RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014547
(423 letters)
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL
tepidum TLS, structural genomics, PSI-2, protein
structure initiative; HET: PHE; 2.30A {Chlorobium
tepidum tls}
Length = 283
Score = 405 bits (1042), Expect = e-142
Identities = 126/294 (42%), Positives = 167/294 (56%), Gaps = 25/294 (8%)
Query: 126 SQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLGGS 185
+ +AYQG PGAYSE AA + E +PC+ F+ F AV AD AV+P+ENSLGGS
Sbjct: 5 TNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSLGGS 61
Query: 186 IHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGL 245
IH+NYDLLLR + I+ E + V HCLL LPG E T+ +SHPQAL QC +
Sbjct: 62 IHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATH-P 120
Query: 246 NVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRFVMLA 305
+ EA DTAG+A+ +A + + AIAS RA ELYG+ +L++ + D+ N+TRF +A
Sbjct: 121 QIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFCIA 180
Query: 306 REPIIPRTDRPF-------KTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRP 358
E + KTSIVFA LF+ L+ FA R I LTKIESRP R +
Sbjct: 181 HENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSRKKA 240
Query: 359 IRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPM 412
FEY+FY DF + NAL ++EF + ++VLGSY +
Sbjct: 241 --------------FEYLFYADFIGHREDQNVHNALENLREFATMVKVLGSYGV 280
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics,
midwest center for ST genomics, protein structure
initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter
aurescens}
Length = 313
Score = 374 bits (962), Expect = e-129
Identities = 83/303 (27%), Positives = 133/303 (43%), Gaps = 20/303 (6%)
Query: 126 SQLRVAYQGVPGAYSEAAAGKAY--PNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLG 183
S + + G G ++EAA + + IPC A + V AD A++P+ENS+
Sbjct: 5 SAVTYTFLGPQGTFTEAALMQVPGAADATRIPCTNVNTALERVRAGEADAAMVPIENSVE 64
Query: 184 GSIHRNYDLLLR-HRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTK 242
G + D + L I+ E +P+ L+A PGV + R+ +H A +QC + +
Sbjct: 65 GGVTATLDAIATGQELRIIREALVPITFVLVARPGVELSDIKRISTHGHAWAQCRLWVDE 124
Query: 243 LGLNVAREAVDDTAGAAEYIAAN-DLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRF 301
N TA +A + + + A A AAE G+ VL + I D+ VTRF
Sbjct: 125 HLPNADYVPGSSTAASAMGLLEDDAPYEAAICAPLIAAEQPGLNVLAEDIGDNPDAVTRF 184
Query: 302 VMLAREPIIPRTDRPFKTSIVFAHDKGTS-VLFKVLSAFAFRNISLTKIESRPHRNRPIR 360
++++R +P KT++V + L ++L FA R ++L++IESRP
Sbjct: 185 ILVSRPGALPERTGADKTTVVVPLPEDHPGALMEILDQFASRGVNLSRIESRPTGQYL-- 242
Query: 361 LVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSYPM-DMTPWSP 419
Y F ID + + R +ALA + + R LGSY D P
Sbjct: 243 ------------GHYFFSIDADGHATDSRVADALAGLHRISPATRFLGSYARADKQPAVV 290
Query: 420 SRG 422
+
Sbjct: 291 APH 293
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase
(PDT), staphylococcus aureu aureus MU50, structural
genomics, PSI-2; 2.30A {Staphylococcus aureus subsp}
SCOP: c.94.1.1 d.58.18.3
Length = 267
Score = 360 bits (927), Expect = e-124
Identities = 63/287 (21%), Positives = 123/287 (42%), Gaps = 24/287 (8%)
Query: 126 SQLRVAYQGVPGAYSEAAAGKAYPNCEA--IPCDQFEVAFQAVELWIADRAVLPVENSLG 183
+ +++ Y G G +S A + + EA P +AV V+P+ENS+
Sbjct: 2 NAMQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIE 61
Query: 184 GSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKL 243
G+I+ D L + + GE++L ++ L + +V S A+SQ + + +
Sbjct: 62 GTINIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQH 121
Query: 244 GLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRFVM 303
+ + VD T + I AAIA + E YG ++ I+D NVTRF++
Sbjct: 122 QFDY--DYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLV 175
Query: 304 LAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVD 363
+ + + ++ +L VL+ FA NI+L+ IESRP + +
Sbjct: 176 IKNQQQFD-QNATSLMFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL----- 229
Query: 364 DANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVLGSY 410
Y F++ ++++ + +A ++ + ++G++
Sbjct: 230 ---------GMYRFFVQADSAITT-DIKKVIAILETLDFKVEMIGAF 266
>3luy_A Probable chorismate mutase; structural genomics, APC38059,
3-phenylp PSI-2, protein structure initiative; HET: PPY;
2.00A {Bifidobacterium adolescentis}
Length = 329
Score = 355 bits (914), Expect = e-121
Identities = 64/315 (20%), Positives = 108/315 (34%), Gaps = 39/315 (12%)
Query: 126 SQLRVAYQGVPGAYSEAAAGKAYP--------NCEAIPCDQFEVAFQAVELWIADRAVLP 177
S ++ Y G G ++ AA A + +P D A + ++
Sbjct: 5 SARKLFYLGPQGTFTHQAAVNAAQELARFEPQGFDLMPMDDVPQILDAAQHG-DGWGIVA 63
Query: 178 VENSLGGSIHRNYDLLLRHR-LHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQC 236
EN++ G + N D L+ + L V + V G +HP L+QC
Sbjct: 64 WENNVEGYVVPNLDALIDAKDLVGFARVGVNVEFDAYVAQGADPAEARIATAHPHGLAQC 123
Query: 237 EHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSS 296
+ + + L+ + A A + + A A ELY + + IQD
Sbjct: 124 KRFIAEHRLST--QPATSNAAACRDLIPGE----IAFGPAICGELYDITRIGTAIQDYQG 177
Query: 297 NVTRFVMLAREPIIPRTDRPF---------KTSIVFAHDKGTSVLFKVLSAFAFRNISLT 347
T F++L+ + R + G VL +L F +++T
Sbjct: 178 AATDFLVLSPRAEVARLLAKPRAEANVEYESVLTLIPLVTGPGVLANLLDVFRDAGLNMT 237
Query: 348 KIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVL 407
SRP + R Y F + +A+ E R ++AL E+ E + + L
Sbjct: 238 SFISRPIKGRT--------------GTYSFIVTLDAAPWEERFRDALVEIAEHGDWAKTL 283
Query: 408 GSYPMDMTPWSPSRG 422
YP P P
Sbjct: 284 AVYPRREHPNPPVTS 298
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid
hydroxylase, phosphorylation, intrasteric regulation,
allosteric regulation; 2.20A {Rattus norvegicus} SCOP:
d.58.18.3 d.178.1.1 PDB: 2phm_A
Length = 429
Score = 74.0 bits (181), Expect = 2e-14
Identities = 28/148 (18%), Positives = 48/148 (32%), Gaps = 25/148 (16%)
Query: 278 AAELYGMQVLEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKVLS 337
AA + VL + D + +++ S++F+ + L KVL
Sbjct: 2 AAVVLENGVLSRKLSDFGQETSYIE--------DNSNQNGAISLIFSLKEEVGALAKVLR 53
Query: 338 AFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEV 397
F +I+LT IESRP R EY F+ + + + +
Sbjct: 54 LFEENDINLTHIESRPSRLNK--------------DEYEFFTYLDKRTKP-VLGSIIKSL 98
Query: 398 QEFTSFLRVLGSYPMDM--TPWSPSRGE 423
+ S + PW P +
Sbjct: 99 RNDIGATVHELSRDKEKNTVPWFPRTIQ 126
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 55.1 bits (132), Expect = 4e-08
Identities = 47/259 (18%), Positives = 73/259 (28%), Gaps = 93/259 (35%)
Query: 25 RVQCVYR---------SDSVHFPNGI--------GCSRTDWQSSCAILSSNVVSQQQSGD 67
R Y DS+ G+ ++ Q + +N
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQD--YVNKTN---SHLPAG 363
Query: 68 KPAEHIAAVNGHKTSIDLNLV---PIE-------HANSAAATASNNKPQLP--PQKP--- 112
K I+ VNG K NLV P + A A + ++ ++P +K
Sbjct: 364 KQV-EISLVNGAK-----NLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFS 417
Query: 113 ---LTITDLSPAPMHGSQLRVAYQGVPGAYSEAAAGKAYPNCEAIPCDQFEVAFQAVELW 169
L + +P H L A + + V+F A ++
Sbjct: 418 NRFLPVA----SPFHSHLLVPASDLINKDLVKN-----------------NVSFNAKDIQ 456
Query: 170 IADRAVLPVENSLGGS---------IHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGV-- 218
I PV ++ GS R D ++R + Q H L PG
Sbjct: 457 I------PVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGAS 510
Query: 219 RKEYLT---------RVIS 228
LT RVI
Sbjct: 511 GLGVLTHRNKDGTGVRVIV 529
Score = 48.9 bits (116), Expect = 3e-06
Identities = 46/309 (14%), Positives = 81/309 (26%), Gaps = 125/309 (40%)
Query: 125 GSQLRVAYQGVPGAYSEAAAGK-AYPNCEAIPCDQFEVAFQAVELWIADRAVLPVENSLG 183
GSQ QG+ G Y + A ++W +RA +++ G
Sbjct: 1625 GSQ----EQGM---------GMDLY--------KTSKAAQ---DVW--NRADNHFKDTYG 1658
Query: 184 GSIHRNYDLLLRHRLHIVGE--VQLPVHHCLLALPGVRKEY------------------- 222
SI L IV V L +H +R+ Y
Sbjct: 1659 FSI-----------LDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 223 ------LTRVI-SHPQ-ALSQCEHT----LTKLGLNVA-----REA--VDDTAGAA---- 259
T + LS + T + A + + A A
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTL---MEKAAFEDLKSKGLIPADATFAGHSL 1764
Query: 260 -EYIA----AN--DLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRFVMLAREP---- 308
EY A A+ + + R G ++ + D + + M+A P
Sbjct: 1765 GEYAALASLADVMSIESLVEVVFYR-----G-MTMQVAVPRDELGRSNYGMIAINPGRVA 1818
Query: 309 --------------IIPRTDRP-----FKTS---IVFA-HDKGTSVLFKVLSAFAFRNIS 345
+ RT + V A + + VL+ + I
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKID 1878
Query: 346 LTKIESRPH 354
+ +++
Sbjct: 1879 IIELQKSLS 1887
Score = 40.4 bits (94), Expect = 0.001
Identities = 38/257 (14%), Positives = 68/257 (26%), Gaps = 97/257 (37%)
Query: 224 TR--VISHPQALSQCEHTLTKLGLNVAREAVDDTAGAAEYIAANDLRDT-AAIASARAAE 280
TR +SH EH L V A + A+ L++ I
Sbjct: 6 TRPLTLSHGSL----EHVL-----LVP---------TASFFIASQLQEQFNKILPEPTEG 47
Query: 281 LYGMQVLEDGIQDD--SSN---VTRFVMLAREPIIPRTDRPFKTSIVFAHDKGTSVLFKV 335
DD ++ V +F+ + P F VL
Sbjct: 48 F---------AADDEPTTPAELVGKFLGYVSSLVEPSKVGQF-----------DQVLNLC 87
Query: 336 LSAF--AF---RNI-----SLTKI----------------ESRPHRNRPIR------LVD 363
L+ F + +I L + +R RP L
Sbjct: 88 LTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFR 147
Query: 364 DANVGTAKHF----------EYM-----FYIDFEASMAEV--RAQNALAEVQEFTSFLRV 406
G A+ +Y Y + + ++ + L+E+ T
Sbjct: 148 AVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK 207
Query: 407 LGSYPMDMTPW--SPSR 421
+ + +++ W +PS
Sbjct: 208 VFTQGLNILEWLENPSN 224
Score = 39.3 bits (91), Expect = 0.003
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 70/198 (35%)
Query: 266 DLRDTAAIASA---RA----AELYGMQVLEDGIQDDSSNVT-------------RFVMLA 305
DL T+ A RA + YG +L D + ++ N+T + +
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSIL-DIVINNPVNLTIHFGGEKGKRIRENYSAMI 1692
Query: 306 REPII---PRTDRPFK------TSIVFAHDKG----TSV----LFKVLSAFAFRNISLTK 348
E I+ +T++ FK TS F +KG T L ++ AF ++
Sbjct: 1693 FETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALT-LMEKAAFEDL---- 1747
Query: 349 IESRPHRNRPIRLVDDANVGTAKHFEYMFYIDFEASMAEVRAQNALAEVQEFTSFLRVL- 407
+++ + D G H S+ E A +LA+V S + V+
Sbjct: 1748 ------KSKGLIPADATFAG---H-----------SLGEYAALASLADVMSIESLVEVVF 1787
Query: 408 --GSYPMDMTPWSPSRGE 423
G P R E
Sbjct: 1788 YRGMTMQVAVP----RDE 1801
Score = 31.9 bits (72), Expect = 0.47
Identities = 38/220 (17%), Positives = 72/220 (32%), Gaps = 65/220 (29%)
Query: 115 ITDLSPAPMHGSQLR---VAYQGVPGAYSEAAAGKAYPNCEAIPCDQF-EVAFQAVEL-- 168
+ +P + S L+ QG+ A + A + F +A+ +
Sbjct: 255 LLGFTPGELR-SYLKGATGHSQGLVTAVAIAETDSW---------ESFFVSVRKAITVLF 304
Query: 169 WIADRA--VLPVENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRV 226
+I R P SL SI + L + E +P +L++ + +E +
Sbjct: 305 FIGVRCYEAYPNT-SLPPSILEDS---LEN-----NE-GVP--SPMLSISNLTQEQVQDY 352
Query: 227 ISH-PQALSQCEHTLTKLGL-NVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGM 284
++ L + ++ L N A+ V +G + LYG+
Sbjct: 353 VNKTNSHLPAGKQV--EISLVNGAKNLV--VSGPPQ-------------------SLYGL 389
Query: 285 QV-LEDGIQDDSSNVTRFVMLAREPIIPRTDRPFKTSIVF 323
+ L + +R IP ++R K S F
Sbjct: 390 NLTLRKAKAPSGLDQSR---------IPFSERKLKFSNRF 420
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.391
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,356,369
Number of extensions: 387911
Number of successful extensions: 936
Number of sequences better than 10.0: 1
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 11
Length of query: 423
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 327
Effective length of database: 4,021,377
Effective search space: 1314990279
Effective search space used: 1314990279
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.7 bits)