BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014555
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3TXM|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Gd(3+) Complex
pdb|3TXN|A Chain A, Crystal Structure Of Rpn6 From Drosophila Melanogaster,
Native Data
Length = 394
Score = 355 bits (910), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 177/384 (46%), Positives = 249/384 (64%), Gaps = 1/384 (0%)
Query: 38 SSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVA 97
+ E +R+KE I + +L +QE +A++L +L+ RPF S I KAK AK+VR ++D
Sbjct: 10 NDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFL 69
Query: 98 KIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKXX 157
+ + +++ LCK+ ++W + EKRTFLRQ +EARL AL ++ YTEAL L L++
Sbjct: 70 DMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLREL 129
Query: 158 XXXXXXXXXXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAQQGTIDLQSGIL 217
+ +L IY PP QG +DLQSGIL
Sbjct: 130 KKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGIL 189
Query: 218 HA-EEKDYKTAYSYXXXXXXXXNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGL 276
HA +E+D+KTA+SY ++++ +A+ SLKYMLLCKIM+ Q+DDV ++S K +
Sbjct: 190 HAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAI 249
Query: 277 QYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCR 336
Y G ++DAMK+VA+A KRSL F+ AL+++K +L ED IV HL +LYDT+LEQNLCR
Sbjct: 250 TYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCR 309
Query: 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIY 396
+IEPYSRV++AH+AE I+LP+ VEKKLSQMILDKKF+G LDQG G LI+FE+ D Y
Sbjct: 310 IIEPYSRVQVAHVAESIQLPMPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTY 369
Query: 397 PATLETISNMGKVVDSLFVRSAKI 420
LETI +MGKVVD+L+ ++ K+
Sbjct: 370 ERVLETIQSMGKVVDTLYQKAKKL 393
>pdb|4B4T|Q Chain Q, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 240 bits (613), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/378 (35%), Positives = 205/378 (54%), Gaps = 5/378 (1%)
Query: 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSEL 105
+E +I EL L L + + K+KT K+++ +I+ ++P + +
Sbjct: 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDD 113
Query: 106 QIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKXXXXXXXXXX 165
QI +C++ +++ + EKR FL+ + +LA L + ++Y ++L L+ L++
Sbjct: 114 QIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173
Query: 166 XXXXXXXXXXXHFSLRXXXXXXXXXXXXXXXXXXIYVPPAQQGTIDLQSGILHAEEKDYK 225
+ LR IY P +DL SGILH E+KDYK
Sbjct: 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233
Query: 226 TAYSYXXXXXXXXNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVG 280
TA+SY + L +A LKYMLL KIM++ DDV I+++K + Y
Sbjct: 234 TAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQS 293
Query: 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEP 340
+DAMKAVA+A++ RSL F TAL+ ++ +L D + H ++LYDTLLE NLC++IEP
Sbjct: 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEP 353
Query: 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATL 400
+ VEI+HI+++I L VE KLSQMILDK F G LDQG G L ++E P DA Y + L
Sbjct: 354 FECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSAL 413
Query: 401 ETISNMGKVVDSLFVRSA 418
E + + KVVD LF +++
Sbjct: 414 ELVGQLNKVVDQLFEKAS 431
>pdb|1UFM|A Chain A, Solution Structure Of The Pci Domain
Length = 84
Score = 35.4 bits (80), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Query: 329 LLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388
++E NL + Y+ + + L+E+P EK SQMI + + G +DQ + ++ FE
Sbjct: 16 VIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-IDGIVHFE 74
Query: 389 DPKADA 394
+A
Sbjct: 75 TREASG 80
>pdb|2XE0|B Chain B, Molecular Basis Of Engineered Meganuclease Targeting Of
The Endogenous Human Rag1 Locus
Length = 152
Score = 28.5 bits (62), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 66 LCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQ 115
L N LTQL+PF L K K A +V II+ + + + + +C + Q
Sbjct: 83 LHNFLTQLQPFLKL--KQKQANLVLAIIEQLPSAKASPDAFLEVCTWVDQ 130
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,124,364
Number of Sequences: 62578
Number of extensions: 306518
Number of successful extensions: 888
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 878
Number of HSP's gapped (non-prelim): 8
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)