Query 014549
Match_columns 423
No_of_seqs 282 out of 3436
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 06:14:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014549.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014549hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0190 Protein disulfide isom 100.0 7.4E-31 1.6E-35 263.0 19.8 251 135-419 24-280 (493)
2 KOG4277 Uncharacterized conser 99.9 1.5E-24 3.2E-29 200.4 16.3 223 151-415 41-276 (468)
3 KOG0713 Molecular chaperone (D 99.9 1.8E-25 3.9E-30 211.5 6.7 142 33-187 12-159 (336)
4 TIGR01130 ER_PDI_fam protein d 99.9 4E-23 8.7E-28 212.7 20.2 222 138-380 3-231 (462)
5 cd03006 PDI_a_EFP1_N PDIa fami 99.9 2.1E-23 4.6E-28 173.3 9.0 107 126-249 3-113 (113)
6 PTZ00102 disulphide isomerase; 99.9 5.4E-22 1.2E-26 205.6 19.7 211 137-380 33-246 (477)
7 KOG0912 Thiol-disulfide isomer 99.9 2.8E-21 6.1E-26 179.2 17.2 216 141-380 1-224 (375)
8 COG0484 DnaJ DnaJ-class molecu 99.9 1.3E-22 2.8E-27 197.2 7.5 71 35-105 2-75 (371)
9 cd03003 PDI_a_ERdj5_N PDIa fam 99.9 4.9E-22 1.1E-26 162.2 8.4 99 138-249 3-101 (101)
10 KOG0191 Thioredoxin/protein di 99.9 1E-20 2.2E-25 190.7 16.9 210 139-366 32-254 (383)
11 cd03007 PDI_a_ERp29_N PDIa fam 99.8 2.7E-21 5.9E-26 160.0 7.8 103 138-252 3-115 (116)
12 cd02996 PDI_a_ERp44 PDIa famil 99.8 5.2E-21 1.1E-25 158.1 8.0 101 137-249 2-108 (108)
13 cd03004 PDI_a_ERdj5_C PDIa fam 99.8 5.7E-21 1.2E-25 156.6 8.0 101 137-249 2-104 (104)
14 PF00085 Thioredoxin: Thioredo 99.8 5.3E-20 1.1E-24 149.9 8.7 102 138-252 1-103 (103)
15 cd02994 PDI_a_TMX PDIa family, 99.8 1.1E-19 2.3E-24 148.3 8.3 98 137-250 2-100 (101)
16 KOG0712 Molecular chaperone (D 99.8 6.4E-20 1.4E-24 176.1 6.7 69 36-104 3-71 (337)
17 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.9E-19 4.2E-24 148.6 8.3 105 138-249 2-108 (109)
18 cd03065 PDI_b_Calsequestrin_N 99.8 2.9E-19 6.3E-24 149.6 9.4 110 125-252 2-118 (120)
19 cd02993 PDI_a_APS_reductase PD 99.8 4.2E-19 9.1E-24 147.1 7.6 102 137-249 2-109 (109)
20 cd03001 PDI_a_P5 PDIa family, 99.8 1.1E-18 2.4E-23 142.4 8.8 100 138-249 2-102 (103)
21 cd03005 PDI_a_ERp46 PDIa famil 99.8 9.9E-19 2.2E-23 142.4 6.9 98 138-249 2-102 (102)
22 PTZ00443 Thioredoxin domain-co 99.8 1.2E-18 2.7E-23 161.3 7.7 105 135-252 29-138 (224)
23 KOG1731 FAD-dependent sulfhydr 99.8 3.3E-18 7.1E-23 171.5 11.1 224 137-374 40-286 (606)
24 cd02995 PDI_a_PDI_a'_C PDIa fa 99.8 3E-18 6.5E-23 139.9 8.6 100 138-249 2-104 (104)
25 cd02963 TRX_DnaJ TRX domain, D 99.7 3.3E-18 7.2E-23 142.2 7.4 100 139-251 7-110 (111)
26 PRK14288 chaperone protein Dna 99.7 2.2E-18 4.8E-23 172.0 6.7 68 36-103 2-72 (369)
27 PRK14296 chaperone protein Dna 99.7 3.9E-18 8.3E-23 170.3 7.0 68 36-103 3-72 (372)
28 KOG0910 Thioredoxin-like prote 99.7 5.8E-18 1.3E-22 143.9 6.6 103 137-252 44-147 (150)
29 KOG0190 Protein disulfide isom 99.7 7E-18 1.5E-22 169.9 7.9 104 136-252 366-472 (493)
30 cd02997 PDI_a_PDIR PDIa family 99.7 1.3E-17 2.8E-22 136.2 7.4 101 138-249 2-104 (104)
31 cd02956 ybbN ybbN protein fami 99.7 2.4E-17 5.2E-22 133.0 8.3 92 145-249 2-95 (96)
32 PF01216 Calsequestrin: Calseq 99.7 8.9E-16 1.9E-20 145.8 20.0 228 123-379 25-262 (383)
33 TIGR01126 pdi_dom protein disu 99.7 2.5E-17 5.4E-22 133.8 8.3 99 141-252 1-101 (102)
34 cd02998 PDI_a_ERp38 PDIa famil 99.7 2.8E-17 6E-22 134.3 8.4 101 138-249 2-105 (105)
35 cd02999 PDI_a_ERp44_like PDIa 99.7 3.5E-17 7.6E-22 133.4 8.0 84 151-249 16-100 (100)
36 COG3118 Thioredoxin domain-con 99.7 2.5E-17 5.4E-22 154.4 8.1 103 137-252 24-129 (304)
37 cd02992 PDI_a_QSOX PDIa family 99.7 5.6E-17 1.2E-21 135.4 9.1 103 138-247 3-110 (114)
38 PTZ00037 DnaJ_C chaperone prot 99.7 1.6E-17 3.5E-22 167.6 6.6 68 35-103 26-93 (421)
39 KOG0721 Molecular chaperone (D 99.7 4.8E-17 1E-21 144.8 8.6 92 13-104 69-169 (230)
40 TIGR00424 APS_reduc 5'-adenyly 99.7 3.9E-17 8.5E-22 165.5 9.0 107 135-251 350-461 (463)
41 PRK14286 chaperone protein Dna 99.7 2.2E-17 4.7E-22 165.0 6.8 68 36-103 3-73 (372)
42 PRK09381 trxA thioredoxin; Pro 99.7 7.5E-17 1.6E-21 133.3 8.8 103 137-252 4-107 (109)
43 PRK14279 chaperone protein Dna 99.7 2.1E-17 4.5E-22 166.2 6.2 67 36-102 8-77 (392)
44 PRK14287 chaperone protein Dna 99.7 3.9E-17 8.4E-22 163.2 6.9 68 36-103 3-72 (371)
45 TIGR02187 GlrX_arch Glutaredox 99.7 1.5E-15 3.4E-20 141.0 17.1 195 145-362 12-214 (215)
46 cd03000 PDI_a_TMX3 PDIa family 99.7 2.1E-16 4.5E-21 129.7 8.9 94 144-252 7-103 (104)
47 PHA02278 thioredoxin-like prot 99.7 7.6E-17 1.6E-21 131.8 6.3 95 144-248 5-100 (103)
48 PRK14298 chaperone protein Dna 99.7 5.8E-17 1.3E-21 162.1 6.7 68 36-103 4-73 (377)
49 cd02961 PDI_a_family Protein D 99.7 1E-16 2.2E-21 129.1 6.9 98 140-249 2-101 (101)
50 PRK14276 chaperone protein Dna 99.7 6.6E-17 1.4E-21 162.1 6.9 68 36-103 3-72 (380)
51 PRK14283 chaperone protein Dna 99.7 7E-17 1.5E-21 161.9 6.7 68 36-103 4-73 (378)
52 PLN02309 5'-adenylylsulfate re 99.7 1.4E-16 3.1E-21 161.4 8.7 107 134-252 343-456 (457)
53 PRK10996 thioredoxin 2; Provis 99.7 1.9E-16 4.1E-21 136.9 8.2 102 138-252 37-138 (139)
54 PRK14282 chaperone protein Dna 99.7 9.8E-17 2.1E-21 160.4 7.2 68 36-103 3-74 (369)
55 PRK14285 chaperone protein Dna 99.7 8.5E-17 1.8E-21 160.4 6.6 68 36-103 2-72 (365)
56 PRK14280 chaperone protein Dna 99.7 1.1E-16 2.4E-21 160.3 7.2 68 36-103 3-72 (376)
57 PRK14299 chaperone protein Dna 99.7 1.2E-16 2.7E-21 154.6 7.1 68 36-103 3-72 (291)
58 PRK14291 chaperone protein Dna 99.7 1.3E-16 2.8E-21 160.2 7.0 68 36-103 2-71 (382)
59 PRK14294 chaperone protein Dna 99.6 1.4E-16 3E-21 159.1 6.9 68 36-103 3-73 (366)
60 KOG0716 Molecular chaperone (D 99.6 1.1E-16 2.4E-21 147.2 5.6 70 36-105 30-102 (279)
61 PRK14278 chaperone protein Dna 99.6 1.5E-16 3.2E-21 159.4 7.0 66 37-102 3-70 (378)
62 KOG0717 Molecular chaperone (D 99.6 5.3E-17 1.1E-21 158.6 3.6 70 33-102 4-77 (508)
63 PRK14277 chaperone protein Dna 99.6 1.6E-16 3.5E-21 159.7 6.7 68 36-103 4-74 (386)
64 PRK14301 chaperone protein Dna 99.6 1.5E-16 3.3E-21 159.0 6.4 68 36-103 3-73 (373)
65 PRK14297 chaperone protein Dna 99.6 1.6E-16 3.5E-21 159.4 6.4 68 36-103 3-73 (380)
66 cd02985 TRX_CDSP32 TRX family, 99.6 3.6E-16 7.7E-21 128.1 6.8 96 143-250 3-100 (103)
67 PRK14284 chaperone protein Dna 99.6 2.3E-16 5.1E-21 158.7 6.6 67 37-103 1-70 (391)
68 PF00226 DnaJ: DnaJ domain; I 99.6 3.5E-16 7.6E-21 116.7 5.4 60 38-97 1-64 (64)
69 PRK14295 chaperone protein Dna 99.6 3.6E-16 7.8E-21 157.0 6.7 68 36-103 8-82 (389)
70 PRK14281 chaperone protein Dna 99.6 4E-16 8.8E-21 157.2 6.5 67 37-103 3-72 (397)
71 PRK10767 chaperone protein Dna 99.6 4.7E-16 1E-20 155.8 6.8 68 36-103 3-73 (371)
72 cd02954 DIM1 Dim1 family; Dim1 99.6 3.1E-16 6.6E-21 129.5 4.2 76 144-228 3-80 (114)
73 KOG0715 Molecular chaperone (D 99.6 6E-16 1.3E-20 148.7 6.7 68 36-103 42-111 (288)
74 cd02965 HyaE HyaE family; HyaE 99.6 1.5E-15 3.4E-20 124.5 7.7 96 138-246 12-109 (111)
75 cd02962 TMX2 TMX2 family; comp 99.6 1.2E-15 2.6E-20 133.2 6.8 90 136-228 28-120 (152)
76 KOG0719 Molecular chaperone (D 99.6 8.8E-16 1.9E-20 137.8 5.6 70 34-103 11-85 (264)
77 PRK14290 chaperone protein Dna 99.6 1E-15 2.2E-20 152.8 6.6 67 37-103 3-73 (365)
78 PTZ00341 Ring-infected erythro 99.6 5.7E-16 1.2E-20 163.8 5.0 70 35-104 571-642 (1136)
79 PRK14300 chaperone protein Dna 99.6 1.1E-15 2.3E-20 153.0 6.6 67 37-103 3-71 (372)
80 KOG0624 dsRNA-activated protei 99.6 1.3E-15 2.8E-20 144.4 6.5 71 33-104 390-466 (504)
81 cd02948 TRX_NDPK TRX domain, T 99.6 2E-15 4.3E-20 123.5 6.8 96 141-251 5-101 (102)
82 KOG0691 Molecular chaperone (D 99.6 1.2E-15 2.5E-20 145.4 5.9 69 36-104 4-75 (296)
83 TIGR01068 thioredoxin thioredo 99.6 3E-15 6.5E-20 121.1 7.3 98 142-252 2-100 (101)
84 TIGR02349 DnaJ_bact chaperone 99.6 1.4E-15 3.1E-20 151.5 6.6 66 38-103 1-68 (354)
85 KOG0718 Molecular chaperone (D 99.6 1.1E-15 2.4E-20 149.4 5.4 70 36-105 8-83 (546)
86 PRK14293 chaperone protein Dna 99.6 1.7E-15 3.8E-20 151.6 7.0 68 36-103 2-71 (374)
87 PRK14289 chaperone protein Dna 99.6 1.7E-15 3.7E-20 152.4 6.6 68 36-103 4-74 (386)
88 cd02957 Phd_like Phosducin (Ph 99.6 2.4E-15 5.2E-20 125.3 6.0 82 136-228 4-88 (113)
89 PRK14292 chaperone protein Dna 99.6 2E-15 4.4E-20 151.2 6.4 67 37-103 2-70 (371)
90 PRK10266 curved DNA-binding pr 99.6 3.3E-15 7.2E-20 145.8 6.7 66 37-102 4-71 (306)
91 cd02953 DsbDgamma DsbD gamma f 99.6 8.8E-15 1.9E-19 119.9 7.5 96 144-249 2-103 (104)
92 PTZ00102 disulphide isomerase; 99.6 8.9E-15 1.9E-19 151.7 9.1 106 135-252 356-464 (477)
93 cd02989 Phd_like_TxnDC9 Phosdu 99.5 1.6E-14 3.4E-19 120.4 6.7 81 138-228 6-87 (113)
94 KOG0722 Molecular chaperone (D 99.5 1.8E-14 3.8E-19 130.8 6.5 87 13-99 9-97 (329)
95 cd02950 TxlA TRX-like protein 99.5 6E-14 1.3E-18 121.7 9.4 101 143-254 10-111 (142)
96 KOG0191 Thioredoxin/protein di 99.5 3.6E-14 7.8E-19 143.1 9.0 105 137-253 145-252 (383)
97 smart00271 DnaJ DnaJ molecular 99.5 2.8E-14 6.1E-19 104.8 5.9 55 37-91 1-59 (60)
98 cd06257 DnaJ DnaJ domain or J- 99.5 3.5E-14 7.6E-19 102.4 5.9 52 38-89 1-55 (55)
99 cd02984 TRX_PICOT TRX domain, 99.5 3.2E-14 6.9E-19 114.8 6.1 93 143-249 2-96 (97)
100 PHA03102 Small T antigen; Revi 99.5 2E-14 4.4E-19 124.2 4.9 68 37-105 5-74 (153)
101 TIGR01130 ER_PDI_fam protein d 99.5 1.1E-13 2.3E-18 142.7 9.1 105 135-252 345-453 (462)
102 KOG0907 Thioredoxin [Posttrans 99.5 1.3E-13 2.8E-18 112.9 7.6 85 151-250 19-103 (106)
103 cd02947 TRX_family TRX family; 99.5 1.8E-13 3.9E-18 107.9 7.9 91 145-249 2-92 (93)
104 PTZ00051 thioredoxin; Provisio 99.5 7.6E-14 1.7E-18 112.8 5.7 92 139-245 3-95 (98)
105 cd02949 TRX_NTR TRX domain, no 99.4 2.8E-13 6.1E-18 109.5 8.2 86 151-249 11-96 (97)
106 PLN00410 U5 snRNP protein, DIM 99.4 1.7E-13 3.6E-18 117.6 6.9 98 143-252 11-119 (142)
107 TIGR03835 termin_org_DnaJ term 99.4 1.5E-13 3.3E-18 142.6 7.0 67 37-103 2-70 (871)
108 cd02975 PfPDO_like_N Pyrococcu 99.4 1.1E-12 2.4E-17 109.3 7.9 95 146-252 15-109 (113)
109 cd02987 Phd_like_Phd Phosducin 99.4 7.8E-13 1.7E-17 118.6 7.3 103 137-251 63-173 (175)
110 cd02986 DLP Dim1 family, Dim1- 99.4 6E-13 1.3E-17 109.2 5.2 77 144-229 3-81 (114)
111 TIGR01295 PedC_BrcD bacterioci 99.4 1.2E-12 2.7E-17 110.4 7.2 105 137-249 7-120 (122)
112 cd02982 PDI_b'_family Protein 99.4 2E-12 4.4E-17 105.3 8.3 87 152-252 11-102 (103)
113 COG2214 CbpA DnaJ-class molecu 99.3 1.6E-12 3.6E-17 120.4 6.3 65 36-100 5-73 (237)
114 TIGR00411 redox_disulf_1 small 99.3 1.6E-11 3.4E-16 95.7 8.9 80 156-252 2-81 (82)
115 cd02988 Phd_like_VIAF Phosduci 99.3 8.2E-12 1.8E-16 113.5 7.7 98 137-251 83-190 (192)
116 KOG0908 Thioredoxin-like prote 99.3 7.6E-12 1.6E-16 114.0 7.2 102 138-254 3-107 (288)
117 KOG0720 Molecular chaperone (D 99.3 4.1E-12 9E-17 124.7 5.5 65 36-100 234-300 (490)
118 cd02951 SoxW SoxW family; SoxW 99.3 1.3E-11 2.8E-16 104.5 7.2 97 147-252 7-118 (125)
119 PRK01356 hscB co-chaperone Hsc 99.2 1.1E-11 2.3E-16 109.8 6.7 62 37-98 2-71 (166)
120 PRK05014 hscB co-chaperone Hsc 99.2 1.5E-11 3.3E-16 109.5 6.7 62 37-98 1-72 (171)
121 PTZ00062 glutaredoxin; Provisi 99.2 2E-10 4.4E-15 104.9 12.6 162 143-336 6-174 (204)
122 PRK00294 hscB co-chaperone Hsc 99.2 3.4E-11 7.4E-16 107.1 7.3 65 34-98 1-75 (173)
123 PRK03578 hscB co-chaperone Hsc 99.2 3.5E-11 7.7E-16 107.4 7.2 65 34-98 3-77 (176)
124 COG5407 SEC63 Preprotein trans 99.2 2.5E-11 5.4E-16 118.5 6.4 68 36-103 97-172 (610)
125 PTZ00100 DnaJ chaperone protei 99.2 2.5E-11 5.4E-16 99.6 5.1 52 36-88 64-115 (116)
126 cd02952 TRP14_like Human TRX-r 99.2 2.5E-11 5.3E-16 101.5 4.6 79 144-228 10-102 (119)
127 PF13848 Thioredoxin_6: Thiore 99.1 6.4E-09 1.4E-13 93.5 17.1 170 170-362 7-184 (184)
128 KOG0714 Molecular chaperone (D 99.1 1.1E-10 2.4E-15 113.0 4.3 68 36-103 2-73 (306)
129 KOG0550 Molecular chaperone (D 99.0 1.3E-10 2.9E-15 113.1 3.7 69 31-99 367-439 (486)
130 TIGR00412 redox_disulf_2 small 99.0 7.2E-10 1.6E-14 85.4 7.0 72 158-249 3-75 (76)
131 PHA02624 large T antigen; Prov 99.0 1.9E-10 4E-15 118.7 4.7 63 33-96 7-71 (647)
132 PHA02125 thioredoxin-like prot 99.0 9.3E-10 2E-14 84.6 6.5 69 157-247 2-71 (75)
133 PRK09430 djlA Dna-J like membr 99.0 3.8E-10 8.2E-15 107.8 4.7 54 36-89 199-262 (267)
134 TIGR02187 GlrX_arch Glutaredox 99.0 2.2E-09 4.8E-14 99.7 9.7 81 154-251 134-214 (215)
135 PRK00293 dipZ thiol:disulfide 99.0 1.4E-09 3E-14 114.9 8.4 101 143-252 460-569 (571)
136 cd02959 ERp19 Endoplasmic reti 98.9 1E-09 2.2E-14 92.0 5.6 91 151-250 17-110 (117)
137 KOG0913 Thiol-disulfide isomer 98.9 3.9E-10 8.5E-15 102.2 3.0 102 135-252 23-125 (248)
138 PF13098 Thioredoxin_2: Thiore 98.9 1.9E-09 4.2E-14 89.1 5.7 89 151-249 3-112 (112)
139 PRK03147 thiol-disulfide oxido 98.8 2E-08 4.3E-13 89.6 9.5 92 152-252 60-171 (173)
140 KOG1150 Predicted molecular ch 98.8 4.3E-09 9.3E-14 92.7 4.8 63 35-97 51-117 (250)
141 KOG0914 Thioredoxin-like prote 98.8 5E-09 1.1E-13 93.8 3.5 85 142-229 131-218 (265)
142 cd02973 TRX_GRX_like Thioredox 98.8 2.4E-08 5.2E-13 74.7 6.6 56 157-222 3-58 (67)
143 TIGR02740 TraF-like TraF-like 98.7 3.1E-08 6.8E-13 95.0 9.0 90 152-252 165-263 (271)
144 PRK01773 hscB co-chaperone Hsc 98.7 3.4E-08 7.4E-13 87.9 6.7 62 37-98 2-73 (173)
145 cd02967 mauD Methylamine utili 98.7 7.5E-08 1.6E-12 79.7 8.1 63 152-220 20-82 (114)
146 TIGR02738 TrbB type-F conjugat 98.7 1.2E-07 2.7E-12 83.0 9.5 95 149-251 46-151 (153)
147 cd03011 TlpA_like_ScsD_MtbDsbE 98.7 7.3E-08 1.6E-12 80.9 7.7 93 141-247 8-120 (123)
148 cd03026 AhpF_NTD_C TRX-GRX-lik 98.6 1.3E-07 2.7E-12 75.2 7.9 76 153-246 12-87 (89)
149 PF13848 Thioredoxin_6: Thiore 98.6 2.7E-07 5.8E-12 82.9 11.2 111 292-419 8-120 (184)
150 PRK14018 trifunctional thiored 98.6 1.2E-07 2.6E-12 97.9 10.0 89 151-252 54-172 (521)
151 cd02955 SSP411 TRX domain, SSP 98.6 3.8E-08 8.2E-13 83.1 5.2 75 145-228 7-92 (124)
152 cd03009 TryX_like_TryX_NRX Try 98.6 1.2E-07 2.7E-12 80.6 7.9 71 152-228 17-111 (131)
153 cd03010 TlpA_like_DsbE TlpA-li 98.6 9.1E-08 2E-12 81.0 6.6 82 152-245 24-126 (127)
154 PRK11509 hydrogenase-1 operon 98.6 2.5E-07 5.5E-12 78.3 8.8 99 141-252 22-123 (132)
155 cd02964 TryX_like_family Trypa 98.6 2.1E-07 4.6E-12 79.4 8.0 70 152-227 16-110 (132)
156 COG5269 ZUO1 Ribosome-associat 98.6 6E-08 1.3E-12 89.3 4.6 68 36-103 42-117 (379)
157 TIGR00714 hscB Fe-S protein as 98.6 1.3E-07 2.8E-12 83.1 6.4 51 49-99 3-61 (157)
158 cd02966 TlpA_like_family TlpA- 98.5 2.1E-07 4.6E-12 75.9 6.8 69 153-227 19-108 (116)
159 cd03007 PDI_a_ERp29_N PDIa fam 98.5 8.2E-07 1.8E-11 73.7 10.0 98 262-363 6-115 (116)
160 TIGR00385 dsbE periplasmic pro 98.4 4.7E-07 1E-11 81.2 6.9 95 151-252 61-170 (173)
161 cd02958 UAS UAS family; UAS is 98.4 1.1E-06 2.3E-11 73.1 8.3 92 151-252 15-110 (114)
162 PF13905 Thioredoxin_8: Thiore 98.4 7.8E-07 1.7E-11 71.1 7.1 75 153-227 1-93 (95)
163 cd03008 TryX_like_RdCVF Trypar 98.4 9.8E-07 2.1E-11 76.6 7.9 77 152-228 24-124 (146)
164 PRK15412 thiol:disulfide inter 98.4 1.5E-06 3.2E-11 78.8 8.9 95 151-252 66-175 (185)
165 cd03065 PDI_b_Calsequestrin_N 98.4 4.5E-06 9.8E-11 70.0 10.6 94 262-362 14-117 (120)
166 PLN02919 haloacid dehalogenase 98.3 2.2E-06 4.7E-11 96.8 9.2 91 152-252 419-535 (1057)
167 PRK13728 conjugal transfer pro 98.3 3.6E-06 7.7E-11 75.4 8.6 86 157-252 73-170 (181)
168 PF13899 Thioredoxin_7: Thiore 98.2 1.2E-06 2.6E-11 68.3 4.5 64 151-224 15-81 (82)
169 PF00085 Thioredoxin: Thioredo 98.2 8.1E-06 1.8E-10 65.7 9.1 96 262-363 4-103 (103)
170 COG4232 Thiol:disulfide interc 98.2 1.4E-06 3E-11 89.6 5.4 99 145-252 464-567 (569)
171 cd01659 TRX_superfamily Thiore 98.1 5.9E-06 1.3E-10 59.1 6.2 63 157-226 1-63 (69)
172 cd03004 PDI_a_ERdj5_C PDIa fam 98.1 1E-05 2.2E-10 65.8 7.9 79 280-360 22-104 (104)
173 KOG1789 Endocytosis protein RM 98.1 2.5E-06 5.4E-11 91.3 5.1 53 36-88 1280-1336(2235)
174 smart00594 UAS UAS domain. 98.1 1.5E-05 3.3E-10 67.1 8.3 92 151-249 25-121 (122)
175 cd03012 TlpA_like_DipZ_like Tl 98.1 1.3E-05 2.9E-10 67.7 7.7 42 152-193 22-64 (126)
176 PF07912 ERp29_N: ERp29, N-ter 98.0 3.6E-05 7.7E-10 63.6 9.2 106 138-252 6-118 (126)
177 PLN02399 phospholipid hydroper 98.0 4.4E-05 9.6E-10 71.6 10.7 98 152-252 98-233 (236)
178 TIGR02196 GlrX_YruB Glutaredox 98.0 2E-05 4.2E-10 59.2 6.9 71 157-249 2-73 (74)
179 cd02981 PDI_b_family Protein D 98.0 3.5E-05 7.6E-10 61.7 8.5 93 263-363 5-97 (97)
180 cd03003 PDI_a_ERdj5_N PDIa fam 98.0 2.9E-05 6.3E-10 62.8 7.8 77 280-359 21-100 (101)
181 cd03002 PDI_a_MPD1_like PDI fa 98.0 3.6E-05 7.8E-10 62.9 8.4 97 262-361 5-109 (109)
182 PF13192 Thioredoxin_3: Thiore 98.0 2.2E-05 4.8E-10 60.3 6.6 73 158-250 3-76 (76)
183 TIGR02661 MauD methylamine deh 97.9 5.4E-05 1.2E-09 68.8 9.7 92 152-250 73-176 (189)
184 TIGR03143 AhpF_homolog putativ 97.9 0.00025 5.4E-09 75.2 16.2 184 153-360 366-554 (555)
185 cd03006 PDI_a_EFP1_N PDIa fami 97.9 3.9E-05 8.4E-10 63.7 7.8 78 280-360 32-113 (113)
186 cd02996 PDI_a_ERp44 PDIa famil 97.9 4.4E-05 9.5E-10 62.6 8.1 93 262-360 6-108 (108)
187 KOG0568 Molecular chaperone (D 97.9 1E-05 2.2E-10 73.1 4.5 54 36-89 46-102 (342)
188 cd02981 PDI_b_family Protein D 97.9 4.7E-05 1E-09 61.0 7.8 87 146-251 10-96 (97)
189 cd02960 AGR Anterior Gradient 97.9 2.4E-05 5.2E-10 66.3 5.8 68 151-228 21-91 (130)
190 PTZ00056 glutathione peroxidas 97.8 0.00012 2.7E-09 67.1 10.2 58 152-209 38-104 (199)
191 cd03066 PDI_b_Calsequestrin_mi 97.8 0.00013 2.9E-09 59.3 9.2 95 262-364 5-101 (102)
192 PF08534 Redoxin: Redoxin; In 97.8 7.7E-05 1.7E-09 64.5 8.0 77 152-228 27-126 (146)
193 cd03069 PDI_b_ERp57 PDIb famil 97.8 0.00012 2.6E-09 59.8 8.7 93 262-363 5-103 (104)
194 COG0526 TrxA Thiol-disulfide i 97.8 6.5E-05 1.4E-09 60.6 6.9 69 153-228 32-101 (127)
195 cd03001 PDI_a_P5 PDIa family, 97.8 0.00011 2.3E-09 59.3 8.1 79 280-360 21-102 (103)
196 TIGR01126 pdi_dom protein disu 97.8 0.00023 5E-09 57.0 9.7 81 280-363 16-101 (102)
197 cd00340 GSH_Peroxidase Glutath 97.8 0.00013 2.9E-09 63.7 8.6 41 153-194 22-63 (152)
198 PRK11509 hydrogenase-1 operon 97.7 0.00038 8.2E-09 59.1 10.8 96 268-369 27-129 (132)
199 PLN02412 probable glutathione 97.7 0.00025 5.4E-09 63.2 10.0 42 153-194 29-71 (167)
200 cd02993 PDI_a_APS_reductase PD 97.7 0.00017 3.7E-09 59.3 8.3 80 280-360 24-109 (109)
201 TIGR02200 GlrX_actino Glutared 97.7 0.00014 3E-09 55.4 6.5 72 157-249 2-75 (77)
202 TIGR02540 gpx7 putative glutat 97.7 0.00044 9.5E-09 60.5 10.5 41 153-193 22-63 (153)
203 cd02999 PDI_a_ERp44_like PDIa 97.7 0.00016 3.6E-09 58.5 7.2 77 280-360 21-100 (100)
204 KOG4277 Uncharacterized conser 97.7 0.00024 5.3E-09 67.0 9.1 109 266-376 32-144 (468)
205 PF13728 TraF: F plasmid trans 97.6 0.00021 4.6E-09 66.2 8.4 86 152-247 119-212 (215)
206 TIGR00424 APS_reduc 5'-adenyly 97.6 0.00024 5.1E-09 72.9 9.3 100 262-362 356-461 (463)
207 KOG0910 Thioredoxin-like prote 97.6 0.00025 5.5E-09 60.9 7.6 81 280-363 64-147 (150)
208 cd03005 PDI_a_ERp46 PDIa famil 97.6 0.0003 6.6E-09 56.5 7.4 77 280-360 19-102 (102)
209 cd02969 PRX_like1 Peroxiredoxi 97.6 0.00056 1.2E-08 60.9 9.8 96 152-252 24-151 (171)
210 cd02963 TRX_DnaJ TRX domain, D 97.5 0.0005 1.1E-08 56.8 8.4 80 280-362 27-110 (111)
211 PF02114 Phosducin: Phosducin; 97.5 0.00013 2.7E-09 69.8 5.3 103 138-252 127-237 (265)
212 cd02956 ybbN ybbN protein fami 97.5 0.0006 1.3E-08 54.3 8.5 79 280-361 15-96 (96)
213 cd02961 PDI_a_family Protein D 97.5 0.00052 1.1E-08 54.3 8.0 79 280-360 18-101 (101)
214 cd02998 PDI_a_ERp38 PDIa famil 97.5 0.00052 1.1E-08 55.3 8.0 67 292-360 36-105 (105)
215 cd02965 HyaE HyaE family; HyaE 97.5 0.00095 2.1E-08 55.0 9.1 84 268-357 20-109 (111)
216 cd02997 PDI_a_PDIR PDIa family 97.4 0.0009 1.9E-08 53.9 8.7 80 280-360 20-104 (104)
217 KOG0723 Molecular chaperone (D 97.4 0.00028 6.1E-09 56.4 5.3 49 41-90 60-108 (112)
218 PLN02309 5'-adenylylsulfate re 97.4 0.00059 1.3E-08 70.0 9.0 99 262-362 350-455 (457)
219 cd02995 PDI_a_PDI_a'_C PDIa fa 97.4 0.00068 1.5E-08 54.5 7.6 78 280-360 21-104 (104)
220 cd03072 PDI_b'_ERp44 PDIb' fam 97.4 0.00077 1.7E-08 55.8 8.0 101 138-252 1-107 (111)
221 COG3118 Thioredoxin domain-con 97.4 0.00057 1.2E-08 65.1 7.8 98 262-364 28-130 (304)
222 cd02994 PDI_a_TMX PDIa family, 97.4 0.0011 2.3E-08 53.4 8.4 79 280-362 19-101 (101)
223 KOG2603 Oligosaccharyltransfer 97.4 0.0014 2.9E-08 62.6 10.0 109 135-252 39-165 (331)
224 TIGR02180 GRX_euk Glutaredoxin 97.3 0.00028 6E-09 54.7 4.3 60 157-226 1-62 (84)
225 KOG0912 Thiol-disulfide isomer 97.3 0.00061 1.3E-08 64.6 7.2 124 280-413 16-146 (375)
226 cd03000 PDI_a_TMX3 PDIa family 97.3 0.0019 4.1E-08 52.4 9.0 79 279-362 17-102 (104)
227 cd03017 PRX_BCP Peroxiredoxin 97.3 0.0012 2.7E-08 56.3 8.0 55 153-207 23-79 (140)
228 PF00578 AhpC-TSA: AhpC/TSA fa 97.3 0.00062 1.4E-08 56.7 6.0 55 152-206 24-80 (124)
229 cd02982 PDI_b'_family Protein 97.2 0.00091 2E-08 53.9 6.6 82 279-362 13-101 (103)
230 cd03068 PDI_b_ERp72 PDIb famil 97.2 0.003 6.6E-08 51.8 9.2 95 262-363 5-107 (107)
231 cd03067 PDI_b_PDIR_N PDIb fami 97.2 0.0007 1.5E-08 53.8 4.9 97 143-251 9-110 (112)
232 PRK09381 trxA thioredoxin; Pro 97.2 0.0031 6.6E-08 51.5 9.0 81 280-363 24-107 (109)
233 cd02983 P5_C P5 family, C-term 97.1 0.0034 7.3E-08 53.5 9.2 107 137-253 3-115 (130)
234 cd02950 TxlA TRX-like protein 97.1 0.0029 6.2E-08 54.7 8.7 87 278-364 20-110 (142)
235 TIGR02739 TraF type-F conjugat 97.1 0.0015 3.3E-08 61.8 7.5 90 152-252 149-247 (256)
236 TIGR01068 thioredoxin thioredo 97.1 0.0049 1.1E-07 48.9 9.5 81 280-363 17-100 (101)
237 PHA02278 thioredoxin-like prot 97.1 0.0031 6.8E-08 51.4 8.4 79 280-359 17-100 (103)
238 cd02953 DsbDgamma DsbD gamma f 97.1 0.0024 5.2E-08 51.7 7.7 63 299-361 39-104 (104)
239 PTZ00443 Thioredoxin domain-co 97.1 0.0026 5.7E-08 59.2 8.7 83 279-365 54-140 (224)
240 KOG2501 Thioredoxin, nucleored 97.1 0.0016 3.4E-08 56.6 6.4 71 152-228 32-127 (157)
241 cd03073 PDI_b'_ERp72_ERp57 PDI 97.0 0.0028 6E-08 52.4 7.7 99 139-252 2-110 (111)
242 TIGR01626 ytfJ_HI0045 conserve 97.0 0.0024 5.2E-08 57.6 7.8 93 152-247 58-174 (184)
243 PRK10996 thioredoxin 2; Provis 97.0 0.0034 7.5E-08 54.0 8.6 68 293-363 71-138 (139)
244 PTZ00256 glutathione peroxidas 97.0 0.0054 1.2E-07 55.4 10.2 42 153-194 40-83 (183)
245 cd02991 UAS_ETEA UAS family, E 97.0 0.0017 3.6E-08 54.2 5.9 94 151-252 15-112 (116)
246 PRK13703 conjugal pilus assemb 97.0 0.0024 5.3E-08 60.1 7.4 89 153-252 143-240 (248)
247 PF06110 DUF953: Eukaryotic pr 97.0 0.00037 8E-09 58.1 1.7 69 151-226 17-99 (119)
248 cd02983 P5_C P5 family, C-term 96.9 0.0038 8.2E-08 53.2 7.9 103 261-368 6-119 (130)
249 cd03015 PRX_Typ2cys Peroxiredo 96.9 0.0062 1.3E-07 54.4 9.6 43 153-195 29-73 (173)
250 PF07912 ERp29_N: ERp29, N-ter 96.9 0.0064 1.4E-07 50.4 8.6 95 268-366 14-121 (126)
251 PRK00522 tpx lipid hydroperoxi 96.9 0.0025 5.3E-08 56.7 6.8 54 153-207 44-98 (167)
252 TIGR03143 AhpF_homolog putativ 96.9 0.0029 6.3E-08 67.2 8.4 79 153-249 475-554 (555)
253 KOG3425 Uncharacterized conser 96.9 0.0012 2.5E-08 54.2 4.1 80 145-225 14-104 (128)
254 cd02985 TRX_CDSP32 TRX family, 96.9 0.0088 1.9E-07 48.5 9.2 82 278-362 15-101 (103)
255 cd02948 TRX_NDPK TRX domain, T 96.8 0.0064 1.4E-07 49.2 8.2 92 263-362 5-101 (102)
256 PRK15317 alkyl hydroperoxide r 96.8 0.0042 9.1E-08 65.4 8.9 82 153-252 116-197 (517)
257 PRK09437 bcp thioredoxin-depen 96.8 0.0071 1.5E-07 52.7 8.7 56 152-207 29-86 (154)
258 KOG0911 Glutaredoxin-related p 96.8 0.0098 2.1E-07 54.4 9.5 77 151-241 15-91 (227)
259 cd02989 Phd_like_TxnDC9 Phosdu 96.8 0.0096 2.1E-07 49.3 8.7 78 280-360 25-112 (113)
260 KOG0907 Thioredoxin [Posttrans 96.7 0.0093 2E-07 48.8 8.4 80 278-362 21-104 (106)
261 cd02957 Phd_like Phosducin (Ph 96.7 0.0096 2.1E-07 49.1 8.6 76 262-342 9-88 (113)
262 PRK10606 btuE putative glutath 96.7 0.01 2.2E-07 53.7 9.2 41 153-194 25-66 (183)
263 cd02949 TRX_NTR TRX domain, no 96.7 0.0092 2E-07 47.7 7.7 81 278-361 13-97 (97)
264 cd02975 PfPDO_like_N Pyrococcu 96.7 0.016 3.5E-07 47.9 9.3 80 280-362 24-108 (113)
265 cd02970 PRX_like2 Peroxiredoxi 96.6 0.0041 8.8E-08 53.5 6.0 55 153-207 24-79 (149)
266 cd02954 DIM1 Dim1 family; Dim1 96.6 0.0058 1.3E-07 50.6 6.5 63 278-342 14-80 (114)
267 cd03014 PRX_Atyp2cys Peroxired 96.6 0.0056 1.2E-07 52.6 6.7 54 153-207 26-80 (143)
268 PRK11200 grxA glutaredoxin 1; 96.6 0.0041 8.8E-08 48.6 5.3 80 156-252 2-82 (85)
269 cd02976 NrdH NrdH-redoxin (Nrd 96.6 0.0057 1.2E-07 45.4 5.9 54 157-222 2-56 (73)
270 cd02987 Phd_like_Phd Phosducin 96.6 0.011 2.5E-07 52.9 8.7 97 262-363 67-174 (175)
271 TIGR03137 AhpC peroxiredoxin. 96.6 0.016 3.4E-07 52.6 9.4 42 153-194 31-74 (187)
272 KOG1672 ATP binding protein [P 96.5 0.0024 5.3E-08 56.9 3.3 76 143-228 74-149 (211)
273 PF07449 HyaE: Hydrogenase-1 e 96.4 0.008 1.7E-07 49.1 5.5 82 138-228 11-94 (107)
274 cd03018 PRX_AhpE_like Peroxire 96.3 0.0096 2.1E-07 51.3 6.4 55 153-207 28-84 (149)
275 cd03020 DsbA_DsbC_DsbG DsbA fa 96.3 0.0076 1.6E-07 55.0 5.8 85 151-249 75-197 (197)
276 cd02968 SCO SCO (an acronym fo 96.3 0.0095 2.1E-07 50.9 6.1 43 152-194 21-68 (142)
277 PRK10877 protein disulfide iso 96.3 0.015 3.3E-07 54.6 7.8 88 151-252 105-230 (232)
278 PLN00410 U5 snRNP protein, DIM 96.3 0.03 6.5E-07 48.3 8.9 83 278-362 23-118 (142)
279 COG2143 Thioredoxin-related pr 96.2 0.027 5.8E-07 48.7 8.0 91 148-247 37-143 (182)
280 PRK10382 alkyl hydroperoxide r 96.1 0.046 9.9E-07 49.6 9.8 93 153-252 31-155 (187)
281 cd02971 PRX_family Peroxiredox 96.1 0.019 4E-07 48.8 6.9 55 152-206 21-77 (140)
282 cd02984 TRX_PICOT TRX domain, 96.0 0.055 1.2E-06 42.8 8.9 77 280-360 17-96 (97)
283 PF00462 Glutaredoxin: Glutare 96.0 0.011 2.4E-07 42.7 4.3 54 157-222 1-55 (60)
284 cd03419 GRX_GRXh_1_2_like Glut 96.0 0.01 2.2E-07 45.6 4.3 58 157-226 2-61 (82)
285 TIGR03140 AhpF alkyl hydropero 96.0 0.028 6E-07 59.2 8.9 82 153-252 117-198 (515)
286 KOG3192 Mitochondrial J-type c 95.9 0.0084 1.8E-07 51.5 3.8 65 34-98 5-79 (168)
287 cd02066 GRX_family Glutaredoxi 95.9 0.013 2.9E-07 43.1 4.6 53 157-221 2-55 (72)
288 cd02947 TRX_family TRX family; 95.9 0.047 1E-06 41.9 8.0 65 293-361 29-93 (93)
289 cd02951 SoxW SoxW family; SoxW 95.9 0.035 7.6E-07 46.5 7.7 43 320-362 74-117 (125)
290 cd02986 DLP Dim1 family, Dim1- 95.9 0.042 9.1E-07 45.4 7.6 69 277-347 13-85 (114)
291 PF14595 Thioredoxin_9: Thiore 95.9 0.015 3.3E-07 49.4 5.1 67 153-226 41-107 (129)
292 cd02972 DsbA_family DsbA famil 95.7 0.023 5E-07 44.3 5.5 37 157-193 1-37 (98)
293 cd02962 TMX2 TMX2 family; comp 95.7 0.055 1.2E-06 47.3 8.2 78 262-342 33-120 (152)
294 cd02992 PDI_a_QSOX PDIa family 95.6 0.095 2.1E-06 43.3 8.8 71 280-350 22-101 (114)
295 KOG3414 Component of the U4/U6 95.5 0.038 8.3E-07 45.9 6.0 74 146-228 14-89 (142)
296 PRK13190 putative peroxiredoxi 95.4 0.1 2.2E-06 47.9 9.4 91 155-252 30-153 (202)
297 cd02988 Phd_like_VIAF Phosduci 95.4 0.062 1.3E-06 48.9 7.8 94 262-362 87-190 (192)
298 PF03190 Thioredox_DsbH: Prote 95.4 0.032 6.8E-07 49.2 5.5 75 145-228 29-114 (163)
299 cd03069 PDI_b_ERp57 PDIb famil 95.3 0.074 1.6E-06 43.2 7.2 92 144-252 9-103 (104)
300 TIGR02190 GlrX-dom Glutaredoxi 95.3 0.038 8.3E-07 42.4 5.1 58 155-226 8-65 (79)
301 PTZ00253 tryparedoxin peroxida 95.2 0.17 3.7E-06 46.2 10.2 93 153-252 36-163 (199)
302 COG1076 DjlA DnaJ-domain-conta 95.2 0.01 2.2E-07 53.2 1.9 51 37-87 113-173 (174)
303 cd03066 PDI_b_Calsequestrin_mi 95.2 0.12 2.7E-06 41.7 8.2 95 139-252 3-100 (102)
304 PRK15000 peroxidase; Provision 95.2 0.15 3.2E-06 46.8 9.6 100 152-252 33-161 (200)
305 TIGR02183 GRXA Glutaredoxin, G 95.2 0.033 7.1E-07 43.7 4.5 79 157-252 2-81 (86)
306 cd03016 PRX_1cys Peroxiredoxin 95.1 0.12 2.7E-06 47.3 8.8 41 155-195 28-69 (203)
307 TIGR01295 PedC_BrcD bacterioci 95.0 0.17 3.7E-06 42.5 8.6 79 280-361 25-121 (122)
308 PRK10329 glutaredoxin-like pro 94.9 0.064 1.4E-06 41.6 5.5 74 157-252 3-76 (81)
309 PRK15317 alkyl hydroperoxide r 94.9 0.97 2.1E-05 47.6 16.0 174 153-362 18-196 (517)
310 TIGR00411 redox_disulf_1 small 94.7 0.22 4.7E-06 37.9 7.9 63 293-362 18-80 (82)
311 KOG0431 Auxilin-like protein a 94.7 0.071 1.5E-06 54.9 6.6 39 29-71 384-422 (453)
312 PF01216 Calsequestrin: Calseq 94.6 0.31 6.7E-06 47.6 10.3 54 306-363 90-143 (383)
313 PF11009 DUF2847: Protein of u 94.6 0.041 8.9E-07 44.8 3.7 91 143-245 7-104 (105)
314 TIGR03140 AhpF alkyl hydropero 94.5 1.6 3.5E-05 45.9 16.4 175 153-362 18-197 (515)
315 cd03023 DsbA_Com1_like DsbA fa 94.4 0.059 1.3E-06 46.2 4.6 31 152-182 4-34 (154)
316 cd02952 TRP14_like Human TRX-r 94.3 0.25 5.4E-06 41.3 7.9 49 292-340 46-100 (119)
317 PRK13599 putative peroxiredoxi 94.2 0.28 6E-06 45.5 8.8 97 155-252 31-155 (215)
318 TIGR02194 GlrX_NrdH Glutaredox 94.2 0.099 2.1E-06 39.3 4.8 53 158-222 2-54 (72)
319 PRK13189 peroxiredoxin; Provis 94.0 0.31 6.7E-06 45.4 8.8 41 155-195 38-79 (222)
320 KOG2640 Thioredoxin [Function 94.0 0.042 9.1E-07 52.7 2.9 88 151-252 74-161 (319)
321 PRK11657 dsbG disulfide isomer 93.8 0.39 8.5E-06 45.6 9.2 28 151-178 115-142 (251)
322 cd03072 PDI_b'_ERp44 PDIb' fam 93.8 0.22 4.7E-06 41.1 6.5 81 281-363 20-107 (111)
323 PRK13191 putative peroxiredoxi 93.8 0.38 8.3E-06 44.6 8.9 97 155-252 36-160 (215)
324 cd03019 DsbA_DsbA DsbA family, 93.7 0.09 2E-06 46.6 4.5 42 152-193 14-55 (178)
325 cd03029 GRX_hybridPRX5 Glutare 93.7 0.15 3.3E-06 38.1 5.1 69 157-249 3-71 (72)
326 PTZ00137 2-Cys peroxiredoxin; 93.7 0.35 7.5E-06 46.2 8.6 93 153-252 98-224 (261)
327 PTZ00051 thioredoxin; Provisio 93.7 0.33 7.1E-06 38.3 7.3 60 293-357 37-96 (98)
328 PF02114 Phosducin: Phosducin; 93.6 0.23 5E-06 47.5 7.2 69 293-365 165-239 (265)
329 cd03418 GRX_GRXb_1_3_like Glut 93.4 0.2 4.3E-06 37.6 5.3 56 157-226 2-59 (75)
330 cd02958 UAS UAS family; UAS is 93.3 1 2.3E-05 36.8 10.0 53 310-362 56-109 (114)
331 cd03027 GRX_DEP Glutaredoxin ( 93.1 0.24 5.1E-06 37.2 5.3 53 157-221 3-56 (73)
332 TIGR02181 GRX_bact Glutaredoxi 93.0 0.12 2.6E-06 39.4 3.6 55 158-226 2-57 (79)
333 PF13098 Thioredoxin_2: Thiore 92.9 0.21 4.5E-06 40.6 5.1 41 320-360 72-112 (112)
334 COG0695 GrxC Glutaredoxin and 92.6 0.29 6.2E-06 37.8 5.3 54 157-222 3-59 (80)
335 TIGR02189 GlrX-like_plant Glut 92.6 0.21 4.7E-06 40.2 4.6 62 149-226 4-69 (99)
336 COG1076 DjlA DnaJ-domain-conta 92.4 0.082 1.8E-06 47.3 2.1 61 38-98 2-72 (174)
337 cd03073 PDI_b'_ERp72_ERp57 PDI 92.1 0.47 1E-05 39.1 6.3 68 293-363 37-110 (111)
338 TIGR02740 TraF-like TraF-like 91.5 1.6 3.5E-05 42.0 10.1 81 280-362 169-262 (271)
339 cd03067 PDI_b_PDIR_N PDIb fami 91.5 0.86 1.9E-05 36.6 6.6 82 279-362 21-110 (112)
340 PRK10638 glutaredoxin 3; Provi 91.4 0.42 9.1E-06 36.9 4.9 54 157-222 4-58 (83)
341 PF07449 HyaE: Hydrogenase-1 e 91.2 0.47 1E-05 38.8 5.2 69 268-341 19-93 (107)
342 PF13462 Thioredoxin_4: Thiore 90.7 0.36 7.7E-06 41.9 4.5 44 151-194 10-55 (162)
343 PF02966 DIM1: Mitosis protein 90.5 0.48 1E-05 39.9 4.7 71 147-227 12-85 (133)
344 KOG0908 Thioredoxin-like prote 90.5 1.6 3.5E-05 40.8 8.6 78 280-362 24-104 (288)
345 PRK00293 dipZ thiol:disulfide 90.3 0.98 2.1E-05 48.2 8.1 57 306-362 508-568 (571)
346 PHA03050 glutaredoxin; Provisi 90.3 0.33 7.1E-06 39.8 3.6 65 149-226 9-77 (108)
347 cd03068 PDI_b_ERp72 PDIb famil 90.2 0.91 2E-05 37.1 6.1 92 144-251 9-106 (107)
348 cd03028 GRX_PICOT_like Glutare 90.2 0.63 1.4E-05 36.6 5.0 50 163-226 21-71 (90)
349 TIGR00365 monothiol glutaredox 89.7 0.44 9.6E-06 38.2 3.8 50 163-226 25-75 (97)
350 PRK10954 periplasmic protein d 89.2 0.37 8.1E-06 44.3 3.5 41 153-193 37-80 (207)
351 PF05768 DUF836: Glutaredoxin- 89.1 0.85 1.9E-05 35.1 4.9 80 157-250 2-81 (81)
352 PRK03147 thiol-disulfide oxido 88.5 2.8 6E-05 36.7 8.5 43 320-362 128-170 (173)
353 PF03656 Pam16: Pam16; InterP 88.0 0.85 1.9E-05 38.5 4.5 53 38-91 59-111 (127)
354 KOG3171 Conserved phosducin-li 87.3 1.2 2.5E-05 40.8 5.1 83 135-228 137-223 (273)
355 smart00594 UAS UAS domain. 86.6 5 0.00011 33.4 8.5 49 312-360 68-121 (122)
356 KOG3170 Conserved phosducin-li 86.6 0.78 1.7E-05 41.4 3.6 99 138-252 93-200 (240)
357 PF11009 DUF2847: Protein of u 86.5 4.8 0.0001 32.8 7.9 93 262-356 4-104 (105)
358 KOG0914 Thioredoxin-like prote 85.8 1.6 3.6E-05 40.0 5.3 72 268-341 135-216 (265)
359 PF00837 T4_deiodinase: Iodoth 84.7 4 8.7E-05 38.2 7.5 54 135-188 81-137 (237)
360 PRK10824 glutaredoxin-4; Provi 83.8 1.7 3.7E-05 36.1 4.2 50 163-226 28-78 (115)
361 cd03013 PRX5_like Peroxiredoxi 83.5 3.2 7E-05 36.2 6.2 54 154-207 30-87 (155)
362 KOG1731 FAD-dependent sulfhydr 83.2 2.5 5.5E-05 44.1 6.0 52 290-341 73-127 (606)
363 cd03011 TlpA_like_ScsD_MtbDsbE 83.2 7.3 0.00016 31.8 8.0 38 320-358 83-120 (123)
364 TIGR00412 redox_disulf_2 small 83.0 5.2 0.00011 30.2 6.4 59 292-360 16-75 (76)
365 PRK12759 bifunctional gluaredo 82.1 2 4.4E-05 43.8 4.9 60 157-222 4-66 (410)
366 PTZ00062 glutaredoxin; Provisi 80.8 8 0.00017 35.5 7.9 71 280-363 19-93 (204)
367 PF11833 DUF3353: Protein of u 79.9 3.2 6.9E-05 37.8 4.9 39 46-89 1-40 (194)
368 PF13728 TraF: F plasmid trans 79.6 11 0.00025 34.8 8.6 77 281-359 124-213 (215)
369 KOG1752 Glutaredoxin and relat 78.9 4.6 0.0001 32.8 5.1 34 157-194 16-49 (104)
370 PRK14018 trifunctional thiored 77.7 10 0.00022 39.9 8.5 43 320-362 129-171 (521)
371 cd02959 ERp19 Endoplasmic reti 74.3 3.6 7.7E-05 34.1 3.3 65 277-342 18-88 (117)
372 cd02991 UAS_ETEA UAS family, E 74.3 42 0.00091 27.7 9.8 48 315-362 61-111 (116)
373 cd03009 TryX_like_TryX_NRX Try 72.9 11 0.00025 31.2 6.2 23 320-342 89-111 (131)
374 COG2143 Thioredoxin-related pr 72.4 8.3 0.00018 33.7 5.1 39 320-358 105-143 (182)
375 cd02973 TRX_GRX_like Thioredox 70.5 13 0.00029 26.7 5.4 41 293-336 18-58 (67)
376 KOG3171 Conserved phosducin-li 69.7 7.3 0.00016 35.7 4.3 82 280-365 162-252 (273)
377 PF13446 RPT: A repeated domai 69.5 4.9 0.00011 29.2 2.7 27 37-63 5-31 (62)
378 cd03070 PDI_b_ERp44 PDIb famil 68.7 36 0.00077 27.0 7.6 70 276-352 15-85 (91)
379 KOG0724 Zuotin and related mol 68.4 5.3 0.00011 39.5 3.6 52 49-100 4-62 (335)
380 PF13743 Thioredoxin_5: Thiore 67.4 4.5 9.8E-05 36.1 2.6 36 159-194 2-37 (176)
381 PF13192 Thioredoxin_3: Thiore 67.3 20 0.00043 26.9 5.9 36 320-361 40-76 (76)
382 COG3019 Predicted metal-bindin 67.3 20 0.00044 30.6 6.2 78 154-252 25-103 (149)
383 cd02966 TlpA_like_family TlpA- 66.8 32 0.00069 26.7 7.4 23 320-342 87-109 (116)
384 KOG2603 Oligosaccharyltransfer 64.9 48 0.001 32.3 9.1 99 262-363 45-165 (331)
385 TIGR02739 TraF type-F conjugat 63.5 39 0.00085 32.1 8.3 78 281-360 154-244 (256)
386 cd03026 AhpF_NTD_C TRX-GRX-lik 62.0 56 0.0012 25.5 7.7 54 294-355 32-85 (89)
387 KOG1672 ATP binding protein [P 62.0 28 0.0006 31.6 6.4 83 277-362 84-176 (211)
388 TIGR02738 TrbB type-F conjugat 61.8 60 0.0013 28.2 8.6 80 281-362 54-151 (153)
389 cd02964 TryX_like_family Trypa 61.2 24 0.00051 29.4 5.8 22 320-341 89-110 (132)
390 cd02955 SSP411 TRX domain, SSP 61.0 77 0.0017 26.5 8.8 18 325-342 75-92 (124)
391 COG1225 Bcp Peroxiredoxin [Pos 57.8 37 0.00081 29.8 6.5 55 153-207 30-86 (157)
392 COG4232 Thiol:disulfide interc 55.6 17 0.00037 38.4 4.7 49 315-363 519-567 (569)
393 PHA02125 thioredoxin-like prot 54.2 78 0.0017 23.4 7.1 17 319-335 35-51 (75)
394 cd03010 TlpA_like_DsbE TlpA-li 53.3 65 0.0014 26.3 7.2 36 320-355 90-125 (127)
395 PRK13703 conjugal pilus assemb 52.9 67 0.0015 30.4 7.9 68 292-361 161-238 (248)
396 TIGR00385 dsbE periplasmic pro 50.8 27 0.00059 30.7 4.7 44 320-363 127-170 (173)
397 PF14687 DUF4460: Domain of un 49.7 31 0.00067 28.4 4.5 43 47-89 4-53 (112)
398 PRK13728 conjugal transfer pro 48.8 1.5E+02 0.0033 26.6 9.1 80 281-362 73-169 (181)
399 KOG3414 Component of the U4/U6 48.5 80 0.0017 26.6 6.6 67 277-346 22-93 (142)
400 PF13905 Thioredoxin_8: Thiore 48.4 1.1E+02 0.0023 23.5 7.3 58 280-341 36-93 (95)
401 PLN02919 haloacid dehalogenase 48.3 89 0.0019 36.2 9.4 44 320-363 492-535 (1057)
402 PF13462 Thioredoxin_4: Thiore 44.8 30 0.00064 29.6 3.9 36 201-251 127-162 (162)
403 cd02967 mauD Methylamine utili 43.2 73 0.0016 25.3 5.8 42 293-334 40-82 (114)
404 cd02974 AhpF_NTD_N Alkyl hydro 42.6 1.1E+02 0.0025 24.1 6.6 73 153-250 19-91 (94)
405 PRK15412 thiol:disulfide inter 41.7 52 0.0011 29.4 5.1 42 321-362 133-174 (185)
406 cd03031 GRX_GRX_like Glutaredo 40.9 59 0.0013 28.2 5.1 57 157-221 2-65 (147)
407 PF09673 TrbC_Ftype: Type-F co 40.9 97 0.0021 25.4 6.2 45 170-225 36-80 (113)
408 PF07739 TipAS: TipAS antibiot 37.7 78 0.0017 25.6 5.2 53 44-102 51-105 (118)
409 cd00570 GST_N_family Glutathio 37.3 68 0.0015 22.1 4.3 18 159-176 3-20 (71)
410 cd03041 GST_N_2GST_N GST_N fam 37.1 1.5E+02 0.0033 21.8 6.4 73 158-252 3-76 (77)
411 cd03060 GST_N_Omega_like GST_N 36.5 85 0.0018 22.7 4.8 51 158-221 2-53 (71)
412 cd03025 DsbA_FrnE_like DsbA fa 36.4 42 0.00091 29.7 3.7 27 157-183 3-29 (193)
413 cd03023 DsbA_Com1_like DsbA fa 35.9 54 0.0012 27.4 4.1 35 200-249 119-153 (154)
414 PF13417 GST_N_3: Glutathione 35.8 94 0.002 22.9 5.0 68 160-252 2-70 (75)
415 PF13743 Thioredoxin_5: Thiore 35.8 30 0.00064 30.8 2.5 38 200-245 137-174 (176)
416 TIGR02742 TrbC_Ftype type-F co 34.2 1.3E+02 0.0029 25.4 6.1 70 171-252 38-114 (130)
417 PF01323 DSBA: DSBA-like thior 34.0 64 0.0014 28.4 4.4 36 200-249 157-192 (193)
418 cd02977 ArsC_family Arsenate R 33.9 22 0.00047 28.5 1.2 31 158-194 2-32 (105)
419 PF07709 SRR: Seven Residue Re 32.9 28 0.00061 17.3 1.1 13 76-88 2-14 (14)
420 PRK10877 protein disulfide iso 32.3 56 0.0012 30.5 3.8 39 320-363 192-230 (232)
421 COG1651 DsbG Protein-disulfide 31.6 1E+02 0.0022 28.6 5.5 37 320-362 205-241 (244)
422 KOG2501 Thioredoxin, nucleored 30.3 1.3E+02 0.0027 26.5 5.3 33 310-342 95-127 (157)
423 cd03035 ArsC_Yffb Arsenate Red 29.8 27 0.00059 28.2 1.1 16 158-173 2-17 (105)
424 cd03062 TRX_Fd_Sucrase TRX-lik 28.0 2.4E+02 0.0052 22.3 6.3 62 163-252 14-82 (97)
425 TIGR02742 TrbC_Ftype type-F co 27.5 1.2E+02 0.0025 25.8 4.6 23 319-341 60-82 (130)
426 PF12434 Malate_DH: Malate deh 27.0 68 0.0015 19.3 2.1 17 51-67 10-26 (28)
427 COG5552 Uncharacterized conser 26.2 1.9E+02 0.0041 21.9 4.8 31 36-66 2-32 (88)
428 PF01323 DSBA: DSBA-like thior 25.7 58 0.0013 28.7 2.7 28 157-184 2-29 (193)
429 PF13778 DUF4174: Domain of un 25.5 3.8E+02 0.0083 22.0 8.5 42 321-362 68-110 (118)
430 cd03020 DsbA_DsbC_DsbG DsbA fa 24.7 77 0.0017 28.4 3.3 36 320-360 162-197 (197)
431 TIGR03044 PS_II_psb27 photosys 23.9 3.8E+02 0.0081 22.9 6.9 48 41-88 50-102 (135)
432 COG2761 FrnE Predicted dithiol 23.8 1.5E+02 0.0032 27.7 4.9 38 201-252 175-212 (225)
433 PHA03075 glutaredoxin-like pro 22.7 98 0.0021 25.7 3.1 37 154-194 2-38 (123)
434 PRK01655 spxA transcriptional 22.7 53 0.0012 27.7 1.7 16 157-172 2-17 (131)
435 cd03036 ArsC_like Arsenate Red 22.6 44 0.00095 27.2 1.1 31 158-194 2-32 (111)
436 PF11287 DUF3088: Protein of u 22.5 3.5E+02 0.0076 22.3 6.3 80 165-252 24-106 (112)
437 PF12725 DUF3810: Protein of u 21.9 3.3E+02 0.0072 26.8 7.3 76 15-90 58-149 (318)
438 cd03024 DsbA_FrnE DsbA family, 21.4 1.3E+02 0.0029 26.6 4.2 36 200-249 165-200 (201)
439 TIGR01617 arsC_related transcr 21.2 49 0.0011 27.2 1.1 31 158-194 2-32 (117)
440 PF02630 SCO1-SenC: SCO1/SenC; 21.0 2E+02 0.0044 25.3 5.2 55 152-206 51-109 (174)
441 cd03045 GST_N_Delta_Epsilon GS 20.5 2.3E+02 0.0051 20.2 4.7 54 158-222 2-57 (74)
442 COG3531 Predicted protein-disu 20.2 1.4E+02 0.003 27.3 3.8 42 200-252 164-208 (212)
No 1
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=7.4e-31 Score=263.04 Aligned_cols=251 Identities=17% Similarity=0.209 Sum_probs=194.3
Q ss_pred cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCcc
Q 014549 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQI 211 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~ 211 (423)
...|++||..||++.|..+..++|+|||||||||++++|+|+++|..|+.. +.+|+|||+ .+..+|++|+
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat---~~~~~~~~y~---- 96 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETINGHEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDAT---EESDLASKYE---- 96 (493)
T ss_pred ccceEEEecccHHHHhccCceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecc---hhhhhHhhhc----
Confidence 456899999999999999999999999999999999999999999999874 699999999 5567999999
Q ss_pred ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCC
Q 014549 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGER 291 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~ 291 (423)
|+||||+++|++|.. +..|+|+|++++|+.|++++ ..|....+.+.+....|+.+. ...++.+|.+....
T Consensus 97 --v~gyPTlkiFrnG~~----~~~Y~G~r~adgIv~wl~kq--~gPa~~~l~~~~~a~~~l~~~--~~~vig~F~d~~~~ 166 (493)
T KOG0190|consen 97 --VRGYPTLKIFRNGRS----AQDYNGPREADGIVKWLKKQ--SGPASKTLKTVDEAEEFLSKK--DVVVIGFFKDLESL 166 (493)
T ss_pred --CCCCCeEEEEecCCc----ceeccCcccHHHHHHHHHhc--cCCCceecccHHHHHhhccCC--ceEEEEEecccccc
Confidence 999999999999975 45999999999999999988 567776666666577888653 33555566543222
Q ss_pred CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCc
Q 014549 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (423)
Q Consensus 292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp 369 (423)
...+...|...++.+.|++.. ..+++++++++. .+.+++++..+.....|.|.++.+.|.+||..+++|++.
T Consensus 167 -~~~~~~~a~~l~~d~~F~~ts-----~~~~~~~~~~~~~~~~~i~l~kk~d~~~~~~~~~~~~~~l~~Fi~~~~~plv~ 240 (493)
T KOG0190|consen 167 -AESFFDAASKLRDDYKFAHTS-----DSDVAKKLELNTEGTFPIVLFKKFDELLVKYDGSFTPELLKKFIQENSLPLVT 240 (493)
T ss_pred -hHHHHHHHHhccccceeeccC-----cHhHHhhccCCCCCcceEEeccccccchhhcccccCHHHHHHHHHHhcccccc
Confidence 234445666667778887432 356888888863 456899998888888889999999999999999999999
Q ss_pred ccccccccccCCCCCCccCCCCCCcceEEEEEEc-cCChhhHHHHHHHhhh
Q 014549 370 QLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMREVSISA 419 (423)
Q Consensus 370 ~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~-~~~~~~~~~~~~~~~~ 419 (423)
++|..+.-.+.-. .. ..-++++. ....+++.+++.++++
T Consensus 241 ~ft~~~~~~~~~~------~~-----~~~~~~~~~~~~~~~e~~~~~~~~v 280 (493)
T KOG0190|consen 241 EFTVANNAKIYSS------FV-----KLGLDFFVFFKCNRFEELRKKFEEV 280 (493)
T ss_pred eecccccceeecc------cc-----ccceeEEeccccccHHHHHHHHHHH
Confidence 9999766655311 11 24445543 2233555565555554
No 2
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.92 E-value=1.5e-24 Score=200.40 Aligned_cols=223 Identities=16% Similarity=0.255 Sum_probs=150.3
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~ 227 (423)
+.+..|+|.||||||+||+++.|.|.++..+|+.. +++|++||+ ..+.++.+++ |+|||||++|+++.
T Consensus 41 kdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT---~f~aiAnefg------iqGYPTIk~~kgd~ 111 (468)
T KOG4277|consen 41 KDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDAT---RFPAIANEFG------IQGYPTIKFFKGDH 111 (468)
T ss_pred ccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccc---cchhhHhhhc------cCCCceEEEecCCe
Confidence 57889999999999999999999999999999865 799999999 7778999999 99999999999886
Q ss_pred CCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHH---HHHhcc
Q 014549 228 KSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQ---ISRNYW 304 (423)
Q Consensus 228 ~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~---~a~~~~ 304 (423)
. ..|+|+|+.++|++|+.+-. .|....+...+ ..|..-...+.|+.+||+.. ..|++.. +|.+
T Consensus 112 a-----~dYRG~R~Kd~iieFAhR~a--~aiI~pi~enQ--~~fehlq~Rhq~ffVf~Gtg---e~PL~d~fidAASe-- 177 (468)
T KOG4277|consen 112 A-----IDYRGGREKDAIIEFAHRCA--AAIIEPINENQ--IEFEHLQARHQPFFVFFGTG---EGPLFDAFIDAASE-- 177 (468)
T ss_pred e-----eecCCCccHHHHHHHHHhcc--cceeeecChhH--HHHHHHhhccCceEEEEeCC---CCcHHHHHHHHhhh--
Confidence 5 49999999999999998762 22222233222 12221112355888898732 2455433 3332
Q ss_pred ccceEEEEEccccccHHHHhhcC-CCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCcccccccccccCCCC
Q 014549 305 AYASFAFVLWREEESSIWWNTFE-VESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTSMELGCDA 383 (423)
Q Consensus 305 ~~~~f~~v~~~~~~~~~l~~~f~-v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~ 383 (423)
....+... .+ +++++-.++ .+.-|.+.+||+.. ..+| .+.+.++|.+||+..++|-+-..+..+..++.
T Consensus 178 -~~~~a~Ff--Sa-seeVaPe~~~~kempaV~VFKDet--f~i~-de~dd~dLseWinRERf~~fLa~dgflL~EiG--- 247 (468)
T KOG4277|consen 178 -KFSVARFF--SA-SEEVAPEENDAKEMPAVAVFKDET--FEIE-DEGDDEDLSEWINRERFPGFLAADGFLLAEIG--- 247 (468)
T ss_pred -heeeeeee--cc-ccccCCcccchhhccceEEEccce--eEEE-ecCchhHHHHHHhHhhccchhhcccchHHHhC---
Confidence 22222222 22 223333333 23489999998642 2232 22346889999999998877777777766664
Q ss_pred CCccCCCCCCcceEEEEEEc------cCChhhHHHHHH
Q 014549 384 RGYSRAGSDTTIWYCVILAG------RLSPELNKMREV 415 (423)
Q Consensus 384 ~~~~~~~~~~~~~~cvi~~~------~~~~~~~~~~~~ 415 (423)
. +|| +.++++. ++++++.++.+.
T Consensus 248 -~---sGK-----LVaLaVidEkhk~nns~eh~~~~ki 276 (468)
T KOG4277|consen 248 -A---SGK-----LVALAVIDEKHKFNNSSEHREFHKI 276 (468)
T ss_pred -c---CCc-----eEEEEEeccccccCCcchhHHHHHH
Confidence 2 455 6666663 244455555443
No 3
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.8e-25 Score=211.45 Aligned_cols=142 Identities=17% Similarity=0.102 Sum_probs=99.8
Q ss_pred CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchhhhhhh
Q 014549 33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQLHILE 109 (423)
Q Consensus 33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~~~~~ 109 (423)
.-..+|||++|||+++|+..|||+||||||+++|||+||+ ++++|++|+.||+|||||++|+.||++|+.+..+...
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~~~ 91 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDENK 91 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccccc
Confidence 3347899999999999999999999999999999999984 7788999999999999999999999999887653210
Q ss_pred -hhhhc--cCcccccccCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccc
Q 014549 110 -KVREQ--YGEESYSRIDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIA 186 (423)
Q Consensus 110 -~~~~~--~~~~~f~~~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~ 186 (423)
.+.+. ++.+++...+|++..+... +.+. .....|++.++.-.|.||-...+.|+...+-....+
T Consensus 92 ~~~~g~~~~~~f~~~f~dfg~~~~g~~-------~~e~------~~~g~~V~~~~e~~~~h~y~~~~~e~~r~~~v~~~~ 158 (336)
T KOG0713|consen 92 DGEGGGGGNDIFSAFFGDFGVTVGGNP-------LEEA------LPKGSDVSSDLEKQLEHFYMGNFVEEVREKGVYKPA 158 (336)
T ss_pred ccccCCcccchHHHhhcccccccCCCc-------ccCC------CCCCceEEeehhhchhhhhcccHHHHHhccCceeec
Confidence 01111 2333333334433222211 1111 345567777778889999888877776655443333
Q ss_pred e
Q 014549 187 N 187 (423)
Q Consensus 187 ~ 187 (423)
.
T Consensus 159 ~ 159 (336)
T KOG0713|consen 159 P 159 (336)
T ss_pred C
Confidence 3
No 4
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.91 E-value=4e-23 Score=212.74 Aligned_cols=222 Identities=16% Similarity=0.211 Sum_probs=165.6
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|++||.++|++.++++++++|.||||||++|+++.|.|+++|+.+++. +.++.|||+ ....+|++++ |
T Consensus 3 v~~l~~~~~~~~i~~~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------i 73 (462)
T TIGR01130 3 VLVLTKDNFDDFIKSHEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDAT---EEKDLAQKYG------V 73 (462)
T ss_pred ceECCHHHHHHHHhcCCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECC---CcHHHHHhCC------C
Confidence 789999999999988999999999999999999999999999998754 799999999 4456999999 9
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCch
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERASP 294 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~ 294 (423)
.++||+++|++|... ...|.|.++.++|.+|+.+.. .|....+++.+.++.|+... ...+|+|+.+..+....
T Consensus 74 ~~~Pt~~~~~~g~~~---~~~~~g~~~~~~l~~~i~~~~--~~~~~~i~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~ 146 (462)
T TIGR01130 74 SGYPTLKIFRNGEDS---VSDYNGPRDADGIVKYMKKQS--GPAVKEIETVADLEAFLADD--DVVVIGFFKDLDSELND 146 (462)
T ss_pred ccccEEEEEeCCccc---eeEecCCCCHHHHHHHHHHhc--CCCceeecCHHHHHHHHhcC--CcEEEEEECCCCcHHHH
Confidence 999999999988751 358999999999999998872 23333366555567777653 23445455433333445
Q ss_pred HHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce--eEecCCC--ChhHHHHHHHhhccccCcc
Q 014549 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VVYYGSF--NNSRLSEVMEQNKLQELPQ 370 (423)
Q Consensus 295 ~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~--~~y~g~~--~~~~l~~fi~~~~~~~lp~ 370 (423)
.+..+|..+.....+ .+... ...+.++++.. .+++++|+...... ..|.|+. +.+.|.+||..+.+|.+++
T Consensus 147 ~~~~~a~~~~~~~~~-~~~~~---~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~fi~~~~~p~v~~ 221 (462)
T TIGR01130 147 TFLSVAEKLRDVYFF-FAHSS---DVAAFAKLGAF-PDSVVLFKPKDEDEKFSKVDGEMDTDVSDLEKFIRAESLPLVGE 221 (462)
T ss_pred HHHHHHHHhhhccce-EEecC---CHHHHhhcCCC-CCcEEEecccccccccccccCcccCCHHHHHHHHHHcCCCceEe
Confidence 566677777665542 22211 23567777764 46666665543332 3567765 4579999999999999999
Q ss_pred cccccccccC
Q 014549 371 LRSVTSMELG 380 (423)
Q Consensus 371 l~~~~~~~~~ 380 (423)
++..+...+.
T Consensus 222 ~~~~~~~~~~ 231 (462)
T TIGR01130 222 FTQETAAKYF 231 (462)
T ss_pred eCCcchhhHh
Confidence 9988776554
No 5
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.89 E-value=2.1e-23 Score=173.27 Aligned_cols=107 Identities=8% Similarity=0.050 Sum_probs=94.0
Q ss_pred CCCCCCCCCcceeeEeccCCcccc---cCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHH
Q 014549 126 PLLDATDHSVHAFNVVTSEDFPSI---FHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHL 202 (423)
Q Consensus 126 ~~~~~~~~~~~~v~~L~~~nf~~~---v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l 202 (423)
|+|.+. +.|++|+++||++. ++++++++|.||||||++|+.+.|.|+++|+.+++.+.|++|||+ .+..+
T Consensus 3 ~~~~~~----~~v~~l~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d---~~~~l 75 (113)
T cd03006 3 PFFSQR----SPVLDFYKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW---WPQGK 75 (113)
T ss_pred CccCCC----CCeEEechhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC---CChHH
Confidence 455444 34899999999986 588999999999999999999999999999999988999999999 44558
Q ss_pred H-hhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 203 A-ERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 203 ~-~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
| ++++ |+++|||++|++|.. +..|.|.++.+.|+.|+
T Consensus 76 ~~~~~~------I~~~PTl~lf~~g~~----~~~y~G~~~~~~i~~~~ 113 (113)
T cd03006 76 CRKQKH------FFYFPVIHLYYRSRG----PIEYKGPMRAPYMEKFV 113 (113)
T ss_pred HHHhcC------CcccCEEEEEECCcc----ceEEeCCCCHHHHHhhC
Confidence 8 5899 999999999998865 56899999999999884
No 6
>PTZ00102 disulphide isomerase; Provisional
Probab=99.89 E-value=5.4e-22 Score=205.62 Aligned_cols=211 Identities=15% Similarity=0.182 Sum_probs=156.9
Q ss_pred eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.|.+|+.++|++.+.+++.++|.||||||++|+++.|.|+++|+.+++ .+.++.|||+ ....+|++++
T Consensus 33 ~v~~l~~~~f~~~i~~~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~---~~~~l~~~~~------ 103 (477)
T PTZ00102 33 HVTVLTDSTFDKFITENEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDAT---EEMELAQEFG------ 103 (477)
T ss_pred CcEEcchhhHHHHHhcCCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECC---CCHHHHHhcC------
Confidence 478999999999998889999999999999999999999999998864 4899999999 5556999999
Q ss_pred ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCCCCc
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGERAS 293 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~ 293 (423)
|++|||+++|.+|.. ..|.|.++.+.|++|+.+.. .|....+++.+....+.... ...+++.+.+..+...
T Consensus 104 i~~~Pt~~~~~~g~~-----~~y~g~~~~~~l~~~l~~~~--~~~~~~i~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 174 (477)
T PTZ00102 104 VRGYPTIKFFNKGNP-----VNYSGGRTADGIVSWIKKLT--GPAVTEVESASEIKLIAKKI--FVAFYGEYTSKDSELY 174 (477)
T ss_pred CCcccEEEEEECCce-----EEecCCCCHHHHHHHHHHhh--CCCceeecCHHHHHHhhccC--cEEEEEEeccCCcHHH
Confidence 999999999999865 28999999999999999872 34444455443233332221 1233334443322233
Q ss_pred hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccCccccc
Q 014549 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQELPQLRS 373 (423)
Q Consensus 294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~ 373 (423)
..+..+|..++....|..+. . . ..+.+++++..+.....|.| .+.++|.+||..+.+|.+.+++.
T Consensus 175 ~~f~~~a~~~~~~~~F~~~~--~-----------~-~~~~~~~~~~~~~~~~~~~~-~~~~~l~~fI~~~~~P~~~~~~~ 239 (477)
T PTZ00102 175 KKFEEVADKHREHAKFFVKK--H-----------E-GKNKIYVLHKDEEGVELFMG-KTKEELEEFVSTESFPLFAEINA 239 (477)
T ss_pred HHHHHHHHhccccceEEEEc--C-----------C-CCCcEEEEecCCCCcccCCC-CCHHHHHHHHHHcCCCceeecCc
Confidence 44566788887776665542 1 1 24667788765544433344 58899999999999999999999
Q ss_pred ccccccC
Q 014549 374 VTSMELG 380 (423)
Q Consensus 374 ~~~~~~~ 380 (423)
.+.....
T Consensus 240 ~~~~~~~ 246 (477)
T PTZ00102 240 ENYRRYI 246 (477)
T ss_pred cchHHHh
Confidence 9886654
No 7
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.87 E-value=2.8e-21 Score=179.24 Aligned_cols=216 Identities=15% Similarity=0.221 Sum_probs=156.6
Q ss_pred eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh-----ccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-----GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-----~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
|+.+|++.++++.+.++|.|||+||..++.++|+|+++|..++ |.+..|.|||+ .+..++.+|. |.
T Consensus 1 lt~~N~~~il~s~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd---~e~~ia~ky~------I~ 71 (375)
T KOG0912|consen 1 LTSENIDSILDSNELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCD---KEDDIADKYH------IN 71 (375)
T ss_pred CccccHHHhhccceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccc---hhhHHhhhhc------cc
Confidence 4678999999999999999999999999999999999999886 34789999999 6777999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhc-CCCceEEEEEecCCCCCch
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKT-GPHKVKVIFFSKTGERASP 294 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~-~~~~~~vl~f~~~~~~~~~ 294 (423)
+|||+++|++|.-. ...|+|.|++++|.+||.++.. -| |.....+.++-+-. +..+.++.+|.+.......
T Consensus 72 KyPTlKvfrnG~~~---~rEYRg~RsVeaL~efi~kq~s-~~----i~Ef~sl~~l~n~~~p~K~~vIgyF~~kdspey~ 143 (375)
T KOG0912|consen 72 KYPTLKVFRNGEMM---KREYRGQRSVEALIEFIEKQLS-DP----INEFESLDQLQNLDIPSKRTVIGYFPSKDSPEYD 143 (375)
T ss_pred cCceeeeeeccchh---hhhhccchhHHHHHHHHHHHhc-cH----HHHHHhHHHHHhhhccccceEEEEeccCCCchHH
Confidence 99999999999763 3489999999999999998822 12 11111122222222 2455677788744323344
Q ss_pred HHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce-eEecCCCC-hhHHHHHHHhhccccCcccc
Q 014549 295 FVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP-VVYYGSFN-NSRLSEVMEQNKLQELPQLR 372 (423)
Q Consensus 295 ~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~-~~y~g~~~-~~~l~~fi~~~~~~~lp~l~ 372 (423)
.++..|.-+++...|.. ...+.. ..-.-.+.+ +++|+++...+ ..|.|.++ .+.++.||.+.-.|++-++|
T Consensus 144 ~~~kva~~lr~dc~f~V-~~gD~~-----~~~~~~~~~-~~~f~pd~~~~~~~f~G~~~nf~el~~Wi~dKcvpLVREiT 216 (375)
T KOG0912|consen 144 NLRKVASLLRDDCVFLV-GFGDLL-----KPHEPPGKN-ILVFDPDHSEPNHEFLGSMTNFDELKQWIQDKCVPLVREIT 216 (375)
T ss_pred HHHHHHHHHhhccEEEe-eccccc-----cCCCCCCCc-eEEeCCCcCCcCcccccccccHHHHHHHHHhcchhhhhhhh
Confidence 45667777777766543 333321 111111122 56666554444 36899985 67899999999999999999
Q ss_pred cccccccC
Q 014549 373 SVTSMELG 380 (423)
Q Consensus 373 ~~~~~~~~ 380 (423)
=+|..++.
T Consensus 217 FeN~EELt 224 (375)
T KOG0912|consen 217 FENAEELT 224 (375)
T ss_pred hccHHHHh
Confidence 99988875
No 8
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=1.3e-22 Score=197.20 Aligned_cols=71 Identities=30% Similarity=0.499 Sum_probs=66.5
Q ss_pred CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (423)
Q Consensus 35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 105 (423)
...|||++|||+++||.+|||+|||+||++||||+|+ +++++|++|++||+|||||++|+.||+||+.+..
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 3679999999999999999999999999999999998 3788999999999999999999999999998743
No 9
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.86 E-value=4.9e-22 Score=162.22 Aligned_cols=99 Identities=21% Similarity=0.490 Sum_probs=91.2
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
|++||.++|++.+.++++|+|.||+|||++|+++.|.|+++|+.+++.+.|++|||+ .+..+|++++ |+++
T Consensus 3 ~~~l~~~~f~~~v~~~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~~ 73 (101)
T cd03003 3 IVTLDRGDFDAAVNSGEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCG---DDRMLCRSQG------VNSY 73 (101)
T ss_pred eEEcCHhhHHHHhcCCCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCC---ccHHHHHHcC------CCcc
Confidence 688999999999988899999999999999999999999999999998999999999 4456999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
||+++|++|.. ...|.|.++.+.|++|+
T Consensus 74 Pt~~~~~~g~~----~~~~~G~~~~~~l~~f~ 101 (101)
T cd03003 74 PSLYVFPSGMN----PEKYYGDRSKESLVKFA 101 (101)
T ss_pred CEEEEEcCCCC----cccCCCCCCHHHHHhhC
Confidence 99999998865 46899999999999884
No 10
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1e-20 Score=190.68 Aligned_cols=210 Identities=17% Similarity=0.327 Sum_probs=157.0
Q ss_pred eEeccCCccc-ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 139 NVVTSEDFPS-IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 139 ~~L~~~nf~~-~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
..++..+|.. .+....+|+|+||+|||+||+.+.|+|+++++.+++.+.+|.|||+ .+..+|++++ |++|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~---~~~~~~~~y~------i~gf 102 (383)
T KOG0191|consen 32 SELTLDSFFDFLLKDDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCD---EHKDLCEKYG------IQGF 102 (383)
T ss_pred hhhhccccHHHhhccCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCch---hhHHHHHhcC------CccC
Confidence 3344455554 4488999999999999999999999999999999999999999999 6666999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCC-----c-eeecccchhhhhhhhhcCCCceEEEEEec---C
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLP-----R-IFYYTKESMGKNFLAKTGPHKVKVIFFSK---T 288 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p-----~-~~~it~~~~~~~fl~~~~~~~~~vl~f~~---~ 288 (423)
||+++|.+| .. +..|.|.++.+.+.+|+.+.+.... . ...++..+ +...... .+..++|.|+.+ +
T Consensus 103 Ptl~~f~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~~~~~-~~~~~lv~f~aPwc~~ 176 (383)
T KOG0191|consen 103 PTLKVFRPG-KK---PIDYSGPRNAESLAEFLIKELEPSVKKLVEGEVFELTKDN-FDETVKD-SDADWLVEFYAPWCGH 176 (383)
T ss_pred cEEEEEcCC-Cc---eeeccCcccHHHHHHHHHHhhccccccccCCceEEccccc-hhhhhhc-cCcceEEEEeccccHH
Confidence 999999999 32 6789999999999999988733221 1 11123222 2222221 234478888775 2
Q ss_pred CCCCchHHHHHHHhcc--ccceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhhcc
Q 014549 289 GERASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKL 365 (423)
Q Consensus 289 ~~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~ 365 (423)
++...|.+..++..+. ..+.++. .+++ ...++++++|..+|++.+|+++......|.|.++.+.|.+|++...-
T Consensus 177 ck~l~~~~~~~a~~~~~~~~v~~~~---~d~~~~~~~~~~~~v~~~Pt~~~f~~~~~~~~~~~~~R~~~~i~~~v~~~~~ 253 (383)
T KOG0191|consen 177 CKKLAPEWEKLAKLLKSKENVELGK---IDATVHKSLASRLEVRGYPTLKLFPPGEEDIYYYSGLRDSDSIVSFVEKKER 253 (383)
T ss_pred hhhcChHHHHHHHHhccCcceEEEe---eccchHHHHhhhhcccCCceEEEecCCCcccccccccccHHHHHHHHHhhcC
Confidence 3455688888887664 3333333 3443 37899999999999999999877624455788999999999998655
Q ss_pred c
Q 014549 366 Q 366 (423)
Q Consensus 366 ~ 366 (423)
.
T Consensus 254 ~ 254 (383)
T KOG0191|consen 254 R 254 (383)
T ss_pred C
Confidence 5
No 11
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.84 E-value=2.7e-21 Score=159.98 Aligned_cols=103 Identities=16% Similarity=0.154 Sum_probs=88.0
Q ss_pred eeEeccCCcccccCCCCcEEEEEec--CCCc---cccccHHHHHHHHHHhhccceEEEEEcccc--hhhhHHHhhCCCCc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYS--DGSY---LCGQFSGAWKTIAALLEGIANTGMVELGDI--RLATHLAERKPIGQ 210 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYa--pwC~---~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--~~~~~l~~~~~~~~ 210 (423)
+++||+.||+++|++++.+||+||| |||+ ||++++|+|.+++.. +.||+|||++. ..+.+||++|+
T Consensus 3 ~v~L~~~nF~~~v~~~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~~----v~lakVd~~d~~~~~~~~L~~~y~--- 75 (116)
T cd03007 3 CVDLDTVTFYKVIPKFKYSLVKFDTAYPYGEKHEAFTRLAESSASATDD----LLVAEVGIKDYGEKLNMELGERYK--- 75 (116)
T ss_pred eeECChhhHHHHHhcCCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcCc----eEEEEEecccccchhhHHHHHHhC---
Confidence 6899999999999999999999999 9999 888888888887764 78999999421 13467999999
Q ss_pred ccccc--CccEEEEeCCCCCCCCCcccccCC-CCHHHHHHHHHHh
Q 014549 211 IFFRR--GLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWFATA 252 (423)
Q Consensus 211 ~~~i~--~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi~~~ 252 (423)
|+ +||||++|++|... .+..|+|. |+.++|++|+.++
T Consensus 76 ---I~~~gyPTl~lF~~g~~~--~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 76 ---LDKESYPVIYLFHGGDFE--NPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred ---CCcCCCCEEEEEeCCCcC--CCccCCCCcccHHHHHHHHHhc
Confidence 98 99999999998521 14689997 9999999999875
No 12
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.84 E-value=5.2e-21 Score=158.15 Aligned_cols=101 Identities=20% Similarity=0.309 Sum_probs=90.4
Q ss_pred eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc------cceEEEEEcccchhhhHHHhhCCCCc
Q 014549 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG------IANTGMVELGDIRLATHLAERKPIGQ 210 (423)
Q Consensus 137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~------~~~~~~Vdc~~~~~~~~l~~~~~~~~ 210 (423)
.|++|+.++|++.++++++++|.||||||++|+++.|.|+++|+.+++ .+.+++|||+ .+.++|++++
T Consensus 2 ~v~~l~~~~f~~~i~~~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d---~~~~l~~~~~--- 75 (108)
T cd02996 2 EIVSLTSGNIDDILQSAELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD---KESDIADRYR--- 75 (108)
T ss_pred ceEEcCHhhHHHHHhcCCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC---CCHHHHHhCC---
Confidence 478999999999998889999999999999999999999999998753 4789999999 4456999999
Q ss_pred cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
|+++||+++|++|+.. ...|.|.++.++|++|+
T Consensus 76 ---v~~~Ptl~~~~~g~~~---~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 76 ---INKYPTLKLFRNGMMM---KREYRGQRSVEALAEFV 108 (108)
T ss_pred ---CCcCCEEEEEeCCcCc---ceecCCCCCHHHHHhhC
Confidence 9999999999999742 46899999999999985
No 13
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.84 E-value=5.7e-21 Score=156.65 Aligned_cols=101 Identities=21% Similarity=0.447 Sum_probs=90.2
Q ss_pred eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
.|++||.++|++.+ +++++++|.||||||++|+++.|.|+++++.+.+.+.+++|||+ ....+|++++ |+
T Consensus 2 ~v~~l~~~~f~~~i~~~~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------i~ 72 (104)
T cd03004 2 SVITLTPEDFPELVLNRKEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQ---KYESLCQQAN------IR 72 (104)
T ss_pred cceEcCHHHHHHHHhcCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECC---chHHHHHHcC------CC
Confidence 46889999999887 66789999999999999999999999999999888999999999 4556999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCC-HHHHHHHH
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELS-VDAVTDWF 249 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~-~~~l~~fi 249 (423)
++||+++|.+|+.. ...|.|.++ .++|.+|+
T Consensus 73 ~~Pt~~~~~~g~~~---~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 73 AYPTIRLYPGNASK---YHSYNGWHRDADSILEFI 104 (104)
T ss_pred cccEEEEEcCCCCC---ceEccCCCCCHHHHHhhC
Confidence 99999999998432 678999987 99999885
No 14
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.81 E-value=5.3e-20 Score=149.85 Aligned_cols=102 Identities=17% Similarity=0.362 Sum_probs=94.1
Q ss_pred eeEeccCCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549 138 FNVVTSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (423)
Q Consensus 138 v~~L~~~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~ 216 (423)
|.+||.++|++.+.+ +++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+ ....+|++++ |.+
T Consensus 1 v~~lt~~~f~~~i~~~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~---~~~~l~~~~~------v~~ 71 (103)
T PF00085_consen 1 VIVLTDENFEKFINESDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD---ENKELCKKYG------VKS 71 (103)
T ss_dssp SEEESTTTHHHHHTTTSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT---TSHHHHHHTT------CSS
T ss_pred CEECCHHHHHHHHHccCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh---ccchhhhccC------CCC
Confidence 578999999999965 999999999999999999999999999999988999999999 4456999999 999
Q ss_pred ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+||+++|.+|+. ...|.|.++.+.|.+|+.++
T Consensus 72 ~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 72 VPTIIFFKNGKE----VKRYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp SSEEEEEETTEE----EEEEESSSSHHHHHHHHHHH
T ss_pred CCEEEEEECCcE----EEEEECCCCHHHHHHHHHcC
Confidence 999999999987 45899999999999999874
No 15
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.80 E-value=1.1e-19 Score=148.28 Aligned_cols=98 Identities=17% Similarity=0.386 Sum_probs=86.7
Q ss_pred eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
.|++||.++|++++.+. |+|.||||||++|+++.|.|+++++.+++. +.+++|||++ ...+|++++ |+
T Consensus 2 ~v~~l~~~~f~~~~~~~--~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~---~~~~~~~~~------i~ 70 (101)
T cd02994 2 NVVELTDSNWTLVLEGE--WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQ---EPGLSGRFF------VT 70 (101)
T ss_pred ceEEcChhhHHHHhCCC--EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccC---CHhHHHHcC------Cc
Confidence 47899999999988543 899999999999999999999999988754 8999999994 455999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~ 250 (423)
++||+++|++|.. ..|.|.++.++|.+|+.
T Consensus 71 ~~Pt~~~~~~g~~-----~~~~G~~~~~~l~~~i~ 100 (101)
T cd02994 71 ALPTIYHAKDGVF-----RRYQGPRDKEDLISFIE 100 (101)
T ss_pred ccCEEEEeCCCCE-----EEecCCCCHHHHHHHHh
Confidence 9999999988853 47999999999999985
No 16
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=6.4e-20 Score=176.10 Aligned_cols=69 Identities=35% Similarity=0.600 Sum_probs=66.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 104 (423)
.+.+|++|||+++|+.+|||+|||+||++||||+||++.++|++|..||++||||++|+.||+||+++.
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~ 71 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGL 71 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence 468999999999999999999999999999999999999999999999999999999999999998864
No 17
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.9e-19 Score=148.62 Aligned_cols=105 Identities=20% Similarity=0.391 Sum_probs=91.5
Q ss_pred eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (423)
Q Consensus 138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~ 216 (423)
|++|+.++|++.| +++++++|.||+|||++|+++.|.|+++|+.+.+.+.++.|||+++. ...+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~-~~~~~~~~~------i~~ 74 (109)
T cd03002 2 VYELTPKNFDKVVHNTNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDK-NKPLCGKYG------VQG 74 (109)
T ss_pred eEEcchhhHHHHHhcCCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccc-cHHHHHHcC------CCc
Confidence 6889999999988 66788999999999999999999999999999988999999999532 466999999 999
Q ss_pred ccEEEEeCCCCCC-CCCcccccCCCCHHHHHHHH
Q 014549 217 LPSLVAFPPGCKS-SDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 217 ~Pti~~f~~g~~~-~~~~~~y~G~~~~~~l~~fi 249 (423)
+||+++|.+|+.. ......|.|.++.++|++|+
T Consensus 75 ~Pt~~~~~~~~~~~~~~~~~~~G~~~~~~l~~fi 108 (109)
T cd03002 75 FPTLKVFRPPKKASKHAVEDYNGERSAKAIVDFV 108 (109)
T ss_pred CCEEEEEeCCCcccccccccccCccCHHHHHHHh
Confidence 9999999999620 01246899999999999997
No 18
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.79 E-value=2.9e-19 Score=149.55 Aligned_cols=110 Identities=14% Similarity=0.175 Sum_probs=91.8
Q ss_pred CCCCCCCCCCcceeeEeccCCccccc-CCCCcEEEEEecCCCcc--cc--ccHHHHHHHHHHh--hccceEEEEEcccch
Q 014549 125 LPLLDATDHSVHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYL--CG--QFSGAWKTIAALL--EGIANTGMVELGDIR 197 (423)
Q Consensus 125 ~~~~~~~~~~~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~--C~--~~~p~~~~~A~~l--~~~~~~~~Vdc~~~~ 197 (423)
+|-|||. ..|.+||++||++.| ++..++++.||++||++ |+ .++|..+++|.++ ++.++|++|||+
T Consensus 2 ~~~~~~~----~~v~~lt~~nF~~~v~~~~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d--- 74 (120)
T cd03065 2 FPEYDGK----DRVIDLNEKNYKQVLKKYDVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSK--- 74 (120)
T ss_pred CcccCCC----cceeeCChhhHHHHHHhCCceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCC---
Confidence 4556665 247999999999988 55667777888888865 99 8888888888877 667999999999
Q ss_pred hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 198 LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 198 ~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+..||++|+ |+++||+++|++|+. . .|.|.++.+.|++|+.+.
T Consensus 75 ~~~~La~~~~------I~~iPTl~lfk~G~~----v-~~~G~~~~~~l~~~l~~~ 118 (120)
T cd03065 75 KDAKVAKKLG------LDEEDSIYVFKDDEV----I-EYDGEFAADTLVEFLLDL 118 (120)
T ss_pred CCHHHHHHcC------CccccEEEEEECCEE----E-EeeCCCCHHHHHHHHHHH
Confidence 4556999999 999999999999975 3 499999999999999864
No 19
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=4.2e-19 Score=147.06 Aligned_cols=102 Identities=14% Similarity=0.325 Sum_probs=88.2
Q ss_pred eeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhh-CCCCcc
Q 014549 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAER-KPIGQI 211 (423)
Q Consensus 137 ~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~-~~~~~~ 211 (423)
.|++|+.++|+.++ +++++++|.||+|||++|+++.|.|+++|+.+++. +.++.|||+.+ ...+|++ ++
T Consensus 2 ~v~~~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~--~~~~~~~~~~---- 75 (109)
T cd02993 2 AVVTLSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGE--QREFAKEELQ---- 75 (109)
T ss_pred cceeccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCcc--chhhHHhhcC----
Confidence 47899999999887 45789999999999999999999999999999875 89999999952 2347764 78
Q ss_pred ccccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHHHH
Q 014549 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDWF 249 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi 249 (423)
|+++||+++|.+|... +..|.|. ++.++|+.|+
T Consensus 76 --v~~~Pti~~f~~~~~~---~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 76 --LKSFPTILFFPKNSRQ---PIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred --CCcCCEEEEEcCCCCC---ceeccCCCCCHHHHHhhC
Confidence 9999999999988653 6689995 9999999985
No 20
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=1.1e-18 Score=142.36 Aligned_cols=100 Identities=24% Similarity=0.462 Sum_probs=89.8
Q ss_pred eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (423)
Q Consensus 138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~ 216 (423)
|.+++.++|++.+ +.+.+++|.||+|||++|+++.|.|+++++.+.+.+.++.+||+ ....+|++++ |++
T Consensus 2 v~~l~~~~~~~~i~~~~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~---~~~~~~~~~~------i~~ 72 (103)
T cd03001 2 VVELTDSNFDKKVLNSDDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD---VHQSLAQQYG------VRG 72 (103)
T ss_pred eEEcCHHhHHHHHhcCCCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc---chHHHHHHCC------CCc
Confidence 6889999999887 55667999999999999999999999999999988999999999 4556999999 999
Q ss_pred ccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 217 LPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 217 ~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
+||+++|.+|... ...|.|.++.++|++|+
T Consensus 73 ~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~~ 102 (103)
T cd03001 73 FPTIKVFGAGKNS---PQDYQGGRTAKAIVSAA 102 (103)
T ss_pred cCEEEEECCCCcc---eeecCCCCCHHHHHHHh
Confidence 9999999988432 56899999999999997
No 21
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.76 E-value=9.9e-19 Score=142.42 Aligned_cols=98 Identities=16% Similarity=0.393 Sum_probs=87.3
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|++||.++|++.+.++ +++|.||++||++|+.+.|.|+++++.+++ .+.++.|||+ ....+|++++ |
T Consensus 2 ~~~l~~~~f~~~~~~~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v 71 (102)
T cd03005 2 VLELTEDNFDHHIAEG-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCT---QHRELCSEFQ------V 71 (102)
T ss_pred eeECCHHHHHHHhhcC-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECC---CChhhHhhcC------C
Confidence 5789999999999655 599999999999999999999999999987 5899999999 4456999999 9
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
.++||+++|++|.. ...|.|.++.++|.+|+
T Consensus 72 ~~~Pt~~~~~~g~~----~~~~~G~~~~~~l~~~i 102 (102)
T cd03005 72 RGYPTLLLFKDGEK----VDKYKGTRDLDSLKEFV 102 (102)
T ss_pred CcCCEEEEEeCCCe----eeEeeCCCCHHHHHhhC
Confidence 99999999998865 46799999999999885
No 22
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.75 E-value=1.2e-18 Score=161.28 Aligned_cols=105 Identities=22% Similarity=0.448 Sum_probs=92.5
Q ss_pred cceeeEeccCCcccccC-----CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC
Q 014549 135 VHAFNVVTSEDFPSIFH-----DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG 209 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v~-----~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~ 209 (423)
.+.|++||++||++.+. .+++|+|+||||||++|+++.|.|+++|+++++.+.++.|||+ .+..+|++++
T Consensus 29 ~~~Vv~Lt~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~---~~~~l~~~~~-- 103 (224)
T PTZ00443 29 ANALVLLNDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT---RALNLAKRFA-- 103 (224)
T ss_pred CCCcEECCHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc---ccHHHHHHcC--
Confidence 35689999999999873 2589999999999999999999999999999998999999999 4556999999
Q ss_pred ccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 210 QIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 210 ~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|+++||+++|.+|.. ...+.|.++.++|.+|+.+.
T Consensus 104 ----I~~~PTl~~f~~G~~----v~~~~G~~s~e~L~~fi~~~ 138 (224)
T PTZ00443 104 ----IKGYPTLLLFDKGKM----YQYEGGDRSTEKLAAFALGD 138 (224)
T ss_pred ----CCcCCEEEEEECCEE----EEeeCCCCCHHHHHHHHHHH
Confidence 999999999998865 22345889999999999877
No 23
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.75 E-value=3.3e-18 Score=171.54 Aligned_cols=224 Identities=13% Similarity=0.186 Sum_probs=142.4
Q ss_pred eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
+|++|+..+|+..| .+.+.++|+||++|||||++|+|.|+++|+.+++. +.+++|||.+.. +..||++++
T Consensus 40 ~ii~Ld~~tf~~~v~~~~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~-N~~lCRef~----- 113 (606)
T KOG1731|consen 40 PIIELDVDTFNAAVFGSRKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEE-NVKLCREFS----- 113 (606)
T ss_pred CeEEeehhhhHHHhcccchhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchh-hhhhHhhcC-----
Confidence 48999999999988 66679999999999999999999999999999864 799999999664 466999999
Q ss_pred cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc---------cCCceeecccchhhhhhhhhc--CCCceE
Q 014549 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL---------KLPRIFYYTKESMGKNFLAKT--GPHKVK 281 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~---------~~p~~~~it~~~~~~~fl~~~--~~~~~~ 281 (423)
|.+|||+++|+++.........+.|.....++.+.+.+.+. ..|..-.+++.+.+....++. ..+.+.
T Consensus 114 -V~~~Ptlryf~~~~~~~~~G~~~~~~~~~~ei~~~l~~~la~~~~~~~~~~WP~f~pl~~~~~~~~l~~~~~~~~~yvA 192 (606)
T KOG1731|consen 114 -VSGYPTLRYFPPDSQNKTDGSDVSGPVIPSEIRDQLIRTLAEEDAQNRYPSWPNFDPLKDTTTLEELDEGISTTANYVA 192 (606)
T ss_pred -CCCCceeeecCCccccCcCCCcccCCcchhhHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcchHHHHhcccccccceeE
Confidence 99999999999986532234466777777888877766532 234333343322222222221 223333
Q ss_pred EEEEecCCCCCchHHHHHHHhcc--ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC---CChhHH
Q 014549 282 VIFFSKTGERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS---FNNSRL 356 (423)
Q Consensus 282 vl~f~~~~~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~---~~~~~l 356 (423)
+ ++... ...+-...+..+. +.+....+ .+.+...+.+ ++....|..++|+++..+++.-.+. .-.+.|
T Consensus 193 i-v~e~~---~s~lg~~~~l~~l~~~~v~vr~~--~d~q~~~~~~-l~~~~~~~~llfrnG~~q~l~~~~~s~~~y~~~I 265 (606)
T KOG1731|consen 193 I-VFETE---PSDLGWANLLNDLPSKQVGVRAR--LDTQNFPLFG-LKPDNFPLALLFRNGEQQPLWPSSSSRSAYVKKI 265 (606)
T ss_pred E-EEecC---CcccHHHHHHhhccCCCcceEEE--ecchhccccc-cCCCCchhhhhhcCCcccccccccccHHHHHHHH
Confidence 3 44322 1222222222222 22332222 2333233444 6777899999999988776542222 223566
Q ss_pred HHHHHhh---ccccCcccccc
Q 014549 357 SEVMEQN---KLQELPQLRSV 374 (423)
Q Consensus 357 ~~fi~~~---~~~~lp~l~~~ 374 (423)
.++|.+. ..++++.++..
T Consensus 266 ~~~lg~~~~a~~pt~~p~~~~ 286 (606)
T KOG1731|consen 266 DDLLGDKNEASGPTLHPITAT 286 (606)
T ss_pred HHHhcCccccCCCCcCccccc
Confidence 6776654 34455555543
No 24
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.75 E-value=3e-18 Score=139.91 Aligned_cols=100 Identities=18% Similarity=0.390 Sum_probs=87.5
Q ss_pred eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|.+|+.++|++.+ +++++++|.||+|||++|+.+.|.|+++++.+++ .+.++++||+++ +++..++ +
T Consensus 2 v~~l~~~~f~~~i~~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~----~~~~~~~------~ 71 (104)
T cd02995 2 VKVVVGKNFDEVVLDSDKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN----DVPSEFV------V 71 (104)
T ss_pred eEEEchhhhHHHHhCCCCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch----hhhhhcc------C
Confidence 7889999999988 5568999999999999999999999999999987 389999999943 3778888 8
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
.++||+++|++|.. .....|.|.++.++|++|+
T Consensus 72 ~~~Pt~~~~~~~~~--~~~~~~~g~~~~~~l~~fi 104 (104)
T cd02995 72 DGFPTILFFPAGDK--SNPIKYEGDRTLEDLIKFI 104 (104)
T ss_pred CCCCEEEEEcCCCc--CCceEccCCcCHHHHHhhC
Confidence 89999999999872 1256899999999999985
No 25
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.74 E-value=3.3e-18 Score=142.16 Aligned_cols=100 Identities=21% Similarity=0.360 Sum_probs=86.5
Q ss_pred eEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 139 NVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 139 ~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
..++.++|.+.+ ..+++|+|.||||||++|+.+.|.|+++++.+.+. +.+++|||+ ....+|++++ |
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d---~~~~l~~~~~------V 77 (111)
T cd02963 7 YSLTFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG---HERRLARKLG------A 77 (111)
T ss_pred heeeHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc---ccHHHHHHcC------C
Confidence 457788888644 36899999999999999999999999999999874 899999999 4456999999 9
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
+++||+++|++|+. ...+.|.++.+.|.+|+.+
T Consensus 78 ~~~Pt~~i~~~g~~----~~~~~G~~~~~~l~~~i~~ 110 (111)
T cd02963 78 HSVPAIVGIINGQV----TFYHDSSFTKQHVVDFVRK 110 (111)
T ss_pred ccCCEEEEEECCEE----EEEecCCCCHHHHHHHHhc
Confidence 99999999998865 4466799999999999865
No 26
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.2e-18 Score=171.96 Aligned_cols=68 Identities=28% Similarity=0.437 Sum_probs=63.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||+||||+++||.+|||+|||+||++||||++++ +.++|++|++||++|+||++|+.||+||+.+
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~ 72 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKKG 72 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhcccc
Confidence 4699999999999999999999999999999999872 6788999999999999999999999999864
No 27
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.73 E-value=3.9e-18 Score=170.29 Aligned_cols=68 Identities=21% Similarity=0.436 Sum_probs=64.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+|+ ++.++|++|++||++|+||++|+.||+||+.+
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~ 72 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHAA 72 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccchh
Confidence 469999999999999999999999999999999986 47789999999999999999999999999864
No 28
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=5.8e-18 Score=143.92 Aligned_cols=103 Identities=18% Similarity=0.286 Sum_probs=93.9
Q ss_pred eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
.+..++..+|++.| +++.|++|.|||+||++|+.+.|..++++.+++|.+++++||.+ .+.+|+.+|+ |+
T Consensus 44 ~~~~~s~~~~~~~Vi~S~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD---~~~ela~~Y~------I~ 114 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINSDVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTD---EHPELAEDYE------IS 114 (150)
T ss_pred cccccCHHHHHHHHHccCCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccc---cccchHhhcc------ee
Confidence 45668888999665 99999999999999999999999999999999999999999999 5566999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+||+++|++|.+ ...+-|..+.+.|.+|+.+.
T Consensus 115 avPtvlvfknGe~----~d~~vG~~~~~~l~~~i~k~ 147 (150)
T KOG0910|consen 115 AVPTVLVFKNGEK----VDRFVGAVPKEQLRSLIKKF 147 (150)
T ss_pred eeeEEEEEECCEE----eeeecccCCHHHHHHHHHHH
Confidence 9999999999987 45788999999999999887
No 29
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.72 E-value=7e-18 Score=169.87 Aligned_cols=104 Identities=15% Similarity=0.338 Sum_probs=91.4
Q ss_pred ceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 136 HAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 136 ~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
++|..|-.+||++++ ++++-+||+|||||||||++++|+|+++|+.+++. +.||++|.+.|.. ....
T Consensus 366 ~pVkvvVgknfd~iv~de~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~-----~~~~----- 435 (493)
T KOG0190|consen 366 SPVKVVVGKNFDDIVLDEGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV-----PSLK----- 435 (493)
T ss_pred CCeEEEeecCHHHHhhccccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC-----cccc-----
Confidence 459999999999998 88999999999999999999999999999999985 7999999995532 1123
Q ss_pred cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 213 FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|.+||||++|+.|.+ +++..|+|.|+.+++..|+.+.
T Consensus 436 -~~~fPTI~~~pag~k--~~pv~y~g~R~le~~~~fi~~~ 472 (493)
T KOG0190|consen 436 -VDGFPTILFFPAGHK--SNPVIYNGDRTLEDLKKFIKKS 472 (493)
T ss_pred -ccccceEEEecCCCC--CCCcccCCCcchHHHHhhhccC
Confidence 789999999999974 3578999999999999999776
No 30
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.72 E-value=1.3e-17 Score=136.21 Aligned_cols=101 Identities=21% Similarity=0.347 Sum_probs=89.8
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
|++|++.+|++.+..+++++|.||++||++|+++.|.++++++.+. +.+.++.+||+++ ....+|++++ |+
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~------i~ 74 (104)
T cd02997 2 VVHLTDEDFRKFLKKEKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKP-EHDALKEEYN------VK 74 (104)
T ss_pred eEEechHhHHHHHhhCCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCC-ccHHHHHhCC------Cc
Confidence 6889999999999888899999999999999999999999999987 5578999999952 2566999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
++||+++|++|+. ...|.|..+.+.+++|+
T Consensus 75 ~~Pt~~~~~~g~~----~~~~~g~~~~~~l~~~l 104 (104)
T cd02997 75 GFPTFKYFENGKF----VEKYEGERTAEDIIEFM 104 (104)
T ss_pred cccEEEEEeCCCe----eEEeCCCCCHHHHHhhC
Confidence 9999999999875 45899999999999885
No 31
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.71 E-value=2.4e-17 Score=132.98 Aligned_cols=92 Identities=14% Similarity=0.270 Sum_probs=81.5
Q ss_pred Cccccc-CC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 145 DFPSIF-HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 145 nf~~~v-~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
+|++.| ++ +++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+ ....+|++++ |.++||+++
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~---~~~~l~~~~~------i~~~Pt~~~ 72 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCD---AQPQIAQQFG------VQALPTVYL 72 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEecc---CCHHHHHHcC------CCCCCEEEE
Confidence 677677 34 679999999999999999999999999999888899999999 5566999999 999999999
Q ss_pred eCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 223 FPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 223 f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
|.+|+. ...|.|..+.+.|.+|+
T Consensus 73 ~~~g~~----~~~~~g~~~~~~l~~~l 95 (96)
T cd02956 73 FAAGQP----VDGFQGAQPEEQLRQML 95 (96)
T ss_pred EeCCEE----eeeecCCCCHHHHHHHh
Confidence 998865 35789999999999986
No 32
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=99.71 E-value=8.9e-16 Score=145.76 Aligned_cols=228 Identities=17% Similarity=0.235 Sum_probs=152.5
Q ss_pred cCCCCCCCCCCCcceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHH-------HHHHHHhhcc-ceEEEEEcc
Q 014549 123 IDLPLLDATDHSVHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW-------KTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 123 ~~~~~~~~~~~~~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~-------~~~A~~l~~~-~~~~~Vdc~ 194 (423)
..||-|+|.+. |++||.+||+++++..+..+|.||.|-- .-+.....| +-+|+-++.. +.||.||..
T Consensus 25 LefP~YDGkDR----Vi~LneKNfk~~lKkyd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~ 99 (383)
T PF01216_consen 25 LEFPEYDGKDR----VIDLNEKNFKRALKKYDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSK 99 (383)
T ss_dssp -SSSS-SSS------CEEE-TTTHHHHHHH-SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETT
T ss_pred cCCccCCCccc----eEEcchhHHHHHHHhhcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccH
Confidence 35788888744 7999999999999999999999999874 334443334 2235555554 799999999
Q ss_pred cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhh
Q 014549 195 DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAK 274 (423)
Q Consensus 195 ~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~ 274 (423)
+...|++++| +...++|.+|..|.. +.|.|.++++.|++|+...+. -| +.+|++...+..|..-
T Consensus 100 ---Kd~klAKKLg------v~E~~SiyVfkd~~~-----IEydG~~saDtLVeFl~dl~e-dP-VeiIn~~~e~~~Fe~i 163 (383)
T PF01216_consen 100 ---KDAKLAKKLG------VEEEGSIYVFKDGEV-----IEYDGERSADTLVEFLLDLLE-DP-VEIINNKHELKAFERI 163 (383)
T ss_dssp ---TTHHHHHHHT--------STTEEEEEETTEE-----EEE-S--SHHHHHHHHHHHHS-SS-EEEE-SHHHHHHHHH-
T ss_pred ---HHHHHHHhcC------ccccCcEEEEECCcE-----EEecCccCHHHHHHHHHHhcc-cc-hhhhcChhhhhhhhhc
Confidence 5566999999 889999999999975 599999999999999999833 33 3345554434555542
Q ss_pred cCCCceEEE-EEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CC
Q 014549 275 TGPHKVKVI-FFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FN 352 (423)
Q Consensus 275 ~~~~~~~vl-~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~ 352 (423)
. + .+.|+ +|.+........+..+|..|..+++|..+. .+.++++++++ ...|-+|++....|+...|+ .+
T Consensus 164 e-d-~~klIGyFk~~~s~~yk~FeeAAe~F~p~IkFfAtf-----d~~vAk~L~lK-~nev~fyepF~~~pi~ip~~p~~ 235 (383)
T PF01216_consen 164 E-D-DIKLIGYFKSEDSEHYKEFEEAAEHFQPYIKFFATF-----DKKVAKKLGLK-LNEVDFYEPFMDEPITIPGKPYT 235 (383)
T ss_dssp --S-S-EEEEE-SSTTSHHHHHHHHHHHHCTTTSEEEEE------SHHHHHHHT-S-TT-EEEE-TTSSSEEEESSSS--
T ss_pred c-c-ceeEEEEeCCCCcHHHHHHHHHHHhhcCceeEEEEe-----cchhhhhcCcc-ccceeeeccccCCCccCCCCCCC
Confidence 2 1 25555 565432112233455899999999988774 45699999996 77899999999999988665 57
Q ss_pred hhHHHHHHHhhccccCccccccccccc
Q 014549 353 NSRLSEVMEQNKLQELPQLRSVTSMEL 379 (423)
Q Consensus 353 ~~~l~~fi~~~~~~~lp~l~~~~~~~~ 379 (423)
...|.+||++|+.|++.+++..+++..
T Consensus 236 e~e~~~fi~~h~rptlrkl~~~~m~e~ 262 (383)
T PF01216_consen 236 EEELVEFIEEHKRPTLRKLRPEDMFET 262 (383)
T ss_dssp HHHHHHHHHHT-S-SEEE--GGGHHHH
T ss_pred HHHHHHHHHHhchhHhhhCChhhhhhh
Confidence 789999999999999999999999876
No 33
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.71 E-value=2.5e-17 Score=133.83 Aligned_cols=99 Identities=23% Similarity=0.401 Sum_probs=89.5
Q ss_pred eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (423)
Q Consensus 141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P 218 (423)
|+.++|++.+.++++++|.||++||++|+.+.|.|+++++.+++ .+.++.+||+ ....+|++++ |.++|
T Consensus 1 l~~~~~~~~~~~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~~~~~~------i~~~P 71 (102)
T TIGR01126 1 LTASNFDDIVLSNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDAT---AEKDLASRFG------VSGFP 71 (102)
T ss_pred CchhhHHHHhccCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEcc---chHHHHHhCC------CCcCC
Confidence 56788998888899999999999999999999999999999988 5899999999 5566999999 99999
Q ss_pred EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 219 SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 219 ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
++.+|.+|+. +..|.|.++.+.|..|+.+.
T Consensus 72 ~~~~~~~~~~----~~~~~g~~~~~~l~~~i~~~ 101 (102)
T TIGR01126 72 TIKFFPKGKK----PVDYEGGRDLEAIVEFVNEK 101 (102)
T ss_pred EEEEecCCCc----ceeecCCCCHHHHHHHHHhc
Confidence 9999999864 45899999999999999764
No 34
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.71 E-value=2.8e-17 Score=134.31 Aligned_cols=101 Identities=20% Similarity=0.394 Sum_probs=88.2
Q ss_pred eeEeccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVTSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|.+||+++|++.+. ++++++|.||++||++|+++.|.|+++++.++ +.+.++.+||+++ ...+|++++ |
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~--~~~~~~~~~------i 73 (105)
T cd02998 2 VVELTDSNFDKVVGDDKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEA--NKDLAKKYG------V 73 (105)
T ss_pred eEEcchhcHHHHhcCCCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCc--chhhHHhCC------C
Confidence 67899999999884 45699999999999999999999999999997 4589999999941 566999999 9
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
.++|++++|.+|... ...|.|.++.++|.+|+
T Consensus 74 ~~~P~~~~~~~~~~~---~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 74 SGFPTLKFFPKGSTE---PVKYEGGRDLEDLVKFV 105 (105)
T ss_pred CCcCEEEEEeCCCCC---ccccCCccCHHHHHhhC
Confidence 999999999988542 56899999999999985
No 35
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.70 E-value=3.5e-17 Score=133.37 Aligned_cols=84 Identities=13% Similarity=0.279 Sum_probs=74.7
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKS 229 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~ 229 (423)
..+++++|.||||||++|+.+.|.|+++++.+.+ +.+++||++ ++ ..++++++ |+++||+++|.+| .
T Consensus 16 ~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~~~---~~l~~~~~------V~~~PT~~lf~~g-~- 83 (100)
T cd02999 16 NREDYTAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESSIK---PSLLSRYG------VVGFPTILLFNST-P- 83 (100)
T ss_pred cCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCCCC---HHHHHhcC------CeecCEEEEEcCC-c-
Confidence 4689999999999999999999999999999876 678889987 33 45999999 9999999999988 3
Q ss_pred CCCcccccCCCCHHHHHHHH
Q 014549 230 SDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 230 ~~~~~~y~G~~~~~~l~~fi 249 (423)
...|.|.++.++|++|+
T Consensus 84 ---~~~~~G~~~~~~l~~f~ 100 (100)
T cd02999 84 ---RVRYNGTRTLDSLAAFY 100 (100)
T ss_pred ---eeEecCCCCHHHHHhhC
Confidence 46899999999999985
No 36
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.5e-17 Score=154.36 Aligned_cols=103 Identities=17% Similarity=0.282 Sum_probs=95.1
Q ss_pred eeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 137 AFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 137 ~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.|.++|..||...| +...|+||.||+|||++|+++.|..++++.+.+|.+++++|||+ .++.++.+||
T Consensus 24 ~I~dvT~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D---~~p~vAaqfg------ 94 (304)
T COG3118 24 GIKDVTEANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCD---AEPMVAAQFG------ 94 (304)
T ss_pred cceechHhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCC---cchhHHHHhC------
Confidence 37999999999877 44569999999999999999999999999999999999999999 5566999999
Q ss_pred ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|++.||+++|.+|+. ...|.|....+.|.+|+.+.
T Consensus 95 iqsIPtV~af~dGqp----VdgF~G~qPesqlr~~ld~~ 129 (304)
T COG3118 95 VQSIPTVYAFKDGQP----VDGFQGAQPESQLRQFLDKV 129 (304)
T ss_pred cCcCCeEEEeeCCcC----ccccCCCCcHHHHHHHHHHh
Confidence 999999999999987 57899999999999999988
No 37
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.70 E-value=5.6e-17 Score=135.40 Aligned_cols=103 Identities=24% Similarity=0.420 Sum_probs=85.7
Q ss_pred eeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 138 FNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 138 v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
|++|+.++|++.+ +++++++|.||+|||++|+.+.|.|+++++.+++ .+.++.|||+.+. ...+|++++
T Consensus 3 v~~l~~~~f~~~i~~~~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~-~~~~~~~~~------ 75 (114)
T cd02992 3 VIVLDAASFNSALLGSPSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEE-NVALCRDFG------ 75 (114)
T ss_pred eEECCHHhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchh-hHHHHHhCC------
Confidence 7899999999988 4457999999999999999999999999999864 4799999997442 456999999
Q ss_pred ccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHH
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTD 247 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~ 247 (423)
|+++||+++|++|.........|+|. |..+.+.+
T Consensus 76 i~~~Pt~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02992 76 VTGYPTLRYFPPFSKEATDGLKQEGPERDVNELRE 110 (114)
T ss_pred CCCCCEEEEECCCCccCCCCCcccCCccCHHHHHH
Confidence 99999999999997643344678876 76666643
No 38
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.70 E-value=1.6e-17 Score=167.56 Aligned_cols=68 Identities=28% Similarity=0.473 Sum_probs=64.1
Q ss_pred CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
...|||++|||+++||.+|||+|||+||++||||+++ +.++|++|++||++|+||++|+.||.||+.+
T Consensus 26 ~~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~-~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~ 93 (421)
T PTZ00037 26 DNEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGG-DPEKFKEISRAYEVLSDPEKRKIYDEYGEEG 93 (421)
T ss_pred cchhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCc-hHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence 3679999999999999999999999999999999985 5789999999999999999999999999864
No 39
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=4.8e-17 Score=144.79 Aligned_cols=92 Identities=23% Similarity=0.311 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCC------cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHH
Q 014549 13 YWAPLILFGLGLFYQLVVLPRSF------PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYA 83 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~------~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~A 83 (423)
.+..+.+.++|+++++++.-.+. .-|||+|||++++++.+|||+|||+|++++||||++ +.++.|..|.+|
T Consensus 69 ~~~~i~lv~~W~v~~fL~y~i~~~~~~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KA 148 (230)
T KOG0721|consen 69 TKRKVFLVVGWAVIAFLIYKIMNSRRERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKA 148 (230)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHH
Confidence 44566667777765554433322 669999999999999999999999999999999985 467789999999
Q ss_pred HHHcCChhhHhhhhhcCCchh
Q 014549 84 YELLTDPLWKRNYDVYGIDEQ 104 (423)
Q Consensus 84 y~~L~~~~~r~~yd~~~~~~~ 104 (423)
|+.|+|+..|++|+.||+.++
T Consensus 149 Y~aLTD~~sreN~ekYG~PDG 169 (230)
T KOG0721|consen 149 YQALTDKKSRENWEKYGNPDG 169 (230)
T ss_pred HHHhcchhhHHHHHHhCCCCC
Confidence 999999999999999998653
No 40
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.69 E-value=3.9e-17 Score=165.47 Aligned_cols=107 Identities=11% Similarity=0.289 Sum_probs=91.8
Q ss_pred cceeeEeccCCcccccC---CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCc
Q 014549 135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQ 210 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v~---~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~ 210 (423)
...|++||..||+++|. .+++|||.||||||++|+.+.|.|+++|+++.+. +.|++|||+.+.. ..++++++
T Consensus 350 ~~~Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~-~~~~~~~~--- 425 (463)
T TIGR00424 350 SNNVVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQK-EFAKQELQ--- 425 (463)
T ss_pred CCCeEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCcc-HHHHHHcC---
Confidence 34689999999999884 7899999999999999999999999999999876 7999999995421 22357888
Q ss_pred cccccCccEEEEeCCCCCCCCCccccc-CCCCHHHHHHHHHH
Q 014549 211 IFFRRGLPSLVAFPPGCKSSDCMTRFE-GELSVDAVTDWFAT 251 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~-G~~~~~~l~~fi~~ 251 (423)
|+++|||++|++|... +..|. |.|+.++|+.|+..
T Consensus 426 ---I~~~PTii~Fk~g~~~---~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 426 ---LGSFPTILFFPKHSSR---PIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred ---CCccceEEEEECCCCC---ceeCCCCCCCHHHHHHHHHh
Confidence 9999999999999643 56898 58999999999964
No 41
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.2e-17 Score=165.05 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=63.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+++ .+.++|++|++||++|+||++|+.||+||+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (372)
T PRK14286 3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG 73 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence 469999999999999999999999999999999986 36789999999999999999999999999865
No 42
>PRK09381 trxA thioredoxin; Provisional
Probab=99.69 E-value=7.5e-17 Score=133.31 Aligned_cols=103 Identities=17% Similarity=0.266 Sum_probs=91.0
Q ss_pred eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
.|++++.++|++.+ +.+++++|.||+|||++|+.+.|.|+++++.+.+.+.++.|||+. ...++++++ |+
T Consensus 4 ~v~~~~~~~~~~~v~~~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~---~~~~~~~~~------v~ 74 (109)
T PRK09381 4 KIIHLTDDSFDTDVLKADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ---NPGTAPKYG------IR 74 (109)
T ss_pred cceeeChhhHHHHHhcCCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC---ChhHHHhCC------CC
Confidence 37889999999754 778899999999999999999999999999998889999999994 455899999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
++||+++|.+|+. ...+.|..+.+.|..|+.+.
T Consensus 75 ~~Pt~~~~~~G~~----~~~~~G~~~~~~l~~~i~~~ 107 (109)
T PRK09381 75 GIPTLLLFKNGEV----AATKVGALSKGQLKEFLDAN 107 (109)
T ss_pred cCCEEEEEeCCeE----EEEecCCCCHHHHHHHHHHh
Confidence 9999999998865 34677999999999999775
No 43
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.69 E-value=2.1e-17 Score=166.18 Aligned_cols=67 Identities=24% Similarity=0.409 Sum_probs=62.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 102 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||++|+.||+||+.
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 4799999999999999999999999999999999873 568899999999999999999999999864
No 44
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.68 E-value=3.9e-17 Score=163.16 Aligned_cols=68 Identities=31% Similarity=0.592 Sum_probs=63.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||++|+.||+||+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~ 72 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD 72 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence 469999999999999999999999999999999986 46789999999999999999999999999864
No 45
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.68 E-value=1.5e-15 Score=140.99 Aligned_cols=195 Identities=11% Similarity=0.092 Sum_probs=127.1
Q ss_pred CcccccCCCCcEEEEEec---CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 145 DFPSIFHDSKPWLIQVYS---DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 145 nf~~~v~~~~~~lV~FYa---pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
.|.+.+.+ ...++.|++ +||++|+.+.|.++++|+.+.+. +.+..+|.+ ...+++++|+ |.++||+
T Consensus 12 ~~~~~~~~-~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~---~~~~l~~~~~------V~~~Pt~ 81 (215)
T TIGR02187 12 LFLKELKN-PVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTP---EDKEEAEKYG------VERVPTT 81 (215)
T ss_pred HHHHhcCC-CeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCc---ccHHHHHHcC------CCccCEE
Confidence 33333433 444677988 99999999999999999998542 345555555 3556999999 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEE-EEecC-CCCC--chHH
Q 014549 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVI-FFSKT-GERA--SPFV 296 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl-~f~~~-~~~~--~~~~ 296 (423)
++|.+|... ...|.|..+.+.+.+|+.......+....++... .+. ++..+ +.+.|+ |+++. ..|. .+.+
T Consensus 82 ~~f~~g~~~---~~~~~G~~~~~~l~~~i~~~~~~~~~~~~L~~~~-~~~-l~~~~-~pv~I~~F~a~~C~~C~~~~~~l 155 (215)
T TIGR02187 82 IILEEGKDG---GIRYTGIPAGYEFAALIEDIVRVSQGEPGLSEKT-VEL-LQSLD-EPVRIEVFVTPTCPYCPYAVLMA 155 (215)
T ss_pred EEEeCCeee---EEEEeecCCHHHHHHHHHHHHHhcCCCCCCCHHH-HHH-HHhcC-CCcEEEEEECCCCCCcHHHHHHH
Confidence 999998652 2478899888999999976621111111132211 222 22222 123344 55542 2332 3445
Q ss_pred HHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 297 RQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 297 ~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..++..+ ..+.+..+... ..++++++|+|.+.||+++++++. .+.|..+.+.|.+||..
T Consensus 156 ~~l~~~~-~~i~~~~vD~~--~~~~~~~~~~V~~vPtl~i~~~~~----~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 156 HKFALAN-DKILGEMIEAN--ENPDLAEKYGVMSVPKIVINKGVE----EFVGAYPEEQFLEYILS 214 (215)
T ss_pred HHHHHhc-CceEEEEEeCC--CCHHHHHHhCCccCCEEEEecCCE----EEECCCCHHHHHHHHHh
Confidence 5555553 34555554422 247899999999999999986542 26788888899999864
No 46
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.67 E-value=2.1e-16 Score=129.66 Aligned_cols=94 Identities=16% Similarity=0.385 Sum_probs=80.5
Q ss_pred CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
++|+++ .++++++|.||+|||++|+.+.|.|+++++.+++ .+.++.+||+ ....+|++++ |+++||+
T Consensus 7 ~~~~~~-~~~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------I~~~Pt~ 76 (104)
T cd03000 7 DSFKDV-RKEDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDAT---AYSSIASEFG------VRGYPTI 76 (104)
T ss_pred hhhhhh-ccCCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECc---cCHhHHhhcC------CccccEE
Confidence 677764 4577999999999999999999999999999854 3789999999 4456999999 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
++|.+|. ...|.|.++.+.|.+|+.+.
T Consensus 77 ~l~~~~~-----~~~~~G~~~~~~l~~~~~~~ 103 (104)
T cd03000 77 KLLKGDL-----AYNYRGPRTKDDIVEFANRV 103 (104)
T ss_pred EEEcCCC-----ceeecCCCCHHHHHHHHHhh
Confidence 9997663 34789999999999999764
No 47
>PHA02278 thioredoxin-like protein
Probab=99.67 E-value=7.6e-17 Score=131.76 Aligned_cols=95 Identities=9% Similarity=0.127 Sum_probs=81.1
Q ss_pred CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++|.+.+.++++++|.|||||||+|+.++|.++++++.+.+.+.|..||.++++. ...++++++ |+++||+++
T Consensus 5 ~~~~~~i~~~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~------I~~iPT~i~ 78 (103)
T PHA02278 5 VDLNTAIRQKKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFD------IMSTPVLIG 78 (103)
T ss_pred HHHHHHHhCCCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCC------CccccEEEE
Confidence 4677888889999999999999999999999999998876667899999995421 245999999 999999999
Q ss_pred eCCCCCCCCCcccccCCCCHHHHHHH
Q 014549 223 FPPGCKSSDCMTRFEGELSVDAVTDW 248 (423)
Q Consensus 223 f~~g~~~~~~~~~y~G~~~~~~l~~f 248 (423)
|++|+. .....|..+.+.|.++
T Consensus 79 fk~G~~----v~~~~G~~~~~~l~~~ 100 (103)
T PHA02278 79 YKDGQL----VKKYEDQVTPMQLQEL 100 (103)
T ss_pred EECCEE----EEEEeCCCCHHHHHhh
Confidence 999976 4577898888888775
No 48
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=5.8e-17 Score=162.11 Aligned_cols=68 Identities=29% Similarity=0.524 Sum_probs=63.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+++ .+.++|++|++||++|+||++|+.||+||+.+
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 73 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG 73 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence 469999999999999999999999999999999986 46789999999999999999999999999864
No 49
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.67 E-value=1e-16 Score=129.10 Aligned_cols=98 Identities=22% Similarity=0.459 Sum_probs=86.9
Q ss_pred EeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHh--hccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 140 VVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 140 ~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
+||.++|.+.+.+.++++|.||++||++|+.+.|.|+++++.+ .+.+.++.|||+ ....+|++++ |+++
T Consensus 2 ~l~~~~~~~~i~~~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~------i~~~ 72 (101)
T cd02961 2 ELTDDNFDELVKDSKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCT---ANNDLCSEYG------VRGY 72 (101)
T ss_pred cccHHHHHHHHhCCCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeecc---chHHHHHhCC------CCCC
Confidence 5788899999977779999999999999999999999999999 467899999999 4556999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
||+++|.++... ...|.|..+.+.|.+|+
T Consensus 73 Pt~~~~~~~~~~---~~~~~g~~~~~~i~~~~ 101 (101)
T cd02961 73 PTIKLFPNGSKE---PVKYEGPRTLESLVEFI 101 (101)
T ss_pred CEEEEEcCCCcc---cccCCCCcCHHHHHhhC
Confidence 999999988332 56899999999999884
No 50
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.67 E-value=6.6e-17 Score=162.12 Aligned_cols=68 Identities=32% Similarity=0.560 Sum_probs=64.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+++ .+.++|++|++||++|+||++|+.||+||+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~ 72 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG 72 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence 469999999999999999999999999999999986 47789999999999999999999999999865
No 51
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=7e-17 Score=161.92 Aligned_cols=68 Identities=25% Similarity=0.479 Sum_probs=64.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||+||+.+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g 73 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG 73 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence 569999999999999999999999999999999986 57789999999999999999999999999764
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=99.66 E-value=1.4e-16 Score=161.37 Aligned_cols=107 Identities=14% Similarity=0.396 Sum_probs=92.5
Q ss_pred CcceeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc-cchhhhHHHh-hCC
Q 014549 134 SVHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG-DIRLATHLAE-RKP 207 (423)
Q Consensus 134 ~~~~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~-~~~~~~~l~~-~~~ 207 (423)
+...|++|+.+||++++ +.+++|||.||||||++|+.+.|.|+++|+.+.+. +.|++|||+ .+. .+|+ +++
T Consensus 343 ~~~~Vv~Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~---~la~~~~~ 419 (457)
T PLN02309 343 NSQNVVALSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQK---EFAKQELQ 419 (457)
T ss_pred CCCCcEECCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcch---HHHHhhCC
Confidence 33468999999999887 57899999999999999999999999999999876 899999999 433 4775 588
Q ss_pred CCccccccCccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHHHHh
Q 014549 208 IGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWFATA 252 (423)
Q Consensus 208 ~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi~~~ 252 (423)
|++||||++|++|... +..|.| .|+.++|+.|+...
T Consensus 420 ------I~~~PTil~f~~g~~~---~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 420 ------LGSFPTILLFPKNSSR---PIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred ------CceeeEEEEEeCCCCC---eeecCCCCcCHHHHHHHHHHh
Confidence 9999999999998653 678985 79999999999753
No 53
>PRK10996 thioredoxin 2; Provisional
Probab=99.66 E-value=1.9e-16 Score=136.91 Aligned_cols=102 Identities=20% Similarity=0.337 Sum_probs=92.6
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
+++++..+|+++++++++++|.||++||++|+.+.|.++++++++.+.+.+++||++ ....++++++ |+++
T Consensus 37 ~i~~~~~~~~~~i~~~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~---~~~~l~~~~~------V~~~ 107 (139)
T PRK10996 37 VINATGETLDKLLQDDLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTE---AERELSARFR------IRSI 107 (139)
T ss_pred CEEcCHHHHHHHHhCCCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCC---CCHHHHHhcC------CCcc
Confidence 688999999999988999999999999999999999999999999888999999999 4456999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
||+++|.+|+. ...+.|..+.+.|.+|+.+.
T Consensus 108 Ptlii~~~G~~----v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 108 PTIMIFKNGQV----VDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred CEEEEEECCEE----EEEEcCCCCHHHHHHHHHHh
Confidence 99999998875 45778999999999999765
No 54
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=9.8e-17 Score=160.37 Aligned_cols=68 Identities=29% Similarity=0.583 Sum_probs=63.3
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||++|+.||+||..+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~ 74 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG 74 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence 4699999999999999999999999999999999863 4678999999999999999999999999764
No 55
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=8.5e-17 Score=160.37 Aligned_cols=68 Identities=26% Similarity=0.445 Sum_probs=63.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+|+++||||++++ +.++|++|++||++|+||.+|..||+||+.+
T Consensus 2 ~~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~ 72 (365)
T PRK14285 2 KRDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHTA 72 (365)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcch
Confidence 3699999999999999999999999999999999873 5678999999999999999999999999864
No 56
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.1e-16 Score=160.28 Aligned_cols=68 Identities=29% Similarity=0.516 Sum_probs=64.0
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||+||+.+
T Consensus 3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 72 (376)
T PRK14280 3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG 72 (376)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence 369999999999999999999999999999999986 47789999999999999999999999999865
No 57
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.66 E-value=1.2e-16 Score=154.63 Aligned_cols=68 Identities=29% Similarity=0.536 Sum_probs=63.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++||.+|||+|||+||++||||+++ .+.++|++|++||++|+||++|+.||+||..+
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~ 72 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTA 72 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCcc
Confidence 469999999999999999999999999999999986 46789999999999999999999999999864
No 58
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.3e-16 Score=160.16 Aligned_cols=68 Identities=26% Similarity=0.536 Sum_probs=63.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+|+ .+.++|++|++||++|+||.+|+.||.||+.+
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~ 71 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA 71 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence 469999999999999999999999999999999986 46789999999999999999999999999864
No 59
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.4e-16 Score=159.12 Aligned_cols=68 Identities=29% Similarity=0.502 Sum_probs=63.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||+||+.+
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g 73 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG 73 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence 4799999999999999999999999999999999873 5678999999999999999999999999864
No 60
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.1e-16 Score=147.20 Aligned_cols=70 Identities=30% Similarity=0.501 Sum_probs=64.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 105 (423)
..|+|+|||++++|+.++|||+||+|+++||||++++ +.++|++|++||+||+||.+|..||+||+.+..
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~ 102 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGLK 102 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHH
Confidence 4579999999999999999999999999999999874 788999999999999999999999999887643
No 61
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.65 E-value=1.5e-16 Score=159.39 Aligned_cols=66 Identities=29% Similarity=0.430 Sum_probs=62.6
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 102 (423)
.|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||++|+.||+||+.
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 699999999999999999999999999999999874 667899999999999999999999999975
No 62
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=5.3e-17 Score=158.56 Aligned_cols=70 Identities=26% Similarity=0.404 Sum_probs=63.8
Q ss_pred CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549 33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGID 102 (423)
Q Consensus 33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 102 (423)
++....||++|||.++|+..+||++||+||++||||+||+ +.+.|+.|+.||+|||||..|..||.+.++
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq 77 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ 77 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence 3446789999999999999999999999999999999883 677899999999999999999999997653
No 63
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.6e-16 Score=159.67 Aligned_cols=68 Identities=28% Similarity=0.556 Sum_probs=63.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||.||+.+
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~ 74 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA 74 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence 3699999999999999999999999999999999873 5678999999999999999999999999764
No 64
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.5e-16 Score=158.98 Aligned_cols=68 Identities=25% Similarity=0.464 Sum_probs=63.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||+||+.+
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g 73 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG 73 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence 4699999999999999999999999999999999873 5678999999999999999999999999864
No 65
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.64 E-value=1.6e-16 Score=159.44 Aligned_cols=68 Identities=28% Similarity=0.562 Sum_probs=63.5
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||+||+.+
T Consensus 3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~ 73 (380)
T PRK14297 3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD 73 (380)
T ss_pred CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence 3699999999999999999999999999999999873 5678999999999999999999999999864
No 66
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.64 E-value=3.6e-16 Score=128.14 Aligned_cols=96 Identities=11% Similarity=0.064 Sum_probs=79.6
Q ss_pred cCCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 143 SEDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 143 ~~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
.++|++.|. .+++++|.|||+||++|+.+.|.++++++.+ +.+.|+.||++++.....++++++ |+++||+
T Consensus 3 ~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~------V~~~Pt~ 75 (103)
T cd02985 3 VEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREK------IIEVPHF 75 (103)
T ss_pred HHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcC------CCcCCEE
Confidence 456777773 3899999999999999999999999999998 568999999997654457999999 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHH
Q 014549 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFA 250 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~ 250 (423)
++|++|+. ...+.|. ..+.|..-+.
T Consensus 76 ~~~~~G~~----v~~~~G~-~~~~l~~~~~ 100 (103)
T cd02985 76 LFYKDGEK----IHEEEGI-GPDELIGDVL 100 (103)
T ss_pred EEEeCCeE----EEEEeCC-CHHHHHHHHH
Confidence 99999876 4577784 4566666554
No 67
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.63 E-value=2.3e-16 Score=158.73 Aligned_cols=67 Identities=31% Similarity=0.548 Sum_probs=62.8
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||++|+.||+||+.+
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g 70 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG 70 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence 389999999999999999999999999999999873 5778999999999999999999999999864
No 68
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.63 E-value=3.5e-16 Score=116.67 Aligned_cols=60 Identities=35% Similarity=0.697 Sum_probs=56.7
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChH----HHHHHHHHHHHHcCChhhHhhhh
Q 014549 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPST----ADFLKIQYAYELLTDPLWKRNYD 97 (423)
Q Consensus 38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~----~~f~~i~~Ay~~L~~~~~r~~yd 97 (423)
|||++|||+++++.++||++|+++++++|||++++.. +.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987544 78999999999999999999998
No 69
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=3.6e-16 Score=157.04 Aligned_cols=68 Identities=24% Similarity=0.488 Sum_probs=63.1
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC---ChHHHHHHHHHHHHHcCChhhHhhhhh----cCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI---PSTADFLKIQYAYELLTDPLWKRNYDV----YGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~---~~~~~f~~i~~Ay~~L~~~~~r~~yd~----~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||+++ .+.++|++|++||++|+||.+|+.||+ ||+.+
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g 82 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGG 82 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccc
Confidence 469999999999999999999999999999999986 366889999999999999999999999 88754
No 70
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4e-16 Score=157.20 Aligned_cols=67 Identities=25% Similarity=0.519 Sum_probs=63.0
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++|+.+|||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||.||+.+
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~ 72 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG 72 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence 699999999999999999999999999999999873 5678999999999999999999999999864
No 71
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.62 E-value=4.7e-16 Score=155.76 Aligned_cols=68 Identities=31% Similarity=0.575 Sum_probs=63.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||.||+.+
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~ 73 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA 73 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence 4699999999999999999999999999999999863 5678999999999999999999999999764
No 72
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.61 E-value=3.1e-16 Score=129.49 Aligned_cols=76 Identities=14% Similarity=0.104 Sum_probs=68.3
Q ss_pred CCcccccC--CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549 144 EDFPSIFH--DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 144 ~nf~~~v~--~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
++|++.+. ++++++|.|||+||++|+.|.|.++++|.++.+.+.|++||++ ..++++++++ |.+.||++
T Consensus 3 ~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD---~~~~la~~~~------V~~iPTf~ 73 (114)
T cd02954 3 WAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDID---EVPDFNKMYE------LYDPPTVM 73 (114)
T ss_pred HHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECC---CCHHHHHHcC------CCCCCEEE
Confidence 45666663 6789999999999999999999999999999988999999999 4556999999 99999999
Q ss_pred EeCCCCC
Q 014549 222 AFPPGCK 228 (423)
Q Consensus 222 ~f~~g~~ 228 (423)
+|++|+.
T Consensus 74 ~fk~G~~ 80 (114)
T cd02954 74 FFFRNKH 80 (114)
T ss_pred EEECCEE
Confidence 9999976
No 73
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.61 E-value=6e-16 Score=148.67 Aligned_cols=68 Identities=28% Similarity=0.601 Sum_probs=63.9
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+..|||+||++||++||||.|. ++.++|++|.+|||+|+|+++|..||.+|..+
T Consensus 42 ~~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 42 KEDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred CcchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 449999999999999999999999999999999876 58889999999999999999999999998875
No 74
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.61 E-value=1.5e-15 Score=124.47 Aligned_cols=96 Identities=15% Similarity=0.103 Sum_probs=85.5
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
.-++|..||++.+..+...+|.||++| |++|+.+.|.++++|+++.+.+.|++||+++ ++.++.+|+ |+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~---~~~la~~f~------V~ 82 (111)
T cd02965 12 WPRVDAATLDDWLAAGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD---EQALAARFG------VL 82 (111)
T ss_pred CcccccccHHHHHhCCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC---CHHHHHHcC------CC
Confidence 356899999999999999999999997 9999999999999999999999999999994 456999999 99
Q ss_pred CccEEEEeCCCCCCCCCcccccCCCCHHHHH
Q 014549 216 GLPSLVAFPPGCKSSDCMTRFEGELSVDAVT 246 (423)
Q Consensus 216 ~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~ 246 (423)
++||+++|++|+. ...+.|..+.+.+.
T Consensus 83 sIPTli~fkdGk~----v~~~~G~~~~~e~~ 109 (111)
T cd02965 83 RTPALLFFRDGRY----VGVLAGIRDWDEYV 109 (111)
T ss_pred cCCEEEEEECCEE----EEEEeCccCHHHHh
Confidence 9999999999976 45677888776654
No 75
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.60 E-value=1.2e-15 Score=133.17 Aligned_cols=90 Identities=16% Similarity=0.352 Sum_probs=75.7
Q ss_pred ceeeEeccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 136 HAFNVVTSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 136 ~~v~~L~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
+.|.+++.++|++.+ +.+.+|+|.||+|||++|+.+.|.|+++|+++++. +.|++|||+ ...++|+++++...+
T Consensus 28 ~~v~~l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd---~~~~la~~~~V~~~~ 104 (152)
T cd02962 28 EHIKYFTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIG---RFPNVAEKFRVSTSP 104 (152)
T ss_pred CccEEcCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECC---CCHHHHHHcCceecC
Confidence 457889999999887 33579999999999999999999999999999864 899999999 455699999944333
Q ss_pred cccCccEEEEeCCCCC
Q 014549 213 FRRGLPSLVAFPPGCK 228 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~ 228 (423)
.++++||+++|++|+.
T Consensus 105 ~v~~~PT~ilf~~Gk~ 120 (152)
T cd02962 105 LSKQLPTIILFQGGKE 120 (152)
T ss_pred CcCCCCEEEEEECCEE
Confidence 3444999999999876
No 76
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.60 E-value=8.8e-16 Score=137.82 Aligned_cols=70 Identities=23% Similarity=0.409 Sum_probs=64.5
Q ss_pred CCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC-----ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 34 SFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI-----PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 34 ~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~-----~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
+...|+|+||||.++|+..+||+|||+|+++||||+++ .+.++|++|+.||+||+|.++|+.||.-|...
T Consensus 11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id 85 (264)
T KOG0719|consen 11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID 85 (264)
T ss_pred ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence 44679999999999999999999999999999999985 46778999999999999999999999988755
No 77
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1e-15 Score=152.83 Aligned_cols=67 Identities=31% Similarity=0.578 Sum_probs=62.8
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++|+.+|||+|||+|+++||||++++ +.++|++|++||++|+||.+|+.||.||+.+
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~ 73 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVD 73 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcc
Confidence 699999999999999999999999999999999863 4578999999999999999999999999864
No 78
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.59 E-value=5.7e-16 Score=163.83 Aligned_cols=70 Identities=26% Similarity=0.396 Sum_probs=65.0
Q ss_pred CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (423)
Q Consensus 35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 104 (423)
...+||++|||+++|+..+||+|||+||++||||++++ +.++|+.|.+||++|+||.+|+.||.||..+.
T Consensus 571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl 642 (1136)
T PTZ00341 571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI 642 (1136)
T ss_pred CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence 36799999999999999999999999999999999873 66789999999999999999999999998763
No 79
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.59 E-value=1.1e-15 Score=152.97 Aligned_cols=67 Identities=27% Similarity=0.482 Sum_probs=63.0
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++||.+|||+|||+|+++||||+++ .+.++|++|++||++|+|+.+|+.||+||+.+
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~ 71 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA 71 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence 69999999999999999999999999999999986 46779999999999999999999999999764
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.59 E-value=1.3e-15 Score=144.39 Aligned_cols=71 Identities=31% Similarity=0.516 Sum_probs=63.1
Q ss_pred CCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC------hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549 33 RSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP------STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (423)
Q Consensus 33 ~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 104 (423)
.|..+|||+||||.++|+..||.+|||++|++||||.-.+ +..+|..|..|-+||+||++|+.||+ |++..
T Consensus 390 qs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn-GeDPL 466 (504)
T KOG0624|consen 390 QSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN-GEDPL 466 (504)
T ss_pred HhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC-CCCCC
Confidence 4668999999999999999999999999999999997652 55679999999999999999999998 55543
No 81
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.59 E-value=2e-15 Score=123.46 Aligned_cols=96 Identities=13% Similarity=0.189 Sum_probs=81.1
Q ss_pred eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccE
Q 014549 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPS 219 (423)
Q Consensus 141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pt 219 (423)
-|.++|+++++++++++|.||||||++|+.+.|.++++++.+++. +.|+.+|++ + .+++++++ |+++||
T Consensus 5 ~~~~~~~~~i~~~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~---~~~~~~~~------v~~~Pt 74 (102)
T cd02948 5 NNQEEWEELLSNKGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-T---IDTLKRYR------GKCEPT 74 (102)
T ss_pred cCHHHHHHHHccCCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-C---HHHHHHcC------CCcCcE
Confidence 466788888888999999999999999999999999999999854 689999998 2 34899999 999999
Q ss_pred EEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
+++|++|+. .....|. +.+.|.+++.+
T Consensus 75 ~~~~~~g~~----~~~~~G~-~~~~~~~~i~~ 101 (102)
T cd02948 75 FLFYKNGEL----VAVIRGA-NAPLLNKTITE 101 (102)
T ss_pred EEEEECCEE----EEEEecC-ChHHHHHHHhh
Confidence 999998865 3345564 77888888754
No 82
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.59 E-value=1.2e-15 Score=145.40 Aligned_cols=69 Identities=25% Similarity=0.396 Sum_probs=64.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCchh
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDEQ 104 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~ 104 (423)
..|||++||++.+++..+|++|||+++++||||+||+ +.++|+.|.+||+||+|+..|..||.+|..+.
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~ 75 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGS 75 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcc
Confidence 5699999999999999999999999999999999984 67789999999999999999999999987763
No 83
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.58 E-value=3e-15 Score=121.09 Aligned_cols=98 Identities=19% Similarity=0.301 Sum_probs=84.6
Q ss_pred ccCCcccccCC-CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 142 TSEDFPSIFHD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 142 ~~~nf~~~v~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
+.++|.+.+.+ +++++|.||++||++|+.+.|.++++++.+.+.+.++.|||+ ....++++++ |.++||+
T Consensus 2 ~~~~~~~~~~~~~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~~P~~ 72 (101)
T TIGR01068 2 TDANFDETIASSDKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVD---ENPDIAAKYG------IRSIPTL 72 (101)
T ss_pred CHHHHHHHHhhcCCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECC---CCHHHHHHcC------CCcCCEE
Confidence 45677777744 569999999999999999999999999999888999999999 4456899999 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
++|.+|+. ...+.|..+.+.|.+|+.+.
T Consensus 73 ~~~~~g~~----~~~~~g~~~~~~l~~~l~~~ 100 (101)
T TIGR01068 73 LLFKNGKE----VDRSVGALPKAALKQLINKN 100 (101)
T ss_pred EEEeCCcE----eeeecCCCCHHHHHHHHHhh
Confidence 99988865 34677999999999999765
No 84
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.58 E-value=1.4e-15 Score=151.48 Aligned_cols=66 Identities=32% Similarity=0.587 Sum_probs=62.5
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
|||++|||+++|+.+|||+|||+||++||||+++ .+.++|++|++||++|+|+.+|+.||.||+.+
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~ 68 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG 68 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence 7999999999999999999999999999999985 46789999999999999999999999999865
No 85
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=1.1e-15 Score=149.39 Aligned_cols=70 Identities=29% Similarity=0.475 Sum_probs=64.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC------ChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI------PSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~------~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 105 (423)
+.|+|.+|||+++|+.+|||+|||++++.+|||+.. .+++.|+.|..|||||+||.+|..||.||+.+..
T Consensus 8 e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~ 83 (546)
T KOG0718|consen 8 EIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK 83 (546)
T ss_pred hhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence 458999999999999999999999999999999864 2567799999999999999999999999998754
No 86
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.7e-15 Score=151.65 Aligned_cols=68 Identities=26% Similarity=0.524 Sum_probs=63.6
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+|+++||||+++ .+.++|.+|++||++|+||.+|+.||.||+.+
T Consensus 2 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g 71 (374)
T PRK14293 2 AADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEAG 71 (374)
T ss_pred CCChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhccccc
Confidence 359999999999999999999999999999999986 47789999999999999999999999999764
No 87
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.58 E-value=1.7e-15 Score=152.39 Aligned_cols=68 Identities=25% Similarity=0.504 Sum_probs=63.4
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|||++|||+++|+.+|||+|||+||++||||++++ +.++|++|++||++|+||.+|+.||.||+.+
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~ 74 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAG 74 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccc
Confidence 4699999999999999999999999999999999873 5678999999999999999999999999764
No 88
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.57 E-value=2.4e-15 Score=125.31 Aligned_cols=82 Identities=16% Similarity=0.229 Sum_probs=73.0
Q ss_pred ceeeEeccCCcccccCCC---CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 136 HAFNVVTSEDFPSIFHDS---KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 136 ~~v~~L~~~nf~~~v~~~---~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
..|.++++++|.+.|.+. .+++|.||+|||++|+.+.|.++++|+.+.+ +.|++||+++ . .++++++
T Consensus 4 g~v~~i~~~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~-v~f~~vd~~~---~-~l~~~~~----- 73 (113)
T cd02957 4 GEVREISSKEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPE-TKFVKINAEK---A-FLVNYLD----- 73 (113)
T ss_pred ceEEEEcHHHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCC-cEEEEEEchh---h-HHHHhcC-----
Confidence 447889999999888443 8999999999999999999999999999865 7899999993 3 6999999
Q ss_pred cccCccEEEEeCCCCC
Q 014549 213 FRRGLPSLVAFPPGCK 228 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~ 228 (423)
|+++||+++|++|+.
T Consensus 74 -i~~~Pt~~~f~~G~~ 88 (113)
T cd02957 74 -IKVLPTLLVYKNGEL 88 (113)
T ss_pred -CCcCCEEEEEECCEE
Confidence 999999999999976
No 89
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.57 E-value=2e-15 Score=151.22 Aligned_cols=67 Identities=27% Similarity=0.522 Sum_probs=63.1
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++|+.++||+|||+|+++||||++++ +.++|.+|++||++|+||.+|+.||.||+.+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 499999999999999999999999999999999863 6789999999999999999999999999864
No 90
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.56 E-value=3.3e-15 Score=145.75 Aligned_cols=66 Identities=24% Similarity=0.471 Sum_probs=62.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCc
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGID 102 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~ 102 (423)
.|||++|||+++|+.+|||+|||+|+++||||+++ .+.++|++|++||++|+||.+|+.||.+|..
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~~ 71 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQH 71 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhcc
Confidence 59999999999999999999999999999999985 4778999999999999999999999999854
No 91
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.55 E-value=8.8e-15 Score=119.89 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=81.4
Q ss_pred CCcccccCCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccE
Q 014549 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPS 219 (423)
Q Consensus 144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pt 219 (423)
++|++.++++++++|.||++||++|+.+.|.+ +++++.+.+.+.++.||++++.. ...++++++ |.++||
T Consensus 2 ~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~------i~~~Pt 75 (104)
T cd02953 2 AALAQALAQGKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFG------VFGPPT 75 (104)
T ss_pred HHHHHHHHcCCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcC------CCCCCE
Confidence 35677778899999999999999999999999 68888888778999999984322 467999999 999999
Q ss_pred EEEeCC--CCCCCCCcccccCCCCHHHHHHHH
Q 014549 220 LVAFPP--GCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 220 i~~f~~--g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
+++|.+ |+. +..+.|..+.++|.+++
T Consensus 76 i~~~~~~~g~~----~~~~~G~~~~~~l~~~l 103 (104)
T cd02953 76 YLFYGPGGEPE----PLRLPGFLTADEFLEAL 103 (104)
T ss_pred EEEECCCCCCC----CcccccccCHHHHHHHh
Confidence 999985 443 56788999999998886
No 92
>PTZ00102 disulphide isomerase; Provisional
Probab=99.55 E-value=8.9e-15 Score=151.68 Aligned_cols=106 Identities=14% Similarity=0.245 Sum_probs=93.6
Q ss_pred cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc--cceEEEEEcccchhhhHHHhhCCCCcc
Q 014549 135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--IANTGMVELGDIRLATHLAERKPIGQI 211 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--~~~~~~Vdc~~~~~~~~l~~~~~~~~~ 211 (423)
...|..|+.++|++.+ +++++++|.||||||++|+.+.|.|+++|+.+++ .+.++.+||+.+ ..+|++++
T Consensus 356 ~~~v~~l~~~~f~~~v~~~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~---~~~~~~~~---- 428 (477)
T PTZ00102 356 DGPVKVVVGNTFEEIVFKSDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTAN---ETPLEEFS---- 428 (477)
T ss_pred CCCeEEecccchHHHHhcCCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCC---ccchhcCC----
Confidence 3458899999999885 7889999999999999999999999999999875 478999999944 44788888
Q ss_pred ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|+++||+++|++|+.. +..|.|.++.++|.+|+.+.
T Consensus 429 --v~~~Pt~~~~~~~~~~---~~~~~G~~~~~~l~~~i~~~ 464 (477)
T PTZ00102 429 --WSAFPTILFVKAGERT---PIPYEGERTVEGFKEFVNKH 464 (477)
T ss_pred --CcccCeEEEEECCCcc---eeEecCcCCHHHHHHHHHHc
Confidence 9999999999998653 55799999999999999988
No 93
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.52 E-value=1.6e-14 Score=120.40 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=73.5
Q ss_pred eeEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549 138 FNVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (423)
Q Consensus 138 v~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~ 216 (423)
+.++++ ++|.+.+.++.+++|.||+|||++|+.+.|.++++++++.+ ++|.+||++ ....++++++ |.+
T Consensus 6 v~~i~~~~~~~~~i~~~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~-i~f~~Vd~~---~~~~l~~~~~------v~~ 75 (113)
T cd02989 6 YREVSDEKEFFEIVKSSERVVCHFYHPEFFRCKIMDKHLEILAKKHLE-TKFIKVNAE---KAPFLVEKLN------IKV 75 (113)
T ss_pred eEEeCCHHHHHHHHhCCCcEEEEEECCCCccHHHHHHHHHHHHHHcCC-CEEEEEEcc---cCHHHHHHCC------Ccc
Confidence 677887 88999998889999999999999999999999999998765 799999999 4556999999 999
Q ss_pred ccEEEEeCCCCC
Q 014549 217 LPSLVAFPPGCK 228 (423)
Q Consensus 217 ~Pti~~f~~g~~ 228 (423)
+||+++|++|+.
T Consensus 76 vPt~l~fk~G~~ 87 (113)
T cd02989 76 LPTVILFKNGKT 87 (113)
T ss_pred CCEEEEEECCEE
Confidence 999999999975
No 94
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=1.8e-14 Score=130.76 Aligned_cols=87 Identities=26% Similarity=0.351 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--hHHHHHHHHHHHHHcCCh
Q 014549 13 YWAPLILFGLGLFYQLVVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--STADFLKIQYAYELLTDP 90 (423)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--~~~~f~~i~~Ay~~L~~~ 90 (423)
.|+.+++++.++++.++--.=++.+|+|+||||++.++..||.+|||+||+++|||++++ ..+.|+.|..||++|.|.
T Consensus 9 w~Lvl~~Llp~l~vgl~egLYCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~ 88 (329)
T KOG0722|consen 9 WCLVLILLLPSLFVGLSEGLYCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDN 88 (329)
T ss_pred HHHHHHHHHHHHHHhhhhhhcccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccch
Confidence 344444444444444433344779999999999999999999999999999999998764 445699999999999999
Q ss_pred hhHhhhhhc
Q 014549 91 LWKRNYDVY 99 (423)
Q Consensus 91 ~~r~~yd~~ 99 (423)
+.|..||-.
T Consensus 89 e~rt~ydya 97 (329)
T KOG0722|consen 89 ETRTQYDYA 97 (329)
T ss_pred hhHHhHHHH
Confidence 999999965
No 95
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.51 E-value=6e-14 Score=121.70 Aligned_cols=101 Identities=15% Similarity=0.198 Sum_probs=83.9
Q ss_pred cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
...|++.+..+++++|.|||+||++|+.+.|.++++++.+.+.+.|..||.+.+. ...++++|+ |.++||+++
T Consensus 10 ~~~~~~a~~~gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~-~~~~~~~~~------V~~iPt~v~ 82 (142)
T cd02950 10 STPPEVALSNGKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPK-WLPEIDRYR------VDGIPHFVF 82 (142)
T ss_pred cCCHHHHHhCCCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcc-cHHHHHHcC------CCCCCEEEE
Confidence 3467777788999999999999999999999999999999877888888877432 346889999 999999999
Q ss_pred eC-CCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549 223 FP-PGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (423)
Q Consensus 223 f~-~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~ 254 (423)
|. +|+. ...+.|..+.+.|.+++.+.+.
T Consensus 83 ~~~~G~~----v~~~~G~~~~~~l~~~l~~l~~ 111 (142)
T cd02950 83 LDREGNE----EGQSIGLQPKQVLAQNLDALVA 111 (142)
T ss_pred ECCCCCE----EEEEeCCCCHHHHHHHHHHHHc
Confidence 95 5654 4567799999999999987743
No 96
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=3.6e-14 Score=143.15 Aligned_cols=105 Identities=23% Similarity=0.471 Sum_probs=93.5
Q ss_pred eeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 137 AFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.|.+|+..+|+..+ ..+..|+|.||+|||+||+.++|+|+++|..++ +.+.++.+||+ ....+|++++
T Consensus 145 ~v~~l~~~~~~~~~~~~~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~---~~~~~~~~~~------ 215 (383)
T KOG0191|consen 145 EVFELTKDNFDETVKDSDADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDAT---VHKSLASRLE------ 215 (383)
T ss_pred ceEEccccchhhhhhccCcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccc---hHHHHhhhhc------
Confidence 47999999999877 778999999999999999999999999999996 45899999999 6677999999
Q ss_pred ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~ 253 (423)
|++|||+++|++|.. ....|.|.|+.+.|+.|+.+..
T Consensus 216 v~~~Pt~~~f~~~~~---~~~~~~~~R~~~~i~~~v~~~~ 252 (383)
T KOG0191|consen 216 VRGYPTLKLFPPGEE---DIYYYSGLRDSDSIVSFVEKKE 252 (383)
T ss_pred ccCCceEEEecCCCc---ccccccccccHHHHHHHHHhhc
Confidence 999999999999875 1346679999999999998873
No 97
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.50 E-value=2.8e-14 Score=104.83 Aligned_cols=55 Identities=31% Similarity=0.585 Sum_probs=51.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChh
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPL 91 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~ 91 (423)
.|||++|||+++++.++||++||++++++|||++++ +.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence 489999999999999999999999999999999874 6778999999999999985
No 98
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.50 E-value=3.5e-14 Score=102.36 Aligned_cols=52 Identities=37% Similarity=0.636 Sum_probs=49.2
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC---hHHHHHHHHHHHHHcCC
Q 014549 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP---STADFLKIQYAYELLTD 89 (423)
Q Consensus 38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~---~~~~f~~i~~Ay~~L~~ 89 (423)
|||++|||+++++.++||++||++++++|||++++ +.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence 79999999999999999999999999999999875 67889999999999986
No 99
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.49 E-value=3.2e-14 Score=114.75 Aligned_cols=93 Identities=15% Similarity=0.234 Sum_probs=76.2
Q ss_pred cCCcccccCCC--CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 143 SEDFPSIFHDS--KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 143 ~~nf~~~v~~~--~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
.++|++.+.+. ++++|.||+|||++|+++.|.++++++.+.+.+.+.++|++ ....++++++ |.++||+
T Consensus 2 ~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~---~~~~~~~~~~------i~~~Pt~ 72 (97)
T cd02984 2 EEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAE---ELPEISEKFE------ITAVPTF 72 (97)
T ss_pred HHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccc---cCHHHHHhcC------CccccEE
Confidence 35677777544 99999999999999999999999999998667899999999 4556999999 9999999
Q ss_pred EEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 221 VAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
++|.+|+. ...+.|. +.++|.+.+
T Consensus 73 ~~~~~g~~----~~~~~g~-~~~~l~~~~ 96 (97)
T cd02984 73 VFFRNGTI----VDRVSGA-DPKELAKKV 96 (97)
T ss_pred EEEECCEE----EEEEeCC-CHHHHHHhh
Confidence 99998865 3345564 567776654
No 100
>PHA03102 Small T antigen; Reviewed
Probab=99.49 E-value=2e-14 Score=124.22 Aligned_cols=68 Identities=10% Similarity=0.122 Sum_probs=63.1
Q ss_pred ccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhhhcCCchhh
Q 014549 37 PSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYDVYGIDEQL 105 (423)
Q Consensus 37 ~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~ 105 (423)
+..|++|||+++| |..+||+|||++++++|||++ ++.++|++|++||++|+|+.+|..||.+|.+...
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkg-g~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKG-GDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-chhHHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 4689999999999 999999999999999999997 5678999999999999999999999999987643
No 101
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.47 E-value=1.1e-13 Score=142.68 Aligned_cols=105 Identities=15% Similarity=0.301 Sum_probs=91.5
Q ss_pred cceeeEeccCCccccc-CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhCCCCc
Q 014549 135 VHAFNVVTSEDFPSIF-HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERKPIGQ 210 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v-~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~~~~~ 210 (423)
...|..|+.++|++.+ ++++.++|.||+|||++|+.+.|.|+++|+.+.+ .+.|+.+||+.+. ++. ++
T Consensus 345 ~~~v~~l~~~~f~~~v~~~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~----~~~-~~--- 416 (462)
T TIGR01130 345 EGPVKVLVGKNFDEIVLDETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND----VPP-FE--- 416 (462)
T ss_pred CCccEEeeCcCHHHHhccCCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc----cCC-CC---
Confidence 3468899999999987 7789999999999999999999999999999998 5899999999553 333 66
Q ss_pred cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|+++||+++|++|... .+..|.|.++.++|++|+.+.
T Consensus 417 ---i~~~Pt~~~~~~~~~~--~~~~~~g~~~~~~l~~~l~~~ 453 (462)
T TIGR01130 417 ---VEGFPTIKFVPAGKKS--EPVPYDGDRTLEDFSKFIAKH 453 (462)
T ss_pred ---ccccCEEEEEeCCCCc--CceEecCcCCHHHHHHHHHhc
Confidence 9999999999988651 256899999999999999887
No 102
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.3e-13 Score=112.90 Aligned_cols=85 Identities=13% Similarity=0.197 Sum_probs=72.7
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~ 230 (423)
.++++++|.|||+|||+|+.++|.++++|.++.+ +.|.+||+++ ..++|++++ |+..||+++|++|+.
T Consensus 19 ~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde---~~~~~~~~~------V~~~PTf~f~k~g~~-- 86 (106)
T KOG0907|consen 19 AGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE---LEEVAKEFN------VKAMPTFVFYKGGEE-- 86 (106)
T ss_pred CCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc---CHhHHHhcC------ceEeeEEEEEECCEE--
Confidence 4469999999999999999999999999999999 9999999996 567999999 999999999999976
Q ss_pred CCcccccCCCCHHHHHHHHH
Q 014549 231 DCMTRFEGELSVDAVTDWFA 250 (423)
Q Consensus 231 ~~~~~y~G~~~~~~l~~fi~ 250 (423)
...+-|.. .+.+.+.+.
T Consensus 87 --~~~~vGa~-~~~l~~~i~ 103 (106)
T KOG0907|consen 87 --VDEVVGAN-KAELEKKIA 103 (106)
T ss_pred --EEEEecCC-HHHHHHHHH
Confidence 45666654 335555554
No 103
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.46 E-value=1.8e-13 Score=107.89 Aligned_cols=91 Identities=16% Similarity=0.304 Sum_probs=79.4
Q ss_pred CcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC
Q 014549 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (423)
Q Consensus 145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~ 224 (423)
+|++.+..+++++|.||++||++|+.+.|.++++++. .+.+.++.+||+ ....++++++ +.++||+++|.
T Consensus 2 ~~~~~~~~~~~~ll~~~~~~C~~C~~~~~~~~~~~~~-~~~~~~~~i~~~---~~~~~~~~~~------v~~~P~~~~~~ 71 (93)
T cd02947 2 EFEELIKSAKPVVVDFWAPWCGPCKAIAPVLEELAEE-YPKVKFVKVDVD---ENPELAEEYG------VRSIPTFLFFK 71 (93)
T ss_pred chHHHHhcCCcEEEEEECCCChhHHHhhHHHHHHHHH-CCCceEEEEECC---CChhHHHhcC------cccccEEEEEE
Confidence 5667776779999999999999999999999999988 667899999999 4456999999 89999999999
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHH
Q 014549 225 PGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 225 ~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
+|+. ...+.|..+.+.|.+|+
T Consensus 72 ~g~~----~~~~~g~~~~~~l~~~i 92 (93)
T cd02947 72 NGKE----VDRVVGADPKEELEEFL 92 (93)
T ss_pred CCEE----EEEEecCCCHHHHHHHh
Confidence 8865 45778888889998886
No 104
>PTZ00051 thioredoxin; Provisional
Probab=99.46 E-value=7.6e-14 Score=112.80 Aligned_cols=92 Identities=16% Similarity=0.298 Sum_probs=76.0
Q ss_pred eEecc-CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 139 NVVTS-EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 139 ~~L~~-~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
.++++ ++|.++++.+++++|.||++||++|+.+.|.|+++++.+.+ +.++.|||+ ....++++++ |.++
T Consensus 3 ~~i~~~~~~~~~~~~~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~vd~~---~~~~~~~~~~------v~~~ 72 (98)
T PTZ00051 3 HIVTSQAEFESTLSQNELVIVDFYAEWCGPCKRIAPFYEECSKEYTK-MVFVKVDVD---ELSEVAEKEN------ITSM 72 (98)
T ss_pred EEecCHHHHHHHHhcCCeEEEEEECCCCHHHHHHhHHHHHHHHHcCC-cEEEEEECc---chHHHHHHCC------Ccee
Confidence 44544 56888888899999999999999999999999999997654 789999999 4556999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHH
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l 245 (423)
||+++|++|+. ...+.|. ..++|
T Consensus 73 Pt~~~~~~g~~----~~~~~G~-~~~~~ 95 (98)
T PTZ00051 73 PTFKVFKNGSV----VDTLLGA-NDEAL 95 (98)
T ss_pred eEEEEEeCCeE----EEEEeCC-CHHHh
Confidence 99999998876 3466675 34544
No 105
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.45 E-value=2.8e-13 Score=109.55 Aligned_cols=86 Identities=12% Similarity=0.157 Sum_probs=77.3
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~ 230 (423)
+.+++++|.||++||+.|+.+.|.++++++.+.+.+.++.+|++ ...+++++++ |.++||+++|.+|+.
T Consensus 11 ~~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d---~~~~l~~~~~------v~~vPt~~i~~~g~~-- 79 (97)
T cd02949 11 ESDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID---EDQEIAEAAG------IMGTPTVQFFKDKEL-- 79 (97)
T ss_pred hCCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC---CCHHHHHHCC------CeeccEEEEEECCeE--
Confidence 67889999999999999999999999999999888899999999 4456899999 999999999988765
Q ss_pred CCcccccCCCCHHHHHHHH
Q 014549 231 DCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 231 ~~~~~y~G~~~~~~l~~fi 249 (423)
...+.|.++.+.|.+|+
T Consensus 80 --v~~~~g~~~~~~~~~~l 96 (97)
T cd02949 80 --VKEISGVKMKSEYREFI 96 (97)
T ss_pred --EEEEeCCccHHHHHHhh
Confidence 46788999999999886
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.44 E-value=1.7e-13 Score=117.59 Aligned_cols=98 Identities=11% Similarity=0.052 Sum_probs=78.4
Q ss_pred cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 143 ~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
..+|++.| ..+++++|.|||+||++|+.+.|.++++|+++.+.+.|.+||.+ +.++++++|+ |++.||+
T Consensus 11 ~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVD---e~~dla~~y~------I~~~~t~ 81 (142)
T PLN00410 11 GWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDIT---EVPDFNTMYE------LYDPCTV 81 (142)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECC---CCHHHHHHcC------ccCCCcE
Confidence 45677777 46789999999999999999999999999999999999999999 5566999999 9878666
Q ss_pred E-EeCCCCCCCCCcccccC--------CCCHHHHHHHHHHh
Q 014549 221 V-AFPPGCKSSDCMTRFEG--------ELSVDAVTDWFATA 252 (423)
Q Consensus 221 ~-~f~~g~~~~~~~~~y~G--------~~~~~~l~~fi~~~ 252 (423)
+ +|++|+.. .....| ..+.++|++-+...
T Consensus 82 ~~ffk~g~~~---vd~~tG~~~k~~~~~~~k~~l~~~i~~~ 119 (142)
T PLN00410 82 MFFFRNKHIM---IDLGTGNNNKINWALKDKQEFIDIVETV 119 (142)
T ss_pred EEEEECCeEE---EEEecccccccccccCCHHHHHHHHHHH
Confidence 6 89988632 445556 45666666655443
No 107
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.43 E-value=1.5e-13 Score=142.64 Aligned_cols=67 Identities=28% Similarity=0.537 Sum_probs=62.4
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.|||++|||+++|+..+||+|||+|++++|||+++ .+.++|++|++||++|+||.+|..||.||..+
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG 70 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDG 70 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccc
Confidence 59999999999999999999999999999999986 45668999999999999999999999998754
No 108
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.38 E-value=1.1e-12 Score=109.27 Aligned_cols=95 Identities=12% Similarity=0.155 Sum_probs=78.5
Q ss_pred cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC
Q 014549 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (423)
Q Consensus 146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~ 225 (423)
|.+.+.....++|.||++||++|+.+.|.+++++... +.+.+..||.++ .++++++|+ |+++||+++|.+
T Consensus 15 ~~~~l~~~~~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d~---~~~l~~~~~------v~~vPt~~i~~~ 84 (113)
T cd02975 15 FFKEMKNPVDLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFDE---DKEKAEKYG------VERVPTTIFLQD 84 (113)
T ss_pred HHHHhCCCeEEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCCc---CHHHHHHcC------CCcCCEEEEEeC
Confidence 4444566777899999999999999999999999886 668999999994 456999999 999999999998
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 226 GCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 226 g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|... ....|.|..+...+.+|+...
T Consensus 85 g~~~--~~~~~~G~~~~~el~~~i~~i 109 (113)
T cd02975 85 GGKD--GGIRYYGLPAGYEFASLIEDI 109 (113)
T ss_pred Ceec--ceEEEEecCchHHHHHHHHHH
Confidence 7542 123688988888999988764
No 109
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.38 E-value=7.8e-13 Score=118.60 Aligned_cols=103 Identities=13% Similarity=0.247 Sum_probs=80.3
Q ss_pred eeeEecc-CCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 137 AFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 137 ~v~~L~~-~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
.|.+++. ++|.+.|.. +.+++|.||+|||+.|+.+.|.++++|+.+. .++|.+||+++ . .++.+|+
T Consensus 63 ~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~---~-~l~~~f~----- 132 (175)
T cd02987 63 KVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASA---T-GASDEFD----- 132 (175)
T ss_pred eEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccc---h-hhHHhCC-----
Confidence 3788999 999988843 2499999999999999999999999999875 58999999994 3 6899999
Q ss_pred cccCccEEEEeCCCCCCCCCccccc----CCCCHHHHHHHHHH
Q 014549 213 FRRGLPSLVAFPPGCKSSDCMTRFE----GELSVDAVTDWFAT 251 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~~~~~~~~y~----G~~~~~~l~~fi~~ 251 (423)
|..+||+++|++|+.. ....-+. +..+.++|..|+.+
T Consensus 133 -v~~vPTlllyk~G~~v-~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 133 -TDALPALLVYKGGELI-GNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred -CCCCCEEEEEECCEEE-EEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999999999999752 1111111 24566666666544
No 110
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.37 E-value=6e-13 Score=109.17 Aligned_cols=77 Identities=14% Similarity=0.157 Sum_probs=67.9
Q ss_pred CCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549 144 EDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 144 ~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
+.|++.| .++++++|.|+|+||++|+.+.|.++++|+++++.+.|.+||.+ +.++++++|+ |...||++
T Consensus 3 ~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVD---ev~dva~~y~------I~amPtfv 73 (114)
T cd02986 3 KEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVD---KVPVYTQYFD------ISYIPSTI 73 (114)
T ss_pred HHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEecc---ccHHHHHhcC------ceeCcEEE
Confidence 3455555 35899999999999999999999999999999887999999999 5567999999 98999999
Q ss_pred EeCCCCCC
Q 014549 222 AFPPGCKS 229 (423)
Q Consensus 222 ~f~~g~~~ 229 (423)
+|.+|+..
T Consensus 74 ffkngkh~ 81 (114)
T cd02986 74 FFFNGQHM 81 (114)
T ss_pred EEECCcEE
Confidence 99999763
No 111
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.37 E-value=1.2e-12 Score=110.36 Aligned_cols=105 Identities=16% Similarity=0.126 Sum_probs=83.2
Q ss_pred eeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------hhhHHHhhCCC
Q 014549 137 AFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPI 208 (423)
Q Consensus 137 ~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------~~~~l~~~~~~ 208 (423)
.+..++.++|.+.+.+++..+|.|+++||++|+.+.|.+++++++ ..+.|..||.+.+. ...++.+++++
T Consensus 7 ~~~~it~~~~~~~i~~~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~--~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i 84 (122)
T TIGR01295 7 GLEVTTVVRALEALDKKETATFFIGRKTCPYCRKFSGTLSGVVAQ--TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGI 84 (122)
T ss_pred cceecCHHHHHHHHHcCCcEEEEEECCCChhHHHHhHHHHHHHHh--cCCcEEEEECCCccCcCcccHHHHHHHHHHcCC
Confidence 356788889999999999999999999999999999999999998 44678899987442 23356676651
Q ss_pred CccccccCccEEEEeCCCCCCCCCcccccC-CCCHHHHHHHH
Q 014549 209 GQIFFRRGLPSLVAFPPGCKSSDCMTRFEG-ELSVDAVTDWF 249 (423)
Q Consensus 209 ~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G-~~~~~~l~~fi 249 (423)
...|.++||+++|.+|+. .....| ..+.++|.+|+
T Consensus 85 --~~~i~~~PT~v~~k~Gk~----v~~~~G~~~~~~~l~~~~ 120 (122)
T TIGR01295 85 --PTSFMGTPTFVHITDGKQ----VSVRCGSSTTAQELQDIA 120 (122)
T ss_pred --cccCCCCCEEEEEeCCeE----EEEEeCCCCCHHHHHHHh
Confidence 122667999999999976 346667 55799998886
No 112
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.36 E-value=2e-12 Score=105.33 Aligned_cols=87 Identities=17% Similarity=0.222 Sum_probs=75.4
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc--CccEEEEeCC--CC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR--GLPSLVAFPP--GC 227 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~--~~Pti~~f~~--g~ 227 (423)
.+.++++.||++||++|+.+.|.++++|+++++.+.|+.||++ ....+++.++ +. ++|+++++.. |.
T Consensus 11 ~~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~---~~~~~~~~~~------i~~~~~P~~~~~~~~~~~ 81 (103)
T cd02982 11 SGKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDAD---DFGRHLEYFG------LKEEDLPVIAIINLSDGK 81 (103)
T ss_pred cCCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchH---hhHHHHHHcC------CChhhCCEEEEEeccccc
Confidence 3689999999999999999999999999999999999999999 4556999999 88 9999999998 44
Q ss_pred CCCCCccccc-CCCCHHHHHHHHHHh
Q 014549 228 KSSDCMTRFE-GELSVDAVTDWFATA 252 (423)
Q Consensus 228 ~~~~~~~~y~-G~~~~~~l~~fi~~~ 252 (423)
.. .+. |..+.++|.+|+.+.
T Consensus 82 k~-----~~~~~~~~~~~l~~fi~~~ 102 (103)
T cd02982 82 KY-----LMPEEELTAESLEEFVEDF 102 (103)
T ss_pred cc-----CCCccccCHHHHHHHHHhh
Confidence 32 344 455899999999764
No 113
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=1.6e-12 Score=120.36 Aligned_cols=65 Identities=34% Similarity=0.620 Sum_probs=60.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC----hHHHHHHHHHHHHHcCChhhHhhhhhcC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP----STADFLKIQYAYELLTDPLWKRNYDVYG 100 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~----~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 100 (423)
..|||++|||+++|+..|||+|||++++++|||+++. +.++|..|++||++|+|+.+|..||..+
T Consensus 5 ~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 5 LLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 4589999999999999999999999999999999884 4588999999999999999999999985
No 114
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.29 E-value=1.6e-11 Score=95.67 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=68.8
Q ss_pred EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (423)
Q Consensus 156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~ 235 (423)
-+..||+|||++|+.+.|.++++++.+.+.+.+..||++ ...+++++++ ++++||+++ +|.. .
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~---~~~~~~~~~~------v~~vPt~~~--~g~~------~ 64 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVM---ENPQKAMEYG------IMAVPAIVI--NGDV------E 64 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCc---cCHHHHHHcC------CccCCEEEE--CCEE------E
Confidence 467899999999999999999999999877899999998 4456889999 999999986 5532 6
Q ss_pred ccCCCCHHHHHHHHHHh
Q 014549 236 FEGELSVDAVTDWFATA 252 (423)
Q Consensus 236 y~G~~~~~~l~~fi~~~ 252 (423)
+.|..+.+.|.+++.+.
T Consensus 65 ~~G~~~~~~l~~~l~~~ 81 (82)
T TIGR00411 65 FIGAPTKEELVEAIKKR 81 (82)
T ss_pred EecCCCHHHHHHHHHhh
Confidence 88999999999988654
No 115
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.28 E-value=8.2e-12 Score=113.53 Aligned_cols=98 Identities=13% Similarity=0.241 Sum_probs=77.7
Q ss_pred eeeEeccCCccccc-CC--CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 137 AFNVVTSEDFPSIF-HD--SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 137 ~v~~L~~~nf~~~v-~~--~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.|.+++..+|...| .+ +.+++|.||+|||+.|+.+.|.|+++|..+. .++|++||++ . ++..|+
T Consensus 83 ~v~eis~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad---~---~~~~~~------ 149 (192)
T cd02988 83 EVYEISKPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIIST---Q---CIPNYP------ 149 (192)
T ss_pred eEEEeCHHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhH---H---hHhhCC------
Confidence 37889999998766 33 3589999999999999999999999999985 4799999998 3 357788
Q ss_pred ccCccEEEEeCCCCCCCCCccccc------C-CCCHHHHHHHHHH
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFE------G-ELSVDAVTDWFAT 251 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~------G-~~~~~~l~~fi~~ 251 (423)
|+++|||++|++|.. ...+. | ..+.++|-.++.+
T Consensus 150 i~~lPTlliyk~G~~----v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 150 DKNLPTILVYRNGDI----VKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred CCCCCEEEEEECCEE----EEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 999999999999975 22333 2 4566666666543
No 116
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=7.6e-12 Score=114.02 Aligned_cols=102 Identities=17% Similarity=0.236 Sum_probs=83.2
Q ss_pred eeEec-cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVT-SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~-~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|++++ +++|+..+ ...+.++|.|||.|||+|++++|+|+.+|..+.+ ..|.+||.+ +-...+..+| |
T Consensus 3 Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~-aVFlkVdVd---~c~~taa~~g------V 72 (288)
T KOG0908|consen 3 VIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPG-AVFLKVDVD---ECRGTAATNG------V 72 (288)
T ss_pred eEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcc-cEEEEEeHH---HhhchhhhcC------c
Confidence 34444 46788887 4567999999999999999999999999999854 579999999 4445778888 9
Q ss_pred cCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhhc
Q 014549 215 RGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAIL 254 (423)
Q Consensus 215 ~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~ 254 (423)
+..||+++|++|.+ ...+.|. ++..|.+-+.+++.
T Consensus 73 ~amPTFiff~ng~k----id~~qGA-d~~gLe~kv~~~~s 107 (288)
T KOG0908|consen 73 NAMPTFIFFRNGVK----IDQIQGA-DASGLEEKVAKYAS 107 (288)
T ss_pred ccCceEEEEecCeE----eeeecCC-CHHHHHHHHHHHhc
Confidence 99999999999987 4577775 57888888887733
No 117
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=4.1e-12 Score=124.72 Aligned_cols=65 Identities=25% Similarity=0.387 Sum_probs=61.3
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHHHcCChhhHhhhhhcC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 100 (423)
..|+|.+|||++++|+++|||.||++|...|||||. .+.|.|+.|+.||++|+|+++|+.||.--
T Consensus 234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~ 300 (490)
T KOG0720|consen 234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLEL 300 (490)
T ss_pred CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHH
Confidence 679999999999999999999999999999999875 68889999999999999999999999753
No 118
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.25 E-value=1.3e-11 Score=104.53 Aligned_cols=97 Identities=18% Similarity=0.294 Sum_probs=76.7
Q ss_pred ccccCCC-CcEEEEEecCCCccccccHHHHH---HHHHHhhccceEEEEEcccch----------hhhHHHhhCCCCccc
Q 014549 147 PSIFHDS-KPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIF 212 (423)
Q Consensus 147 ~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~---~~A~~l~~~~~~~~Vdc~~~~----------~~~~l~~~~~~~~~~ 212 (423)
.+..+++ ++++|.||++||++|+++.|.+. ++.+.+.+.+.+..||.+++. ....++++++
T Consensus 7 ~~a~~~~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~~----- 81 (125)
T cd02951 7 AEAAADGKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKYR----- 81 (125)
T ss_pred HHHHHcCCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHcC-----
Confidence 3445677 99999999999999999999885 566677666778889887431 1356899999
Q ss_pred cccCccEEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 213 FRRGLPSLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 213 ~i~~~Pti~~f~~g-~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|.++||+++|.++ +.. ...+.|..+.+.+.+++...
T Consensus 82 -v~~~Pt~~~~~~~gg~~---~~~~~G~~~~~~~~~~l~~~ 118 (125)
T cd02951 82 -VRFTPTVIFLDPEGGKE---IARLPGYLPPDEFLAYLEYV 118 (125)
T ss_pred -CccccEEEEEcCCCCce---eEEecCCCCHHHHHHHHHHH
Confidence 9999999999986 342 45678988888888888665
No 119
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.25 E-value=1.1e-11 Score=109.78 Aligned_cols=62 Identities=16% Similarity=0.275 Sum_probs=55.3
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCChHH------HHHHHHHHHHHcCChhhHhhhhh
Q 014549 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIPSTA------DFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~~~~------~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
.|||++|||++. ++..+|+++||++++++|||+..+..+ .+..|++||++|+||.+|..|+.
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL 71 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYML 71 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 489999999987 789999999999999999999864333 37799999999999999999985
No 120
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.23 E-value=1.5e-11 Score=109.50 Aligned_cols=62 Identities=15% Similarity=0.303 Sum_probs=54.9
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
.|||++|||++. ++..+||++||++++++|||+..+ +.+.+..|++||++|+||.+|..|+.
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll 72 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLL 72 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHH
Confidence 389999999996 678999999999999999998652 24468999999999999999999985
No 121
>PTZ00062 glutaredoxin; Provisional
Probab=99.20 E-value=2e-10 Score=104.89 Aligned_cols=162 Identities=8% Similarity=-0.007 Sum_probs=103.4
Q ss_pred cCCcccccCCC-CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549 143 SEDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 143 ~~nf~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
.++|.+.++++ ...++.|+|+||+.|+.+.|.++++++++. .+.|..||.+ ++ |.++||++
T Consensus 6 ~ee~~~~i~~~~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~-~~~F~~V~~d-----------~~------V~~vPtfv 67 (204)
T PTZ00062 6 KEEKDKLIESNTGKLVLYVKSSKEPEYEQLMDVCNALVEDFP-SLEFYVVNLA-----------DA------NNEYGVFE 67 (204)
T ss_pred HHHHHHHHhcCCCcEEEEEeCCCCcchHHHHHHHHHHHHHCC-CcEEEEEccc-----------cC------cccceEEE
Confidence 34566677543 778999999999999999999999999884 5899999976 46 99999999
Q ss_pred EeCCCCCCCCCcccccCCCCHHHHHHHHHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecC---CCCCchH-HH
Q 014549 222 AFPPGCKSSDCMTRFEGELSVDAVTDWFATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKT---GERASPF-VR 297 (423)
Q Consensus 222 ~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~---~~~~~~~-~~ 297 (423)
+|++|+. ..++.|. ++..|..++.+.....+.. ...+++...-...++++|.... ..|.... .+
T Consensus 68 ~~~~g~~----i~r~~G~-~~~~~~~~~~~~~~~~~~~-------~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~~C~~~k 135 (204)
T PTZ00062 68 FYQNSQL----INSLEGC-NTSTLVSFIRGWAQKGSSE-------DTVEKIERLIRNHKILLFMKGSKTFPFCRFSNAVV 135 (204)
T ss_pred EEECCEE----EeeeeCC-CHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHhcCCEEEEEccCCCCCCChhHHHHH
Confidence 9999976 4577776 4889999998873322211 1233333322223566655421 2333222 22
Q ss_pred HHHHhccccceEEEEEcccccc--HHHHhhcCCCCCCeEEE
Q 014549 298 QISRNYWAYASFAFVLWREEES--SIWWNTFEVESAPAIVF 336 (423)
Q Consensus 298 ~~a~~~~~~~~f~~v~~~~~~~--~~l~~~f~v~~~Ptl~l 336 (423)
.+..+. .+.+..+.+.+... +.+.+.-|-.++|.|++
T Consensus 136 ~~L~~~--~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI 174 (204)
T PTZ00062 136 NMLNSS--GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV 174 (204)
T ss_pred HHHHHc--CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE
Confidence 222222 35555555443221 34455556566887765
No 122
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.20 E-value=3.4e-11 Score=107.06 Aligned_cols=65 Identities=15% Similarity=0.310 Sum_probs=57.4
Q ss_pred CCcccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 34 ~~~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
++..|||++||+++. .+..+|+++||++++++|||+..+ +.+.+..|++||++|+||.+|..|+.
T Consensus 1 ~~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL 75 (173)
T PRK00294 1 MGTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLL 75 (173)
T ss_pred CCCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHH
Confidence 356899999999987 567999999999999999999753 23569999999999999999999995
No 123
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.19 E-value=3.5e-11 Score=107.44 Aligned_cols=65 Identities=18% Similarity=0.291 Sum_probs=56.1
Q ss_pred CCcccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--h------HHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 34 SFPPSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--S------TADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 34 ~~~~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--~------~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
+...|||++|||++. ++..+|+++||++++++|||+.+. . .+.+..|++||++|+||.+|..|..
T Consensus 3 ~~~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll 77 (176)
T PRK03578 3 SLKDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLL 77 (176)
T ss_pred CCCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHH
Confidence 456799999999985 578999999999999999998752 1 2336899999999999999999995
No 124
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.19 E-value=2.5e-11 Score=118.55 Aligned_cols=68 Identities=31% Similarity=0.482 Sum_probs=62.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
.=|||+|||++.+++..+||++||+|+.++||||-+. -++++.+|.+||+.|+|...|++|-+||+-+
T Consensus 97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtPd 172 (610)
T COG5407 97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTPD 172 (610)
T ss_pred CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCCC
Confidence 5599999999999999999999999999999998763 4677999999999999999999999999865
No 125
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.18 E-value=2.5e-11 Score=99.59 Aligned_cols=52 Identities=27% Similarity=0.296 Sum_probs=48.8
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~ 88 (423)
..++|++|||+++++.+|||++||+|++++|||++ ++.+.|.+|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkg-Gs~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNG-GSTYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHHHh
Confidence 56899999999999999999999999999999985 77889999999999985
No 126
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.17 E-value=2.5e-11 Score=101.46 Aligned_cols=79 Identities=15% Similarity=0.202 Sum_probs=65.7
Q ss_pred CCcccccCC--CCcEEEEEec-------CCCccccccHHHHHHHHHHhhccceEEEEEcccch----hhhHHHhhCCCCc
Q 014549 144 EDFPSIFHD--SKPWLIQVYS-------DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----LATHLAERKPIGQ 210 (423)
Q Consensus 144 ~nf~~~v~~--~~~~lV~FYa-------pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----~~~~l~~~~~~~~ 210 (423)
++|.+.|.+ +++++|.||| +||++|+.+.|.+++++.++.+.+.|.+||.++.+ ....+.++++
T Consensus 10 ~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~--- 86 (119)
T cd02952 10 EEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPK--- 86 (119)
T ss_pred HHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccC---
Confidence 456666743 6899999999 99999999999999999999877899999997532 1346888888
Q ss_pred ccccc-CccEEEEeCCCCC
Q 014549 211 IFFRR-GLPSLVAFPPGCK 228 (423)
Q Consensus 211 ~~~i~-~~Pti~~f~~g~~ 228 (423)
|+ ++||+++|..|+.
T Consensus 87 ---I~~~iPT~~~~~~~~~ 102 (119)
T cd02952 87 ---LTTGVPTLLRWKTPQR 102 (119)
T ss_pred ---cccCCCEEEEEcCCce
Confidence 98 9999999977653
No 127
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=99.09 E-value=6.4e-09 Score=93.52 Aligned_cols=170 Identities=14% Similarity=0.237 Sum_probs=122.5
Q ss_pred ccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCC-CCHHHHHHH
Q 014549 170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGE-LSVDAVTDW 248 (423)
Q Consensus 170 ~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~-~~~~~l~~f 248 (423)
.....|.++|+.+.+.+.|+.+.-. . +|++++ +.. |+|++|+++... ...|.|. .+.+.|.+|
T Consensus 7 ~~~~~f~~~A~~~~~~~~F~~~~~~---~---~~~~~~------~~~-p~i~~~k~~~~~---~~~y~~~~~~~~~l~~f 70 (184)
T PF13848_consen 7 ELFEIFEEAAEKLKGDYQFGVTFNE---E---LAKKYG------IKE-PTIVVYKKFDEK---PVVYDGDKFTPEELKKF 70 (184)
T ss_dssp HHHHHHHHHHHHHTTTSEEEEEE-H---H---HHHHCT------CSS-SEEEEEECTTTS---EEEESSSTTSHHHHHHH
T ss_pred HHHHHHHHHHHhCcCCcEEEEEcHH---H---HHHHhC------CCC-CcEEEeccCCCC---ceecccccCCHHHHHHH
Confidence 3567899999999999999998733 2 888898 778 999999986442 5789997 899999999
Q ss_pred HHHhhccCCceeecccchhhhhhhhhcCCCceEEEEEecCCC----CCchHHHHHHHhccccceEEEEEccccccHHHHh
Q 014549 249 FATAILKLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSKTGE----RASPFVRQISRNYWAYASFAFVLWREEESSIWWN 324 (423)
Q Consensus 249 i~~~~~~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~~~~----~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~ 324 (423)
+... ..|....+|.++ ...+.... ..++++++.+... .....++.+|.++++.+.|+.+... ..+.+++
T Consensus 71 I~~~--~~P~v~~~t~~n-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~--~~~~~~~ 143 (184)
T PF13848_consen 71 IKKN--SFPLVPELTPEN-FEKLFSSP--KPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDAD--DFPRLLK 143 (184)
T ss_dssp HHHH--SSTSCEEESTTH-HHHHHSTS--SEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETT--TTHHHHH
T ss_pred HHHh--ccccccccchhh-HHHHhcCC--CceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehH--HhHHHHH
Confidence 9988 577766677665 45555432 1235555543211 1123345688889888888888644 2366889
Q ss_pred hcCCC--CCCeEEEecCCCcce-eEecCCCChhHHHHHHHh
Q 014549 325 TFEVE--SAPAIVFLKDPGVKP-VVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 325 ~f~v~--~~Ptl~lfk~~~~~~-~~y~g~~~~~~l~~fi~~ 362 (423)
.||++ ..|+++++....... ..+.++++.+.|.+|++.
T Consensus 144 ~~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 144 YFGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp HTTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred HcCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 99998 699999998544332 223788999999999974
No 128
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-10 Score=112.98 Aligned_cols=68 Identities=35% Similarity=0.577 Sum_probs=61.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|+|++|||.++|+..+|++|||+++++||||++++. ..+|.++.+||++|+|+.+|..||.+|+.+
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~ 73 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEG 73 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccc
Confidence 46999999999999999999999999999999998743 346999999999999999999999999843
No 129
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.3e-10 Score=113.10 Aligned_cols=69 Identities=29% Similarity=0.462 Sum_probs=62.5
Q ss_pred cCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhhhc
Q 014549 31 LPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYDVY 99 (423)
Q Consensus 31 ~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd~~ 99 (423)
+..|...|||++||+.+.++..|||+|||++++.||||++.+. +.+|+++-+||.+|+||.+|..||.-
T Consensus 367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 4456688999999999999999999999999999999998753 45699999999999999999999984
No 130
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.03 E-value=7.2e-10 Score=85.44 Aligned_cols=72 Identities=18% Similarity=0.151 Sum_probs=58.0
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~ 237 (423)
|.||++||++|+.+.|.|+++++++...+.+..|| + .+.+.+++ +.+.||+++ +|+. .+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~-~-----~~~a~~~~------v~~vPti~i--~G~~------~~~ 62 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT-D-----MNEILEAG------VTATPGVAV--DGEL------VIM 62 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC-C-----HHHHHHcC------CCcCCEEEE--CCEE------EEE
Confidence 78999999999999999999999998778888887 2 11367788 999999999 6654 477
Q ss_pred CC-CCHHHHHHHH
Q 014549 238 GE-LSVDAVTDWF 249 (423)
Q Consensus 238 G~-~~~~~l~~fi 249 (423)
|. .+.+.|.+++
T Consensus 63 G~~~~~~~l~~~l 75 (76)
T TIGR00412 63 GKIPSKEEIKEIL 75 (76)
T ss_pred eccCCHHHHHHHh
Confidence 85 4557777765
No 131
>PHA02624 large T antigen; Provisional
Probab=99.02 E-value=1.9e-10 Score=118.74 Aligned_cols=63 Identities=13% Similarity=0.227 Sum_probs=58.5
Q ss_pred CCCcccccccccccCCC--CHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhh
Q 014549 33 RSFPPSHYDALGIKPYS--SVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNY 96 (423)
Q Consensus 33 ~~~~~d~y~~lg~~~~a--~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~y 96 (423)
.+...++|++|||+++| +..+||+|||++++++|||++ ++.++|++|+.||++|+|+.+|..|
T Consensus 7 ree~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKg-Gdeekfk~Ln~AYevL~d~~k~~r~ 71 (647)
T PHA02624 7 REESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKG-GDEEKMKRLNSLYKKLQEGVKSARQ 71 (647)
T ss_pred hHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCC-CcHHHHHHHHHHHHHHhcHHHhhhc
Confidence 33456899999999999 999999999999999999996 6789999999999999999999998
No 132
>PHA02125 thioredoxin-like protein
Probab=98.99 E-value=9.3e-10 Score=84.57 Aligned_cols=69 Identities=17% Similarity=0.266 Sum_probs=52.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y 236 (423)
+|.||+|||++|+.+.|.+++++ ..+..||+++ ..+++++++ |.++||++ .|+. ...+
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~------~~~~~vd~~~---~~~l~~~~~------v~~~PT~~---~g~~----~~~~ 59 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE------YTYVDVDTDE---GVELTAKHH------IRSLPTLV---NTST----LDRF 59 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh------heEEeeeCCC---CHHHHHHcC------CceeCeEE---CCEE----EEEE
Confidence 68999999999999999997653 4678999884 456999999 99999997 3432 2356
Q ss_pred cC-CCCHHHHHH
Q 014549 237 EG-ELSVDAVTD 247 (423)
Q Consensus 237 ~G-~~~~~~l~~ 247 (423)
.| +++..+|.+
T Consensus 60 ~G~~~~~~~l~~ 71 (75)
T PHA02125 60 TGVPRNVAELKE 71 (75)
T ss_pred eCCCCcHHHHHH
Confidence 77 345555554
No 133
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=98.98 E-value=3.8e-10 Score=107.78 Aligned_cols=54 Identities=26% Similarity=0.417 Sum_probs=48.7
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHcCC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELLTD 89 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L~~ 89 (423)
..|+|++|||++++|.+|||+|||+|+++||||+.. .+.++|++|++||++|+.
T Consensus 199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999853 146789999999999975
No 134
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=98.98 E-value=2.2e-09 Score=99.70 Aligned_cols=81 Identities=14% Similarity=0.076 Sum_probs=68.1
Q ss_pred CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCc
Q 014549 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCM 233 (423)
Q Consensus 154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~ 233 (423)
...++.||++||++|+.+.|.+++++.+ .+.+.+..||.+ ...+++++++ |.++||++++.+|.
T Consensus 134 pv~I~~F~a~~C~~C~~~~~~l~~l~~~-~~~i~~~~vD~~---~~~~~~~~~~------V~~vPtl~i~~~~~------ 197 (215)
T TIGR02187 134 PVRIEVFVTPTCPYCPYAVLMAHKFALA-NDKILGEMIEAN---ENPDLAEKYG------VMSVPKIVINKGVE------ 197 (215)
T ss_pred CcEEEEEECCCCCCcHHHHHHHHHHHHh-cCceEEEEEeCC---CCHHHHHHhC------CccCCEEEEecCCE------
Confidence 3445559999999999999999999987 456888899999 4566999999 99999999987652
Q ss_pred ccccCCCCHHHHHHHHHH
Q 014549 234 TRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 234 ~~y~G~~~~~~l~~fi~~ 251 (423)
.|.|..+.+.|.+|+.+
T Consensus 198 -~~~G~~~~~~l~~~l~~ 214 (215)
T TIGR02187 198 -EFVGAYPEEQFLEYILS 214 (215)
T ss_pred -EEECCCCHHHHHHHHHh
Confidence 38899999999999865
No 135
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=98.96 E-value=1.4e-09 Score=114.91 Aligned_cols=101 Identities=16% Similarity=0.232 Sum_probs=78.8
Q ss_pred cCCccccc----CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccc-hhhhHHHhhCCCCccccc
Q 014549 143 SEDFPSIF----HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDI-RLATHLAERKPIGQIFFR 214 (423)
Q Consensus 143 ~~nf~~~v----~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~~~~~~i 214 (423)
.+++++.+ .++++++|+|||+||++|+.++|.. +++.+.+++ +.+.++|++++ ....+++++++ |
T Consensus 460 ~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~-~~~v~vDvt~~~~~~~~l~~~~~------v 532 (571)
T PRK00293 460 VAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALAD-TVLLQADVTANNAEDVALLKHYN------V 532 (571)
T ss_pred HHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcC-CEEEEEECCCCChhhHHHHHHcC------C
Confidence 35566655 3468999999999999999999875 677777764 67899999844 34567999999 9
Q ss_pred cCccEEEEeCC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 215 RGLPSLVAFPP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 215 ~~~Pti~~f~~-g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.++||+++|.+ |+.. ...++.|..+.+++.+++.+.
T Consensus 533 ~g~Pt~~~~~~~G~~i--~~~r~~G~~~~~~f~~~L~~~ 569 (571)
T PRK00293 533 LGLPTILFFDAQGQEI--PDARVTGFMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCEEEEECCCCCCc--ccccccCCCCHHHHHHHHHHh
Confidence 99999999974 4431 123677999999999998764
No 136
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=98.95 E-value=1e-09 Score=91.95 Aligned_cols=91 Identities=16% Similarity=0.142 Sum_probs=61.9
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC--ccEEEEeC-CCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG--LPSLVAFP-PGC 227 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~--~Pti~~f~-~g~ 227 (423)
.++++++|.|||+||++|+.+.|.+.+.+........|..||.+.++. .+.+.++ +.+ +||+++|. +|+
T Consensus 17 ~~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~--~~~~~~~------~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 17 DSGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEE--PKDEEFS------PDGGYIPRILFLDPSGD 88 (117)
T ss_pred HcCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCC--chhhhcc------cCCCccceEEEECCCCC
Confidence 678999999999999999999999999877654444666677664321 2445666 665 99999996 555
Q ss_pred CCCCCcccccCCCCHHHHHHHHH
Q 014549 228 KSSDCMTRFEGELSVDAVTDWFA 250 (423)
Q Consensus 228 ~~~~~~~~y~G~~~~~~l~~fi~ 250 (423)
.. .......|..+.+.+.+++.
T Consensus 89 ~~-~~~~~~~~~~~~~~f~~~~~ 110 (117)
T cd02959 89 VH-PEIINKKGNPNYKYFYSSAA 110 (117)
T ss_pred Cc-hhhccCCCCccccccCCCHH
Confidence 42 11223345555555544443
No 137
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.94 E-value=3.9e-10 Score=102.21 Aligned_cols=102 Identities=12% Similarity=0.251 Sum_probs=88.8
Q ss_pred cceeeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 135 VHAFNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.+.+..++.+|+..++.. -|+++|+||||+.|+.+.|.|+..|.--.+. +++|.||.+.++ +.+.||.
T Consensus 23 ~s~~~~~~eenw~~~l~g--ewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~np---------gLsGRF~ 91 (248)
T KOG0913|consen 23 SSKLTRIDEENWKELLTG--EWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNP---------GLSGRFL 91 (248)
T ss_pred cceeEEecccchhhhhch--HHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEecc---------ccceeeE
Confidence 346899999999998854 4999999999999999999999999876665 799999999665 5566778
Q ss_pred ccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+...|||.=..+|.-. +|.|.|+.++++.|+..+
T Consensus 92 vtaLptIYHvkDGeFr-----rysgaRdk~dfisf~~~r 125 (248)
T KOG0913|consen 92 VTALPTIYHVKDGEFR-----RYSGARDKNDFISFEEHR 125 (248)
T ss_pred EEecceEEEeeccccc-----cccCcccchhHHHHHHhh
Confidence 9999999999999764 899999999999999765
No 138
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=98.90 E-value=1.9e-09 Score=89.10 Aligned_cols=89 Identities=21% Similarity=0.254 Sum_probs=62.8
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHH---HHHhhccceEEEEEcccch-----------------hhhHHHhhCCCCc
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI---AALLEGIANTGMVELGDIR-----------------LATHLAERKPIGQ 210 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~---A~~l~~~~~~~~Vdc~~~~-----------------~~~~l~~~~~~~~ 210 (423)
.++++.++.|++|||++|+.+.+...+. +..++..+.+..++++... ...++++.++
T Consensus 3 ~~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--- 79 (112)
T PF13098_consen 3 GNGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYG--- 79 (112)
T ss_dssp TTSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT---
T ss_pred CCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcC---
Confidence 3578999999999999999999888754 4444445778888877433 1346888888
Q ss_pred cccccCccEEEEeC-CCCCCCCCcccccCCCCHHHHHHHH
Q 014549 211 IFFRRGLPSLVAFP-PGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 211 ~~~i~~~Pti~~f~-~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
|.++||++++. +|+. ...+.|..+.++|.+++
T Consensus 80 ---v~gtPt~~~~d~~G~~----v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 80 ---VNGTPTIVFLDKDGKI----VYRIPGYLSPEELLKML 112 (112)
T ss_dssp -----SSSEEEECTTTSCE----EEEEESS--HHHHHHHH
T ss_pred ---CCccCEEEEEcCCCCE----EEEecCCCCHHHHHhhC
Confidence 99999999996 4543 34578999999998764
No 139
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=98.82 E-value=2e-08 Score=89.61 Aligned_cols=92 Identities=9% Similarity=0.132 Sum_probs=74.2
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-------------------hhhHHHhhCCCCcc
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-------------------LATHLAERKPIGQI 211 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-------------------~~~~l~~~~~~~~~ 211 (423)
.+++++|.||++||+.|+...|.+.++++++.+. +.+..|++++.. ....+++.++
T Consensus 60 ~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---- 135 (173)
T PRK03147 60 KGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYG---- 135 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcC----
Confidence 4688999999999999999999999999999865 788899887432 1245677777
Q ss_pred ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
|.++|+++++.+++.. ...+.|..+.+.+.+++.+.
T Consensus 136 --v~~~P~~~lid~~g~i---~~~~~g~~~~~~l~~~l~~~ 171 (173)
T PRK03147 136 --VGPLPTTFLIDKDGKV---VKVITGEMTEEQLEEYLEKI 171 (173)
T ss_pred --CCCcCeEEEECCCCcE---EEEEeCCCCHHHHHHHHHHh
Confidence 8999999988755542 44678999999999988754
No 140
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=4.3e-09 Score=92.73 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=56.6
Q ss_pred CcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCCCh----HHHHHHHHHHHHHcCChhhHhhhh
Q 014549 35 FPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPS----TADFLKIQYAYELLTDPLWKRNYD 97 (423)
Q Consensus 35 ~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~----~~~f~~i~~Ay~~L~~~~~r~~yd 97 (423)
.+-|||+||.+.|..+.++||+.||+|+...|||+|+++ ..+|.-|.+||..|-|+..|+.-+
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~ 117 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCL 117 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 478999999999999999999999999999999999964 456999999999999998776654
No 141
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.76 E-value=5e-09 Score=93.79 Aligned_cols=85 Identities=20% Similarity=0.267 Sum_probs=73.8
Q ss_pred ccCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCcc
Q 014549 142 TSEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLP 218 (423)
Q Consensus 142 ~~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P 218 (423)
+.+.+++.+ +....|+|+||+-|.+.|.+++|.|.+++.++... .+||+||.. ..++.+++|+++..-+-+..|
T Consensus 131 ~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiG---rfpd~a~kfris~s~~srQLP 207 (265)
T KOG0914|consen 131 NMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIG---RFPDVAAKFRISLSPGSRQLP 207 (265)
T ss_pred chhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeec---cCcChHHheeeccCcccccCC
Confidence 444555555 66789999999999999999999999999998876 699999999 777899999988777788999
Q ss_pred EEEEeCCCCCC
Q 014549 219 SLVAFPPGCKS 229 (423)
Q Consensus 219 ti~~f~~g~~~ 229 (423)
|+++|..|+..
T Consensus 208 T~ilFq~gkE~ 218 (265)
T KOG0914|consen 208 TYILFQKGKEV 218 (265)
T ss_pred eEEEEccchhh
Confidence 99999999763
No 142
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=98.75 E-value=2.4e-08 Score=74.68 Aligned_cols=56 Identities=21% Similarity=0.233 Sum_probs=47.9
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++.||++||++|+.+.+.+++++.. .+.+.+..+|.++ .++++++++ +.++||+++
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~-~~~i~~~~id~~~---~~~l~~~~~------i~~vPti~i 58 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAAL-NPNISAEMIDAAE---FPDLADEYG------VMSVPAIVI 58 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHh-CCceEEEEEEccc---CHhHHHHcC------CcccCEEEE
Confidence 6789999999999999999999775 3458999999984 455899999 999999865
No 143
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.75 E-value=3.1e-08 Score=95.00 Aligned_cols=90 Identities=16% Similarity=0.094 Sum_probs=69.4
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--------hhhHHHhhCCCCccccccCccEEEEe
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--------LATHLAERKPIGQIFFRRGLPSLVAF 223 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--------~~~~l~~~~~~~~~~~i~~~Pti~~f 223 (423)
.+++.||.||++||++|+.+.|.++++++++. +.|..|+.+... ....+++++| |.++||++++
T Consensus 165 ~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~g------V~~vPtl~Lv 236 (271)
T TIGR02740 165 AKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLK------IRTVPAVFLA 236 (271)
T ss_pred cCCeEEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcC------CCcCCeEEEE
Confidence 36799999999999999999999999999875 456566655321 1245788888 9999999999
Q ss_pred CC-CCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 224 PP-GCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 224 ~~-g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+ |+.. .....|..+.+.|.+.+...
T Consensus 237 ~~~~~~v---~~v~~G~~s~~eL~~~i~~~ 263 (271)
T TIGR02740 237 DPDPNQF---TPIGFGVMSADELVDRILLA 263 (271)
T ss_pred ECCCCEE---EEEEeCCCCHHHHHHHHHHH
Confidence 87 4431 12345889999999988765
No 144
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=98.69 E-value=3.4e-08 Score=87.93 Aligned_cols=62 Identities=10% Similarity=0.161 Sum_probs=54.4
Q ss_pred ccccccccccCC--CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 37 PSHYDALGIKPY--SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 37 ~d~y~~lg~~~~--a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
.|||++||+++. .+..+++++||+|.+++|||+..+ +.+.-..|++||.+|+||.+|..|=.
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL 73 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAII 73 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHH
Confidence 489999999987 789999999999999999998642 23347899999999999999999975
No 145
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=98.68 E-value=7.5e-08 Score=79.69 Aligned_cols=63 Identities=13% Similarity=0.188 Sum_probs=45.7
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEE
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSL 220 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti 220 (423)
++++++|.||++||++|+...|.++++++.+++.+.+..+.-........++++++ +..+|++
T Consensus 20 ~gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~------~~~~p~~ 82 (114)
T cd02967 20 PGRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHG------LEAFPYV 82 (114)
T ss_pred CCCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhC------CCCCcEE
Confidence 46899999999999999999999999998876655555442122224455777777 4455654
No 146
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.66 E-value=1.2e-07 Score=82.97 Aligned_cols=95 Identities=13% Similarity=0.100 Sum_probs=64.0
Q ss_pred ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh---------hhHH-HhhCCCCccccccCcc
Q 014549 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL---------ATHL-AERKPIGQIFFRRGLP 218 (423)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~---------~~~l-~~~~~~~~~~~i~~~P 218 (423)
.+...+..+|.|||+||++|++..|.++++++++. +.|..|+.++... .... ...++. ..+.++|
T Consensus 46 ~~~l~~~~lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~---~~v~~iP 120 (153)
T TIGR02738 46 HANQDDYALVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPN---PRPVVTP 120 (153)
T ss_pred hhhcCCCEEEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhcc---CCCCCCC
Confidence 34456667999999999999999999999998873 4555566553210 0122 233311 0288999
Q ss_pred EEEEeCCC-CCCCCCcccccCCCCHHHHHHHHHH
Q 014549 219 SLVAFPPG-CKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 219 ti~~f~~g-~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
|.+++.+. ... ...+.|..+.+++.+.+.+
T Consensus 121 Tt~LID~~G~~i---~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 121 ATFLVNVNTRKA---YPVLQGAVDEAELANRMDE 151 (153)
T ss_pred eEEEEeCCCCEE---EEEeecccCHHHHHHHHHH
Confidence 99999654 321 1246799999988877654
No 147
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=98.66 E-value=7.3e-08 Score=80.90 Aligned_cols=93 Identities=17% Similarity=0.129 Sum_probs=64.7
Q ss_pred eccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEE--------------------cccchhhh
Q 014549 141 VTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVE--------------------LGDIRLAT 200 (423)
Q Consensus 141 L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vd--------------------c~~~~~~~ 200 (423)
++.+++......+++++|.||++||++|+.+.|.+.++++.+. .+.|..-+ ++ ...
T Consensus 8 ~~g~~~~~~~~~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~ 83 (123)
T cd03011 8 LDGEQFDLESLSGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVIND---PDG 83 (123)
T ss_pred CCCCEeeHHHhCCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEEC---CCc
Confidence 3334444333345899999999999999999999999987732 11221111 12 224
Q ss_pred HHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (423)
Q Consensus 201 ~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~ 247 (423)
.+++.|+ |.++|++.++.+++. ...+.|..+.+.|.+
T Consensus 84 ~~~~~~~------i~~~P~~~vid~~gi----~~~~~g~~~~~~~~~ 120 (123)
T cd03011 84 VISARWG------VSVTPAIVIVDPGGI----VFVTTGVTSEWGLRL 120 (123)
T ss_pred HHHHhCC------CCcccEEEEEcCCCe----EEEEeccCCHHHHHh
Confidence 5788888 899999999987763 456778888888764
No 148
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=98.64 E-value=1.3e-07 Score=75.21 Aligned_cols=76 Identities=14% Similarity=0.090 Sum_probs=61.7
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
+.+-+..|++|||++|....+.+++++... +.+.+..+|.+ ...+++++|+ |.++||+++ +|+.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~-~~i~~~~vd~~---~~~e~a~~~~------V~~vPt~vi--dG~~---- 75 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLN-PNIEHEMIDGA---LFQDEVEERG------IMSVPAIFL--NGEL---- 75 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHC-CCceEEEEEhH---hCHHHHHHcC------CccCCEEEE--CCEE----
Confidence 445678899999999999999999999765 35899999988 5567999999 999999965 6654
Q ss_pred cccccCCCCHHHHH
Q 014549 233 MTRFEGELSVDAVT 246 (423)
Q Consensus 233 ~~~y~G~~~~~~l~ 246 (423)
.+.|..+.++++
T Consensus 76 --~~~G~~~~~e~~ 87 (89)
T cd03026 76 --FGFGRMTLEEIL 87 (89)
T ss_pred --EEeCCCCHHHHh
Confidence 567866766654
No 149
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.64 E-value=2.7e-07 Score=82.91 Aligned_cols=111 Identities=17% Similarity=0.223 Sum_probs=85.8
Q ss_pred CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCC-CChhHHHHHHHhhccccCcc
Q 014549 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGS-FNNSRLSEVMEQNKLQELPQ 370 (423)
Q Consensus 292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~~~l~~fi~~~~~~~lp~ 370 (423)
....+..+|..+.+.+.|+.+. +.+++++++++. |+|++|++++.++..|.|. ++.+.|.+||..+.+|.+++
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~-----~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~P~v~~ 81 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF-----NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSFPLVPE 81 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE------HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSSTSCEE
T ss_pred HHHHHHHHHHhCcCCcEEEEEc-----HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhccccccc
Confidence 3455677899998888998885 456899999987 9999999988889999998 89999999999999999999
Q ss_pred cccccccccCCCCCCccCCCCCCcceEEEEEEcc-CChhhHHHHHHHhhh
Q 014549 371 LRSVTSMELGCDARGYSRAGSDTTIWYCVILAGR-LSPELNKMREVSISA 419 (423)
Q Consensus 371 l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~~-~~~~~~~~~~~~~~~ 419 (423)
++..+...+.- .++ ++.++++.+ +....+.+++.++++
T Consensus 82 ~t~~n~~~~~~-------~~~----~~~~~~~~~~~~~~~~~~~~~l~~~ 120 (184)
T PF13848_consen 82 LTPENFEKLFS-------SPK----PPVLILFDNKDNESTEAFKKELQDI 120 (184)
T ss_dssp ESTTHHHHHHS-------TSS----EEEEEEEETTTHHHHHHHHHHHHHH
T ss_pred cchhhHHHHhc-------CCC----ceEEEEEEcCCchhHHHHHHHHHHH
Confidence 99998877741 111 456666653 344556666665554
No 150
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=98.64 E-value=1.2e-07 Score=97.94 Aligned_cols=89 Identities=20% Similarity=0.112 Sum_probs=68.6
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEE----------------------------cccchhhhH
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVE----------------------------LGDIRLATH 201 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vd----------------------------c~~~~~~~~ 201 (423)
+.+++++|.|||+||++|++..|.+++++++++. .+.|..|+ ++ ....
T Consensus 54 skGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D---~~~~ 130 (521)
T PRK14018 54 KKDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTD---NGGT 130 (521)
T ss_pred cCCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceecc---ccHH
Confidence 4788999999999999999999999999998863 24444443 22 2344
Q ss_pred HHhhCCCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 202 LAERKPIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 202 l~~~~~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+++.++ |+++||++++ ++|+. ...+.|..+.+.|.+++...
T Consensus 131 lak~fg------V~giPTt~IIDkdGkI----V~~~~G~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 131 LAQSLN------ISVYPSWAIIGKDGDV----QRIVKGSISEAQALALIRNP 172 (521)
T ss_pred HHHHcC------CCCcCeEEEEcCCCeE----EEEEeCCCCHHHHHHHHHHh
Confidence 677777 9999999666 55654 45677999999999999743
No 151
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=98.64 E-value=3.8e-08 Score=83.08 Aligned_cols=75 Identities=17% Similarity=0.243 Sum_probs=57.0
Q ss_pred CcccccCCCCcEEEEEecCCCccccccHH-HHH--HHHHHhhccceEEEEEcccchhhhHHHh--------hCCCCcccc
Q 014549 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AWK--TIAALLEGIANTGMVELGDIRLATHLAE--------RKPIGQIFF 213 (423)
Q Consensus 145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p-~~~--~~A~~l~~~~~~~~Vdc~~~~~~~~l~~--------~~~~~~~~~ 213 (423)
.+....++++++||.||++||+.|+.|.+ .|. ++++.+.....+.+||.++++ ++++ .++
T Consensus 7 al~~Ak~~~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~---~~~~~~~~~~~~~~~------ 77 (124)
T cd02955 7 AFEKARREDKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERP---DVDKIYMNAAQAMTG------ 77 (124)
T ss_pred HHHHHHHcCCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCc---HHHHHHHHHHHHhcC------
Confidence 44455578999999999999999999987 343 567777767778889988543 3433 246
Q ss_pred ccCccEEEEeCCCCC
Q 014549 214 RRGLPSLVAFPPGCK 228 (423)
Q Consensus 214 i~~~Pti~~f~~g~~ 228 (423)
+.|+||++++.+...
T Consensus 78 ~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 78 QGGWPLNVFLTPDLK 92 (124)
T ss_pred CCCCCEEEEECCCCC
Confidence 889999999977654
No 152
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=98.62 E-value=1.2e-07 Score=80.62 Aligned_cols=71 Identities=11% Similarity=0.107 Sum_probs=54.8
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchh---------------------hhHHHhhCC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL---------------------ATHLAERKP 207 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~---------------------~~~l~~~~~ 207 (423)
.+++++|.||++||+.|+...|.+.++.+++.+. +.+..|+.+.+.. ...+++.|+
T Consensus 17 ~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (131)
T cd03009 17 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNRTFK 96 (131)
T ss_pred CCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHHHcC
Confidence 3678999999999999999999999999888643 5566666653311 245677787
Q ss_pred CCccccccCccEEEEeCCCCC
Q 014549 208 IGQIFFRRGLPSLVAFPPGCK 228 (423)
Q Consensus 208 ~~~~~~i~~~Pti~~f~~g~~ 228 (423)
|.++|+++++.+++.
T Consensus 97 ------v~~~P~~~lid~~G~ 111 (131)
T cd03009 97 ------IEGIPTLIILDADGE 111 (131)
T ss_pred ------CCCCCEEEEECCCCC
Confidence 999999999975443
No 153
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=98.60 E-value=9.1e-08 Score=80.95 Aligned_cols=82 Identities=15% Similarity=0.149 Sum_probs=57.1
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-h-------------------hhhHHHhhCCCCcc
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-R-------------------LATHLAERKPIGQI 211 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~-------------------~~~~l~~~~~~~~~ 211 (423)
.+++++|.||++||++|+...|.++++++... +.|..|+.+.. . ....+++.|+
T Consensus 24 ~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~~--~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~---- 97 (127)
T cd03010 24 KGKPYLLNVWASWCAPCREEHPVLMALARQGR--VPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLG---- 97 (127)
T ss_pred CCCEEEEEEEcCcCHHHHHHHHHHHHHHHhcC--cEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcC----
Confidence 36789999999999999999999999987752 55555553211 0 1233566666
Q ss_pred ccccCccEEEEe-CCCCCCCCCcccccCCCCHHHH
Q 014549 212 FFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAV 245 (423)
Q Consensus 212 ~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l 245 (423)
+.++|+.+++ ++|.. ...+.|..+.+.|
T Consensus 98 --v~~~P~~~~ld~~G~v----~~~~~G~~~~~~~ 126 (127)
T cd03010 98 --VYGVPETFLIDGDGII----RYKHVGPLTPEVW 126 (127)
T ss_pred --CCCCCeEEEECCCceE----EEEEeccCChHhc
Confidence 8999965555 56654 3467788876654
No 154
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=98.59 E-value=2.5e-07 Score=78.33 Aligned_cols=99 Identities=9% Similarity=0.075 Sum_probs=84.0
Q ss_pred eccCCcccccCCCCcEEEEEecC--CCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCCCCccccccCc
Q 014549 141 VTSEDFPSIFHDSKPWLIQVYSD--GSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKPIGQIFFRRGL 217 (423)
Q Consensus 141 L~~~nf~~~v~~~~~~lV~FYap--wC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~ 217 (423)
++..+++..+......++.|-.+ .++.+...+=..+++++++.+ .+++++||++ .+..|+.+|| |.++
T Consensus 22 ~~~~~~~~~~~~~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD---~~~~LA~~fg------V~si 92 (132)
T PRK11509 22 VSESRLDDWLTQAPDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLE---QSEAIGDRFG------VFRF 92 (132)
T ss_pred cccccHHHHHhCCCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECC---CCHHHHHHcC------CccC
Confidence 56677888887777777776654 478888899999999999985 4899999999 5566999999 9999
Q ss_pred cEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 218 PSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 218 Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
||+++|++|+. .....|.++.+.+.+|+.+.
T Consensus 93 PTLl~FkdGk~----v~~i~G~~~k~~l~~~I~~~ 123 (132)
T PRK11509 93 PATLVFTGGNY----RGVLNGIHPWAELINLMRGL 123 (132)
T ss_pred CEEEEEECCEE----EEEEeCcCCHHHHHHHHHHH
Confidence 99999999987 56778999999999999877
No 155
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=98.57 E-value=2.1e-07 Score=79.44 Aligned_cols=70 Identities=16% Similarity=0.139 Sum_probs=54.0
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccchh----------------------hhHHHhhC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDIRL----------------------ATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~~~----------------------~~~l~~~~ 206 (423)
.+++++|.||++||++|+...|.++++++.+++. +.+..|+.+++.. ...+.+.|
T Consensus 16 ~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 95 (132)
T cd02964 16 EGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLEKQF 95 (132)
T ss_pred CCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHHHHc
Confidence 4689999999999999999999999999988753 5677777664320 12345556
Q ss_pred CCCccccccCccEEEEeCCCC
Q 014549 207 PIGQIFFRRGLPSLVAFPPGC 227 (423)
Q Consensus 207 ~~~~~~~i~~~Pti~~f~~g~ 227 (423)
+ |.++||++++.+++
T Consensus 96 ~------v~~iPt~~lid~~G 110 (132)
T cd02964 96 K------VEGIPTLVVLKPDG 110 (132)
T ss_pred C------CCCCCEEEEECCCC
Confidence 6 99999999997543
No 156
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=98.56 E-value=6e-08 Score=89.35 Aligned_cols=68 Identities=25% Similarity=0.247 Sum_probs=60.2
Q ss_pred cccccccccccC---CCCHHHHHHHHHHHHHhcCCCCC-----CChHHHHHHHHHHHHHcCChhhHhhhhhcCCch
Q 014549 36 PPSHYDALGIKP---YSSVEQVKEAYEKFSSKWNSGEE-----IPSTADFLKIQYAYELLTDPLWKRNYDVYGIDE 103 (423)
Q Consensus 36 ~~d~y~~lg~~~---~a~~~~ik~ayr~l~~~~hPd~~-----~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~ 103 (423)
..|+|.+||++. .++..+|.++.++...+||||+. .++.+.|..|++||++|+|+..|.+||.-..+.
T Consensus 42 ~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~a 117 (379)
T COG5269 42 KVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDA 117 (379)
T ss_pred hhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhcccccccc
Confidence 679999999985 57889999999999999999986 367888999999999999999999999865443
No 157
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=98.55 E-value=1.3e-07 Score=83.13 Aligned_cols=51 Identities=16% Similarity=0.341 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhhc
Q 014549 49 SSVEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDVY 99 (423)
Q Consensus 49 a~~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~~ 99 (423)
.+..+|+++||++++++|||+.++ +.+.+..|++||++|+||.+|..|...
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~ 61 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLS 61 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHH
Confidence 467899999999999999998542 345699999999999999999999963
No 158
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=98.53 E-value=2.1e-07 Score=75.90 Aligned_cols=69 Identities=17% Similarity=0.128 Sum_probs=56.2
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhh-ccceEEEEEcccc--hh------------------hhHHHhhCCCCcc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDI--RL------------------ATHLAERKPIGQI 211 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~--~~------------------~~~l~~~~~~~~~ 211 (423)
+++++|.||++||++|+...+.+.++.+.++ ..+.+..|+++.+ .. ...+++.|+
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 94 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYG---- 94 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcC----
Confidence 6899999999999999999999999999987 3479999999853 00 144677777
Q ss_pred ccccCccEEEEeCCCC
Q 014549 212 FFRRGLPSLVAFPPGC 227 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~ 227 (423)
+.++|+++++.++.
T Consensus 95 --~~~~P~~~l~d~~g 108 (116)
T cd02966 95 --VRGLPTTFLIDRDG 108 (116)
T ss_pred --cCccceEEEECCCC
Confidence 88999999996543
No 159
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=98.52 E-value=8.2e-07 Score=73.74 Aligned_cols=98 Identities=16% Similarity=0.149 Sum_probs=70.4
Q ss_pred cccchhhhhhhhhcCCCceEEEEEe--cCCCCCchHHHHHHHhccc---cceEEEEEccc---cccHHHHhhcCCC--CC
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFS--KTGERASPFVRQISRNYWA---YASFAFVLWRE---EESSIWWNTFEVE--SA 331 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~--~~~~~~~~~~~~~a~~~~~---~~~f~~v~~~~---~~~~~l~~~f~v~--~~ 331 (423)
+++.+ +++++.+.+ .++|-|+. +.+.. .|.++.+|.+|.. .+.++.|...+ .+..+|+++|+|+ ++
T Consensus 6 L~~~n-F~~~v~~~~--~vlV~F~A~~Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d~~~~~~~~L~~~y~I~~~gy 81 (116)
T cd03007 6 LDTVT-FYKVIPKFK--YSLVKFDTAYPYGEK-HEAFTRLAESSASATDDLLVAEVGIKDYGEKLNMELGERYKLDKESY 81 (116)
T ss_pred CChhh-HHHHHhcCC--cEEEEEeCCCCCCCC-hHHHHHHHHHHHhhcCceEEEEEecccccchhhHHHHHHhCCCcCCC
Confidence 45544 566665432 36777888 65543 4778888877643 35566665422 2337899999999 89
Q ss_pred CeEEEecCC-CcceeEecCC-CChhHHHHHHHhh
Q 014549 332 PAIVFLKDP-GVKPVVYYGS-FNNSRLSEVMEQN 363 (423)
Q Consensus 332 Ptl~lfk~~-~~~~~~y~g~-~~~~~l~~fi~~~ 363 (423)
|||++|+++ ...|+.|.|. ++.+.|.+||+++
T Consensus 82 PTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 82 PVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999987 3567889996 9999999999875
No 160
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=98.43 E-value=4.7e-07 Score=81.16 Aligned_cols=95 Identities=20% Similarity=0.138 Sum_probs=62.7
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc-hhhhHHHhhCCC-------------CccccccC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI-RLATHLAERKPI-------------GQIFFRRG 216 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~-~~~~~l~~~~~~-------------~~~~~i~~ 216 (423)
..+++++|.||++||++|+++.|.++++++. .+.+..|+-++. ......+++++. ...|++.+
T Consensus 61 ~~gk~vll~F~a~wC~~C~~~~p~l~~l~~~---~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~ 137 (173)
T TIGR00385 61 IQGKPVLLNVWASWCPPCRAEHPYLNELAKD---GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYG 137 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHc---CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCee
Confidence 3578999999999999999999999888753 255555553211 111122222211 02334889
Q ss_pred ccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 217 ~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+|+.+++ ++|+. ...+.|..+.+++.+++.+.
T Consensus 138 ~P~~~~id~~G~i----~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 138 APETFLVDGNGVI----LYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CCeEEEEcCCceE----EEEEeccCCHHHHHHHHHHH
Confidence 9965555 56654 34566989999999998765
No 161
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=98.42 E-value=1.1e-06 Score=73.15 Aligned_cols=92 Identities=8% Similarity=0.171 Sum_probs=71.1
Q ss_pred CCCCcEEEEEecCCCccccccHH-HH--HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC-C
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP-G 226 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p-~~--~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~-g 226 (423)
+.+++++|.|+++||..|+.|.. .| +++.+.++....+.++|.++. ....+++.++ +.++|++.++.+ +
T Consensus 15 ~~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~-e~~~~~~~~~------~~~~P~~~~i~~~~ 87 (114)
T cd02958 15 SEKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSS-EGQRFLQSYK------VDKYPHIAIIDPRT 87 (114)
T ss_pred hhCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCc-cHHHHHHHhC------ccCCCeEEEEeCcc
Confidence 56899999999999999999976 45 345666766666666776542 3466899999 999999999976 3
Q ss_pred CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 227 ~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
... .....|..+++.+..-+.+.
T Consensus 88 g~~---l~~~~G~~~~~~f~~~L~~~ 110 (114)
T cd02958 88 GEV---LKVWSGNITPEDLLSQLIEF 110 (114)
T ss_pred CcE---eEEEcCCCCHHHHHHHHHHH
Confidence 332 45677999999999888765
No 162
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=98.42 E-value=7.8e-07 Score=71.12 Aligned_cols=75 Identities=16% Similarity=0.195 Sum_probs=52.5
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhh--ccceEEEEEcccc-hhhhHHHhhCCCC---------------ccccc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLE--GIANTGMVELGDI-RLATHLAERKPIG---------------QIFFR 214 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~--~~~~~~~Vdc~~~-~~~~~l~~~~~~~---------------~~~~i 214 (423)
+++++|.|||+||++|++..|...++.+.++ +.+.|..|+++++ ....+..++.+.. ..+.|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4789999999999999999999999999999 6688888888754 1222222332111 33448
Q ss_pred cCccEEEEeCCCC
Q 014549 215 RGLPSLVAFPPGC 227 (423)
Q Consensus 215 ~~~Pti~~f~~g~ 227 (423)
.++|+++++.+++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 8999988886643
No 163
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=98.40 E-value=9.8e-07 Score=76.57 Aligned_cols=77 Identities=17% Similarity=0.178 Sum_probs=53.6
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhc--------cceEEEEEcccchh-hhHHHhhCCCC-------------
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRL-ATHLAERKPIG------------- 209 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~--------~~~~~~Vdc~~~~~-~~~l~~~~~~~------------- 209 (423)
.+++++|.|||+||+.|++..|...++.+.+.+ .+.+..|+-+++.. ..+..++.++.
T Consensus 24 kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~~~~~ 103 (146)
T cd03008 24 ENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDEFRRE 103 (146)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccchHHHH
Confidence 468999999999999999999999999887754 26777777664321 12222222210
Q ss_pred --ccccccCccEEEEeCCCCC
Q 014549 210 --QIFFRRGLPSLVAFPPGCK 228 (423)
Q Consensus 210 --~~~~i~~~Pti~~f~~g~~ 228 (423)
..|+|.++||.+++.+...
T Consensus 104 l~~~y~v~~iPt~vlId~~G~ 124 (146)
T cd03008 104 LEAQFSVEELPTVVVLKPDGD 124 (146)
T ss_pred HHHHcCCCCCCEEEEECCCCc
Confidence 2344889999999976543
No 164
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=98.38 E-value=1.5e-06 Score=78.80 Aligned_cols=95 Identities=16% Similarity=0.066 Sum_probs=64.0
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCC-------------ccccccC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIG-------------QIFFRRG 216 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~-------------~~~~i~~ 216 (423)
..+++++|.||++||++|++..|.+.++++. .+.|..|+-++++. .....++++.. ..++|.+
T Consensus 66 ~~gk~vvv~FwatwC~~C~~e~p~l~~l~~~---~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~ 142 (185)
T PRK15412 66 TQGKPVLLNVWATWCPTCRAEHQYLNQLSAQ---GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYG 142 (185)
T ss_pred cCCCEEEEEEECCCCHHHHHHHHHHHHHHHc---CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCc
Confidence 3578999999999999999999999988652 35666677543221 11122222211 2345999
Q ss_pred ccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 217 LPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 217 ~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+|+.+++ ++|.. ...+.|..+.+.+.+++...
T Consensus 143 ~P~t~vid~~G~i----~~~~~G~~~~~~l~~~i~~~ 175 (185)
T PRK15412 143 APETFLIDGNGII----RYRHAGDLNPRVWESEIKPL 175 (185)
T ss_pred CCeEEEECCCceE----EEEEecCCCHHHHHHHHHHH
Confidence 9966665 56654 34566999988888888765
No 165
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=98.36 E-value=4.5e-06 Score=69.98 Aligned_cols=94 Identities=15% Similarity=0.218 Sum_probs=67.4
Q ss_pred cccchhhhhhhhhcCCCceEEEEEec-C-----CC--CCchHHHHHHHhc--cccceEEEEEccccccHHHHhhcCCCCC
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSK-T-----GE--RASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESA 331 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~-~-----~~--~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~l~~~f~v~~~ 331 (423)
+|+.+ +++.+.++ ..++|++|.. . ++ .+.|.+..+|..+ .+.+.|+.|+... .++++++|+|.++
T Consensus 14 lt~~n-F~~~v~~~--~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~--~~~La~~~~I~~i 88 (120)
T cd03065 14 LNEKN-YKQVLKKY--DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKK--DAKVAKKLGLDEE 88 (120)
T ss_pred CChhh-HHHHHHhC--CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCC--CHHHHHHcCCccc
Confidence 45544 44444432 3477777763 2 22 3456667777777 6678888886443 3789999999999
Q ss_pred CeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
|||++|+++. .+.|.|.++.+.|.+||.+
T Consensus 89 PTl~lfk~G~--~v~~~G~~~~~~l~~~l~~ 117 (120)
T cd03065 89 DSIYVFKDDE--VIEYDGEFAADTLVEFLLD 117 (120)
T ss_pred cEEEEEECCE--EEEeeCCCCHHHHHHHHHH
Confidence 9999999765 4458999999999999986
No 166
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.28 E-value=2.2e-06 Score=96.79 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=69.2
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc---cch---------------------hhhHHHhhC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG---DIR---------------------LATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~---~~~---------------------~~~~l~~~~ 206 (423)
.+++++|.|||+||++|+...|.++++++++++. +.|..|.+. ++. ....+.++|
T Consensus 419 kGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~~ 498 (1057)
T PLN02919 419 KGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWREL 498 (1057)
T ss_pred CCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHhc
Confidence 4789999999999999999999999999999765 555555432 100 122345556
Q ss_pred CCCccccccCccEEEEe-CCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 207 PIGQIFFRRGLPSLVAF-PPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 207 ~~~~~~~i~~~Pti~~f-~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+ |.++|+++++ ++|+. ...+.|....+.|.+++.+.
T Consensus 499 ~------V~~iPt~ilid~~G~i----v~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 499 G------VSSWPTFAVVSPNGKL----IAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred C------CCccceEEEECCCCeE----EEEEecccCHHHHHHHHHHH
Confidence 6 9999999999 56654 44677988889999988766
No 167
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=98.27 E-value=3.6e-06 Score=75.38 Aligned_cols=86 Identities=12% Similarity=0.102 Sum_probs=62.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch----------hhhHHHhhCCCCccccc--cCccEEEEeC
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR----------LATHLAERKPIGQIFFR--RGLPSLVAFP 224 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~----------~~~~l~~~~~~~~~~~i--~~~Pti~~f~ 224 (423)
+|.||++||++|++..|..+++++++. +.|..|+.++.. ....+.+.|+ + .++||..++.
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g------~~~~~iPttfLId 144 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFP------NIPVATPTTFLVN 144 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhC------CCCCCCCeEEEEe
Confidence 788999999999999999999999974 566666666331 1123455666 4 5999999995
Q ss_pred CCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 225 PGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 225 ~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+... ....+.|..+.++|.+-+.+.
T Consensus 145 ~~G~i--~~~~~~G~~~~~~L~~~I~~l 170 (181)
T PRK13728 145 VNTLE--ALPLLQGATDAAGFMARMDTV 170 (181)
T ss_pred CCCcE--EEEEEECCCCHHHHHHHHHHH
Confidence 54431 012577999999998877665
No 168
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=98.24 E-value=1.2e-06 Score=68.32 Aligned_cols=64 Identities=17% Similarity=0.224 Sum_probs=49.1
Q ss_pred CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP 224 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~ 224 (423)
+++++++|.|+++||+.|+.|.... .++.+.+...+....||.++..... ++. ..++|+++++.
T Consensus 15 ~~~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~----~~~------~~~~P~~~~ld 81 (82)
T PF13899_consen 15 KEGKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNA----QFD------RQGYPTFFFLD 81 (82)
T ss_dssp HHTSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHH----HHH------HCSSSEEEEEE
T ss_pred HcCCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhH----HhC------CccCCEEEEeC
Confidence 6799999999999999999999877 5566667777889999987443212 111 34799999875
No 169
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=98.22 E-value=8.1e-06 Score=65.69 Aligned_cols=96 Identities=25% Similarity=0.403 Sum_probs=68.1
Q ss_pred cccchhhhhhhhhcCCCceEEEEE-ecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFF-SKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f-~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
+|+++ +++.+.. .+++++++| .+.+ ....|.+..++..+.+.+.|+.+... +...++++|+|.++|++++|
T Consensus 4 lt~~~-f~~~i~~--~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~--~~~~l~~~~~v~~~Pt~~~~ 78 (103)
T PF00085_consen 4 LTDEN-FEKFINE--SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCD--ENKELCKKYGVKSVPTIIFF 78 (103)
T ss_dssp ESTTT-HHHHHTT--TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETT--TSHHHHHHTTCSSSSEEEEE
T ss_pred CCHHH-HHHHHHc--cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhh--ccchhhhccCCCCCCEEEEE
Confidence 45555 4555543 233555554 4322 22456777788888777778777643 24789999999999999999
Q ss_pred cCCCcceeEecCCCChhHHHHHHHhh
Q 014549 338 KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 338 k~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
+++.... .|.|.++.+.|.+||++|
T Consensus 79 ~~g~~~~-~~~g~~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 79 KNGKEVK-RYNGPRNAESLIEFIEKH 103 (103)
T ss_dssp ETTEEEE-EEESSSSHHHHHHHHHHH
T ss_pred ECCcEEE-EEECCCCHHHHHHHHHcC
Confidence 8765444 789999999999999875
No 170
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=98.22 E-value=1.4e-06 Score=89.63 Aligned_cols=99 Identities=17% Similarity=0.212 Sum_probs=74.3
Q ss_pred CcccccCCC--CcEEEEEecCCCccccccHHH-HHHHHHHhhc-cceEEEEEcc-cchhhhHHHhhCCCCccccccCccE
Q 014549 145 DFPSIFHDS--KPWLIQVYSDGSYLCGQFSGA-WKTIAALLEG-IANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPS 219 (423)
Q Consensus 145 nf~~~v~~~--~~~lV~FYapwC~~C~~~~p~-~~~~A~~l~~-~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pt 219 (423)
..++.+..+ +++++.|||+||-.||.+++. +.+.....+- .+..-++|.+ +++...++-++++ +-+.|+
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~------~~G~P~ 537 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLG------VFGVPT 537 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcC------CCCCCE
Confidence 555666444 499999999999999998873 3222222222 2577889988 5566777889999 999999
Q ss_pred EEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 220 LVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 220 i~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+++|.++... +..-.|..+.+.+.+++++.
T Consensus 538 ~~ff~~~g~e---~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 538 YLFFGPQGSE---PEILTGFLTADAFLEHLERA 567 (569)
T ss_pred EEEECCCCCc---CcCCcceecHHHHHHHHHHh
Confidence 9999965543 34478999999999999875
No 171
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.15 E-value=5.9e-06 Score=59.10 Aligned_cols=63 Identities=24% Similarity=0.360 Sum_probs=49.4
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
++.||++||++|+++.+.+.++ ....+.+.+..+++++..........++ +.++|+++++.+|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL-ALLNKGVKFEAVDVDEDPALEKELKRYG------VGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH-HhhCCCcEEEEEEcCCChHHhhHHHhCC------CccccEEEEEeCC
Confidence 4789999999999999999988 5555668999999995543222223566 8899999999876
No 172
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=98.13 E-value=1e-05 Score=65.78 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=59.5
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC-hhH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN-NSR 355 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~-~~~ 355 (423)
++|.|+++.+ ....|.+..++.++.+.+.|+.++... ...++++|+|.++||+++|++++.....|.|..+ .+.
T Consensus 22 v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~i~~~Pt~~~~~~g~~~~~~~~G~~~~~~~ 99 (104)
T cd03004 22 WLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQK--YESLCQQANIRAYPTIRLYPGNASKYHSYNGWHRDADS 99 (104)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCc--hHHHHHHcCCCcccEEEEEcCCCCCceEccCCCCCHHH
Confidence 4555666432 234677788888887777777775322 3789999999999999999987667788899886 888
Q ss_pred HHHHH
Q 014549 356 LSEVM 360 (423)
Q Consensus 356 l~~fi 360 (423)
|.+||
T Consensus 100 l~~~i 104 (104)
T cd03004 100 ILEFI 104 (104)
T ss_pred HHhhC
Confidence 88885
No 173
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.5e-06 Score=91.32 Aligned_cols=53 Identities=19% Similarity=0.343 Sum_probs=46.6
Q ss_pred cccccccccccCC----CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 014549 36 PPSHYDALGIKPY----SSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (423)
Q Consensus 36 ~~d~y~~lg~~~~----a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~ 88 (423)
..+-|+||.++-+ -..+.||++|++||.+|||||||+..++|..+++|||.|+
T Consensus 1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence 4578999999732 2347799999999999999999999999999999999997
No 174
>smart00594 UAS UAS domain.
Probab=98.09 E-value=1.5e-05 Score=67.15 Aligned_cols=92 Identities=12% Similarity=0.141 Sum_probs=66.9
Q ss_pred CCCCcEEEEEecCCCccccccHHH-HH--HHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGA-WK--TIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~-~~--~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~ 227 (423)
+..+..+|.|+++||..|+.|... |. ++.+.++....+-.+|.+... ...++++++ +.++|++.++.+..
T Consensus 25 ~~~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~e-g~~l~~~~~------~~~~P~~~~l~~~~ 97 (122)
T smart00594 25 RQRRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSE-GQRVSQFYK------LDSFPYVAIVDPRT 97 (122)
T ss_pred hhcCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChh-HHHHHHhcC------cCCCCEEEEEecCC
Confidence 667899999999999999998763 42 345566666666667766443 456999999 89999999996543
Q ss_pred CC--CCCcccccCCCCHHHHHHHH
Q 014549 228 KS--SDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 228 ~~--~~~~~~y~G~~~~~~l~~fi 249 (423)
.. ..-.....|..++++|+.++
T Consensus 98 g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 98 GQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred CceeEEEeccccCCCCHHHHHHhh
Confidence 10 00123567999999998875
No 175
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=98.07 E-value=1.3e-05 Score=67.65 Aligned_cols=42 Identities=10% Similarity=-0.062 Sum_probs=36.0
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEc
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc 193 (423)
.+++++|.||+.||+.|++..|.++++.++++.. +.+..|++
T Consensus 22 ~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 22 RGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 4579999999999999999999999999999754 56666665
No 176
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=98.04 E-value=3.6e-05 Score=63.56 Aligned_cols=106 Identities=17% Similarity=0.213 Sum_probs=77.4
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHh-hc--cceEEEEEcc--cchhhhHHHhhCCCCccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL-EG--IANTGMVELG--DIRLATHLAERKPIGQIF 212 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l-~~--~~~~~~Vdc~--~~~~~~~l~~~~~~~~~~ 212 (423)
.+.|++-+|+++|...+.+||.|=...- --.-..+|.++|++. +. .+-+|.|... .++.+.+|+++|++.
T Consensus 6 ~v~LD~~tFdKvi~kf~~~LVKFD~ayP--yGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~--- 80 (126)
T PF07912_consen 6 CVPLDELTFDKVIPKFKYVLVKFDVAYP--YGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKID--- 80 (126)
T ss_dssp SEEESTTHHHHHGGGSSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-S---
T ss_pred eeeccceehhheeccCceEEEEEeccCC--CcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCC---
Confidence 4889999999999999999999975431 113456899999443 32 2577777654 444678899999944
Q ss_pred cccCccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 213 FRRGLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
-..||.+++|..+.. ++..| .|+.++++|..|+.++
T Consensus 81 -ke~fPv~~LF~~~~~---~pv~~p~~~~~t~~~l~~fvk~~ 118 (126)
T PF07912_consen 81 -KEDFPVIYLFVGDKE---EPVRYPFDGDVTADNLQRFVKSN 118 (126)
T ss_dssp -CCC-SEEEEEESSTT---SEEEE-TCS-S-HHHHHHHHHHT
T ss_pred -cccCCEEEEecCCCC---CCccCCccCCccHHHHHHHHHhC
Confidence 367999999996644 37888 7999999999999887
No 177
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=98.02 E-value=4.4e-05 Score=71.58 Aligned_cols=98 Identities=9% Similarity=-0.079 Sum_probs=66.8
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHH-hhCCCCcc----------
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLA-ERKPIGQI---------- 211 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~-~~~~~~~~---------- 211 (423)
.+++++|.||++||+.|....|.+.++.+++++. +.|..|+|+. .......+ +++++.-.
T Consensus 98 kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D~~G~ 177 (236)
T PLN02399 98 KGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVDVNGP 177 (236)
T ss_pred CCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccCCCcc
Confidence 3689999999999999999999999999999865 6888899841 12233343 45443210
Q ss_pred -----c-------------cccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 212 -----F-------------FRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 212 -----~-------------~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+ .|...|+..++-++.+. ...|.|..+.++|.+.|.+.
T Consensus 178 ~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkV---v~~~~G~~~~~~le~~I~~l 233 (236)
T PLN02399 178 STAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKV---VERYPPTTSPFQIEKDIQKL 233 (236)
T ss_pred hhhHHHHHHHHhcCCccCCccccCceEEEECCCCcE---EEEECCCCCHHHHHHHHHHH
Confidence 0 02234776666444432 45677888888887777665
No 178
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.01 E-value=2e-05 Score=59.21 Aligned_cols=71 Identities=8% Similarity=0.035 Sum_probs=51.9
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~ 235 (423)
+..|+++||++|+++.+.+++. .+.+..+|.+++.. ..++++.++ +.++|++.+. |. .
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~~------~i~~~~vdi~~~~~~~~~~~~~~~------~~~vP~~~~~--~~-------~ 60 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTSK------GIAFEEIDVEKDSAAREEVLKVLG------QRGVPVIVIG--HK-------I 60 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHHC------CCeEEEEeccCCHHHHHHHHHHhC------CCcccEEEEC--CE-------E
Confidence 4679999999999998887652 36788889885433 244677788 8899999885 32 3
Q ss_pred ccCCCCHHHHHHHH
Q 014549 236 FEGELSVDAVTDWF 249 (423)
Q Consensus 236 y~G~~~~~~l~~fi 249 (423)
..| .+.+.|.+|+
T Consensus 61 ~~g-~~~~~i~~~i 73 (74)
T TIGR02196 61 IVG-FDPEKLDQLL 73 (74)
T ss_pred Eee-CCHHHHHHHh
Confidence 455 3677887775
No 179
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=98.00 E-value=3.5e-05 Score=61.73 Aligned_cols=93 Identities=22% Similarity=0.292 Sum_probs=66.4
Q ss_pred ccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc
Q 014549 263 TKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 263 t~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~ 342 (423)
++.+.++.++... ..++|.+|.+..+.....+..+|..+++.+.|+.+. +..+.+++++. .|++++|++.+.
T Consensus 5 ~s~~~l~~~~~~~--~~~vvg~f~~~~~~~~~~f~~~A~~~r~~~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~~~ 76 (97)
T cd02981 5 TSKEELEKFLDKD--DVVVVGFFKDEESEEYKTFEKVAESLRDDYGFGHTS-----DKEVAKKLKVK-PGSVVLFKPFEE 76 (97)
T ss_pred CCHHHHHHHhccC--CeEEEEEECCCCcHHHHHHHHHHHhcccCCeEEEEC-----hHHHHHHcCCC-CCceEEeCCccc
Confidence 3333345566432 335666776543334566777888888888888874 34577778875 589999998877
Q ss_pred ceeEecCCCChhHHHHHHHhh
Q 014549 343 KPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 343 ~~~~y~g~~~~~~l~~fi~~~ 363 (423)
.++.|.|.++.+.|.+||..|
T Consensus 77 ~~~~y~g~~~~~~l~~fi~~~ 97 (97)
T cd02981 77 EPVEYDGEFTEESLVEFIKDN 97 (97)
T ss_pred CCccCCCCCCHHHHHHHHHhC
Confidence 888899999889999999864
No 180
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=97.98 E-value=2.9e-05 Score=62.81 Aligned_cols=77 Identities=18% Similarity=0.243 Sum_probs=57.5
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+++.+ ....|.+..+|..+.+.+.|+.++..+ .+.++++|+|.++||+++|+++. ....|.|..+.+.|
T Consensus 21 ~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~~~~l 97 (101)
T cd03003 21 WFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGD--DRMLCRSQGVNSYPSLYVFPSGM-NPEKYYGDRSKESL 97 (101)
T ss_pred EEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCc--cHHHHHHcCCCccCEEEEEcCCC-CcccCCCCCCHHHH
Confidence 5555666532 234677888898887777777775332 37899999999999999998654 45678999999888
Q ss_pred HHH
Q 014549 357 SEV 359 (423)
Q Consensus 357 ~~f 359 (423)
.+|
T Consensus 98 ~~f 100 (101)
T cd03003 98 VKF 100 (101)
T ss_pred Hhh
Confidence 877
No 181
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.98 E-value=3.6e-05 Score=62.93 Aligned_cols=97 Identities=12% Similarity=0.157 Sum_probs=67.6
Q ss_pred cccchhhhhhhhhcCCCc-eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
+++.+ +++.+.+ .++ ++|.|+++. +....+.+..++..+.+.+.++.++....+...++++|+|.++|++++|
T Consensus 5 l~~~~-~~~~i~~--~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~ 81 (109)
T cd03002 5 LTPKN-FDKVVHN--TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVF 81 (109)
T ss_pred cchhh-HHHHHhc--CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEE
Confidence 34444 3444433 234 455555542 2335677888888887777777776544334779999999999999999
Q ss_pred cCCC----cceeEecCCCChhHHHHHHH
Q 014549 338 KDPG----VKPVVYYGSFNNSRLSEVME 361 (423)
Q Consensus 338 k~~~----~~~~~y~g~~~~~~l~~fi~ 361 (423)
+++. ..+..|.|..+.+.|.+||.
T Consensus 82 ~~~~~~~~~~~~~~~G~~~~~~l~~fi~ 109 (109)
T cd03002 82 RPPKKASKHAVEDYNGERSAKAIVDFVL 109 (109)
T ss_pred eCCCcccccccccccCccCHHHHHHHhC
Confidence 8876 35677899999999999983
No 182
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=97.97 E-value=2.2e-05 Score=60.29 Aligned_cols=73 Identities=22% Similarity=0.332 Sum_probs=54.9
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE 237 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~ 237 (423)
|++++++|++|..+...+++++..+. +.+-.++.. ...++ .+|| |.++|++++ +|+. .|.
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~~--i~~ei~~~~---~~~~~-~~yg------v~~vPalvI--ng~~------~~~ 62 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEELG--IEVEIIDIE---DFEEI-EKYG------VMSVPALVI--NGKV------VFV 62 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHTT--EEEEEEETT---THHHH-HHTT-------SSSSEEEE--TTEE------EEE
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhcC--CeEEEEEcc---CHHHH-HHcC------CCCCCEEEE--CCEE------EEE
Confidence 45689999999999999999999984 566555654 34456 8999 999999954 6654 788
Q ss_pred C-CCCHHHHHHHHH
Q 014549 238 G-ELSVDAVTDWFA 250 (423)
Q Consensus 238 G-~~~~~~l~~fi~ 250 (423)
| ..+.+.|.+|++
T Consensus 63 G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 63 GRVPSKEELKELLE 76 (76)
T ss_dssp SS--HHHHHHHHHH
T ss_pred ecCCCHHHHHHHhC
Confidence 9 778888888873
No 183
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=97.95 E-value=5.4e-05 Score=68.84 Aligned_cols=92 Identities=17% Similarity=0.215 Sum_probs=55.9
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCC-----------ccccccCccEE
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIG-----------QIFFRRGLPSL 220 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~-----------~~~~i~~~Pti 220 (423)
.+++++|.||++||+.|+...|...++.+... +.+..|+.+......+..++++++ ..|++.+.|+.
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~~--~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~ 150 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAEE--TDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYG 150 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhcC--CcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceE
Confidence 56789999999999999999999999876542 334444433222222333333321 23448899987
Q ss_pred EEeCCCCCCCCCcccccCC-CCHHHHHHHHH
Q 014549 221 VAFPPGCKSSDCMTRFEGE-LSVDAVTDWFA 250 (423)
Q Consensus 221 ~~f~~g~~~~~~~~~y~G~-~~~~~l~~fi~ 250 (423)
+++-+++. ..+.|. .+.+.+.+.+.
T Consensus 151 ~lID~~G~-----I~~~g~~~~~~~le~ll~ 176 (189)
T TIGR02661 151 VLLDQDGK-----IRAKGLTNTREHLESLLE 176 (189)
T ss_pred EEECCCCe-----EEEccCCCCHHHHHHHHH
Confidence 77654333 245553 24455555554
No 184
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.94 E-value=0.00025 Score=75.25 Aligned_cols=184 Identities=15% Similarity=0.078 Sum_probs=114.6
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeC-CCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFP-PGCKSSD 231 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~-~g~~~~~ 231 (423)
+.+.|+.|+.+.|..|..+....++++ .+.+.+++-..|.. ....++++|+ |...|++.++. +|...
T Consensus 366 ~~v~l~~~~~~~~~~~~e~~~~l~e~~-~~s~~i~~~~~~~~---~~~~~~~~~~------v~~~P~~~i~~~~~~~~-- 433 (555)
T TIGR03143 366 NPVTLLLFLDGSNEKSAELQSFLGEFA-SLSEKLNSEAVNRG---EEPESETLPK------ITKLPTVALLDDDGNYT-- 433 (555)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHH-hcCCcEEEEEeccc---cchhhHhhcC------CCcCCEEEEEeCCCccc--
Confidence 445678888999999999998888888 56677888778877 3455889999 88999999995 44332
Q ss_pred CcccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEe-cCCCCCc--hHHHHHHHhccccc
Q 014549 232 CMTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFS-KTGERAS--PFVRQISRNYWAYA 307 (423)
Q Consensus 232 ~~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~-~~~~~~~--~~~~~~a~~~~~~~ 307 (423)
...|.|-..-..+-.|+...+. ..+... + +++ ..+.+..-+...-+-+|.+ .|..|+. ..+..++... ..+
T Consensus 434 -~i~f~g~P~G~Ef~s~i~~i~~~~~~~~~-l-~~~-~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~-~~i 508 (555)
T TIGR03143 434 -GLKFHGVPSGHELNSFILALYNAAGPGQP-L-GEE-LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLN-PNV 508 (555)
T ss_pred -ceEEEecCccHhHHHHHHHHHHhcCCCCC-C-CHH-HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhC-CCc
Confidence 4689887777777777765421 111111 2 222 1223333211111223344 3445543 2234455442 234
Q ss_pred eEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549 308 SFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (423)
Q Consensus 308 ~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi 360 (423)
..-.+... +-++++++|+|.+.|++++ ++. +.+.|..+.++|.+||
T Consensus 509 ~~~~i~~~--~~~~~~~~~~v~~vP~~~i---~~~--~~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 509 EAEMIDVS--HFPDLKDEYGIMSVPAIVV---DDQ--QVYFGKKTIEEMLELI 554 (555)
T ss_pred eEEEEECc--ccHHHHHhCCceecCEEEE---CCE--EEEeeCCCHHHHHHhh
Confidence 43333221 2378999999999999988 332 3467888888888776
No 185
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.93 E-value=3.9e-05 Score=63.73 Aligned_cols=78 Identities=12% Similarity=0.116 Sum_probs=58.0
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHH-hhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWW-NTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~-~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
++|.|+++. ++...|.+..+|..+.+.+.|+.|+.. ....++ ++|+|.++|||++|+++. .+..|.|.++.+.
T Consensus 32 vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d--~~~~l~~~~~~I~~~PTl~lf~~g~-~~~~y~G~~~~~~ 108 (113)
T cd03006 32 SLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW--WPQGKCRKQKHFFYFPVIHLYYRSR-GPIEYKGPMRAPY 108 (113)
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC--CChHHHHHhcCCcccCEEEEEECCc-cceEEeCCCCHHH
Confidence 455566653 233567888899888777777777532 135677 589999999999998654 5788999999999
Q ss_pred HHHHH
Q 014549 356 LSEVM 360 (423)
Q Consensus 356 l~~fi 360 (423)
|..|+
T Consensus 109 i~~~~ 113 (113)
T cd03006 109 MEKFV 113 (113)
T ss_pred HHhhC
Confidence 88773
No 186
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.93 E-value=4.4e-05 Score=62.58 Aligned_cols=93 Identities=12% Similarity=0.180 Sum_probs=60.7
Q ss_pred cccchhhhhhhhhcCCCceEE-EEEecC---CCCCchHHHHHHHhccc------cceEEEEEccccccHHHHhhcCCCCC
Q 014549 262 YTKESMGKNFLAKTGPHKVKV-IFFSKT---GERASPFVRQISRNYWA------YASFAFVLWREEESSIWWNTFEVESA 331 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~v-l~f~~~---~~~~~~~~~~~a~~~~~------~~~f~~v~~~~~~~~~l~~~f~v~~~ 331 (423)
+++++ +++.+... ++++ .|+++. +....|.+..++..+++ .+.++.+... ...+++++|+|.++
T Consensus 6 l~~~~-f~~~i~~~---~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d--~~~~l~~~~~v~~~ 79 (108)
T cd02996 6 LTSGN-IDDILQSA---ELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCD--KESDIADRYRINKY 79 (108)
T ss_pred cCHhh-HHHHHhcC---CEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECC--CCHHHHHhCCCCcC
Confidence 45444 34445332 3444 455542 23345677777765532 2455555422 23789999999999
Q ss_pred CeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549 332 PAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (423)
Q Consensus 332 Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi 360 (423)
|++++|+++......|.|..+.+.|.+||
T Consensus 80 Ptl~~~~~g~~~~~~~~g~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRGQRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCCCCCHHHHHhhC
Confidence 99999998765567789999999999885
No 187
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=1e-05 Score=73.15 Aligned_cols=54 Identities=19% Similarity=0.417 Sum_probs=48.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC--ChHHHHHHHHHHHH-HcCC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI--PSTADFLKIQYAYE-LLTD 89 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~--~~~~~f~~i~~Ay~-~L~~ 89 (423)
-..+|.+|||..+++..++|.||.+|++++|||... .+.++|.+|.+||. +|+.
T Consensus 46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 457999999999999999999999999999999754 46788999999999 7763
No 188
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.91 E-value=4.7e-05 Score=60.95 Aligned_cols=87 Identities=13% Similarity=0.233 Sum_probs=69.0
Q ss_pred cccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC
Q 014549 146 FPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (423)
Q Consensus 146 f~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~ 225 (423)
.+..+...++++|-|+.++|+ .....|.++|+.+...+.||.+.-. +++++++ +. -|++.+|++
T Consensus 10 l~~~~~~~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~~~------~~~~~~~------~~-~~~i~l~~~ 73 (97)
T cd02981 10 LEKFLDKDDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTSDK------EVAKKLK------VK-PGSVVLFKP 73 (97)
T ss_pred HHHHhccCCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEChH------HHHHHcC------CC-CCceEEeCC
Confidence 445678899999999999887 5678999999999888889887733 2666665 54 499999987
Q ss_pred CCCCCCCcccccCCCCHHHHHHHHHH
Q 014549 226 GCKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 226 g~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
.... ...|.|..+.++|.+|+..
T Consensus 74 ~~~~---~~~y~g~~~~~~l~~fi~~ 96 (97)
T cd02981 74 FEEE---PVEYDGEFTEESLVEFIKD 96 (97)
T ss_pred cccC---CccCCCCCCHHHHHHHHHh
Confidence 6332 5679999999999999864
No 189
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=97.89 E-value=2.4e-05 Score=66.25 Aligned_cols=68 Identities=13% Similarity=0.113 Sum_probs=43.2
Q ss_pred CCCCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGC 227 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~ 227 (423)
.++++++|.||++||++|+.|.... .++++.++.......++.+.. ...+. . . ..++||++++.++.
T Consensus 21 ~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~t--d~~~~-~-~------g~~vPtivFld~~g 90 (130)
T cd02960 21 KSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETT--DKNLS-P-D------GQYVPRIMFVDPSL 90 (130)
T ss_pred HCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccC--CCCcC-c-c------CcccCeEEEECCCC
Confidence 6799999999999999999999853 244555544333334444311 01111 1 1 35899999996654
Q ss_pred C
Q 014549 228 K 228 (423)
Q Consensus 228 ~ 228 (423)
.
T Consensus 91 ~ 91 (130)
T cd02960 91 T 91 (130)
T ss_pred C
Confidence 3
No 190
>PTZ00056 glutathione peroxidase; Provisional
Probab=97.84 E-value=0.00012 Score=67.06 Aligned_cols=58 Identities=7% Similarity=0.084 Sum_probs=46.1
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc--------chhhhHHHhhCCCC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD--------IRLATHLAERKPIG 209 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~--------~~~~~~l~~~~~~~ 209 (423)
.+++++|.|||+||+.|++-.|...++.+++++. +.|..|+|++ .......++++++.
T Consensus 38 kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~ 104 (199)
T PTZ00056 38 KNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIK 104 (199)
T ss_pred CCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCC
Confidence 3679999999999999999999999999999865 6888898841 22345567777643
No 191
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=97.83 E-value=0.00013 Score=59.30 Aligned_cols=95 Identities=13% Similarity=0.186 Sum_probs=68.3
Q ss_pred cccchhhhhhhh-hcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC
Q 014549 262 YTKESMGKNFLA-KTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (423)
Q Consensus 262 it~~~~~~~fl~-~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~ 340 (423)
+++.+.++.|+. .. ..++|.+|.+..+.....+..+|..++..+.|+... ...+.+.+++. .|+++++++.
T Consensus 5 i~~~~~~e~~~~~~~--~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~~-~~~i~l~~~~ 76 (102)
T cd03066 5 INSERELQAFENIED--DIKLIGYFKSEDSEHYKAFEEAAEEFHPYIKFFATF-----DSKVAKKLGLK-MNEVDFYEPF 76 (102)
T ss_pred cCCHHHHHHHhcccC--CeEEEEEECCCCCHHHHHHHHHHHhhhcCCEEEEEC-----cHHHHHHcCCC-CCcEEEeCCC
Confidence 444444678885 43 235666776543333456777888888888887764 34577888875 6999999886
Q ss_pred CcceeEe-cCCCChhHHHHHHHhhc
Q 014549 341 GVKPVVY-YGSFNNSRLSEVMEQNK 364 (423)
Q Consensus 341 ~~~~~~y-~g~~~~~~l~~fi~~~~ 364 (423)
+..++.| .|..+.+.|.+||..++
T Consensus 77 ~e~~~~y~~g~~~~~~l~~fi~~~~ 101 (102)
T cd03066 77 MEEPVTIPDKPYSEEELVDFVEEHK 101 (102)
T ss_pred CCCCcccCCCCCCHHHHHHHHHHhc
Confidence 6777789 88889999999999864
No 192
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=97.82 E-value=7.7e-05 Score=64.47 Aligned_cols=77 Identities=12% Similarity=0.115 Sum_probs=57.0
Q ss_pred CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCC------------cccccc--
Q 014549 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIG------------QIFFRR-- 215 (423)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~------------~~~~i~-- 215 (423)
.+++++|.||+. ||+.|+.-.|...++++.++.. +.+..|+.+.+....+.+++++.. ..+.+.
T Consensus 27 ~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 106 (146)
T PF08534_consen 27 KGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGVTIM 106 (146)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTCEEE
T ss_pred CCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCCccc
Confidence 578899999999 9999999999999998887665 677777766544445555555432 345577
Q ss_pred -------CccEEEEeCCCCC
Q 014549 216 -------GLPSLVAFPPGCK 228 (423)
Q Consensus 216 -------~~Pti~~f~~g~~ 228 (423)
++|+++++-.+..
T Consensus 107 ~~~~~~~~~P~~~lId~~G~ 126 (146)
T PF08534_consen 107 EDPGNGFGIPTTFLIDKDGK 126 (146)
T ss_dssp CCTTTTSSSSEEEEEETTSB
T ss_pred cccccCCeecEEEEEECCCE
Confidence 8998877655444
No 193
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=97.81 E-value=0.00012 Score=59.79 Aligned_cols=93 Identities=14% Similarity=0.217 Sum_probs=65.6
Q ss_pred cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe----
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf---- 337 (423)
+++.+.++.|+.. ...++|.||.+..+.....+..+|..+++.+.|+... ...+.+++++ .|++++|
T Consensus 5 i~s~~~l~~f~~~--~~~~Vvg~f~~~~~~~~~~F~~vA~~~R~d~~F~~~~-----~~~~~~~~~~--~~~ivl~~p~~ 75 (104)
T cd03069 5 LRTEAEFEKFLSD--DDASVVGFFEDEDSKLLSEFLKAADTLRESFRFAHTS-----DKQLLEKYGY--GEGVVLFRPPR 75 (104)
T ss_pred cCCHHHHHHHhcc--CCcEEEEEEcCCCchHHHHHHHHHHhhhhcCEEEEEC-----hHHHHHhcCC--CCceEEEechh
Confidence 3333335677753 3346666776544334566777888888888888764 3457888888 5889999
Q ss_pred --cCCCcceeEecCCCChhHHHHHHHhh
Q 014549 338 --KDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 338 --k~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
+..+...+.|.|+++.+.|.+||..+
T Consensus 76 ~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 76 LSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred hhcccCcccccccCcCCHHHHHHHHHhh
Confidence 44456667799999989999999875
No 194
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.80 E-value=6.5e-05 Score=60.58 Aligned_cols=69 Identities=20% Similarity=0.290 Sum_probs=54.9
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc-cchhhhHHHhhCCCCccccccCccEEEEeCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK 228 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~ 228 (423)
..+.++.||++||++|+.+.|...++++.+...+.+..+|.. .++ .+...++.. +..+|++.++.++..
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~----~~~~p~~~~~~~~~~ 101 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENP---DLAAEFGVA----VRSIPTLLLFKDGKE 101 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCCh---HHHHHHhhh----hccCCeEEEEeCcch
Confidence 778999999999999999999999999999887788888885 333 355555411 568899998888754
No 195
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.80 E-value=0.00011 Score=59.31 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=59.0
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+++.+ ....+.+..++..+.+.+.++.+... +...++++|+|.++|++++|+++...+..|.|..+.+.|
T Consensus 21 vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~--~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l 98 (103)
T cd03001 21 WLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDAD--VHQSLAQQYGVRGFPTIKVFGAGKNSPQDYQGGRTAKAI 98 (103)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECc--chHHHHHHCCCCccCEEEEECCCCcceeecCCCCCHHHH
Confidence 4455555422 23456777788887777777777532 236799999999999999998776677889999999999
Q ss_pred HHHH
Q 014549 357 SEVM 360 (423)
Q Consensus 357 ~~fi 360 (423)
.+|+
T Consensus 99 ~~~~ 102 (103)
T cd03001 99 VSAA 102 (103)
T ss_pred HHHh
Confidence 9987
No 196
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.77 E-value=0.00023 Score=57.04 Aligned_cols=81 Identities=20% Similarity=0.223 Sum_probs=57.9
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccc--cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWA--YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~--~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~ 354 (423)
+++.|+++.+ ....+.+..++..+.. .+.++.+.. .....++++|+|.+.|++++|++++. +..|.|..+.+
T Consensus 16 ~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~--~~~~~~~~~~~i~~~P~~~~~~~~~~-~~~~~g~~~~~ 92 (102)
T TIGR01126 16 VLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDA--TAEKDLASRFGVSGFPTIKFFPKGKK-PVDYEGGRDLE 92 (102)
T ss_pred EEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEc--cchHHHHHhCCCCcCCEEEEecCCCc-ceeecCCCCHH
Confidence 4555555432 2234666667777765 355555532 12378999999999999999998766 77889999999
Q ss_pred HHHHHHHhh
Q 014549 355 RLSEVMEQN 363 (423)
Q Consensus 355 ~l~~fi~~~ 363 (423)
.|..||+++
T Consensus 93 ~l~~~i~~~ 101 (102)
T TIGR01126 93 AIVEFVNEK 101 (102)
T ss_pred HHHHHHHhc
Confidence 999999874
No 197
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=97.75 E-value=0.00013 Score=63.72 Aligned_cols=41 Identities=7% Similarity=-0.162 Sum_probs=36.1
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~ 194 (423)
+++++|.||+.||+ |..-.|.++++.+++++. +.|..|+++
T Consensus 22 Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 22 GKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred CCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 68999999999999 999999999999999754 678788774
No 198
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=97.75 E-value=0.00038 Score=59.10 Aligned_cols=96 Identities=16% Similarity=0.146 Sum_probs=69.0
Q ss_pred hhhhhhhcCCCceEEEEEecCCCC------CchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCC
Q 014549 268 GKNFLAKTGPHKVKVIFFSKTGER------ASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP 340 (423)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~~~------~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~ 340 (423)
++.|+.... ..|+|+..+..+ ....+..++.+|.+ .+.++.|.... .+.++.+|||.+.||+++|+++
T Consensus 27 ~~~~~~~~~---~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~--~~~LA~~fgV~siPTLl~FkdG 101 (132)
T PRK11509 27 LDDWLTQAP---DGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQ--SEAIGDRFGVFRFPATLVFTGG 101 (132)
T ss_pred HHHHHhCCC---cEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCC--CHHHHHHcCCccCCEEEEEECC
Confidence 677886544 677787654322 13456778888863 47788886443 4789999999999999999976
Q ss_pred CcceeEecCCCChhHHHHHHHhhccccCc
Q 014549 341 GVKPVVYYGSFNNSRLSEVMEQNKLQELP 369 (423)
Q Consensus 341 ~~~~~~y~g~~~~~~l~~fi~~~~~~~lp 369 (423)
... -...|..+.+.+.+||++..-...|
T Consensus 102 k~v-~~i~G~~~k~~l~~~I~~~L~~~~~ 129 (132)
T PRK11509 102 NYR-GVLNGIHPWAELINLMRGLVEPQQE 129 (132)
T ss_pred EEE-EEEeCcCCHHHHHHHHHHHhcCcCc
Confidence 533 3457888999999999986544333
No 199
>PLN02412 probable glutathione peroxidase
Probab=97.73 E-value=0.00025 Score=63.16 Aligned_cols=42 Identities=10% Similarity=-0.099 Sum_probs=38.1
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~ 194 (423)
+++++|.||++||+.|+.-.|.+.++.+++++. +.|..|+|+
T Consensus 29 gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~ 71 (167)
T PLN02412 29 GKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCN 71 (167)
T ss_pred CCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEeccc
Confidence 589999999999999999999999999999876 788889885
No 200
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=97.72 E-value=0.00017 Score=59.25 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=56.1
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhcccc-ceEEEEEccccccHHHHh-hcCCCCCCeEEEecCCCcceeEecCC-CCh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIVFLKDPGVKPVVYYGS-FNN 353 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~-~f~v~~~Ptl~lfk~~~~~~~~y~g~-~~~ 353 (423)
++|.|+++.+ ....+.+..++..+.+. +.++.+.... +...++. .|++.++||+++|+++...+..|.|+ ++.
T Consensus 24 vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~-~~~~~~~~~~~v~~~Pti~~f~~~~~~~~~y~g~~~~~ 102 (109)
T cd02993 24 TLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG-EQREFAKEELQLKSFPTILFFPKNSRQPIKYPSEQRDV 102 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc-cchhhHHhhcCCCcCCEEEEEcCCCCCceeccCCCCCH
Confidence 5555665432 33456777788887653 5666665322 1245665 59999999999999887788889985 798
Q ss_pred hHHHHHH
Q 014549 354 SRLSEVM 360 (423)
Q Consensus 354 ~~l~~fi 360 (423)
++|..||
T Consensus 103 ~~l~~f~ 109 (109)
T cd02993 103 DSLLMFV 109 (109)
T ss_pred HHHHhhC
Confidence 9998885
No 201
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=97.66 E-value=0.00014 Score=55.35 Aligned_cols=72 Identities=14% Similarity=0.121 Sum_probs=45.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhh--CCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAER--KPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~--~~~~~~~~i~~~Pti~~f~~g~~~~~~~~ 234 (423)
++.|+++||++|+++.+.+++.. +.+-.+|.+++........+ ++ +.++|++ ++.+|..
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~~------~~~~~idi~~~~~~~~~~~~~~~~------~~~vP~i-~~~~g~~------ 62 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKLG------AAYEWVDIEEDEGAADRVVSVNNG------NMTVPTV-KFADGSF------ 62 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHcC------CceEEEeCcCCHhHHHHHHHHhCC------CceeCEE-EECCCeE------
Confidence 57899999999999999886653 34556887754432222222 25 7899997 4666643
Q ss_pred cccCCCCHHHHHHHH
Q 014549 235 RFEGELSVDAVTDWF 249 (423)
Q Consensus 235 ~y~G~~~~~~l~~fi 249 (423)
. ...+..++.+.+
T Consensus 63 l--~~~~~~~~~~~l 75 (77)
T TIGR02200 63 L--TNPSAAQVKAKL 75 (77)
T ss_pred e--cCCCHHHHHHHh
Confidence 1 234455665544
No 202
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=97.66 E-value=0.00044 Score=60.47 Aligned_cols=41 Identities=15% Similarity=-0.062 Sum_probs=37.1
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVEL 193 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc 193 (423)
+++++|.|+++||+.|++-.|.+.++.++++.. +.|..|+|
T Consensus 22 Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 22 GKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred CCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 578999999999999999999999999999864 68888987
No 203
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=97.66 E-value=0.00016 Score=58.54 Aligned_cols=77 Identities=14% Similarity=0.207 Sum_probs=56.2
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+++. +....|.+..++..+.+ +.++.+...+ +...++++|+|.++||+++|+++ ....|.|..+.+.|
T Consensus 21 vlV~F~a~WC~~C~~~~p~l~~la~~~~~-~~~~~vd~~~-~~~~l~~~~~V~~~PT~~lf~~g--~~~~~~G~~~~~~l 96 (100)
T cd02999 21 TAVLFYASWCPFSASFRPHFNALSSMFPQ-IRHLAIEESS-IKPSLLSRYGVVGFPTILLFNST--PRVRYNGTRTLDSL 96 (100)
T ss_pred EEEEEECCCCHHHHhHhHHHHHHHHHhcc-CceEEEECCC-CCHHHHHhcCCeecCEEEEEcCC--ceeEecCCCCHHHH
Confidence 455566543 23457888888888754 5555553221 24789999999999999999876 56788999999999
Q ss_pred HHHH
Q 014549 357 SEVM 360 (423)
Q Consensus 357 ~~fi 360 (423)
.+||
T Consensus 97 ~~f~ 100 (100)
T cd02999 97 AAFY 100 (100)
T ss_pred HhhC
Confidence 9885
No 204
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=97.66 E-value=0.00024 Score=67.04 Aligned_cols=109 Identities=13% Similarity=0.153 Sum_probs=81.6
Q ss_pred hhhhhhhhhcCCCceEEEEEec---CCCCCchHHHHHHHhccccceEEEEEcccccc-HHHHhhcCCCCCCeEEEecCCC
Q 014549 266 SMGKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 266 ~~~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
++.+.|....++..|+|-|+.+ +++.+.|.+......++..-.-..|..-+|+. +.++.+|+|.++|||.+||+
T Consensus 32 DLddkFkdnkdddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kg-- 109 (468)
T KOG4277|consen 32 DLDDKFKDNKDDDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKG-- 109 (468)
T ss_pred hhhHHhhhcccCCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecC--
Confidence 3346777666678899999885 56778999877665554433334555567766 88999999999999999985
Q ss_pred cceeEecCCCChhHHHHHHHhhccccCcccccccc
Q 014549 342 VKPVVYYGSFNNSRLSEVMEQNKLQELPQLRSVTS 376 (423)
Q Consensus 342 ~~~~~y~g~~~~~~l~~fi~~~~~~~lp~l~~~~~ 376 (423)
.....|.|.++.++|.+|...-.-+.+-.+.....
T Consensus 110 d~a~dYRG~R~Kd~iieFAhR~a~aiI~pi~enQ~ 144 (468)
T KOG4277|consen 110 DHAIDYRGGREKDAIIEFAHRCAAAIIEPINENQI 144 (468)
T ss_pred CeeeecCCCccHHHHHHHHHhcccceeeecChhHH
Confidence 35567899999999999998866666666665333
No 205
>PF13728 TraF: F plasmid transfer operon protein
Probab=97.63 E-value=0.00021 Score=66.22 Aligned_cols=86 Identities=22% Similarity=0.192 Sum_probs=64.6
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHhhCCCCccccccCccEEEEe
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------~~~~~l~~~~~~~~~~~i~~~Pti~~f 223 (423)
.++.-|+.||.+.|+.|+.++|+...+++.+. +.+-.|+.|.. .....++++++ |..+|+++++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~~yg--~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~------v~~~Pal~Lv 190 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFADKYG--FSVIPVSLDGRPIPSFPNPRPDPGQAKRLG------VKVTPALFLV 190 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHHHhC--CEEEEEecCCCCCcCCCCCCCCHHHHHHcC------CCcCCEEEEE
Confidence 47788999999999999999999999999884 45555555421 12355888888 9999999999
Q ss_pred CCCCCCCCCcccccCCCCHHHHHH
Q 014549 224 PPGCKSSDCMTRFEGELSVDAVTD 247 (423)
Q Consensus 224 ~~g~~~~~~~~~y~G~~~~~~l~~ 247 (423)
.++... -...-.|..+.++|.+
T Consensus 191 ~~~~~~--~~pv~~G~~s~~~L~~ 212 (215)
T PF13728_consen 191 NPNTKK--WYPVSQGFMSLDELED 212 (215)
T ss_pred ECCCCe--EEEEeeecCCHHHHHH
Confidence 887631 0112248888888875
No 206
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.62 E-value=0.00024 Score=72.89 Aligned_cols=100 Identities=11% Similarity=0.145 Sum_probs=68.2
Q ss_pred cccchhhhhhhhhcCCCc-eEEEEEecC---CCCCchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549 262 YTKESMGKNFLAKTGPHK-VKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~-~~vl~f~~~---~~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l 336 (423)
+++.+ +++.+.....++ ++|.|+.+. ++...|.+..+|.+|.+. +.|+.++.........+++|+|.++||+++
T Consensus 356 L~~~n-f~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTii~ 434 (463)
T TIGR00424 356 LSRPG-IENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTILF 434 (463)
T ss_pred CCHHH-HHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceEEE
Confidence 56555 455553112233 555566653 233467788888888654 667777543222233457899999999999
Q ss_pred ecCCCcceeEec-CCCChhHHHHHHHh
Q 014549 337 LKDPGVKPVVYY-GSFNNSRLSEVMEQ 362 (423)
Q Consensus 337 fk~~~~~~~~y~-g~~~~~~l~~fi~~ 362 (423)
|+++...++.|. |.++.+.|..||+.
T Consensus 435 Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 435 FPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 999877888897 58999999999985
No 207
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00025 Score=60.92 Aligned_cols=81 Identities=16% Similarity=0.267 Sum_probs=63.5
Q ss_pred eEEEEEec-CC--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSK-TG--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~-~~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+++ ++ +.+.|.+..++.+|.+.++|+.+++.+ ..+++.+|+|+..||+++|++|... ..+.|..+.+.|
T Consensus 64 VlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~--~~ela~~Y~I~avPtvlvfknGe~~-d~~vG~~~~~~l 140 (150)
T KOG0910|consen 64 VLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDE--HPELAEDYEISAVPTVLVFKNGEKV-DRFVGAVPKEQL 140 (150)
T ss_pred EEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEcccc--ccchHhhcceeeeeEEEEEECCEEe-eeecccCCHHHH
Confidence 56667665 22 346788999999999999999887443 3689999999999999999976544 355788888889
Q ss_pred HHHHHhh
Q 014549 357 SEVMEQN 363 (423)
Q Consensus 357 ~~fi~~~ 363 (423)
.+||++.
T Consensus 141 ~~~i~k~ 147 (150)
T KOG0910|consen 141 RSLIKKF 147 (150)
T ss_pred HHHHHHH
Confidence 9998873
No 208
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.56 E-value=0.0003 Score=56.51 Aligned_cols=77 Identities=23% Similarity=0.284 Sum_probs=55.4
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~ 352 (423)
++|.|+++.+ ....|.+..++.++.+ .+.++.+. ++ ...++++|+|.++|++++|+++. ....|.|..+
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd---~~~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~~~ 94 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVD---CTQHRELCSEFQVRGYPTLLLFKDGE-KVDKYKGTRD 94 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEE---CCCChhhHhhcCCCcCCEEEEEeCCC-eeeEeeCCCC
Confidence 5666666532 2346777778888765 45555553 43 36799999999999999997654 5567899999
Q ss_pred hhHHHHHH
Q 014549 353 NSRLSEVM 360 (423)
Q Consensus 353 ~~~l~~fi 360 (423)
.+.|.+||
T Consensus 95 ~~~l~~~i 102 (102)
T cd03005 95 LDSLKEFV 102 (102)
T ss_pred HHHHHhhC
Confidence 88888875
No 209
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=97.55 E-value=0.00056 Score=60.93 Aligned_cols=96 Identities=11% Similarity=0.117 Sum_probs=64.4
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhc-cceEEEEEcccc--------hhhhHHHhhCCCC------------c
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDI--------RLATHLAERKPIG------------Q 210 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~--------~~~~~l~~~~~~~------------~ 210 (423)
.+++++|.||++||+.|.+..|...++.+++.+ .+.|..|.++.. .......+++++. .
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 568899999999999999999999999999974 478888877531 1112222232221 2
Q ss_pred cccccCccEEEEeCCCCCCCCCcccccC-----------CCCHHHHHHHHHHh
Q 014549 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEG-----------ELSVDAVTDWFATA 252 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G-----------~~~~~~l~~fi~~~ 252 (423)
.+++...|+++++-++... .|.| ..+.+.+.+-|...
T Consensus 104 ~~~v~~~P~~~lid~~G~v-----~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 151 (171)
T cd02969 104 AYGAACTPDFFLFDPDGKL-----VYRGRIDDSRPGNDPPVTGRDLRAALDAL 151 (171)
T ss_pred HcCCCcCCcEEEECCCCeE-----EEeecccCCcccccccccHHHHHHHHHHH
Confidence 3348899999999654432 3332 23556677777655
No 210
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=97.52 E-value=0.0005 Score=56.75 Aligned_cols=80 Identities=14% Similarity=0.065 Sum_probs=55.9
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
++|.|+++. +....|.+..++..+.+ .+.++.|... ..+.++++|+|.++||+++|+++ .....+.|..+.+.
T Consensus 27 vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d--~~~~l~~~~~V~~~Pt~~i~~~g-~~~~~~~G~~~~~~ 103 (111)
T cd02963 27 YLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAG--HERRLARKLGAHSVPAIVGIING-QVTFYHDSSFTKQH 103 (111)
T ss_pred EEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEecc--ccHHHHHHcCCccCCEEEEEECC-EEEEEecCCCCHHH
Confidence 444455542 23346777778888764 3666666422 23679999999999999999855 34444578888899
Q ss_pred HHHHHHh
Q 014549 356 LSEVMEQ 362 (423)
Q Consensus 356 l~~fi~~ 362 (423)
|.+||.+
T Consensus 104 l~~~i~~ 110 (111)
T cd02963 104 VVDFVRK 110 (111)
T ss_pred HHHHHhc
Confidence 9999875
No 211
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=97.52 E-value=0.00013 Score=69.75 Aligned_cols=103 Identities=15% Similarity=0.266 Sum_probs=70.7
Q ss_pred eeEecc-CCcccccC---CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 138 FNVVTS-EDFPSIFH---DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 138 v~~L~~-~nf~~~v~---~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
|.+|+. +.|-+.|. ....++|.||.|.+..|..+...+..+|..+.. ++|.+|... ..+ ++.+|+
T Consensus 127 v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~-vKFvkI~a~---~~~-~~~~f~------ 195 (265)
T PF02114_consen 127 VYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPE-VKFVKIRAS---KCP-ASENFP------ 195 (265)
T ss_dssp EEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT-SEEEEEEEC---GCC-TTTTS-------
T ss_pred EEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc-eEEEEEehh---ccC-cccCCc------
Confidence 788865 67877773 345688999999999999999999999998654 799999877 322 567777
Q ss_pred ccCccEEEEeCCCCCCCCCccccc---C-CCCHHHHHHHHHHh
Q 014549 214 RRGLPSLVAFPPGCKSSDCMTRFE---G-ELSVDAVTDWFATA 252 (423)
Q Consensus 214 i~~~Pti~~f~~g~~~~~~~~~y~---G-~~~~~~l~~fi~~~ 252 (423)
++..|||++|++|... .+...+. | ..+.++|-.|+.+.
T Consensus 196 ~~~LPtllvYk~G~l~-~~~V~l~~~~g~df~~~dlE~~L~~~ 237 (265)
T PF02114_consen 196 DKNLPTLLVYKNGDLI-GNFVGLTDLLGDDFFTEDLEAFLIEY 237 (265)
T ss_dssp TTC-SEEEEEETTEEE-EEECTGGGCT-TT--HHHHHHHHHTT
T ss_pred ccCCCEEEEEECCEEE-EeEEehHHhcCCCCCHHHHHHHHHHc
Confidence 8999999999998641 1111221 2 56778888888776
No 212
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=97.52 E-value=0.0006 Score=54.31 Aligned_cols=79 Identities=15% Similarity=0.255 Sum_probs=55.3
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+++. +....+.+..++..+.+.+.++.+.... ...++++|+|.+.|++++|+++ .....+.|..+.+.|
T Consensus 15 vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~--~~~l~~~~~i~~~Pt~~~~~~g-~~~~~~~g~~~~~~l 91 (96)
T cd02956 15 VVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDA--QPQIAQQFGVQALPTVYLFAAG-QPVDGFQGAQPEEQL 91 (96)
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccC--CHHHHHHcCCCCCCEEEEEeCC-EEeeeecCCCCHHHH
Confidence 444455542 2234667777887776666666665332 3789999999999999999854 333457898888999
Q ss_pred HHHHH
Q 014549 357 SEVME 361 (423)
Q Consensus 357 ~~fi~ 361 (423)
.+||+
T Consensus 92 ~~~l~ 96 (96)
T cd02956 92 RQMLD 96 (96)
T ss_pred HHHhC
Confidence 98874
No 213
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.50 E-value=0.00052 Score=54.35 Aligned_cols=79 Identities=19% Similarity=0.230 Sum_probs=56.1
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhc--cccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNY--WAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~--~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~ 354 (423)
++|.|+++.+ ....+.+..++..+ ...+.|+.+.... ...++++|+|.+.|++++|++++.....|.|..+.+
T Consensus 18 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~~~i~~~Pt~~~~~~~~~~~~~~~g~~~~~ 95 (101)
T cd02961 18 VLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA--NNDLCSEYGVRGYPTIKLFPNGSKEPVKYEGPRTLE 95 (101)
T ss_pred EEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc--hHHHHHhCCCCCCCEEEEEcCCCcccccCCCCcCHH
Confidence 5555555422 22356666677777 4566666664322 378999999999999999987766667788988888
Q ss_pred HHHHHH
Q 014549 355 RLSEVM 360 (423)
Q Consensus 355 ~l~~fi 360 (423)
.|.+|+
T Consensus 96 ~i~~~~ 101 (101)
T cd02961 96 SLVEFI 101 (101)
T ss_pred HHHhhC
Confidence 888774
No 214
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.50 E-value=0.00052 Score=55.27 Aligned_cols=67 Identities=18% Similarity=0.250 Sum_probs=50.8
Q ss_pred CchHHHHHHHhcc--ccceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549 292 ASPFVRQISRNYW--AYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (423)
Q Consensus 292 ~~~~~~~~a~~~~--~~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi 360 (423)
..+.+..++..+. ..+.++.+. -.. ...++++|+|.++|++++|++++.....|.|.++.+.|.+||
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~id--~~~~~~~~~~~~~i~~~P~~~~~~~~~~~~~~~~g~~~~~~l~~~i 105 (105)
T cd02998 36 LAPEYEKLAAVFANEDDVVIAKVD--ADEANKDLAKKYGVSGFPTLKFFPKGSTEPVKYEGGRDLEDLVKFV 105 (105)
T ss_pred hChHHHHHHHHhCCCCCEEEEEEE--CCCcchhhHHhCCCCCcCEEEEEeCCCCCccccCCccCHHHHHhhC
Confidence 4577777887765 234444543 223 468999999999999999988766777889999999998885
No 215
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=97.46 E-value=0.00095 Score=54.99 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=57.5
Q ss_pred hhhhhhhcCCCceEEEEEe-c---CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549 268 GKNFLAKTGPHKVKVIFFS-K---TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~-~---~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
+++++. .+.++|++|. + +.+| ..|.+..+|.+|.+.+.|+.+...+ .+.++.+|+|.+.||+++|+++.
T Consensus 20 ~~~~~~---~~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~--~~~la~~f~V~sIPTli~fkdGk 94 (111)
T cd02965 20 LDDWLA---AGGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRAD--EQALAARFGVLRTPALLFFRDGR 94 (111)
T ss_pred HHHHHh---CCCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCC--CHHHHHHcCCCcCCEEEEEECCE
Confidence 455553 2336666665 3 2222 4678888999998777787876443 46899999999999999999763
Q ss_pred cceeEecCCCChhHHH
Q 014549 342 VKPVVYYGSFNNSRLS 357 (423)
Q Consensus 342 ~~~~~y~g~~~~~~l~ 357 (423)
....+.|..+.+.+.
T Consensus 95 -~v~~~~G~~~~~e~~ 109 (111)
T cd02965 95 -YVGVLAGIRDWDEYV 109 (111)
T ss_pred -EEEEEeCccCHHHHh
Confidence 333446777766553
No 216
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.43 E-value=0.0009 Score=53.87 Aligned_cols=80 Identities=16% Similarity=0.218 Sum_probs=54.6
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhcc--ccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYW--AYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~--~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~ 354 (423)
++|.|+++.+ ....+.+..++..+. ..+.++.+.........++++|+|.++|++++|+++. ....|.|..+.+
T Consensus 20 ~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~~~~~~g~-~~~~~~g~~~~~ 98 (104)
T cd02997 20 VLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTFKYFENGK-FVEKYEGERTAE 98 (104)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEEEEEeCCC-eeEEeCCCCCHH
Confidence 4555665422 223566666776665 3355555554433257899999999999999998654 456788998988
Q ss_pred HHHHHH
Q 014549 355 RLSEVM 360 (423)
Q Consensus 355 ~l~~fi 360 (423)
.|.+||
T Consensus 99 ~l~~~l 104 (104)
T cd02997 99 DIIEFM 104 (104)
T ss_pred HHHhhC
Confidence 888875
No 217
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=0.00028 Score=56.37 Aligned_cols=49 Identities=24% Similarity=0.206 Sum_probs=43.3
Q ss_pred ccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCCh
Q 014549 41 DALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDP 90 (423)
Q Consensus 41 ~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~ 90 (423)
.||||+++++.+.||.|+|+.-...|||+. +..=--.+|++|+++|...
T Consensus 60 lIL~v~~s~~k~KikeaHrriM~~NHPD~G-GSPYlAsKINEAKdlLe~~ 108 (112)
T KOG0723|consen 60 LILGVTPSLDKDKIKEAHRRIMLANHPDRG-GSPYLASKINEAKDLLEGT 108 (112)
T ss_pred HHhCCCccccHHHHHHHHHHHHHcCCCcCC-CCHHHHHHHHHHHHHHhcc
Confidence 589999999999999999999999999997 5555667899999998643
No 218
>PLN02309 5'-adenylylsulfate reductase
Probab=97.42 E-value=0.00059 Score=70.00 Aligned_cols=99 Identities=10% Similarity=0.150 Sum_probs=67.6
Q ss_pred cccchhhhhhhhh-cCCCceEEEEEecC---CCCCchHHHHHHHhcccc-ceEEEEEccccccHHHHh-hcCCCCCCeEE
Q 014549 262 YTKESMGKNFLAK-TGPHKVKVIFFSKT---GERASPFVRQISRNYWAY-ASFAFVLWREEESSIWWN-TFEVESAPAIV 335 (423)
Q Consensus 262 it~~~~~~~fl~~-~~~~~~~vl~f~~~---~~~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~-~f~v~~~Ptl~ 335 (423)
++.++ +++.+.. .....++|.|+.+. |+...|.+..++..|... +.|+.++... ....++. +|+|.++|||+
T Consensus 350 Lt~~n-fe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~-~~~~la~~~~~I~~~PTil 427 (457)
T PLN02309 350 LSRAG-IENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADG-DQKEFAKQELQLGSFPTIL 427 (457)
T ss_pred CCHHH-HHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCC-cchHHHHhhCCCceeeEEE
Confidence 55554 4444432 22233566666653 233467778888887643 6677665331 1356775 69999999999
Q ss_pred EecCCCcceeEecC-CCChhHHHHHHHh
Q 014549 336 FLKDPGVKPVVYYG-SFNNSRLSEVMEQ 362 (423)
Q Consensus 336 lfk~~~~~~~~y~g-~~~~~~l~~fi~~ 362 (423)
+|+++...++.|.| .++.++|..||+.
T Consensus 428 ~f~~g~~~~v~Y~~~~R~~~~L~~fv~~ 455 (457)
T PLN02309 428 LFPKNSSRPIKYPSEKRDVDSLLSFVNS 455 (457)
T ss_pred EEeCCCCCeeecCCCCcCHHHHHHHHHH
Confidence 99998888999974 7999999999986
No 219
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.40 E-value=0.00068 Score=54.52 Aligned_cols=78 Identities=18% Similarity=0.248 Sum_probs=55.5
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhcccc--ceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC-cceeEecCCCCh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAY--ASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG-VKPVVYYGSFNN 353 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~--~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~-~~~~~y~g~~~~ 353 (423)
++|.|+++.+ ....+.+..++..+.+. +.++.++ ++..+++..+++.++|++++|+++. ..+..|.|..+.
T Consensus 21 ~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id---~~~~~~~~~~~~~~~Pt~~~~~~~~~~~~~~~~g~~~~ 97 (104)
T cd02995 21 VLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMD---ATANDVPSEFVVDGFPTILFFPAGDKSNPIKYEGDRTL 97 (104)
T ss_pred EEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEe---CcchhhhhhccCCCCCEEEEEcCCCcCCceEccCCcCH
Confidence 4555665432 33457777788777653 4555553 4445688899999999999998876 456778999999
Q ss_pred hHHHHHH
Q 014549 354 SRLSEVM 360 (423)
Q Consensus 354 ~~l~~fi 360 (423)
..|.+||
T Consensus 98 ~~l~~fi 104 (104)
T cd02995 98 EDLIKFI 104 (104)
T ss_pred HHHHhhC
Confidence 9999886
No 220
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.40 E-value=0.00077 Score=55.77 Aligned_cols=101 Identities=13% Similarity=0.052 Sum_probs=77.5
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHH---hhccceEEEEEcccchhhhHHHhhCCCCccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL---LEGIANTGMVELGDIRLATHLAERKPIGQIFFR 214 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~---l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i 214 (423)
|-++|.+|+..+..+.-+..+.|+.+ ..-..+.+.++++|+. ++|.+.|..+|.+ ......+.+| +
T Consensus 1 ~~e~t~e~~~~~~~~~~~~~~l~f~~--~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~---~~~~~~~~fg------l 69 (111)
T cd03072 1 VREITFENAEELTEEGLPFLILFHDK--DDLESLKEFKQAVARQLISEKGAINFLTADGD---KFRHPLLHLG------K 69 (111)
T ss_pred CcccccccHHHHhcCCCCeEEEEecc--hHHHHHHHHHHHHHHHHHhcCceEEEEEEech---HhhhHHHHcC------C
Confidence 45688888887787777777777733 2346789999999999 9999999999999 4444788899 6
Q ss_pred cC--ccEEEEeCCCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549 215 RG--LPSLVAFPPGCKSSDCMTR-FEGELSVDAVTDWFATA 252 (423)
Q Consensus 215 ~~--~Pti~~f~~g~~~~~~~~~-y~G~~~~~~l~~fi~~~ 252 (423)
++ +|.+.+....... ... +.+..+.++|.+|+.+.
T Consensus 70 ~~~~~P~i~i~~~~~~~---Ky~~~~~~~t~~~i~~Fv~~~ 107 (111)
T cd03072 70 TPADLPVIAIDSFRHMY---LFPDFEDVYVPGKLKQFVLDL 107 (111)
T ss_pred CHhHCCEEEEEcchhcC---cCCCCccccCHHHHHHHHHHH
Confidence 65 8999998764311 112 45889999999999876
No 221
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00057 Score=65.09 Aligned_cols=98 Identities=17% Similarity=0.292 Sum_probs=70.6
Q ss_pred cccchhhhhhhhhcCCCceEEE-EEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 262 YTKESMGKNFLAKTGPHKVKVI-FFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl-~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
+|..++....+..+ ..+|+++ |.++. |..+.|.+..++.+|++.+.++.|+... .+.++..|||.+.|++++|
T Consensus 28 vT~anfe~~V~~~S-~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~--~p~vAaqfgiqsIPtV~af 104 (304)
T COG3118 28 VTEANFEQEVIQSS-REVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDA--EPMVAAQFGVQSIPTVYAF 104 (304)
T ss_pred chHhHHHHHHHHHc-cCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCc--chhHHHHhCcCcCCeEEEe
Confidence 56666555555443 3445555 44432 2335788888999999999888885322 3889999999999999999
Q ss_pred cCCCccee-EecCCCChhHHHHHHHhhc
Q 014549 338 KDPGVKPV-VYYGSFNNSRLSEVMEQNK 364 (423)
Q Consensus 338 k~~~~~~~-~y~g~~~~~~l~~fi~~~~ 364 (423)
+++. |+ -|.|....+.|.+|+..+.
T Consensus 105 ~dGq--pVdgF~G~qPesqlr~~ld~~~ 130 (304)
T COG3118 105 KDGQ--PVDGFQGAQPESQLRQFLDKVL 130 (304)
T ss_pred eCCc--CccccCCCCcHHHHHHHHHHhc
Confidence 8753 44 3688888889999999853
No 222
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.37 E-value=0.0011 Score=53.42 Aligned_cols=79 Identities=18% Similarity=0.087 Sum_probs=57.4
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
++|.|+++. +....|.+..++..+.. .+.++.+... +.+.++++|+|.++||+++|+++. ...|.|..+.+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~--~~~~~~~~~~i~~~Pt~~~~~~g~--~~~~~G~~~~~~ 94 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVT--QEPGLSGRFFVTALPTIYHAKDGV--FRRYQGPRDKED 94 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEcc--CCHhHHHHcCCcccCEEEEeCCCC--EEEecCCCCHHH
Confidence 777777753 23346777777766543 3566666432 236799999999999999998764 467899999999
Q ss_pred HHHHHHh
Q 014549 356 LSEVMEQ 362 (423)
Q Consensus 356 l~~fi~~ 362 (423)
|..||++
T Consensus 95 l~~~i~~ 101 (101)
T cd02994 95 LISFIEE 101 (101)
T ss_pred HHHHHhC
Confidence 9999863
No 223
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=0.0014 Score=62.64 Aligned_cols=109 Identities=12% Similarity=0.192 Sum_probs=83.0
Q ss_pred cceeeEeccCCcccccC---CCCcEEEEEecC----CCccccccHHHHHHHHHHhhc--------cceEEEEEcccchhh
Q 014549 135 VHAFNVVTSEDFPSIFH---DSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEG--------IANTGMVELGDIRLA 199 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v~---~~~~~lV~FYap----wC~~C~~~~p~~~~~A~~l~~--------~~~~~~Vdc~~~~~~ 199 (423)
.+.|+.+|+.+|...+. .+-..+|+|.|- .|.-|++...+|.-+|..... .+=|+.||-++ -
T Consensus 39 ~~~VI~~n~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e---~ 115 (331)
T KOG2603|consen 39 ESGVIRMNDDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDE---S 115 (331)
T ss_pred CCCeEEecCcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccc---c
Confidence 45689999999999983 245577888874 699999999999999987632 24689999994 4
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCccccc---CCCCHHHHHHHHHHh
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFE---GELSVDAVTDWFATA 252 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~---G~~~~~~l~~fi~~~ 252 (423)
+++-+.++ ++..|++.+|.+....+.....+. -...+|++.+|+.+.
T Consensus 116 p~~Fq~l~------ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 116 PQVFQQLN------LNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred HHHHHHhc------ccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 55889999 889999999977654322233333 233499999999887
No 224
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=97.33 E-value=0.00028 Score=54.68 Aligned_cols=60 Identities=12% Similarity=0.122 Sum_probs=40.3
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh--hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL--ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~--~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
++.|+++||++|+++.+.++++. ..+...+..||-+++.. ...+.+..+ +.++|++ |.+|
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~--i~~~~~~~~v~~~~~~~~~~~~l~~~~g------~~~vP~v--~i~g 62 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLN--VKPAYEVVELDQLSNGSEIQDYLEEITG------QRTVPNI--FING 62 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcC--CCCCCEEEEeeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 47899999999999999998876 33334555555442211 123566667 8899997 4455
No 225
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=97.33 E-value=0.00061 Score=64.65 Aligned_cols=124 Identities=12% Similarity=0.126 Sum_probs=84.0
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceE--EEEEcccccc-HHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASF--AFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f--~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~ 353 (423)
++|-|+++.| ..+.|.+..+|..++....- +.....+|+. ..|+++|.|+++||+.+|++|....-.|-|.++.
T Consensus 16 vfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfrnG~~~~rEYRg~RsV 95 (375)
T KOG0912|consen 16 VFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFRNGEMMKREYRGQRSV 95 (375)
T ss_pred EeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeeeccchhhhhhccchhH
Confidence 4555776643 33567777777766543321 1222356765 7899999999999999999987766678999999
Q ss_pred hHHHHHHHhhccccCcccccccccccCCCCCCccCCCCCCcceEEEEEEc-cCChhhHHHH
Q 014549 354 SRLSEVMEQNKLQELPQLRSVTSMELGCDARGYSRAGSDTTIWYCVILAG-RLSPELNKMR 413 (423)
Q Consensus 354 ~~l~~fi~~~~~~~lp~l~~~~~~~~~c~~~~~~~~~~~~~~~~cvi~~~-~~~~~~~~~~ 413 (423)
+.|.+||++..-..+.++.+.+.....-.+ .| +..+.++- +++.+++-++
T Consensus 96 eaL~efi~kq~s~~i~Ef~sl~~l~n~~~p------~K----~~vIgyF~~kdspey~~~~ 146 (375)
T KOG0912|consen 96 EALIEFIEKQLSDPINEFESLDQLQNLDIP------SK----RTVIGYFPSKDSPEYDNLR 146 (375)
T ss_pred HHHHHHHHHHhccHHHHHHhHHHHHhhhcc------cc----ceEEEEeccCCCchHHHHH
Confidence 999999999766667777766665544221 22 35555554 5666655443
No 226
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.29 E-value=0.0019 Score=52.40 Aligned_cols=79 Identities=16% Similarity=0.194 Sum_probs=55.2
Q ss_pred ceEEEEEecCC---CCCchHHHHHHHhcccc---ceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCC
Q 014549 279 KVKVIFFSKTG---ERASPFVRQISRNYWAY---ASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF 351 (423)
Q Consensus 279 ~~~vl~f~~~~---~~~~~~~~~~a~~~~~~---~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~ 351 (423)
.++|.|+++.+ ....|.+..++..++.. +.++.+ +++ ...++++|+|.++|++++|+++ ....|.|..
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~v---d~~~~~~~~~~~~I~~~Pt~~l~~~~--~~~~~~G~~ 91 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKL---DATAYSSIASEFGVRGYPTIKLLKGD--LAYNYRGPR 91 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEE---ECccCHhHHhhcCCccccEEEEEcCC--CceeecCCC
Confidence 35555666532 33467777788777432 444444 333 3789999999999999999654 345688999
Q ss_pred ChhHHHHHHHh
Q 014549 352 NNSRLSEVMEQ 362 (423)
Q Consensus 352 ~~~~l~~fi~~ 362 (423)
+.+.|.+|+++
T Consensus 92 ~~~~l~~~~~~ 102 (104)
T cd03000 92 TKDDIVEFANR 102 (104)
T ss_pred CHHHHHHHHHh
Confidence 99999999976
No 227
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=97.26 E-value=0.0012 Score=56.29 Aligned_cols=55 Identities=16% Similarity=0.236 Sum_probs=41.4
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
+++++|.|| +.||+.|....|.+.++.+.+.+. +.+..|..+........+++++
T Consensus 23 gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~ 79 (140)
T cd03017 23 GKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYG 79 (140)
T ss_pred CCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 678999999 589999999999999999888753 5677776664444444555555
No 228
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=97.25 E-value=0.00062 Score=56.71 Aligned_cols=55 Identities=9% Similarity=0.054 Sum_probs=43.0
Q ss_pred CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhC
Q 014549 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~ 206 (423)
.+++.+|.||+. ||++|+...+.+.++.++++.. +.+..|..+.........+++
T Consensus 24 ~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~ 80 (124)
T PF00578_consen 24 KGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEY 80 (124)
T ss_dssp TTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhh
Confidence 568999999999 9999999999999999998864 688888876443334444444
No 229
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=97.24 E-value=0.00091 Score=53.89 Aligned_cols=82 Identities=16% Similarity=0.222 Sum_probs=57.6
Q ss_pred ceEEEEEe-cCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCC--CCCeEEEecCCCcceeEec-CCC
Q 014549 279 KVKVIFFS-KTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVE--SAPAIVFLKDPGVKPVVYY-GSF 351 (423)
Q Consensus 279 ~~~vl~f~-~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~--~~Ptl~lfk~~~~~~~~y~-g~~ 351 (423)
++++++|. ..+ +...+.++.+|.+|++.+.|+.+...+ ...+++.|++. +.|++++++........+. |.+
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~--~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~ 90 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADD--FGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEEL 90 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHh--hHHHHHHcCCChhhCCEEEEEecccccccCCCcccc
Confidence 35555554 322 233566788999999888888886433 36799999999 8999999987432233333 445
Q ss_pred ChhHHHHHHHh
Q 014549 352 NNSRLSEVMEQ 362 (423)
Q Consensus 352 ~~~~l~~fi~~ 362 (423)
+.+.|.+||.+
T Consensus 91 ~~~~l~~fi~~ 101 (103)
T cd02982 91 TAESLEEFVED 101 (103)
T ss_pred CHHHHHHHHHh
Confidence 88999999986
No 230
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=97.19 E-value=0.003 Score=51.83 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=64.4
Q ss_pred cccchhhhhhhhhcCCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe----
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL---- 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf---- 337 (423)
+++.+.++.|+... +..++|.+|.+..+.....+..+|..+++.+.|+.+. ...+.+++++. .|.+++|
T Consensus 5 i~s~~ele~f~~~~-~~~~VVG~F~~~~~~~~~~F~~vA~~~Rdd~~F~~t~-----~~~~~~~~~~~-~~~vvl~rp~~ 77 (107)
T cd03068 5 LQTLKQVQEFLRDG-DDVIIIGVFSGEEDPAYQLYQDAANSLREDYKFHHTF-----DSEIFKSLKVS-PGQLVVFQPEK 77 (107)
T ss_pred cCCHHHHHHHHhcC-CCEEEEEEECCCCCHHHHHHHHHHHhcccCCEEEEEC-----hHHHHHhcCCC-CCceEEECcHH
Confidence 33433356666432 1346666776543334556677888888888987764 34577888886 5778888
Q ss_pred --cCCCcceeEecCC-CChhH-HHHHHHhh
Q 014549 338 --KDPGVKPVVYYGS-FNNSR-LSEVMEQN 363 (423)
Q Consensus 338 --k~~~~~~~~y~g~-~~~~~-l~~fi~~~ 363 (423)
+..+....+|.|. .+.++ |..||..|
T Consensus 78 ~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 78 FQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred HhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 4566677889888 67666 99999875
No 231
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=97.17 E-value=0.0007 Score=53.83 Aligned_cols=97 Identities=13% Similarity=0.240 Sum_probs=74.8
Q ss_pred cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc----Ccc
Q 014549 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR----GLP 218 (423)
Q Consensus 143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~----~~P 218 (423)
..+|..+++...-+||.|..+--..-..+ ..+.++|+.++|.+.++-|||.+. +...||+++. |. .-|
T Consensus 9 ~KdfKKLLRTr~NVLvLy~ks~k~a~~~L-k~~~~~A~~vkG~gT~~~vdCgd~-e~kKLCKKlK------v~~~~kp~~ 80 (112)
T cd03067 9 HKDFKKLLRTRNNVLVLYSKSAKSAEALL-KLLSDVAQAVKGQGTIAWIDCGDS-ESRKLCKKLK------VDPSSKPKP 80 (112)
T ss_pred hHHHHHHHhhcCcEEEEEecchhhHHHHH-HHHHHHHHHhcCceeEEEEecCCh-HHHHHHHHHc------cCCCCCCCc
Confidence 35788889888889998887654333333 489999999999999999999943 3567999998 55 334
Q ss_pred -EEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549 219 -SLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 219 -ti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
++.=|.+|.. ...|+-..+..+|+.|++.
T Consensus 81 ~~LkHYKdG~f----HkdYdR~~t~kSmv~FlrD 110 (112)
T cd03067 81 VELKHYKDGDF----HTEYNRQLTFKSMVAFLRD 110 (112)
T ss_pred chhhcccCCCc----cccccchhhHHHHHHHhhC
Confidence 3566888876 3588888899999999864
No 232
>PRK09381 trxA thioredoxin; Provisional
Probab=97.15 E-value=0.0031 Score=51.53 Aligned_cols=81 Identities=15% Similarity=0.284 Sum_probs=58.3
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+.+.+ ....|.+..++..+.+.+.++.+.... ...++++|++.+.|++++|+++. ....+.|..+.+.|
T Consensus 24 vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~Pt~~~~~~G~-~~~~~~G~~~~~~l 100 (109)
T PRK09381 24 ILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQ--NPGTAPKYGIRGIPTLLLFKNGE-VAATKVGALSKGQL 100 (109)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCC--ChhHHHhCCCCcCCEEEEEeCCe-EEEEecCCCCHHHH
Confidence 4555555432 234677788888887777777775432 36789999999999999997543 33456788888999
Q ss_pred HHHHHhh
Q 014549 357 SEVMEQN 363 (423)
Q Consensus 357 ~~fi~~~ 363 (423)
..||..+
T Consensus 101 ~~~i~~~ 107 (109)
T PRK09381 101 KEFLDAN 107 (109)
T ss_pred HHHHHHh
Confidence 9999874
No 233
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.12 E-value=0.0034 Score=53.47 Aligned_cols=107 Identities=20% Similarity=0.266 Sum_probs=76.9
Q ss_pred eeeEeccCCc-ccccCCCCcEEEEEecC--CCcc-c-cccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCc
Q 014549 137 AFNVVTSEDF-PSIFHDSKPWLIQVYSD--GSYL-C-GQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQ 210 (423)
Q Consensus 137 ~v~~L~~~nf-~~~v~~~~~~lV~FYap--wC~~-C-~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~ 210 (423)
.|++|+++++ ++.-.++..-+|-|... -|.. + ..+...++++|+.++|. +.|+-+|.++. ..+.+.+|+.
T Consensus 3 ~~~~l~~~~~~~~~C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~---~~~~~~fgl~- 78 (130)
T cd02983 3 EIIELTSEDVFEETCEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQ---LDLEEALNIG- 78 (130)
T ss_pred ceEEecCHHHHHhhccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCccc---HHHHHHcCCC-
Confidence 3788998876 44455566666666442 1221 2 35788999999999999 89999999943 4488999932
Q ss_pred cccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHhh
Q 014549 211 IFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATAI 253 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~~ 253 (423)
-.++|+++++...+.. ...+.|..+.++|.+|+.+.+
T Consensus 79 ---~~~~P~v~i~~~~~~K---Y~~~~~~~t~e~i~~Fv~~~l 115 (130)
T cd02983 79 ---GFGYPAMVAINFRKMK---FATLKGSFSEDGINEFLRELS 115 (130)
T ss_pred ---ccCCCEEEEEecccCc---cccccCccCHHHHHHHHHHHH
Confidence 2469999999875421 222679999999999999883
No 234
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=97.10 E-value=0.0029 Score=54.75 Aligned_cols=87 Identities=16% Similarity=0.236 Sum_probs=59.8
Q ss_pred CceEEE-EEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549 278 HKVKVI-FFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (423)
Q Consensus 278 ~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~ 353 (423)
++++|| |++..| ....+.+..++..|...+.|+.+.+.......++++|+|.++|++++|..++..-..+.|..+.
T Consensus 20 gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~~v~~~~G~~~~ 99 (142)
T cd02950 20 GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGNEEGQSIGLQPK 99 (142)
T ss_pred CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCCEEEEEeCCCCH
Confidence 335555 444422 2345677778878776677888765443335789999999999999996544444456788888
Q ss_pred hHHHHHHHhhc
Q 014549 354 SRLSEVMEQNK 364 (423)
Q Consensus 354 ~~l~~fi~~~~ 364 (423)
+.|.++|....
T Consensus 100 ~~l~~~l~~l~ 110 (142)
T cd02950 100 QVLAQNLDALV 110 (142)
T ss_pred HHHHHHHHHHH
Confidence 88888888753
No 235
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=97.10 E-value=0.0015 Score=61.83 Aligned_cols=90 Identities=14% Similarity=0.138 Sum_probs=67.3
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc--------hhhhHHHhhCCCCccccccCccEEEEe
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI--------RLATHLAERKPIGQIFFRRGLPSLVAF 223 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~--------~~~~~l~~~~~~~~~~~i~~~Pti~~f 223 (423)
+++.-||.||...|++|++++|..+.+++... +.+-.|+.++. +....+++++| |..+|++++.
T Consensus 149 a~~~gL~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~Pal~Lv 220 (256)
T TIGR02739 149 SQSYGLFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLG------VKYFPALYLV 220 (256)
T ss_pred HhceeEEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcC------CccCceEEEE
Confidence 35689999999999999999999999999876 55566665533 11244778888 8899999999
Q ss_pred CCCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549 224 PPGCKSSDCMTR-FEGELSVDAVTDWFATA 252 (423)
Q Consensus 224 ~~g~~~~~~~~~-y~G~~~~~~l~~fi~~~ 252 (423)
.++... ... =.|..+.++|.+=+...
T Consensus 221 ~~~t~~---~~pv~~G~iS~deL~~Ri~~v 247 (256)
T TIGR02739 221 NPKSQK---MSPLAYGFISQDELKERILNV 247 (256)
T ss_pred ECCCCc---EEEEeeccCCHHHHHHHHHHH
Confidence 887542 111 13899999998765544
No 236
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.10 E-value=0.0049 Score=48.92 Aligned_cols=81 Identities=16% Similarity=0.290 Sum_probs=56.4
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
+++.|+++.+ ....+.+..++..+.+.+.|+.+.... ...++++|++.+.|++++|+++. ....+.|..+.+.|
T Consensus 17 vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l 93 (101)
T TIGR01068 17 VLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDE--NPDIAAKYGIRSIPTLLLFKNGK-EVDRSVGALPKAAL 93 (101)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCC--CHHHHHHcCCCcCCEEEEEeCCc-EeeeecCCCCHHHH
Confidence 4444554422 223566677777776667777775332 36789999999999999997543 33455788888999
Q ss_pred HHHHHhh
Q 014549 357 SEVMEQN 363 (423)
Q Consensus 357 ~~fi~~~ 363 (423)
.+||+++
T Consensus 94 ~~~l~~~ 100 (101)
T TIGR01068 94 KQLINKN 100 (101)
T ss_pred HHHHHhh
Confidence 9999863
No 237
>PHA02278 thioredoxin-like protein
Probab=97.10 E-value=0.0031 Score=51.37 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=53.2
Q ss_pred eEEEEEecC-C--CCCchHHHHHHHhccccceEEEEEccccc--cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChh
Q 014549 280 VKVIFFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNS 354 (423)
Q Consensus 280 ~~vl~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~ 354 (423)
++|.|+++. + ....|.+..++.++.....|..+++.... .++++++|+|.+.||+++|+++. .-....|..+.+
T Consensus 17 vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~fk~G~-~v~~~~G~~~~~ 95 (103)
T PHA02278 17 VIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGYKDGQ-LVKKYEDQVTPM 95 (103)
T ss_pred EEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEEECCE-EEEEEeCCCCHH
Confidence 444455542 2 33467787777765444567777654321 25799999999999999999763 333457877777
Q ss_pred HHHHH
Q 014549 355 RLSEV 359 (423)
Q Consensus 355 ~l~~f 359 (423)
.|.++
T Consensus 96 ~l~~~ 100 (103)
T PHA02278 96 QLQEL 100 (103)
T ss_pred HHHhh
Confidence 77765
No 238
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.09 E-value=0.0024 Score=51.75 Aligned_cols=63 Identities=14% Similarity=0.237 Sum_probs=46.0
Q ss_pred HHHhccccceEEEEEccccc--cHHHHhhcCCCCCCeEEEecC-CCcceeEecCCCChhHHHHHHH
Q 014549 299 ISRNYWAYASFAFVLWREEE--SSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVME 361 (423)
Q Consensus 299 ~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~~Ptl~lfk~-~~~~~~~y~g~~~~~~l~~fi~ 361 (423)
++..+.+.+.++.+...... ...++++|++.+.|++++|++ ++..+..+.|.++.+.|.++|+
T Consensus 39 ~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~~~~~g~~~~~~~G~~~~~~l~~~l~ 104 (104)
T cd02953 39 VQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFYGPGGEPEPLRLPGFLTADEFLEALE 104 (104)
T ss_pred HHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEECCCCCCCCcccccccCHHHHHHHhC
Confidence 44455545666666644322 367999999999999999986 4556677789999998888763
No 239
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.07 E-value=0.0026 Score=59.22 Aligned_cols=83 Identities=12% Similarity=0.126 Sum_probs=59.8
Q ss_pred ceEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe-cCCCChh
Q 014549 279 KVKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY-YGSFNNS 354 (423)
Q Consensus 279 ~~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y-~g~~~~~ 354 (423)
.++|.|+++.+ ....|.+..++.++.+.+.++.+... +...++++|+|.++||+++|+++ +.+.| .|..+.+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~--~~~~l~~~~~I~~~PTl~~f~~G--~~v~~~~G~~s~e 129 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDAT--RALNLAKRFAIKGYPTLLLFDKG--KMYQYEGGDRSTE 129 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCc--ccHHHHHHcCCCcCCEEEEEECC--EEEEeeCCCCCHH
Confidence 35666776532 22457777788888777666666422 23789999999999999999865 33444 5778999
Q ss_pred HHHHHHHhhcc
Q 014549 355 RLSEVMEQNKL 365 (423)
Q Consensus 355 ~l~~fi~~~~~ 365 (423)
.|.+|+..+..
T Consensus 130 ~L~~fi~~~~~ 140 (224)
T PTZ00443 130 KLAAFALGDFK 140 (224)
T ss_pred HHHHHHHHHHH
Confidence 99999988643
No 240
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=97.05 E-value=0.0016 Score=56.62 Aligned_cols=71 Identities=20% Similarity=0.213 Sum_probs=52.1
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhcc---ceEEEEEcccc----------------------hhhhHHHhhC
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI---ANTGMVELGDI----------------------RLATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~---~~~~~Vdc~~~----------------------~~~~~l~~~~ 206 (423)
.++++.++|-|-||+.|+.|.|...++-++++.. +.|.-|+-+.+ +...+|+++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 3588999999999999999999998888887765 44444544322 1233455555
Q ss_pred CCCccccccCccEEEEeCCCCC
Q 014549 207 PIGQIFFRRGLPSLVAFPPGCK 228 (423)
Q Consensus 207 ~~~~~~~i~~~Pti~~f~~g~~ 228 (423)
+ |++.|++++..+...
T Consensus 112 ~------v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 112 E------VKGIPALVILKPDGT 127 (157)
T ss_pred c------cCcCceeEEecCCCC
Confidence 5 999999998877653
No 241
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=97.05 E-value=0.0028 Score=52.44 Aligned_cols=99 Identities=17% Similarity=0.150 Sum_probs=68.3
Q ss_pred eEeccCCcccccCCCCcEEEEEe----cCCCccccccHHHHHHHHHHhh-ccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 139 NVVTSEDFPSIFHDSKPWLIQVY----SDGSYLCGQFSGAWKTIAALLE-GIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 139 ~~L~~~nf~~~v~~~~~~lV~FY----apwC~~C~~~~p~~~~~A~~l~-~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.++|.+|..... ..+.++-|| ++.-..-..+.+.+.++|+.++ |.+.|+.+|.+ ......+.+|
T Consensus 2 ~~~~~en~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~---~~~~~l~~fg------ 70 (111)
T cd03073 2 GHRTKDNRAQFT--KKPLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKE---DFSHELEEFG------ 70 (111)
T ss_pred CeeccchHHHhc--cCCeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHH---HHHHHHHHcC------
Confidence 346666665553 233344443 3333444678899999999999 79999999998 4444778889
Q ss_pred cc--C--ccEEEEeCCCCCCCCCcccccCCC-CHHHHHHHHHHh
Q 014549 214 RR--G--LPSLVAFPPGCKSSDCMTRFEGEL-SVDAVTDWFATA 252 (423)
Q Consensus 214 i~--~--~Pti~~f~~g~~~~~~~~~y~G~~-~~~~l~~fi~~~ 252 (423)
++ . +|++.++..+.. .....+.. +.++|.+|+.+.
T Consensus 71 l~~~~~~~P~~~i~~~~~~----KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 71 LDFSGGEKPVVAIRTAKGK----KYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred CCcccCCCCEEEEEeCCCC----ccCCCcccCCHHHHHHHHHHh
Confidence 55 4 999999874332 01235777 999999999764
No 242
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=97.04 E-value=0.0024 Score=57.58 Aligned_cols=93 Identities=13% Similarity=0.107 Sum_probs=56.2
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHH-hhc--cceEEEEEcccchh-hhHHH--------hhCC---C--------
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-LEG--IANTGMVELGDIRL-ATHLA--------ERKP---I-------- 208 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~-l~~--~~~~~~Vdc~~~~~-~~~l~--------~~~~---~-------- 208 (423)
.+++++|+|||.||+.|+.-.|..++++.. +.- .=....||-++... ..... ..++ +
T Consensus 58 ~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v 137 (184)
T TIGR01626 58 AGKVRVVHHIAGRTSAKEXNASLIDAIKAAKFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAV 137 (184)
T ss_pred CCCEEEEEEEecCCChhhccchHHHHHHHcCCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchH
Confidence 389999999999999999999999999543 111 01226666553210 01111 1111 0
Q ss_pred CccccccCccEE-EEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549 209 GQIFFRRGLPSL-VAFPPGCKSSDCMTRFEGELSVDAVTD 247 (423)
Q Consensus 209 ~~~~~i~~~Pti-~~f~~g~~~~~~~~~y~G~~~~~~l~~ 247 (423)
...+++.+.|+- .++-+.+.. ...+.|..+.+++.+
T Consensus 138 ~~~~gv~~~P~T~fVIDk~GkV---v~~~~G~l~~ee~e~ 174 (184)
T TIGR01626 138 KNAWQLNSEDSAIIVLDKTGKV---KFVKEGALSDSDIQT 174 (184)
T ss_pred HHhcCCCCCCceEEEECCCCcE---EEEEeCCCCHHHHHH
Confidence 034558899766 455443332 345569888887766
No 243
>PRK10996 thioredoxin 2; Provisional
Probab=97.04 E-value=0.0034 Score=54.01 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=51.2
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
.+.+..++.++.+.+.|+.+... +.+.++++|+|.+.|++++|+++ .....+.|..+.+.|.+|+++.
T Consensus 71 ~~~l~~l~~~~~~~v~~~~vd~~--~~~~l~~~~~V~~~Ptlii~~~G-~~v~~~~G~~~~e~l~~~l~~~ 138 (139)
T PRK10996 71 APIFEDVAAERSGKVRFVKVNTE--AERELSARFRIRSIPTIMIFKNG-QVVDMLNGAVPKAPFDSWLNEA 138 (139)
T ss_pred HHHHHHHHHHhCCCeEEEEEeCC--CCHHHHHhcCCCccCEEEEEECC-EEEEEEcCCCCHHHHHHHHHHh
Confidence 45666677777666666666532 24789999999999999999854 3444568888999999999863
No 244
>PTZ00256 glutathione peroxidase; Provisional
Probab=97.04 E-value=0.0054 Score=55.37 Aligned_cols=42 Identities=5% Similarity=-0.116 Sum_probs=35.0
Q ss_pred CCc-EEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549 153 SKP-WLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 153 ~~~-~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~ 194 (423)
+++ +++.++|.||+.|++-.|.++++.+++++. +.|..|+|+
T Consensus 40 Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 40 GKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred CCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 444 456669999999999999999999999865 788888874
No 245
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=96.98 E-value=0.0017 Score=54.21 Aligned_cols=94 Identities=10% Similarity=0.086 Sum_probs=65.1
Q ss_pred CCCCcEEEEEecC----CCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 151 HDSKPWLIQVYSD----GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 151 ~~~~~~lV~FYap----wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
++.+..+|.+|+| ||..|+..- .=+++.+-+.....+-..|.... ....++..++ +.+||++.++...
T Consensus 15 ~e~K~llVylhs~~~~~~~~fc~~~l-~~~~v~~~ln~~fv~w~~dv~~~-eg~~la~~l~------~~~~P~~~~l~~~ 86 (116)
T cd02991 15 QELRFLLVYLHGDDHQDTDEFCRNTL-CAPEVIEYINTRMLFWACSVAKP-EGYRVSQALR------ERTYPFLAMIMLK 86 (116)
T ss_pred hhCCEEEEEEeCCCCccHHHHHHHHc-CCHHHHHHHHcCEEEEEEecCCh-HHHHHHHHhC------CCCCCEEEEEEec
Confidence 6789999999999 788885533 12345556666666667776644 3356899999 9999999988422
Q ss_pred CCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 227 CKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 227 ~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.....-..+..|..++++|+..+...
T Consensus 87 ~~~~~vv~~i~G~~~~~~ll~~L~~~ 112 (116)
T cd02991 87 DNRMTIVGRLEGLIQPEDLINRLTFI 112 (116)
T ss_pred CCceEEEEEEeCCCCHHHHHHHHHHH
Confidence 11101133577999999999988765
No 246
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.96 E-value=0.0024 Score=60.14 Aligned_cols=89 Identities=16% Similarity=0.127 Sum_probs=63.4
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEccc--ch------hhhHHHhhCCCCccccccCccEEEEeC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGD--IR------LATHLAERKPIGQIFFRRGLPSLVAFP 224 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~--~~------~~~~l~~~~~~~~~~~i~~~Pti~~f~ 224 (423)
++.-|+.||.+.|++|++++|..+.+++...= .+..|..|. .+ .+...+++++ |..+|++++..
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~~yg~--~v~~VS~DG~~~p~fp~~~~d~gqa~~l~------v~~~PAl~Lv~ 214 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRDTYGL--SVIPVSVDGVINPLLPDSRTDQGQAQRLG------VKYFPALMLVD 214 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHHHhCC--eEEEEecCCCCCCCCCCCccChhHHHhcC------CcccceEEEEE
Confidence 56889999999999999999999999998763 444444432 11 1233556677 99999999998
Q ss_pred CCCCCCCCccc-ccCCCCHHHHHHHHHHh
Q 014549 225 PGCKSSDCMTR-FEGELSVDAVTDWFATA 252 (423)
Q Consensus 225 ~g~~~~~~~~~-y~G~~~~~~l~~fi~~~ 252 (423)
++... ... =.|..+.++|.+=+...
T Consensus 215 ~~t~~---~~pv~~G~iS~deL~~Ri~~v 240 (248)
T PRK13703 215 PKSGS---VRPLSYGFITQDDLAKRFLNV 240 (248)
T ss_pred CCCCc---EEEEeeccCCHHHHHHHHHHH
Confidence 87542 111 23889999887755433
No 247
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=96.96 E-value=0.00037 Score=58.15 Aligned_cols=69 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred CCCCcEEEEEecC-------CCccccccHHHHHHHHHHhhccceEEEEEcc-----cchhhhHHHh--hCCCCccccccC
Q 014549 151 HDSKPWLIQVYSD-------GSYLCGQFSGAWKTIAALLEGIANTGMVELG-----DIRLATHLAE--RKPIGQIFFRRG 216 (423)
Q Consensus 151 ~~~~~~lV~FYap-------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~-----~~~~~~~l~~--~~~~~~~~~i~~ 216 (423)
+++++.+|.|++. ||+.|.+..|..+++-....+...+..|... +++.+ ..-. +++ +++
T Consensus 17 ~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n-~fR~~p~~~------l~~ 89 (119)
T PF06110_consen 17 NSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNN-PFRTDPDLK------LKG 89 (119)
T ss_dssp TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTS-HHHH--CC---------S
T ss_pred cCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCC-CceEcceee------eee
Confidence 4568899999964 9999999999999988776555666666654 22211 1222 244 999
Q ss_pred ccEEEEeCCC
Q 014549 217 LPSLVAFPPG 226 (423)
Q Consensus 217 ~Pti~~f~~g 226 (423)
+|||+-+..+
T Consensus 90 IPTLi~~~~~ 99 (119)
T PF06110_consen 90 IPTLIRWETG 99 (119)
T ss_dssp SSEEEECTSS
T ss_pred cceEEEECCC
Confidence 9999999776
No 248
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=96.95 E-value=0.0038 Score=53.17 Aligned_cols=103 Identities=12% Similarity=0.117 Sum_probs=68.8
Q ss_pred ecccchhhhhhhhhcCCCceEEEEEecCC-C-------CCchHHHHHHHhcccc-ceEEEEEccccccHHHHhhcCCCC-
Q 014549 261 YYTKESMGKNFLAKTGPHKVKVIFFSKTG-E-------RASPFVRQISRNYWAY-ASFAFVLWREEESSIWWNTFEVES- 330 (423)
Q Consensus 261 ~it~~~~~~~fl~~~~~~~~~vl~f~~~~-~-------~~~~~~~~~a~~~~~~-~~f~~v~~~~~~~~~l~~~f~v~~- 330 (423)
.+++++.++.. ...+.++|+.|-++. + .....++.+|.+|++. +.|+++...+ ...+.+.||+++
T Consensus 6 ~l~~~~~~~~~---C~~~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~--~~~~~~~fgl~~~ 80 (130)
T cd02983 6 ELTSEDVFEET---CEEKQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGA--QLDLEEALNIGGF 80 (130)
T ss_pred EecCHHHHHhh---ccCCCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcc--cHHHHHHcCCCcc
Confidence 35654433322 223458888775421 1 1234456689999998 8888886443 245999999964
Q ss_pred -CCeEEEecCCCcceeEecCCCChhHHHHHHHhhccccC
Q 014549 331 -APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQNKLQEL 368 (423)
Q Consensus 331 -~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~~~~~l 368 (423)
+|+++++.....+...+.|+++.++|.+|++...-..+
T Consensus 81 ~~P~v~i~~~~~~KY~~~~~~~t~e~i~~Fv~~~l~Gkl 119 (130)
T cd02983 81 GYPAMVAINFRKMKFATLKGSFSEDGINEFLRELSYGRG 119 (130)
T ss_pred CCCEEEEEecccCccccccCccCHHHHHHHHHHHHcCCc
Confidence 89999997754333336799999999999999755544
No 249
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=96.93 E-value=0.0062 Score=54.36 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=36.5
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~ 195 (423)
+++++|.|| +.||+.|..-.|.+.++++++... +.+..|.++.
T Consensus 29 Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~ 73 (173)
T cd03015 29 GKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDS 73 (173)
T ss_pred CCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 578999999 799999999999999999999754 6777777763
No 250
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.93 E-value=0.0064 Score=50.43 Aligned_cols=95 Identities=16% Similarity=0.182 Sum_probs=61.5
Q ss_pred hhhhhhhcCCCceEEEEEecC---CCCCchHHHHHH-H--hccccceEEEEEcccc---ccHHHHhhcCCCC--CCeEEE
Q 014549 268 GKNFLAKTGPHKVKVIFFSKT---GERASPFVRQIS-R--NYWAYASFAFVLWREE---ESSIWWNTFEVES--APAIVF 336 (423)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~---~~~~~~~~~~~a-~--~~~~~~~f~~v~~~~~---~~~~l~~~f~v~~--~Ptl~l 336 (423)
++..+.... ..++=|+-. ++ ..-.+..+| . +-...+-++.|.+.+- ++.+|+++|++.. +|.+++
T Consensus 14 FdKvi~kf~---~~LVKFD~ayPyGe-Khd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv~~L 89 (126)
T PF07912_consen 14 FDKVIPKFK---YVLVKFDVAYPYGE-KHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPVIYL 89 (126)
T ss_dssp HHHHGGGSS---EEEEEEEESS--CH-HHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SEEEE
T ss_pred hhheeccCc---eEEEEEeccCCCcc-hHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCEEEE
Confidence 445554332 455555521 11 234455555 2 2345677788877654 4588999999964 899999
Q ss_pred ecCCCcceeEe--cCCCChhHHHHHHHhhccc
Q 014549 337 LKDPGVKPVVY--YGSFNNSRLSEVMEQNKLQ 366 (423)
Q Consensus 337 fk~~~~~~~~y--~g~~~~~~l~~fi~~~~~~ 366 (423)
|+.+.+.|+.| +|+.+.++|..|+.+|.-.
T Consensus 90 F~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~~ 121 (126)
T PF07912_consen 90 FVGDKEEPVRYPFDGDVTADNLQRFVKSNTGL 121 (126)
T ss_dssp EESSTTSEEEE-TCS-S-HHHHHHHHHHTSS-
T ss_pred ecCCCCCCccCCccCCccHHHHHHHHHhCCCe
Confidence 99888899999 8999999999999998543
No 251
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=96.92 E-value=0.0025 Score=56.71 Aligned_cols=54 Identities=9% Similarity=0.054 Sum_probs=43.5
Q ss_pred CCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
+++++|.||+.| |+.|.+-.|.+.++++++. .+.|..|+++........+++++
T Consensus 44 Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~-~~~vv~vs~D~~~~~~~f~~~~~ 98 (167)
T PRK00522 44 GKRKVLNIFPSIDTGVCATSVRKFNQEAAELD-NTVVLCISADLPFAQKRFCGAEG 98 (167)
T ss_pred CCEEEEEEEcCCCCCccHHHHHHHHHHHHHcC-CcEEEEEeCCCHHHHHHHHHhCC
Confidence 568999999999 9999999999999999984 56788888875444455666666
No 252
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=96.91 E-value=0.0029 Score=67.21 Aligned_cols=79 Identities=19% Similarity=0.236 Sum_probs=63.6
Q ss_pred CCcEEE-EEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCC
Q 014549 153 SKPWLI-QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSD 231 (423)
Q Consensus 153 ~~~~lV-~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~ 231 (423)
+++.-| -|++|+|++|.+....++++|.+.. .+..-.||.+ ..++++++|+ |.++|++++ +|+.
T Consensus 475 ~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~-~i~~~~i~~~---~~~~~~~~~~------v~~vP~~~i--~~~~--- 539 (555)
T TIGR03143 475 TKPVNIKIGVSLSCTLCPDVVLAAQRIASLNP-NVEAEMIDVS---HFPDLKDEYG------IMSVPAIVV--DDQQ--- 539 (555)
T ss_pred CCCeEEEEEECCCCCCcHHHHHHHHHHHHhCC-CceEEEEECc---ccHHHHHhCC------ceecCEEEE--CCEE---
Confidence 455544 5589999999999999999988754 4677788888 5667999999 999999876 5543
Q ss_pred CcccccCCCCHHHHHHHH
Q 014549 232 CMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 232 ~~~~y~G~~~~~~l~~fi 249 (423)
.+.|..+.++|++|+
T Consensus 540 ---~~~G~~~~~~~~~~~ 554 (555)
T TIGR03143 540 ---VYFGKKTIEEMLELI 554 (555)
T ss_pred ---EEeeCCCHHHHHHhh
Confidence 678988999999886
No 253
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.90 E-value=0.0012 Score=54.24 Aligned_cols=80 Identities=10% Similarity=0.024 Sum_probs=56.3
Q ss_pred Cccccc---CCCCcEEEEEecC--------CCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccc
Q 014549 145 DFPSIF---HDSKPWLIQVYSD--------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFF 213 (423)
Q Consensus 145 nf~~~v---~~~~~~lV~FYap--------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~ 213 (423)
.|.+.+ .+++..+|.|+++ ||+.|.+..|.+.++-+.....+.|..|+..+.+.=.+.+..|...-.+
T Consensus 14 ~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~d~~~- 92 (128)
T KOG3425|consen 14 SFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRKDPGI- 92 (128)
T ss_pred HHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCccccCCCc-
Confidence 344444 4556699999974 9999999999999999977777899999987443333333333221112
Q ss_pred ccCccEEEEeCC
Q 014549 214 RRGLPSLVAFPP 225 (423)
Q Consensus 214 i~~~Pti~~f~~ 225 (423)
+.++||++=+.+
T Consensus 93 lt~vPTLlrw~~ 104 (128)
T KOG3425|consen 93 LTAVPTLLRWKR 104 (128)
T ss_pred eeecceeeEEcC
Confidence 389999998875
No 254
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=96.88 E-value=0.0088 Score=48.53 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=53.7
Q ss_pred CceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEcccccc-HHHHhhcCCCCCCeEEEecCCCcceeEecCCCC
Q 014549 278 HKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFN 352 (423)
Q Consensus 278 ~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~-~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~ 352 (423)
++++|+ |+++. ..| ..|.+..++.+| ..+.|+.++..+... ..++++|+|.+.||+++|+++. ....+.|. .
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~-~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~G~-~v~~~~G~-~ 91 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC-NDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKDGE-KIHEEEGI-G 91 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC-CCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeCCe-EEEEEeCC-C
Confidence 445555 55542 223 467778788888 567788776544322 4799999999999999998653 44556774 4
Q ss_pred hhHHHHHHHh
Q 014549 353 NSRLSEVMEQ 362 (423)
Q Consensus 353 ~~~l~~fi~~ 362 (423)
.+.|.+-+..
T Consensus 92 ~~~l~~~~~~ 101 (103)
T cd02985 92 PDELIGDVLY 101 (103)
T ss_pred HHHHHHHHHh
Confidence 5666655543
No 255
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=96.84 E-value=0.0064 Score=49.19 Aligned_cols=92 Identities=13% Similarity=0.208 Sum_probs=56.5
Q ss_pred ccchhhhhhhhhcCCCceEEE-EEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 263 TKESMGKNFLAKTGPHKVKVI-FFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 263 t~~~~~~~fl~~~~~~~~~vl-~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
++.+.+++.++. ++++++ |+++.+ ....|.+..++..+.+ .+.|+.+... ..+++++|+|...||+++|
T Consensus 5 ~~~~~~~~~i~~---~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d---~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 5 NNQEEWEELLSN---KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD---TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred cCHHHHHHHHcc---CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC---CHHHHHHcCCCcCcEEEEE
Confidence 333335555542 335444 555432 2235667767777753 3456666433 4678999999999999999
Q ss_pred cCCCcceeEecCCCChhHHHHHHHh
Q 014549 338 KDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 338 k~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
+++... ....| .+...|.++|.+
T Consensus 79 ~~g~~~-~~~~G-~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGELV-AVIRG-ANAPLLNKTITE 101 (102)
T ss_pred ECCEEE-EEEec-CChHHHHHHHhh
Confidence 865433 22345 477888888865
No 256
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=96.84 E-value=0.0042 Score=65.39 Aligned_cols=82 Identities=15% Similarity=0.144 Sum_probs=67.4
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
...-+-.|++|+|++|......++++|.. .+.+..-.||.. .+++++++|+ |.++|++++ +|..
T Consensus 116 ~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~~~~id~~---~~~~~~~~~~------v~~VP~~~i--~~~~---- 179 (517)
T PRK15317 116 GDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNITHTMIDGA---LFQDEVEARN------IMAVPTVFL--NGEE---- 179 (517)
T ss_pred CCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCceEEEEEch---hCHhHHHhcC------CcccCEEEE--CCcE----
Confidence 34568889999999999999999888875 446788888988 6677999999 999999865 5543
Q ss_pred cccccCCCCHHHHHHHHHHh
Q 014549 233 MTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+.|..+.++|++.+.+.
T Consensus 180 --~~~g~~~~~~~~~~~~~~ 197 (517)
T PRK15317 180 --FGQGRMTLEEILAKLDTG 197 (517)
T ss_pred --EEecCCCHHHHHHHHhcc
Confidence 688999999999988754
No 257
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=96.80 E-value=0.0071 Score=52.68 Aligned_cols=56 Identities=11% Similarity=0.046 Sum_probs=41.8
Q ss_pred CCCcEEEEEecC-CCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549 152 DSKPWLIQVYSD-GSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 152 ~~~~~lV~FYap-wC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
.+++++|.||+. ||+.|....+.+.++.+.+++. +.+..|+.+........+++++
T Consensus 29 ~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~ 86 (154)
T PRK09437 29 QGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKEL 86 (154)
T ss_pred CCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhC
Confidence 457899999976 6888999999999999998764 6777777764444444555555
No 258
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0098 Score=54.43 Aligned_cols=77 Identities=16% Similarity=0.168 Sum_probs=64.7
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~ 230 (423)
...+..++.||++||..|+++...++.+|+.. ..+.+.+++.+ ...++|..+. +...|.+..+..|..
T Consensus 15 ~~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~-~~~~~~k~~a~---~~~eis~~~~------v~~vp~~~~~~~~~~-- 82 (227)
T KOG0911|consen 15 QKGKLLVLHFWAIWAVVQKQMDQVFDHLAEYF-KNAQFLKLEAE---EFPEISNLIA------VEAVPYFVFFFLGEK-- 82 (227)
T ss_pred hccchhhhhhhhhhhhhhhhHHHHHHHHHHhh-hhheeeeehhh---hhhHHHHHHH------HhcCceeeeeecchh--
Confidence 47788899999999999999999999999998 66899999999 6667999988 899999999987765
Q ss_pred CCcccccCCCC
Q 014549 231 DCMTRFEGELS 241 (423)
Q Consensus 231 ~~~~~y~G~~~ 241 (423)
..+..|...
T Consensus 83 --v~~l~~~~~ 91 (227)
T KOG0911|consen 83 --VDRLSGADP 91 (227)
T ss_pred --hhhhhccCc
Confidence 344555443
No 259
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.75 E-value=0.0096 Score=49.31 Aligned_cols=78 Identities=10% Similarity=0.181 Sum_probs=50.5
Q ss_pred eEEEEEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe------c-C
Q 014549 280 VKVIFFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY------Y-G 349 (423)
Q Consensus 280 ~~vl~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y------~-g 349 (423)
++|.|+.+. ..| ..|.+..++.+|. .+.|..+.... ...++++|+|.+.||+++|+++....... . +
T Consensus 25 vvV~f~a~~c~~C~~~~p~l~~la~~~~-~i~f~~Vd~~~--~~~l~~~~~v~~vPt~l~fk~G~~v~~~~g~~~~~~~~ 101 (113)
T cd02989 25 VVCHFYHPEFFRCKIMDKHLEILAKKHL-ETKFIKVNAEK--APFLVEKLNIKVLPTVILFKNGKTVDRIVGFEELGGKD 101 (113)
T ss_pred EEEEEECCCCccHHHHHHHHHHHHHHcC-CCEEEEEEccc--CHHHHHHCCCccCCEEEEEECCEEEEEEECccccCCCC
Confidence 455555543 223 3677777888775 46777775333 36799999999999999999875332111 1 3
Q ss_pred CCChhHHHHHH
Q 014549 350 SFNNSRLSEVM 360 (423)
Q Consensus 350 ~~~~~~l~~fi 360 (423)
+++.+++..|+
T Consensus 102 ~~~~~~~e~~~ 112 (113)
T cd02989 102 DFSTETLEKRL 112 (113)
T ss_pred CCCHHHHHHHh
Confidence 45667777765
No 260
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.75 E-value=0.0093 Score=48.85 Aligned_cols=80 Identities=21% Similarity=0.270 Sum_probs=57.9
Q ss_pred CceEEEEE-ec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549 278 HKVKVIFF-SK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (423)
Q Consensus 278 ~~~~vl~f-~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~ 353 (423)
++++|+.| +. + ++...|.+..+|.+|.+ +.|..|.+.+ ..++++.++|...||+++||++..... +-|. +.
T Consensus 21 ~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~-v~Flkvdvde--~~~~~~~~~V~~~PTf~f~k~g~~~~~-~vGa-~~ 95 (106)
T KOG0907|consen 21 DKLVVVDFYATWCGPCKAIAPKFEKLAEKYPD-VVFLKVDVDE--LEEVAKEFNVKAMPTFVFYKGGEEVDE-VVGA-NK 95 (106)
T ss_pred CCeEEEEEECCCCcchhhhhhHHHHHHHHCCC-CEEEEEeccc--CHhHHHhcCceEeeEEEEEECCEEEEE-EecC-CH
Confidence 46666644 43 2 34467999999999987 8999998766 678999999999999999997665432 3343 33
Q ss_pred hHHHHHHHh
Q 014549 354 SRLSEVMEQ 362 (423)
Q Consensus 354 ~~l~~fi~~ 362 (423)
..|.+.|..
T Consensus 96 ~~l~~~i~~ 104 (106)
T KOG0907|consen 96 AELEKKIAK 104 (106)
T ss_pred HHHHHHHHh
Confidence 466666654
No 261
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=96.74 E-value=0.0096 Score=49.15 Aligned_cols=76 Identities=11% Similarity=0.185 Sum_probs=47.9
Q ss_pred cccchhhhhhhhhcCCCceEEE-EEecC-C--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 262 YTKESMGKNFLAKTGPHKVKVI-FFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl-~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
+++++ +.+.+...+.+.++|+ |+++. . ....|.+..+|.+|. .+.|+.+..... .++++|+|.+.||+++|
T Consensus 9 i~~~~-f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~-~v~f~~vd~~~~---~l~~~~~i~~~Pt~~~f 83 (113)
T cd02957 9 ISSKE-FLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYP-ETKFVKINAEKA---FLVNYLDIKVLPTLLVY 83 (113)
T ss_pred EcHHH-HHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCC-CcEEEEEEchhh---HHHHhcCCCcCCEEEEE
Confidence 45533 3444433221235544 55543 2 224677788888875 467777764432 79999999999999999
Q ss_pred cCCCc
Q 014549 338 KDPGV 342 (423)
Q Consensus 338 k~~~~ 342 (423)
+++..
T Consensus 84 ~~G~~ 88 (113)
T cd02957 84 KNGEL 88 (113)
T ss_pred ECCEE
Confidence 98643
No 262
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=96.72 E-value=0.01 Score=53.65 Aligned_cols=41 Identities=12% Similarity=-0.103 Sum_probs=35.8
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~ 194 (423)
++++||.|+|.||+.|++ .|.++++.+++++. +.|..+.|.
T Consensus 25 GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 25 GNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred CCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 589999999999999976 77999999998765 688899995
No 263
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=96.66 E-value=0.0092 Score=47.70 Aligned_cols=81 Identities=15% Similarity=0.202 Sum_probs=53.9
Q ss_pred CceEEEEEe-cCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCCh
Q 014549 278 HKVKVIFFS-KTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNN 353 (423)
Q Consensus 278 ~~~~vl~f~-~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~ 353 (423)
+++++++|. +.+ .| ..+.+..++.++.+.+.+..++.. +.+++++++++.+.|++++|+++ .....+.|..+.
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d--~~~~l~~~~~v~~vPt~~i~~~g-~~v~~~~g~~~~ 89 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDID--EDQEIAEAAGIMGTPTVQFFKDK-ELVKEISGVKMK 89 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECC--CCHHHHHHCCCeeccEEEEEECC-eEEEEEeCCccH
Confidence 345555544 322 22 345566677777655666666532 24689999999999999999854 444456788888
Q ss_pred hHHHHHHH
Q 014549 354 SRLSEVME 361 (423)
Q Consensus 354 ~~l~~fi~ 361 (423)
+.|.+|++
T Consensus 90 ~~~~~~l~ 97 (97)
T cd02949 90 SEYREFIE 97 (97)
T ss_pred HHHHHhhC
Confidence 88888874
No 264
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=96.65 E-value=0.016 Score=47.94 Aligned_cols=80 Identities=20% Similarity=0.295 Sum_probs=55.6
Q ss_pred eEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc-ceeEecCCCChh
Q 014549 280 VKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV-KPVVYYGSFNNS 354 (423)
Q Consensus 280 ~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~-~~~~y~g~~~~~ 354 (423)
.++++|. + +..| ..+.+..++..+ +.+.|..+... +.++++++|+|.+.||+++|++++. ..+.|.|..+..
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~-~~i~~~~vd~d--~~~~l~~~~~v~~vPt~~i~~~g~~~~~~~~~G~~~~~ 100 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELS-DKLKLEIYDFD--EDKEKAEKYGVERVPTTIFLQDGGKDGGIRYYGLPAGY 100 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhc-CceEEEEEeCC--cCHHHHHHcCCCcCCEEEEEeCCeecceEEEEecCchH
Confidence 4555553 3 2233 356677777665 55677777643 2478999999999999999987543 334678877788
Q ss_pred HHHHHHHh
Q 014549 355 RLSEVMEQ 362 (423)
Q Consensus 355 ~l~~fi~~ 362 (423)
.+.+||..
T Consensus 101 el~~~i~~ 108 (113)
T cd02975 101 EFASLIED 108 (113)
T ss_pred HHHHHHHH
Confidence 88888876
No 265
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=96.64 E-value=0.0041 Score=53.47 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=39.3
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
+..+++.|++.||+.|+...|.+.++.+++... +.+..|+.+........+++.+
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~~ 79 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGKF 79 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhcC
Confidence 344445555999999999999999999998654 7888888774433333455544
No 266
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=96.64 E-value=0.0058 Score=50.65 Aligned_cols=63 Identities=19% Similarity=0.201 Sum_probs=46.4
Q ss_pred CceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCc
Q 014549 278 HKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 278 ~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~ 342 (423)
++++|+ |+++. ++| ..|.+..+|.+|.+.+.|..|.+.+ .++++++|+|.+.||+++|+++..
T Consensus 14 ~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~--~~~la~~~~V~~iPTf~~fk~G~~ 80 (114)
T cd02954 14 EKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDE--VPDFNKMYELYDPPTVMFFFRNKH 80 (114)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCC--CHHHHHHcCCCCCCEEEEEECCEE
Confidence 345555 54442 233 4688888999988777888887543 378999999999999999997654
No 267
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=96.64 E-value=0.0056 Score=52.56 Aligned_cols=54 Identities=13% Similarity=0.065 Sum_probs=41.6
Q ss_pred CCcEEEEEecCC-CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVYSDG-SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FYapw-C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
++++++.||+.| |++|+.-.|.+.++.+++. .+.|..|+.+......+..++++
T Consensus 26 gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~-~~~vi~Is~d~~~~~~~~~~~~~ 80 (143)
T cd03014 26 GKVKVISVFPSIDTPVCATQTKRFNKEAAKLD-NTVVLTISADLPFAQKRWCGAEG 80 (143)
T ss_pred CCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcC-CCEEEEEECCCHHHHHHHHHhcC
Confidence 578999999998 6999999999999999986 46788888774333344455555
No 268
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=96.63 E-value=0.0041 Score=48.60 Aligned_cols=80 Identities=8% Similarity=0.052 Sum_probs=53.5
Q ss_pred EEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcc
Q 014549 156 WLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMT 234 (423)
Q Consensus 156 ~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~ 234 (423)
-++.|+.|||++|++....+++++.++ ..+.+..+|.+++. ...++.+..+.+ +..+|+|. .+|..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~-~~i~~~~idi~~~~~~~~el~~~~~~~----~~~vP~if--i~g~~------ 68 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEER-DDFDYRYVDIHAEGISKADLEKTVGKP----VETVPQIF--VDQKH------ 68 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccc-cCCcEEEEECCCChHHHHHHHHHHCCC----CCcCCEEE--ECCEE------
Confidence 367899999999999999999988765 34577788877432 122344444422 57899975 45533
Q ss_pred cccCCCCHHHHHHHHHHh
Q 014549 235 RFEGELSVDAVTDWFATA 252 (423)
Q Consensus 235 ~y~G~~~~~~l~~fi~~~ 252 (423)
-| ..++|.+++...
T Consensus 69 --ig--g~~~~~~~~~~~ 82 (85)
T PRK11200 69 --IG--GCTDFEAYVKEN 82 (85)
T ss_pred --Ec--CHHHHHHHHHHh
Confidence 23 246788777655
No 269
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=96.61 E-value=0.0057 Score=45.40 Aligned_cols=54 Identities=11% Similarity=0.029 Sum_probs=36.9
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++.|+++||++|.++.+.+++. .+.+..+|.+.+.. ...+.+..+ +.++|+|.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~------~i~~~~~~i~~~~~~~~~~~~~~~------~~~vP~i~~ 56 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER------GIPFEEVDVDEDPEALEELKKLNG------YRSVPVVVI 56 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC------CCCeEEEeCCCCHHHHHHHHHHcC------CcccCEEEE
Confidence 5788999999999988777652 25667778774332 223333335 779999976
No 270
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.61 E-value=0.011 Score=52.92 Aligned_cols=97 Identities=12% Similarity=0.155 Sum_probs=60.5
Q ss_pred ccc-chhhhhhhhhcCCCceEEE-EEecC-CCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549 262 YTK-ESMGKNFLAKTGPHKVKVI-FFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (423)
Q Consensus 262 it~-~~~~~~fl~~~~~~~~~vl-~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l 336 (423)
+++ .++ .+.+...+...++|+ |+.+. ..| ..+.+..+|.+|. .+.|..|....+ .++.+|+|...||+++
T Consensus 67 i~~~~~f-~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~-~vkF~kVd~d~~---~l~~~f~v~~vPTlll 141 (175)
T cd02987 67 LDSGEQF-LDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYP-AVKFCKIRASAT---GASDEFDTDALPALLV 141 (175)
T ss_pred cCCHHHH-HHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCC-CeEEEEEeccch---hhHHhCCCCCCCEEEE
Confidence 555 443 333332222335555 44442 223 3577788888874 578888875543 6899999999999999
Q ss_pred ecCCCcceeE--e----cCCCChhHHHHHHHhh
Q 014549 337 LKDPGVKPVV--Y----YGSFNNSRLSEVMEQN 363 (423)
Q Consensus 337 fk~~~~~~~~--y----~g~~~~~~l~~fi~~~ 363 (423)
|+++...... + .+.++.++|..|+.++
T Consensus 142 yk~G~~v~~~vG~~~~~g~~f~~~~le~~L~~~ 174 (175)
T cd02987 142 YKGGELIGNFVRVTEDLGEDFDAEDLESFLVEY 174 (175)
T ss_pred EECCEEEEEEechHHhcCCCCCHHHHHHHHHhc
Confidence 9986533211 1 1256778888888763
No 271
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=96.56 E-value=0.016 Score=52.55 Aligned_cols=42 Identities=17% Similarity=0.116 Sum_probs=35.6
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcc
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELG 194 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~ 194 (423)
+++++|.|| +.||+.|..-.|.+.++.+++++. +.+..|.++
T Consensus 31 Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D 74 (187)
T TIGR03137 31 GKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTD 74 (187)
T ss_pred CCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCC
Confidence 568999999 999999999999999999998754 567777765
No 272
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=96.47 E-value=0.0024 Score=56.88 Aligned_cols=76 Identities=17% Similarity=0.187 Sum_probs=64.3
Q ss_pred cCCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 143 SEDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 143 ~~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
..+|-+.+....-+++.||-|.-..|+-|-...+.+|+..-+ -+|.+||+. ..+=|+.+++ |+-.|++.+
T Consensus 74 Ekdf~~~~~kS~kVVcHFY~~~f~RCKimDkhLe~LAk~h~e-TrFikvnae---~~PFlv~kL~------IkVLP~v~l 143 (211)
T KOG1672|consen 74 EKDFFEEVKKSEKVVCHFYRPEFFRCKIMDKHLEILAKRHVE-TRFIKVNAE---KAPFLVTKLN------IKVLPTVAL 143 (211)
T ss_pred HHHHHHHhhcCceEEEEEEcCCCcceehHHHHHHHHHHhccc-ceEEEEecc---cCceeeeeee------eeEeeeEEE
Confidence 456767776777789999999999999999999999986432 489999998 4455899999 999999999
Q ss_pred eCCCCC
Q 014549 223 FPPGCK 228 (423)
Q Consensus 223 f~~g~~ 228 (423)
|.+|..
T Consensus 144 ~k~g~~ 149 (211)
T KOG1672|consen 144 FKNGKT 149 (211)
T ss_pred EEcCEE
Confidence 999976
No 273
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=96.36 E-value=0.008 Score=49.10 Aligned_cols=82 Identities=16% Similarity=0.135 Sum_probs=62.0
Q ss_pred eeEeccCCcccccCCCCcEEEEEecCC--CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCcccccc
Q 014549 138 FNVVTSEDFPSIFHDSKPWLIQVYSDG--SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRR 215 (423)
Q Consensus 138 v~~L~~~nf~~~v~~~~~~lV~FYapw--C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~ 215 (423)
...++.++++..+......++.|..+. ++.|...+=+.-|+.+.+.+....+.|.-. .+..|..+|| +.
T Consensus 11 ~~~vd~~~ld~~l~~~~~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~---~e~~L~~r~g------v~ 81 (107)
T PF07449_consen 11 WPRVDADTLDAFLAAPGDAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARA---AERALAARFG------VR 81 (107)
T ss_dssp EEEE-CCCHHHHHHCCSCEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHH---HHHHHHHHHT-------T
T ss_pred CeeechhhHHHHHhCCCcEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEECch---hHHHHHHHhC------Cc
Confidence 466888899999977777766666542 566666666778888888888888888855 5567999999 99
Q ss_pred CccEEEEeCCCCC
Q 014549 216 GLPSLVAFPPGCK 228 (423)
Q Consensus 216 ~~Pti~~f~~g~~ 228 (423)
.+|++++|++|..
T Consensus 82 ~~PaLvf~R~g~~ 94 (107)
T PF07449_consen 82 RWPALVFFRDGRY 94 (107)
T ss_dssp SSSEEEEEETTEE
T ss_pred cCCeEEEEECCEE
Confidence 9999999999854
No 274
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=96.34 E-value=0.0096 Score=51.34 Aligned_cols=55 Identities=16% Similarity=0.097 Sum_probs=41.0
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
.++++|.|| +.||+.|..-.|.+.++.+++.. .+.+..|+.+.........++++
T Consensus 28 ~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~ 84 (149)
T cd03018 28 RKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENG 84 (149)
T ss_pred CCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcC
Confidence 367777777 89999999999999999999875 36788888764333344455554
No 275
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=96.31 E-value=0.0076 Score=55.00 Aligned_cols=85 Identities=12% Similarity=0.132 Sum_probs=53.7
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHH--------------------------------hhcc---ceE--EEEEc
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL--------------------------------LEGI---ANT--GMVEL 193 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~--------------------------------l~~~---~~~--~~Vdc 193 (423)
.+.+..++.|..|.|++|+++.+...+.... +... ... ..-.|
T Consensus 75 ~~~~~~i~~f~D~~Cp~C~~~~~~l~~~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~~ 154 (197)
T cd03020 75 GNGKRVVYVFTDPDCPYCRKLEKELKPNADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAASC 154 (197)
T ss_pred CCCCEEEEEEECCCCccHHHHHHHHhhccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCcccc
Confidence 3468899999999999999999887741000 0000 000 01123
Q ss_pred c-cchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 194 G-DIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 194 ~-~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
. .-..+..+++++| |++.|+|+ |.+|. .+.|..+.+.|.+|+
T Consensus 155 ~~~i~~~~~l~~~~g------i~gtPtii-~~~G~-------~~~G~~~~~~l~~~L 197 (197)
T cd03020 155 DNPVAANLALGRQLG------VNGTPTIV-LADGR-------VVPGAPPAAQLEALL 197 (197)
T ss_pred CchHHHHHHHHHHcC------CCcccEEE-ECCCe-------EecCCCCHHHHHhhC
Confidence 2 1113456788888 99999997 77664 356888888887663
No 276
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=96.31 E-value=0.0095 Score=50.86 Aligned_cols=43 Identities=12% Similarity=0.043 Sum_probs=37.4
Q ss_pred CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhcc----ceEEEEEcc
Q 014549 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEGI----ANTGMVELG 194 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~~----~~~~~Vdc~ 194 (423)
.+++++|.||++||+. |.+..+.+.++.++++.. +.+..|+++
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d 68 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVD 68 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEEC
Confidence 4678999999999997 999999999999998753 788888876
No 277
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=96.28 E-value=0.015 Score=54.57 Aligned_cols=88 Identities=15% Similarity=0.166 Sum_probs=59.5
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHH-h---------hc------------------------c---ceEEEEEc
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAAL-L---------EG------------------------I---ANTGMVEL 193 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~-l---------~~------------------------~---~~~~~Vdc 193 (423)
.+.+..++.|..|.|++|+++.++++++.+. . .| . ..+..-.|
T Consensus 105 ~~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~c 184 (232)
T PRK10877 105 PQEKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPASC 184 (232)
T ss_pred CCCCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCcccc
Confidence 4467789999999999999999888775320 0 00 0 00111134
Q ss_pred cc-chhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 194 GD-IRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 194 ~~-~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
.. -..+..+++++| |++.||++ |.+|. ...|..+.+.|.+++.+.
T Consensus 185 ~~~v~~~~~la~~lg------i~gTPtiv-~~~G~-------~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 185 DVDIADHYALGVQFG------VQGTPAIV-LSNGT-------LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred cchHHHhHHHHHHcC------CccccEEE-EcCCe-------EeeCCCCHHHHHHHHHHc
Confidence 21 123455788888 99999998 66764 457999999999998754
No 278
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=96.26 E-value=0.03 Score=48.26 Aligned_cols=83 Identities=12% Similarity=0.178 Sum_probs=53.5
Q ss_pred CceEEE-EEecC-C--CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEE-EecCCCcceeEecC---
Q 014549 278 HKVKVI-FFSKT-G--ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIV-FLKDPGVKPVVYYG--- 349 (423)
Q Consensus 278 ~~~~vl-~f~~~-~--~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~-lfk~~~~~~~~y~g--- 349 (423)
++++|+ |+.+. + ....|.+..+|.++.+.+.|..|.+.+ .+++++.|+|.+.|+++ +||++...--...|
T Consensus 23 ~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe--~~dla~~y~I~~~~t~~~ffk~g~~~vd~~tG~~~ 100 (142)
T PLN00410 23 ERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITE--VPDFNTMYELYDPCTVMFFFRNKHIMIDLGTGNNN 100 (142)
T ss_pred CCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCC--CHHHHHHcCccCCCcEEEEEECCeEEEEEeccccc
Confidence 445555 55542 2 234688888999887777777776443 37899999999766555 88876433222345
Q ss_pred -----CCChhHHHHHHHh
Q 014549 350 -----SFNNSRLSEVMEQ 362 (423)
Q Consensus 350 -----~~~~~~l~~fi~~ 362 (423)
..+.++|.+-++.
T Consensus 101 k~~~~~~~k~~l~~~i~~ 118 (142)
T PLN00410 101 KINWALKDKQEFIDIVET 118 (142)
T ss_pred ccccccCCHHHHHHHHHH
Confidence 2455667666665
No 279
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.19 E-value=0.027 Score=48.66 Aligned_cols=91 Identities=20% Similarity=0.269 Sum_probs=62.4
Q ss_pred cccCCCCcEEEEEecCCCccccccHHHHH---HHHHHhhccceEEEEEccc-------------chhhhHHHhhCCCCcc
Q 014549 148 SIFHDSKPWLIQVYSDGSYLCGQFSGAWK---TIAALLEGIANTGMVELGD-------------IRLATHLAERKPIGQI 211 (423)
Q Consensus 148 ~~v~~~~~~lV~FYapwC~~C~~~~p~~~---~~A~~l~~~~~~~~Vdc~~-------------~~~~~~l~~~~~~~~~ 211 (423)
++...++..+++|=++.|..|.+|..... ++-+.+.+.+.+..+|... --...+|++.++
T Consensus 37 si~~~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~---- 112 (182)
T COG2143 37 SISPNDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFA---- 112 (182)
T ss_pred hcCccCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhc----
Confidence 34467889999999999999999886443 3334455544444444321 112457999999
Q ss_pred ccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHH
Q 014549 212 FFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTD 247 (423)
Q Consensus 212 ~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~ 247 (423)
|++.||+++|...+.. .-...|-...++++.
T Consensus 113 --vrstPtfvFfdk~Gk~---Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 113 --VRSTPTFVFFDKTGKT---ILELPGYMPPEQFLA 143 (182)
T ss_pred --cccCceEEEEcCCCCE---EEecCCCCCHHHHHH
Confidence 9999999999876543 233458888777654
No 280
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=96.11 E-value=0.046 Score=49.56 Aligned_cols=93 Identities=12% Similarity=0.055 Sum_probs=61.6
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh----------------------hhHHHhhCCC
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL----------------------ATHLAERKPI 208 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~----------------------~~~l~~~~~~ 208 (423)
++++++.|| +.||+.|..-.+.+.+..++++.. +.+..|+++.... ...+++.||
T Consensus 31 Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~~yg- 109 (187)
T PRK10382 31 GRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTRNFD- 109 (187)
T ss_pred CCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHHHcC-
Confidence 457889999 999999999999999999998654 5666666653222 124555555
Q ss_pred Cccccc----cCc--cEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 209 GQIFFR----RGL--PSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 209 ~~~~~i----~~~--Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
+ .+. |+..++-++... -....+ ...++.+++.+.+...
T Consensus 110 -----v~~~~~g~~~r~tfIID~~G~I-~~~~~~~~~~~~~~~eil~~l~al 155 (187)
T PRK10382 110 -----NMREDEGLADRATFVVDPQGII-QAIEVTAEGIGRDASDLLRKIKAA 155 (187)
T ss_pred -----CCcccCCceeeEEEEECCCCEE-EEEEEeCCCCCCCHHHHHHHHHhh
Confidence 4 355 888888644431 001112 2356889998888543
No 281
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=96.10 E-value=0.019 Score=48.85 Aligned_cols=55 Identities=18% Similarity=0.107 Sum_probs=41.5
Q ss_pred CCCcEEEEEe-cCCCccccccHHHHHHHHHHhhc-cceEEEEEcccchhhhHHHhhC
Q 014549 152 DSKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEG-IANTGMVELGDIRLATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~-~~~~~~Vdc~~~~~~~~l~~~~ 206 (423)
.+++++|.|| +.||+.|....|.+.++.+.++. .+.|..|..+........+++.
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 4788899999 78999999999999999999854 4688888876333333344444
No 282
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=96.02 E-value=0.055 Score=42.78 Aligned_cols=77 Identities=14% Similarity=0.247 Sum_probs=46.4
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|.|+.+.+ ....+.+..++..+...+.+..+.. .+..+++++|++.+.||+++|+++ ..-..+.| .+.+.|
T Consensus 17 v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~--~~~~~~~~~~~i~~~Pt~~~~~~g-~~~~~~~g-~~~~~l 92 (97)
T cd02984 17 LVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEA--EELPEISEKFEITAVPTFVFFRNG-TIVDRVSG-ADPKEL 92 (97)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEcc--ccCHHHHHhcCCccccEEEEEECC-EEEEEEeC-CCHHHH
Confidence 3444555432 2234556667766544555655532 224779999999999999999854 22223345 355666
Q ss_pred HHHH
Q 014549 357 SEVM 360 (423)
Q Consensus 357 ~~fi 360 (423)
.+.|
T Consensus 93 ~~~~ 96 (97)
T cd02984 93 AKKV 96 (97)
T ss_pred HHhh
Confidence 6655
No 283
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=96.00 E-value=0.011 Score=42.74 Aligned_cols=54 Identities=13% Similarity=0.105 Sum_probs=38.5
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++.|..+||++|++....+++. .+.+-.+|.++++. ...+.+..+ ..++|++.+
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~------~i~y~~~dv~~~~~~~~~l~~~~g------~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK------GIPYEEVDVDEDEEAREELKELSG------VRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT------TBEEEEEEGGGSHHHHHHHHHHHS------SSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc------CCeeeEcccccchhHHHHHHHHcC------CCccCEEEE
Confidence 4678999999999888766322 26788899886533 333444446 889999875
No 284
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.99 E-value=0.01 Score=45.59 Aligned_cols=58 Identities=14% Similarity=0.157 Sum_probs=38.1
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-h-hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-L-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
++.|+++||++|+.+.+.++++.. ...+..++...+. . ...+.+..| +.++|++ |.+|
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~----~~~~~~v~~~~~~~~~~~~~~~~~g------~~~~P~v--~~~g 61 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV----KPAVVELDQHEDGSEIQDYLQELTG------QRTVPNV--FIGG 61 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC----CcEEEEEeCCCChHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 578999999999999998887654 2344555544321 1 123445556 7799996 4555
No 285
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=95.98 E-value=0.028 Score=59.18 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=64.8
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
...-+-.|++|.|++|......+.++|..- +.+..-.+|+. .+++++++|+ |.++|++.+ ++..
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~~~~id~~---~~~~~~~~~~------v~~VP~~~i--~~~~---- 180 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLN-PNISHTMIDGA---LFQDEVEALG------IQGVPAVFL--NGEE---- 180 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCceEEEEEch---hCHHHHHhcC------CcccCEEEE--CCcE----
Confidence 445688899999999998888888887763 35677778888 6677999999 999999875 5533
Q ss_pred cccccCCCCHHHHHHHHHHh
Q 014549 233 MTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~~~ 252 (423)
.+.|..+.+++++.+.+.
T Consensus 181 --~~~g~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 181 --FHNGRMDLAELLEKLEET 198 (515)
T ss_pred --EEecCCCHHHHHHHHhhc
Confidence 688989988888777543
No 286
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=95.95 E-value=0.0084 Score=51.49 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=52.5
Q ss_pred CCccccccccccc--CCCCHHHHHHHHHHHHHhcCCCCCC--------ChHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 34 SFPPSHYDALGIK--PYSSVEQVKEAYEKFSSKWNSGEEI--------PSTADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 34 ~~~~d~y~~lg~~--~~a~~~~ik~ayr~l~~~~hPd~~~--------~~~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
+...+||.++|.. ...+..-++.-|.-.+++.|||+.. -+.+.-.+|++||.+|.||-.|..|=.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yil 79 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLL 79 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 3356899999864 4556666777899999999999742 256679999999999999999999974
No 287
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.95 E-value=0.013 Score=43.11 Aligned_cols=53 Identities=8% Similarity=0.112 Sum_probs=37.5
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
++.|+++||++|+...+.+++.. +.+-.+|...+.. ...+.+..+ ...+|++.
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~~------i~~~~~di~~~~~~~~~l~~~~~------~~~~P~~~ 55 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESLG------IEFEEIDILEDGELREELKELSG------WPTVPQIF 55 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC------CcEEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 46788999999999988877554 5677888875442 334445555 56888774
No 288
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=95.94 E-value=0.047 Score=41.87 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=45.7
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHH
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVME 361 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~ 361 (423)
.+.+..++.. ...+.++.+.... ...+++.|++.+.|++++|+++. ....+.|..+.+.|.+||+
T Consensus 29 ~~~~~~~~~~-~~~~~~~~i~~~~--~~~~~~~~~v~~~P~~~~~~~g~-~~~~~~g~~~~~~l~~~i~ 93 (93)
T cd02947 29 APVLEELAEE-YPKVKFVKVDVDE--NPELAEEYGVRSIPTFLFFKNGK-EVDRVVGADPKEELEEFLE 93 (93)
T ss_pred hHHHHHHHHH-CCCceEEEEECCC--ChhHHHhcCcccccEEEEEECCE-EEEEEecCCCHHHHHHHhC
Confidence 4555555555 4566777665332 36799999999999999998654 4455677777788888873
No 289
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=95.94 E-value=0.035 Score=46.47 Aligned_cols=43 Identities=16% Similarity=0.258 Sum_probs=35.2
Q ss_pred HHHHhhcCCCCCCeEEEecCC-CcceeEecCCCChhHHHHHHHh
Q 014549 320 SIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..++.+|+|.+.|++++|.++ +.....+.|..+.+.+..+|+.
T Consensus 74 ~~l~~~~~v~~~Pt~~~~~~~gg~~~~~~~G~~~~~~~~~~l~~ 117 (125)
T cd02951 74 KELARKYRVRFTPTVIFLDPEGGKEIARLPGYLPPDEFLAYLEY 117 (125)
T ss_pred HHHHHHcCCccccEEEEEcCCCCceeEEecCCCCHHHHHHHHHH
Confidence 678999999999999999876 4544566888888888888776
No 290
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=95.88 E-value=0.042 Score=45.41 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCceEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEe
Q 014549 277 PHKVKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVY 347 (423)
Q Consensus 277 ~~~~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y 347 (423)
..+++|+-|. + +++| ..|.+..+|.+|.+.+.|..|.+.+ .+++++.|+|..-||.++|+++..-.+.|
T Consensus 13 ~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDe--v~dva~~y~I~amPtfvffkngkh~~~d~ 85 (114)
T cd02986 13 AEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDK--VPVYTQYFDISYIPSTIFFFNGQHMKVDY 85 (114)
T ss_pred CCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccc--cHHHHHhcCceeCcEEEEEECCcEEEEec
Confidence 3567777665 3 2222 3577888999987667777776543 47899999999899999999877666665
No 291
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=95.86 E-value=0.015 Score=49.38 Aligned_cols=67 Identities=9% Similarity=0.033 Sum_probs=39.9
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
...-++-|..+|||.|.+.-|.+.++|+... .+.+--+.-+++ .++-.++- +.+....|+++++..+
T Consensus 41 ~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p-~i~~~~i~rd~~---~el~~~~l---t~g~~~IP~~I~~d~~ 107 (129)
T PF14595_consen 41 KPYNILVITETWCGDCARNVPVLAKIAEANP-NIEVRIILRDEN---KELMDQYL---TNGGRSIPTFIFLDKD 107 (129)
T ss_dssp S-EEEEEE--TT-HHHHHHHHHHHHHHHH-T-TEEEEEE-HHHH---HHHTTTTT---T-SS--SSEEEEE-TT
T ss_pred CCcEEEEEECCCchhHHHHHHHHHHHHHhCC-CCeEEEEEecCC---hhHHHHHH---hCCCeecCEEEEEcCC
Confidence 4456667899999999999999999999753 455555554533 33444441 0227899999999654
No 292
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=95.74 E-value=0.023 Score=44.35 Aligned_cols=37 Identities=8% Similarity=0.117 Sum_probs=29.3
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc 193 (423)
++.|+++.|++|..+.+..+++.....+.+.+-.+..
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~ 37 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPF 37 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEecc
Confidence 4689999999999999999999866666665555543
No 293
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=95.71 E-value=0.055 Score=47.34 Aligned_cols=78 Identities=17% Similarity=0.190 Sum_probs=49.0
Q ss_pred cccchhhhhhhhhcCCCceEEEEEecCC---CCCchHHHHHHHhccc-cceEEEEEccccccHHHHhhcCCCC------C
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSKTG---ERASPFVRQISRNYWA-YASFAFVLWREEESSIWWNTFEVES------A 331 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~---~~~~~~~~~~a~~~~~-~~~f~~v~~~~~~~~~l~~~f~v~~------~ 331 (423)
++.++ +++.+.......++|.|+++.+ ....|.+..++.++.+ .+.|+.|+... .++++++|+|.+ .
T Consensus 33 l~~~~-f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~--~~~la~~~~V~~~~~v~~~ 109 (152)
T cd02962 33 FTPKT-LEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGR--FPNVAEKFRVSTSPLSKQL 109 (152)
T ss_pred cCHHH-HHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCC--CHHHHHHcCceecCCcCCC
Confidence 44443 4444433222234555666532 3346777778887763 47777776432 378999999987 9
Q ss_pred CeEEEecCCCc
Q 014549 332 PAIVFLKDPGV 342 (423)
Q Consensus 332 Ptl~lfk~~~~ 342 (423)
||+++|+++..
T Consensus 110 PT~ilf~~Gk~ 120 (152)
T cd02962 110 PTIILFQGGKE 120 (152)
T ss_pred CEEEEEECCEE
Confidence 99999986543
No 294
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=95.58 E-value=0.095 Score=43.33 Aligned_cols=71 Identities=17% Similarity=0.209 Sum_probs=43.6
Q ss_pred eEEEEEecCC---CCCchHHHHHHHhccc---cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce---eEecCC
Q 014549 280 VKVIFFSKTG---ERASPFVRQISRNYWA---YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP---VVYYGS 350 (423)
Q Consensus 280 ~~vl~f~~~~---~~~~~~~~~~a~~~~~---~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~---~~y~g~ 350 (423)
++|.|+++.+ ....+.+..++..+++ .+.|+.++........++++|++.++|++++|+++.... ..|+|.
T Consensus 22 vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~lf~~~~~~~~~~~~~~~~ 101 (114)
T cd02992 22 WLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRYFPPFSKEATDGLKQEGP 101 (114)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEEECCCCccCCCCCcccCC
Confidence 4444555432 2235667777776653 355555542222236789999999999999998875332 345554
No 295
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=0.038 Score=45.85 Aligned_cols=74 Identities=12% Similarity=0.116 Sum_probs=63.5
Q ss_pred ccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549 146 FPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (423)
Q Consensus 146 f~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f 223 (423)
.++.| .+.+.++|-|=-+|.+.|.++-....++|+.++..+.+.-||.+ ..+++-+-|+ +...||+++|
T Consensus 14 VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~Iylvdid---eV~~~~~~~~------l~~p~tvmfF 84 (142)
T KOG3414|consen 14 VDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDID---EVPDFVKMYE------LYDPPTVMFF 84 (142)
T ss_pred HHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecc---hhhhhhhhhc------ccCCceEEEE
Confidence 34445 55788999999999999999999999999999999999999998 5566777787 8899999999
Q ss_pred CCCCC
Q 014549 224 PPGCK 228 (423)
Q Consensus 224 ~~g~~ 228 (423)
-+++.
T Consensus 85 fn~kH 89 (142)
T KOG3414|consen 85 FNNKH 89 (142)
T ss_pred EcCce
Confidence 88765
No 296
>PRK13190 putative peroxiredoxin; Provisional
Probab=95.44 E-value=0.1 Score=47.88 Aligned_cols=91 Identities=12% Similarity=0.047 Sum_probs=59.2
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh------------------------hhHHHhhCCCC
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL------------------------ATHLAERKPIG 209 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~------------------------~~~l~~~~~~~ 209 (423)
.+|+.|++.||+.|..-.+.+.++.++++.. +.+..|+++.... ...+++.||
T Consensus 30 vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~~yg-- 107 (202)
T PRK13190 30 VLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAREYN-- 107 (202)
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHHHcC--
Confidence 3444688999999999999999999888754 5677777663211 122333444
Q ss_pred cccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 210 QIFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 210 ~~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
+. .+|+..++-+++... ....| .+.|+.++++..+...
T Consensus 108 ----v~~~~~g~~~p~~fiId~~G~I~-~~~~~~~~~gr~~~ellr~l~~l 153 (202)
T PRK13190 108 ----LIDENSGATVRGVFIIDPNQIVR-WMIYYPAETGRNIDEIIRITKAL 153 (202)
T ss_pred ----CccccCCcEEeEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence 53 479988887554420 01112 3568999998888654
No 297
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.43 E-value=0.062 Score=48.94 Aligned_cols=94 Identities=10% Similarity=0.162 Sum_probs=57.9
Q ss_pred cccchhhhhhhhhcCCCceEEE-EEecC-CC--CCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEe
Q 014549 262 YTKESMGKNFLAKTGPHKVKVI-FFSKT-GE--RASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFL 337 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl-~f~~~-~~--~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lf 337 (423)
++..++...... .+.+.++|+ |+.+. .. ...+.+..+|.+|. .+.|+.+.+.. ....|++...||+++|
T Consensus 87 is~~~f~~eV~~-as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~-~vkFvkI~ad~-----~~~~~~i~~lPTlliy 159 (192)
T cd02988 87 ISKPDYVREVTE-ASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFP-DTKFVKIISTQ-----CIPNYPDKNLPTILVY 159 (192)
T ss_pred eCHHHHHHHHHh-cCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCC-CCEEEEEEhHH-----hHhhCCCCCCCEEEEE
Confidence 565554333332 222345555 55432 22 24677888998885 57888886433 3689999999999999
Q ss_pred cCCCcceeE--e---cC-CCChhHHHHHHHh
Q 014549 338 KDPGVKPVV--Y---YG-SFNNSRLSEVMEQ 362 (423)
Q Consensus 338 k~~~~~~~~--y---~g-~~~~~~l~~fi~~ 362 (423)
+++...... + -| .++.++|..++.+
T Consensus 160 k~G~~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 160 RNGDIVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred ECCEEEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 987543211 1 12 4667778777765
No 298
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=95.39 E-value=0.032 Score=49.17 Aligned_cols=75 Identities=15% Similarity=0.176 Sum_probs=47.4
Q ss_pred CcccccCCCCcEEEEEecCCCccccccHH-HH--HHHHHHhhccceEEEEEcccchhhhHHHhhC--------CCCcccc
Q 014549 145 DFPSIFHDSKPWLIQVYSDGSYLCGQFSG-AW--KTIAALLEGIANTGMVELGDIRLATHLAERK--------PIGQIFF 213 (423)
Q Consensus 145 nf~~~v~~~~~~lV~FYapwC~~C~~~~p-~~--~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~--------~~~~~~~ 213 (423)
-|+..-..++++||.++.+||+.|+.|.. .| .++|+.+.....-.+||-++. +++.+.| |
T Consensus 29 a~~~Ak~e~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~---Pdid~~y~~~~~~~~~------ 99 (163)
T PF03190_consen 29 ALEKAKKENKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREER---PDIDKIYMNAVQAMSG------ 99 (163)
T ss_dssp HHHHHHHHT--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT----HHHHHHHHHHHHHHHS------
T ss_pred HHHHHHhcCCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccC---ccHHHHHHHHHHHhcC------
Confidence 34444477999999999999999999885 44 357788877766678887743 4455555 5
Q ss_pred ccCccEEEEeCCCCC
Q 014549 214 RRGLPSLVAFPPGCK 228 (423)
Q Consensus 214 i~~~Pti~~f~~g~~ 228 (423)
..|+|+.++..+...
T Consensus 100 ~gGwPl~vfltPdg~ 114 (163)
T PF03190_consen 100 SGGWPLTVFLTPDGK 114 (163)
T ss_dssp ---SSEEEEE-TTS-
T ss_pred CCCCCceEEECCCCC
Confidence 569999988877654
No 299
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=95.30 E-value=0.074 Score=43.21 Aligned_cols=92 Identities=16% Similarity=0.255 Sum_probs=65.2
Q ss_pred CCcccccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEe
Q 014549 144 EDFPSIFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAF 223 (423)
Q Consensus 144 ~nf~~~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f 223 (423)
++.++.+...++.+|-|+..--+ .....|.++|..+.....|+...-. . +.++++ + .|++++|
T Consensus 9 ~~l~~f~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~--~~~ivl~ 71 (104)
T cd03069 9 AEFEKFLSDDDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHTSDK---Q---LLEKYG------Y--GEGVVLF 71 (104)
T ss_pred HHHHHHhccCCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEEChH---H---HHHhcC------C--CCceEEE
Confidence 44566677788888888776433 4677999999999777788776644 2 667777 7 7889999
Q ss_pred CCCC---CCCCCcccccCCCCHHHHHHHHHHh
Q 014549 224 PPGC---KSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 224 ~~g~---~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
++.. +..+....|.|..+.+.|.+|+...
T Consensus 72 ~p~~~~~k~de~~~~y~g~~~~~~l~~fi~~~ 103 (104)
T cd03069 72 RPPRLSNKFEDSSVKFDGDLDSSKIKKFIREN 103 (104)
T ss_pred echhhhcccCcccccccCcCCHHHHHHHHHhh
Confidence 6531 0011234699998999999999754
No 300
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.28 E-value=0.038 Score=42.42 Aligned_cols=58 Identities=14% Similarity=0.166 Sum_probs=40.5
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
.-++.|..+||++|++....+++. .+.+-.+|.+++.....+.+..| ...+|++.+ +|
T Consensus 8 ~~V~ly~~~~Cp~C~~ak~~L~~~------gi~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i--~g 65 (79)
T TIGR02190 8 ESVVVFTKPGCPFCAKAKATLKEK------GYDFEEIPLGNDARGRSLRAVTG------ATTVPQVFI--GG 65 (79)
T ss_pred CCEEEEECCCCHhHHHHHHHHHHc------CCCcEEEECCCChHHHHHHHHHC------CCCcCeEEE--CC
Confidence 346788999999999988777532 25566788875544445655566 789999853 55
No 301
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=95.23 E-value=0.17 Score=46.18 Aligned_cols=93 Identities=11% Similarity=0.063 Sum_probs=60.2
Q ss_pred CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHhh
Q 014549 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAER 205 (423)
Q Consensus 153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~~ 205 (423)
++++++.||+ .||..|..-.+.+.+++++++.. +.|..|+++.... ..++++.
T Consensus 36 Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ia~~ 115 (199)
T PTZ00253 36 GKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKSIARS 115 (199)
T ss_pred CCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhHHHHH
Confidence 4678889995 78999999889999999998864 6788888773321 1235555
Q ss_pred CCCCcccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 206 KPIGQIFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 206 ~~~~~~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
|| +. .+|+..++-+...... ...+ .-.++.+++++.+...
T Consensus 116 yg------v~~~~~g~~~r~~fiID~~G~i~~-~~~~~~~~~r~~~e~l~~l~a~ 163 (199)
T PTZ00253 116 YG------VLEEEQGVAYRGLFIIDPKGMLRQ-ITVNDMPVGRNVEEVLRLLEAF 163 (199)
T ss_pred cC------CcccCCCceEEEEEEECCCCEEEE-EEecCCCCCCCHHHHHHHHHhh
Confidence 55 43 3678777775543100 0011 2356777777777543
No 302
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=0.01 Score=53.22 Aligned_cols=51 Identities=24% Similarity=0.346 Sum_probs=44.2
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC----------ChHHHHHHHHHHHHHc
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI----------PSTADFLKIQYAYELL 87 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~----------~~~~~f~~i~~Ay~~L 87 (423)
.|.|.+||+...+++.+|+++||++....|||+-. ...+++.++++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68999999999999999999999999999999632 2466788999998754
No 303
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=95.22 E-value=0.12 Score=41.69 Aligned_cols=95 Identities=8% Similarity=0.094 Sum_probs=67.3
Q ss_pred eEe-ccCCcccccC-CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccC
Q 014549 139 NVV-TSEDFPSIFH-DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRG 216 (423)
Q Consensus 139 ~~L-~~~nf~~~v~-~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~ 216 (423)
.++ +.++.+.++. +..+.+|=|+..--+ .....|.++|..+.....|+...-. . +.+.++ + .
T Consensus 3 ~~i~~~~~~e~~~~~~~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~~~~---~---~~~~~~------~-~ 66 (102)
T cd03066 3 EIINSERELQAFENIEDDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFATFDS---K---VAKKLG------L-K 66 (102)
T ss_pred eEcCCHHHHHHHhcccCCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEEECcH---H---HHHHcC------C-C
Confidence 345 3445777787 788888877766433 4567899999999877788776544 2 566665 4 4
Q ss_pred ccEEEEeCCCCCCCCCcccc-cCCCCHHHHHHHHHHh
Q 014549 217 LPSLVAFPPGCKSSDCMTRF-EGELSVDAVTDWFATA 252 (423)
Q Consensus 217 ~Pti~~f~~g~~~~~~~~~y-~G~~~~~~l~~fi~~~ 252 (423)
.|++.++++.... ...| .|..+.+.|.+|+...
T Consensus 67 ~~~i~l~~~~~e~---~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 67 MNEVDFYEPFMEE---PVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred CCcEEEeCCCCCC---CcccCCCCCCHHHHHHHHHHh
Confidence 6999999773221 3469 7888999999999754
No 304
>PRK15000 peroxidase; Provisional
Probab=95.20 E-value=0.15 Score=46.78 Aligned_cols=100 Identities=8% Similarity=0.004 Sum_probs=62.6
Q ss_pred CCCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHh----hCCC---C------------c
Q 014549 152 DSKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAE----RKPI---G------------Q 210 (423)
Q Consensus 152 ~~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~----~~~~---~------------~ 210 (423)
.++++++.||+ .||+.|..-.+.+.+.+++++.. +.+..|.++........++ +.++ . .
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 46789999999 59999999999999999999754 5777787773322211111 1111 0 2
Q ss_pred ccccc------CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 211 IFFRR------GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 211 ~~~i~------~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
.+++. ..|+..++-+..... ....+ .-.|+.+++++.+...
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G~I~-~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANGIVR-HQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCCEEE-EEEecCCCCCCCHHHHHHHHHHh
Confidence 23455 578888887544320 00111 1256888888887543
No 305
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=95.19 E-value=0.033 Score=43.65 Aligned_cols=79 Identities=8% Similarity=0.011 Sum_probs=49.3
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTR 235 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~ 235 (423)
++.|..|||++|++....++++..+.. .+.+-.+|...+. ...++.+..+.. +..+|+|. .+|.
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~-~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~if--i~g~-------- 66 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERA-DFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIF--VDEK-------- 66 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccC-CCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEE--ECCE--------
Confidence 577889999999998877776654322 2456677766322 123355555521 46899984 4553
Q ss_pred ccCCCCHHHHHHHHHHh
Q 014549 236 FEGELSVDAVTDWFATA 252 (423)
Q Consensus 236 y~G~~~~~~l~~fi~~~ 252 (423)
+-|. .++|.+++.+.
T Consensus 67 ~igG--~~dl~~~~~~~ 81 (86)
T TIGR02183 67 HVGG--CTDFEQLVKEN 81 (86)
T ss_pred EecC--HHHHHHHHHhc
Confidence 2233 47788887765
No 306
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=95.11 E-value=0.12 Score=47.32 Aligned_cols=41 Identities=15% Similarity=0.105 Sum_probs=34.5
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~ 195 (423)
.+|+.|+++||+.|..-.+.+.+++++++.. +.+..|+++.
T Consensus 28 vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~ 69 (203)
T cd03016 28 GILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDS 69 (203)
T ss_pred EEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4566888999999999999999999999765 6788888774
No 307
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=94.99 E-value=0.17 Score=42.47 Aligned_cols=79 Identities=16% Similarity=0.252 Sum_probs=49.7
Q ss_pred eEEEEEe-c-C--CCCCchHHHHHHHhccccceEEEEEccccc-----c----HHHHhhcCCC----CCCeEEEecCCCc
Q 014549 280 VKVIFFS-K-T--GERASPFVRQISRNYWAYASFAFVLWREEE-----S----SIWWNTFEVE----SAPAIVFLKDPGV 342 (423)
Q Consensus 280 ~~vl~f~-~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~-----~----~~l~~~f~v~----~~Ptl~lfk~~~~ 342 (423)
..+++|. + + |....|.+..++.+. ...+..|++.... + .++.++|++. +.||+++|+++..
T Consensus 25 ~~iv~f~~~~Cp~C~~~~P~l~~~~~~~--~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~i~~~PT~v~~k~Gk~ 102 (122)
T TIGR01295 25 TATFFIGRKTCPYCRKFSGTLSGVVAQT--KAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTSFMGTPTFVHITDGKQ 102 (122)
T ss_pred cEEEEEECCCChhHHHHhHHHHHHHHhc--CCcEEEEECCCccCcCcccHHHHHHHHHHcCCcccCCCCCEEEEEeCCeE
Confidence 5555554 3 2 234578888887763 4567777654221 1 2566777654 4999999998754
Q ss_pred ceeEecC-CCChhHHHHHHH
Q 014549 343 KPVVYYG-SFNNSRLSEVME 361 (423)
Q Consensus 343 ~~~~y~g-~~~~~~l~~fi~ 361 (423)
... ..| ..+.++|.+|+.
T Consensus 103 v~~-~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 103 VSV-RCGSSTTAQELQDIAA 121 (122)
T ss_pred EEE-EeCCCCCHHHHHHHhh
Confidence 433 356 556888888864
No 308
>PRK10329 glutaredoxin-like protein; Provisional
Probab=94.95 E-value=0.064 Score=41.55 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=48.1
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y 236 (423)
++.|..+||++|++....+++ ..+.+-.+|.++++...+..+..| ...+|++++ ++. ..
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~------~gI~~~~idi~~~~~~~~~~~~~g------~~~vPvv~i--~~~-------~~ 61 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES------RGFDFEMINVDRVPEAAETLRAQG------FRQLPVVIA--GDL-------SW 61 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CCCcCEEEE--CCE-------EE
Confidence 456788999999987766643 236778888886554444444456 779999865 332 22
Q ss_pred cCCCCHHHHHHHHHHh
Q 014549 237 EGELSVDAVTDWFATA 252 (423)
Q Consensus 237 ~G~~~~~~l~~fi~~~ 252 (423)
+....+.|.+.+...
T Consensus 62 -~Gf~~~~l~~~~~~~ 76 (81)
T PRK10329 62 -SGFRPDMINRLHPAP 76 (81)
T ss_pred -ecCCHHHHHHHHHhh
Confidence 244577777776543
No 309
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=94.91 E-value=0.97 Score=47.62 Aligned_cols=174 Identities=11% Similarity=0.035 Sum_probs=98.1
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
.+++-+.++.+.|..|..+....++++..- +.+++-..+ . -...|++.+..+|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~~i~~~~~~-----~---------------~~~~p~~~~~~~~~~~--- 73 (517)
T PRK15317 18 ERPIELVASLDDSEKSAELKELLEEIASLS-DKITVEEDS-----L---------------DVRKPSFSITRPGEDT--- 73 (517)
T ss_pred CCCEEEEEEeCCCchHHHHHHHHHHHHHhC-CceEEEEcc-----C---------------CCCCCEEEEEcCCccc---
Confidence 444545555557999999888888887654 333332111 0 1147999998766543
Q ss_pred cccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEec-CCCCCc--hHHHHHHHhccccce
Q 014549 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TGERAS--PFVRQISRNYWAYAS 308 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~~~~~--~~~~~~a~~~~~~~~ 308 (423)
...|.|-..-.++-.|+...+. ..+... ++ ++ ..+.+..-+...-+-+|.+. +.-|+. ..+..+|.. ...+.
T Consensus 74 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~-~~-~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~-~~~i~ 149 (517)
T PRK15317 74 GVRFAGIPMGHEFTSLVLALLQVGGHPPK-LD-QE-VIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVL-NPNIT 149 (517)
T ss_pred eEEEEecCccHHHHHHHHHHHHhcCCCCC-CC-HH-HHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHh-CCCce
Confidence 5789987777777777765421 112211 22 22 12333332211123445553 334543 223334443 23444
Q ss_pred EEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 309 FAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 309 f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
+-.+ +.. -++++++|++.+.|++++ ++. ..+.|..+.+.|.+.+..
T Consensus 150 ~~~i---d~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~~~~ 196 (517)
T PRK15317 150 HTMI---DGALFQDEVEARNIMAVPTVFL---NGE--EFGQGRMTLEEILAKLDT 196 (517)
T ss_pred EEEE---EchhCHhHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhc
Confidence 3333 333 389999999999999976 222 346788887777777665
No 310
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=94.68 E-value=0.22 Score=37.89 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=45.4
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
.+.+..++..+...+.+..+... +.++++++|++.+.|++++ ++ . ..+.|..+.+.|.+++..
T Consensus 18 ~~~l~~l~~~~~~~~~~~~vd~~--~~~~~~~~~~v~~vPt~~~--~g-~--~~~~G~~~~~~l~~~l~~ 80 (82)
T TIGR00411 18 KRVVEEVAKEMGDAVEVEYINVM--ENPQKAMEYGIMAVPAIVI--NG-D--VEFIGAPTKEELVEAIKK 80 (82)
T ss_pred HHHHHHHHHHhcCceEEEEEeCc--cCHHHHHHcCCccCCEEEE--CC-E--EEEecCCCHHHHHHHHHh
Confidence 56666677777655666666532 3467899999999999986 33 2 356788888888888875
No 311
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=94.68 E-value=0.071 Score=54.87 Aligned_cols=39 Identities=23% Similarity=0.255 Sum_probs=31.9
Q ss_pred hhcCCCCcccccccccccCCCCHHHHHHHHHHHHHhcCCCCCC
Q 014549 29 VVLPRSFPPSHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEI 71 (423)
Q Consensus 29 ~~~~~~~~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~ 71 (423)
++++-|. |+-+++..=.+.+++|++|||..+..||||.+
T Consensus 384 VLW~es~----WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlq 422 (453)
T KOG0431|consen 384 VLWPESG----WQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQ 422 (453)
T ss_pred hhcCccC----cccCchhhccCHHHHHHHHHhhhheeCccccc
Confidence 4455444 67777777789999999999999999999976
No 312
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=94.63 E-value=0.31 Score=47.64 Aligned_cols=54 Identities=20% Similarity=0.207 Sum_probs=39.1
Q ss_pred cceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 306 YASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 306 ~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
.+.||.|.. .....+++++|+...++|.+|+++ ..+.|+|.++.+.|.+||..-
T Consensus 90 gigfg~VD~--~Kd~klAKKLgv~E~~SiyVfkd~--~~IEydG~~saDtLVeFl~dl 143 (383)
T PF01216_consen 90 GIGFGMVDS--KKDAKLAKKLGVEEEGSIYVFKDG--EVIEYDGERSADTLVEFLLDL 143 (383)
T ss_dssp TEEEEEEET--TTTHHHHHHHT--STTEEEEEETT--EEEEE-S--SHHHHHHHHHHH
T ss_pred CcceEEecc--HHHHHHHHhcCccccCcEEEEECC--cEEEecCccCHHHHHHHHHHh
Confidence 466666653 334789999999999999999864 567889999999999999883
No 313
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=94.62 E-value=0.041 Score=44.75 Aligned_cols=91 Identities=14% Similarity=0.143 Sum_probs=60.1
Q ss_pred cCCccccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCc-c
Q 014549 143 SEDFPSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGL-P 218 (423)
Q Consensus 143 ~~nf~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~-P 218 (423)
.+++++++ +.+++++|.=.+..|+-+......|++......+.+.++-+|.-++|. -..+++++| |+.= |
T Consensus 7 ~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~------V~HeSP 80 (105)
T PF11009_consen 7 EEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFG------VKHESP 80 (105)
T ss_dssp HHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----------SS
T ss_pred HHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhC------CCcCCC
Confidence 35677777 348888888889999999998889998888877768999999886654 334688888 7755 9
Q ss_pred EEEEeCCCCCCCCCccccc---CCCCHHHH
Q 014549 219 SLVAFPPGCKSSDCMTRFE---GELSVDAV 245 (423)
Q Consensus 219 ti~~f~~g~~~~~~~~~y~---G~~~~~~l 245 (423)
.++++++|+. .|. +..+.++|
T Consensus 81 Q~ili~~g~~------v~~aSH~~It~~~l 104 (105)
T PF11009_consen 81 QVILIKNGKV------VWHASHWDITAEAL 104 (105)
T ss_dssp EEEEEETTEE------EEEEEGGG-SHHHH
T ss_pred cEEEEECCEE------EEECccccCCHHhc
Confidence 9999999976 565 34555554
No 314
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.47 E-value=1.6 Score=45.94 Aligned_cols=175 Identities=12% Similarity=0.044 Sum_probs=94.2
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
.+++-+.++.+.|..|..+....++++..- +.+.+-..+- + ....|++.+..+|...
T Consensus 18 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s-~ki~~~~~~~-------------~------~~~~p~~~~~~~~~~~--- 74 (515)
T TIGR03140 18 ENPVTLVLSAGSHEKSKELLELLDEIASLS-DKISLTQNTA-------------D------TLRKPSFTILRDGADT--- 74 (515)
T ss_pred CCCEEEEEEeCCCchhHHHHHHHHHHHHhC-CCeEEEEecC-------------C------cCCCCeEEEecCCccc---
Confidence 344444444446899988887777777654 3344322111 1 2356999998776543
Q ss_pred cccccCCCCHHHHHHHHHHhhc-cCCceeecccchhhhhhhhhcCCCceEEEEEec-CCCCCch--HHHHHHHhccccce
Q 014549 233 MTRFEGELSVDAVTDWFATAIL-KLPRIFYYTKESMGKNFLAKTGPHKVKVIFFSK-TGERASP--FVRQISRNYWAYAS 308 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~~~~~-~~p~~~~it~~~~~~~fl~~~~~~~~~vl~f~~-~~~~~~~--~~~~~a~~~~~~~~ 308 (423)
...|.|-..-..+-.|+...+. ..+... ++. + ..+.+..-+...-+-+|.+. +.-|+.. .+..++... ..+.
T Consensus 75 ~i~f~g~P~g~Ef~s~i~~i~~~~~~~~~-l~~-~-~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~-p~i~ 150 (515)
T TIGR03140 75 GIRFAGIPGGHEFTSLVLAILQVGGHGPK-LDE-G-IIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLN-PNIS 150 (515)
T ss_pred ceEEEecCCcHHHHHHHHHHHHhcCCCCC-CCH-H-HHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhC-CCce
Confidence 5689887777777777765411 112111 222 2 12233332211123345553 3345431 223344332 3333
Q ss_pred EEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 309 FAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 309 f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
....+.. -++++++|++.+.|++++ ++. ..+.|..+.+.+.+.+..
T Consensus 151 ---~~~id~~~~~~~~~~~~v~~VP~~~i---~~~--~~~~g~~~~~~~~~~l~~ 197 (515)
T TIGR03140 151 ---HTMIDGALFQDEVEALGIQGVPAVFL---NGE--EFHNGRMDLAELLEKLEE 197 (515)
T ss_pred ---EEEEEchhCHHHHHhcCCcccCEEEE---CCc--EEEecCCCHHHHHHHHhh
Confidence 2233443 388999999999999987 222 346787777666555543
No 315
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=94.40 E-value=0.059 Score=46.24 Aligned_cols=31 Identities=3% Similarity=0.144 Sum_probs=26.6
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHh
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALL 182 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l 182 (423)
+.++.++.|+.++|++|+++.|.++++....
T Consensus 4 ~a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~ 34 (154)
T cd03023 4 NGDVTIVEFFDYNCGYCKKLAPELEKLLKED 34 (154)
T ss_pred CCCEEEEEEECCCChhHHHhhHHHHHHHHHC
Confidence 3567889999999999999999998877655
No 316
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=94.28 E-value=0.25 Score=41.30 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=38.2
Q ss_pred CchHHHHHHHhccccceEEEEEcccc-----ccHHHHhhcCCC-CCCeEEEecCC
Q 014549 292 ASPFVRQISRNYWAYASFAFVLWREE-----ESSIWWNTFEVE-SAPAIVFLKDP 340 (423)
Q Consensus 292 ~~~~~~~~a~~~~~~~~f~~v~~~~~-----~~~~l~~~f~v~-~~Ptl~lfk~~ 340 (423)
..|.+..++.++...+.|..|.+.+. ....+..+++|. +.||+++|+++
T Consensus 46 ~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~~~I~~~iPT~~~~~~~ 100 (119)
T cd02952 46 AEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTDPKLTTGVPTLLRWKTP 100 (119)
T ss_pred hchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhccCcccCCCEEEEEcCC
Confidence 36778888888876788888876542 136799999998 99999999654
No 317
>PRK13599 putative peroxiredoxin; Provisional
Probab=94.19 E-value=0.28 Score=45.50 Aligned_cols=97 Identities=6% Similarity=-0.063 Sum_probs=60.8
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh------------------------hHHHhhCCCC
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA------------------------THLAERKPIG 209 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~------------------------~~l~~~~~~~ 209 (423)
.+|+.|+++||+.|..-.+.+.++..+++.. +.+..|+++..... ..+++.||+.
T Consensus 31 vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~yg~~ 110 (215)
T PRK13599 31 FVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQLGMI 110 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHHcCCC
Confidence 4567899999999999999999999999754 67778887743211 2234444421
Q ss_pred c-cccccCccEEEEeCCCCCCCCCccccc--CCCCHHHHHHHHHHh
Q 014549 210 Q-IFFRRGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA 252 (423)
Q Consensus 210 ~-~~~i~~~Pti~~f~~g~~~~~~~~~y~--G~~~~~~l~~fi~~~ 252 (423)
. .......|++.++-+++... ....|. ..++.+.|++.+...
T Consensus 111 ~~~~~~~~~R~tfIID~dG~Ir-~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 111 HPGKGTNTVRAVFIVDDKGTIR-LIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred ccCCCCceeeEEEEECCCCEEE-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 0 00013578888887544320 011232 346888888887543
No 318
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=94.16 E-value=0.099 Score=39.25 Aligned_cols=53 Identities=13% Similarity=0.105 Sum_probs=36.2
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
..|..++|++|++....+++ ..+.+-.+|.++++...+..++.| ..++|++.+
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~------~~i~~~~~di~~~~~~~~~~~~~g------~~~vP~v~~ 54 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEE------HGIAFEEINIDEQPEAIDYVKAQG------FRQVPVIVA 54 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHH------CCCceEEEECCCCHHHHHHHHHcC------CcccCEEEE
Confidence 45678999999988866653 235777788886554333344446 779999754
No 319
>PRK13189 peroxiredoxin; Provisional
Probab=94.02 E-value=0.31 Score=45.42 Aligned_cols=41 Identities=10% Similarity=-0.020 Sum_probs=33.3
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEccc
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGD 195 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~ 195 (423)
.+|+.|+++||+.|..-.+.+.+++++++.. +.+..|.++.
T Consensus 38 vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~ 79 (222)
T PRK13189 38 FVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQ 79 (222)
T ss_pred EEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCC
Confidence 4556778999999999999999999999754 5777777763
No 320
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=93.96 E-value=0.042 Score=52.72 Aligned_cols=88 Identities=9% Similarity=0.194 Sum_probs=68.8
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCC
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSS 230 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~ 230 (423)
+...++-+.||+.||+..+...|.+.-....+...-.++ .++........++++ +.+.|++.+...-.
T Consensus 74 n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~---vee~~~lpsv~s~~~------~~~~ps~~~~n~t~--- 141 (319)
T KOG2640|consen 74 NKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFA---VEESQALPSVFSSYG------IHSEPSNLMLNQTC--- 141 (319)
T ss_pred ccCCcccccchhcccCcccccCcccchhhhhcccccccc---HHHHhhcccchhccc------cccCCcceeecccc---
Confidence 346677789999999999999999988777776322222 344445666778888 88999999887654
Q ss_pred CCcccccCCCCHHHHHHHHHHh
Q 014549 231 DCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 231 ~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
+..|.|.++...|++|-.+.
T Consensus 142 --~~~~~~~r~l~sLv~fy~~i 161 (319)
T KOG2640|consen 142 --PASYRGERDLASLVNFYTEI 161 (319)
T ss_pred --chhhcccccHHHHHHHHHhh
Confidence 45899999999999999887
No 321
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=93.81 E-value=0.39 Score=45.63 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=22.6
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHH
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTI 178 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~ 178 (423)
.+.+..++.|..|.|++|+++.++..+.
T Consensus 115 ~~ak~~I~vFtDp~CpyC~kl~~~l~~~ 142 (251)
T PRK11657 115 ADAPRIVYVFADPNCPYCKQFWQQARPW 142 (251)
T ss_pred CCCCeEEEEEECCCChhHHHHHHHHHHH
Confidence 3456788999999999999998776543
No 322
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=93.77 E-value=0.22 Score=41.09 Aligned_cols=81 Identities=11% Similarity=0.049 Sum_probs=55.7
Q ss_pred EEEEEecCC-CCCchHHHHHHHh---ccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCcceeE-ecCCCCh
Q 014549 281 KVIFFSKTG-ERASPFVRQISRN---YWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGVKPVV-YYGSFNN 353 (423)
Q Consensus 281 ~vl~f~~~~-~~~~~~~~~~a~~---~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~~~~~-y~g~~~~ 353 (423)
.+++|+... +.....++.+|.+ +++.+.|+.+...+- ....+.||+++ .|.+.+....+..... +.+.++.
T Consensus 20 ~~l~f~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~--~~~~~~fgl~~~~~P~i~i~~~~~~~Ky~~~~~~~t~ 97 (111)
T cd03072 20 LILFHDKDDLESLKEFKQAVARQLISEKGAINFLTADGDKF--RHPLLHLGKTPADLPVIAIDSFRHMYLFPDFEDVYVP 97 (111)
T ss_pred EEEEecchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHh--hhHHHHcCCCHhHCCEEEEEcchhcCcCCCCccccCH
Confidence 445563211 2234556778989 999988888864332 34899999986 8999988654423333 4678899
Q ss_pred hHHHHHHHhh
Q 014549 354 SRLSEVMEQN 363 (423)
Q Consensus 354 ~~l~~fi~~~ 363 (423)
+.|.+|+++.
T Consensus 98 ~~i~~Fv~~~ 107 (111)
T cd03072 98 GKLKQFVLDL 107 (111)
T ss_pred HHHHHHHHHH
Confidence 9999999874
No 323
>PRK13191 putative peroxiredoxin; Provisional
Probab=93.77 E-value=0.38 Score=44.56 Aligned_cols=97 Identities=6% Similarity=-0.068 Sum_probs=59.1
Q ss_pred cEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhh------------------------hHHHhhCCCC
Q 014549 155 PWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLA------------------------THLAERKPIG 209 (423)
Q Consensus 155 ~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~------------------------~~l~~~~~~~ 209 (423)
.+|+.|+++||+.|..-.+.+.+.+.+++.. +.+..|+++....+ ..+++.||+-
T Consensus 36 vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ygv~ 115 (215)
T PRK13191 36 FVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKRLGMI 115 (215)
T ss_pred EEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHHcCCc
Confidence 3445778999999999999999999999754 67888887733221 1334444421
Q ss_pred ccc-cccCccEEEEeCCCCCCCCCccccc--CCCCHHHHHHHHHHh
Q 014549 210 QIF-FRRGLPSLVAFPPGCKSSDCMTRFE--GELSVDAVTDWFATA 252 (423)
Q Consensus 210 ~~~-~i~~~Pti~~f~~g~~~~~~~~~y~--G~~~~~~l~~fi~~~ 252 (423)
... .....|+..++-+++.. .....|. -.|+.+++++.+...
T Consensus 116 ~~~~~~~~~r~tfIID~~G~I-r~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 116 HAESSTATVRAVFIVDDKGTV-RLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred ccccCCceeEEEEEECCCCEE-EEEEecCCCCCCCHHHHHHHHHHh
Confidence 000 01135777777654431 0011122 357899998888654
No 324
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=93.71 E-value=0.09 Score=46.55 Aligned_cols=42 Identities=21% Similarity=0.247 Sum_probs=34.6
Q ss_pred CCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEc
Q 014549 152 DSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVEL 193 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc 193 (423)
+.++.++.|+.+.|+||+++.+...++.+++.+.+.+..+..
T Consensus 14 ~~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~~~~~~ 55 (178)
T cd03019 14 SGKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKFEKVPV 55 (178)
T ss_pred CCCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceEEEcCC
Confidence 678899999999999999999999999888766665544443
No 325
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=93.69 E-value=0.15 Score=38.12 Aligned_cols=69 Identities=17% Similarity=0.213 Sum_probs=43.9
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y 236 (423)
++.|..+||+.|.+....+++. .+.+-.+|.+++.....+-+..| ...+|+| |.+|..
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~------~i~~~~~~v~~~~~~~~~~~~~g------~~~vP~i--fi~g~~-------- 60 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN------GISYEEIPLGKDITGRSLRAVTG------AMTVPQV--FIDGEL-------- 60 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc------CCCcEEEECCCChhHHHHHHHhC------CCCcCeE--EECCEE--------
Confidence 5678899999999877655532 25667777775543333444446 7789997 455532
Q ss_pred cCCCCHHHHHHHH
Q 014549 237 EGELSVDAVTDWF 249 (423)
Q Consensus 237 ~G~~~~~~l~~fi 249 (423)
-|. .++|.+|+
T Consensus 61 igg--~~~l~~~l 71 (72)
T cd03029 61 IGG--SDDLEKYF 71 (72)
T ss_pred EeC--HHHHHHHh
Confidence 232 56677765
No 326
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=93.69 E-value=0.35 Score=46.17 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=60.6
Q ss_pred CCcEEEEEe-cCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchh-------------------------hhHHHhh
Q 014549 153 SKPWLIQVY-SDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRL-------------------------ATHLAER 205 (423)
Q Consensus 153 ~~~~lV~FY-apwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~-------------------------~~~l~~~ 205 (423)
++++++.|| +.||+.|..-.|.+.+..+++++. +.+..|.++.... ...+++.
T Consensus 98 gk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iaka 177 (261)
T PTZ00137 98 DSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSKS 177 (261)
T ss_pred CCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHHH
Confidence 456777777 799999999999999999998754 5677777663211 1234555
Q ss_pred CCCCcccccc-----CccEEEEeCCCCCCCCCcccc--cCCCCHHHHHHHHHHh
Q 014549 206 KPIGQIFFRR-----GLPSLVAFPPGCKSSDCMTRF--EGELSVDAVTDWFATA 252 (423)
Q Consensus 206 ~~~~~~~~i~-----~~Pti~~f~~g~~~~~~~~~y--~G~~~~~~l~~fi~~~ 252 (423)
|| +. ..|+..++.+++... ....| ...++.+++++.+...
T Consensus 178 yG------v~~~~g~a~R~tFIID~dG~I~-~~~~~~~~~gr~v~eiLr~l~al 224 (261)
T PTZ00137 178 FG------LLRDEGFSHRASVLVDKAGVVK-HVAVYDLGLGRSVDETLRLFDAV 224 (261)
T ss_pred cC------CCCcCCceecEEEEECCCCEEE-EEEEeCCCCCCCHHHHHHHHHHh
Confidence 55 53 468888886443310 01112 2467888888877543
No 327
>PTZ00051 thioredoxin; Provisional
Probab=93.66 E-value=0.33 Score=38.34 Aligned_cols=60 Identities=23% Similarity=0.248 Sum_probs=38.6
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHH
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLS 357 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~ 357 (423)
.+.+..++..+. .+.|+.+... +...++++|++.+.|++++|+++. ....+.|. ..++|.
T Consensus 37 ~~~l~~l~~~~~-~~~~~~vd~~--~~~~~~~~~~v~~~Pt~~~~~~g~-~~~~~~G~-~~~~~~ 96 (98)
T PTZ00051 37 APFYEECSKEYT-KMVFVKVDVD--ELSEVAEKENITSMPTFKVFKNGS-VVDTLLGA-NDEALK 96 (98)
T ss_pred hHHHHHHHHHcC-CcEEEEEECc--chHHHHHHCCCceeeEEEEEeCCe-EEEEEeCC-CHHHhh
Confidence 455666776653 3566666432 236799999999999999997553 33345564 444443
No 328
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=93.56 E-value=0.23 Score=47.55 Aligned_cols=69 Identities=12% Similarity=0.131 Sum_probs=45.0
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeE--e----cCCCChhHHHHHHHhhcc
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y----YGSFNNSRLSEVMEQNKL 365 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~--y----~g~~~~~~l~~fi~~~~~ 365 (423)
...+..+|.+|. .++|..+....+. +..+|.+...|+|++|++++..... . ...++..+|..|+.++..
T Consensus 165 n~~L~~LA~kyp-~vKFvkI~a~~~~---~~~~f~~~~LPtllvYk~G~l~~~~V~l~~~~g~df~~~dlE~~L~~~G~ 239 (265)
T PF02114_consen 165 NSCLECLARKYP-EVKFVKIRASKCP---ASENFPDKNLPTLLVYKNGDLIGNFVGLTDLLGDDFFTEDLEAFLIEYGV 239 (265)
T ss_dssp HHHHHHHHHH-T-TSEEEEEEECGCC---TTTTS-TTC-SEEEEEETTEEEEEECTGGGCT-TT--HHHHHHHHHTTTS
T ss_pred HHHHHHHHHhCC-ceEEEEEehhccC---cccCCcccCCCEEEEEECCEEEEeEEehHHhcCCCCCHHHHHHHHHHcCC
Confidence 345567888874 6889888765543 6788999899999999976543211 1 124677899999988654
No 329
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=93.37 E-value=0.2 Score=37.58 Aligned_cols=56 Identities=7% Similarity=0.046 Sum_probs=36.1
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCcccccc-CccEEEEeCCC
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRR-GLPSLVAFPPG 226 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~-~~Pti~~f~~g 226 (423)
++.|..+||++|++....+++. .+.+-.+|.++++. ...+-+..+ .. ++|+|. .+|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~------~i~~~~i~i~~~~~~~~~~~~~~~------~~~~vP~v~--i~g 59 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK------GVDYEEIDVDGDPALREEMINRSG------GRRTVPQIF--IGD 59 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhC------CCCccCEEE--ECC
Confidence 4677889999999988777642 25677788775422 233334445 45 889774 444
No 330
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.34 E-value=1 Score=36.85 Aligned_cols=53 Identities=15% Similarity=0.221 Sum_probs=38.6
Q ss_pred EEEEccccccHHHHhhcCCCCCCeEEEecC-CCcceeEecCCCChhHHHHHHHh
Q 014549 310 AFVLWREEESSIWWNTFEVESAPAIVFLKD-PGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 310 ~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~-~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..+...+.+...++..|++.++|+++++.+ .+..-....|..+.+.+.+.+++
T Consensus 56 ~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~G~~~~~~f~~~L~~ 109 (114)
T cd02958 56 WQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWSGNITPEDLLSQLIE 109 (114)
T ss_pred EEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEcCCCCHHHHHHHHHH
Confidence 333333334478999999999999999976 44444556899998888777765
No 331
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=93.12 E-value=0.24 Score=37.20 Aligned_cols=53 Identities=11% Similarity=0.016 Sum_probs=35.9
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
++.|..|||++|++....+++. .+.+-.+|..+++. ..++.+..+ -..+|++.
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~------gi~~~~~di~~~~~~~~el~~~~g------~~~vP~v~ 56 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK------GLPYVEINIDIFPERKAELEERTG------SSVVPQIF 56 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC------CCceEEEECCCCHHHHHHHHHHhC------CCCcCEEE
Confidence 4678899999999988666642 25677788875432 334555555 56889873
No 332
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=93.02 E-value=0.12 Score=39.43 Aligned_cols=55 Identities=11% Similarity=0.096 Sum_probs=36.0
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEEEeCCC
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
+.|..|||++|++....+++. .+.+-.+|.+.++. ..++.+..| ..++|+| |.+|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~~------~i~~~~~di~~~~~~~~~~~~~~g------~~~vP~i--~i~g 57 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSSK------GVTFTEIRVDGDPALRDEMMQRSG------RRTVPQI--FIGD 57 (79)
T ss_pred EEEecCCChhHHHHHHHHHHc------CCCcEEEEecCCHHHHHHHHHHhC------CCCcCEE--EECC
Confidence 567789999999988888653 24566667664432 233444445 6789997 4455
No 333
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=92.91 E-value=0.21 Score=40.61 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi 360 (423)
.++.+.|+|.++||++++...+.....+.|-.+.+.|.+++
T Consensus 72 ~~l~~~~~v~gtPt~~~~d~~G~~v~~~~G~~~~~~l~~~L 112 (112)
T PF13098_consen 72 KELAQRYGVNGTPTIVFLDKDGKIVYRIPGYLSPEELLKML 112 (112)
T ss_dssp HHHHHHTT--SSSEEEECTTTSCEEEEEESS--HHHHHHHH
T ss_pred HHHHHHcCCCccCEEEEEcCCCCEEEEecCCCCHHHHHhhC
Confidence 46899999999999999965555445568999988887764
No 334
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=92.64 E-value=0.29 Score=37.79 Aligned_cols=54 Identities=13% Similarity=0.191 Sum_probs=34.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch--hhhHHHhhC-CCCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR--LATHLAERK-PIGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~--~~~~l~~~~-~~~~~~~i~~~Pti~~ 222 (423)
++.|-.|+|++|++....+. +..+.+..++.+.+. ...+..++. | .+++|+|.+
T Consensus 3 v~iyt~~~CPyC~~ak~~L~------~~g~~~~~i~~~~~~~~~~~~~~~~~~g------~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLD------RKGVDYEEIDVDDDEPEEAREMVKRGKG------QRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHH------HcCCCcEEEEecCCcHHHHHHHHHHhCC------CCCcCEEEE
Confidence 45677899999988776665 222466666666443 333344444 5 789998765
No 335
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.56 E-value=0.21 Score=40.19 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=38.0
Q ss_pred ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhH----HHhhCCCCccccccCccEEEEeC
Q 014549 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH----LAERKPIGQIFFRRGLPSLVAFP 224 (423)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~----l~~~~~~~~~~~i~~~Pti~~f~ 224 (423)
.|+++. ++.|-.|||++|++....+++. .+.+..+|.++++...+ +.+..| ...+|+| |.
T Consensus 4 ~i~~~~--Vvvysk~~Cp~C~~ak~~L~~~------~i~~~~vdid~~~~~~~~~~~l~~~tg------~~tvP~V--fi 67 (99)
T TIGR02189 4 MVSEKA--VVIFSRSSCCMCHVVKRLLLTL------GVNPAVHEIDKEPAGKDIENALSRLGC------SPAVPAV--FV 67 (99)
T ss_pred hhccCC--EEEEECCCCHHHHHHHHHHHHc------CCCCEEEEcCCCccHHHHHHHHHHhcC------CCCcCeE--EE
Confidence 344444 5678899999999888766543 24455677764433222 333334 6788987 55
Q ss_pred CC
Q 014549 225 PG 226 (423)
Q Consensus 225 ~g 226 (423)
+|
T Consensus 68 ~g 69 (99)
T TIGR02189 68 GG 69 (99)
T ss_pred CC
Confidence 55
No 336
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.36 E-value=0.082 Score=47.34 Aligned_cols=61 Identities=16% Similarity=0.313 Sum_probs=47.6
Q ss_pred cccccccccCCCC--HHHHHHHHHHHHHhcCCCCCCC--------hHHHHHHHHHHHHHcCChhhHhhhhh
Q 014549 38 SHYDALGIKPYSS--VEQVKEAYEKFSSKWNSGEEIP--------STADFLKIQYAYELLTDPLWKRNYDV 98 (423)
Q Consensus 38 d~y~~lg~~~~a~--~~~ik~ayr~l~~~~hPd~~~~--------~~~~f~~i~~Ay~~L~~~~~r~~yd~ 98 (423)
|++..+|..+.+. .+.++..|+.+.+.+|||+... ..+.+..++.||.+|.+|..|..|=.
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~l 72 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLL 72 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Confidence 4555666665443 4459999999999999998642 23458999999999999999999965
No 337
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=92.15 E-value=0.47 Score=39.09 Aligned_cols=68 Identities=19% Similarity=0.223 Sum_probs=49.0
Q ss_pred chHHHHHHHhcc-ccceEEEEEccccccHHHHhhcCCCC----CCeEEEecCCCcceeEecCCC-ChhHHHHHHHhh
Q 014549 293 SPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVES----APAIVFLKDPGVKPVVYYGSF-NNSRLSEVMEQN 363 (423)
Q Consensus 293 ~~~~~~~a~~~~-~~~~f~~v~~~~~~~~~l~~~f~v~~----~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi~~~ 363 (423)
...++.+|.+|+ +.+.|+.+...+- ....+.||+++ .|++.++...+ +.....++. +.++|.+|++..
T Consensus 37 ~~~~~~vAk~fk~gki~Fv~~D~~~~--~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~~~~~t~e~i~~F~~~f 110 (111)
T cd03073 37 RNRVLKVAKDFPDRKLNFAVADKEDF--SHELEEFGLDFSGGEKPVVAIRTAKG-KKYVMEEEFSDVDALEEFLEDF 110 (111)
T ss_pred HHHHHHHHHHCcCCeEEEEEEcHHHH--HHHHHHcCCCcccCCCCEEEEEeCCC-CccCCCcccCCHHHHHHHHHHh
Confidence 344567999999 6888888754322 34788999984 89999986533 222236778 899999999863
No 338
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=91.54 E-value=1.6 Score=41.95 Aligned_cols=81 Identities=11% Similarity=0.146 Sum_probs=52.1
Q ss_pred eEEEEEec-CCCC--CchHHHHHHHhccccceEEEEEccccc---------cHHHHhhcCCCCCCeEEEecCCCcc-eeE
Q 014549 280 VKVIFFSK-TGER--ASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVK-PVV 346 (423)
Q Consensus 280 ~~vl~f~~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~---------~~~l~~~f~v~~~Ptl~lfk~~~~~-~~~ 346 (423)
.+|.|+.+ |..| ..|.+..++.+|. +.+..|...... ...++++|||...|+++++++++.. ...
T Consensus 169 ~Lv~F~AswCp~C~~~~P~L~~la~~yg--~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~~~~~~v~~v 246 (271)
T TIGR02740 169 GLFFFFKSDCPYCHQQAPILQAFEDRYG--IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLADPDPNQFTPI 246 (271)
T ss_pred EEEEEECCCCccHHHHhHHHHHHHHHcC--cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEECCCCEEEEE
Confidence 34445554 2223 3577777887763 455555543211 2458899999999999999874333 234
Q ss_pred ecCCCChhHHHHHHHh
Q 014549 347 YYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 347 y~g~~~~~~l~~fi~~ 362 (423)
..|.++.+.|.+.|..
T Consensus 247 ~~G~~s~~eL~~~i~~ 262 (271)
T TIGR02740 247 GFGVMSADELVDRILL 262 (271)
T ss_pred EeCCCCHHHHHHHHHH
Confidence 4688888888887765
No 339
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=91.46 E-value=0.86 Score=36.58 Aligned_cols=82 Identities=13% Similarity=0.246 Sum_probs=50.7
Q ss_pred ceEEEEEecCCCCCchH---HHHHHHhccccceEEEEEccccccHHHHhhcCCC----CCC-eEEEecCCCcceeEecCC
Q 014549 279 KVKVIFFSKTGERASPF---VRQISRNYWAYASFAFVLWREEESSIWWNTFEVE----SAP-AIVFLKDPGVKPVVYYGS 350 (423)
Q Consensus 279 ~~~vl~f~~~~~~~~~~---~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~----~~P-tl~lfk~~~~~~~~y~g~ 350 (423)
.++|+|..+. ...... +..+|...++.-..++|.-.+.+...||+++++. .-| .|.-|++++ -.-.|+..
T Consensus 21 NVLvLy~ks~-k~a~~~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~~~LkHYKdG~-fHkdYdR~ 98 (112)
T cd03067 21 NVLVLYSKSA-KSAEALLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKPVELKHYKDGD-FHTEYNRQ 98 (112)
T ss_pred cEEEEEecch-hhHHHHHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCcchhhcccCCC-ccccccch
Confidence 3556555432 222333 3446666666655555554444558899999998 455 345566544 33457778
Q ss_pred CChhHHHHHHHh
Q 014549 351 FNNSRLSEVMEQ 362 (423)
Q Consensus 351 ~~~~~l~~fi~~ 362 (423)
.+..++..|++.
T Consensus 99 ~t~kSmv~FlrD 110 (112)
T cd03067 99 LTFKSMVAFLRD 110 (112)
T ss_pred hhHHHHHHHhhC
Confidence 888889988865
No 340
>PRK10638 glutaredoxin 3; Provisional
Probab=91.36 E-value=0.42 Score=36.90 Aligned_cols=54 Identities=7% Similarity=0.074 Sum_probs=35.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++.|..+||++|++....+++. .+.+..+|+++++ ...++.+..| ...+|+|.+
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~------gi~y~~~dv~~~~~~~~~l~~~~g------~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK------GVSFQEIPIDGDAAKREEMIKRSG------RTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc------CCCcEEEECCCCHHHHHHHHHHhC------CCCcCEEEE
Confidence 4556679999999888666542 2566778887554 2334455556 678998743
No 341
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=91.23 E-value=0.47 Score=38.78 Aligned_cols=69 Identities=25% Similarity=0.326 Sum_probs=45.2
Q ss_pred hhhhhhhcCCCceEEEEEecCCCCC------chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549 268 GKNFLAKTGPHKVKVIFFSKTGERA------SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~~~~~~------~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
++.|+.... ..|+|+..+.... ...+=.+...+......+.+. ......+..+||+...|++++|+++.
T Consensus 19 ld~~l~~~~---~~vlf~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~--~~~e~~L~~r~gv~~~PaLvf~R~g~ 93 (107)
T PF07449_consen 19 LDAFLAAPG---DAVLFFAGDPARFPETADVAVILPELVKAFPGRFRGAVVA--RAAERALAARFGVRRWPALVFFRDGR 93 (107)
T ss_dssp HHHHHHCCS---CEEEEESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEE--HHHHHHHHHHHT-TSSSEEEEEETTE
T ss_pred HHHHHhCCC---cEEEEECCCCCcCcccccceeEcHHHHHhhhCccceEEEC--chhHHHHHHHhCCccCCeEEEEECCE
Confidence 678887544 6788887543221 122334666777776666654 23347899999999999999999764
No 342
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=90.75 E-value=0.36 Score=41.88 Aligned_cols=44 Identities=9% Similarity=0.109 Sum_probs=35.8
Q ss_pred CCCCcEEEEEecCCCccccccHHHHHHHHHHh--hccceEEEEEcc
Q 014549 151 HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALL--EGIANTGMVELG 194 (423)
Q Consensus 151 ~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l--~~~~~~~~Vdc~ 194 (423)
.+.++.++.|..+.|+||.++.+...++-+.+ .|.+.+..++..
T Consensus 10 ~~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~ 55 (162)
T PF13462_consen 10 PDAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVP 55 (162)
T ss_dssp TTTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESS
T ss_pred CCCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEcc
Confidence 34677899999999999999999999988888 677777777664
No 343
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=90.55 E-value=0.48 Score=39.94 Aligned_cols=71 Identities=14% Similarity=0.135 Sum_probs=55.6
Q ss_pred cccc--CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCcc-EEEEe
Q 014549 147 PSIF--HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLP-SLVAF 223 (423)
Q Consensus 147 ~~~v--~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~P-ti~~f 223 (423)
++.| ..++.++|-|=.+|-+.|.++-....++|+.++....++.||.+ .-+++.+-|. +. -| |+++|
T Consensus 12 DqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~---~Vpdfn~~ye------l~-dP~tvmFF 81 (133)
T PF02966_consen 12 DQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDID---EVPDFNQMYE------LY-DPCTVMFF 81 (133)
T ss_dssp HHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETT---TTHCCHHHTT------S--SSEEEEEE
T ss_pred HHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcc---cchhhhcccc------cC-CCeEEEEE
Confidence 3444 56889999999999999999999999999999999999999999 5555777777 66 45 46666
Q ss_pred CCCC
Q 014549 224 PPGC 227 (423)
Q Consensus 224 ~~g~ 227 (423)
-+++
T Consensus 82 ~rnk 85 (133)
T PF02966_consen 82 FRNK 85 (133)
T ss_dssp ETTE
T ss_pred ecCe
Confidence 4554
No 344
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=90.53 E-value=1.6 Score=40.85 Aligned_cols=78 Identities=23% Similarity=0.203 Sum_probs=51.1
Q ss_pred eEEEEEec-C--CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHH
Q 014549 280 VKVIFFSK-T--GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 280 ~~vl~f~~-~--~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l 356 (423)
++|-|..+ + ++...|.+..++.+|. ..-|..|.+..| +..+..+||+.-||+++|+++... ..+.|. +...|
T Consensus 24 v~Vdfta~wCGPCk~IaP~Fs~lankYp-~aVFlkVdVd~c--~~taa~~gV~amPTFiff~ng~ki-d~~qGA-d~~gL 98 (288)
T KOG0908|consen 24 VVVDFTASWCGPCKRIAPIFSDLANKYP-GAVFLKVDVDEC--RGTAATNGVNAMPTFIFFRNGVKI-DQIQGA-DASGL 98 (288)
T ss_pred EEEEEEecccchHHhhhhHHHHhhhhCc-ccEEEEEeHHHh--hchhhhcCcccCceEEEEecCeEe-eeecCC-CHHHH
Confidence 45556554 2 2445799999999985 445777777666 467889999999999999876433 223443 33344
Q ss_pred HHHHHh
Q 014549 357 SEVMEQ 362 (423)
Q Consensus 357 ~~fi~~ 362 (423)
.+-|.+
T Consensus 99 e~kv~~ 104 (288)
T KOG0908|consen 99 EEKVAK 104 (288)
T ss_pred HHHHHH
Confidence 444443
No 345
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=90.35 E-value=0.98 Score=48.22 Aligned_cols=57 Identities=14% Similarity=0.206 Sum_probs=42.4
Q ss_pred cceEEEEEcccc--ccHHHHhhcCCCCCCeEEEecCCCcc--eeEecCCCChhHHHHHHHh
Q 014549 306 YASFAFVLWREE--ESSIWWNTFEVESAPAIVFLKDPGVK--PVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 306 ~~~f~~v~~~~~--~~~~l~~~f~v~~~Ptl~lfk~~~~~--~~~y~g~~~~~~l~~fi~~ 362 (423)
.+.+..+++.+. +..++.++|++.+.|++++|+.+++. ...+.|..+.+++.+++++
T Consensus 508 ~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~~~~~~~G~~i~~~r~~G~~~~~~f~~~L~~ 568 (571)
T PRK00293 508 DTVLLQADVTANNAEDVALLKHYNVLGLPTILFFDAQGQEIPDARVTGFMDAAAFAAHLRQ 568 (571)
T ss_pred CCEEEEEECCCCChhhHHHHHHcCCCCCCEEEEECCCCCCcccccccCCCCHHHHHHHHHH
Confidence 355666665443 23689999999999999999754443 2456788899999999886
No 346
>PHA03050 glutaredoxin; Provisional
Probab=90.34 E-value=0.33 Score=39.84 Aligned_cols=65 Identities=9% Similarity=0.104 Sum_probs=38.7
Q ss_pred ccCCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccc---hh-hhHHHhhCCCCccccccCccEEEEeC
Q 014549 149 IFHDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDI---RL-ATHLAERKPIGQIFFRRGLPSLVAFP 224 (423)
Q Consensus 149 ~v~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~---~~-~~~l~~~~~~~~~~~i~~~Pti~~f~ 224 (423)
.+++++ ++.|..+||++|++....+++..-.. -.+-.+|.+++ .. ...+-+.-| ...+|+| |.
T Consensus 9 ~i~~~~--V~vys~~~CPyC~~ak~~L~~~~i~~---~~~~~i~i~~~~~~~~~~~~l~~~tG------~~tVP~I--fI 75 (108)
T PHA03050 9 RLANNK--VTIFVKFTCPFCRNALDILNKFSFKR---GAYEIVDIKEFKPENELRDYFEQITG------GRTVPRI--FF 75 (108)
T ss_pred HhccCC--EEEEECCCChHHHHHHHHHHHcCCCc---CCcEEEECCCCCCCHHHHHHHHHHcC------CCCcCEE--EE
Confidence 344444 57789999999999887776553211 13555666531 11 223444445 6789998 44
Q ss_pred CC
Q 014549 225 PG 226 (423)
Q Consensus 225 ~g 226 (423)
+|
T Consensus 76 ~g 77 (108)
T PHA03050 76 GK 77 (108)
T ss_pred CC
Confidence 45
No 347
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=90.21 E-value=0.91 Score=37.06 Aligned_cols=92 Identities=13% Similarity=0.089 Sum_probs=61.3
Q ss_pred CCcccccCCC-CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEE
Q 014549 144 EDFPSIFHDS-KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 144 ~nf~~~v~~~-~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
++.+..+... ++.+|=|+..--+ .....|.++|..+.....|+...-. . +.++++ +. .|.+++
T Consensus 9 ~ele~f~~~~~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t~~~---~---~~~~~~------~~-~~~vvl 72 (107)
T cd03068 9 KQVQEFLRDGDDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHTFDS---E---IFKSLK------VS-PGQLVV 72 (107)
T ss_pred HHHHHHHhcCCCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEEChH---H---HHHhcC------CC-CCceEE
Confidence 4456666555 6777777765433 4567899999999888888776544 2 666766 54 577888
Q ss_pred eCCCCCC---CCCcccccCC-CCHHH-HHHHHHH
Q 014549 223 FPPGCKS---SDCMTRFEGE-LSVDA-VTDWFAT 251 (423)
Q Consensus 223 f~~g~~~---~~~~~~y~G~-~~~~~-l~~fi~~ 251 (423)
|++..-. .+....|.|. .+.++ |.+|+..
T Consensus 73 ~rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~ 106 (107)
T cd03068 73 FQPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKE 106 (107)
T ss_pred ECcHHHhhhcCcceeeeeccccchHHHHHHHHhc
Confidence 8765321 2234467877 56655 9999864
No 348
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=90.17 E-value=0.63 Score=36.65 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=32.7
Q ss_pred CCCccccccHHHHHHHHHHhhccceEEEEEcccchhh-hHHHhhCCCCccccccCccEEEEeCCC
Q 014549 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLA-THLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~-~~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
|||++|++....+++.. +.+-.+|..++... ..+.+..| ...+|+| |.+|
T Consensus 21 ~~Cp~C~~ak~~L~~~~------i~y~~idv~~~~~~~~~l~~~~g------~~tvP~v--fi~g 71 (90)
T cd03028 21 PRCGFSRKVVQILNQLG------VDFGTFDILEDEEVRQGLKEYSN------WPTFPQL--YVNG 71 (90)
T ss_pred CCCcHHHHHHHHHHHcC------CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEE--EECC
Confidence 79999998876665432 56777787655433 33444445 6788997 4455
No 349
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.66 E-value=0.44 Score=38.20 Aligned_cols=50 Identities=12% Similarity=0.037 Sum_probs=31.9
Q ss_pred CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhh-HHHhhCCCCccccccCccEEEEeCCC
Q 014549 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLAT-HLAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~-~l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
|||++|++....+.+.. +.+-.+|..+++... .+.+..| ...+|+|. .+|
T Consensus 25 ~~Cp~C~~ak~lL~~~~------i~~~~~di~~~~~~~~~l~~~tg------~~tvP~vf--i~g 75 (97)
T TIGR00365 25 PQCGFSARAVQILKACG------VPFAYVNVLEDPEIRQGIKEYSN------WPTIPQLY--VKG 75 (97)
T ss_pred CCCchHHHHHHHHHHcC------CCEEEEECCCCHHHHHHHHHHhC------CCCCCEEE--ECC
Confidence 89999998887765532 456677876443322 3444445 66889874 444
No 350
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=89.23 E-value=0.37 Score=44.25 Aligned_cols=41 Identities=15% Similarity=0.216 Sum_probs=31.8
Q ss_pred CCcEEEEEecCCCccccccHHHH---HHHHHHhhccceEEEEEc
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAW---KTIAALLEGIANTGMVEL 193 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~---~~~A~~l~~~~~~~~Vdc 193 (423)
+++-+|+|++..|+||.++.|.+ +.+.+.+.+.+.+..+..
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~~ 80 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYHV 80 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEecc
Confidence 35679999999999999999865 777777766656655544
No 351
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=89.13 E-value=0.85 Score=35.11 Aligned_cols=80 Identities=15% Similarity=0.129 Sum_probs=52.8
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y 236 (423)
++.|..|.|+-|..+....++++.. ..+.+-.||.+++ .++-++|+ . ..|.+.+=..++. ......
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~--~~~~l~~vDI~~d---~~l~~~Y~------~-~IPVl~~~~~~~~--~~~~~~ 67 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAE--FPFELEEVDIDED---PELFEKYG------Y-RIPVLHIDGIRQF--KEQEEL 67 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTT--STCEEEEEETTTT---HHHHHHSC------T-STSEEEETT-GGG--CTSEEE
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhh--cCceEEEEECCCC---HHHHHHhc------C-CCCEEEEcCcccc--ccccee
Confidence 6778899999998877666554332 2378999999944 45889997 3 6898765432211 002245
Q ss_pred cCCCCHHHHHHHHH
Q 014549 237 EGELSVDAVTDWFA 250 (423)
Q Consensus 237 ~G~~~~~~l~~fi~ 250 (423)
.+..+.+.|.+|++
T Consensus 68 ~~~~d~~~L~~~L~ 81 (81)
T PF05768_consen 68 KWRFDEEQLRAWLE 81 (81)
T ss_dssp ESSB-HHHHHHHHH
T ss_pred CCCCCHHHHHHHhC
Confidence 57889999999874
No 352
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=88.46 E-value=2.8 Score=36.75 Aligned_cols=43 Identities=19% Similarity=0.326 Sum_probs=35.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..+.+.|++...|+++++.+++.....+.|..+.+.+.++++.
T Consensus 128 ~~~~~~~~v~~~P~~~lid~~g~i~~~~~g~~~~~~l~~~l~~ 170 (173)
T PRK03147 128 RQVIDAYGVGPLPTTFLIDKDGKVVKVITGEMTEEQLEEYLEK 170 (173)
T ss_pred chHHHHcCCCCcCeEEEECCCCcEEEEEeCCCCHHHHHHHHHH
Confidence 5688999999999999997666555566888888899998876
No 353
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=88.04 E-value=0.85 Score=38.47 Aligned_cols=53 Identities=21% Similarity=0.137 Sum_probs=36.7
Q ss_pred cccccccccCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChh
Q 014549 38 SHYDALGIKPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPL 91 (423)
Q Consensus 38 d~y~~lg~~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~ 91 (423)
.-..||||++..+.++|.+.|.+|-...+|++. |..=-=-.|..|.+.|..+.
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kG-GSfYLQSKV~rAKErl~~El 111 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKG-GSFYLQSKVFRAKERLEQEL 111 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCT-S-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcC-CCHHHHHHHHHHHHHHHHHH
Confidence 456899999999999999999999999999986 44333456677777776443
No 354
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=87.28 E-value=1.2 Score=40.76 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=61.5
Q ss_pred cceeeEecc-CCcccccCC---CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCc
Q 014549 135 VHAFNVVTS-EDFPSIFHD---SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQ 210 (423)
Q Consensus 135 ~~~v~~L~~-~nf~~~v~~---~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~ 210 (423)
..-|++|+. +.|-+.|+. ....+|..|-|.-.-|..+.....=+|.++ ..++|.+|-.+ . . +.+.
T Consensus 137 ~~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss---~-~------gas~ 205 (273)
T KOG3171|consen 137 YGFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSS---N-T------GASD 205 (273)
T ss_pred cceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeec---c-c------cchh
Confidence 334888876 568778833 355678999999999999988888777764 34789888876 2 1 2233
Q ss_pred cccccCccEEEEeCCCCC
Q 014549 211 IFFRRGLPSLVAFPPGCK 228 (423)
Q Consensus 211 ~~~i~~~Pti~~f~~g~~ 228 (423)
+|....+||+.+|.+|.-
T Consensus 206 ~F~~n~lP~LliYkgGeL 223 (273)
T KOG3171|consen 206 RFSLNVLPTLLIYKGGEL 223 (273)
T ss_pred hhcccCCceEEEeeCCch
Confidence 444889999999999864
No 355
>smart00594 UAS UAS domain.
Probab=86.63 E-value=5 Score=33.37 Aligned_cols=49 Identities=14% Similarity=0.134 Sum_probs=34.2
Q ss_pred EEccccccHHHHhhcCCCCCCeEEEecCCCcc---ee--EecCCCChhHHHHHH
Q 014549 312 VLWREEESSIWWNTFEVESAPAIVFLKDPGVK---PV--VYYGSFNNSRLSEVM 360 (423)
Q Consensus 312 v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~---~~--~y~g~~~~~~l~~fi 360 (423)
+.+.+.+...+++.|++.++|+++++...+.. .+ ...|..+.++|..++
T Consensus 68 ~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l 121 (122)
T smart00594 68 VDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL 121 (122)
T ss_pred ecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence 44444444789999999999999999654421 11 247888888877765
No 356
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=86.59 E-value=0.78 Score=41.45 Aligned_cols=99 Identities=18% Similarity=0.321 Sum_probs=67.8
Q ss_pred eeEeccCCccccc--CC-CCcEEEEEecCCCccccccHHHHHHHHHHhhcc--ceEEEEEcccchhhhHHHhhCCCCccc
Q 014549 138 FNVVTSEDFPSIF--HD-SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI--ANTGMVELGDIRLATHLAERKPIGQIF 212 (423)
Q Consensus 138 v~~L~~~nf~~~v--~~-~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~--~~~~~Vdc~~~~~~~~l~~~~~~~~~~ 212 (423)
|..++..+|.+-| .+ +-.++|..|...-+.|.-+.-.++.+|..+... +++-.-.|..| |+
T Consensus 93 V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cIpN---------YP----- 158 (240)
T KOG3170|consen 93 VFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCIPN---------YP----- 158 (240)
T ss_pred eeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEecccccccCC---------Cc-----
Confidence 6778888887666 34 444568899999999999999999999988654 34444456643 33
Q ss_pred cccCccEEEEeCCCCCCCCC---cccccCC-CCHHHHHHHHHHh
Q 014549 213 FRRGLPSLVAFPPGCKSSDC---MTRFEGE-LSVDAVTDWFATA 252 (423)
Q Consensus 213 ~i~~~Pti~~f~~g~~~~~~---~~~y~G~-~~~~~l~~fi~~~ 252 (423)
=...|||++|..|... .+ +-.+-|. .+.+++..++-+.
T Consensus 159 -e~nlPTl~VY~~G~lk-~q~igll~lgG~n~t~ed~e~~L~qa 200 (240)
T KOG3170|consen 159 -ESNLPTLLVYHHGALK-KQMIGLLELGGMNLTMEDVEDFLVQA 200 (240)
T ss_pred -ccCCCeEEEeecchHH-hheehhhhhcCCcCCHHHHHHHHHhc
Confidence 4578999999999752 11 1123343 3566666666554
No 357
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=86.54 E-value=4.8 Score=32.81 Aligned_cols=93 Identities=16% Similarity=0.106 Sum_probs=45.5
Q ss_pred cccchhhhhhhhhcCCCceEEEEEecCCCCCchH--H---HHHHHhccccceEEEEEccccc--cHHHHhhcCCCC-CCe
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSKTGERASPF--V---RQISRNYWAYASFAFVLWREEE--SSIWWNTFEVES-APA 333 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~~~~~~~~~--~---~~~a~~~~~~~~f~~v~~~~~~--~~~l~~~f~v~~-~Pt 333 (423)
+++.+.+++++... .++++++|=.+. .|+.+. + ........+.+.++++.+.+.- +..++++|||.. .|-
T Consensus 4 L~t~eql~~i~~~S-~~~~~~iFKHSt-~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 4 LTTEEQLEEILEES-KEKPVLIFKHST-RCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp --SHHHHHHHHHH----SEEEEEEE-T-T-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred cCCHHHHHHHHHhc-ccCcEEEEEeCC-CChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 34444466777652 344666653332 233222 1 2222222223778888765542 478999999986 999
Q ss_pred EEEecCCCcceeEecCCCChhHH
Q 014549 334 IVFLKDPGVKPVVYYGSFNNSRL 356 (423)
Q Consensus 334 l~lfk~~~~~~~~y~g~~~~~~l 356 (423)
+++++++...-..-+..++.+.|
T Consensus 82 ~ili~~g~~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGKVVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTEEEEEEEGGG-SHHHH
T ss_pred EEEEECCEEEEECccccCCHHhc
Confidence 99999765433333556666655
No 358
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=85.83 E-value=1.6 Score=39.97 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=49.4
Q ss_pred hhhhhhhcCCCceEEEEEec---CCCCCchHHHHHHHhcc-ccceEEEEEccccccHHHHhhcCCC------CCCeEEEe
Q 014549 268 GKNFLAKTGPHKVKVIFFSK---TGERASPFVRQISRNYW-AYASFAFVLWREEESSIWWNTFEVE------SAPAIVFL 337 (423)
Q Consensus 268 ~~~fl~~~~~~~~~vl~f~~---~~~~~~~~~~~~a~~~~-~~~~f~~v~~~~~~~~~l~~~f~v~------~~Ptl~lf 337 (423)
.+.-+..+....|++=||+. ++...+|.+-.++.+|. +.++||.|....= ++.+++|+|+ ..||+++|
T Consensus 135 ~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrf--pd~a~kfris~s~~srQLPT~ilF 212 (265)
T KOG0914|consen 135 EDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRF--PDVAAKFRISLSPGSRQLPTYILF 212 (265)
T ss_pred HHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccC--cChHHheeeccCcccccCCeEEEE
Confidence 33334333334578878863 34456788888888887 5588999865432 5688999996 28999999
Q ss_pred cCCC
Q 014549 338 KDPG 341 (423)
Q Consensus 338 k~~~ 341 (423)
+++.
T Consensus 213 q~gk 216 (265)
T KOG0914|consen 213 QKGK 216 (265)
T ss_pred ccch
Confidence 8764
No 359
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=84.70 E-value=4 Score=38.15 Aligned_cols=54 Identities=11% Similarity=0.066 Sum_probs=43.3
Q ss_pred cceeeEeccCCccccc---CCCCcEEEEEecCCCccccccHHHHHHHHHHhhccceE
Q 014549 135 VHAFNVVTSEDFPSIF---HDSKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANT 188 (423)
Q Consensus 135 ~~~v~~L~~~nf~~~v---~~~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~ 188 (423)
+++|+.++.++..++. +.++|.+++|=|-.|+.=..-.+.|+++++++.+.+.|
T Consensus 81 ns~vv~l~g~~~~~ildf~~g~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adF 137 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKGNRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADF 137 (237)
T ss_pred CCceEeeCCCcceeHHHhccCCCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhhe
Confidence 5568999888854444 88999999999999988877778999999988875433
No 360
>PRK10824 glutaredoxin-4; Provisional
Probab=83.80 E-value=1.7 Score=36.07 Aligned_cols=50 Identities=14% Similarity=0.090 Sum_probs=28.4
Q ss_pred CCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhH-HHhhCCCCccccccCccEEEEeCCC
Q 014549 163 DGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATH-LAERKPIGQIFFRRGLPSLVAFPPG 226 (423)
Q Consensus 163 pwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~-l~~~~~~~~~~~i~~~Pti~~f~~g 226 (423)
|||++|++....+.+.. +.+..+|..++..... |-+.-| ...+|.| |.+|
T Consensus 28 p~Cpyc~~ak~lL~~~~------i~~~~idi~~d~~~~~~l~~~sg------~~TVPQI--FI~G 78 (115)
T PRK10824 28 PSCGFSAQAVQALSACG------ERFAYVDILQNPDIRAELPKYAN------WPTFPQL--WVDG 78 (115)
T ss_pred CCCchHHHHHHHHHHcC------CCceEEEecCCHHHHHHHHHHhC------CCCCCeE--EECC
Confidence 79999999887776542 3445566654432222 222223 5566764 4455
No 361
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=83.54 E-value=3.2 Score=36.18 Aligned_cols=54 Identities=13% Similarity=-0.019 Sum_probs=41.3
Q ss_pred CcEEEEEe-cCCCcccccc-HHHHHHHHHHhhcc-c-eEEEEEcccchhhhHHHhhCC
Q 014549 154 KPWLIQVY-SDGSYLCGQF-SGAWKTIAALLEGI-A-NTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 154 ~~~lV~FY-apwC~~C~~~-~p~~~~~A~~l~~~-~-~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
+++++.|| +.||+.|..- .+.+.+...+++.. + .+..|.++........+++.+
T Consensus 30 k~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~ 87 (155)
T cd03013 30 KKVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALG 87 (155)
T ss_pred CcEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhC
Confidence 34555555 6799999997 99999999998755 3 588898886656666777776
No 362
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=83.20 E-value=2.5 Score=44.13 Aligned_cols=52 Identities=10% Similarity=0.179 Sum_probs=42.7
Q ss_pred CCCchHHHHHHHhccccceEEEEEccccc---cHHHHhhcCCCCCCeEEEecCCC
Q 014549 290 ERASPFVRQISRNYWAYASFAFVLWREEE---SSIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 290 ~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---~~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
-...|.++.+|......-.+..|...||. +..+|..|+|+.+|+|.+|+.+.
T Consensus 73 r~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Ptlryf~~~~ 127 (606)
T KOG1731|consen 73 RAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPTLRYFPPDS 127 (606)
T ss_pred hhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCceeeecCCcc
Confidence 45689999998877777777777777884 36899999999999999998763
No 363
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=83.18 E-value=7.3 Score=31.85 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=29.4
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~ 358 (423)
..+++.|++.+.|+++++.+++ ....+.|-.+.+.|.+
T Consensus 83 ~~~~~~~~i~~~P~~~vid~~g-i~~~~~g~~~~~~~~~ 120 (123)
T cd03011 83 GVISARWGVSVTPAIVIVDPGG-IVFVTTGVTSEWGLRL 120 (123)
T ss_pred cHHHHhCCCCcccEEEEEcCCC-eEEEEeccCCHHHHHh
Confidence 5689999999999999997665 4445578777777654
No 364
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=82.97 E-value=5.2 Score=30.20 Aligned_cols=59 Identities=17% Similarity=0.167 Sum_probs=37.5
Q ss_pred CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCC-ChhHHHHHH
Q 014549 292 ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSF-NNSRLSEVM 360 (423)
Q Consensus 292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~-~~~~l~~fi 360 (423)
..+.++.++.++...+.+..+. +.+.+.++++.+.|++++ ++ . . .+.|.. +.+.|.+++
T Consensus 16 ~~~~~~~~~~e~~~~~~~~~v~-----~~~~a~~~~v~~vPti~i--~G-~-~-~~~G~~~~~~~l~~~l 75 (76)
T TIGR00412 16 TEKNVKKAVEELGIDAEFEKVT-----DMNEILEAGVTATPGVAV--DG-E-L-VIMGKIPSKEEIKEIL 75 (76)
T ss_pred HHHHHHHHHHHcCCCeEEEEeC-----CHHHHHHcCCCcCCEEEE--CC-E-E-EEEeccCCHHHHHHHh
Confidence 3456677777776555555543 233577899999999999 32 2 2 256753 446777765
No 365
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=82.10 E-value=2 Score=43.83 Aligned_cols=60 Identities=8% Similarity=-0.024 Sum_probs=35.8
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCC---CCccccccCccEEEE
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKP---IGQIFFRRGLPSLVA 222 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~---~~~~~~i~~~Pti~~ 222 (423)
++.|..|||++|++.+..+.+. .+.+-.+|.++++...++-++.+ +....+.+.+|+|.+
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~------gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN------DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC------CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 5678899999998877665542 25777888875543222222211 000111678899855
No 366
>PTZ00062 glutaredoxin; Provisional
Probab=80.83 E-value=8 Score=35.52 Aligned_cols=71 Identities=13% Similarity=0.108 Sum_probs=45.1
Q ss_pred eEEEEEe-c-CCCC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 280 VKVIFFS-K-TGER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 280 ~~vl~f~-~-~~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
..|++|. + +.+| ..+.+..++.+| ..+.|..|. .+ |+|...|++++|+++... -.+.|. +...
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~-~~~~F~~V~---~d-------~~V~~vPtfv~~~~g~~i-~r~~G~-~~~~ 85 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDF-PSLEFYVVN---LA-------DANNEYGVFEFYQNSQLI-NSLEGC-NTST 85 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHC-CCcEEEEEc---cc-------cCcccceEEEEEECCEEE-eeeeCC-CHHH
Confidence 5666664 3 2233 346667788887 457787774 11 999999999999876532 233443 4566
Q ss_pred HHHHHHhh
Q 014549 356 LSEVMEQN 363 (423)
Q Consensus 356 l~~fi~~~ 363 (423)
|..++..+
T Consensus 86 ~~~~~~~~ 93 (204)
T PTZ00062 86 LVSFIRGW 93 (204)
T ss_pred HHHHHHHH
Confidence 66666654
No 367
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=79.87 E-value=3.2 Score=37.80 Aligned_cols=39 Identities=15% Similarity=0.281 Sum_probs=32.9
Q ss_pred cCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHc-CC
Q 014549 46 KPYSSVEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELL-TD 89 (423)
Q Consensus 46 ~~~a~~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L-~~ 89 (423)
+++|+.+||.+|+.++..+| .++.+.-..|..||+.+ ++
T Consensus 1 S~~ASfeEIq~Arn~ll~~y-----~gd~~~~~~IEaAYD~ILM~ 40 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQY-----AGDEKSREAIEAAYDAILME 40 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHHHH
Confidence 57899999999999999998 45667888999999954 53
No 368
>PF13728 TraF: F plasmid transfer operon protein
Probab=79.56 E-value=11 Score=34.77 Aligned_cols=77 Identities=17% Similarity=0.190 Sum_probs=47.7
Q ss_pred EEEEEecCC---CCCchHHHHHHHhccccceEEEEEcccc---------ccHHHHhhcCCCCCCeEEEecCCCcce-eEe
Q 014549 281 KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREE---------ESSIWWNTFEVESAPAIVFLKDPGVKP-VVY 347 (423)
Q Consensus 281 ~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~---------~~~~l~~~f~v~~~Ptl~lfk~~~~~~-~~y 347 (423)
+++|+.+.| ....|.++.++.+| .+.+..|..... .+..++++|||...|++++....+.+. .+-
T Consensus 124 L~~F~~~~C~~C~~~~pil~~~~~~y--g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~Lv~~~~~~~~pv~ 201 (215)
T PF13728_consen 124 LFFFYRSDCPYCQQQAPILQQFADKY--GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALFLVNPNTKKWYPVS 201 (215)
T ss_pred EEEEEcCCCchhHHHHHHHHHHHHHh--CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEEEEECCCCeEEEEe
Confidence 444555432 12356667777776 334444443211 236689999999999999998766433 233
Q ss_pred cCCCChhHHHHH
Q 014549 348 YGSFNNSRLSEV 359 (423)
Q Consensus 348 ~g~~~~~~l~~f 359 (423)
.|-++.++|.+-
T Consensus 202 ~G~~s~~~L~~r 213 (215)
T PF13728_consen 202 QGFMSLDELEDR 213 (215)
T ss_pred eecCCHHHHHHh
Confidence 788888777653
No 369
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=78.91 E-value=4.6 Score=32.83 Aligned_cols=34 Identities=6% Similarity=0.009 Sum_probs=24.6
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
+|.|-.+||+.|+++...|.+ +.....+..+|-.
T Consensus 16 VVifSKs~C~~c~~~k~ll~~----~~v~~~vvELD~~ 49 (104)
T KOG1752|consen 16 VVIFSKSSCPYCHRAKELLSD----LGVNPKVVELDED 49 (104)
T ss_pred EEEEECCcCchHHHHHHHHHh----CCCCCEEEEccCC
Confidence 367888999999998888876 3333466666655
No 370
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=77.74 E-value=10 Score=39.91 Aligned_cols=43 Identities=9% Similarity=0.205 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..+.+.|+|.+.|+.+++.+.+.....+.|.++.+.|.++|+.
T Consensus 129 ~~lak~fgV~giPTt~IIDkdGkIV~~~~G~~~~eeL~a~Ie~ 171 (521)
T PRK14018 129 GTLAQSLNISVYPSWAIIGKDGDVQRIVKGSISEAQALALIRN 171 (521)
T ss_pred HHHHHHcCCCCcCeEEEEcCCCeEEEEEeCCCCHHHHHHHHHH
Confidence 5688999999999998775545444556899999999999883
No 371
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=74.30 E-value=3.6 Score=34.09 Aligned_cols=65 Identities=15% Similarity=0.150 Sum_probs=34.4
Q ss_pred CCceEEEEE-ecCC-CC--CchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCC--CCeEEEecCCCc
Q 014549 277 PHKVKVIFF-SKTG-ER--ASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVES--APAIVFLKDPGV 342 (423)
Q Consensus 277 ~~~~~vl~f-~~~~-~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~--~Ptl~lfk~~~~ 342 (423)
.++++++.| ++.| .| ..+.+...+..+.....|..+.+... .....+.|++.+ .||+++|...++
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~-~~~~~~~~~~~g~~vPt~~f~~~~Gk 88 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDD-EEPKDEEFSPDGGYIPRILFLDPSGD 88 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCC-CCchhhhcccCCCccceEEEECCCCC
Confidence 345666655 4422 22 23444443332222345666654432 234567888876 999999964433
No 372
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=74.27 E-value=42 Score=27.68 Aligned_cols=48 Identities=8% Similarity=-0.003 Sum_probs=33.0
Q ss_pred cccccHHHHhhcCCCCCCeEEEecCCCcc---eeEecCCCChhHHHHHHHh
Q 014549 315 REEESSIWWNTFEVESAPAIVFLKDPGVK---PVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 315 ~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~---~~~y~g~~~~~~l~~fi~~ 362 (423)
...+...++..+++.++|+++++-..+.+ -....|..++++|...++.
T Consensus 61 ~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~L~~ 111 (116)
T cd02991 61 AKPEGYRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINRLTF 111 (116)
T ss_pred CChHHHHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHHHHH
Confidence 33334679999999999999988322222 2234799998888776654
No 373
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=72.92 E-value=11 Score=31.23 Aligned_cols=23 Identities=30% Similarity=0.524 Sum_probs=18.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCCc
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~ 342 (423)
..+++.|++.+.|+++++..++.
T Consensus 89 ~~~~~~~~v~~~P~~~lid~~G~ 111 (131)
T cd03009 89 SRLNRTFKIEGIPTLIILDADGE 111 (131)
T ss_pred HHHHHHcCCCCCCEEEEECCCCC
Confidence 46788999999999999975443
No 374
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=72.38 E-value=8.3 Score=33.66 Aligned_cols=39 Identities=21% Similarity=0.306 Sum_probs=28.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSE 358 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~ 358 (423)
++|+++|++++.|++++|...+..-....|-+.++.+..
T Consensus 105 ~ELa~kf~vrstPtfvFfdk~Gk~Il~lPGY~ppe~Fl~ 143 (182)
T COG2143 105 EELAQKFAVRSTPTFVFFDKTGKTILELPGYMPPEQFLA 143 (182)
T ss_pred HHHHHHhccccCceEEEEcCCCCEEEecCCCCCHHHHHH
Confidence 689999999999999999765554333367676665443
No 375
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=70.46 E-value=13 Score=26.69 Aligned_cols=41 Identities=22% Similarity=0.121 Sum_probs=26.9
Q ss_pred chHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEE
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVF 336 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~l 336 (423)
.+.+..++..+ ..+.+..+...+ .++++++|++.+.|++++
T Consensus 18 ~~~l~~l~~~~-~~i~~~~id~~~--~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 18 VQAANRIAALN-PNISAEMIDAAE--FPDLADEYGVMSVPAIVI 58 (67)
T ss_pred HHHHHHHHHhC-CceEEEEEEccc--CHhHHHHcCCcccCEEEE
Confidence 34455555443 346666665332 367999999999999876
No 376
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=69.65 E-value=7.3 Score=35.71 Aligned_cols=82 Identities=13% Similarity=0.197 Sum_probs=51.9
Q ss_pred eEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcce--eE----ecCC
Q 014549 280 VKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKP--VV----YYGS 350 (423)
Q Consensus 280 ~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~--~~----y~g~ 350 (423)
.+|.++.+- ++.+...+..+|.+| ..++|..+..+... .-.+|..+..|+|++|+++.--. +. +-.+
T Consensus 162 i~VhIYEdgi~gcealn~~~~cLAAey-P~vKFckikss~~g---as~~F~~n~lP~LliYkgGeLIgNFv~va~qlged 237 (273)
T KOG3171|consen 162 IVVHIYEDGIKGCEALNSSLTCLAAEY-PIVKFCKIKSSNTG---ASDRFSLNVLPTLLIYKGGELIGNFVSVAEQLGED 237 (273)
T ss_pred EEEEEecCCCchHHHHhhhHHHhhccC-CceeEEEeeecccc---chhhhcccCCceEEEeeCCchhHHHHHHHHHHhhh
Confidence 445556532 233445556688887 56788887654433 55678888899999999765321 11 1234
Q ss_pred CChhHHHHHHHhhcc
Q 014549 351 FNNSRLSEVMEQNKL 365 (423)
Q Consensus 351 ~~~~~l~~fi~~~~~ 365 (423)
+...++..|++.+.+
T Consensus 238 ffa~dle~FL~e~gl 252 (273)
T KOG3171|consen 238 FFAGDLESFLNEYGL 252 (273)
T ss_pred hhhhhHHHHHHHcCC
Confidence 566778889988544
No 377
>PF13446 RPT: A repeated domain in UCH-protein
Probab=69.52 E-value=4.9 Score=29.16 Aligned_cols=27 Identities=19% Similarity=0.331 Sum_probs=24.6
Q ss_pred ccccccccccCCCCHHHHHHHHHHHHH
Q 014549 37 PSHYDALGIKPYSSVEQVKEAYEKFSS 63 (423)
Q Consensus 37 ~d~y~~lg~~~~a~~~~ik~ayr~l~~ 63 (423)
.+-|+.||++++.+.+.|-.+|+....
T Consensus 5 ~~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 5 EEAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 457999999999999999999999887
No 378
>cd03070 PDI_b_ERp44 PDIb family, ERp44 subfamily, first redox inactive TRX-like domain b; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b domain of ERp44 is likely involved in binding to substrates.
Probab=68.66 E-value=36 Score=26.97 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=41.5
Q ss_pred CCCceEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCC-CcceeEecCCCC
Q 014549 276 GPHKVKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDP-GVKPVVYYGSFN 352 (423)
Q Consensus 276 ~~~~~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~-~~~~~~y~g~~~ 352 (423)
.+.+.++.+|.+......-.++.+|..++++..|.... .+. .....-. .+.+++|++. ......|.|.++
T Consensus 15 ~~kr~iIgYF~~~~~~eY~~f~kvA~~lr~dC~F~v~~-G~~-----~~~~~~~-~~~~i~frp~~~~~~~~y~G~~t 85 (91)
T cd03070 15 RSKRNIIGYFESKDSDEYDNFRKVANILRDDCSFLVGF-GDV-----TKPERPP-GDNIIYFPPGHNAPDMVYLGSLT 85 (91)
T ss_pred cCCceEEEEEcCCCChhHHHHHHHHHHHhhcCeEEEEe-ccc-----cccccCC-CCCeEEECCCCCCCceEEccCCC
Confidence 34556777887654334556788999998888875432 221 1111122 3455666665 444488999885
No 379
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=68.41 E-value=5.3 Score=39.54 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=42.3
Q ss_pred CCHHHHHHHHHHHHHhcCCCCCC-------ChHHHHHHHHHHHHHcCChhhHhhhhhcC
Q 014549 49 SSVEQVKEAYEKFSSKWNSGEEI-------PSTADFLKIQYAYELLTDPLWKRNYDVYG 100 (423)
Q Consensus 49 a~~~~ik~ayr~l~~~~hPd~~~-------~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~ 100 (423)
++..+|+.+|++.+...||++.. ...+.+.++.+||++|++.+.|..+|.+-
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 56778999999999999999753 34556999999999999876666777653
No 380
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=67.39 E-value=4.5 Score=36.12 Aligned_cols=36 Identities=8% Similarity=0.048 Sum_probs=26.7
Q ss_pred EEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 159 QVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 159 ~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
.|..|.|+.|-.+.|.|.++..++.+.+.+-.|-..
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~~i~~~~i~~~ 37 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGNKIEFRFIPGG 37 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-TTEEEEEEE--
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCCcEEEEEEEcc
Confidence 589999999999999999999999987755555443
No 381
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=67.35 E-value=20 Score=26.90 Aligned_cols=36 Identities=33% Similarity=0.536 Sum_probs=25.0
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecC-CCChhHHHHHHH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYG-SFNNSRLSEVME 361 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g-~~~~~~l~~fi~ 361 (423)
+++ .+|||.+.|++++ ++ .+.|.| -.+.+.|..||+
T Consensus 40 ~~~-~~ygv~~vPalvI---ng--~~~~~G~~p~~~el~~~l~ 76 (76)
T PF13192_consen 40 EEI-EKYGVMSVPALVI---NG--KVVFVGRVPSKEELKELLE 76 (76)
T ss_dssp HHH-HHTT-SSSSEEEE---TT--EEEEESS--HHHHHHHHHH
T ss_pred HHH-HHcCCCCCCEEEE---CC--EEEEEecCCCHHHHHHHhC
Confidence 555 9999999999977 33 356788 556788888874
No 382
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=67.33 E-value=20 Score=30.62 Aligned_cols=78 Identities=17% Similarity=0.177 Sum_probs=47.4
Q ss_pred CcEEEEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
..-++.+|+|.||=|..+.... +.. +.|..+.-+ ....+-+++++. ..-++-=|.++ +|.
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~m-------k~~Gf~Vk~~~~~---d~~alK~~~gIp--~e~~SCHT~VI--~Gy----- 85 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHM-------KANGFEVKVVETD---DFLALKRRLGIP--YEMQSCHTAVI--NGY----- 85 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHH-------HhCCcEEEEeecC---cHHHHHHhcCCC--hhhccccEEEE--cCE-----
Confidence 3456789999999996544333 222 466666655 344466777732 22234344332 331
Q ss_pred cccccCCCCHHHHHHHHHHh
Q 014549 233 MTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~~~ 252 (423)
-.+|...+++|..++.+.
T Consensus 86 --~vEGHVPa~aI~~ll~~~ 103 (149)
T COG3019 86 --YVEGHVPAEAIARLLAEK 103 (149)
T ss_pred --EEeccCCHHHHHHHHhCC
Confidence 346888899999998766
No 383
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=66.77 E-value=32 Score=26.73 Aligned_cols=23 Identities=13% Similarity=0.273 Sum_probs=17.5
Q ss_pred HHHHhhcCCCCCCeEEEecCCCc
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~ 342 (423)
..+.+.|++.+.|+++++.+.+.
T Consensus 87 ~~~~~~~~~~~~P~~~l~d~~g~ 109 (116)
T cd02966 87 GELAKAYGVRGLPTTFLIDRDGR 109 (116)
T ss_pred chHHHhcCcCccceEEEECCCCc
Confidence 56788889888999888865443
No 384
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=64.91 E-value=48 Score=32.31 Aligned_cols=99 Identities=9% Similarity=0.196 Sum_probs=57.1
Q ss_pred cccchhhhhhhhhcCCCceEEEEEec---CCCC---C--chHHHHHHHhcccc--------ceEEEEEccccccHHHHhh
Q 014549 262 YTKESMGKNFLAKTGPHKVKVIFFSK---TGER---A--SPFVRQISRNYWAY--------ASFAFVLWREEESSIWWNT 325 (423)
Q Consensus 262 it~~~~~~~fl~~~~~~~~~vl~f~~---~~~~---~--~~~~~~~a~~~~~~--------~~f~~v~~~~~~~~~l~~~ 325 (423)
+++++ +..|+...+.+-..+++|+- +..| . ...+..+|..++.. +-|..|... +.+++.+.
T Consensus 45 ~n~d~-~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~--e~p~~Fq~ 121 (331)
T KOG2603|consen 45 MNDDK-FSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYD--ESPQVFQQ 121 (331)
T ss_pred ecCcc-hhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEecc--ccHHHHHH
Confidence 45544 67777644445556666652 1122 1 23334456544422 334555433 35889999
Q ss_pred cCCCCCCeEEEecCCCcce---eEecC---CCChhHHHHHHHhh
Q 014549 326 FEVESAPAIVFLKDPGVKP---VVYYG---SFNNSRLSEVMEQN 363 (423)
Q Consensus 326 f~v~~~Ptl~lfk~~~~~~---~~y~g---~~~~~~l~~fi~~~ 363 (423)
+++++.|.+++|++....+ ..+++ ....+.+.+|+++.
T Consensus 122 l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~ 165 (331)
T KOG2603|consen 122 LNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADR 165 (331)
T ss_pred hcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHh
Confidence 9999999999996643322 22221 12378888998874
No 385
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=63.53 E-value=39 Score=32.15 Aligned_cols=78 Identities=17% Similarity=0.236 Sum_probs=47.0
Q ss_pred EEEEEecCC---CCCchHHHHHHHhccccceEEEEEccccc---------cHHHHhhcCCCCCCeEEEecCCCcceeE-e
Q 014549 281 KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPVV-Y 347 (423)
Q Consensus 281 ~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~~---------~~~l~~~f~v~~~Ptl~lfk~~~~~~~~-y 347 (423)
+++||.++| ....|.++..+..|. +....|.+.... +..+++++||+..|++++....+.+... -
T Consensus 154 L~fFy~~~C~~C~~~apil~~fa~~yg--i~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~Lv~~~t~~~~pv~ 231 (256)
T TIGR02739 154 LFFFYRGKSPISQKMAPVIQAFAKEYG--ISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYLVNPKSQKMSPLA 231 (256)
T ss_pred EEEEECCCCchhHHHHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEEEECCCCcEEEEe
Confidence 444555432 223566676777663 333444333221 1447899999999999999776554322 2
Q ss_pred cCCCChhHHHHHH
Q 014549 348 YGSFNNSRLSEVM 360 (423)
Q Consensus 348 ~g~~~~~~l~~fi 360 (423)
.|-++.++|.+-|
T Consensus 232 ~G~iS~deL~~Ri 244 (256)
T TIGR02739 232 YGFISQDELKERI 244 (256)
T ss_pred eccCCHHHHHHHH
Confidence 6888888876544
No 386
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=62.01 E-value=56 Score=25.45 Aligned_cols=54 Identities=11% Similarity=0.038 Sum_probs=33.4
Q ss_pred hHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 294 PFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 294 ~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
+.+..++..+ ..+.+..+...+ .++++++|+|.+.|++++ + +. ..+.|..+.++
T Consensus 32 ~~~~~l~~~~-~~i~~~~vd~~~--~~e~a~~~~V~~vPt~vi--d-G~--~~~~G~~~~~e 85 (89)
T cd03026 32 QALNLMAVLN-PNIEHEMIDGAL--FQDEVEERGIMSVPAIFL--N-GE--LFGFGRMTLEE 85 (89)
T ss_pred HHHHHHHHHC-CCceEEEEEhHh--CHHHHHHcCCccCCEEEE--C-CE--EEEeCCCCHHH
Confidence 4455566554 346666665332 367999999999999975 2 22 34457544443
No 387
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=62.00 E-value=28 Score=31.61 Aligned_cols=83 Identities=12% Similarity=0.226 Sum_probs=51.9
Q ss_pred CCceEEEEEecC---CCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCCcceeE--e--c-
Q 014549 277 PHKVKVIFFSKT---GERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPGVKPVV--Y--Y- 348 (423)
Q Consensus 277 ~~~~~vl~f~~~---~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~--y--~- 348 (423)
+.++++-|+.+. |+....-+..+|..+. ..+|..|+... .+-++.+++|.-.|+|++|+++...-.+ | -
T Consensus 84 S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~-eTrFikvnae~--~PFlv~kL~IkVLP~v~l~k~g~~~D~iVGF~dLG 160 (211)
T KOG1672|consen 84 SEKVVCHFYRPEFFRCKIMDKHLEILAKRHV-ETRFIKVNAEK--APFLVTKLNIKVLPTVALFKNGKTVDYVVGFTDLG 160 (211)
T ss_pred CceEEEEEEcCCCcceehHHHHHHHHHHhcc-cceEEEEeccc--CceeeeeeeeeEeeeEEEEEcCEEEEEEeeHhhcC
Confidence 345666676543 3334555677887764 34677776433 3789999999999999999976543211 2 1
Q ss_pred --CCCChhHHHHHHHh
Q 014549 349 --GSFNNSRLSEVMEQ 362 (423)
Q Consensus 349 --g~~~~~~l~~fi~~ 362 (423)
..++.+.|..-|..
T Consensus 161 nkDdF~te~LE~rL~~ 176 (211)
T KOG1672|consen 161 NKDDFTTETLENRLAK 176 (211)
T ss_pred CCCcCcHHHHHHHHhh
Confidence 23556666554443
No 388
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=61.83 E-value=60 Score=28.23 Aligned_cols=80 Identities=16% Similarity=0.222 Sum_probs=47.5
Q ss_pred EEEEEecC-CCC--CchHHHHHHHhccccceEEEEEccccc----------cHHH-Hhhc---CCCCCCeEEEecCCCcc
Q 014549 281 KVIFFSKT-GER--ASPFVRQISRNYWAYASFAFVLWREEE----------SSIW-WNTF---EVESAPAIVFLKDPGVK 343 (423)
Q Consensus 281 ~vl~f~~~-~~~--~~~~~~~~a~~~~~~~~f~~v~~~~~~----------~~~l-~~~f---~v~~~Ptl~lfk~~~~~ 343 (423)
+|.|+++. ..| ..|.+..++.+|. +.+..|+..+.. .... ...| ++...|+.+++...+..
T Consensus 54 lvnFWAsWCppCr~e~P~L~~l~~~~~--~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~G~~ 131 (153)
T TIGR02738 54 LVFFYQSTCPYCHQFAPVLKRFSQQFG--LPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVNTRK 131 (153)
T ss_pred EEEEECCCChhHHHHHHHHHHHHHHcC--CcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCCCCE
Confidence 45555542 223 3566777777663 445455433221 1223 3445 77889999999765443
Q ss_pred e-eEecCCCChhHHHHHHHh
Q 014549 344 P-VVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 344 ~-~~y~g~~~~~~l~~fi~~ 362 (423)
. ..+.|.++.+.+.+.|.+
T Consensus 132 i~~~~~G~~s~~~l~~~I~~ 151 (153)
T TIGR02738 132 AYPVLQGAVDEAELANRMDE 151 (153)
T ss_pred EEEEeecccCHHHHHHHHHH
Confidence 2 346899888888877764
No 389
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=61.24 E-value=24 Score=29.44 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=17.6
Q ss_pred HHHHhhcCCCCCCeEEEecCCC
Q 014549 320 SIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
..+.+.|++.+.|+++++...+
T Consensus 89 ~~~~~~~~v~~iPt~~lid~~G 110 (132)
T cd02964 89 ELLEKQFKVEGIPTLVVLKPDG 110 (132)
T ss_pred HHHHHHcCCCCCCEEEEECCCC
Confidence 4567789999999999996543
No 390
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=60.99 E-value=77 Score=26.50 Aligned_cols=18 Identities=22% Similarity=0.030 Sum_probs=14.5
Q ss_pred hcCCCCCCeEEEecCCCc
Q 014549 325 TFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 325 ~f~v~~~Ptl~lfk~~~~ 342 (423)
.|++.++|+++++...+.
T Consensus 75 ~~~~~G~Pt~vfl~~~G~ 92 (124)
T cd02955 75 MTGQGGWPLNVFLTPDLK 92 (124)
T ss_pred hcCCCCCCEEEEECCCCC
Confidence 468889999999977554
No 391
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=57.83 E-value=37 Score=29.76 Aligned_cols=55 Identities=16% Similarity=0.199 Sum_probs=42.6
Q ss_pred CCcEEEEEec-CCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCC
Q 014549 153 SKPWLIQVYS-DGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKP 207 (423)
Q Consensus 153 ~~~~lV~FYa-pwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~ 207 (423)
++.+++.||. .+++-|..=+-.|++.-.+++.. +.+.-|.-+....+...+++++
T Consensus 30 Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~ 86 (157)
T COG1225 30 GKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHG 86 (157)
T ss_pred CCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhC
Confidence 4588889995 68888988888888888888775 5666677665556777888887
No 392
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=55.59 E-value=17 Score=38.38 Aligned_cols=49 Identities=16% Similarity=0.320 Sum_probs=40.2
Q ss_pred cccccHHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 315 REEESSIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 315 ~~~~~~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
.+.+..++.++||+-+.|++++|..++.++....|.++.+.+.++++..
T Consensus 519 ~~p~~~~lLk~~~~~G~P~~~ff~~~g~e~~~l~gf~~a~~~~~~l~~~ 567 (569)
T COG4232 519 NDPAITALLKRLGVFGVPTYLFFGPQGSEPEILTGFLTADAFLEHLERA 567 (569)
T ss_pred CCHHHHHHHHHcCCCCCCEEEEECCCCCcCcCCcceecHHHHHHHHHHh
Confidence 3444578899999999999999997777776678999999999998763
No 393
>PHA02125 thioredoxin-like protein
Probab=54.19 E-value=78 Score=23.44 Aligned_cols=17 Identities=18% Similarity=0.227 Sum_probs=15.4
Q ss_pred cHHHHhhcCCCCCCeEE
Q 014549 319 SSIWWNTFEVESAPAIV 335 (423)
Q Consensus 319 ~~~l~~~f~v~~~Ptl~ 335 (423)
..+++++|+|.+.||++
T Consensus 35 ~~~l~~~~~v~~~PT~~ 51 (75)
T PHA02125 35 GVELTAKHHIRSLPTLV 51 (75)
T ss_pred CHHHHHHcCCceeCeEE
Confidence 47899999999999987
No 394
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=53.29 E-value=65 Score=26.32 Aligned_cols=36 Identities=11% Similarity=0.097 Sum_probs=24.9
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSR 355 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~ 355 (423)
..++..|++...|+.+++.+.+.....+.|.++.+.
T Consensus 90 ~~~~~~~~v~~~P~~~~ld~~G~v~~~~~G~~~~~~ 125 (127)
T cd03010 90 GRVGIDLGVYGVPETFLIDGDGIIRYKHVGPLTPEV 125 (127)
T ss_pred chHHHhcCCCCCCeEEEECCCceEEEEEeccCChHh
Confidence 467888999999977776544544455678776554
No 395
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=52.91 E-value=67 Score=30.42 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=41.9
Q ss_pred CchHHHHHHHhccccceEEEEEccccc---------cHHHHhhcCCCCCCeEEEecCCCccee-EecCCCChhHHHHHHH
Q 014549 292 ASPFVRQISRNYWAYASFAFVLWREEE---------SSIWWNTFEVESAPAIVFLKDPGVKPV-VYYGSFNNSRLSEVME 361 (423)
Q Consensus 292 ~~~~~~~~a~~~~~~~~f~~v~~~~~~---------~~~l~~~f~v~~~Ptl~lfk~~~~~~~-~y~g~~~~~~l~~fi~ 361 (423)
..|.++..+..|. ..+.-|...... ....++++||+.+|++++....+.+.. +-.|-++.++|.+-|-
T Consensus 161 ~aPil~~fa~~yg--~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv~~~t~~~~pv~~G~iS~deL~~Ri~ 238 (248)
T PRK13703 161 LAQVINDFRDTYG--LSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLVDPKSGSVRPLSYGFITQDDLAKRFL 238 (248)
T ss_pred HHHHHHHHHHHhC--CeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEEECCCCcEEEEeeccCCHHHHHHHHH
Confidence 3566777777663 233333332110 123567999999999999977654432 2368888888865443
No 396
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=50.83 E-value=27 Score=30.73 Aligned_cols=44 Identities=20% Similarity=0.140 Sum_probs=33.2
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
..+.+.|++.+.|+.+++.+++.....+.|..+.+.+.+++.+.
T Consensus 127 ~~~~~~~~v~~~P~~~~id~~G~i~~~~~G~~~~~~l~~~l~~~ 170 (173)
T TIGR00385 127 GKLGLDLGVYGAPETFLVDGNGVILYRHAGPLNNEVWTEGFLPA 170 (173)
T ss_pred CchHHhcCCeeCCeEEEEcCCceEEEEEeccCCHHHHHHHHHHH
Confidence 45788899989997777755555445567888989999888764
No 397
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=49.73 E-value=31 Score=28.44 Aligned_cols=43 Identities=9% Similarity=-0.020 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHHhcCCCCCC---C----hHHHHHHHHHHHHHcCC
Q 014549 47 PYSSVEQVKEAYEKFSSKWNSGEEI---P----STADFLKIQYAYELLTD 89 (423)
Q Consensus 47 ~~a~~~~ik~ayr~l~~~~hPd~~~---~----~~~~f~~i~~Ay~~L~~ 89 (423)
+..+..++|.|.|.+-++.|||.-. . ..+-++.|+.-.+.|..
T Consensus 4 r~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~ 53 (112)
T PF14687_consen 4 RNLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKK 53 (112)
T ss_pred hhhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhc
Confidence 4556788999999999999999532 1 23336666666665553
No 398
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=48.83 E-value=1.5e+02 Score=26.64 Aligned_cols=80 Identities=13% Similarity=0.212 Sum_probs=49.0
Q ss_pred EEEEEecCC---CCCchHHHHHHHhccccceEEEEEcccc-----------ccHHHHhhcCC--CCCCeEEEecCCCcce
Q 014549 281 KVIFFSKTG---ERASPFVRQISRNYWAYASFAFVLWREE-----------ESSIWWNTFEV--ESAPAIVFLKDPGVKP 344 (423)
Q Consensus 281 ~vl~f~~~~---~~~~~~~~~~a~~~~~~~~f~~v~~~~~-----------~~~~l~~~f~v--~~~Ptl~lfk~~~~~~ 344 (423)
+|.|+.+.| ....|.++.++.+|. +.+..|...+. ....+.+.|++ ...|+.+++...+...
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~g--~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~ 150 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQYG--FSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEA 150 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHcC--CEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEE
Confidence 445665432 223456666776662 34433433222 12346778985 5799999997666553
Q ss_pred -eEecCCCChhHHHHHHHh
Q 014549 345 -VVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 345 -~~y~g~~~~~~l~~fi~~ 362 (423)
..+.|..+.+.|.+.|.+
T Consensus 151 ~~~~~G~~~~~~L~~~I~~ 169 (181)
T PRK13728 151 LPLLQGATDAAGFMARMDT 169 (181)
T ss_pred EEEEECCCCHHHHHHHHHH
Confidence 357899998888777766
No 399
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=48.55 E-value=80 Score=26.62 Aligned_cols=67 Identities=12% Similarity=0.254 Sum_probs=39.5
Q ss_pred CCceEEEEEecCCC--CC--chHHHHHHHhccccceEEEEEccccc-cHHHHhhcCCCCCCeEEEecCCCcceeE
Q 014549 277 PHKVKVIFFSKTGE--RA--SPFVRQISRNYWAYASFAFVLWREEE-SSIWWNTFEVESAPAIVFLKDPGVKPVV 346 (423)
Q Consensus 277 ~~~~~vl~f~~~~~--~~--~~~~~~~a~~~~~~~~f~~v~~~~~~-~~~l~~~f~v~~~Ptl~lfk~~~~~~~~ 346 (423)
..+++|+=|+.+.+ |. ...+...|....++ +.+...+.+ .+++.+.|++...|++++|-++..-.+.
T Consensus 22 ~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf---a~IylvdideV~~~~~~~~l~~p~tvmfFfn~kHmkiD 93 (142)
T KOG3414|consen 22 EERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF---AVIYLVDIDEVPDFVKMYELYDPPTVMFFFNNKHMKID 93 (142)
T ss_pred cceEEEEEecCCCCchHhhHHHHHHHHHHHHhhc---eEEEEEecchhhhhhhhhcccCCceEEEEEcCceEEEe
Confidence 45678888875432 11 12333345554444 444433443 3889999999999999888654433333
No 400
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=48.38 E-value=1.1e+02 Score=23.46 Aligned_cols=58 Identities=16% Similarity=0.300 Sum_probs=33.7
Q ss_pred eEEEEEecCCCCCchHHHHHHHhccccceEEEEEccccccHHHHhhcCCCCCCeEEEecCCC
Q 014549 280 VKVIFFSKTGERASPFVRQISRNYWAYASFAFVLWREEESSIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 280 ~~vl~f~~~~~~~~~~~~~~a~~~~~~~~f~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
..+++.+-+. ....++....++ ...+..+...+.....+.+.|+|...|+++++.+++
T Consensus 36 v~~v~Vs~d~--~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~i~~iP~~~lld~~G 93 (95)
T PF13905_consen 36 VEFVFVSLDE--DEEEWKKFLKKN--NFPWYNVPFDDDNNSELLKKYGINGIPTLVLLDPDG 93 (95)
T ss_dssp EEEEEEE-SS--SHHHHHHHHHTC--TTSSEEEETTTHHHHHHHHHTT-TSSSEEEEEETTS
T ss_pred EEEEEEEeCC--CHHHHHHHHHhc--CCCceEEeeCcchHHHHHHHCCCCcCCEEEEECCCC
Confidence 5555555321 233343333332 234556655554457899999999999999986543
No 401
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=48.34 E-value=89 Score=36.16 Aligned_cols=44 Identities=18% Similarity=0.291 Sum_probs=34.3
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
..+.+.|+|.+.|+.+++...+.....+.|+...+.|.++|...
T Consensus 492 ~~~~~~~~V~~iPt~ilid~~G~iv~~~~G~~~~~~l~~~l~~~ 535 (1057)
T PLN02919 492 MYLWRELGVSSWPTFAVVSPNGKLIAQLSGEGHRKDLDDLVEAA 535 (1057)
T ss_pred hHHHHhcCCCccceEEEECCCCeEEEEEecccCHHHHHHHHHHH
Confidence 35678899999999999965555444567888888888888875
No 402
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=44.77 E-value=30 Score=29.56 Aligned_cols=36 Identities=17% Similarity=0.337 Sum_probs=27.3
Q ss_pred HHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHH
Q 014549 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFAT 251 (423)
Q Consensus 201 ~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~ 251 (423)
..+++.+ |.+.||+++ +|. .+.|..+.++|.+.|.+
T Consensus 127 ~~~~~~~------i~~tPt~~i--nG~-------~~~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 127 QLARQLG------ITGTPTFFI--NGK-------YVVGPYTIEELKELIDK 162 (162)
T ss_dssp HHHHHHT-------SSSSEEEE--TTC-------EEETTTSHHHHHHHHHH
T ss_pred HHHHHcC------CccccEEEE--CCE-------EeCCCCCHHHHHHHHcC
Confidence 3667778 999999988 553 46788999999988753
No 403
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=43.19 E-value=73 Score=25.29 Aligned_cols=42 Identities=17% Similarity=0.258 Sum_probs=22.3
Q ss_pred chHHHHHHHhccccceEEEEEcccccc-HHHHhhcCCCCCCeE
Q 014549 293 SPFVRQISRNYWAYASFAFVLWREEES-SIWWNTFEVESAPAI 334 (423)
Q Consensus 293 ~~~~~~~a~~~~~~~~f~~v~~~~~~~-~~l~~~f~v~~~Ptl 334 (423)
.+.+..++..+...+.+..+...+.+. ..+++++++..+|++
T Consensus 40 ~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~ 82 (114)
T cd02967 40 LPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYV 82 (114)
T ss_pred hHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEE
Confidence 455555665554445554442122222 456777777667754
No 404
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=42.56 E-value=1.1e+02 Score=24.13 Aligned_cols=73 Identities=19% Similarity=0.136 Sum_probs=45.2
Q ss_pred CCcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCC
Q 014549 153 SKPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDC 232 (423)
Q Consensus 153 ~~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~ 232 (423)
+.+.++.|..+. ..|..+....+++|..- +.++ +..... -...|++.+..+|...
T Consensus 19 ~pV~l~~f~~~~-~~~~e~~~ll~e~a~lS-dkI~-----~~~~~~---------------~~~~P~~~i~~~~~~~--- 73 (94)
T cd02974 19 NPVELVASLDDS-EKSAELLELLEEIASLS-DKIT-----LEEDND---------------DERKPSFSINRPGEDT--- 73 (94)
T ss_pred CCEEEEEEeCCC-cchHHHHHHHHHHHHhC-CceE-----EEEecC---------------CCCCCEEEEecCCCcc---
Confidence 344556666655 88888887777777653 2232 221110 1146999998777432
Q ss_pred cccccCCCCHHHHHHHHH
Q 014549 233 MTRFEGELSVDAVTDWFA 250 (423)
Q Consensus 233 ~~~y~G~~~~~~l~~fi~ 250 (423)
..+|.|-..=..+-.|+.
T Consensus 74 gIrF~GiP~GhEf~Slil 91 (94)
T cd02974 74 GIRFAGIPMGHEFTSLVL 91 (94)
T ss_pred cEEEEecCCchhHHHHHH
Confidence 578988777677777764
No 405
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=41.67 E-value=52 Score=29.35 Aligned_cols=42 Identities=14% Similarity=0.172 Sum_probs=31.9
Q ss_pred HHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 321 IWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 321 ~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
.+...|++.+.|+.+++...+.....+.|.++.+.|.++|..
T Consensus 133 ~~~~~~gv~~~P~t~vid~~G~i~~~~~G~~~~~~l~~~i~~ 174 (185)
T PRK15412 133 MLGLDLGVYGAPETFLIDGNGIIRYRHAGDLNPRVWESEIKP 174 (185)
T ss_pred cHHHhcCCCcCCeEEEECCCceEEEEEecCCCHHHHHHHHHH
Confidence 466788999999877776555555566899998888888776
No 406
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=40.94 E-value=59 Score=28.16 Aligned_cols=57 Identities=9% Similarity=0.013 Sum_probs=32.4
Q ss_pred EEEEecC------CCccccccHHHHHHHHHHhhccceEEEEEcccchh-hhHHHhhCCCCccccccCccEEE
Q 014549 157 LIQVYSD------GSYLCGQFSGAWKTIAALLEGIANTGMVELGDIRL-ATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 157 lV~FYap------wC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~-~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
+|.|.++ +|++|++....++.. .+.+-.+|.+.++. ..+|-+..+.. -.-..+|.|.
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~------~V~~~e~DVs~~~~~~~EL~~~~g~~--~~~~tvPqVF 65 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF------RVKFDERDVSMDSGFREELRELLGAE--LKAVSLPRVF 65 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC------CCcEEEEECCCCHHHHHHHHHHhCCC--CCCCCCCEEE
Confidence 3555666 899998887666543 26778888874433 22344443410 0014677654
No 407
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=40.90 E-value=97 Score=25.41 Aligned_cols=45 Identities=20% Similarity=0.217 Sum_probs=32.3
Q ss_pred ccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCC
Q 014549 170 QFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPP 225 (423)
Q Consensus 170 ~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~ 225 (423)
.+.+.+..+.+.+...-..+.|..+ +.+-++|+ |+.+||+++-.+
T Consensus 36 ~~~~t~~~~~~l~~~~~~~~~v~Id-----P~~F~~y~------I~~VPa~V~~~~ 80 (113)
T PF09673_consen 36 SFKPTAKAIQELLRKDDPCPGVQID-----PRLFRQYN------ITAVPAFVVVKD 80 (113)
T ss_pred CHHHHHHHHHHHhhccCCCcceeEC-----hhHHhhCC------ceEcCEEEEEcC
Confidence 6777777777766554333344433 45889999 999999999887
No 408
>PF07739 TipAS: TipAS antibiotic-recognition domain; InterPro: IPR012925 TipAL is a bacterial transcriptional regulator of the MerR family. The tipA gene can be expressed as a long form, TipAL, and a short form, TipAS, which constitutes the C-terminal part of TipAL. TipAS forms the antibiotic-recognition domain []. This domain, which has an alpha-helical globin-like fold, is also found at the C terminus of other MerR family transcription factors, including Mta, a central regulator of multidrug resistance in Bacillus subtilis [], and SkgA from Caulobacter crescentus []. ; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 1NY9_A 3HH0_A 3QAO_A.
Probab=37.73 E-value=78 Score=25.56 Aligned_cols=53 Identities=19% Similarity=0.428 Sum_probs=35.0
Q ss_pred cccCCCCH-HHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcCChhhHhhhh-hcCCc
Q 014549 44 GIKPYSSV-EQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLTDPLWKRNYD-VYGID 102 (423)
Q Consensus 44 g~~~~a~~-~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd-~~~~~ 102 (423)
|++|+... .++-+.++.+...+++ ++.+.+..|.+.| +.||.-+..|| .++..
T Consensus 51 g~~p~s~evq~l~~~~~~~~~~~~~----~~~~~~~~l~~~y--~~~~~~~~~~~~~~~~~ 105 (118)
T PF07739_consen 51 GVDPDSPEVQELAERWMELINQFTG----GDPELLRGLAQMY--VEDPRFAAMYDKKFGPG 105 (118)
T ss_dssp T--TT-HHHHHHHHHHHHHHHHSS-------HHHHHHHHHHT--TSTHHHHHHHG-GGSTT
T ss_pred CCCcCCHHHHHHHHHHHHHHHHHhC----CCHHHHHHHHHHH--HcCHHHHhhccccCCHH
Confidence 44454443 3377778888877776 4566888888888 78899999998 66553
No 409
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=37.27 E-value=68 Score=22.14 Aligned_cols=18 Identities=22% Similarity=0.015 Sum_probs=13.1
Q ss_pred EEecCCCccccccHHHHH
Q 014549 159 QVYSDGSYLCGQFSGAWK 176 (423)
Q Consensus 159 ~FYapwC~~C~~~~p~~~ 176 (423)
.|+.++|+.|.+..-..+
T Consensus 3 ly~~~~~~~~~~~~~~l~ 20 (71)
T cd00570 3 LYYFPGSPRSLRVRLALE 20 (71)
T ss_pred EEeCCCCccHHHHHHHHH
Confidence 567899999987664443
No 410
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=37.10 E-value=1.5e+02 Score=21.82 Aligned_cols=73 Identities=12% Similarity=0.145 Sum_probs=37.1
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF 236 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y 236 (423)
..++.++|+.|.+..-..++. | +.+-.++..... ...++-+..+ -.++|+++.-.+|.. .+
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----g-i~y~~~~v~~~~~~~~~~~~~~p------~~~vP~l~~~~~~~~------l~ 64 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----E-LDVILYPCPKGSPKRDKFLEKGG------KVQVPYLVDPNTGVQ------MF 64 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----C-CcEEEEECCCChHHHHHHHHhCC------CCcccEEEeCCCCeE------EE
Confidence 345668999998655333222 2 233334544221 1223333334 458899854222211 23
Q ss_pred cCCCCHHHHHHHHHHh
Q 014549 237 EGELSVDAVTDWFATA 252 (423)
Q Consensus 237 ~G~~~~~~l~~fi~~~ 252 (423)
....|++|+.+.
T Consensus 65 ----es~~I~~yL~~~ 76 (77)
T cd03041 65 ----ESADIVKYLFKT 76 (77)
T ss_pred ----cHHHHHHHHHHh
Confidence 367788888654
No 411
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=36.49 E-value=85 Score=22.74 Aligned_cols=51 Identities=22% Similarity=0.177 Sum_probs=28.5
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccEEE
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLV 221 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~ 221 (423)
+.|+.+||+.|.+..-..++ +|. ..+..||-.. ...++.+..+ ...+|++.
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~-----~gl~~e~~~v~~~~--~~~~~~~~np------~~~vP~L~ 53 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLL-----AGITVELREVELKN--KPAEMLAASP------KGTVPVLV 53 (71)
T ss_pred EEEecCCCcHHHHHHHHHHH-----cCCCcEEEEeCCCC--CCHHHHHHCC------CCCCCEEE
Confidence 35678999999776533322 232 3444555431 1233444445 55889985
No 412
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=36.37 E-value=42 Score=29.68 Aligned_cols=27 Identities=11% Similarity=0.028 Sum_probs=24.2
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhh
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLE 183 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~ 183 (423)
+..|+.+.|+.|-...+.++++++.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567888999999999999999999984
No 413
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=35.95 E-value=54 Score=27.41 Aligned_cols=35 Identities=17% Similarity=0.305 Sum_probs=26.4
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
..+++++| |.++||+++ +|. .+.|..+.+.|.+.+
T Consensus 119 ~~~~~~~g------i~gtPt~~v--~g~-------~~~G~~~~~~l~~~i 153 (154)
T cd03023 119 RQLARALG------ITGTPAFII--GDT-------VIPGAVPADTLKEAI 153 (154)
T ss_pred HHHHHHcC------CCcCCeEEE--CCE-------EecCCCCHHHHHHHh
Confidence 34678888 999999877 342 578988888887764
No 414
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=35.79 E-value=94 Score=22.85 Aligned_cols=68 Identities=18% Similarity=0.178 Sum_probs=41.9
Q ss_pred EecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccC
Q 014549 160 VYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEG 238 (423)
Q Consensus 160 FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G 238 (423)
++.++|+.|++.. ++-.++|. ..+-.++..+. ...+.+..+ -..+|++. .+|.. .+
T Consensus 2 y~~~~Sp~~~kv~-----~~l~~~~i~~~~~~v~~~~~--~~~~~~~~p------~~~vPvL~--~~g~~------l~-- 58 (75)
T PF13417_consen 2 YGFPGSPYSQKVR-----LALEEKGIPYELVPVDPEEK--RPEFLKLNP------KGKVPVLV--DDGEV------LT-- 58 (75)
T ss_dssp EEETTSHHHHHHH-----HHHHHHTEEEEEEEEBTTST--SHHHHHHST------TSBSSEEE--ETTEE------EE--
T ss_pred CCcCCChHHHHHH-----HHHHHcCCeEEEeccCcccc--hhHHHhhcc------cccceEEE--ECCEE------Ee--
Confidence 5778999997755 23333443 45555554432 344555555 55899987 34432 22
Q ss_pred CCCHHHHHHHHHHh
Q 014549 239 ELSVDAVTDWFATA 252 (423)
Q Consensus 239 ~~~~~~l~~fi~~~ 252 (423)
+...|++|+.+.
T Consensus 59 --dS~~I~~yL~~~ 70 (75)
T PF13417_consen 59 --DSAAIIEYLEER 70 (75)
T ss_dssp --SHHHHHHHHHHH
T ss_pred --CHHHHHHHHHHH
Confidence 577899999887
No 415
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=35.77 E-value=30 Score=30.81 Aligned_cols=38 Identities=26% Similarity=0.350 Sum_probs=15.2
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHH
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAV 245 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l 245 (423)
..++++++ |+++||+++|..... +.....+|..+.+.+
T Consensus 137 ~~la~~m~------I~~~Ptlvi~~~~~~--~~g~~i~g~~~~~~~ 174 (176)
T PF13743_consen 137 QQLAREMG------ITGFPTLVIFNENNE--EYGILIEGYYSYEVY 174 (176)
T ss_dssp HHHHHHTT-------SSSSEEEEE----------------------
T ss_pred HHHHHHcC------CCCCCEEEEEecccc--ccccccccccccccc
Confidence 45889998 999999999983321 113345565554433
No 416
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=34.20 E-value=1.3e+02 Score=25.40 Aligned_cols=70 Identities=14% Similarity=0.218 Sum_probs=41.0
Q ss_pred cHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCC----CCCCcccc---cCCCCHH
Q 014549 171 FSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCK----SSDCMTRF---EGELSVD 243 (423)
Q Consensus 171 ~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~----~~~~~~~y---~G~~~~~ 243 (423)
+.+....+.+....... +.|..+ +.+-++|+ |+.+|++++..++.. .+..+..| .|..+.+
T Consensus 38 ~~~T~~~i~~L~~~~~~-~~v~Id-----P~lF~~f~------I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gdvsl~ 105 (130)
T TIGR02742 38 FKATATRIQSLIKDGGK-SGVQID-----PQWFKQFD------ITAVPAFVVVKDGLACLPEQPCPESDYDVVYGNVSLK 105 (130)
T ss_pred HHHHHHHHHHHHhcCCC-CcEEEC-----hHHHhhcC------ceEcCEEEEECCCCcccccCCCCCCCeeEEEecccHH
Confidence 55555555554433222 233333 45889999 999999999988740 00011233 4888877
Q ss_pred HHHHHHHHh
Q 014549 244 AVTDWFATA 252 (423)
Q Consensus 244 ~l~~fi~~~ 252 (423)
.-.+.+.+.
T Consensus 106 ~ALe~ia~~ 114 (130)
T TIGR02742 106 GALEKMAQD 114 (130)
T ss_pred HHHHHHHHh
Confidence 766666544
No 417
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=34.05 E-value=64 Score=28.42 Aligned_cols=36 Identities=31% Similarity=0.368 Sum_probs=27.7
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
...+.++| |.|+||+++ +|+. .+.|....+.|.+.+
T Consensus 157 ~~~a~~~g------v~GvP~~vv--~g~~------~~~G~~~~~~l~~~l 192 (193)
T PF01323_consen 157 TAEARQLG------VFGVPTFVV--NGKY------RFFGADRLDELEDAL 192 (193)
T ss_dssp HHHHHHTT------CSSSSEEEE--TTTE------EEESCSSHHHHHHHH
T ss_pred HHHHHHcC------CcccCEEEE--CCEE------EEECCCCHHHHHHHh
Confidence 44678888 999999999 5542 678988888887765
No 418
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=33.86 E-value=22 Score=28.52 Aligned_cols=31 Identities=0% Similarity=-0.243 Sum_probs=19.9
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
..|+.|+|+.|++.....++. .+.+-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~------~i~~~~idi~ 32 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH------GIEYEFIDYL 32 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc------CCCcEEEeec
Confidence 467899999998876444332 2455556654
No 419
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=32.95 E-value=28 Score=17.34 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHcC
Q 014549 76 DFLKIQYAYELLT 88 (423)
Q Consensus 76 ~f~~i~~Ay~~L~ 88 (423)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4677888888764
No 420
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=32.27 E-value=56 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.299 Sum_probs=30.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHhh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQN 363 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~~ 363 (423)
..+++++||++.|+++ |.++. ...|..+.+.|.++|+..
T Consensus 192 ~~la~~lgi~gTPtiv-~~~G~----~~~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 192 YALGVQFGVQGTPAIV-LSNGT----LVPGYQGPKEMKAFLDEH 230 (232)
T ss_pred HHHHHHcCCccccEEE-EcCCe----EeeCCCCHHHHHHHHHHc
Confidence 5789999999999998 54432 237888899999999863
No 421
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=31.58 E-value=1e+02 Score=28.62 Aligned_cols=37 Identities=14% Similarity=0.233 Sum_probs=28.8
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
..+...+|+.+.|++++- +. .+.|..+...|.+.|..
T Consensus 205 ~~~a~~~gv~gTPt~~v~---~~---~~~g~~~~~~l~~~i~~ 241 (244)
T COG1651 205 YKLAQQLGVNGTPTFIVN---GK---LVPGLPDLDELKAIIDE 241 (244)
T ss_pred HHHHHhcCCCcCCeEEEC---Ce---eecCCCCHHHHHHHHHH
Confidence 468899999999999884 22 55787777888887765
No 422
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=30.26 E-value=1.3e+02 Score=26.46 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=25.0
Q ss_pred EEEEccccccHHHHhhcCCCCCCeEEEecCCCc
Q 014549 310 AFVLWREEESSIWWNTFEVESAPAIVFLKDPGV 342 (423)
Q Consensus 310 ~~v~~~~~~~~~l~~~f~v~~~Ptl~lfk~~~~ 342 (423)
..+...+...+++.++|+|.+.|++++.++.++
T Consensus 95 ~~iPf~d~~~~~l~~ky~v~~iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 95 LAIPFGDDLIQKLSEKYEVKGIPALVILKPDGT 127 (157)
T ss_pred EEecCCCHHHHHHHHhcccCcCceeEEecCCCC
Confidence 344445554578999999999999999987654
No 423
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=29.78 E-value=27 Score=28.22 Aligned_cols=16 Identities=0% Similarity=-0.317 Sum_probs=12.6
Q ss_pred EEEecCCCccccccHH
Q 014549 158 IQVYSDGSYLCGQFSG 173 (423)
Q Consensus 158 V~FYapwC~~C~~~~p 173 (423)
..|+.|+|+.|++...
T Consensus 2 ~iy~~~~C~~crka~~ 17 (105)
T cd03035 2 TLYGIKNCDTVKKARK 17 (105)
T ss_pred EEEeCCCCHHHHHHHH
Confidence 4678899999988553
No 424
>cd03062 TRX_Fd_Sucrase TRX-like [2Fe-2S] Ferredoxin (Fd) family, Sucrase subfamily; composed of proteins with similarity to a novel plant enzyme, isolated from potato, which contains a Fd-like domain and exhibits sucrolytic activity. The putative active site of the Fd-like domain of the enzyme contains two cysteines and two histidines for possible binding to iron-sulfur clusters, compared to four cysteines present in the active site of Fd.
Probab=28.01 E-value=2.4e+02 Score=22.29 Aligned_cols=62 Identities=15% Similarity=0.174 Sum_probs=41.3
Q ss_pred CCCccccccHHHHHHHHHHhhc----cceEEEEEcccchhhhHHHhhCCCCccccccCc-cEEEEeC--CCCCCCCCccc
Q 014549 163 DGSYLCGQFSGAWKTIAALLEG----IANTGMVELGDIRLATHLAERKPIGQIFFRRGL-PSLVAFP--PGCKSSDCMTR 235 (423)
Q Consensus 163 pwC~~C~~~~p~~~~~A~~l~~----~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~-Pti~~f~--~g~~~~~~~~~ 235 (423)
..|+.+- .+.++.+.+.+.. .+.+....|- | .-.+ |++++|+ .| .
T Consensus 14 ~~C~~~g--~~l~~~l~~~l~~~~~~~v~v~~~~cl------------G------~c~~gp~vvvyP~~~g--------~ 65 (97)
T cd03062 14 KRCGICG--PPLAAELRAELPEHGPGGVRVWEVSHV------------G------GHKFAGNVIIYPKGDG--------I 65 (97)
T ss_pred cChhhcC--HHHHHHHHHHHHHhCCCceEEEeCCcC------------C------ccCcCCEEEEEeCCCe--------e
Confidence 3565553 4678888777763 2556666665 2 2233 9999999 55 4
Q ss_pred ccCCCCHHHHHHHHHHh
Q 014549 236 FEGELSVDAVTDWFATA 252 (423)
Q Consensus 236 y~G~~~~~~l~~fi~~~ 252 (423)
+.|..+++++...+.+.
T Consensus 66 wy~~v~p~~v~~Iv~~h 82 (97)
T cd03062 66 WYGRVTPEHVPPIVDRL 82 (97)
T ss_pred EEeecCHHHHHHHHHHH
Confidence 55778888888888776
No 425
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=27.53 E-value=1.2e+02 Score=25.77 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=20.0
Q ss_pred cHHHHhhcCCCCCCeEEEecCCC
Q 014549 319 SSIWWNTFEVESAPAIVFLKDPG 341 (423)
Q Consensus 319 ~~~l~~~f~v~~~Ptl~lfk~~~ 341 (423)
++.+.++|+|+..|++++.+++.
T Consensus 60 dP~lF~~f~I~~VPa~V~~~~~~ 82 (130)
T TIGR02742 60 DPQWFKQFDITAVPAFVVVKDGL 82 (130)
T ss_pred ChHHHhhcCceEcCEEEEECCCC
Confidence 36799999999999999998753
No 426
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=26.95 E-value=68 Score=19.25 Aligned_cols=17 Identities=6% Similarity=0.176 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHhcCC
Q 014549 51 VEQVKEAYEKFSSKWNS 67 (423)
Q Consensus 51 ~~~ik~ayr~l~~~~hP 67 (423)
.++.|.+.|+.|+.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 36789999999999993
No 427
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=1.9e+02 Score=21.89 Aligned_cols=31 Identities=16% Similarity=0.217 Sum_probs=25.2
Q ss_pred cccccccccccCCCCHHHHHHHHHHHHHhcC
Q 014549 36 PPSHYDALGIKPYSSVEQVKEAYEKFSSKWN 66 (423)
Q Consensus 36 ~~d~y~~lg~~~~a~~~~ik~ayr~l~~~~h 66 (423)
+.+.-+++|++|-++..||+.|-++.+++..
T Consensus 2 CRNIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 2 CRNIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred ccchHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 4566788999999999999999877766653
No 428
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=25.70 E-value=58 Score=28.67 Aligned_cols=28 Identities=11% Similarity=-0.026 Sum_probs=25.0
Q ss_pred EEEEecCCCccccccHHHHHHHHHHhhc
Q 014549 157 LIQVYSDGSYLCGQFSGAWKTIAALLEG 184 (423)
Q Consensus 157 lV~FYapwC~~C~~~~p~~~~~A~~l~~ 184 (423)
+..||..-|++|-...+.++++.+...+
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~ 29 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPD 29 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcC
Confidence 6788999999999999999999999844
No 429
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=25.50 E-value=3.8e+02 Score=22.00 Aligned_cols=42 Identities=7% Similarity=0.188 Sum_probs=30.9
Q ss_pred HHHhhcCCCC-CCeEEEecCCCcceeEecCCCChhHHHHHHHh
Q 014549 321 IWWNTFEVES-APAIVFLKDPGVKPVVYYGSFNNSRLSEVMEQ 362 (423)
Q Consensus 321 ~l~~~f~v~~-~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi~~ 362 (423)
.+.++|++.. .-++++.-..+.....+..+.+.+.|.+.|..
T Consensus 68 ~lr~~l~~~~~~f~~vLiGKDG~vK~r~~~p~~~~~lf~~ID~ 110 (118)
T PF13778_consen 68 ALRKRLRIPPGGFTVVLIGKDGGVKLRWPEPIDPEELFDTIDA 110 (118)
T ss_pred HHHHHhCCCCCceEEEEEeCCCcEEEecCCCCCHHHHHHHHhC
Confidence 7899999874 34566664445555667888999999998876
No 430
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=24.74 E-value=77 Score=28.44 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=26.7
Q ss_pred HHHHhhcCCCCCCeEEEecCCCcceeEecCCCChhHHHHHH
Q 014549 320 SIWWNTFEVESAPAIVFLKDPGVKPVVYYGSFNNSRLSEVM 360 (423)
Q Consensus 320 ~~l~~~f~v~~~Ptl~lfk~~~~~~~~y~g~~~~~~l~~fi 360 (423)
..+++.+||.+.|+++ |+++. ...|..+.+.|.+||
T Consensus 162 ~~l~~~~gi~gtPtii-~~~G~----~~~G~~~~~~l~~~L 197 (197)
T cd03020 162 LALGRQLGVNGTPTIV-LADGR----VVPGAPPAAQLEALL 197 (197)
T ss_pred HHHHHHcCCCcccEEE-ECCCe----EecCCCCHHHHHhhC
Confidence 5789999999999997 65432 236777777777664
No 431
>TIGR03044 PS_II_psb27 photosystem II protein Psb27. Members of this family are the Psb27 protein of the cyanobacterial photosynthetic supracomplex, photosystem II. Although most protein components of both cyanobacterial and chloroplast versions of photosystem II are closely related and described together by single model families, this family is strictly bacterial. Some uncharacterized proteins with highly divergent sequences, from Arabidopsis, score between trusted and noise cutoffs for this model but are not at this time assigned as functionally equivalent photosystem II proteins.
Probab=23.90 E-value=3.8e+02 Score=22.88 Aligned_cols=48 Identities=13% Similarity=0.286 Sum_probs=29.5
Q ss_pred ccccccCCCC-----HHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHcC
Q 014549 41 DALGIKPYSS-----VEQVKEAYEKFSSKWNSGEEIPSTADFLKIQYAYELLT 88 (423)
Q Consensus 41 ~~lg~~~~a~-----~~~ik~ayr~l~~~~hPd~~~~~~~~f~~i~~Ay~~L~ 88 (423)
..|.++.+.. +++.|+.-+..+-+|+|+..-....-|..++.|...|.
T Consensus 50 ~~i~lpkd~p~~~~a~~~ar~~indyvsrYRr~~~v~g~~SFttm~TALNsLA 102 (135)
T TIGR03044 50 EAIDLPDDDPNKSEAQAEARQLINDYISRYRRRPRVNGLSSFTTMQTALNSLA 102 (135)
T ss_pred HHHcCCCCCccHHHHHHHHHHHHHHHHHHhcCCCCcCCcccHHHHHHHHHHHH
Confidence 4566665432 33355555666677888865444556777777777664
No 432
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=23.83 E-value=1.5e+02 Score=27.65 Aligned_cols=38 Identities=24% Similarity=0.310 Sum_probs=29.4
Q ss_pred HHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHHHHh
Q 014549 201 HLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWFATA 252 (423)
Q Consensus 201 ~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi~~~ 252 (423)
..+++.| |+++|++++ .++. .-+|..+.+-+..-+.+.
T Consensus 175 ~~A~e~g------I~gVP~fv~--d~~~------~V~Gaq~~~v~~~al~~~ 212 (225)
T COG2761 175 AAAQEMG------IRGVPTFVF--DGKY------AVSGAQPYDVLEDALRQL 212 (225)
T ss_pred HHHHHCC------CccCceEEE--cCcE------eecCCCCHHHHHHHHHHH
Confidence 3567778 999999998 3322 567999999888888776
No 433
>PHA03075 glutaredoxin-like protein; Provisional
Probab=22.71 E-value=98 Score=25.67 Aligned_cols=37 Identities=24% Similarity=0.087 Sum_probs=26.1
Q ss_pred CcEEEEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 154 KPWLIQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 154 ~~~lV~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
+..+|.|=.|.|+-|....... +++++...+-+||.-
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l----~~ledeY~ilrVNIl 38 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEAL----KELEDEYDILRVNIL 38 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHH----HHhhccccEEEEEee
Confidence 3578999999999998776665 444444456666654
No 434
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=22.68 E-value=53 Score=27.67 Aligned_cols=16 Identities=13% Similarity=0.119 Sum_probs=12.4
Q ss_pred EEEEecCCCccccccH
Q 014549 157 LIQVYSDGSYLCGQFS 172 (423)
Q Consensus 157 lV~FYapwC~~C~~~~ 172 (423)
+..|+.|+|+.|++..
T Consensus 2 i~iY~~~~C~~C~ka~ 17 (131)
T PRK01655 2 VTLFTSPSCTSCRKAK 17 (131)
T ss_pred EEEEeCCCChHHHHHH
Confidence 3456789999998855
No 435
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=22.63 E-value=44 Score=27.20 Aligned_cols=31 Identities=3% Similarity=-0.131 Sum_probs=19.4
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
..|..|+|+.|++.....++ ..+.+-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~ 32 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE------HGVDYTAIDIV 32 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH------cCCceEEeccc
Confidence 35778999999886643332 12455566654
No 436
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=22.54 E-value=3.5e+02 Score=22.28 Aligned_cols=80 Identities=18% Similarity=0.162 Sum_probs=45.0
Q ss_pred CccccccHHHHHHHHHHhhccceEEEEEcccchhhhHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCC---C
Q 014549 165 SYLCGQFSGAWKTIAALLEGIANTGMVELGDIRLATHLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGEL---S 241 (423)
Q Consensus 165 C~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~~~~~~~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~---~ 241 (423)
|+||..++-... ..-.+...+.|..|+-...+. .+-.-.|-. -++.|++++=. |...+.....+.|.+ +
T Consensus 24 Cp~c~~iEGlLa-~~P~l~~~ldV~rV~f~RPR~--~vi~llGE~----~QslPvLVL~~-~~~~~~~~~~~~~~rfi~d 95 (112)
T PF11287_consen 24 CPHCAAIEGLLA-SFPDLRERLDVRRVDFPRPRQ--AVIALLGEA----NQSLPVLVLAD-GAPSPDDAGSHGGRRFIDD 95 (112)
T ss_pred CCchHHHHhHHh-hChhhhhcccEEEeCCCCchH--HHHHHhChh----ccCCCEEEeCC-CCCCcccccccCCeEEeCC
Confidence 999977664332 122344556788888764442 233444433 56899987644 333222233444533 5
Q ss_pred HHHHHHHHHHh
Q 014549 242 VDAVTDWFATA 252 (423)
Q Consensus 242 ~~~l~~fi~~~ 252 (423)
.+.|..++.+.
T Consensus 96 ~~~I~~~La~r 106 (112)
T PF11287_consen 96 PRRILRYLAER 106 (112)
T ss_pred HHHHHHHHHHH
Confidence 67777777654
No 437
>PF12725 DUF3810: Protein of unknown function (DUF3810); InterPro: IPR024294 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 333 and 377 amino acids in length and contain a conserved HEXXH sequence motif that is characteristic of metallopeptidases. This family may therefore belong to an as yet uncharacterised family of peptidase enzymes.
Probab=21.90 E-value=3.3e+02 Score=26.76 Aligned_cols=76 Identities=20% Similarity=0.280 Sum_probs=45.6
Q ss_pred HHHHHHHHHHHHHHhhcCC--CCcccccccccccC-CCCHHHHHHHHHHHHH-------hcCCCCCC------ChHHHHH
Q 014549 15 APLILFGLGLFYQLVVLPR--SFPPSHYDALGIKP-YSSVEQVKEAYEKFSS-------KWNSGEEI------PSTADFL 78 (423)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~--~~~~d~y~~lg~~~-~a~~~~ik~ayr~l~~-------~~hPd~~~------~~~~~f~ 78 (423)
+..+..++++.+.+..+-. =...+.++.||++. ..+.+|+++--+.+.. +.++|.+. +..+.+.
T Consensus 58 ~~~~~~~~~~y~~F~~~WGlNY~R~pl~~~l~l~~~~~~~~eL~~l~~~li~~~N~l~~~i~~~~~~~~~~~~~~~~i~~ 137 (318)
T PF12725_consen 58 LNILFFLSVLYFLFYLLWGLNYYRPPLSERLGLETEEYSTEELKELTEYLIEKANELREQITEDDNGVVDIPYDKEEIFE 137 (318)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCCcCHHHHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCccccccCCCCHHHHHH
Confidence 3333444444344333332 22667789999987 7788887666654443 33444331 2466799
Q ss_pred HHHHHHHHcCCh
Q 014549 79 KIQYAYELLTDP 90 (423)
Q Consensus 79 ~i~~Ay~~L~~~ 90 (423)
++.+||+.|++.
T Consensus 138 ~~~~~y~~l~~~ 149 (318)
T PF12725_consen 138 EAREGYENLAER 149 (318)
T ss_pred HHHHHHHHHHHh
Confidence 999999988743
No 438
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=21.39 E-value=1.3e+02 Score=26.65 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=25.7
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccccCCCCHHHHHHHH
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRFEGELSVDAVTDWF 249 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y~G~~~~~~l~~fi 249 (423)
...+.+.| |.|+||+++ +|+. ...|..+.+.+.+-+
T Consensus 165 ~~~a~~~g------v~G~Pt~vv--~g~~------~~~G~~~~~~~~~~i 200 (201)
T cd03024 165 EARARQLG------ISGVPFFVF--NGKY------AVSGAQPPEVFLQAL 200 (201)
T ss_pred HHHHHHCC------CCcCCEEEE--CCeE------eecCCCCHHHHHHHh
Confidence 34667778 999999988 4432 457888888876643
No 439
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=21.23 E-value=49 Score=27.15 Aligned_cols=31 Identities=10% Similarity=0.066 Sum_probs=20.0
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhccceEEEEEcc
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGIANTGMVELG 194 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~~~~~~Vdc~ 194 (423)
..|+.|+|+.|++.....++ ..+.+-.+|..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~------~~i~~~~idi~ 32 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA------NGIEYQFIDIG 32 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH------cCCceEEEecC
Confidence 35788999999887744443 12455566654
No 440
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=21.03 E-value=2e+02 Score=25.28 Aligned_cols=55 Identities=9% Similarity=-0.031 Sum_probs=37.2
Q ss_pred CCCcEEEEEecCCCcc-ccccHHHHHHHHHHhhc---cceEEEEEcccchhhhHHHhhC
Q 014549 152 DSKPWLIQVYSDGSYL-CGQFSGAWKTIAALLEG---IANTGMVELGDIRLATHLAERK 206 (423)
Q Consensus 152 ~~~~~lV~FYapwC~~-C~~~~p~~~~~A~~l~~---~~~~~~Vdc~~~~~~~~l~~~~ 206 (423)
.+++++|.|-=..|+. |........++.+.+.. .+.+..|..+-.+--++..++|
T Consensus 51 ~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y 109 (174)
T PF02630_consen 51 KGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKY 109 (174)
T ss_dssp TTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHH
T ss_pred CCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHH
Confidence 4788899888888865 98888888888877764 3677778777332223444444
No 441
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=20.53 E-value=2.3e+02 Score=20.25 Aligned_cols=54 Identities=26% Similarity=0.273 Sum_probs=28.7
Q ss_pred EEEecCCCccccccHHHHHHHHHHhhcc-ceEEEEEcccch-hhhHHHhhCCCCccccccCccEEEE
Q 014549 158 IQVYSDGSYLCGQFSGAWKTIAALLEGI-ANTGMVELGDIR-LATHLAERKPIGQIFFRRGLPSLVA 222 (423)
Q Consensus 158 V~FYapwC~~C~~~~p~~~~~A~~l~~~-~~~~~Vdc~~~~-~~~~l~~~~~~~~~~~i~~~Pti~~ 222 (423)
..|+.++|+.|++..-..++ .|. ..+..++-.+.. ...++.+..+ ...+|++..
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~-----~gi~~e~~~i~~~~~~~~~~~~~~~~p------~~~vP~l~~ 57 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKA-----LGLELNLKEVNLMKGEHLKPEFLKLNP------QHTVPTLVD 57 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHH-----cCCCCEEEEecCccCCcCCHHHHhhCc------CCCCCEEEE
Confidence 35788999999765433322 232 344444432111 1234555555 448899863
No 442
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.24 E-value=1.4e+02 Score=27.28 Aligned_cols=42 Identities=26% Similarity=0.213 Sum_probs=30.3
Q ss_pred hHHHhhCCCCccccccCccEEEEeCCCCCCCCCcccc-cC--CCCHHHHHHHHHHh
Q 014549 200 THLAERKPIGQIFFRRGLPSLVAFPPGCKSSDCMTRF-EG--ELSVDAVTDWFATA 252 (423)
Q Consensus 200 ~~l~~~~~~~~~~~i~~~Pti~~f~~g~~~~~~~~~y-~G--~~~~~~l~~fi~~~ 252 (423)
..++++++ +.+|||+.+-.+|+-. .. .| -.+.++++.++.+.
T Consensus 164 r~l~~rlg------~~GfPTl~le~ng~~~-----~l~~g~y~~~~~~~~arl~~~ 208 (212)
T COG3531 164 RRLMQRLG------AAGFPTLALERNGTMY-----VLGTGAYFGSPDAWLARLAQR 208 (212)
T ss_pred HHHHHHhc------cCCCCeeeeeeCCceE-----eccCCcccCCcHHHHHHHHHH
Confidence 45888999 8899999999988642 11 24 34567888887665
Done!