BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 014554
         (422 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3U0B|A Chain A, Crystal Structure Of An Oxidoreductase From Mycobacterium
           Smegmatis
          Length = 454

 Score = 28.9 bits (63), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 14/86 (16%)

Query: 232 GATINDVLFGVVSSGLSRYLDHRSPNALPEGLR--------------ITGLAMVNIRRQP 277
           G+  +D+   VV+SG   +L  +     PE LR              I G   V    + 
Sbjct: 3   GSMASDLFSQVVNSGPGSFLAKQLGVPQPETLRRYRPGDPPLAGSLLIGGSGRVAEPLRT 62

Query: 278 GLQDLSNLMKSNSGTRWGNKFGMLLL 303
            L D  NL+ +N G RW + FG ++ 
Sbjct: 63  ALADDYNLVSNNIGGRWADSFGGVVF 88


>pdb|3HAD|A Chain A, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
 pdb|3HAD|B Chain B, Biochemical Characterization And Structure Determination
           Of Human Heart Short Chain L-3-Hydroxyacyl Coa
           Dehydrogenase Provide Insight Into Catalytic Mechanism
          Length = 308

 Score = 28.5 bits (62), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 42  DAVMSSIMVRHPRFRSVLVRDKRGLEHWRETSVDIDRHFVEVHDSTSVNDYVAGLSFSSP 101
           +A++ ++ V++  F+ +   DKR  EH    S         + ++T+  D  AGL F +P
Sbjct: 106 EAIVENLKVKNELFKRL---DKRAAEHTIFASNTSSLQITSIANATTRQDRFAGLHFFNP 162

Query: 102 L 102
           +
Sbjct: 163 V 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.137    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,598,236
Number of Sequences: 62578
Number of extensions: 507373
Number of successful extensions: 1058
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1058
Number of HSP's gapped (non-prelim): 6
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)