RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= 014547
         (423 letters)



>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus
           aureus [TaxId: 1280]}
          Length = 184

 Score =  153 bits (386), Expect = 3e-45
 Identities = 42/187 (22%), Positives = 77/187 (41%), Gaps = 8/187 (4%)

Query: 128 LRVAYQGVPGAYSEAAAGKAYPNCEA--IPCDQFEVAFQAVELWIADRAVLPVENSLGGS 185
           +++ Y G  G +S  A  + +   EA   P        +AV        V+P+ENS+ G+
Sbjct: 1   MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGT 60

Query: 186 IHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEYLTRVISHPQALSQCEHTLTKLGL 245
           I+   D L +  +   GE++L ++  L          + +V S   A+SQ  + + +   
Sbjct: 61  INIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQF 120

Query: 246 NVAREAVDDTAGAAEYIAANDLRDTAAIASARAAELYGMQVLEDGIQDDSSNVTRFVMLA 305
           +         +              AAIA   + E YG   ++  I+D   NVTRF+++ 
Sbjct: 121 DYDYVDSTIQSLTKIENGV------AAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIK 174

Query: 306 REPIIPR 312
            +    +
Sbjct: 175 NQQQFDQ 181


>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal
           domain {Staphylococcus aureus [TaxId: 1280]}
          Length = 80

 Score = 83.6 bits (207), Expect = 9e-21
 Identities = 17/92 (18%), Positives = 40/92 (43%), Gaps = 15/92 (16%)

Query: 319 TSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHFEYMFY 378
             ++        +L  VL+ FA  NI+L+ IESRP + +                 Y F+
Sbjct: 3   MFLITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQL--------------GMYRFF 48

Query: 379 IDFEASMAEVRAQNALAEVQEFTSFLRVLGSY 410
           +  ++++     +  +A ++     + ++G++
Sbjct: 49  VQADSAITT-DIKKVIAILETLDFKVEMIGAF 79


>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal
           domain {Rat (Rattus norvegicus) [TaxId: 10116]}
          Length = 97

 Score = 69.5 bits (170), Expect = 2e-15
 Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 16/96 (16%)

Query: 314 DRPFKTSIVFAHDKGTSVLFKVLSAFAFRNISLTKIESRPHRNRPIRLVDDANVGTAKHF 373
           ++    S++F+  +    L KVL  F   +I+LT IESRP R                  
Sbjct: 12  NQNGAISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNK--------------D 57

Query: 374 EYMFYIDFEASMAEVRAQNALAEVQEFTS-FLRVLG 408
           EY F+   +         + +  ++      +  L 
Sbjct: 58  EYEFFTYLDKRTKP-VLGSIIKSLRNDIGATVHELS 92


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0668    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,489,740
Number of extensions: 65776
Number of successful extensions: 127
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 4
Length of query: 423
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 335
Effective length of database: 1,199,356
Effective search space: 401784260
Effective search space used: 401784260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.7 bits)