYSDLTAG--RLDAALQDEVAAS 166 (239)
T ss_dssp CEEEEE-TTSH-HHHHHHHHTGGGTCEEEEESSHHHHHHHHHTT--SCSEEEEEHHHHH
T ss_pred CEEEEE-cCcc-HHHHHHHhcccCCCeEEEcCCHHHHHHHHHcC--CCCEEEeCcHHHH
Confidence 34332 2222 234455443 356778888999999999876 4678888776654
No 128
>3n5l_A Binding protein component of ABC phosphonate TRAN; structural genomics, joint center for structural genomics; HET: UNL; 1.97A {Pseudomonas aeruginosa}
Probab=39.11 E-value=2.2e+02 Score=26.64 Aligned_cols=144 Identities=13% Similarity=0.039 Sum_probs=75.8
Q ss_pred ccEEEEeCCCccHHHHHH----hhh----CC-CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCC
Q 014547 127 QLRVAYQGVPGAYSEAAA----GKA----YP-NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHR 197 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA----~~~----f~-~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~ 197 (423)
..+||++.-...+.-... .++ .+ ++++++..++.++++++..|++|+++.. ... ......+.+
T Consensus 5 ~l~iG~~p~~~p~~~~~~~~~l~~~l~k~lG~~ve~~~~~~~~~~i~al~~G~vDi~~~~-------~~~-~~~~~~~~~ 76 (310)
T 3n5l_A 5 VINFGIISTESSQNLKSIWEPFLKDMSQQTGYQVKAFFAPDYAGIIQGMRFDKVDIAWYG-------NKA-AMEAVDRAH 76 (310)
T ss_dssp EEEEEECCSSCHHHHHHHHHHHHHHHHHHHSSEEEEECCSSHHHHHHHHHTTSCSEEECC-------HHH-HHHHHHHSC
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHcCCCCEEEEC-------cHH-HHHHHHhcC
Confidence 578899876665543221 111 12 4667788999999999999999999653 111 112222344
Q ss_pred cEEEEEEE----Ee-eeeeeeecCCC---CcCcc----c--EEE-echhHH--HHH-HHHH-HHcCCc----eeEEeccC
Q 014547 198 LHIVGEVQ----LP-VHHCLLALPGV---RKEYL----T--RVI-SHPQAL--SQC-EHTL-TKLGLN----VAREAVDD 254 (423)
Q Consensus 198 L~IvgEi~----lp-I~h~Lla~~g~---~l~dI----k--~Vy-SHPqAL--~QC-~~fL-~~~~p~----~~~v~~~S 254 (423)
+.++.... .| ....|+++++. +++|+ + +|- ..+-.- ... +.+| ++.+.+ ...++..+
T Consensus 77 ~~~~a~~~~~~g~~~~~~~lvv~~ds~i~sl~DL~~~~kgk~ia~~~~gs~~~~l~~~~~l~~~~Gi~~~~~~~~v~~g~ 156 (310)
T 3n5l_A 77 GEIFAQTVAASGAPGYWSLLIANKDSKIDSLEDMLANAKSLTFGNGDPNSTSGYLVPGYYVFAKNNVDPVKAFKRTLNSS 156 (310)
T ss_dssp EEEEEEEEETTCCSEEEEEEEEETTCSCCSHHHHHHTGGGCEEEECCTTCTTTTHHHHHHTTTTTTCCHHHHSSEEEECC
T ss_pred CeEEEEEeccCCCcceEEEEEEECCCCCCCHHHHhhhcCCCEEEecCCCccHhHHHHHHHHHHHcCCChHHhccccccCC
Confidence 44443221 11 12357777664 33454 2 343 233211 111 2222 444433 34455556
Q ss_pred HHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 255 TAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 255 TA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
...+...+..+ .-.|++.....+.
T Consensus 157 ~~~~~~al~~G--~vDa~~~~~~~~~ 180 (310)
T 3n5l_A 157 HEVNALAVANK--QVDVATFNTEGME 180 (310)
T ss_dssp HHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred HHHHHHHHHcC--CccEEEecchhHH
Confidence 56777777765 3456665554443
No 129
>3hn0_A Nitrate transport protein; ABC transporter, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; 1.75A {Parabacteroides distasonis}
Probab=38.33 E-value=28 Score=32.47 Aligned_cols=49 Identities=14% Similarity=-0.045 Sum_probs=37.6
Q ss_pred cEEEEeCCCccHHHHHHhhhC---C-CCceeecC-CHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY---P-NCEAIPCD-QFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f---~-~~e~vp~~-Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.|||+-| +||-+|...+.++ + ++++++.. ++.++..++.+|++|.++++
T Consensus 97 K~Iav~~-~gs~~~~ll~~~L~~~Gldv~~~~~~~~~~~~~~al~~G~vDa~~~~ 150 (283)
T 3hn0_A 97 PALYVFG-NGTTPDILTRYYLGRQRLDYPLNYAFNTAGEITQGILAGKVNRAVLG 150 (283)
T ss_dssp CCEECSS-TTSHHHHHHHHHHHHHTCCCCEECSCCSHHHHHHHHHHTSCSEEEEC
T ss_pred CEEEecC-CCCcHHHHHHHHHHHcCCceEEEEccCCHHHHHHHHHcCCCCEEEec
Confidence 3788753 6777776654432 2 57788777 89999999999999999986
No 130
>2dtj_A Aspartokinase; protein-ligand complex, regulatory subunit, transferase; HET: CIT; 1.58A {Corynebacterium glutamicum} PDB: 3aaw_B* 3ab2_B 3ab4_B*
Probab=37.56 E-value=36 Score=30.02 Aligned_cols=27 Identities=19% Similarity=0.133 Sum_probs=24.2
Q ss_pred eCCCccHHHHHHHHHHhCCceeeeeee
Q 014547 325 HDKGTSVLFKVLSAFAFRNISLTKIES 351 (423)
Q Consensus 325 l~~~pGaL~~vL~~Fa~~~INLtkIES 351 (423)
++++||.+.++++.|+++|||+-.|-.
T Consensus 23 ~~~~~G~~a~if~~La~~~InId~i~~ 49 (178)
T 2dtj_A 23 ISDKPGEAAKVFRALADAEINIDMVLQ 49 (178)
T ss_dssp EECSTTHHHHHHHHHHHTTCCCCEEEE
T ss_pred CCCCccHHHHHHHHHHHcCCCEEEEEc
Confidence 578999999999999999999988754
No 131
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=34.46 E-value=2.5e+02 Score=25.03 Aligned_cols=120 Identities=15% Similarity=0.045 Sum_probs=61.4
Q ss_pred hCCCCceeecC-CHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC-------
Q 014547 147 AYPNCEAIPCD-QFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV------- 218 (423)
Q Consensus 147 ~f~~~e~vp~~-Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~------- 218 (423)
.+|+.++.... +-+++.+.+.+|++|+|++... .+.. ...+ +..+.......++++.++-
T Consensus 126 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~~---~~~~-------~~~~--l~~~~l~~~~~~~v~~~~~pl~~~~i 193 (310)
T 2esn_A 126 SAPGVRLRLVNAERKLSVEALASGRIDFALGYDE---EHER-------LPEG--IQAHDWFADRYVVVARRDHPRLAGAP 193 (310)
T ss_dssp HSTTCEEEEECCSSSCCHHHHHHTSSSEEEECCS---TTCC-------CCTT--EEEEEEEEECEEEEEESSCTTCSSSC
T ss_pred HCCCeEEEEEeCCcccHHHHHHcCCCCEEEecCc---cccc-------CCcC--cceeeeeccceEEEEeCCCCCcCCCC
Confidence 36776654333 3356788899999999998621 0110 0111 2222233334455544432
Q ss_pred CcCcc---cEEEechh-H-HHHHHHHHHHcCCce-eEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHH
Q 014547 219 RKEYL---TRVISHPQ-A-LSQCEHTLTKLGLNV-AREAVDDTAGAAEYIAANDLRDTAAIASARAAEL 281 (423)
Q Consensus 219 ~l~dI---k~VySHPq-A-L~QC~~fL~~~~p~~-~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAel 281 (423)
+++|+ .-|.-.+. . -.....|+.+.+... ....++|...+.+.|..+ ...||.+...++.
T Consensus 194 ~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~Gia~lp~~~~~~ 259 (310)
T 2esn_A 194 TLEGYLAERHAVVTPWNEDSGVIDRLLARSGLRREVAVQLPTVLAALFLAGST---DFLLTAPRHAARA 259 (310)
T ss_dssp CHHHHHTSEEEEECTTCCSSCHHHHHHHHTTCCCEEEEEESCHHHHHHHHHTS---SCEEEEEHHHHHH
T ss_pred CHHHHhcCCcEEEeCCCCcccHHHHHHHhCCCCeeEEEeCCCHHHHHHHHhcC---CeEEEcHHHHHHH
Confidence 22332 23433221 1 134566777654222 234567777777777764 4566767666543
No 132
>2y7p_A LYSR-type regulatory protein; transcription regulator, DNA-binding, transcription, transcr factor, transcription regulation; HET: SAL PEU; 1.85A {Burkholderia SP} PDB: 2y7k_A* 2y84_A 2y7w_A 2y7r_A
Probab=33.05 E-value=63 Score=27.72 Aligned_cols=121 Identities=17% Similarity=0.077 Sum_probs=59.2
Q ss_pred hCCCCceee-cCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCCCcCccc-
Q 014547 147 AYPNCEAIP-CDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLT- 224 (423)
Q Consensus 147 ~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~~l~dIk- 224 (423)
.+|++++.. ..+..++.++|.+|++|+|++.......+. ....|.+..+. +.+|-.|-|.. +..+++++.
T Consensus 33 ~~P~v~l~l~~~~~~~l~~~L~~g~iDl~i~~~~~~~~~l---~~~~l~~~~~~----~v~~~~hpla~-~~i~l~dL~~ 104 (218)
T 2y7p_A 33 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQTGF---FQRRLFRHRYV----CMFRKDHPSAK-SPMSLKQFTE 104 (218)
T ss_dssp HCTTCEEEEECCCTTTHHHHHHHTSSCEEEECCTTCCTTE---EEEEEEEECEE----EEEETTCSSCC-SSCCHHHHHH
T ss_pred HCCCCEEEEEeCCcccHHHHHhCCCceEEEecCCCCCcce---eEEEeeeccEE----EEEcCCCCCCC-CCCCHHHHhh
Confidence 468876543 345578999999999999997432111110 00011111111 11233343432 223444442
Q ss_pred --EEEe-ch-hHHHHHHHHHHHcC--CceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHH
Q 014547 225 --RVIS-HP-QALSQCEHTLTKLG--LNVAREAVDDTAGAAEYIAANDLRDTAAIASARAA 279 (423)
Q Consensus 225 --~VyS-HP-qAL~QC~~fL~~~~--p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AA 279 (423)
-|.. .+ ....+..+++.+.+ +++ ...++|...+.++|+.+ ...||.+..++
T Consensus 105 ~~~i~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~lv~~g---~Giailp~~~~ 161 (218)
T 2y7p_A 105 LEHVGVVALNTGHGEVDGLLERAGIKRRM-RLVVPHFIAIGPILHST---DLIATVPQRFA 161 (218)
T ss_dssp SEEEEECCTTSGGGGHHHHHHHTTCCCEE-EEEESSSTTHHHHHHTS---SCBEEEEHHHH
T ss_pred CCCEEeecCCCccCHHHHHHHhcCCcceE-EEEcCcHHHHHHHHhCC---CEEEEcHHHHH
Confidence 2322 11 12233555666554 332 34456666677777765 34566666544
No 133
>3uif_A Sulfonate ABC transporter, periplasmic sulfonate- protein SSUA; structural genomics; 2.60A {Methylobacillus flagellatus}
Probab=32.05 E-value=36 Score=32.21 Aligned_cols=47 Identities=15% Similarity=0.019 Sum_probs=35.5
Q ss_pred cEEEEeCCCccHHHHHHhhhC---C----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY---P----NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f---~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++ +.||-++....+++ + +.++++. ++.+++.++.+|++|.++++
T Consensus 120 k~I~v--~~gs~~~~~~~~~l~~~Gl~~~~v~~v~~-~~~~~~~al~~G~vDa~~~~ 173 (348)
T 3uif_A 120 KKIAL--HRGRPWELAFSNLLQSEGLTFKDFKIVNV-NPQVGAAALASGTVDGFFSL 173 (348)
T ss_dssp SEEEE--CTTSTHHHHHHHHHHHTTCCGGGSEEECC-CHHHHHHHHHHTSSSEEEES
T ss_pred CEEEe--cCCChHHHHHHHHHHHcCCCHHHeEEEEC-CHHHHHHHHHcCCCCEEEec
Confidence 48988 47888887766543 2 2556655 68899999999999998775
No 134
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=31.53 E-value=51 Score=26.78 Aligned_cols=32 Identities=25% Similarity=0.347 Sum_probs=27.6
Q ss_pred EEEEEEecCcChHHHHHHHHHHHhhcCceEEEcc
Q 014547 376 MFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGS 409 (423)
Q Consensus 376 ~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLGs 409 (423)
.++|++.| ++.+++++++-|++....+.++|-
T Consensus 66 ~L~v~l~G--~~~~~~~ai~~L~~~~v~vEvl~~ 97 (106)
T 3dhx_A 66 IMLTEMHG--TQQDTQAAIAWLQEHHVKVEVLGY 97 (106)
T ss_dssp EEEEEEES--CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred EEEEEEeC--CHHHHHHHHHHHHHCCCEEEEeee
Confidence 57789998 457899999999999999999984
No 135
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A
Probab=29.37 E-value=1.7e+02 Score=26.78 Aligned_cols=77 Identities=18% Similarity=0.149 Sum_probs=49.9
Q ss_pred cEEEEeCC----CccHHHHHHhhh--CC--CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcE
Q 014547 128 LRVAYQGV----PGAYSEAAAGKA--YP--NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLH 199 (423)
Q Consensus 128 ~~VayLGP----~GTfSh~AA~~~--f~--~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~ 199 (423)
.||++-=| .|.|..++..+. +. ...++...+..+++..|+.|++|+|++... |.+...++.
T Consensus 133 ~~iai~dP~~~p~G~~a~~~l~~~g~~~~l~~~~v~~~~~~~~~~~v~~Gead~giv~~s-----------~a~~~~~v~ 201 (253)
T 3gzg_A 133 GRLAVGQTASVPAGSYAAAALRKLGQWDSVSNRLAESESVRAALMLVSRGEAPLGIVYGS-----------DARADAKVR 201 (253)
T ss_dssp CCEEEECTTTSHHHHHHHHHHHHTTCHHHHTTSEEEESSHHHHHHHHHTTSSSEEEEEHH-----------HHHHCTTEE
T ss_pred CEEEEeCCCCCchHHHHHHHHHHcCcHHHHhhceeecCCHHHHHHHHHcCCCCEEEEEhh-----------ccccCCCce
Confidence 47888765 677776665442 11 224677899999999999999999999632 333345666
Q ss_pred EEEEE----EEeeeeeeeec
Q 014547 200 IVGEV----QLPVHHCLLAL 215 (423)
Q Consensus 200 IvgEi----~lpI~h~Lla~ 215 (423)
++.++ ..||.+.+...
T Consensus 202 ~v~~~P~~~~~~i~~~~ai~ 221 (253)
T 3gzg_A 202 VVATFPDDSHDAIVYPVAAL 221 (253)
T ss_dssp EEEECCGGGSCCEEEEEEEC
T ss_pred EEEECCcccCceeEEEEEEE
Confidence 66542 23455544443
No 136
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=29.25 E-value=3.8e+02 Score=25.56 Aligned_cols=175 Identities=10% Similarity=-0.068 Sum_probs=104.0
Q ss_pred CccEEEEeCCCccHHHHHHhhhC--------CCCc--eeec---CCHHHHHHHHHc------CCcCeEEEe---------
Q 014547 126 SQLRVAYQGVPGAYSEAAAGKAY--------PNCE--AIPC---DQFEVAFQAVEL------WIADRAVLP--------- 177 (423)
Q Consensus 126 ~~~~VayLGP~GTfSh~AA~~~f--------~~~e--~vp~---~Sf~~Vf~aV~~------g~~d~gVVP--------- 177 (423)
..+|++..-|+|+..+.++.++- +..+ +.|- -+-.+++++|.. |.+|.+++.
T Consensus 10 ~~lk~a~~~~~~~~~~~~~~~fa~~v~e~s~G~i~i~v~p~g~Lg~~~e~~~~v~~~~~~~~G~id~~~~~~~~~~~~~P 89 (328)
T 3u65_B 10 VVLKIASIAPARSIWETELKKLSAEWSEITGGLVSMKFYDMSSLGGEREGIRKLKSSRPGQAAPLDGAVFSCLGLSELAP 89 (328)
T ss_dssp EEEEEEECSCTTSHHHHHHHHHHHHHHHHTTTCEEEEEEEHHHHTCHHHHHHHTSCSSTTSCCSCSEEEECHHHHHHHST
T ss_pred eEEEEeccCCCCCHHHHHHHHHHHHHHHHcCCeEEEEEecCCCcCCHHHHHHHHhhhccCCCCceeEEEeccHhhhhhCC
Confidence 36899999999999888886542 2233 3332 246899999999 999999874
Q ss_pred e--ccCCCC-----c---hHHH--------HHHhhcCCcEEEEEEEEeeeeeeeecC-CCCcCccc--EEEechhHHHHH
Q 014547 178 V--ENSLGG-----S---IHRN--------YDLLLRHRLHIVGEVQLPVHHCLLALP-GVRKEYLT--RVISHPQALSQC 236 (423)
Q Consensus 178 I--ENS~~G-----~---V~~t--------lDlL~~~~L~IvgEi~lpI~h~Lla~~-g~~l~dIk--~VySHPqAL~QC 236 (423)
. =+...- . .... .+.+.+.++++.+-......+. ..++ =.+++|++ +|...+..-.--
T Consensus 90 ~~~~~v~~lPflf~~~~~~~~~~~~~~~~l~~~~~~~g~~~L~~~~~G~r~~-~s~kpI~s~~DlkGlKiR~~~~~s~~~ 168 (328)
T 3u65_B 90 DSGIYTLSVPFLIQNEKDLERVLHELREDLDRPFRAAGFRVITWTNAGWLSF-YTRAPYASLGQLKKQTIALSSLDSSVL 168 (328)
T ss_dssp TCCBGGGGSTTTSCSHHHHHHHHHHTHHHHHHHHHHTTEEEEEEEEEEEEEE-EESSCCSSHHHHHHSEEEECSTTHHHH
T ss_pred hhhhhheeCCeecCCHHHHHHHHHHHHHHHHHHHHHCCeEEEEeecCCceEE-EeCCCCCCHHHHCCCEEEECCCCChHH
Confidence 3 111100 0 1111 1223346888888666655543 3432 23456665 566622211223
Q ss_pred HHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCccCCCCCeeEEEEEee
Q 014547 237 EHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRFVMLAR 306 (423)
Q Consensus 237 ~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nIqD~~~N~TRFlVLsr 306 (423)
.++++..+......+....-.|.+. + --.++..+.....-+++.=+.+.+....+.++-+.++-.
T Consensus 169 ~~~~~alGa~pv~m~~~Evy~ALq~---G--vvDg~e~~~~~~~~~~~~Ev~ky~~~~~h~~~~~~~~~n 233 (328)
T 3u65_B 169 GTCFRICGFDIKDAPNARLAPLLKA---G--SIDGFLSVHLFTWATGFYRYISYALDTKICPAVIGMLIS 233 (328)
T ss_dssp HHHHHHHTCEEEECTTCCHHHHHHH---T--SCCEEEECHHHHHHSCGGGGCCEEECSCCEEEEEEEEEE
T ss_pred HHHHHHCCCeeeecCHHHHHHHHHc---C--ccceEecCHHHHHHcchhhcCcEEEEcCccccceEEEEc
Confidence 5567777766566666666555543 2 346777777777777887777777665555554444433
No 137
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A
Probab=29.05 E-value=71 Score=28.66 Aligned_cols=50 Identities=22% Similarity=0.158 Sum_probs=37.1
Q ss_pred cEEEEeCC----CccHHHHHHhhhCC-----CCceeecCCHHHHHHHHHcCCcCeEEEee
Q 014547 128 LRVAYQGV----PGAYSEAAAGKAYP-----NCEAIPCDQFEVAFQAVELWIADRAVLPV 178 (423)
Q Consensus 128 ~~VayLGP----~GTfSh~AA~~~f~-----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPI 178 (423)
.||++--| .|.|..++-.+. + ...++...+..+++..|++|++|.|++..
T Consensus 117 ~~iai~~p~~~p~G~~a~~~l~~~-g~~~~l~~~~~~~~~~~~~~~~v~~Ge~d~gi~~~ 175 (237)
T 3r26_A 117 GRLAVGDPEHVPAGIYAKEALQKL-GAWDTLSPKLAPAEDVRGALALVERNEAPLGIVYG 175 (237)
T ss_dssp CCEEEECTTTCHHHHHHHHHHHHT-TCHHHHGGGEEEESSHHHHHHHHHTTSSSEEEEEH
T ss_pred CeEEEeCCCCCChHHHHHHHHHHc-CCHHHhhhcEEecCCHHHHHHHHHcCCCCEEEEEe
Confidence 47888766 577766655432 2 12457778999999999999999999963
No 138
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=28.80 E-value=61 Score=29.04 Aligned_cols=53 Identities=17% Similarity=0.073 Sum_probs=33.4
Q ss_pred CccEEEEeCCCccHH-HHHHh---hhCCCCceee-cCCHHHHHHHHHcCCcCeEEEee
Q 014547 126 SQLRVAYQGVPGAYS-EAAAG---KAYPNCEAIP-CDQFEVAFQAVELWIADRAVLPV 178 (423)
Q Consensus 126 ~~~~VayLGP~GTfS-h~AA~---~~f~~~e~vp-~~Sf~~Vf~aV~~g~~d~gVVPI 178 (423)
+..+|+....-+.+- -.... +.+|+.++.. ..+-.++++.+.+|++|+|++.-
T Consensus 95 g~l~i~~~~~~~~~~l~~~l~~f~~~~P~i~i~l~~~~~~~~~~~l~~g~~Dl~i~~~ 152 (306)
T 3fzv_A 95 GQIDIGCFETVAPLYLPGLIAGFRQAYPGVEIRIRDGEQQELVQGLTSGRFDLAFLYE 152 (306)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHHHHHCTTEEEEEEEECHHHHHHHHHHTSCSEEEECS
T ss_pred ceEEEEechhhhHHHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHCCCccEEEEec
Confidence 467888765443321 11111 2367765432 35667889999999999999863
No 139
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer, regulation, pyridoxal PHOS isoleucine biosynthesis; HET: PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2 d.58.18.2
Probab=28.30 E-value=54 Score=34.29 Aligned_cols=34 Identities=15% Similarity=0.303 Sum_probs=28.3
Q ss_pred EEEEeCCCccHHHHHHHHHHhCCceeeeeeeeeCC
Q 014547 321 IVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHR 355 (423)
Q Consensus 321 ivf~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~ 355 (423)
+.|.+|++||+|.+.|+.+.. +-|++-.+=|-+.
T Consensus 436 ~~~~fpe~~gal~~fl~~~~~-~~~i~~~~yr~~g 469 (514)
T 1tdj_A 436 YSFEFPESPGALLRFLNTLGT-YWNISLFHYRSHG 469 (514)
T ss_dssp EEEECCCCTTHHHHHHHHHCS-CCCCCEEECBCTT
T ss_pred EEEeCCCCCCHHHHHHHhcCC-CceEEEEeecCCC
Confidence 778999999999999999975 5677777777664
No 140
>1pb7_A N-methyl-D-aspartate receptor subunit 1; ligand binding receptor, NR1, ligand binding protein; 1.35A {Rattus norvegicus} SCOP: c.94.1.1 PDB: 1pbq_A* 1y1m_A 1y1z_A 1y20_A 2a5t_A* 1pb8_A 1pb9_A
Probab=27.61 E-value=41 Score=31.04 Aligned_cols=74 Identities=14% Similarity=0.030 Sum_probs=46.2
Q ss_pred CCccHHHHHHhhh------CCCCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh--cCCcEEEEEEEE
Q 014547 135 VPGAYSEAAAGKA------YPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL--RHRLHIVGEVQL 206 (423)
Q Consensus 135 P~GTfSh~AA~~~------f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~--~~~L~IvgEi~l 206 (423)
..|++.+....+. ++..+.+.+.+.++++++|.+|++|..+.. ..+++.+. ..++.++++..-
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~G~vDa~i~d---------~~~~~~~~~~~~~l~~~~~~~~ 246 (292)
T 1pb7_A 176 VKQSSVDIYFRRQVELSTMYRHMEKHNYESAAEAIQAVRDNKLHAFIWD---------SAVLEFEASQKCDLVTTGELFF 246 (292)
T ss_dssp BTTSHHHHHHHTCGGGHHHHHHHTTTCBSSHHHHHHHHHTTSCSEEEEE---------HHHHHHHHHHCTTEEECSSCSE
T ss_pred EcCchHHHHhhhcccHHHHHHHHHhhcCCCHHHHHHHHHcCCceEEEEc---------HHHHHHHHhcCCCEEEcCcccc
Confidence 3466666554332 123456788999999999999999977653 12233222 235777776544
Q ss_pred eeeeeeeecCC
Q 014547 207 PVHHCLLALPG 217 (423)
Q Consensus 207 pI~h~Lla~~g 217 (423)
+..+.++.+++
T Consensus 247 ~~~~~ia~~k~ 257 (292)
T 1pb7_A 247 RSGFGIGMRKD 257 (292)
T ss_dssp EEEECCEEETT
T ss_pred CCceEEEEeCC
Confidence 55566666655
No 141
>1p99_A Hypothetical protein PG110; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.70A {Staphylococcus aureus subsp} SCOP: c.94.1.1
Probab=27.23 E-value=42 Score=32.11 Aligned_cols=71 Identities=7% Similarity=0.010 Sum_probs=48.4
Q ss_pred ccEEEEeCCCccHHHHHHhhhCC----CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh----cCCc
Q 014547 127 QLRVAYQGVPGAYSEAAAGKAYP----NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL----RHRL 198 (423)
Q Consensus 127 ~~~VayLGP~GTfSh~AA~~~f~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~----~~~L 198 (423)
..||||.+|.... ..++.++|. +++++.+.+..+..+|+..|++|++..- . ...++... ..++
T Consensus 40 ~i~IG~~~~~~~~-~~~~~~~~~~~G~~Ve~~~f~~~~~~~~AL~~G~iD~~~~~-------~-~~~l~~~~~~~~g~~l 110 (295)
T 1p99_A 40 KVTIGVASNDTKA-WEKVKELAKKDDIDVEIKHFSDYNLPNKALNDGDIDMNAFQ-------H-FAFLDQYKKAHKGTKI 110 (295)
T ss_dssp CEEEEESSSCCHH-HHHHHHHHGGGTCCEEEEECSSTTSHHHHHHTTSSSEEEEE-------E-HHHHHHHHHHCTTCCE
T ss_pred eEEEEEeCCcHHH-HHHHHHHHHHcCCeEEEEEeCChHHHHHHHHcCCCCEEccC-------C-HHHHHHHHHhcCCCCE
Confidence 5899999665433 444555663 4688999999999999999999998642 2 22334332 2467
Q ss_pred EEEEEEEE
Q 014547 199 HIVGEVQL 206 (423)
Q Consensus 199 ~IvgEi~l 206 (423)
.+++.+..
T Consensus 111 ~~v~~~~~ 118 (295)
T 1p99_A 111 SALSTTVL 118 (295)
T ss_dssp EEEEEEEE
T ss_pred EEEEeecc
Confidence 77776543
No 142
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=26.54 E-value=3.6e+02 Score=24.34 Aligned_cols=116 Identities=11% Similarity=0.036 Sum_probs=60.1
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCC-------C
Q 014547 147 AYPNCEAIPC-DQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPG-------V 218 (423)
Q Consensus 147 ~f~~~e~vp~-~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g-------~ 218 (423)
.+|+.++... .+-+++.+.|.+|++|+|++....... + +..+.......++++.++ .
T Consensus 130 ~~P~v~l~l~~~~~~~~~~~l~~g~~Dl~i~~~~~~~~-------------~--l~~~~l~~~~~~~v~~~~hpl~~~~i 194 (315)
T 1uth_A 130 RAPHIQISTLRPNAGNLKEDMESGAVDLALGLLPELQT-------------G--FFQRRLFRHRYVCMFRKDHPSAKSPM 194 (315)
T ss_dssp HCTTCEEEEECTTSSCHHHHHHHTSCCEEEECCTTCCT-------------T--EEEEEEEEECEEEEEETTCSSCCSSC
T ss_pred HCCCcEEEEEeCCcccHHHHHHCCCCCEEEecCCCCCC-------------C--ceEEEeeccceEEEEeCCCCCcCCCC
Confidence 3687765433 344678899999999999985432111 1 111222223334444333 2
Q ss_pred CcCccc---EE-Eechh-HHHHHHHHHHHcCCce-eEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 219 RKEYLT---RV-ISHPQ-ALSQCEHTLTKLGLNV-AREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 219 ~l~dIk---~V-ySHPq-AL~QC~~fL~~~~p~~-~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
+++++. .| +.... ......+|+.+.+... ....++|.......|..+ ...||.+...++
T Consensus 195 ~~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~v~~g---~giailp~~~~~ 259 (315)
T 1uth_A 195 SLKQFSELEHVGVVALNTGHGEVDGLLERAGIKRRMRLVVPHFIAIGPILHST---DLIATVPQRFAV 259 (315)
T ss_dssp CHHHHHHSEEEEECCTTSGGGGHHHHHHHTTCCCEEEEEESSSTTHHHHHHTS---SCBEEEEHHHHH
T ss_pred CHHHHhcCCeEEEecCCCCCCchhHHHHhcCCCceEEEECCcHHHHHHHHhcC---CEEEEcHHHHHH
Confidence 233332 23 22211 1234566777654322 234466666666777765 346666766554
No 143
>2czl_A Hypothetical protein TTHA1568; conserved hypothetical protein, extremely thermoph bacteria, structural genomics, NPPSFA; HET: CME TLA XPE; 1.55A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 2dbp_A* 3a3u_A*
Probab=25.91 E-value=86 Score=28.18 Aligned_cols=48 Identities=13% Similarity=0.083 Sum_probs=34.9
Q ss_pred cEEEEeCCCccHHHHHHhhhCCCCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f~~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.|||+-+ .|+-++...+.+..+.+++.. .+.++..++.+|++|.++++
T Consensus 97 k~Ia~~~-~~~~~~~ll~~ll~~~~~~~~-~~~~~~~al~~G~vDa~~~~ 144 (272)
T 2czl_A 97 LRVAVPG-RHTTAYFLLSLYAQGFVPVEV-RYDRILPMVAQGEVEAGLII 144 (272)
T ss_dssp CEEEESC-TTSHHHHHHHHHCSSCEEEEC-CGGGHHHHHHTTSSSEEEEC
T ss_pred CEEEeCC-CCchHHHHHHHHhccCceeec-ChHHHHHHHHCCCCCEEEEe
Confidence 4899985 455556655555555555554 45689999999999999986
No 144
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1
Probab=25.24 E-value=75 Score=29.76 Aligned_cols=47 Identities=9% Similarity=0.098 Sum_probs=39.3
Q ss_pred cEEEEeCCCccHHHHHHhhh-CCCCceeec-CCHHHHHHHHHcCCcCeEEE
Q 014547 128 LRVAYQGVPGAYSEAAAGKA-YPNCEAIPC-DQFEVAFQAVELWIADRAVL 176 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~-f~~~e~vp~-~Sf~~Vf~aV~~g~~d~gVV 176 (423)
+|||++ .||.-+..+.+. +.+.+...+ .+..+++.++.+|++|.+|.
T Consensus 113 krVGvd--~gS~dq~~lt~~~~~g~~Ve~ve~~y~~~i~~L~~G~IDA~Iw 161 (231)
T 2ozz_A 113 KRVGLD--SRSADQKIMTDVFFGDSDVERVDLSYHESLQRIVKGDVDAVIW 161 (231)
T ss_dssp CEEEEC--TTCHHHHHHHHHHHTTSCCEEEECCHHHHHHHHHHTSCCEEEE
T ss_pred EEEEec--CCChhHHHHHhhhcCCCeEEEEECCHHHHHHHHHcCCccEEEE
Confidence 699997 789888887663 456666666 88999999999999999998
No 145
>4esw_A Pyrimidine biosynthesis enzyme THI13; thiamin pyrimidine biosynthesis, transferase; HET: CIT; 1.60A {Candida albicans} PDB: 4esx_A*
Probab=25.20 E-value=1.8e+02 Score=27.27 Aligned_cols=88 Identities=10% Similarity=0.004 Sum_probs=54.5
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-cCCcEEEEEEEEeeeeeeeecCCC----CcCccc
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-RHRLHIVGEVQLPVHHCLLALPGV----RKEYLT 224 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L~IvgEi~lpI~h~Lla~~g~----~l~dIk 224 (423)
+++++...+-.++.++|..|++|+|+...+ ..+.... ..++.+++-+.-.-...+++.++. +++|.+
T Consensus 39 dVei~~~~~~~~~~~al~sG~~D~g~~~~~--------~~~~a~~~G~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~dLk 110 (342)
T 4esw_A 39 DIAILEPSNPSDVTELVGSGKVDMGLKAMV--------GTLAAKARGFPVTSIGSLLDEPFTGICYLEGSGITSDFQSLK 110 (342)
T ss_dssp EEEEEEESSGGGHHHHHHHTSSSEEEEEHH--------HHHHHHHTTCCEEEEEEEECSCCEEEEEETTSSCCSSGGGGT
T ss_pred eEEEEeCCChHHHHHHHHcCCcCEEEecHH--------HHHHHHHCCCCeEEEEEeccCCcccccccccccccCCHHHhC
Confidence 467888899999999999999999976433 2222322 346777776654444556665432 233333
Q ss_pred --EEE-echhHHHHHHHHHHHcCC
Q 014547 225 --RVI-SHPQALSQCEHTLTKLGL 245 (423)
Q Consensus 225 --~Vy-SHPqAL~QC~~fL~~~~p 245 (423)
+|. .........+.+|++++.
T Consensus 111 GK~ig~~~~~~~~~l~~~L~~~Gl 134 (342)
T 4esw_A 111 GKRIGYVGEFGKIQVDELTKHYGM 134 (342)
T ss_dssp TCEEEESSSHHHHHHHHHHGGGTC
T ss_pred CCEEEecCCchHHHHHHHHHHcCC
Confidence 443 223344566778887753
No 146
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=23.69 E-value=1.8e+02 Score=29.73 Aligned_cols=101 Identities=13% Similarity=0.088 Sum_probs=60.5
Q ss_pred HHHHHcCCceeecCccCCCCCeeEEEEEeeCCCC-CC----CC---CCCeEEEEEE---eCCCccHHHHHHHHHHhCCce
Q 014547 277 RAAELYGMQVLEDGIQDDSSNVTRFVMLAREPII-PR----TD---RPFKTSIVFA---HDKGTSVLFKVLSAFAFRNIS 345 (423)
Q Consensus 277 ~AAelYgL~ILa~nIqD~~~N~TRFlVLsr~~~~-~~----~~---~~~KTSivf~---l~~~pGaL~~vL~~Fa~~~IN 345 (423)
.-|..+|.++.-.|..+...-=|.|. .+... +. .. ..+-+.|-+. ..+.||.+.++++.|++++||
T Consensus 252 ~~a~~~~ipi~i~~~~~p~~~GT~i~---~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~ 328 (446)
T 3tvi_A 252 FPVKDSGIPINIKNTNKPSDPGTLIL---SDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVS 328 (446)
T ss_dssp HHHHHSSCCEEEEETTBTTSCCEEEE---CTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCC
T ss_pred HHHHHcCCeEEEecCCCCCCCCEEEe---cCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCc
Confidence 34567899998888765444457663 22110 00 00 0112223232 246899999999999999999
Q ss_pred eeeeeeeeCCCCCcccccccCCCCCCcceEEEEEEEecCcChHHHHHHHHHHHhhc
Q 014547 346 LTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFT 401 (423)
Q Consensus 346 LtkIESRP~~~~p~~~~~~~~~G~~~~~eY~FfID~eg~~~d~~v~~aL~eL~~~~ 401 (423)
+-.|.+-. ....|.|+-+. .. ...+.++++|++..
T Consensus 329 vd~i~~~~-------------------~~is~~V~~~d-~~-~~~~~~~~el~~~~ 363 (446)
T 3tvi_A 329 FEHMPSGV-------------------DSVSLVIEDCK-LD-GKCDKIIEEIKKQC 363 (446)
T ss_dssp EEEBCEET-------------------TEEEEEEEHHH-HT-TTHHHHHHHHHHHS
T ss_pred EEEEecCC-------------------CEEEEEEecch-HH-HHHHHHHHHHHHhc
Confidence 99886421 24677776532 11 14567788887654
No 147
>2x26_A Periplasmic aliphatic sulphonates-binding protein; transport protein; 1.75A {Escherichia coli}
Probab=23.47 E-value=86 Score=28.56 Aligned_cols=47 Identities=17% Similarity=-0.005 Sum_probs=33.3
Q ss_pred cEEEEeCCCccHHHHHHhhhC---C----CCceeecCCHHHHHHHHHcCCcCeEEEe
Q 014547 128 LRVAYQGVPGAYSEAAAGKAY---P----NCEAIPCDQFEVAFQAVELWIADRAVLP 177 (423)
Q Consensus 128 ~~VayLGP~GTfSh~AA~~~f---~----~~e~vp~~Sf~~Vf~aV~~g~~d~gVVP 177 (423)
.+|++ +.|+.++....+++ + +.+++ ..+..+++.+|.+|++|.++++
T Consensus 106 k~i~~--~~gs~~~~~l~~~l~~~Gl~~~~v~~~-~~~~~~~~~al~~G~vDa~~~~ 159 (308)
T 2x26_A 106 HKVAF--QKGSSSHNLLLRALRQAGLKFTDIQPT-YLTPADARAAFQQGNVDAWAIW 159 (308)
T ss_dssp SEEEE--CTTSHHHHHHHHHHHHTTCCGGGSEEE-ECCHHHHHHHHHTTSSSEEEEE
T ss_pred CEEee--eCCCcHHHHHHHHHHHcCCCHHHeEEE-ecChHHHHHHHHcCCCCEEEec
Confidence 48888 46888876654433 1 23333 3468999999999999998875
No 148
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=23.42 E-value=74 Score=25.20 Aligned_cols=79 Identities=18% Similarity=0.250 Sum_probs=48.3
Q ss_pred EEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHHHcCCceeecCccC-CCCCeeEEEEE
Q 014547 226 VISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQD-DSSNVTRFVML 304 (423)
Q Consensus 226 VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAelYgL~ILa~nIqD-~~~N~TRFlVL 304 (423)
|=.++......+.+|++.+....+..+.+..+|.+.+.+. +....|.-.......|++++.. |.. .....+.++++
T Consensus 11 vdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~--~~dlii~D~~l~~~~g~~~~~~-lr~~~~~~~~pii~~ 87 (144)
T 3kht_A 11 VEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQVQQA--KYDLIILDIGLPIANGFEVMSA-VRKPGANQHTPIVIL 87 (144)
T ss_dssp ECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHHTTC--CCSEEEECTTCGGGCHHHHHHH-HHSSSTTTTCCEEEE
T ss_pred EeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHhhcC--CCCEEEEeCCCCCCCHHHHHHH-HHhcccccCCCEEEE
Confidence 4457778888999999887655566777888888877654 2344554433334455555543 222 12345667777
Q ss_pred eeC
Q 014547 305 ARE 307 (423)
Q Consensus 305 sr~ 307 (423)
+..
T Consensus 88 s~~ 90 (144)
T 3kht_A 88 TDN 90 (144)
T ss_dssp ETT
T ss_pred eCC
Confidence 654
No 149
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=23.41 E-value=3.2e+02 Score=22.62 Aligned_cols=113 Identities=8% Similarity=-0.002 Sum_probs=64.8
Q ss_pred CCceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhh-cCCcEEEEEEEEeeeeeeeecCCC-------CcC
Q 014547 150 NCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLL-RHRLHIVGEVQLPVHHCLLALPGV-------RKE 221 (423)
Q Consensus 150 ~~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~-~~~L~IvgEi~lpI~h~Lla~~g~-------~l~ 221 (423)
+.++++..++.++++++++|++|+++-++.- ..+....+. ...+. .....++++++. +++
T Consensus 41 ~~~~~~~~~~~~~~~~l~~g~~D~~~~~~~~-----~~~r~~~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~ 108 (228)
T 2pyy_A 41 ESKLIEYSSVPELISAIKDNKVNLGIAAISI-----TAEREQNFDFSLPIF-------ASGLQIMVRNLESGTGDIRSID 108 (228)
T ss_dssp CEEEEECSSHHHHHHHHHTTSCSEECSSCBC-----CHHHHHHSEECSCSE-------EEEEEEEEEC-----CCCCSGG
T ss_pred cEEEEEcCCHHHHHHHHHCCCcCEEEecccc-----CHHHHccceecccch-------hcceEEEEECCccccCCcCCHH
Confidence 5678888899999999999999988633211 111111111 11222 223445554431 233
Q ss_pred ccc--EEEechhHHHHHHHHHHHcCCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 222 YLT--RVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 222 dIk--~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
|++ +|...... . ...+|++.. +.++.+.+..++.+++..+ +-.|+|.....+.
T Consensus 109 dL~g~~i~~~~g~-~-~~~~l~~~~--~~~~~~~~~~~~~~~l~~g--~~D~~~~~~~~~~ 163 (228)
T 2pyy_A 109 DLPGKVVATTAGS-T-AATYLREHH--ISVLEVPKIEEAYKALQTK--KADAVVFDAPVLL 163 (228)
T ss_dssp GCTTCEEEEETTS-H-HHHHHHHTT--CEEEEESSHHHHHHHHHTT--SSSEEEEEHHHHH
T ss_pred HcCCCeEEEEcCc-H-HHHHHHHcC--CceEecCCHHHHHHHHHcC--CCCEEEecHHHHH
Confidence 332 44432221 1 345777653 4667788889999999875 3567777766554
No 150
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=23.33 E-value=4e+02 Score=23.72 Aligned_cols=118 Identities=10% Similarity=0.071 Sum_probs=64.3
Q ss_pred hCCCCceeec-CCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhcCCcEEEEEEEEeeeeeeeecCCC------C
Q 014547 147 AYPNCEAIPC-DQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV------R 219 (423)
Q Consensus 147 ~f~~~e~vp~-~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~~~L~IvgEi~lpI~h~Lla~~g~------~ 219 (423)
.+|+.++... .+-+++.+.+.+|++|+|+....... ...+ +..+......+++++.++- +
T Consensus 117 ~~P~i~i~l~~~~~~~~~~~l~~g~~Dlai~~~~~~~-----------~~~~--l~~~~L~~~~~~~v~~~~hpla~~~~ 183 (305)
T 3fxq_A 117 EFPDVTVNVRDGMYPAVSPQLRDGTLDFALTAAHKHD-----------IDTD--LEAQPLYVSDVVIVGQRQHPMANATR 183 (305)
T ss_dssp HCTTCEEEEEECCTTTTHHHHHHTSSSEEEEECCGGG-----------SCTT--EEEEEEEECCEEEEEETTCTTTTCCS
T ss_pred HCCCCEEEEEECCHHHHHHHHHcCCCCEEEecCCCCC-----------CccC--eeEEEeecCcEEEEEcCCCCCCCCCC
Confidence 4687765433 34567888999999999998643110 0111 2233333344555554432 2
Q ss_pred cCcc---cEEEe-chhH-HHHHHHHHHHcCC-ce-eEEeccCHHHHHHHHHhcCCCCeeEEccHHHHH
Q 014547 220 KEYL---TRVIS-HPQA-LSQCEHTLTKLGL-NV-AREAVDDTAGAAEYIAANDLRDTAAIASARAAE 280 (423)
Q Consensus 220 l~dI---k~VyS-HPqA-L~QC~~fL~~~~p-~~-~~v~~~STA~AA~~va~~~~~~~AAIaS~~AAe 280 (423)
++++ ..|.. .... -....+|+.+++. .. ....++|...+.++++.+ ...|+.+...++
T Consensus 184 ~~dL~~~~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~v~~g---~gia~lp~~~~~ 248 (305)
T 3fxq_A 184 LAELQECRWAFSSAPRGPGAIIRNAFARYGLPEPKLGLVCESFLALPGVVAHS---DLLTTMPRTLYE 248 (305)
T ss_dssp GGGGTTSEEEEECCTTSTTHHHHHHHHHTTCCCCEEEEEECCTTTHHHHHHTS---SCEEEEEHHHHH
T ss_pred HHHHhCCCeEeeCCCCCHHHHHHHHHHHcCCCCCCceEEeCCHHHHHHHHHhC---CEEEEeeHHHHh
Confidence 2333 33432 2221 2456677777643 22 234466777777777765 346777776664
No 151
>2qrr_A Methionine import ATP-binding protein METN; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; 1.71A {Vibrio parahaemolyticus} SCOP: d.58.18.13
Probab=22.75 E-value=96 Score=24.68 Aligned_cols=31 Identities=23% Similarity=0.284 Sum_probs=26.3
Q ss_pred EEEEEEecCcChHHHHHHHHHHHhhcCceEEEc
Q 014547 376 MFYIDFEASMAEVRAQNALAEVQEFTSFLRVLG 408 (423)
Q Consensus 376 ~FfID~eg~~~d~~v~~aL~eL~~~~~~vrvLG 408 (423)
.++|++.|. +..++++++-|++....+.++|
T Consensus 68 ~L~v~l~G~--~~~~~~ai~~L~~~~v~vEvlg 98 (101)
T 2qrr_A 68 MMVAELFGN--EQDDSAAIEYLRENNVKVEVLG 98 (101)
T ss_dssp EEEEEEESC--HHHHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEEeCC--HHHHHHHHHHHHHcCCEEEEec
Confidence 678899884 5678999999999988888887
No 152
>2vd2_A ATP phosphoribosyltransferase; HISG, glycosyltransferase, histidine biosynthes amino-acid biosynthesis; 2.85A {Bacillus subtilis}
Probab=22.55 E-value=92 Score=28.99 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=84.0
Q ss_pred CCccEEEEeCCCccHHHHHHhhh------CC-----CCce----------eecCCHHHHHHHHHcCCcCeEEEeeccCCC
Q 014547 125 GSQLRVAYQGVPGAYSEAAAGKA------YP-----NCEA----------IPCDQFEVAFQAVELWIADRAVLPVENSLG 183 (423)
Q Consensus 125 ~~~~~VayLGP~GTfSh~AA~~~------f~-----~~e~----------vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~ 183 (423)
|.+++||.. +|.-.+.+..-+ +. +-++ +.+-.-.|+-.-|+.|.+|+||+=
T Consensus 3 ~~mL~iAlp--KGRL~e~t~~ll~~aGi~~~~~~~~~R~l~~~~~~~~v~~~~~R~~DIp~yV~~G~~DlGItG------ 74 (214)
T 2vd2_A 3 GKLLTMAMP--KGRIFEEAAGLLRQAGYRLPEEFEDSRKLIIDVPEENLRFILAKPMDVTTYVEHGVADVGIAG------ 74 (214)
T ss_dssp CCCEEEEEE--CSTTHHHHHHHHHHHTCCCCGGGTTCCCSEEEEGGGTEEEEEECTTHHHHHHHHTSSSEEECC------
T ss_pred CccEEEEEc--ccccHHHHHHHHHHcCCCccCCCCCCCceEeecCCCCEEEEEECchhHHHHHhCCCccEEEee------
Confidence 456899987 999998875421 10 1111 122334688899999999999763
Q ss_pred CchHHHHHHhhcCCcEEEEEEEEeeeee---eeecCCCCcCc-ccEEEechhHHHHHHHHHHHcCCceeEEeccCHHHHH
Q 014547 184 GSIHRNYDLLLRHRLHIVGEVQLPVHHC---LLALPGVRKEY-LTRVISHPQALSQCEHTLTKLGLNVAREAVDDTAGAA 259 (423)
Q Consensus 184 G~V~~tlDlL~~~~L~IvgEi~lpI~h~---Lla~~g~~l~d-Ik~VySHPqAL~QC~~fL~~~~p~~~~v~~~STA~AA 259 (423)
.|.|.+++..+.--..|.+.+| ++++++.+.++ =++|.+-..-+ .++|+++++.+++++..+-.-|.|
T Consensus 75 ------~D~l~E~~~~v~el~dLgfG~crl~vAvp~~~~~~~~~~RIATkyp~l--~~~yf~~~gi~~~ii~l~GsvE~a 146 (214)
T 2vd2_A 75 ------KDVMLEEERDVYEVLDLNISKCHLAVAGLPNTDWSGVAPRIATKYPNV--ASSYFREQGEQVEIIKLNGSIELA 146 (214)
T ss_dssp ------THHHHSCSCSSEEEEECTTSCCEEEEEECTTCCCCSSSCEEEESCHHH--HHHHHHHHCCCCEEEECCSCTTHH
T ss_pred ------eeeeeecCCCeEEeeccccCCEEEEEEEECCCChhhCCcEEEECcHHH--HHHHHHHcCCcEEEEECCCceeec
Confidence 4777776433333345655544 55655432222 34666665544 578999988888887655444433
Q ss_pred HHHHhcCCCCeeEE-ccHHHHHHcCCceee
Q 014547 260 EYIAANDLRDTAAI-ASARAAELYGMQVLE 288 (423)
Q Consensus 260 ~~va~~~~~~~AAI-aS~~AAelYgL~ILa 288 (423)
=.+ +-....+=| .+-..-+.+||++++
T Consensus 147 P~~--GlADaIvDivsTG~TLraNgL~~ie 174 (214)
T 2vd2_A 147 PLI--GLADRIVDIVSTGQTLKENGLVETE 174 (214)
T ss_dssp HHT--TSCSEEEEEECCSSSSCTTSCEEEE
T ss_pred cCC--CCceEEEEEeCCHHHHHHCCCEEeE
Confidence 221 100112222 233345677888874
No 153
>1ryo_A Serotransferrin; iron transport, metal transport; 1.20A {Homo sapiens} SCOP: c.94.1.2 PDB: 1bp5_A 1btj_A 1n84_A 1oqg_A 2o84_X 1fqf_A 1fqe_A 1oqh_A 2o7u_B 1jqf_A 1n7x_A 3fgs_A 1a8e_A 1a8f_A 1suv_C 1dtg_A 1d3k_A 1d4n_A 1n7w_A 1b3e_A ...
Probab=20.82 E-value=3.9e+02 Score=25.98 Aligned_cols=66 Identities=17% Similarity=0.217 Sum_probs=47.0
Q ss_pred EEechhHHHHHHHHHHHc-------CCceeEEeccCHHHHHHHHHhcCCCCeeEEccHHH--H--HHcCCceeecCccC
Q 014547 226 VISHPQALSQCEHTLTKL-------GLNVAREAVDDTAGAAEYIAANDLRDTAAIASARA--A--ELYGMQVLEDGIQD 293 (423)
Q Consensus 226 VySHPqAL~QC~~fL~~~-------~p~~~~v~~~STA~AA~~va~~~~~~~AAIaS~~A--A--elYgL~ILa~nIqD 293 (423)
|.|+.+ +..|+.|.... .+.++.+...|..+.++.+..++ -+.+.+.+... | +.|||+.+.....+
T Consensus 10 v~s~~e-~~KC~~l~~~~~~~~~~~~~~vecv~~~dy~~ci~ai~~g~-aD~~~l~~~~~~~A~~~~~~l~pi~ae~~~ 86 (327)
T 1ryo_A 10 AVSEHE-ATKCQSFRDHMKSVIPSDGPSVACVKKASYLDCIRAIAANE-ADAVTLDAGLVYDAYLAPNNLKPVVAEFYG 86 (327)
T ss_dssp EEHHHH-HHHHHHHHHHHHHHSCTTSCEEEEEEESSHHHHHHHHHTTS-CCBEEECHHHHHHHHSTTTCCEEEEEEEEE
T ss_pred ECCHHH-HHHHHHHHHHHhhccccCCCceEEEecCCHHHHHHHHHcCC-CcEEEeCccceeEEecccCCCEEEEEEEec
Confidence 456655 88999987653 56788999999999999999764 45666755432 4 35899877654443
No 154
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=20.66 E-value=1.8e+02 Score=30.82 Aligned_cols=38 Identities=18% Similarity=0.186 Sum_probs=30.4
Q ss_pred eEEEEE-EeCCCccHHHHHHHHHHhCCceeeeeeeeeCC
Q 014547 318 KTSIVF-AHDKGTSVLFKVLSAFAFRNISLTKIESRPHR 355 (423)
Q Consensus 318 KTSivf-~l~~~pGaL~~vL~~Fa~~~INLtkIESRP~~ 355 (423)
.+.|.+ .++++||...++++.++++|||.--|..-+..
T Consensus 444 ~a~i~i~~~~~~~g~~~~if~~La~~~I~vDmI~q~~~~ 482 (600)
T 3l76_A 444 QAQIAIRHVPDRPGMAAQLFTALAEANISVDMIIQSQRC 482 (600)
T ss_dssp EEEEEEEEEESSTTHHHHHHHHHHHTTCCCCEEEEEEEC
T ss_pred EEEEEEecCCCCccHHHHHHHHHHHcCCcEEEEEecccc
Confidence 444444 57899999999999999999999888665543
No 155
>1us5_A Putative GLUR0 ligand binding core; receptor, membrane protein, glutamate receptor, L-glutamate; HET: GLU; 1.5A {Thermus thermophilus} SCOP: c.94.1.1 PDB: 1us4_A*
Probab=20.37 E-value=4.7e+02 Score=23.49 Aligned_cols=137 Identities=9% Similarity=0.079 Sum_probs=0.0
Q ss_pred ccEEEEeCCCccHH------HHHHhhhCCC--CceeecCCHHHHHHHHHcCCcCeEEEeeccCCCCchHHHHHHhhc---
Q 014547 127 QLRVAYQGVPGAYS------EAAAGKAYPN--CEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGSIHRNYDLLLR--- 195 (423)
Q Consensus 127 ~~~VayLGP~GTfS------h~AA~~~f~~--~e~vp~~Sf~~Vf~aV~~g~~d~gVVPIENS~~G~V~~tlDlL~~--- 195 (423)
..+|++.++-|+|- .+...+.+++ +++.+..+-.+.+++|.+|++|++++. .........
T Consensus 20 ~i~i~~~~~~g~~~~~~~~la~~~~~~~~g~~v~v~~~~~~~~~~~~l~~g~~Dl~~~~---------~~~~~~~~~~~~ 90 (314)
T 1us5_A 20 FITIGSGSTTGVYFPVATGIAKLVNDANVGIRANARSTGGSVANINAINAGEFEMALAQ---------NDIAYYAYQGCC 90 (314)
T ss_dssp EEEEECCCTTSSHHHHHHHHHHHHHHHTSSEEEEEECCSCHHHHHHHHHTTSCSEEEEE---------HHHHHHHHHTCS
T ss_pred eEEEEeCCCCchhHHHHHHHHHHHHhcCCCceEEEEecCcHHHHHHHHHcCCCcEEEEc---------cHhHHHHhcCCC
Q ss_pred ---------CCcEEEEEEEEeeeeeeeecCCCCcCcccEEEechhHH--------HHHHHHHHHcCCcee---EEeccCH
Q 014547 196 ---------HRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQAL--------SQCEHTLTKLGLNVA---REAVDDT 255 (423)
Q Consensus 196 ---------~~L~IvgEi~lpI~h~Lla~~g~~l~dIk~VySHPqAL--------~QC~~fL~~~~p~~~---~v~~~ST 255 (423)
.++..++ ....-...|+++++..+.+++.+..++-+. .....++++.+.+.. .....+.
T Consensus 91 ~~~~~~~~~~~~~~v~-~~~~~~~~lvv~~~~~i~sl~dL~g~~i~~~~~gs~~~~~~~~~l~~~G~~~~~v~~~~~~~~ 169 (314)
T 1us5_A 91 IPAFEGKPVKTIRALA-ALYPEVVHVVARKDAGIRTVADLKGKRVVVGDVGSGTEQNARQILEAYGLTFDDLGQAIRVSA 169 (314)
T ss_dssp STTTTTCCCTTEEEEE-EEEEEEEEEEEETTSSCSSGGGGTTSEEECCCTTCHHHHHHHHHHHHTTCCGGGSSEEECCCH
T ss_pred CCCCCCCCccchhehh-hcCcceEEEEEECCCCCCcHHHhCCCEeecCCCCchHHHHHHHHHHHcCCCHHHcCceecCCH
Q ss_pred HHHHHHHHhcCCCCeeEEcc
Q 014547 256 AGAAEYIAANDLRDTAAIAS 275 (423)
Q Consensus 256 A~AA~~va~~~~~~~AAIaS 275 (423)
+++...+..+ .-.+++..
T Consensus 170 ~~~~~al~~G--~vda~~~~ 187 (314)
T 1us5_A 170 SQGIQLMQDK--RADALFYT 187 (314)
T ss_dssp HHHHHHHHTT--SCSEEEEE
T ss_pred HHHHHHHHcC--CccEEEEc
Done!