BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014548
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3URF|Z Chain Z, Human RanklOPG COMPLEX
Length = 171
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 362 DTWYADDSPRIGDKVCHFYHYFKQQCHKTYNRVFMNLFAVFLKWAFI 408
D+W+ D VC Y KQ+C++T+NRV +L+ F
Sbjct: 51 DSWHTSDECLYCSPVCKELQYVKQECNRTHNRVCECKEGRYLEIEFC 97
>pdb|4E4D|R Chain R, Crystal Structure Of Mouse Rankl-Opg Complex
Length = 183
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 362 DTWYADDSPRIGDKVCHFYHYFKQQCHKTYNRVFMNLFAVFLKWAFI 408
D+W+ D VC KQ+C++T+NRV +L+ F
Sbjct: 51 DSWHTSDECVYCSPVCKELQSVKQECNRTHNRVCECEEGRYLEIEFC 97
>pdb|3U28|A Chain A, Crystal Structure Of A Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
pdb|3UAI|A Chain A, Structure Of The Shq1-Cbf5-Nop10-Gar1 Complex From
Saccharomyces Cerevisiae
Length = 400
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
EG +LY + + +T + +A + L+ C G +AS+ C RDL+P+
Sbjct: 294 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 348
>pdb|3ZV0|C Chain C, Structure Of The Shq1p-Cbf5p Complex
pdb|3ZV0|D Chain D, Structure Of The Shq1p-Cbf5p Complex
Length = 195
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 155 NEGAQLYFRGQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK 211
EG +LY + + +T + +A + L+ C G +AS+ C RDL+P+
Sbjct: 103 EEGIELY--DEIVLITTKGEAIAVAIAQMSTVDLASCDHGVVASVKRCIMERDLYPR 157
>pdb|3F6R|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|C Chain C, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6R|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin
pdb|3F6S|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F6S|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Oxidized
Flavodoxin Alternate Conformers
pdb|3F90|A Chain A, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|B Chain B, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|D Chain D, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|E Chain E, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|F Chain F, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|H Chain H, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|I Chain I, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
pdb|3F90|G Chain G, Desulfovibrio Desulfuricans (Atcc 29577) Semiquinone
Flavodoxin
Length = 148
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 43/97 (44%), Gaps = 4/97 (4%)
Query: 164 GQRIWLTAMQDLMAKGMQNADQALLSGCSAGGLASILHCDEFRDLFPKTTKVKCLSDAGM 223
G + L D A+ + + A+L GCSA G+ + D+F LF + ++ AG
Sbjct: 30 GHEVTLLNAADASAENLADGYDAVLFGCSAWGMEDLEMQDDFLSLFEEFDRIGL---AGR 86
Query: 224 FLDAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQ 260
+ A SG + V +++E K L T ++
Sbjct: 87 KVAAF-ASGDQEYEHFCGAVPAIEERAKELGATIIAE 122
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,069,342
Number of Sequences: 62578
Number of extensions: 546432
Number of successful extensions: 1495
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1492
Number of HSP's gapped (non-prelim): 5
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)