BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014548
(423 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8R116|NOTUM_MOUSE Protein notum homolog OS=Mus musculus GN=Notum PE=2 SV=2
Length = 503
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 77/265 (29%), Positives = 120/265 (45%), Gaps = 19/265 (7%)
Query: 60 AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
C DG+ GY++ GS WL+ LEGG +C NC R +T R S+K
Sbjct: 106 VTCNDGSPAGYYLKESKGS--RRWLLFLEGGWYCFNRENCDSRYSTMRRLMSSKDWPHTR 163
Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSGDSQNEGAQLY-FRGQRIWLTAMQDLM 176
TGILS++ EENP ++N N V + YC +SG S Y F G I +++L+
Sbjct: 164 TGTGILSSQPEENPHWWNANMVFIPYCSSDVWSGASPKSDKNEYAFMGSLIIQEVVRELL 223
Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFLDAVDVSG 232
KG+ A LL+G SAGG +L+ D +L + + +V+ L+D+G FLD
Sbjct: 224 GKGLSGAKVLLLAGSSAGGTGVLLNVDRVAELLEELGYPSIQVRGLADSGWFLDNKQYRR 283
Query: 233 GHTLRNMFAGVV-----SLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMFLLN 284
+ + ++ +P C Q + +CFF + ++ P+F++
Sbjct: 284 SDCIDTINCAPTDAIRRGIRYWSGMVPERCQRQFKEGEEWNCFFGYKVYPTLRCPVFVVQ 343
Query: 285 AAYDAWQVQASLAPPTADP--HGYW 307
+D Q+ T P G W
Sbjct: 344 WLFDEAQLTVDNVHLTGQPVQEGQW 368
>sp|Q6P988|NOTUM_HUMAN Protein notum homolog OS=Homo sapiens GN=NOTUM PE=2 SV=2
Length = 496
Score = 99.4 bits (246), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 77/262 (29%), Positives = 121/262 (46%), Gaps = 23/262 (8%)
Query: 60 AVCLDGTLPGYHIHRGSGSGANSWLIHLEGGGWCNTIRNCVYRKTTRRG--SAKFMEKQL 117
C DG+ GY++ GS WL+ LEGG +C NC R T R S++ +
Sbjct: 99 VTCNDGSPAGYYLKESRGS--RRWLLFLEGGWYCFNRENCDSRYDTMRRLMSSRDWPRTR 156
Query: 118 PFTGILSNKAEENPDFFNWNRVKLRYCDGASFSG-DSQNEGAQLYFRGQRIWLTAMQDLM 176
TGILS++ EENP ++N N V + YC +SG S++E + F G I +++L+
Sbjct: 157 TGTGILSSQPEENPYWWNANMVFIPYCSSDVWSGASSKSEKNEYAFMGALIIQEVVRELL 216
Query: 177 AKGMQNADQALLSGCSAGGLASILHCDEFRDLFPK----TTKVKCLSDAGMFL------- 225
+G+ A LL+G SAGG +L+ D + K +V+ L+D+G FL
Sbjct: 217 GRGLSGAKVLLLAGSSAGGTGVLLNVDRVAEQLEKLGYPAIQVRGLADSGWFLDNKQYRH 276
Query: 226 -DAVDVSGGHTLRNMFAGVVSLQEVQKNLPITCTSQL---DPTSCFFPQNLVANIKTPMF 281
D VD + G+ V +P C Q + +CFF + ++ P+F
Sbjct: 277 TDCVDTITCAPTEAIRRGIRYWNGV---VPERCRRQFQEGEEWNCFFGYKVYPTLRCPVF 333
Query: 282 LLNAAYDAWQVQASLAPPTADP 303
++ +D Q+ T P
Sbjct: 334 VVQWLFDEAQLTVDNVHLTGQP 355
>sp|A5D7R1|TR11B_BOVIN Tumor necrosis factor receptor superfamily member 11B OS=Bos taurus
GN=TNFRSF11B PE=2 SV=1
Length = 402
Score = 34.3 bits (77), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 362 DTWYADDSPRIGDKVCHFYHYFKQQCHKTYNRV 394
DTW+ D VC Y KQ+C +T+NRV
Sbjct: 72 DTWHTSDECLYCSPVCKELQYVKQECSRTHNRV 104
>sp|O00300|TR11B_HUMAN Tumor necrosis factor receptor superfamily member 11B OS=Homo
sapiens GN=TNFRSF11B PE=1 SV=3
Length = 401
Score = 33.1 bits (74), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 362 DTWYADDSPRIGDKVCHFYHYFKQQCHKTYNRV 394
D+W+ D VC Y KQ+C++T+NRV
Sbjct: 72 DSWHTSDECLYCSPVCKELQYVKQECNRTHNRV 104
>sp|Q8L828|COB23_ARATH Coatomer subunit beta'-3 OS=Arabidopsis thaliana GN=At3g15980 PE=2
SV=1
Length = 909
Score = 33.1 bits (74), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 287 YDAWQVQASLAPPTADPHGYWSDCKSDHAHCNSSQIQFFQDFRNQMLNAVEVFSKSN 343
++ WQV S+ TA+ G ++ ++ +H + I + FRN + A E N
Sbjct: 799 FEDWQVALSVEANTAETRGVYTAAENYPSHADKPSITLVEAFRNLQVEAEESLENGN 855
>sp|P33671|SDC3_RAT Syndecan-3 OS=Rattus norvegicus GN=Sdc3 PE=2 SV=3
Length = 442
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 16 SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
S SG+FE ET++ ++ + A AA + P M+P T+IQ D+
Sbjct: 80 SGSGYFEQESGLETAMRFIPDIALAAPTAPAMLPTTVIQPVDT 122
>sp|Q64519|SDC3_MOUSE Syndecan-3 OS=Mus musculus GN=Sdc3 PE=2 SV=2
Length = 442
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 16 SASGFFEDLDARETSLSYLENDA-AATSEPLMVPLTLIQGADS 57
S SG+FE ET++ ++ + A AA + P M+P T+IQ D+
Sbjct: 80 SGSGYFEQESGLETAMRFIPDMALAAPTAPAMLPTTVIQPVDT 122
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.437
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 160,360,199
Number of Sequences: 539616
Number of extensions: 6745581
Number of successful extensions: 17244
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 17229
Number of HSP's gapped (non-prelim): 8
length of query: 423
length of database: 191,569,459
effective HSP length: 120
effective length of query: 303
effective length of database: 126,815,539
effective search space: 38425108317
effective search space used: 38425108317
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)