Query 014553
Match_columns 422
No_of_seqs 112 out of 250
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 13:40:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014553.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014553hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 91.1 1.2 4E-05 44.0 10.6 80 75-162 230-309 (332)
2 3zux_A Transporter, ASBTNM; tr 89.8 0.17 5.9E-06 50.0 3.2 79 328-412 46-125 (332)
3 4f4l_A ION transport protein; 17.6 2.3E+02 0.0077 22.9 5.7 54 113-166 36-91 (112)
4 1wrg_A LH-1, light-harvesting 12.7 2.3E+02 0.0079 20.7 3.9 37 63-99 10-46 (55)
5 1vf5_F Protein PET M; photosyn 6.7 6E+02 0.021 16.8 4.1 24 75-98 8-31 (35)
6 1q90_M Cytochrome B6F complex 6.6 6.4E+02 0.022 17.1 4.4 25 74-98 8-32 (39)
7 1nkz_B Light-harvesting protei 6.0 7.2E+02 0.025 17.0 5.3 37 63-99 2-38 (41)
8 3rvy_A ION transport protein; 5.8 1E+03 0.035 21.5 6.6 52 115-166 177-233 (285)
9 2oyy_A Hexameric cytochrome; a 5.4 2.5E+02 0.0087 21.7 1.5 15 403-417 61-75 (76)
10 2nwl_A GLTPH, glutamate sympor 5.4 9.2E+02 0.032 24.0 6.2 54 49-102 55-112 (422)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=91.11 E-value=1.2 Score=43.96 Aligned_cols=80 Identities=16% Similarity=0.155 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCeeeEEeecCCcchhHHHHHHHHhhcCCCCCCCchhhhhhhHHHHHHHHH
Q 014553 75 MPVNVAMTFLIGGILGWIVVKLLRPKPHLEGLVIATCASGNLGNLLLIIVPAICHEQGSPFGNRDVCSSVGLSYASFSMA 154 (422)
Q Consensus 75 ipv~~~l~~~ig~~lg~l~~ki~r~p~~~~~~vva~~~fgN~~sLPL~lv~sl~~~~~~pfg~~d~~~~rG~aY~~~~~~ 154 (422)
+-+..++.+.+++.+||.+.|.+|.+++.+.-+.-.|+..|+ .+-+.+..+. |+++....--...|-.+-..
T Consensus 230 v~~~~~l~~~~~~~lg~~~~r~~~~~~~~~~ti~~e~G~qNs-~lai~lA~~~-------F~~~p~~alp~~iy~~~q~i 301 (332)
T 3zux_A 230 IFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNS-GLAAALAAAH-------FAAAPVVAVPGALFSVWHNI 301 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHCCCH-HHHHHHHHHH-------STTCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHhHhhhhhhhhhhccH-HHHHHHHHHH-------cCCCchHHHHHHHHHHHHHH
Confidence 344567788999999999999999999888777776888998 3444444333 54222233334456555445
Q ss_pred HHHHHHHH
Q 014553 155 LGGFFIWS 162 (422)
Q Consensus 155 ~g~i~~ws 162 (422)
.+.++.+-
T Consensus 302 ~~~~la~~ 309 (332)
T 3zux_A 302 SGSLLATY 309 (332)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55555443
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=89.78 E-value=0.17 Score=50.01 Aligned_cols=79 Identities=11% Similarity=0.019 Sum_probs=61.9
Q ss_pred Ccccchhhhhccccccc-ccCCCCCCCceehhhHHHHHHHHhHhHHHHHHHHHHhCCCCCChhHHHHHHhhcCCchhhHH
Q 014553 328 DGTIPCITLILGGNLIQ-GLRSSTLKPLIIIAVVCVRYIALPFIGVWVVKAAAALGFLPSDPLYHYVLMVQFTLPPAMNI 406 (422)
Q Consensus 328 ~a~IP~~lliLGanL~~-gl~~~~~~~~~ii~iv~~R~iilP~igi~iv~~a~k~g~l~~DPl~~fvl~L~~~~PpA~~l 406 (422)
..++.++++..|.++.. .++..--++|.+....+.+++++|+++..+.+.. +.||.+...+++..+.|++.+.
T Consensus 46 ~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~------~l~~~~~~Glil~~~~P~~~~s 119 (332)
T 3zux_A 46 PWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL------NLPAEIAVGVILVGCCPGGTAS 119 (332)
T ss_dssp HHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHT------TCCHHHHHHHHHHHHSCCCTHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHh------CCChHHHHHHHHHhcCCchhHH
Confidence 45677888899999874 2222223457777788999999999999887643 5699999999999999999888
Q ss_pred HHHHhh
Q 014553 407 GKYINN 412 (422)
Q Consensus 407 ~~i~ql 412 (422)
..+|++
T Consensus 120 ~v~t~~ 125 (332)
T 3zux_A 120 NVMTYL 125 (332)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777776
No 3
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=17.58 E-value=2.3e+02 Score=22.93 Aligned_cols=54 Identities=11% Similarity=0.020 Sum_probs=31.4
Q ss_pred cCCcchhHHHHHHHHhhcC--CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHhhhh
Q 014553 113 SGNLGNLLLIIVPAICHEQ--GSPFGNRDVCSSVGLSYASFSMALGGFFIWSYSYQ 166 (422)
Q Consensus 113 fgN~~sLPL~lv~sl~~~~--~~pfg~~d~~~~rG~aY~~~~~~~g~i~~ws~g~~ 166 (422)
|+|.++=-+.+.+-++.|+ +.-..+.......+..|+..+..+|+++.-..-..
T Consensus 36 F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfia 91 (112)
T 4f4l_A 36 FGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIG 91 (112)
T ss_dssp HSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6676666666667776543 11111111112345678888888888888776544
No 4
>1wrg_A LH-1, light-harvesting protein B-880, beta chain; membrane protein, pigment binding, photosynthesis; NMR {Rhodospirillum rubrum}
Probab=12.74 E-value=2.3e+02 Score=20.72 Aligned_cols=37 Identities=16% Similarity=0.213 Sum_probs=33.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014553 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (422)
Q Consensus 63 ~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~ 99 (422)
-+|.++.++++-+.+.....|..=++++.+++...|+
T Consensus 10 GLT~~EAqEfH~~f~~~~~~F~~iAvvAH~L~~~wrP 46 (55)
T 1wrg_A 10 GITEGEAKEFHKIFTSSILVFFGVAAFAHLLVWIWRP 46 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999889999999988885
No 5
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=6.69 E-value=6e+02 Score=16.85 Aligned_cols=24 Identities=17% Similarity=0.173 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Q 014553 75 MPVNVAMTFLIGGILGWIVVKLLR 98 (422)
Q Consensus 75 ipv~~~l~~~ig~~lg~l~~ki~r 98 (422)
+.+.....+++|..+|+++-|+-+
T Consensus 8 ~A~i~~~LvLvGla~Gf~LLkiqg 31 (35)
T 1vf5_F 8 AALLSFGLIFVGWGLGVLLLKIQG 31 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHhheeec
Confidence 455566678889999999988754
No 6
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=6.61 E-value=6.4e+02 Score=17.11 Aligned_cols=25 Identities=12% Similarity=0.293 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q 014553 74 FMPVNVAMTFLIGGILGWIVVKLLR 98 (422)
Q Consensus 74 ~ipv~~~l~~~ig~~lg~l~~ki~r 98 (422)
-+.......+++|..+|+++-|+-+
T Consensus 8 ~~A~i~~~L~LvGla~Gf~LLkiqg 32 (39)
T 1q90_M 8 GTALTMVGMTLVGLAIGFVLLRVES 32 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 3555566778889999999988753
No 7
>1nkz_B Light-harvesting protein B-800/850, beta chain; light harvesting complex II, trans-membrane helices, rhodopi glucoside; HET: CXM RG1 BOG BCL; 2.00A {Rhodoblastus acidophilus} SCOP: f.3.1.1 PDB: 1kzu_B* 2fkw_B* 1ijd_B*
Probab=5.95 E-value=7.2e+02 Score=16.99 Aligned_cols=37 Identities=16% Similarity=0.104 Sum_probs=31.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014553 63 TVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (422)
Q Consensus 63 ~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~ 99 (422)
.+|-++.+|.-=+.+.....|..=++++.+++...||
T Consensus 2 gLT~~EA~EfH~~~~~~~~~F~~iA~vAH~l~w~wrP 38 (41)
T 1nkz_B 2 TLTAEQSEELHKYVIDGTRVFLGLALVAHFLAFSATP 38 (41)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4788888998888888888888888889999988886
No 8
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=5.85 E-value=1e+03 Score=21.47 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=30.0
Q ss_pred CcchhHHHHHHHHhhcCCCCCC-Cc-hhhhhh---hHHHHHHHHHHHHHHHHHhhhh
Q 014553 115 NLGNLLLIIVPAICHEQGSPFG-NR-DVCSSV---GLSYASFSMALGGFFIWSYSYQ 166 (422)
Q Consensus 115 N~~sLPL~lv~sl~~~~~~pfg-~~-d~~~~r---G~aY~~~~~~~g~i~~ws~g~~ 166 (422)
|-+|+|-++..+..--.+.-|| +- ..+... |.-|+..+..++++...+.-..
T Consensus 177 ~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~a 233 (285)
T 3rvy_A 177 WFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVA 233 (285)
T ss_dssp HHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHH
Confidence 6778888887655443444455 42 112222 3467777777777777665433
No 9
>2oyy_A Hexameric cytochrome; all helical, unknown function; HET: HEM; 2.50A {Silicibacter pomeroyi}
Probab=5.39 E-value=2.5e+02 Score=21.73 Aligned_cols=15 Identities=20% Similarity=0.350 Sum_probs=7.9
Q ss_pred hhHHHHHHhhhccee
Q 014553 403 AMNIGKYINNNIHWR 417 (422)
Q Consensus 403 A~~l~~i~ql~~~w~ 417 (422)
|+.-++++..|++|+
T Consensus 61 A~~F~TiAAANnyWr 75 (76)
T 2oyy_A 61 ATHFQTIAAANDYWK 75 (76)
T ss_dssp HHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHhhhhh
Confidence 444555555566664
No 10
>2nwl_A GLTPH, glutamate symport protein; alpha helical, membrane protein, helical hairpin, unwound RE transport protein; HET: PLM; 2.96A {Pyrococcus horikoshii} PDB: 2nww_A* 1xfh_A* 2nwx_A* 3v8g_A 3v8f_A 3kbc_A
Probab=5.37 E-value=9.2e+02 Score=24.01 Aligned_cols=54 Identities=20% Similarity=0.253 Sum_probs=41.7
Q ss_pred hhhhhHHHHHhhhcccc-h--hhHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 014553 49 TVFTPSLMFASLAKTVT-L--EEIISW-WFMPVNVAMTFLIGGILGWIVVKLLRPKPH 102 (422)
Q Consensus 49 ~vF~PaLiFskla~~lt-~--~~i~~~-w~ipv~~~l~~~ig~~lg~l~~ki~r~p~~ 102 (422)
....|=|+|..+...+. . +++.++ +-.-.++.+++.++.++|.++..++++-..
T Consensus 55 kmiv~PLVf~siv~gia~l~~~~~gri~~~ti~~~~~tt~iA~~igl~~~~~~~pg~g 112 (422)
T 2nwl_A 55 KMLVMPIVFASLVVGAASISPARLGRVGVKIVVYYLLTSAFAVTLGIIMARLFNPGAG 112 (422)
T ss_dssp HHHHHHHHHHHHHHHTTSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCS
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 45567788888888774 4 556554 457778999999999999999999987643
Done!