Query 014553
Match_columns 422
No_of_seqs 112 out of 250
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 06:16:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014553.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014553hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2722 Predicted membrane pro 100.0 3E-100 6E-105 757.4 19.0 376 1-421 2-392 (408)
2 PF03547 Mem_trans: Membrane t 100.0 2.8E-47 6.1E-52 386.0 23.9 360 9-421 1-377 (385)
3 COG0679 Predicted permeases [G 99.9 9.7E-26 2.1E-30 225.2 19.7 276 7-412 2-277 (311)
4 TIGR00946 2a69 he Auxin Efflux 99.9 5.9E-22 1.3E-26 197.9 21.1 287 7-413 3-291 (321)
5 PRK09903 putative transporter 99.9 3.5E-20 7.6E-25 185.0 23.4 274 11-412 6-280 (314)
6 TIGR00841 bass bile acid trans 93.2 2.2 4.9E-05 42.5 13.9 130 14-161 140-273 (286)
7 TIGR00841 bass bile acid trans 88.5 0.46 1E-05 47.3 3.8 77 331-413 14-91 (286)
8 COG0385 Predicted Na+-dependen 77.1 14 0.00031 37.8 9.1 45 74-118 224-268 (319)
9 TIGR00939 2a57 Equilibrative N 72.4 39 0.00084 35.8 11.3 58 100-164 136-193 (437)
10 TIGR00832 acr3 arsenical-resis 72.0 10 0.00023 38.6 6.7 53 72-127 245-297 (328)
11 PRK03818 putative transporter; 61.1 92 0.002 34.2 11.7 133 32-173 50-187 (552)
12 COG0385 Predicted Na+-dependen 59.5 10 0.00022 38.8 3.8 74 333-412 46-120 (319)
13 TIGR00783 ccs citrate carrier 52.6 37 0.00081 35.2 6.5 85 18-105 208-298 (347)
14 PF05684 DUF819: Protein of un 49.6 1.1E+02 0.0025 31.9 9.7 133 14-165 240-373 (378)
15 PRK11339 abgT putative aminobe 48.5 27 0.00058 38.1 4.9 72 13-86 89-160 (508)
16 PF05684 DUF819: Protein of un 48.2 48 0.001 34.7 6.7 78 17-97 28-109 (378)
17 PF02083 Urotensin_II: Urotens 47.4 4.9 0.00011 21.6 -0.4 6 415-420 7-12 (12)
18 PRK12460 2-keto-3-deoxyglucona 43.0 1.4E+02 0.003 30.7 8.8 102 14-124 166-268 (312)
19 PF03806 ABG_transport: AbgT p 37.5 2.8E+02 0.006 30.4 10.5 106 13-129 79-190 (502)
20 TIGR03802 Asp_Ala_antiprt aspa 37.3 2.3E+02 0.0051 31.2 10.2 152 10-173 8-189 (562)
21 PRK11677 hypothetical protein; 33.7 46 0.00099 30.0 3.3 22 79-100 6-27 (134)
22 PF13593 DUF4137: SBF-like CPA 33.1 27 0.00059 35.4 2.0 81 328-412 34-116 (313)
23 PF06305 DUF1049: Protein of u 32.7 55 0.0012 25.0 3.3 24 73-96 18-41 (68)
24 PF03812 KdgT: 2-keto-3-deoxyg 32.4 1.7E+02 0.0037 30.0 7.5 109 11-127 168-277 (314)
25 PF01758 SBF: Sodium Bile acid 32.3 57 0.0012 30.1 3.9 74 334-412 7-81 (187)
26 KOG3547 Bestrophin (Best vitel 30.9 17 0.00037 39.0 0.1 16 304-319 274-289 (450)
27 PF09964 DUF2198: Uncharacteri 28.5 1.2E+02 0.0026 24.7 4.5 17 81-97 51-67 (74)
28 COG0475 KefB Kef-type K+ trans 28.0 1.7E+02 0.0037 30.6 6.9 64 37-101 264-328 (397)
29 PF13858 DUF4199: Protein of u 27.0 3.3E+02 0.0071 24.1 7.8 95 1-98 61-161 (163)
30 TIGR00832 acr3 arsenical-resis 26.9 73 0.0016 32.5 3.9 75 333-412 51-126 (328)
31 PRK05326 potassium/proton anti 26.9 3.8E+02 0.0082 29.2 9.6 97 22-124 252-350 (562)
32 PF06295 DUF1043: Protein of u 26.2 63 0.0014 28.6 2.9 22 79-100 2-23 (128)
33 PF12534 DUF3733: Leucine-rich 26.0 90 0.002 24.8 3.4 43 61-103 12-59 (65)
34 PF03601 Cons_hypoth698: Conse 25.6 86 0.0019 31.9 4.1 98 60-172 69-173 (305)
35 TIGR03082 Gneg_AbrB_dup membra 24.8 2.1E+02 0.0045 25.8 6.1 46 55-100 55-104 (156)
36 KOG2718 Na+-bile acid cotransp 23.2 1.2E+02 0.0026 31.8 4.7 113 43-165 107-226 (371)
37 PRK01844 hypothetical protein; 22.5 1.4E+02 0.003 24.3 3.8 25 72-96 3-27 (72)
38 COG2323 Predicted membrane pro 22.3 1.3E+02 0.0028 29.4 4.5 80 15-101 9-88 (224)
39 COG3763 Uncharacterized protei 21.1 1.5E+02 0.0033 23.9 3.8 25 71-95 2-26 (71)
40 COG0798 ACR3 Arsenite efflux p 21.0 9.2E+02 0.02 25.2 10.4 74 49-128 224-299 (342)
41 PRK05274 2-keto-3-deoxyglucona 20.9 1.3E+02 0.0028 31.0 4.3 100 15-122 174-274 (326)
42 PF13593 DUF4137: SBF-like CPA 20.8 4.2E+02 0.009 26.9 8.0 72 49-123 197-273 (313)
43 COG2978 AbgT Putative p-aminob 20.5 78 0.0017 34.3 2.7 68 17-86 94-161 (516)
No 1
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=2.6e-100 Score=757.44 Aligned_cols=376 Identities=49% Similarity=0.902 Sum_probs=316.9
Q ss_pred CchHHHHHHHH--HHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH
Q 014553 1 MGFWTFFEVAS--MPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN 78 (422)
Q Consensus 1 m~~~~l~~~A~--~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~ 78 (422)
|||++++.+|. +|++||++|+.+|+++|+++.|+|++|+||.+|++||++|+|||+|+|||+++|+|++.+|||||||
T Consensus 2 mgf~s~~~vas~v~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVn 81 (408)
T KOG2722|consen 2 MGFLSLLEVASGVMPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVN 81 (408)
T ss_pred chHHHHHHHhcccccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHH
Confidence 89999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHH
Q 014553 79 VAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGF 158 (422)
Q Consensus 79 ~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i 158 (422)
+.++|++|.++||+++|++|+|+++||++++||+|||+||||+++++|+|+++++||||+|+|.+||++|++++|++|++
T Consensus 82 v~Lt~~ig~liG~lv~~I~rppp~~~~fiia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~i 161 (408)
T KOG2722|consen 82 VGLTFIIGSLIGWLVVKILRPPPQLRGFIIACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQI 161 (408)
T ss_pred HHHHHHHHHHHHHHHhheecCChhhcCeEEEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhccchhhHH-hhhhcCCCCCCCcccCcccccchhhccccCCCCCcccchhhhccCCCCCCCcccccccccc
Q 014553 159 FIWSYSYQLIKQSSVRYK-ALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQAS 237 (422)
Q Consensus 159 ~~ws~g~~ll~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (422)
++|||+||++.++..+.. ..+++ +.|...+ +. + .++.+..+|+..++..+ ++.+|++.+.
T Consensus 162 l~wty~Y~~~~~p~~~~~~~~~~~-~Ve~~~~--~~-----~-~~s~e~~~~~~~k~~ll----~~~en~~~~~------ 222 (408)
T KOG2722|consen 162 LRWTYVYRMLLPPNLELMSALKES-PVEALLE--SV-----P-QPSVESDEDSTCKTLLL----ASKENRNNQV------ 222 (408)
T ss_pred EEEEEEeeeecCCchhhhhcCChh-hhhhhhh--cc-----C-CCCcccccccccccccc----cccccCCCce------
Confidence 999999997776643222 11111 1111100 00 0 00000000110110000 0111111111
Q ss_pred ccccccchhhhhh-HHHHHHHHHhhcChhHHHHHHHHHHhchhhHHHhhcCCCCChhhHHHHHHHhhhhhhhhhhhhhcc
Q 014553 238 HLQTRKESFWKRS-LEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVG 316 (422)
Q Consensus 238 ~~~~~~~~~~~~~-~~~~~~~l~~~~~Pp~~aailg~ivg~iP~Lr~l~~~~~~pL~~i~ds~~~lG~~f~~~q~~~~~~ 316 (422)
..++++..+|. ....+..++++++||++|+++|+++|.|||||+++|++++|+++++|+++++|
T Consensus 223 --~g~~~~~~~~~~~~~~~~~L~~i~~Pptia~iiA~vigai~pLr~lifg~~apl~~itdsv~llG------------- 287 (408)
T KOG2722|consen 223 --VGREGKVKRRSVSLSEKVILKEIFAPPTIAAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLG------------- 287 (408)
T ss_pred --eeccccceEEEeehhHHhhHHHhcCchHHHHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhc-------------
Confidence 11111111121 12234458999999999999999999999999999999999999999999999
Q ss_pred ccccccCcccCCcccchhhhhcccccccccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCC-CChhHHHHHH
Q 014553 317 WLATSSFSYCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLP-SDPLYHYVLM 395 (422)
Q Consensus 317 ~~~~~~~~~~~~a~IP~~lliLGanL~~gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~-~DPl~~fvl~ 395 (422)
|++|||++++|||||++|++++.++.+++++++++||+++|+.|++++..|+|+|.++ |||+|+||++
T Consensus 288 -----------~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~gl~iv~~A~kl~~ls~~DPlF~~Vll 356 (408)
T KOG2722|consen 288 -----------DGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVGLGIVRLADKLGLLSTDDPLFQFVLL 356 (408)
T ss_pred -----------cccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhhHHHHHHHHHhCcCCCCCchhhhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred hhcCCchhhHHHHHHhhhc----------ceeeEEe
Q 014553 396 VQFTLPPAMNIGKYINNNI----------HWRYLVL 421 (422)
Q Consensus 396 L~~~~PpA~~l~~i~ql~~----------~w~y~v~ 421 (422)
||+++|||||++||||+|+ ||+|.|.
T Consensus 357 Lq~~~PpAi~lg~itqL~g~~e~Ecs~il~W~y~va 392 (408)
T KOG2722|consen 357 LQYASPPAINLGTITQLNGVAERECSVILFWTYAVA 392 (408)
T ss_pred hhhcCCchhhHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 9999999999999999997 9999874
No 2
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=2.8e-47 Score=385.99 Aligned_cols=360 Identities=29% Similarity=0.462 Sum_probs=271.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 014553 9 VASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGI 88 (422)
Q Consensus 9 ~A~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~ 88 (422)
+++.++++|++++++||+++ |+|+++++.+|.+|++++++|+|||+|++++++.+.+++.++|+++++..+.++++++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~--~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLG--RFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLL 78 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHH
Confidence 36789999999999999997 8899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhhhh
Q 014553 89 LGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLI 168 (422)
Q Consensus 89 lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ll 168 (422)
++|++.|++|.|+++++..+.+|+|+|++++|+.++++++.+ +|++|++++.+++.++.|++|+.++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-------------~~~~~~~~~~~~~~i~~~~~~~~l~ 145 (385)
T PF03547_consen 79 LGFLLSRLFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-------------RGVAYAIIFDVVNNIILWSLGYFLL 145 (385)
T ss_pred HHHHHHHhcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-------------hhhhhehHHHHhhHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999642 8899999999999999999999999
Q ss_pred ccchhhHHhhhhcCCCCCCCc--ccCcccccchhhccccCCCCCc--cc-chhhhccCCCCCCCccccc-cccccccccc
Q 014553 169 KQSSVRYKALAQAAEPEEVPK--EVNKDFDANAQTQLLRGTTDDQ--ED-VSVLVASTKSSSDPECQII-VPQASHLQTR 242 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 242 (422)
+..+++.+..+++.+..+..+ ..+.++.+.++++ .+.++++ ++ ..... +.++.++..+... .+........
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 222 (385)
T PF03547_consen 146 ESRSEKEDKSEEEPSSAESIDSEQEDSDEMSLDGSS--PSSTEEEIDEDGSPSST-PSQSSASAPSSVSTSPSPSNSTGA 222 (385)
T ss_pred cccccccccccccccccccccccccCCccccCCccc--ccccccccccCCccccc-ccccccccchhhccCCcccccchh
Confidence 876543322221100000000 0000000000000 0001110 00 00000 0000000000000 0000000011
Q ss_pred cchhhhhhHHH-HHHHHHhhcChhHHHHHHHHHHhchhhHHHhhcCCCCChhhHHHHHHHhhhhhhhhhhhhhccccccc
Q 014553 243 KESFWKRSLEF-LHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATS 321 (422)
Q Consensus 243 ~~~~~~~~~~~-~~~~l~~~~~Pp~~aailg~ivg~iP~Lr~l~~~~~~pL~~i~ds~~~lG~~f~~~q~~~~~~~~~~~ 321 (422)
+.+.+++.++. .+...+.++|||++|+++|++++++|+.++++++ .+++++++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~-----~~i~~~~~~lg------------------ 279 (385)
T PF03547_consen 223 EQKSSNSTRKKLKKSILKLFKNPPLIAIILGLIIGLIPPLRPLFFP-----SFITDSLSYLG------------------ 279 (385)
T ss_pred hhhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcccchH-----hHHHHHHHHHH------------------
Confidence 12222222222 2233789999999999999999999999999988 79999999999
Q ss_pred cCcccCCcccchhhhhcccccccccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCc
Q 014553 322 SFSYCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLP 401 (422)
Q Consensus 322 ~~~~~~~a~IP~~lliLGanL~~gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~P 401 (422)
++++|+.++++|++|+++.+....+.+.....++.|++++|++++++++.+. + |+....+++++.++|
T Consensus 280 ------~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~---l---~~~~~~~~~~~~~~P 347 (385)
T PF03547_consen 280 ------AAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLG---L---DGDMARVLILQAAMP 347 (385)
T ss_pred ------hhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHC---C---CHHHHHHHHHhccCC
Confidence 9999999999999999988777888888888899999999999999998764 2 666888999999999
Q ss_pred hhhHHHHHHhhhc----------ceeeEEe
Q 014553 402 PAMNIGKYINNNI----------HWRYLVL 421 (422)
Q Consensus 402 pA~~l~~i~ql~~----------~w~y~v~ 421 (422)
||++...+|+.++ +|+|++.
T Consensus 348 ~a~~~~~~a~~~~~~~~~~s~~~~~~~~~~ 377 (385)
T PF03547_consen 348 TAINSFVIASLYGLDEEEASSIVFWSTLLS 377 (385)
T ss_pred chHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 9999999999864 8888753
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=99.94 E-value=9.7e-26 Score=225.25 Aligned_cols=276 Identities=23% Similarity=0.339 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 014553 7 FEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (422)
Q Consensus 7 ~~~A~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig 86 (422)
+...+.++++|+++.++||+++ |.|.++++..|.+|++++++.+|||+|++++++-.-++ .++..++...+.+...+
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~--r~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~-~~~~~~~~~~~~~~~~~ 78 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLK--RFGILDEEAARGLSRLVVYVALPALLFNSIATADLSGL-ADLGLIVASLVATLLAF 78 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH--HhcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchh-hhHHHHHHHHHHHHHHH
Confidence 4567889999999999999998 99999999999999999999999999999999987666 88888888888888888
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 014553 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (422)
Q Consensus 87 ~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ 166 (422)
.+...+..|..+.++++++....+.+|+|++++++.+..++ | .++|++|.++++++++++.|++|+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~g~lg~pi~~~~-------~------G~~gl~~~~i~~~~~~~~~~~~g~~ 145 (311)
T COG0679 79 FLLALIGRFLFKLDKRETVIFALASAFPNIGFLGLPVALSL-------F------GEKGLAYAVIFLIIGLFLMFTLGVI 145 (311)
T ss_pred HHHHHHHHHHhccchhhHHHHHHHHHhcccchhhHHHHHHH-------c------CcchHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888999999999999999999999999998877776 4 4478999999999999999999997
Q ss_pred hhccchhhHHhhhhcCCCCCCCcccCcccccchhhccccCCCCCcccchhhhccCCCCCCCccccccccccccccccchh
Q 014553 167 LIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESF 246 (422)
Q Consensus 167 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (422)
.+...+.+. +++.
T Consensus 146 ~l~~~~~~~-------------------------------------------------------------------~~~~ 158 (311)
T COG0679 146 LLARSGGGT-------------------------------------------------------------------NKSL 158 (311)
T ss_pred HHHHhcCCc-------------------------------------------------------------------hhHH
Confidence 666431100 0011
Q ss_pred hhhhHHHHHHHHHhhcChhHHHHHHHHHHhchhhHHHhhcCCCCChhhHHHHHHHhhhhhhhhhhhhhccccccccCccc
Q 014553 247 WKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYC 326 (422)
Q Consensus 247 ~~~~~~~~~~~l~~~~~Pp~~aailg~ivg~iP~Lr~l~~~~~~pL~~i~ds~~~lG~~f~~~q~~~~~~~~~~~~~~~~ 326 (422)
++ ...+-+.||+.+|.++|++..... +.-+ .++.++++++|
T Consensus 159 ~~-------~~~~~~~nP~i~a~i~g~~~~~~~------i~lP---~~~~~~~~~l~----------------------- 199 (311)
T COG0679 159 LS-------VLKKLLTNPLIIALILGLLLNLLG------ISLP---APLDTAVDLLA----------------------- 199 (311)
T ss_pred HH-------HHHHHHhCcHHHHHHHHHHHHHcC------CCCc---HHHHHHHHHHH-----------------------
Confidence 11 113445699999999999987655 2221 28899999999
Q ss_pred CCcccchhhhhcccccccccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHH
Q 014553 327 RDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (422)
Q Consensus 327 ~~a~IP~~lliLGanL~~gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l 406 (422)
++++|++++.+|..|++ .+.++.+++.+......|+++.|++...+.+.. | ++ +...-++.++.++|+|.|-
T Consensus 200 -~a~~pl~li~lG~~L~~-~~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~---~-l~--~~~~~v~vl~~a~P~A~~~ 271 (311)
T COG0679 200 -SAASPLALIALGLSLAF-LKLKGSKPPIILIALSLKLLLAPLVALLVAKLL---G-LS--GLALQVLVLLSAMPTAVNA 271 (311)
T ss_pred -HhhhhHHHHHHhhhcch-hhhccccchhHHHHHHHHHHHHHHHHHHHHHHc---C-CC--hHHHHHHHHHhhCcHHhHH
Confidence 99999999999999998 666777778888888889999999999865544 3 34 4444888999999999999
Q ss_pred HHHHhh
Q 014553 407 GKYINN 412 (422)
Q Consensus 407 ~~i~ql 412 (422)
..+|+-
T Consensus 272 ~v~a~~ 277 (311)
T COG0679 272 YVLARQ 277 (311)
T ss_pred HHHHHH
Confidence 999986
No 4
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=99.89 E-value=5.9e-22 Score=197.88 Aligned_cols=287 Identities=19% Similarity=0.189 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHH
Q 014553 7 FEVASMPIVQVLLISVLGALM-ATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLI 85 (422)
Q Consensus 7 ~~~A~~pi~kVlli~~~G~~l-A~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~i 85 (422)
++.....++.++++.++|+++ . |+|+++++..+.+|++++++.+|||+|+++++.-.-++....+...+.....+.+
T Consensus 3 ~~~~~~~ilpv~~ii~lG~~~~~--r~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (321)
T TIGR00946 3 TYVILETVLPILVVILLGYILGK--RFGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSG 80 (321)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566778899999999999999 5 8999999999999999999999999999999853333445555555566667778
Q ss_pred HHHHHHHHHH-hcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 014553 86 GGILGWIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (422)
Q Consensus 86 g~~lg~l~~k-i~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g 164 (422)
.++++|++.| .+|.+++.++....++.++|++.+-+-+++++ ||++.. .+..|...+.....+..|+++
T Consensus 81 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~N~~~~GlPl~~~~-------~G~~~~---~~~~~~~~~~~~~~~~~~~~~ 150 (321)
T TIGR00946 81 SYALIWLITKPLFKADYGKLSGFLLVSALPNTAFIGYPLLLSL-------FGEEGA---KILIAALFIDTGAVLMTIALG 150 (321)
T ss_pred HHHHHHHHHHHHHhcccchhhHHHHHhhhccceeehHHHHHHH-------hcccch---hhhHHHHHHHhccchhHHHHH
Confidence 8999999999 88999999999999999999999999999999 554311 136677767766678899998
Q ss_pred hhhhccchhhHHhhhhcCCCCCCCcccCcccccchhhccccCCCCCcccchhhhccCCCCCCCccccccccccccccccc
Q 014553 165 YQLIKQSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKE 244 (422)
Q Consensus 165 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (422)
+-+...... ++ + ++.+
T Consensus 151 ~~~~~~~~~-----~~-------------------~----------------------------------------~~~~ 166 (321)
T TIGR00946 151 LFLVSEDGA-----GG-------------------E----------------------------------------GSGE 166 (321)
T ss_pred HHHhccccc-----cc-------------------c----------------------------------------ccch
Confidence 754321100 00 0 0001
Q ss_pred hhhhhhHHHHHHHHHhhcChhHHHHHHHHHHhchhhHHHhhcCCCCChhhHHHHHHHhhhhhhhhhhhhhccccccccCc
Q 014553 245 SFWKRSLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFS 324 (422)
Q Consensus 245 ~~~~~~~~~~~~~l~~~~~Pp~~aailg~ivg~iP~Lr~l~~~~~~pL~~i~ds~~~lG~~f~~~q~~~~~~~~~~~~~~ 324 (422)
+.+++.++. ..+-+.||+.+|.++|+++..... + -| .++.++++++|
T Consensus 167 ~~~~~~~~~---~~~~~~nP~iia~i~Gl~~~~~~i-~-------lP-~~l~~~l~~lg--------------------- 213 (321)
T TIGR00946 167 STRLMLIFV---WKKLIKFPPLWAPLLSVILSLVGF-K-------MP-GLILKSISILS--------------------- 213 (321)
T ss_pred hHHHHHHHH---HHHHHhCCChHHHHHHHHHHHHhh-c-------Cc-HHHHHHHHHHH---------------------
Confidence 111112111 123446999999999999998763 1 11 58899999999
Q ss_pred ccCCcccchhhhhcccccccccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhh
Q 014553 325 YCRDGTIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAM 404 (422)
Q Consensus 325 ~~~~a~IP~~lliLGanL~~gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~ 404 (422)
++++|+.++++|..+.. ++.+.+++.+...++.|+++.|++...+.... +-|+...-++.++.++|||.
T Consensus 214 ---~~~~plaLl~lG~~l~~--~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~------~l~~~~~~~~vl~aa~P~a~ 282 (321)
T TIGR00946 214 ---GATTPMALFSLGLALSP--RKIKLGVRDAILALIVRFLVQPAVMAGISKLI------GLRGLELSVAILQAALPGGA 282 (321)
T ss_pred ---HHHHHHHHHHHHHhhCh--hhhccChHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHHcCChhh
Confidence 99999999999998864 23334456778888999999999997766532 33788899999999999999
Q ss_pred HHHHHHhhh
Q 014553 405 NIGKYINNN 413 (422)
Q Consensus 405 ~l~~i~ql~ 413 (422)
+...+|+-.
T Consensus 283 ~~~i~A~~y 291 (321)
T TIGR00946 283 VAAVLATEY 291 (321)
T ss_pred HHHHHHHHh
Confidence 999998863
No 5
>PRK09903 putative transporter YfdV; Provisional
Probab=99.86 E-value=3.5e-20 Score=185.04 Aligned_cols=274 Identities=16% Similarity=0.202 Sum_probs=205.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014553 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILG 90 (422)
Q Consensus 11 ~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg 90 (422)
...++-++++.++|+++. |+|+++++..|.+|++++++.+||++|+++.+. +.+++.+-|.+.+..++.++..++++
T Consensus 6 ~~~ilpif~ii~lG~~~~--r~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (314)
T PRK09903 6 IGDLLPIIVIMLLGYFSG--RRETFSEDQARAFNKLVLNYALPAALFVSITRA-NREMIFADTRLTLVSLVVIVGCFFFS 82 (314)
T ss_pred HHHHHHHHHHHHHHHHHH--HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhC-CHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 345667779999999997 999999999999999999999999999999975 66777644556788888888888899
Q ss_pred HHHHH-hcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhc
Q 014553 91 WIVVK-LLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIK 169 (422)
Q Consensus 91 ~l~~k-i~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ll~ 169 (422)
|++.| .+|.+++.++.....++++|++.+-+-+++++ ||++.. -|+.|..++ .+.+++.|++|.-+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~N~gf~G~Pl~~~~-------~G~~~~---~~~~~a~~~-~~~~~~~~~~g~~~~~ 151 (314)
T PRK09903 83 WFGCYKFFKRTHAEAAVCALIAGSPTIGFLGFAVLDPI-------YGDSVS---TGLVVAIIS-IIVNAITIPIGLYLLN 151 (314)
T ss_pred HHHHHHHhcCCcchhhHhhhhhcCCCcccccHHHHHHH-------cCchhh---hhhHHHHHH-HHHHHHHHHHHHHHHc
Confidence 98875 66777777888888889999999999999999 664421 155565554 3578999999977665
Q ss_pred cchhhHHhhhhcCCCCCCCcccCcccccchhhccccCCCCCcccchhhhccCCCCCCCccccccccccccccccchhhhh
Q 014553 170 QSSVRYKALAQAAEPEEVPKEVNKDFDANAQTQLLRGTTDDQEDVSVLVASTKSSSDPECQIIVPQASHLQTRKESFWKR 249 (422)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (422)
..+.+ ++ +++..++.
T Consensus 152 ~~~~~----~~-------------------------------------------------------------~~~~~~~~ 166 (314)
T PRK09903 152 PSSGA----DG-------------------------------------------------------------KKNSNLSA 166 (314)
T ss_pred ccccc----cc-------------------------------------------------------------ccchHHHH
Confidence 32100 00 00001111
Q ss_pred hHHHHHHHHHhhcChhHHHHHHHHHHhchhhHHHhhcCCCCChhhHHHHHHHhhhhhhhhhhhhhccccccccCcccCCc
Q 014553 250 SLEFLHQLLEELLAPPTLAAIVGFIFGAVVWLRNLIIGDSAPLRVIQDSIEILGYVFVSAQFYCFVGWLATSSFSYCRDG 329 (422)
Q Consensus 250 ~~~~~~~~l~~~~~Pp~~aailg~ivg~iP~Lr~l~~~~~~pL~~i~ds~~~lG~~f~~~q~~~~~~~~~~~~~~~~~~a 329 (422)
+ .+-+.||+.+|.++|+++-+. +-.-| .++.++++++| ++
T Consensus 167 l-------~~~~~nP~iia~~~gl~~~l~--------~i~lP-~~i~~~l~~lg------------------------~~ 206 (314)
T PRK09903 167 L-------ISAAKEPVVWAPVLATILVLV--------GVKIP-AAWDPTFNLIA------------------------KA 206 (314)
T ss_pred H-------HHHHhchHHHHHHHHHHHHHc--------CCCCC-HHHHHHHHHHH------------------------HH
Confidence 1 233568999999999997542 21112 58999999999 99
Q ss_pred ccchhhhhcccccccccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHHHHH
Q 014553 330 TIPCITLILGGNLIQGLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKY 409 (422)
Q Consensus 330 ~IP~~lliLGanL~~gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l~~i 409 (422)
++|+.++.+|+.|++... +.. +......+.|+++.|++...+... .|+ |+...=+++++.++|+|.+...+
T Consensus 207 ~~PlaL~~iG~~L~~~~~--~~~-~~~~~~~~~Kli~~P~i~~~~~~~---~~l---~~~~~~v~vl~aa~P~a~~~~i~ 277 (314)
T PRK09903 207 NSGVAVFAAGLTLAAHKF--EFS-AEIAYNTFLKLILMPLALLLVGMA---CHL---NSEHLQMMVLAGALPPAFSGIII 277 (314)
T ss_pred HHHHHHHHHHHHHhhccc--ccc-HHHHHHHHHHHHHHHHHHHHHHHH---cCC---CcHHHHHHHHHHcccHHHHHHHH
Confidence 999999999999987422 122 334566778999999988655443 243 67777899999999999999988
Q ss_pred Hhh
Q 014553 410 INN 412 (422)
Q Consensus 410 ~ql 412 (422)
|+-
T Consensus 278 A~~ 280 (314)
T PRK09903 278 ASR 280 (314)
T ss_pred HHH
Confidence 875
No 6
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=93.23 E-value=2.2 Score=42.45 Aligned_cols=130 Identities=15% Similarity=0.103 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHhhccc---hhhhhhhhHHHHHhhhcccchhhH-HHHHHHHHHHHHHHHHHHHH
Q 014553 14 IVQVLLISVLGALMATQYWNLLTADARRSLNK---MVFTVFTPSLMFASLAKTVTLEEI-ISWWFMPVNVAMTFLIGGIL 89 (422)
Q Consensus 14 i~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~---lv~~vF~PaLiFskla~~lt~~~i-~~~w~ipv~~~l~~~ig~~l 89 (422)
..-|++=...|..+. ++ . ++.+|.+.+ +... ++=.+++.-++.+. +++ .+.|.+-+..++..++|+.+
T Consensus 140 ~~~v~vPl~lG~~~r--~~--~-p~~~~~~~~~~~~s~~-~l~liv~~~~~~~~--~~i~~~~~~~~~~~~ll~~~~~~~ 211 (286)
T TIGR00841 140 LVAVLIPVSIGMLVK--HK--L-PQIAKIILKVGLISVF-LLSVIIAVVGGINV--ENLATIGPLLLLVGILLPLAGFLL 211 (286)
T ss_pred HHHHHHHHHHHHHHH--HH--h-HHHHHHHHhCchHHHH-HHHHHHHHHHHhhH--HHHHHhhHHHHHHHHHHHHHHHHH
Confidence 455566677888774 22 1 333333333 2222 22234444444333 222 23455556678889999999
Q ss_pred HHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHH
Q 014553 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIW 161 (422)
Q Consensus 90 g~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~w 161 (422)
||.+.|.+|.+++.+.-+.-.++..|++ +-+.+..+. |+ ++ ...-...|..++...+.++.+
T Consensus 212 g~~~a~~~~l~~~~~~t~~~~~g~qN~~-lal~la~~~-------f~-~~-~a~~~~~~~v~~~~~~~~~a~ 273 (286)
T TIGR00841 212 GYLLAKLAGLPWARCRTISIEVGMQNSQ-LCSTIAQLS-------FS-PE-VAVPSAIFPLIYALFQLAFAL 273 (286)
T ss_pred HHHHHHHhCCCHhhheeeeeeeecccHH-HHHHHHHHh-------cC-hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888888899999988 554444433 43 22 233344566655555555543
No 7
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=88.52 E-value=0.46 Score=47.34 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=60.6
Q ss_pred cchhhhhcccccccc-cCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHHHHH
Q 014553 331 IPCITLILGGNLIQG-LRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKY 409 (422)
Q Consensus 331 IP~~lliLGanL~~g-l~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l~~i 409 (422)
+..+++.+|.++... +++...+++.+...++.|++++|+++..+.+.. +.||.+...+++..++|+|.+...+
T Consensus 14 l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~------~l~~~~~~glvL~~~~P~~~~s~v~ 87 (286)
T TIGR00841 14 LFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVF------KLPPELAVGVLIVGCCPGGTASNVF 87 (286)
T ss_pred HHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHh------CCCHHHHHHHHheeeCCCchHHHHH
Confidence 566788999998742 333334557777888899999999997776533 4689999999999999999998888
Q ss_pred Hhhh
Q 014553 410 INNN 413 (422)
Q Consensus 410 ~ql~ 413 (422)
|+..
T Consensus 88 t~~~ 91 (286)
T TIGR00841 88 TYLL 91 (286)
T ss_pred HHHh
Confidence 8763
No 8
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=77.12 E-value=14 Score=37.79 Aligned_cols=45 Identities=27% Similarity=0.282 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcch
Q 014553 74 FMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGN 118 (422)
Q Consensus 74 ~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~s 118 (422)
.+-+..+++..+|+.+||...|.++.++++|.-+.-|++-.|++.
T Consensus 224 ~v~~~v~~~n~lg~~~gy~~ar~~g~~~a~~iti~ie~g~qn~~l 268 (319)
T COG0385 224 LIFVAVILHNLLGLLLGYFGARLLGFDKADEITIAIEGGMQNLGL 268 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCChhheeeEEEeeccccHHH
Confidence 577778999999999999999999999999999999999999863
No 9
>TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT).
Probab=72.37 E-value=39 Score=35.85 Aligned_cols=58 Identities=19% Similarity=0.157 Sum_probs=34.2
Q ss_pred CCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhh
Q 014553 100 KPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYS 164 (422)
Q Consensus 100 p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g 164 (422)
|+..+.+..+.+..|=.+++--.+.-+.- ++.. .....+..|+++...+-.+.+-.|.
T Consensus 136 ~~~~~a~~~G~g~aGv~~s~~~ii~~a~~--~~~~-----~~~~~a~~YF~~a~~v~l~~i~~~~ 193 (437)
T TIGR00939 136 STYSSAVMSGQGLAGVLTSLAMILVKASG--NDSH-----GLKKSALGYFGTPCVVQLICIVCYL 193 (437)
T ss_pred HHHHHHHHhcchhHHHHHHHHHHHHHHhc--CCcc-----chhhhhhhHHHHHHHHHHHHHHHHH
Confidence 44555666666666666665544444331 1111 2466788999888887666666665
No 10
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=72.01 E-value=10 Score=38.62 Aligned_cols=53 Identities=25% Similarity=0.190 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHH
Q 014553 72 WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (422)
Q Consensus 72 ~w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl 127 (422)
.+.+-...++++.+++.+||.++|.+|.+++++.-+.-+++-.|+ .+++.-|.
T Consensus 245 i~~~~~~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~---~lai~lA~ 297 (328)
T TIGR00832 245 IALIAIPLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNF---ELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhH---HHHHHHHH
Confidence 344444677899999999999999999999999988888888775 34444444
No 11
>PRK03818 putative transporter; Validated
Probab=61.14 E-value=92 Score=34.22 Aligned_cols=133 Identities=14% Similarity=0.153 Sum_probs=72.6
Q ss_pred cCC-CChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeE
Q 014553 32 WNL-LTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIIS-WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIA 109 (422)
Q Consensus 32 ~~i-L~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~-~w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva 109 (422)
.|+ +++.+...+.++-+.+|.=|. -.+-+.+. ++.+++ =|-+.+..++.++++.+++|+..|+++.++. ..+
T Consensus 50 ~~~~~~~~~~~~~~~~gl~lFv~~v-Gl~~Gp~f-~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~ 123 (552)
T PRK03818 50 FGLTLDSDMLHFIQEFGLILFVYTI-GIQVGPGF-FSSLRKSGLRLNLFAVLIVILGGLVTAILHKLFGIPLP----VML 123 (552)
T ss_pred cCcccChHHHHHHHHHHHHHHHHHH-hhcccHHH-HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH----HHH
Confidence 444 555566666677777776443 11111111 234444 3556667888889999999999999999843 333
Q ss_pred EeecCCcchhHH-HHH-HHHhhcCCCC-CCCchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccchh
Q 014553 110 TCASGNLGNLLL-IIV-PAICHEQGSP-FGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSSV 173 (422)
Q Consensus 110 ~~~fgN~~sLPL-~lv-~sl~~~~~~p-fg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ll~~~~~ 173 (422)
....|=.+|=|- +-. +++ ++.+.. -.+++....++++|. + -.+|.++.-.+..++++.+.+
T Consensus 124 G~~aGa~T~tp~l~aa~~~~-~~~~~~~~~~~~~a~gYa~~Yp-~-g~i~~il~~~~~~~~~~~~~~ 187 (552)
T PRK03818 124 GIFSGAVTNTPALGAGQQIL-RDLGTPGDLVDQMGMGYAMAYP-F-GICGILLSMWLIRLIFRINVD 187 (552)
T ss_pred HHhhccccccHHHHHHHHHH-hccCCCccccCCcchhhHhHhH-H-HHHHHHHHHHHHHHHhCCChH
Confidence 333343444332 222 222 211110 112334577888884 2 335555543477788887644
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=59.51 E-value=10 Score=38.81 Aligned_cols=74 Identities=12% Similarity=0.201 Sum_probs=59.9
Q ss_pred hhhhhccccccc-ccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHHHHHHh
Q 014553 333 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYIN 411 (422)
Q Consensus 333 ~~lliLGanL~~-gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l~~i~q 411 (422)
.+++..|..|.+ -.+..--+||..+..++.-++++|++++++.+... -||-..-=+++..+.|...+.-.||+
T Consensus 46 lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~------l~~~l~~Gl~ll~~~Pggv~S~~~t~ 119 (319)
T COG0385 46 LIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFP------LPPELAVGLLLLGCCPGGVASNAMTY 119 (319)
T ss_pred HHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcC------CCHHHHHhHHheeeCCCchhHHHHHH
Confidence 556678888875 23455567788999999999999999999987653 48888888899999999988877777
Q ss_pred h
Q 014553 412 N 412 (422)
Q Consensus 412 l 412 (422)
+
T Consensus 120 l 120 (319)
T COG0385 120 L 120 (319)
T ss_pred H
Confidence 6
No 13
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=52.63 E-value=37 Score=35.23 Aligned_cols=85 Identities=12% Similarity=0.217 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhhccCCCChHHHhhccc---hhhhhhhhHHHHHhhh-cccchhhHHHHHHHHHH-HHHHHHHH-HHHHH
Q 014553 18 LLISVLGALMATQYWNLLTADARRSLNK---MVFTVFTPSLMFASLA-KTVTLEEIISWWFMPVN-VAMTFLIG-GILGW 91 (422)
Q Consensus 18 lli~~~G~~lA~~~~~iL~~~~~r~ls~---lv~~vF~PaLiFskla-~~lt~~~i~~~w~ipv~-~~l~~~ig-~~lg~ 91 (422)
......|+++. ..|+++++....-++ .+...+++.+++. ++ ...+++++.+.-=.|.. ..+...+| .+.++
T Consensus 208 v~mII~~vi~k--~~gllp~~i~~~a~~~~~F~~~~lt~~ll~g-iGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~ 284 (347)
T TIGR00783 208 AFMILIAAALK--AFGLVPKEIEEGAKMLSQFISKNLTWPLMVG-VGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGA 284 (347)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHH-cccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHH
Confidence 45566777775 899999987765544 4455577777663 23 44788888886412222 33333444 34456
Q ss_pred HHHHhcCCCCCCCC
Q 014553 92 IVVKLLRPKPHLEG 105 (422)
Q Consensus 92 l~~ki~r~p~~~~~ 105 (422)
++.|+++.=|-+..
T Consensus 285 lvGKllG~YPiE~a 298 (347)
T TIGR00783 285 FLGKLMGMYPVESA 298 (347)
T ss_pred HHHHHhCCChHHHH
Confidence 88899887654443
No 14
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=49.56 E-value=1.1e+02 Score=31.93 Aligned_cols=133 Identities=14% Similarity=0.149 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhhccCCCCh-HHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 014553 14 IVQVLLISVLGALMATQYWNLLTA-DARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWI 92 (422)
Q Consensus 14 i~kVlli~~~G~~lA~~~~~iL~~-~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l 92 (422)
..-++.++..|...+. ...... .....+.....++ .|.-+|..-+++++.+-..+.+..++...+-.++=++
T Consensus 240 ~~~il~~tt~~l~~~~--~~~~~~l~g~~~lg~~lly~-----ffa~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~ 312 (378)
T PF05684_consen 240 TWLILTVTTLGLATSF--PPFRKLLRGASELGTFLLYL-----FFAVIGASADISELLDAPSLFLFGFIILAIHLLLMLI 312 (378)
T ss_pred HHHHHHHHHHHHHHhc--cchhhcCCchHHHHHHHHHH-----HHHHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3455666677766652 222222 3444455444444 5788999999999999555677777778888888889
Q ss_pred HHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 014553 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (422)
Q Consensus 93 ~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~ 165 (422)
+.|++|.| -..+..++-.|++-=+-+-..|-.+.+ +=..-|+.--.+.-++|+.+-+..++
T Consensus 313 ~~kl~k~~----l~~~~vAS~AnIGGpaTA~a~A~a~~~--------~Lv~pgvL~gvlGyaiGty~G~~va~ 373 (378)
T PF05684_consen 313 LGKLFKID----LFELLVASNANIGGPATAPAVAAAKGP--------SLVPPGVLMGVLGYAIGTYLGLAVAQ 373 (378)
T ss_pred HHHHHCCC----HHHHHHHhhcccCCcchHHHHHHhcCC--------ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998 455555666677666665444443321 12445666667777778777776664
No 15
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional
Probab=48.50 E-value=27 Score=38.08 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 014553 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (422)
Q Consensus 13 pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig 86 (422)
|-+.+.+++..|+-.| +|.|.++.-.||.+.+.--...+|..+|.-+-.++- +|.--+-++|+...+....|
T Consensus 89 ~pLG~vlv~mlgvgva-e~sG~i~a~i~~~v~~~p~~~it~ivvf~gv~s~~a-sdaGyVvl~PL~a~if~a~G 160 (508)
T PRK11339 89 APLGAILALVLGAGLA-ERVGLLPALMVKMASHVNARYASYMVLFIAFFSHIS-SDAALVIMPPMGALIFLAVG 160 (508)
T ss_pred CcHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHHcC
Confidence 5678888888888888 699999999999999999998888887766655554 23333778888888876544
No 16
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=48.21 E-value=48 Score=34.65 Aligned_cols=78 Identities=19% Similarity=0.271 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHH----HHHHHHHHHHHHHHHHHH
Q 014553 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF----MPVNVAMTFLIGGILGWI 92 (422)
Q Consensus 17 Vlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~----ipv~~~l~~~ig~~lg~l 92 (422)
+++....|.+++ ..|++|......+.+.+.+.++|.-++-=| -+.+++++.+... +.+...+.+++|..+++.
T Consensus 28 ~vl~~~~~~~ls--nlgli~~p~~s~~y~~v~~~~vPlai~LlL-l~~Dlr~i~~~g~~~l~~F~~~~~g~viG~~va~~ 104 (378)
T PF05684_consen 28 AVLCYLLGMLLS--NLGLIDSPASSPVYDFVWTYLVPLAIPLLL-LSADLRRILRLGGRLLLAFLIGAVGTVIGAVVAFL 104 (378)
T ss_pred HHHHHHHHHHHH--HCCCcCCCCcchHHHHHHHHHHHHHHHHHH-HHccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777888887 899996666677888999999998776544 3456666665553 334445555666666665
Q ss_pred HHHhc
Q 014553 93 VVKLL 97 (422)
Q Consensus 93 ~~ki~ 97 (422)
+.+-.
T Consensus 105 l~~~~ 109 (378)
T PF05684_consen 105 LFGGF 109 (378)
T ss_pred HHhhc
Confidence 55444
No 17
>PF02083 Urotensin_II: Urotensin II; InterPro: IPR001483 Urotensin II, a small peptide that contains a disulphide bridge, was originally isolated from the caudal portion of the spinal cord of teleost and elasmobranch fish []. The peptide has also been found in the brain of frogs []. Urotensin II seems to be involved in smooth muscle stimulation.; GO: 0005179 hormone activity, 0005576 extracellular region
Probab=47.38 E-value=4.9 Score=21.59 Aligned_cols=6 Identities=50% Similarity=1.470 Sum_probs=4.9
Q ss_pred ceeeEE
Q 014553 415 HWRYLV 420 (422)
Q Consensus 415 ~w~y~v 420 (422)
||.|+|
T Consensus 7 FWKYCv 12 (12)
T PF02083_consen 7 FWKYCV 12 (12)
T ss_pred hhhhcC
Confidence 888885
No 18
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=42.98 E-value=1.4e+02 Score=30.70 Aligned_cols=102 Identities=23% Similarity=0.279 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHH
Q 014553 14 IVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWI 92 (422)
Q Consensus 14 i~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~-~~l~~~ig~~lg~l 92 (422)
++-.++=..+|.++. | ++++.|+.+++=.-. ..|-.+ --++.+++++++.+.++--+- .+++..+...+++.
T Consensus 166 lv~lilpILiGmilG----N-ld~~~~~~l~~Gi~f-~I~f~~-f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~ 238 (312)
T PRK12460 166 LVAALLPLVLGMILG----N-LDPDMRKFLTKGGPL-LIPFFA-FALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIF 238 (312)
T ss_pred HHHHHHHHHHHHHHh----c-cchhhHHHHhccceE-eHHHHH-HHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 355667778898884 3 777888887776432 444333 358999999999999654444 55577778888899
Q ss_pred HHHhcCCCCCCCCeeeEEeecCCcchhHHHHH
Q 014553 93 VVKLLRPKPHLEGLVIATCASGNLGNLLLIIV 124 (422)
Q Consensus 93 ~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv 124 (422)
+.|.+|.+++. + ...+...||.--=|-++.
T Consensus 239 i~rllg~~~~~-g-~li~stAGnAIcgpAAVa 268 (312)
T PRK12460 239 ADRLVGGTGIA-G-AAASSTAGNAVATPLAIA 268 (312)
T ss_pred HHHHhCCChhH-H-HHHHHHhhHHHHHHHHHH
Confidence 99999877554 2 222223677655555543
No 19
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae. AbgT expression is apparently cryptic in wild type cells, but when present on a high copy number plasmid, or when expressed at higher levels due to mutation, it allows utilization of p-aminobenzoyl-glutamate as a source of p-aminobenzoate for p-aminobenzoate auxotrophs []. p-Aminobenzoate is a constituent of, and a precursor for, the biosynthesis of folic acid. It is not currently known if AbgT is naturally involved in transporting p-aminobenzoyl-glutamate, or if it only becomes involved when under altered regulation. MtrF is an inner membrane protein which, together with the MtrCDE efflux pump, is required for high-level resistance to hydrophobic antimicrobial agents in N. gonorrhoeae []. Its role in this process is not known, but it has been suggested that it may be a component of the efflux pump which is dispensible for basal activity, but required for high-level activity [].
Probab=37.47 E-value=2.8e+02 Score=30.42 Aligned_cols=106 Identities=21% Similarity=0.226 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHH------HH
Q 014553 13 PIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFL------IG 86 (422)
Q Consensus 13 pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~------ig 86 (422)
|-+.+.+++..|+=.| +|.|+++.-.||.+.+.--.+.+|+++|.-+-.++--| .--.-.+|+..++... .|
T Consensus 79 ~PLG~Vlv~mlgvgvA-E~sGll~a~~r~~~~~~p~~~vt~~v~f~Gi~sniasD-Ag~Vvl~PL~a~iF~~~GRhPlaG 156 (502)
T PF03806_consen 79 PPLGLVLVMMLGVGVA-EKSGLLSALMRKLVLKAPPRLVTPAVVFVGIMSNIASD-AGYVVLPPLAAMIFAAVGRHPLAG 156 (502)
T ss_pred CcHHHHHHHHHHHHHH-HHhchHHHHHHHHhccCCcchhhHHHHHHHHHhccccc-ceeEeHHhhHHHHHHHcCCChHHH
Confidence 5677888888888888 69999999999999999999999999999998888544 4445568888777664 45
Q ss_pred HHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhh
Q 014553 87 GILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICH 129 (422)
Q Consensus 87 ~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~ 129 (422)
...|+.-+- +...|.-.-+-+-.+--.+.++-++
T Consensus 157 i~~afa~vs---------~GfsAnl~i~~~D~ll~giT~~Aa~ 190 (502)
T PF03806_consen 157 IAAAFAGVS---------GGFSANLLIGSTDALLAGITTSAAQ 190 (502)
T ss_pred HHHHHHHHh---------ccccceeeccchhHHHHHhHHHHHH
Confidence 666665441 3333333333344444445555444
No 20
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=37.32 E-value=2.3e+02 Score=31.17 Aligned_cols=152 Identities=14% Similarity=0.046 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccch-hhhhhhhHHHHHhhhcc--------------------cc---
Q 014553 10 ASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKM-VFTVFTPSLMFASLAKT--------------------VT--- 65 (422)
Q Consensus 10 A~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~l-v~~vF~PaLiFskla~~--------------------lt--- 65 (422)
...|++=+++++++|+++. |.++ |.+|== +--++.=+|++..++.+ .-
T Consensus 8 ~~~p~l~lfl~i~lG~~lG--~iki------~~~~LG~~~gvLfvgl~~G~~g~~i~~~v~~~gl~lFvy~vG~~~Gp~F 79 (562)
T TIGR03802 8 RSNPEIALFLSLALGYLIG--KIKF------GSFQLGGVAGSLIVAVLIGQLGIQIDPGVKAVFFALFIFAIGYEVGPQF 79 (562)
T ss_pred HHCHHHHHHHHHHHhHhhc--ceEE------eeeecchHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHhhhccCHHH
Confidence 4689999999999999886 4433 111111 11122223333333332 21
Q ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCC----CCchh
Q 014553 66 LEEIIS-WWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPF----GNRDV 140 (422)
Q Consensus 66 ~~~i~~-~w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pf----g~~d~ 140 (422)
++++++ =|-.-+..++..++|.++.|...|++..|+..-..+. +++--|+-.|=-+ .+++.+-+.++= ...+.
T Consensus 80 f~~l~~~g~~~~~~a~~~~~~~~~~~~~~~~~~g~~~~~~~Gl~-aGalT~tp~l~aA-~~a~~~~~~~~~~~~~~~~~~ 157 (562)
T TIGR03802 80 FASLKKDGLREIILALVFAVSGLITVYALAKIFGLDKGTAAGLA-AGGLTQSAVIGTA-GDAIEKLGLSPEQKTAYQGNV 157 (562)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH-hchhhccHHHHHH-HHHHHhcCCCcchhhcccccc
Confidence 234444 2555566777888899999999999999955444433 3344455554333 455533111100 01234
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHh-hhhhhccchh
Q 014553 141 CSSVGLSYASFSMALGGFFIWSY-SYQLIKQSSV 173 (422)
Q Consensus 141 ~~~rG~aY~~~~~~~g~i~~ws~-g~~ll~~~~~ 173 (422)
...++++|. +-.+|.++.-.+ ..+++|.+.+
T Consensus 158 avgYav~Yp--fGvig~i~~~~~~~p~l~~~~~~ 189 (562)
T TIGR03802 158 AVAYAVTYI--FGTIGVIIVLVNILPWLMGIDLR 189 (562)
T ss_pred ceeeehhhh--hHHHHHHHHHHHHHHHHhCCChH
Confidence 577888884 455777765444 5677877543
No 21
>PRK11677 hypothetical protein; Provisional
Probab=33.71 E-value=46 Score=29.99 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 014553 79 VAMTFLIGGILGWIVVKLLRPK 100 (422)
Q Consensus 79 ~~l~~~ig~~lg~l~~ki~r~p 100 (422)
+++.+++|.++|+++.|++...
T Consensus 6 a~i~livG~iiG~~~~R~~~~~ 27 (134)
T PRK11677 6 ALIGLVVGIIIGAVAMRFGNRK 27 (134)
T ss_pred HHHHHHHHHHHHHHHHhhccch
Confidence 3477889999999999986554
No 22
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=33.11 E-value=27 Score=35.36 Aligned_cols=81 Identities=17% Similarity=0.229 Sum_probs=61.0
Q ss_pred Ccccchhhhhccccccc-ccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHH
Q 014553 328 DGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (422)
Q Consensus 328 ~a~IP~~lliLGanL~~-gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l 406 (422)
..+|..+.++-|.+|.. .++..-.++|..+.+...=+++.|+++.++...... + .||-+..=+++..++|+.++.
T Consensus 34 ~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~--~--~~~~l~~Gl~~~~~lPtTv~S 109 (313)
T PF13593_consen 34 KYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSRLFPA--F--LPPELALGLLILACLPTTVSS 109 (313)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--c--CCHHHHHHHHHHhhCCchhhH
Confidence 44466777788888864 344455667888888899999999999988887652 2 356699999999999998776
Q ss_pred H-HHHhh
Q 014553 407 G-KYINN 412 (422)
Q Consensus 407 ~-~i~ql 412 (422)
+ .+|+.
T Consensus 110 ~v~~T~~ 116 (313)
T PF13593_consen 110 SVVLTRL 116 (313)
T ss_pred HHHHHHH
Confidence 5 46655
No 23
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=32.70 E-value=55 Score=24.98 Aligned_cols=24 Identities=25% Similarity=0.670 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 014553 73 WFMPVNVAMTFLIGGILGWIVVKL 96 (422)
Q Consensus 73 w~ipv~~~l~~~ig~~lg~l~~ki 96 (422)
+++.+..++++++|+++||++...
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~ 41 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLP 41 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 577788899999999999988754
No 24
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=32.45 E-value=1.7e+02 Score=30.04 Aligned_cols=109 Identities=21% Similarity=0.261 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHHHHH
Q 014553 11 SMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGIL 89 (422)
Q Consensus 11 ~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~-~~l~~~ig~~l 89 (422)
.++.+-+++=..+|.++. =||+|.||-+++-+ .+..|-+-| .++.+++++++.+=..-=+- .++++.++...
T Consensus 168 ~~~lv~~llP~iiG~iLG-----NLD~~~r~fl~~~~-~~lIPF~~f-~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~~ 240 (314)
T PF03812_consen 168 WMSLVAALLPIIIGMILG-----NLDPDFRKFLAPGV-PILIPFFGF-ALGAGINLSNIIKAGLSGILLGVIVVVVTGIP 240 (314)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCHHHHHHHhcCC-Ceeeehhhh-hhcCCCCHHHHHHhCcchHHHHHHHHHHHhHH
Confidence 345666667778999874 68999999998865 556777766 59999999999997755444 34445556666
Q ss_pred HHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHH
Q 014553 90 GWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAI 127 (422)
Q Consensus 90 g~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl 127 (422)
.++.-|.++-.+.. ...-+.+.+||.-.-|-++-++-
T Consensus 241 ~~~~dr~i~~~~g~-aG~A~sstAGnavatPaaiA~~d 277 (314)
T PF03812_consen 241 LYLADRLILKGNGV-AGAAISSTAGNAVATPAAIAAAD 277 (314)
T ss_pred HHHHHHHHcCCCCc-eeehHHhhhhhhhhhhHHHHHhC
Confidence 67777775322222 23334567899999998875543
No 25
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=32.29 E-value=57 Score=30.13 Aligned_cols=74 Identities=15% Similarity=0.268 Sum_probs=48.0
Q ss_pred hhhhccccccc-ccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHHHHHHhh
Q 014553 334 ITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYINN 412 (422)
Q Consensus 334 ~lliLGanL~~-gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l~~i~ql 412 (422)
+++.+|.++.. -++...-++|.++..++..++++|+++..+.... +++||-+..-+++..+.|.+...-..|.+
T Consensus 7 ~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~-----~~~~~~~~~Gl~l~~~~P~~~~s~~~t~l 81 (187)
T PF01758_consen 7 MMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLL-----LPLSPALALGLLLVAACPGGPASNVFTYL 81 (187)
T ss_dssp HHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HH-----TT--HHHHHHHHHHHHS-B-THHHHHHHH
T ss_pred HHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence 34455555542 1222223357777778899999999999987433 25789999999999999999887777665
No 26
>KOG3547 consensus Bestrophin (Best vitelliform macular dystrophy-associated protein) [General function prediction only]
Probab=30.93 E-value=17 Score=38.97 Aligned_cols=16 Identities=38% Similarity=0.827 Sum_probs=14.2
Q ss_pred hhhhhhhhhhhccccc
Q 014553 304 YVFVSAQFYCFVGWLA 319 (422)
Q Consensus 304 ~~f~~~q~~~~~~~~~ 319 (422)
=+||++||+++|||+-
T Consensus 274 Pi~T~lQFiF~vGWmK 289 (450)
T KOG3547|consen 274 PIMTILQFIFYVGWLK 289 (450)
T ss_pred hhHHHHHHHHHhhHHH
Confidence 3899999999999983
No 27
>PF09964 DUF2198: Uncharacterized protein conserved in bacteria (DUF2198); InterPro: IPR019242 This family of various hypothetical archaeal proteins has no known function.
Probab=28.49 E-value=1.2e+02 Score=24.74 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHhc
Q 014553 81 MTFLIGGILGWIVVKLL 97 (422)
Q Consensus 81 l~~~ig~~lg~l~~ki~ 97 (422)
+.=++|...|++..+-.
T Consensus 51 ~iD~~Sl~aGf~~a~~m 67 (74)
T PF09964_consen 51 FIDAVSLTAGFLYAKKM 67 (74)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34445666666665443
No 28
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=28.01 E-value=1.7e+02 Score=30.65 Aligned_cols=64 Identities=17% Similarity=0.266 Sum_probs=48.8
Q ss_pred hHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCC
Q 014553 37 ADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIGGILGWIVVKLLRPKP 101 (422)
Q Consensus 37 ~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~-~~l~~~ig~~lg~l~~ki~r~p~ 101 (422)
.+..++++.+...+|.| +-|.++|-+++++.+.+.|..-+. ..+....=.+..|+..|.++.++
T Consensus 264 ~~l~~~i~~~~~~~fip-lFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~~g~~~ 328 (397)
T COG0475 264 HELEEKIEPFGDGLFIP-LFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARLLGFSK 328 (397)
T ss_pred HHHHHHHHhHHhHHHHH-HHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 57888888888888888 679999999999999998887333 34444444455788889998553
No 29
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=26.96 E-value=3.3e+02 Score=24.15 Aligned_cols=95 Identities=17% Similarity=0.271 Sum_probs=51.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChHHHhhccchhhh-----hhhhHHHHHhhhcccchhhHHHHHHH
Q 014553 1 MGFWTFFEVASMPIVQVLLISVLGALMATQYWNLLTADARRSLNKMVFT-----VFTPSLMFASLAKTVTLEEIISWWFM 75 (422)
Q Consensus 1 m~~~~l~~~A~~pi~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~-----vF~PaLiFskla~~lt~~~i~~~w~i 75 (422)
|++++-+.+.+...+=--++.++.-+. ..+.+|+|......+.... -..|..+-.+..+....++-.+..-.
T Consensus 61 isf~~a~~~g~~~~~ia~li~~v~~~i---~~~~IdP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (163)
T PF13858_consen 61 ISFGQAFKVGFLISLIAGLISAVFQYI---YFNYIDPDFFENYIEAQIEEMKESGSNPEMIEEQIEQELEMKESFSPFSL 137 (163)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhCHHHHHHHHHHHHHHHHHcccCHhhHHHHHHHHHHHHHhcCcHHH
Confidence 345665555555444444444444434 4678899888777776655 23444444343333322211111333
Q ss_pred HH-HHHHHHHHHHHHHHHHHHhcC
Q 014553 76 PV-NVAMTFLIGGILGWIVVKLLR 98 (422)
Q Consensus 76 pv-~~~l~~~ig~~lg~l~~ki~r 98 (422)
.+ .+.-..+.|.+++.+++-++|
T Consensus 138 ~~~~~~~~l~~G~i~sli~a~i~k 161 (163)
T PF13858_consen 138 AFSGFISNLIFGFIISLIIALILK 161 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 33 566666777788877777766
No 30
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=26.89 E-value=73 Score=32.53 Aligned_cols=75 Identities=12% Similarity=-0.048 Sum_probs=55.7
Q ss_pred hhhhhccccccc-ccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHHHHHHh
Q 014553 333 CITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNIGKYIN 411 (422)
Q Consensus 333 ~~lliLGanL~~-gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l~~i~q 411 (422)
++++.+|-+|.. -.+..--++|.++...+.-++++|+++.++.+.. .+.+|-+..=+++..+.|.+...-.+|.
T Consensus 51 ~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~-----~~~~p~l~~GliLv~~~Pgg~~S~v~T~ 125 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLF-----LRDLFEYIAGLILLGLARCIAMVFVWNQ 125 (328)
T ss_pred HHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHH-----cCCCHHHHHHHHHHHhcchHHHHHHHHH
Confidence 356666677742 2344444568888888999999999999887653 2457889999999999999887666666
Q ss_pred h
Q 014553 412 N 412 (422)
Q Consensus 412 l 412 (422)
+
T Consensus 126 l 126 (328)
T TIGR00832 126 L 126 (328)
T ss_pred H
Confidence 5
No 31
>PRK05326 potassium/proton antiporter; Reviewed
Probab=26.89 E-value=3.8e+02 Score=29.23 Aligned_cols=97 Identities=10% Similarity=0.090 Sum_probs=55.0
Q ss_pred HHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHH-HHHHHHHH-HHHHHHHHHhcCC
Q 014553 22 VLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVN-VAMTFLIG-GILGWIVVKLLRP 99 (422)
Q Consensus 22 ~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~-~~l~~~ig-~~lg~l~~ki~r~ 99 (422)
.+|..++ +......+..++..+..-.++.|. +|..+|-.++++++.+.|..-+. .++..+++ .+..++..+.+|.
T Consensus 252 iaGl~l~--n~~~~~~~~i~~~~~~l~~l~~~~-~Fv~lGl~~~~~~l~~~~~~~l~i~~~l~~vaR~l~v~l~~~~~~~ 328 (562)
T PRK05326 252 LAGLVLG--NRPIRHRHSILRFFDGLAWLAQIG-MFLVLGLLVTPSRLLDIALPALLLALFLILVARPLAVFLSLLPFRF 328 (562)
T ss_pred HHHHHHh--CCcccchHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC
Confidence 4555554 333333343444445445566655 79999999999998876542222 12222233 3334455566777
Q ss_pred CCCCCCeeeEEeecCCcchhHHHHH
Q 014553 100 KPHLEGLVIATCASGNLGNLLLIIV 124 (422)
Q Consensus 100 p~~~~~~vva~~~fgN~~sLPL~lv 124 (422)
|.+++-++--+ |-=|..|+++.
T Consensus 329 ~~~e~~~i~~~---g~RG~v~i~lA 350 (562)
T PRK05326 329 NLREKLFISWV---GLRGAVPIVLA 350 (562)
T ss_pred CHhhhheeeee---cchhHHHHHHH
Confidence 76665444332 55778887765
No 32
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=26.23 E-value=63 Score=28.55 Aligned_cols=22 Identities=18% Similarity=0.543 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q 014553 79 VAMTFLIGGILGWIVVKLLRPK 100 (422)
Q Consensus 79 ~~l~~~ig~~lg~l~~ki~r~p 100 (422)
+++.+++|.++|+++.|++...
T Consensus 2 ~~i~lvvG~iiG~~~~r~~~~~ 23 (128)
T PF06295_consen 2 AIIGLVVGLIIGFLIGRLTSSN 23 (128)
T ss_pred hHHHHHHHHHHHHHHHHHhccc
Confidence 4678899999999999987765
No 33
>PF12534 DUF3733: Leucine-rich repeat containing protein 8 ; InterPro: IPR021040 This entry represents a conserved domain, approximately 60 amino acids in length, found in a number of eukaryotic protein; mostly as a duplicated N-terminal domain in proteins having a C-terminal leucine-rich repeat domain (PF00560 from PFAM). Each domain contains two completely conserved residues (W and Y) that may be functionally important. Most of the proteins in this entry are annotated as leucine-rich repeat containing protein 8, but beyond that there is little known about their function.
Probab=25.97 E-value=90 Score=24.76 Aligned_cols=43 Identities=16% Similarity=0.253 Sum_probs=32.4
Q ss_pred hcccchhhHHHHH--HHHHHHHHHHHHHHHHHHHHH---HhcCCCCCC
Q 014553 61 AKTVTLEEIISWW--FMPVNVAMTFLIGGILGWIVV---KLLRPKPHL 103 (422)
Q Consensus 61 a~~lt~~~i~~~w--~ipv~~~l~~~ig~~lg~l~~---ki~r~p~~~ 103 (422)
-.+.+.+.++-|| ++|=-.++.+.+|.+.|-.-. |+..+|.+.
T Consensus 12 ~~q~~y~~lkPWwdvf~~YL~~~mlmi~v~~~~~ql~~~~~~clP~~~ 59 (65)
T PF12534_consen 12 ENQPCYRILKPWWDVFFDYLVLLMLMIFVFGGTFQLTQDKIVCLPCTS 59 (65)
T ss_pred hhHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhHHhccccceeCCCcc
Confidence 4566889999999 888888888888887775544 666777544
No 34
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=25.59 E-value=86 Score=31.85 Aligned_cols=98 Identities=11% Similarity=0.201 Sum_probs=59.1
Q ss_pred hhcccchhhHHHHHHH-HHHHHHHHHHHHHHHHHHH-HhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcC-----C
Q 014553 60 LAKTVTLEEIISWWFM-PVNVAMTFLIGGILGWIVV-KLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQ-----G 132 (422)
Q Consensus 60 la~~lt~~~i~~~w~i-pv~~~l~~~ig~~lg~l~~-ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~-----~ 132 (422)
++-+++++++.+.+.- .+..++.......+++.+. |.+|+|+++.-.+ +++ .|+|... .
T Consensus 69 lG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Li-a~G-------------tsICG~SAi~A~a 134 (305)
T PF03601_consen 69 LGFRLSFSDILALGWKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILI-AAG-------------TSICGASAIAATA 134 (305)
T ss_pred HCccccHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHH-Hhh-------------cccchHHHHHHHc
Confidence 7899999999999983 3446666777778888888 9999997754332 222 2334321 0
Q ss_pred CCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhhhhccch
Q 014553 133 SPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQLIKQSS 172 (422)
Q Consensus 133 ~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ll~~~~ 172 (422)
.--..+|+.....++-+.++..+. ++.+-+-++.+.-++
T Consensus 135 ~~i~a~~~~~a~ava~V~lfg~va-m~~~P~l~~~l~l~~ 173 (305)
T PF03601_consen 135 PVIKAKEEDVAYAVATVFLFGTVA-MFLYPLLGHALGLSP 173 (305)
T ss_pred ccccCCCCceeeeehHHHHHHHHH-HHHHHHHHHHhCCCH
Confidence 111222223455566666555543 445555666666553
No 35
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=24.77 E-value=2.1e+02 Score=25.84 Aligned_cols=46 Identities=13% Similarity=0.353 Sum_probs=35.0
Q ss_pred HHHHhhhcccchhhHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhcCCC
Q 014553 55 LMFASLAKTVTLEEIIS---WWF-MPVNVAMTFLIGGILGWIVVKLLRPK 100 (422)
Q Consensus 55 LiFskla~~lt~~~i~~---~w~-ipv~~~l~~~ig~~lg~l~~ki~r~p 100 (422)
++-..+|.++|.+++++ +|. .-+..+++.+++.+.+|++.|.++.+
T Consensus 55 iiG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~~~~~~~ 104 (156)
T TIGR03082 55 VIGILIGSRFTREVLAELKRLWPAALLSTVLLLALSALLAWLLARLTGVD 104 (156)
T ss_pred HHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 35678888887766554 443 45556777888999999999999988
No 36
>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]
Probab=23.17 E-value=1.2e+02 Score=31.84 Aligned_cols=113 Identities=21% Similarity=0.241 Sum_probs=72.0
Q ss_pred ccchhhhhhhhHHHHHhhh--cccchhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-CCeeeEEeecCC
Q 014553 43 LNKMVFTVFTPSLMFASLA--KTVTLEEIISWW----FMPVNVAMTFLIGGILGWIVVKLLRPKPHL-EGLVIATCASGN 115 (422)
Q Consensus 43 ls~lv~~vF~PaLiFskla--~~lt~~~i~~~w----~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~-~~~vva~~~fgN 115 (422)
.+-++-.+|.|.+.+..++ -.++.|+.+..| .+.+-++..+.+.-.+|+.+.+.+..|+++ .+..+.+|.+|=
T Consensus 107 ~t~l~~~~~~~gl~~~~ls~g~~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~ 186 (371)
T KOG2718|consen 107 FTWLVTGCFPPGLLSNMLSFGIKLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPG 186 (371)
T ss_pred ceEEEeCccccHHHHHHHHHhcCccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCC
Confidence 3444445566777666555 455888888877 444456667888899999999999999999 799988888764
Q ss_pred cchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhh
Q 014553 116 LGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSY 165 (422)
Q Consensus 116 ~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~ 165 (422)
.+.- ++-++ +...|+..+...+-++--.++...-.||+.|
T Consensus 187 g~~~---~~~~~-------~~~g~v~lsilmT~~stv~avi~~pl~s~~l 226 (371)
T KOG2718|consen 187 GGGN---YLTSK-------RLPGDVTLSILMTTISTVLAVILTPLLSILL 226 (371)
T ss_pred cchh---hheee-------cCCcchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4321 11111 2123334444455444444556666777766
No 37
>PRK01844 hypothetical protein; Provisional
Probab=22.46 E-value=1.4e+02 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 014553 72 WWFMPVNVAMTFLIGGILGWIVVKL 96 (422)
Q Consensus 72 ~w~ipv~~~l~~~ig~~lg~l~~ki 96 (422)
.|+..+..++..++|.+.|+.+.|-
T Consensus 3 ~~~~I~l~I~~li~G~~~Gff~ark 27 (72)
T PRK01844 3 IWLGILVGVVALVAGVALGFFIARK 27 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666667778889999999888753
No 38
>COG2323 Predicted membrane protein [Function unknown]
Probab=22.26 E-value=1.3e+02 Score=29.37 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 014553 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIGGILGWIVV 94 (422)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ 94 (422)
+|.+++..+++++. .--.||++|.|...=|.=.++...++.....+.=...|...+.+++..++..++.|+..
T Consensus 9 ir~vi~~~~l~l~~-------ri~Gkr~isqmt~fd~vv~i~iG~i~~~~i~~~~i~~~~~~~~~~~~~~l~~~l~~l~~ 81 (224)
T COG2323 9 IRSVIGYLILLLLL-------RIMGKRSISQMTIFDFVVMITLGSIAGDAIFDDDVSILPTIIAILTLALLQILLSYLSL 81 (224)
T ss_pred HHHHHHHHHHHHHH-------HHhCcCccccCCHHHHHHHHHHHHHHHHHhhCCCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555555555543 34678999999999999999999999999888877888888888888888888899888
Q ss_pred HhcCCCC
Q 014553 95 KLLRPKP 101 (422)
Q Consensus 95 ki~r~p~ 101 (422)
|--|.-+
T Consensus 82 ks~~~r~ 88 (224)
T COG2323 82 KSRKLRK 88 (224)
T ss_pred ccHHHHH
Confidence 7655553
No 39
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=1.5e+02 Score=23.91 Aligned_cols=25 Identities=24% Similarity=0.586 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 014553 71 SWWFMPVNVAMTFLIGGILGWIVVK 95 (422)
Q Consensus 71 ~~w~ipv~~~l~~~ig~~lg~l~~k 95 (422)
++|.-.+...+..++|.+.|+.++|
T Consensus 2 ~l~lail~ivl~ll~G~~~G~fiar 26 (71)
T COG3763 2 SLWLAILLIVLALLAGLIGGFFIAR 26 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566668889999999999988774
No 40
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=20.96 E-value=9.2e+02 Score=25.19 Aligned_cols=74 Identities=22% Similarity=0.261 Sum_probs=46.2
Q ss_pred hhhhhHHHHHhhhcccc--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHH
Q 014553 49 TVFTPSLMFASLAKTVT--LEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPA 126 (422)
Q Consensus 49 ~vF~PaLiFskla~~lt--~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~s 126 (422)
.++|=-++|+-=|+++. +.++.. +-+-.+++|.+=..++++..|..+.|.+...-+.-.++ +||-=+++--|
T Consensus 224 Ll~TivliF~~qg~~Iv~~p~~i~l---iAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~a---SNnfeLAiAvA 297 (342)
T COG0798 224 LLLTIVLIFAFQGEQIVEQPLDILL---IAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGA---SNNFELAIAVA 297 (342)
T ss_pred HHHHHHHHHHHhHHHHHhChHHHHH---HHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeec---cccHHHHHHHH
Confidence 44555567776676662 233332 33445667777788899999999999776655444444 44455666556
Q ss_pred Hh
Q 014553 127 IC 128 (422)
Q Consensus 127 l~ 128 (422)
+.
T Consensus 298 i~ 299 (342)
T COG0798 298 IA 299 (342)
T ss_pred HH
Confidence 64
No 41
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=20.87 E-value=1.3e+02 Score=30.97 Aligned_cols=100 Identities=23% Similarity=0.281 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 014553 15 VQVLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWF-MPVNVAMTFLIGGILGWIV 93 (422)
Q Consensus 15 ~kVlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~-ipv~~~l~~~ig~~lg~l~ 93 (422)
+.+++...+|..+. | ++++.|+..++= ..+.+|+..|. ++.+++++++.+-.+ =++-.+...++...+++..
T Consensus 174 i~allplliG~~lg----n-l~~~l~~~~~~G-i~~lLp~~~~~-lG~~l~lq~i~~~G~~GilL~~~~~~~t~~~~~~~ 246 (326)
T PRK05274 174 VGAVLPLLVGFILG----N-LDPELRQFLGKA-VPVLIPFFAFA-LGNGIDLGTIITAGLSGILLGVAVVAVTGIPLYLA 246 (326)
T ss_pred hHHHHHHHHHHHHH----h-HHHhhHHHhcCC-cEEEHHHHHHH-HhcceeHhHHHhcCCcchhhhhhHhhccchhhHhH
Confidence 56668899999884 3 788777776665 44499999998 999999999988743 3444444444455557777
Q ss_pred HHhcCCCCCCCCeeeEEeecCCcchhHHH
Q 014553 94 VKLLRPKPHLEGLVIATCASGNLGNLLLI 122 (422)
Q Consensus 94 ~ki~r~p~~~~~~vva~~~fgN~~sLPL~ 122 (422)
.|+++..+...+.- ...+.||.--=|-+
T Consensus 247 ~Rl~~~~~g~~g~a-~~ttaG~aic~pAA 274 (326)
T PRK05274 247 DRLIGGGNGVAGAA-AGSTAGNAVATPAA 274 (326)
T ss_pred hheeecCCCcchHH-HHHHHHHHHHHHHH
Confidence 88886543333232 23345665444444
No 42
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=20.79 E-value=4.2e+02 Score=26.85 Aligned_cols=72 Identities=13% Similarity=0.172 Sum_probs=45.0
Q ss_pred hhhhhHHHHHhhhcccch-----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHH
Q 014553 49 TVFTPSLMFASLAKTVTL-----EEIISWWFMPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLII 123 (422)
Q Consensus 49 ~vF~PaLiFskla~~lt~-----~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~l 123 (422)
...+-.++++...++..- -+......+-+..+....+...++|...|.+|.+++++--++-|++- .|+|+++
T Consensus 197 ~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~r~~~~~~~d~iA~~F~gs~---Ksl~~gv 273 (313)
T PF13593_consen 197 QLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVLGWLAARLLGFSRPDRIAVLFCGSQ---KSLALGV 273 (313)
T ss_pred HHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChhhEEEEEEEcCc---CcchhHH
Confidence 334455566666555221 12233444555566677788899999999999999887666666653 3444444
No 43
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism]
Probab=20.54 E-value=78 Score=34.30 Aligned_cols=68 Identities=22% Similarity=0.319 Sum_probs=54.2
Q ss_pred HHHHHHHHHHHHhhccCCCChHHHhhccchhhhhhhhHHHHHhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 014553 17 VLLISVLGALMATQYWNLLTADARRSLNKMVFTVFTPSLMFASLAKTVTLEEIISWWFMPVNVAMTFLIG 86 (422)
Q Consensus 17 Vlli~~~G~~lA~~~~~iL~~~~~r~ls~lv~~vF~PaLiFskla~~lt~~~i~~~w~ipv~~~l~~~ig 86 (422)
..|...+|.=.| +|.|++++-.|+.+++.-=.+.+|..+|.-+.+++ .+|..-.-.+|+..++...+|
T Consensus 94 ~VLv~mLGigvA-E~SGll~alm~~~~~~~pk~llt~~vvfigi~s~~-asDaayVVlpPlaAmiF~a~G 161 (516)
T COG2978 94 TVLVVMLGIGVA-ERSGLLSALMRKLLNKVPKRLLTFTVVFIGILSHI-ASDAAYVVLPPLAAMIFIALG 161 (516)
T ss_pred HHHHHHHhhhhh-hhcccHHHHHHHHHhhcchHHHhhHHHHHHHHHHH-HhhcceeEecchHHHHHHHhC
Confidence 344455565557 69999999999999999999999999999888875 456666667888888776654
Done!