BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014549
(423 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3APQ|A Chain A, Crystal Structure Of J-Trx1 Fragment Of Erdj5
pdb|3APQ|B Chain B, Crystal Structure Of J-Trx1 Fragment Of Erdj5
Length = 210
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
Y LG+ +S ++++A++K + K + ++ P+ DFLKI AYE+L D ++
Sbjct: 5 YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 63
Query: 96 YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
YD YG + + + QY SY R D + D + + +F + + +
Sbjct: 64 YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 116
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
W + YS G C + W+ A ++G+ G V GD R+ + +F FR
Sbjct: 117 WFVNFYSPGCSHCHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 176
Query: 215 RGLPSL 220
G+ ++
Sbjct: 177 SGMAAV 182
>pdb|3APO|A Chain A, Crystal Structure Of Full-Length Erdj5
Length = 780
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 85/186 (45%), Gaps = 13/186 (6%)
Query: 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRN 95
Y LG+ +S ++++A++K + K + ++ P+ DFLKI AYE+L D ++
Sbjct: 24 YSLLGVSKTASSREIRQAFKKLALKLHP-DKNPNNPNAHGDFLKINRAYEVLKDEDLRKK 82
Query: 96 YDVYGIDEQLHILEKVREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKP 155
YD YG + + + QY SY R D + D + + +F + + +
Sbjct: 83 YDKYG---EKGLEDNQGGQYESWSYYRYDFGIYDDDPEII----TLERREFDAAVNSGEL 135
Query: 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF-FR 214
W + YS GS + W+ A ++G+ G V GD R+ + +F FR
Sbjct: 136 WFVNFYSPGSSHSHDLAPTWREFAKEVDGLLRIGAVNCGDDRMLCRMKGVNSYPSLFIFR 195
Query: 215 RGLPSL 220
G+ ++
Sbjct: 196 SGMAAV 201
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 21/84 (25%), Positives = 34/84 (40%)
Query: 111 VREQYGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQ 170
+ E G S +I + D + SV + T + + W++ YS S+
Sbjct: 521 IHEYEGHHSAEQILEFIEDLRNPSVVSLTPSTFNELVKQRKHDEVWMVDFYSPWSHPSQV 580
Query: 171 FSGAWKTIAALLEGIANTGMVELG 194
WK +A L G+ N G V+ G
Sbjct: 581 LMPEWKRMARTLTGLINVGSVDCG 604
>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From
Saccharomyces Cerevisiae
Length = 92
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 38/63 (60%)
Query: 40 YDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVY 99
YD LG+ P ++ +++K+ Y K + K++ + T F +I A+E+L DP + YD Y
Sbjct: 11 YDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQY 70
Query: 100 GID 102
G++
Sbjct: 71 GLE 73
>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain
From Homo Sapiens
Length = 71
Score = 46.2 bits (108), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/63 (34%), Positives = 38/63 (60%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD 97
++YD LG+KP ++ E++K+AY K + K++ + F +I AYE+L+D + YD
Sbjct: 7 TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66
Query: 98 VYG 100
G
Sbjct: 67 KGG 69
>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans
Length = 73
Score = 44.7 bits (104), Expect = 1e-04, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 37/62 (59%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDV 98
+YD LG+KP +S ++K+AY K + K++ + F +I AYE+L+D ++ YD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQ 69
Query: 99 YG 100
G
Sbjct: 70 GG 71
>pdb|2CUG|A Chain A, Solution Structure Of The J Domain Of The Pseudo Dnaj
Protein, Mouse Hypothetical Mkiaa0962
Length = 88
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 23 GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWN-SGEEIPSTAD-FLKI 80
G+ L L F P Y LG+ +S +K+AY+K + +W+ + P D F++I
Sbjct: 7 GILQSLSAL--DFDP--YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQI 62
Query: 81 QYAYELLTDPLWKRNYDVYG 100
AYE+L++ + NYD YG
Sbjct: 63 SKAYEILSNEEKRTNYDHYG 82
>pdb|1XBL|A Chain A, Nmr Structure Of The J-Domain (Residues 2-76) In The
Escherichia Coli N-Terminal Fragment (Residues 2-108) Of
The Molecular Chaperone Dnaj, 20 Structures
Length = 107
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
+Y+ LG+ + ++++AY++ + K+ N G++ + A F +I+ AYE+LTD +
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 NYDVYG 100
YD YG
Sbjct: 64 AYDQYG 69
>pdb|1BQ0|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-104) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 103
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
+Y+ LG+ + ++++AY++ + K+ N G++ + A F +I+ AYE+LTD +
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 NYDVYG 100
YD YG
Sbjct: 64 AYDQYG 69
>pdb|1BQZ|A Chain A, J-Domain (Residues 1-77) Of The Escherichia Coli
N-Terminal Fragment (Residues 1-78) Of The Molecular
Chaperone Dnaj, Nmr, 20 Structures
Length = 77
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 21/66 (31%), Positives = 40/66 (60%), Gaps = 5/66 (7%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
+Y+ LG+ + ++++AY++ + K+ N G++ + A F +I+ AYE+LTD +
Sbjct: 5 YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDK-EAEAKFKEIKEAYEVLTDSQKRA 63
Query: 95 NYDVYG 100
YD YG
Sbjct: 64 AYDQYG 69
>pdb|2CTW|A Chain A, Solution Structure Of J-Domain From Mouse Dnaj Subfamily C
Menber 5
Length = 109
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 45/85 (52%), Gaps = 8/85 (9%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTAD-FLKIQYAYELLTDPLWKR 94
S Y LG+ ++ + +K++Y K + K+ + + P AD F +I A+ +LTD +
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77
Query: 95 NYDVYGIDEQLHILEKVREQYGEES 119
YD YG + V EQ+GEE+
Sbjct: 78 IYDKYG-----SLGLYVAEQFGEEN 97
>pdb|2CTR|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 9
Length = 88
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
+YD LG+ +S Q+K+A+ K + K+ + + + A F +I AYE L+D ++ Y
Sbjct: 9 YYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEY 68
Query: 97 DVYG 100
D G
Sbjct: 69 DTLG 72
>pdb|2DMX|A Chain A, Solution Structure Of The J Domain Of Dnaj Homolog
Subfamily B Member 8
Length = 92
Score = 37.4 bits (85), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWK 93
++Y+ LG++ +S E +K+AY K + +W N + + F + AYE+L+D +
Sbjct: 10 NYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKR 69
Query: 94 RNYDVYGID 102
YD G D
Sbjct: 70 SLYDRAGCD 78
>pdb|2DN9|A Chain A, Solution Structure Of J-Domain From The Dnaj Homolog,
Human Tid1 Protein
Length = 79
Score = 37.0 bits (84), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 46/81 (56%), Gaps = 17/81 (20%)
Query: 23 GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTAD-FLK 79
G +YQ++ +PR+ +S +++K+AY + + K+ ++ ++ P + F +
Sbjct: 7 GDYYQILGVPRN--------------ASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQ 52
Query: 80 IQYAYELLTDPLWKRNYDVYG 100
+ AYE+L+D + ++ YD YG
Sbjct: 53 LAEAYEVLSDEVKRKQYDAYG 73
>pdb|1HDJ|A Chain A, Human Hsp40 (Hdj-1), Nmr
Length = 77
Score = 36.6 bits (83), Expect = 0.029, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
+Y LG+ +S E++K AY + + ++ + +E + F +I AY++L+DP + +
Sbjct: 5 YYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIF 64
Query: 97 DVYG 100
D YG
Sbjct: 65 DRYG 68
>pdb|2Y4T|A Chain A, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|B Chain B, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
pdb|2Y4T|C Chain C, Crystal Structure Of The Human Co-Chaperone P58(Ipk)
Length = 450
Score = 35.0 bits (79), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 23 GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW------NSGEEIPSTAD 76
GL +L +S +Y LG+K + +++ +AY K + +W N E+ +
Sbjct: 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKK 427
Query: 77 FLKIQYAYELLTDPLWKRNYD 97
F+ I A E+L+DP ++ +D
Sbjct: 428 FIDIAAAKEVLSDPEMRKKFD 448
>pdb|2EJ7|A Chain A, Solution Structure Of The Dnaj Domain Of The Human Protein
Hcg3, A Hypothetical Protein Tmp_locus_21
Length = 82
Score = 35.0 bits (79), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 35/66 (53%), Gaps = 4/66 (6%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW----NSGEEIPSTADFLKIQYAYELLTDPLWKR 94
+Y+ L + +S E +K+AY K + KW N + + F ++ AYE+L+D +
Sbjct: 11 YYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRD 70
Query: 95 NYDVYG 100
YD YG
Sbjct: 71 IYDRYG 76
>pdb|2Y4U|A Chain A, Crystal Structure Of Human P58(Ipk) In Space Group P312
Length = 450
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 23 GLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKW------NSGEEIPSTAD 76
GL +L +S +Y LG+K + +++ +AY K + +W N E+ +
Sbjct: 368 GLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKK 427
Query: 77 FLKIQYAYELLTDPLWKRNYD 97
F+ I A E+L+DP ++ +D
Sbjct: 428 FIDIAAAKEVLSDPEXRKKFD 448
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 46/99 (46%), Gaps = 21/99 (21%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLT------- 88
+Y LG++P ++ +K AY + + K+ + +E + A F + A+E+L
Sbjct: 29 DYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAE 88
Query: 89 -DPLWK-RNYDVYGIDEQLHILEKVREQYGEESYSRIDL 125
D LW+ RN +G Q H E+SYS+ D
Sbjct: 89 YDQLWQHRNDPGFGRQRQTH----------EQSYSQQDF 117
>pdb|2CTP|A Chain A, Solution Structure Of J-Domain From Human Dnaj Subfamily B
Menber 12
Length = 78
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 39 HYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96
+Y+ LG+ +S E +K+AY + + K+ + +T F I AY +L++P ++ Y
Sbjct: 9 YYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQY 68
Query: 97 DVYG 100
D +G
Sbjct: 69 DQFG 72
>pdb|2KQX|A Chain A, Nmr Structure Of The J-Domain (Residues 2-72) In The
Escherichia Coli Cbpa
Length = 73
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKW--NSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
+Y +G+KP ++ +K AY + + K+ + +E + A F ++ A+E+L+D +
Sbjct: 6 DYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAE 65
Query: 96 YD 97
YD
Sbjct: 66 YD 67
>pdb|2LGW|A Chain A, Solution Structure Of The J Domain Of Hsj1a
Length = 99
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQY-----AYELLTDPLW 92
S+Y+ L + +S + +K+AY + + +W+ ++ P +F + ++ AYE+L+D
Sbjct: 3 SYYEILDVPRSASADDIKKAYRRKALQWHP-DKNPDNKEFAEKKFKEVAEAYEVLSDKHK 61
Query: 93 KRNYDVYG 100
+ YD YG
Sbjct: 62 REIYDRYG 69
>pdb|3HBU|P Chain P, Prtc Methionine Mutants: M226h Desy
Length = 462
Score = 32.7 bits (73), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 184 EYNAGEGDPSYNDAVYAEDSYQFSIHSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 243
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 244 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 291
>pdb|3HBV|P Chain P, Prtc Methionine Mutants: M226a In-House
pdb|3HDA|P Chain P, Prtc Methionine Mutants: M226a_desy
Length = 462
Score = 32.3 bits (72), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 184 EYNAGEGDPSYNDAVYAEDSYQFSIASYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 243
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 244 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 291
>pdb|1K7I|A Chain A, Prtc From Erwinia Chrysanthemi: Y228f Mutant
Length = 479
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 201 EYNAGEGDPSYNDAVYAEDSYQFSIMSFWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 260
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 261 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 308
>pdb|1GO7|P Chain P, The Metzincin's Methionine: Prtc M226c-E189k Double Mutant
Length = 462
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 184 EYNAGEGDPSYNDAVYAEDSYQFSICSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 243
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 244 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 291
>pdb|3HB2|P Chain P, Prtc Methionine Mutants: M226i
Length = 462
Score = 31.6 bits (70), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 184 EYNAGEGDPSYNDAVYAEDSYQFSIISYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 243
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 244 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 291
>pdb|1K7Q|A Chain A, Prtc From Erwinia Chrysanthemi: E189a Mutant
Length = 479
Score = 31.6 bits (70), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 201 EYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 260
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 261 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 308
>pdb|1K7G|A Chain A, Prtc From Erwinia Chrysanthemi
Length = 479
Score = 31.6 bits (70), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 201 EYNAGEGDPSYNDAVYAEDSYQFSIMSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 260
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 261 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 308
>pdb|1GO8|P Chain P, The Metzincin's Methionine: Prtc M226l Mutant
Length = 462
Score = 31.6 bits (70), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 47/116 (40%), Gaps = 14/116 (12%)
Query: 64 KWNSGEEIPSTADFLKIQYAYELLTDPLWKRN-----YDV-YGIDEQLHILEKVREQYGE 117
++N+GE PS D + + +Y+ W N Y+ YG + + ++ YG
Sbjct: 184 EYNAGEGDPSYNDAVYAEDSYQFSILSYWGENETGADYNGHYGGAPMIDDIAAIQRLYGA 243
Query: 118 ESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSG 173
+R T SV+ FN T DF + SK + V+ G FSG
Sbjct: 244 NMTTR--------TGDSVYGFNSNTDRDFYTATDSSKALIFSVWDAGGTDTFDFSG 291
>pdb|3FNR|A Chain A, Crystal Structure Of Putative Arginyl T-Rna Synthetase
From Campylobacter Jejuni
Length = 464
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 51 VEQVKEAYEKFSSKWNSGEEIPSTADFLK 79
V+ KEA+EKF ++ S E IPS AD+ K
Sbjct: 116 VDLAKEAFEKFGKEFFSEENIPSLADWAK 144
>pdb|2YUA|A Chain A, Solution Structure Of The Dnaj Domain From Human
Williams- Beuren Syndrome Chromosome Region 18 Protein
Length = 99
Score = 30.0 bits (66), Expect = 2.9, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 40 YDALGIKPYSSVEQVKEAYEK----FSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRN 95
YD LG+ ++ Q+K AY + + NSG + F +I AY +L +R
Sbjct: 20 YDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSA-EAAERFTRISQAYVVLGSATLRRK 78
Query: 96 YD 97
YD
Sbjct: 79 YD 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,054,085
Number of Sequences: 62578
Number of extensions: 554565
Number of successful extensions: 1402
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 32
length of query: 423
length of database: 14,973,337
effective HSP length: 101
effective length of query: 322
effective length of database: 8,652,959
effective search space: 2786252798
effective search space used: 2786252798
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)