Query 014553
Match_columns 422
No_of_seqs 112 out of 250
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 13:40:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014553.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014553hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74d2 f.23.12.1 (D:12-45) IS 24.5 25 0.0018 21.5 2.4 29 259-287 5-33 (34)
2 d1lghb_ f.3.1.1 (B:) Light-har 16.6 1.3E+02 0.0096 19.3 5.3 38 62-99 4-41 (43)
3 d1jo5a_ f.3.1.1 (A:) Light-har 10.7 1.2E+02 0.0089 19.9 3.5 38 62-99 9-46 (48)
4 d1q90g_ f.23.26.1 (G:) PetG su 4.4 1.7E+02 0.012 17.2 1.4 12 269-280 5-16 (30)
5 d1q90r_ f.23.12.1 (R:) ISP sub 4.2 2.4E+02 0.018 17.6 2.2 28 259-286 10-37 (39)
6 d1tm9a_ a.225.1.1 (A:) Hypothe 3.3 3.6E+02 0.027 20.3 3.0 19 368-386 94-112 (137)
7 d2axtt1 f.23.34.1 (T:1-30) Pho 2.9 5.2E+02 0.038 14.7 2.9 21 145-165 3-23 (30)
8 d1q90m_ f.23.25.1 (M:) PetM su 2.6 5E+02 0.037 15.2 2.4 16 81-96 14-29 (34)
9 d2ahma1 a.8.9.1 (A:6-78) Nonst 2.0 1.5E+02 0.011 21.1 -0.9 15 406-420 14-33 (73)
10 d1t6sa1 a.4.5.60 (A:1-85) Segr 2.0 4.2E+02 0.03 18.3 1.7 18 53-71 13-30 (85)
No 1
>d2e74d2 f.23.12.1 (D:12-45) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=24.50 E-value=25 Score=21.50 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=24.9
Q ss_pred HhhcChhHHHHHHHHHHhchhhHHHhhcC
Q 014553 259 EELLAPPTLAAIVGFIFGAVVWLRNLIIG 287 (422)
Q Consensus 259 ~~~~~Pp~~aailg~ivg~iP~Lr~l~~~ 287 (422)
++|||=-+.|++-|...|..-|+-+-|+.
T Consensus 5 rqfmnlltfgt~tg~alg~lypvvkyfip 33 (34)
T d2e74d2 5 RQFMNLLAFGTVTGVALGALYPLVKYFIP 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHhhHHHHHHhhhhhHHhhcCC
Confidence 56788889999999999999998887763
No 2
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=16.58 E-value=1.3e+02 Score=19.30 Aligned_cols=38 Identities=21% Similarity=0.193 Sum_probs=33.7
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014553 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (422)
Q Consensus 62 ~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~ 99 (422)
+.+|-++.+|.-=+.+.....|..-++++.+++.+.||
T Consensus 4 sGLT~~EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 4 SGLTEEEAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999888999999999999999999999886
No 3
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=10.68 E-value=1.2e+02 Score=19.94 Aligned_cols=38 Identities=18% Similarity=0.155 Sum_probs=33.1
Q ss_pred cccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 014553 62 KTVTLEEIISWWFMPVNVAMTFLIGGILGWIVVKLLRP 99 (422)
Q Consensus 62 ~~lt~~~i~~~w~ipv~~~l~~~ig~~lg~l~~ki~r~ 99 (422)
+.||-++.+|+-=+.+.....|..-++++.+++.+.||
T Consensus 9 tGLT~~EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrP 46 (48)
T d1jo5a_ 9 TGLTDEQAQELHSVYMSGLWLFSAVAIVAHLAVYIWRP 46 (48)
T ss_dssp GGGHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45788999999888888888899999999999999886
No 4
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.38 E-value=1.7e+02 Score=17.15 Aligned_cols=12 Identities=25% Similarity=0.520 Sum_probs=8.6
Q ss_pred HHHHHHHhchhh
Q 014553 269 AIVGFIFGAVVW 280 (422)
Q Consensus 269 ailg~ivg~iP~ 280 (422)
.+.|++.|+||-
T Consensus 5 ll~GivlGlipi 16 (30)
T d1q90g_ 5 LLCGIVLGLVPV 16 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHhHHHhhHHH
Confidence 356788888884
No 5
>d1q90r_ f.23.12.1 (R:) ISP subunit from the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.18 E-value=2.4e+02 Score=17.58 Aligned_cols=28 Identities=4% Similarity=-0.115 Sum_probs=20.9
Q ss_pred HhhcChhHHHHHHHHHHhchhhHHHhhc
Q 014553 259 EELLAPPTLAAIVGFIFGAVVWLRNLII 286 (422)
Q Consensus 259 ~~~~~Pp~~aailg~ivg~iP~Lr~l~~ 286 (422)
+++||=-+.|++-+-..|+.-|.-+.|+
T Consensus 10 R~~MNLll~G~~~~~~~g~l~py~~fFv 37 (39)
T d1q90r_ 10 RNIMNLILAGGAGLPITTLALGYGAFFV 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHhccchhhhhhccceeEEec
Confidence 4566666888888888888777777665
No 6
>d1tm9a_ a.225.1.1 (A:) Hypothetical protein MG354 {Mycoplasma genitalium [TaxId: 2097]}
Probab=3.29 E-value=3.6e+02 Score=20.26 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=13.5
Q ss_pred hHhHHHHHHHHHHhCCCCC
Q 014553 368 PFIGVWVVKAAAALGFLPS 386 (422)
Q Consensus 368 P~igi~iv~~a~k~g~l~~ 386 (422)
|.|..-+.+.++++|++.|
T Consensus 94 ~aiifci~yflyhf~fl~d 112 (137)
T d1tm9a_ 94 PAIIFCVIYFLYHFGFLKD 112 (137)
T ss_dssp HHHHHHHHHHHHHTTCSCC
T ss_pred ceehhhHHHHHHHhccccc
Confidence 3444456678899999885
No 7
>d2axtt1 f.23.34.1 (T:1-30) Photosystem II reaction center protein T, PsbT {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.87 E-value=5.2e+02 Score=14.67 Aligned_cols=21 Identities=10% Similarity=0.341 Sum_probs=14.9
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 014553 145 GLSYASFSMALGGFFIWSYSY 165 (422)
Q Consensus 145 G~aY~~~~~~~g~i~~ws~g~ 165 (422)
.++|+.++.-+-..+.+..-+
T Consensus 3 ~i~yv~ifac~i~lfffaiff 23 (30)
T d2axtt1 3 TITYVFIFACIIALFFFAIFF 23 (30)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHHHh
Confidence 468998888877777665543
No 8
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.63 E-value=5e+02 Score=15.18 Aligned_cols=16 Identities=19% Similarity=0.551 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 014553 81 MTFLIGGILGWIVVKL 96 (422)
Q Consensus 81 l~~~ig~~lg~l~~ki 96 (422)
=.+++|..+|+++-|+
T Consensus 14 g~tl~glaigfvllrv 29 (34)
T d1q90m_ 14 GMTLVGLAIGFVLLRV 29 (34)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhheee
Confidence 3567788888877665
No 9
>d2ahma1 a.8.9.1 (A:6-78) Nonstructural protein 7, NSP7 {SARS coronavirus [TaxId: 227859]}
Probab=2.03 E-value=1.5e+02 Score=21.07 Aligned_cols=15 Identities=13% Similarity=0.282 Sum_probs=10.2
Q ss_pred HHHHHhhhc-----ceeeEE
Q 014553 406 IGKYINNNI-----HWRYLV 420 (422)
Q Consensus 406 l~~i~ql~~-----~w~y~v 420 (422)
++-++|+|. -|.|+|
T Consensus 14 l~~L~~l~veaNSk~waycV 33 (73)
T d2ahma1 14 LSVLQQLRVESSSKLWAQCV 33 (73)
T ss_dssp HHHHHHTTCTTSHHHHHHHH
T ss_pred HHHHHHccHHhhhHHHHHHH
Confidence 456667764 888875
No 10
>d1t6sa1 a.4.5.60 (A:1-85) Segregation and condensation protein B, ScpB {Chlorobium tepidum [TaxId: 1097]}
Probab=2.01 E-value=4.2e+02 Score=18.29 Aligned_cols=18 Identities=28% Similarity=0.545 Sum_probs=9.6
Q ss_pred hHHHHHhhhcccchhhHHH
Q 014553 53 PSLMFASLAKTVTLEEIIS 71 (422)
Q Consensus 53 PaLiFskla~~lt~~~i~~ 71 (422)
=|++|+. ++-+|.++|.+
T Consensus 13 EAlLFas-~~Pls~~~L~~ 30 (85)
T d1t6sa1 13 EALIFSS-EEPVNLQTLSQ 30 (85)
T ss_dssp HHHHHHC-SSCBCHHHHHH
T ss_pred HHHHHhc-CCCCCHHHHHH
Confidence 3455555 55555555544
Done!