BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014555
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LP45|PSD11_ARATH 26S proteasome non-ATPase regulatory subunit 11 OS=Arabidopsis
thaliana GN=RPN6A PE=1 SV=1
Length = 419
Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/415 (87%), Positives = 392/415 (94%), Gaps = 1/415 (0%)
Query: 8 ATTDSIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLC 67
ATT++I+ A EA N S+AI++LY+VL+DPSSS EA+R+KE AIT L D L +E R +DL
Sbjct: 6 ATTETISLALEA-NSSEAITILYQVLEDPSSSPEAIRIKEQAITNLCDRLTEEKRGEDLR 64
Query: 68 NLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ 127
LLT+LRPFFSLIPKAKTAKIVRGIIDAVAKIPGT++LQI LCKEMV+WTRAEKRTFLRQ
Sbjct: 65 KLLTKLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTTDLQITLCKEMVEWTRAEKRTFLRQ 124
Query: 128 RVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK 187
RVEARLAALLME++EY EAL LL++LVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK
Sbjct: 125 RVEARLAALLMENKEYVEALALLSTLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK 184
Query: 188 AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAV 247
AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKT YSYFFEAFE+FNAL DPRAV
Sbjct: 185 AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTGYSYFFEAFESFNALGDPRAV 244
Query: 248 FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRD 307
FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGP+LDAMKAVADAHSKRSLKLFE ALRD
Sbjct: 245 FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPDLDAMKAVADAHSKRSLKLFENALRD 304
Query: 308 FKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQM 367
+KAQLE+DPIVHRHLSSLYDTLLEQNLCRLIEP+SRVEIAHIAELI LP+DHVEKKLSQM
Sbjct: 305 YKAQLEDDPIVHRHLSSLYDTLLEQNLCRLIEPFSRVEIAHIAELIGLPLDHVEKKLSQM 364
Query: 368 ILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKIMA 422
ILDKKFAGTLDQG GCLIIFEDPKADAIY ATLETI+NMGKVVDSL+VRSAKIM+
Sbjct: 365 ILDKKFAGTLDQGAGCLIIFEDPKADAIYSATLETIANMGKVVDSLYVRSAKIMS 419
>sp|Q7KLV9|PSD11_DROME 26S proteasome non-ATPase regulatory subunit 11 OS=Drosophila
melanogaster GN=Rpn6 PE=1 SV=1
Length = 422
Score = 447 bits (1149), Expect = e-125, Method: Compositional matrix adjust.
Identities = 216/421 (51%), Positives = 304/421 (72%), Gaps = 1/421 (0%)
Query: 1 MSSSYLPATTDSIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQE 60
M+ + L +++ S ++ L R + + E +R+KE I + +L +QE
Sbjct: 1 MAGATLFERAQALSSVNREEQDSSLLNKLVRDQEGAENDEERIRIKEQGILQQGELYKQE 60
Query: 61 NRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAE 120
+A++L +L+ RPF S I KAK AK+VR ++D + + +++ LCK+ ++W + E
Sbjct: 61 GKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQE 120
Query: 121 KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180
KRTFLRQ +EARL AL ++ YTEAL L L++E+++LDDK LLV++ LLESK + +L
Sbjct: 121 KRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHAL 180
Query: 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFN 239
NLPKA+AALT+ART ANAIY PP QG +DLQSGILHA +E+D+KTA+SYF+EAFE F+
Sbjct: 181 SNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFD 240
Query: 240 ALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLK 299
+++ +A+ SLKYMLLCKIM+ Q+DDV ++S K + Y G ++DAMK+VA+A KRSL
Sbjct: 241 SVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAITYSGRDIDAMKSVAEASHKRSLA 300
Query: 300 LFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDH 359
F+ AL+++K +L ED IV HL +LYDT+LEQNLCR+IEPYSRV++AH+AE I+LP+
Sbjct: 301 DFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLPMPQ 360
Query: 360 VEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAK 419
VEKKLSQMILDKKF+G LDQG G LI+FE+ D Y LETI +MGKVVD+L+ ++ K
Sbjct: 361 VEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKK 420
Query: 420 I 420
+
Sbjct: 421 L 421
>sp|F6XBL2|PSD11_XENTR 26S proteasome non-ATPase regulatory subunit 11 OS=Xenopus
tropicalis GN=psmd11 PE=3 SV=2
Length = 422
Score = 431 bits (1108), Expect = e-120, Method: Compositional matrix adjust.
Identities = 216/410 (52%), Positives = 295/410 (71%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ S+ + +I +L ++ D S EALRVKE +I EL LL + +A +L LL
Sbjct: 12 AQEMLVSDRAASIDILQSIVKRDIQESDEEALRVKEQSILELGGLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W +AEKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLVSLYFDTKRYQEALQLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q +D+QSGI+HA EEKD+KTAYSYF+EAFE ++++ P+A+ +L
Sbjct: 192 SARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGNDSIDSPKAITAL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV ++S K L+Y G + +A+K VA A RSL FE AL D+KA
Sbjct: 252 KYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLANFEKALTDYKA 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+LP VE+KLSQMILD
Sbjct: 312 ELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIDHISSLIKLPKPEVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG G LIIF++P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
>sp|F6P3G4|PS11A_DANRE 26S proteasome non-ATPase regulatory subunit 11A OS=Danio rerio
GN=psmd11a PE=2 SV=1
Length = 421
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 299/410 (72%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ + +I +L+ ++ D EA+RVKE +I EL LL + +A +L LL
Sbjct: 11 AQSLLSTDRNASIDILHAIVKRDVQDDDEEAVRVKEQSILELGGLLAKTGQAAELGGLLK 70
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 71 YVRPFLNSISKAKAARLVRSLLDMFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 130
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 131 RLVSLYFDTKRYQEALQLGSQLLQELKKMDDKALLVELQLLESKTYHALSNLPKARAALT 190
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q +D+QSGI+HA EEKD+KTAYSYF+EAFE +++++ PRA+ +L
Sbjct: 191 SARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPRAITAL 250
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV +IS K L+Y G + +A+K VA A RSL FE AL ++KA
Sbjct: 251 KYMLLCKIMLNSPEDVQSLISGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTEYKA 310
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ELI+L VE+KLSQMILD
Sbjct: 311 ELRDDPIISTHLTKLYDNLLEQNLIRVIEPFSRVQIEHISELIKLSKGDVERKLSQMILD 370
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
+KF G LDQG G LI+F++P D Y A+LETI NM KVVDSL+ ++ K+
Sbjct: 371 QKFHGILDQGEGVLIVFDEPPVDKTYEASLETIQNMSKVVDSLYNKAKKL 420
>sp|Q8BG32|PSD11_MOUSE 26S proteasome non-ATPase regulatory subunit 11 OS=Mus musculus
GN=Psmd11 PE=1 SV=3
Length = 422
Score = 428 bits (1100), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 298/410 (72%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL
Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q T+D+QSGI+HA EEKD+KTAYSYF+EAFE +++++ P+A+ SL
Sbjct: 192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV ++S K L+Y G + +A+K VA A RSL FE AL D++A
Sbjct: 252 KYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRA 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILD
Sbjct: 312 ELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG G LIIF++P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYSKAKKL 421
>sp|F1LMZ8|PSD11_RAT 26S proteasome non-ATPase regulatory subunit 11 OS=Rattus
norvegicus GN=Psmd11 PE=2 SV=2
Length = 422
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 298/410 (72%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL
Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q T+D+QSGI+HA EEKD+KTAYSYF+EAFE +++++ P+A+ SL
Sbjct: 192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV ++S K L+Y G + +A+K VA A RSL FE AL D++A
Sbjct: 252 KYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRA 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILD
Sbjct: 312 ELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG G LIIF++P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
>sp|O00231|PSD11_HUMAN 26S proteasome non-ATPase regulatory subunit 11 OS=Homo sapiens
GN=PSMD11 PE=1 SV=3
Length = 422
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 298/410 (72%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL
Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q T+D+QSGI+HA EEKD+KTAYSYF+EAFE +++++ P+A+ SL
Sbjct: 192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV ++S K L+Y G + +A+K VA A RSL FE AL D++A
Sbjct: 252 KYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRA 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILD
Sbjct: 312 ELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG G LIIF++P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
>sp|Q2KI42|PSD11_BOVIN 26S proteasome non-ATPase regulatory subunit 11 OS=Bos taurus
GN=PSMD11 PE=2 SV=3
Length = 422
Score = 427 bits (1099), Expect = e-119, Method: Compositional matrix adjust.
Identities = 211/410 (51%), Positives = 298/410 (72%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ +I +L+ ++ D + EA++VKE +I EL LL + +A +L LL
Sbjct: 12 AQSLLSTDREASIDILHSIVKRDIQENDEEAVQVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF + I KAK A++VR ++D + + ++ LC E ++W ++EKRTFLRQ +EA
Sbjct: 72 YVRPFLNSISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKSEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLVSLYFDTKRYQEALHLGSQLLRELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q T+D+QSGI+HA EEKD+KTAYSYF+EAFE +++++ P+A+ SL
Sbjct: 192 SARTTANAIYCPPKLQATLDMQSGIIHAAEEKDWKTAYSYFYEAFEGYDSIDSPKAITSL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM++ +DV ++S K L+Y G + +A+K VA A RSL FE AL D++A
Sbjct: 252 KYMLLCKIMLNTPEDVQALVSGKLALRYAGRQTEALKCVAQASKNRSLADFEKALTDYRA 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI+ HL+ LYD LLEQNL R+IEP+SRV+I HI+ LI+L VE+KLSQMILD
Sbjct: 312 ELRDDPIISTHLAKLYDNLLEQNLIRVIEPFSRVQIEHISSLIKLSKADVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG G LIIF++P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEGVLIIFDEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
>sp|F1QGH9|PS11B_DANRE 26S proteasome non-ATPase regulatory subunit 11B OS=Danio rerio
GN=psmd11b PE=2 SV=1
Length = 422
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 214/410 (52%), Positives = 295/410 (71%), Gaps = 3/410 (0%)
Query: 14 AQAKEASNPSDAISMLYRVL--DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLT 71
AQ+ +++ + +I + + ++ D EA+RVKE +I EL LL + +A +L LL
Sbjct: 12 AQSLISTDRNASIDIFHSIVRRDVQEDDEEAVRVKEQSILELGSLLAKTGQAAELGGLLK 71
Query: 72 QLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEA 131
+RPF I KAK A++VR ++D + + ++ LC E ++W +AEKRTFLRQ +EA
Sbjct: 72 FVRPFLISISKAKAARLVRSLLDLFLDMEAATGQEVELCLECIEWAKAEKRTFLRQALEA 131
Query: 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191
RL +L +++ Y EAL L + L++E++++DDK LLV++ LLESK + +L NLPKA+AALT
Sbjct: 132 RLISLYFDTKRYQEALQLESQLLQELKKMDDKALLVEVQLLESKTYHALSNLPKARAALT 191
Query: 192 AARTAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250
+ART ANAIY PP Q +D+QSGI+HA EEKD+KTAYSYFFEAFE +++++ PRAV +L
Sbjct: 192 SARTTANAIYCPPKLQAALDMQSGIIHAAEEKDWKTAYSYFFEAFEGYDSIDSPRAVTAL 251
Query: 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKA 310
KYMLLCKIM+S ++V +IS K GL+Y G + DA+K +A A RSL FE AL ++
Sbjct: 252 KYMLLCKIMLSLPEEVQALISGKLGLRYAGRQTDALKCIAQASKNRSLADFEKALTEYTK 311
Query: 311 QLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370
+L +DPI++ HL+ LYD LLEQNL R+IEP+SRV+I HIA LI+L + VE+KLSQMILD
Sbjct: 312 ELRDDPIINTHLAKLYDNLLEQNLIRVIEPFSRVQITHIAGLIKLSKNDVERKLSQMILD 371
Query: 371 KKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
KKF G LDQG LIIFE+P D Y A LETI NM KVVDSL+ ++ K+
Sbjct: 372 KKFHGILDQGEDVLIIFEEPPVDKTYEAALETIQNMSKVVDSLYNKAKKL 421
>sp|Q54UB5|PSD11_DICDI 26S proteasome non-ATPase regulatory subunit 11 OS=Dictyostelium
discoideum GN=psmD11 PE=2 SV=1
Length = 413
Score = 414 bits (1064), Expect = e-115, Method: Compositional matrix adjust.
Identities = 195/377 (51%), Positives = 273/377 (72%), Gaps = 1/377 (0%)
Query: 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSE 104
+KE AI L+ L + + L LL +RPFF I K KT KIVR ID + +P
Sbjct: 36 IKEEAILRLAKLFVKIGKGDQLPTLLRSVRPFFDKISKPKTDKIVRNFIDIFSTVPDNLT 95
Query: 105 LQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164
I KE +QW + R +LRQR+E +L L+ E+++Y AL+ LT+L+ E++RLDDK
Sbjct: 96 TLIEFVKENIQWCKDTNRIYLRQRLETKLFTLMFEAKDYANALSGLTTLLTEIKRLDDKP 155
Query: 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDY 224
LLV+I L+ES++ +L+N+PKA+AALT+ART AN IY PP Q ID+QSGILH+EEKDY
Sbjct: 156 LLVEIQLVESRIQHALKNIPKARAALTSARTNANTIYCPPKLQAEIDMQSGILHSEEKDY 215
Query: 225 KTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-L 283
KTA+SYFFE++E +++LEDP A+ +LKYMLLCKIM +Q DDV +++ K GL+Y +
Sbjct: 216 KTAFSYFFESYETYDSLEDPFAMKALKYMLLCKIMTNQTDDVHALVNGKIGLKYHNNRSI 275
Query: 284 DAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSR 343
+A+ ++ +H+KRSL +F+ ++F QL +DPI+H HL+ LY LLEQNLCR+IEP+SR
Sbjct: 276 EAITQISKSHAKRSLHMFQEVTKEFSDQLSDDPIIHSHLTELYSNLLEQNLCRIIEPFSR 335
Query: 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETI 403
VEI+HIA+LI+LP+D VE+KLS MILDKK+ G LDQG G LI+FE+ K D ++ +LETI
Sbjct: 336 VEISHIAKLIDLPVDVVERKLSLMILDKKYNGILDQGTGTLIVFEEQKEDKLFNCSLETI 395
Query: 404 SNMGKVVDSLFVRSAKI 420
+ +VVD L+ ++ K+
Sbjct: 396 GALSRVVDLLYEKTNKL 412
>sp|Q9P7S2|RPN6_SCHPO Probable 26S proteasome regulatory subunit rpn6
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rpn6 PE=3 SV=1
Length = 421
Score = 414 bits (1063), Expect = e-115, Method: Compositional matrix adjust.
Identities = 203/406 (50%), Positives = 287/406 (70%), Gaps = 2/406 (0%)
Query: 15 QAKEASNPSDAISMLYRVLDDPSSSSEAL-RVKELAITELSDLLRQENRAQDLCNLLTQL 73
A ++++ AI + VL+ S E + +E A+T LSDL +ENR DL L+ Q
Sbjct: 12 NAVKSNDIEKAIDLYKEVLNKGVSKDEKVANEQEQALTNLSDLYVRENRHNDLAQLVQQS 71
Query: 74 RPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARL 133
RP + KAK+AKIVR +ID + + LQI + + ++W EKRTFLRQ +E +L
Sbjct: 72 RPLMANFSKAKSAKIVRTLIDKFSGEKKSLPLQIEVANDCIKWAIKEKRTFLRQALETKL 131
Query: 134 AALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAA 193
+L ++ YT+A+ L+ +L+ E++R+DDK+LL ++ LLESK++ ++RN+PKA+A+LTAA
Sbjct: 132 ISLYYDNSSYTDAINLINTLLSELKRMDDKMLLTEVHLLESKVYHAIRNIPKARASLTAA 191
Query: 194 RTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL-EDPRAVFSLKY 252
+T+ANA+Y PP QG +DLQSGILHA++ D+KTAYSYF+EA+E F +L +D +A+ SLKY
Sbjct: 192 KTSANAVYCPPMLQGNLDLQSGILHADDMDFKTAYSYFYEAYEGFTSLDDDKKALSSLKY 251
Query: 253 MLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQL 312
MLL +IM++ +V +++ K ++Y G +++AM+A+A AH RSL FE AL+D+K +L
Sbjct: 252 MLLSQIMLNSVSEVKSLLTGKHAIRYAGRDIEAMRAIAQAHENRSLADFEKALQDYKPEL 311
Query: 313 EEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKK 372
DPI+ HLSSLYD LLEQNL R++EP+SRVE++HIAELI L VE KLSQMILDK
Sbjct: 312 ASDPIIRSHLSSLYDNLLEQNLLRVVEPFSRVEVSHIAELIGLSTVQVEGKLSQMILDKI 371
Query: 373 FAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSA 418
F G LDQG GCLI++++P+ D Y A LE I NMG VVD L A
Sbjct: 372 FYGILDQGSGCLIVYDEPQQDKTYEAALEVIKNMGTVVDLLIENKA 417
>sp|Q20938|PS11A_CAEEL Probable 26S proteasome regulatory subunit rpn-6.1
OS=Caenorhabditis elegans GN=rpn-6.1 PE=2 SV=2
Length = 438
Score = 362 bits (928), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 188/403 (46%), Positives = 280/403 (69%), Gaps = 3/403 (0%)
Query: 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI 80
N + I L ++ P+S + ++ KE +I EL ++L Q + ++L N++ Q RPF +
Sbjct: 35 NDQNVIRHLTNLVKSPASGDDDIKKKEDSIMELGNILAQNKQTEELRNMIEQTRPFLVSL 94
Query: 81 PKAKTAKIVRGIIDAVAKIPGT-SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLME 139
KAK AK+VR ++D KI ++++ L KE +QW + RTFLRQ + ARL L +
Sbjct: 95 GKAKAAKLVRDLVDLCLKIDDQDGDIKVGLVKECIQWATEQNRTFLRQTLTARLVRLYND 154
Query: 140 SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199
+ YT+AL L L++E++++DDK +LV+++L ESK +++L N+ +A+A+LT ART ANA
Sbjct: 155 LQRYTQALPLAADLIRELKKVDDKDVLVEVELEESKAYYNLSNIGRARASLTGARTTANA 214
Query: 200 IYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDP-RAVFSLKYMLLCK 257
IYV P Q +DLQSGILHA +EKD+KTA+SYF+EAFE ++++++ A+ +LKYMLLCK
Sbjct: 215 IYVNPRMQAALDLQSGILHAADEKDFKTAFSYFYEAFEGYDSVDEKVSALTALKYMLLCK 274
Query: 258 IMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPI 317
+M+ D+V ++S+K L+Y G +LDAMKA+A A KRSLK F+ A F +L+ DP+
Sbjct: 275 VMLDLPDEVNSLLSAKLALKYNGSDLDAMKAIAAAAQKRSLKDFQVAFGSFPQELQMDPV 334
Query: 318 VHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL 377
V +H SL + +LE++LCR+IEPYS V+I H+A+ I + VEKKLSQMILD+K +G+L
Sbjct: 335 VRKHFHSLSERMLEKDLCRIIEPYSFVQIEHVAQQIGIDRSKVEKKLSQMILDQKLSGSL 394
Query: 378 DQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420
DQG G LI+FE D Y L+TI MG+VVD+L+ ++KI
Sbjct: 395 DQGEGMLIVFEIAVPDEAYQTALDTIHAMGEVVDALYSNASKI 437
>sp|Q12377|RPN6_YEAST 26S proteasome regulatory subunit RPN6 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=RPN6 PE=1 SV=3
Length = 434
Score = 324 bits (831), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 167/378 (44%), Positives = 247/378 (65%), Gaps = 5/378 (1%)
Query: 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSEL 105
+E +I EL L L + + K+KT K+++ +I+ ++P + +
Sbjct: 54 QETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDD 113
Query: 106 QIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLL 165
QI +C++ +++ + EKR FL+ + +LA L + ++Y ++L L+ L++E ++LDDK
Sbjct: 114 QIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPS 173
Query: 166 LVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYK 225
LVD+ LLESK++ LRNL K+KA+LTAARTAAN+IY P +DL SGILH E+KDYK
Sbjct: 174 LVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYK 233
Query: 226 TAYSYFFEAFEAFNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVG 280
TA+SYFFE+FE+++ L +A LKYMLL KIM++ DDV I+++K + Y
Sbjct: 234 TAFSYFFESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQS 293
Query: 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEP 340
+DAMKAVA+A++ RSL F TAL+ ++ +L D + H ++LYDTLLE NLC++IEP
Sbjct: 294 RGIDAMKAVAEAYNNRSLLDFNTALKQYEKELMGDELTRSHFNALYDTLLESNLCKIIEP 353
Query: 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATL 400
+ VEI+HI+++I L VE KLSQMILDK F G LDQG G L ++E P DA Y + L
Sbjct: 354 FECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVYETPNQDATYDSAL 413
Query: 401 ETISNMGKVVDSLFVRSA 418
E + + KVVD LF +++
Sbjct: 414 ELVGQLNKVVDQLFEKAS 431
>sp|A8X379|PS11B_CAEBR Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis briggsae GN=rpn-6.2 PE=3 SV=1
Length = 411
Score = 273 bits (697), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 152/392 (38%), Positives = 246/392 (62%), Gaps = 11/392 (2%)
Query: 37 SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIID-- 94
SS +E R ++L I + L +E + L+ ++ F+ L+ KA+ +K++R I++
Sbjct: 22 SSEAEVKRCEDL-ILSYAKQLAKEKDITGIRTLVKSIQNFYDLVGKARASKLIRDIVEFA 80
Query: 95 -AVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSL 153
V + E +I L K ++W + KR FLR+ ++ARL L + RE+TE L L
Sbjct: 81 LTVEQGKQEKEEKIDLLKNCIEWATSNKREFLRRSLQARLVRLYNDVREFTEGQKLGQEL 140
Query: 154 VKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQ 213
KE+++L+D+ LL+++ + ESK F+L NL KAK AL A+T++N+ + P Q +D+Q
Sbjct: 141 SKELKKLEDRELLIEVSIEESKCAFNLNNLSKAKTALLTAKTSSNSAFASPQLQAAVDMQ 200
Query: 214 SGILH-AEEKDYKTAYSYFFEAFEAFNALEDP-RAVFSLKYMLLCKIMVSQADDVAGIIS 271
SG+L+ AEE+DYKT++SYF+EAFE + ++ D A +LKYM+LCKIM+++ + + ++S
Sbjct: 201 SGVLYSAEERDYKTSFSYFYEAFEGYGSIGDKVNATGALKYMILCKIMLNETEQIPAMLS 260
Query: 272 SKAGLQY-VGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLL 330
+K L Y P + A++A+ADA KRSLK F AL + K +L ED +V H +L T+L
Sbjct: 261 TKEVLPYNTSPRIVAIRAMADAFRKRSLKDFMKALEEHKKELVEDKVVAVHSQNLERTML 320
Query: 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390
E+ + R+IEPYS +E+++IA +I + + EK +++MILDKK G++DQ ++I+ P
Sbjct: 321 EKEISRVIEPYSEIELSYIARVIGMTVPPTEKAIARMILDKKLMGSIDQHGDTVVIY--P 378
Query: 391 KADAI--YPATLETISNMGKVVDSLFVRSAKI 420
KA A + L TI + K VD + R+ I
Sbjct: 379 KAGATKQFTRALTTIRELTKTVDVSYSRTKVI 410
>sp|P34481|PS11B_CAEEL Probable 26S proteasome regulatory subunit rpn-6.2
OS=Caenorhabditis elegans GN=rpn-6.2 PE=3 SV=3
Length = 416
Score = 265 bits (678), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 151/395 (38%), Positives = 247/395 (62%), Gaps = 18/395 (4%)
Query: 37 SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAV 96
SS +E R ++L I S L +E + L+ +R F+ L+ KA+ +K++R I++
Sbjct: 22 SSEAEVKRCEDL-ILSYSRQLAKEKDITGIRTLVESIRSFYDLVGKARASKLIRDIVEHA 80
Query: 97 AKIP---------GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEAL 147
I G E +I L + W + KR FLR+ ++ARL L + R++T A
Sbjct: 81 LTIDQGVGPALDHGKKE-KIDLLTNCIGWATSNKREFLRRSLQARLIRLYNDIRDFTNAQ 139
Query: 148 TLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQ 207
L L KE+++L+D+ LL+++ + ESK F+L NL KAK AL A+T N+ + P Q
Sbjct: 140 KLAQDLSKELKKLEDRELLIEVSVEESKSSFNLNNLAKAKTALLTAKTNTNSAFASPQLQ 199
Query: 208 GTIDLQSGILH-AEEKDYKTAYSYFFEAFEAFNALEDP-RAVFSLKYMLLCKIMVSQADD 265
++D+QSG+L+ AEE+DYKT++SYF+EAFE F ++ D A +LKYM+LCKIM+++ +
Sbjct: 200 ASVDMQSGVLYSAEERDYKTSFSYFYEAFEGFASIGDKINATSALKYMILCKIMLNETEQ 259
Query: 266 VAGIISSKAGLQYV-GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSS 324
+AG++++K + Y P + A++++ADA KRSLK F AL + K +L ED +V H +
Sbjct: 260 LAGLLAAKEIVAYQKSPRIIAIRSMADAFRKRSLKDFVKALAEHKIELVEDKVVAVHSQN 319
Query: 325 LYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384
L +LE+ + R+IEPYS +E+++IA +I + + VE+ +++MILDKK G++DQ +
Sbjct: 320 LERNMLEKEISRVIEPYSEIELSYIARVIGMTVPPVERAIARMILDKKLMGSIDQHGDTV 379
Query: 385 IIFEDPKADAI--YPATLETISNMGKVVDSLFVRS 417
+++ PKADA + +L+TI + K VD + R+
Sbjct: 380 VVY--PKADAANQFTRSLKTIRELTKTVDVSYSRT 412
>sp|Q54HL6|CSN2_DICDI COP9 signalosome complex subunit 2 OS=Dictyostelium discoideum
GN=csn2 PE=1 SV=1
Length = 449
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 89/333 (26%), Positives = 161/333 (48%), Gaps = 22/333 (6%)
Query: 62 RAQDLCNLLTQLRPFFSLIPKAKTAKIV-RGIIDAVAKIPGTSELQIALCKEMVQWT--- 117
R D N+L + F + ++ + +GI + + ++ +++ + +++ T
Sbjct: 83 RIGDFDNMLESFKKFLPYTKSSASSNYIEKGINSVLDMVSSSNTIELDMIQKVFDLTLKS 142
Query: 118 ----RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVR---RLDDKL---LLV 167
+ E+ F R +LA LL E EY +L L K DD+ LV
Sbjct: 143 LLDTKNERVWF---RTNLKLAKLLFEKAEYGRLAKILRDLHKSCELEDGTDDQKKGSQLV 199
Query: 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTA 227
DI LE +++ +N K K A +AI P G I G +H EK+++ A
Sbjct: 200 DIYALEIQMYTETKNNKKLKDLYKKALEIKSAI-PHPRIMGIIRECGGKMHMAEKEWEKA 258
Query: 228 YSYFFEAFEAFNALEDPRAVFSLKYMLL-CKIMVSQADDVAGIISSKAGLQYVGPELDAM 286
++ FFEAF+ ++ + R + LKY++L C +M+S + S++A P++ AM
Sbjct: 259 HTDFFEAFKNYDEAGNSRRIQCLKYLVLACMLMLST---INPFDSTEAKPYKNDPDILAM 315
Query: 287 KAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEI 346
+ A+ K + FE L+D + + +DP + ++ L + Q L +L++PY+R+ I
Sbjct: 316 TNLVMAYEKNDIYAFEKILKDNRKTIMDDPFIRMYIEDLLRNIRTQVLLKLLKPYTRIRI 375
Query: 347 AHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379
+ I++ + +P VE L +ILD K G++DQ
Sbjct: 376 SFISKELNIPSSDVESLLVSLILDNKIRGSIDQ 408
>sp|P61203|CSN2_RAT COP9 signalosome complex subunit 2 OS=Rattus norvegicus GN=Cops2
PE=2 SV=1
Length = 443
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 20/395 (5%)
Query: 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQL 73
++A + +P A+S +VL+ E L +++ + + ++ +
Sbjct: 39 SKALKEDDPKAALSSFQKVLELEGEKGE------WGFKALKQMIKINFKLTNFPEMMNRY 92
Query: 74 RPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTFLRQRV 129
+ + I A T I+++ TS+ Q+ L +E + T + K L +
Sbjct: 93 KQLLTYIRSAVTRNYSEKSINSILDYISTSK-QMDLLQEFYETTLEALKDAKNDRLWFKT 151
Query: 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKL----LLVDIDLLESKLHFSLRNL 183
+L L +E EY + +L L + + D D L L++I LE +++ + +N
Sbjct: 152 NTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 211
Query: 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED 243
K KA + +AI P G I G +H E +++ A++ FFEAF+ ++
Sbjct: 212 KKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 270
Query: 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFET 303
PR LKY++L +++ + S +A PE+ AM + A+ + FE
Sbjct: 271 PRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEK 328
Query: 304 ALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363
L+ + + +DP + H+ L + Q L +LI+PY+R+ I I++ + + + VE
Sbjct: 329 ILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESL 388
Query: 364 LSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398
L Q ILD G +DQ L + + A Y A
Sbjct: 389 LVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423
>sp|P61202|CSN2_MOUSE COP9 signalosome complex subunit 2 OS=Mus musculus GN=Cops2 PE=1
SV=1
Length = 443
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 20/395 (5%)
Query: 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQL 73
++A + +P A+S +VL+ E L +++ + + ++ +
Sbjct: 39 SKALKEDDPKAALSSFQKVLELEGEKGE------WGFKALKQMIKINFKLTNFPEMMNRY 92
Query: 74 RPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTFLRQRV 129
+ + I A T I+++ TS+ Q+ L +E + T + K L +
Sbjct: 93 KQLLTYIRSAVTRNYSEKSINSILDYISTSK-QMDLLQEFYETTLEALKDAKNDRLWFKT 151
Query: 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKL----LLVDIDLLESKLHFSLRNL 183
+L L +E EY + +L L + + D D L L++I LE +++ + +N
Sbjct: 152 NTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 211
Query: 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED 243
K KA + +AI P G I G +H E +++ A++ FFEAF+ ++
Sbjct: 212 KKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 270
Query: 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFET 303
PR LKY++L +++ + S +A PE+ AM + A+ + FE
Sbjct: 271 PRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEK 328
Query: 304 ALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363
L+ + + +DP + H+ L + Q L +LI+PY+R+ I I++ + + + VE
Sbjct: 329 ILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESL 388
Query: 364 LSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398
L Q ILD G +DQ L + + A Y A
Sbjct: 389 LVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423
>sp|P61201|CSN2_HUMAN COP9 signalosome complex subunit 2 OS=Homo sapiens GN=COPS2 PE=1
SV=1
Length = 443
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 20/395 (5%)
Query: 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQL 73
++A + +P A+S +VL+ E L +++ + + ++ +
Sbjct: 39 SKALKEDDPKAALSSFQKVLELEGEKGE------WGFKALKQMIKINFKLTNFPEMMNRY 92
Query: 74 RPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTFLRQRV 129
+ + I A T I+++ TS+ Q+ L +E + T + K L +
Sbjct: 93 KQLLTYIRSAVTRNYSEKSINSILDYISTSK-QMDLLQEFYETTLEALKDAKNDRLWFKT 151
Query: 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKL----LLVDIDLLESKLHFSLRNL 183
+L L +E EY + +L L + + D D L L++I LE +++ + +N
Sbjct: 152 NTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 211
Query: 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED 243
K KA + +AI P G I G +H E +++ A++ FFEAF+ ++
Sbjct: 212 KKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 270
Query: 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFET 303
PR LKY++L +++ + S +A PE+ AM + A+ + FE
Sbjct: 271 PRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEK 328
Query: 304 ALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363
L+ + + +DP + H+ L + Q L +LI+PY+R+ I I++ + + + VE
Sbjct: 329 ILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESL 388
Query: 364 LSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398
L Q ILD G +DQ L + + A Y A
Sbjct: 389 LVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 423
>sp|Q6IR75|CSN2_XENLA COP9 signalosome complex subunit 2 (Fragment) OS=Xenopus laevis
GN=csn2 PE=2 SV=1
Length = 441
Score = 101 bits (251), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/340 (26%), Positives = 159/340 (46%), Gaps = 21/340 (6%)
Query: 69 LLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTF 124
LLT +R S + + + K + I+D ++ TS+ Q+ L +E + T + K
Sbjct: 93 LLTYIR---SAVTRNYSEKSINSILDYIS----TSK-QMDLLQEFYETTLDALKDAKNDR 144
Query: 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD--DKL----LLVDIDLLESKLHF 178
L + +L L +E EY + +L L + + D D L L++I LE +++
Sbjct: 145 LWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYT 204
Query: 179 SLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238
+ +N K KA + +AI P G I G +H E +++ A++ FFEAF+ +
Sbjct: 205 AQKNNKKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNY 263
Query: 239 NALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSL 298
+ PR LKY++L +++ + S +A PE+ AM + A+ +
Sbjct: 264 DESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDI 321
Query: 299 KLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPID 358
FE L+ + + +DP + H+ L + Q L +LI+PY+R+ I I++ + + +
Sbjct: 322 TEFEKILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVA 381
Query: 359 HVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398
VE L Q ILD G +DQ L + + A Y A
Sbjct: 382 DVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGARYTA 421
>sp|Q6IQT4|CSN2_DANRE COP9 signalosome complex subunit 2 OS=Danio rerio GN=cops2 PE=2
SV=1
Length = 443
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 94/395 (23%), Positives = 175/395 (44%), Gaps = 20/395 (5%)
Query: 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQL 73
++A + +P A+S +VL+ E L +++ + + ++ +
Sbjct: 39 SKALKEDDPKAALSSFQKVLELEGEKGE------WGFKALKQMIKINFKLTNFPEMMNRY 92
Query: 74 RPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTFLRQRV 129
+ + I A T I+++ TS+ Q+ L +E + T + K L +
Sbjct: 93 KQLLTYIRSAVTRNYSEKSINSILDYISTSK-QMDLLQEFYETTLEALKDAKNDRLWFKT 151
Query: 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKL----LLVDIDLLESKLHFSLRNL 183
+L L +E E+ + +L L + + D D L L++I LE +++ + +N
Sbjct: 152 NTKLGKLYLEREEFGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKNN 211
Query: 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED 243
K KA + +AI P G I G +H E +++ A++ FFEAF+ ++
Sbjct: 212 KKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGS 270
Query: 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFET 303
PR LKY++L +++ + S +A PE+ AM + A+ + FE
Sbjct: 271 PRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEK 328
Query: 304 ALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363
L+ + + +DP + H+ L + Q L +LI+PY+R+ I I++ + + + VE
Sbjct: 329 ILKTNHSNIMDDPFIREHIEELLRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESL 388
Query: 364 LSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398
L Q ILD G +DQ L + + A Y A
Sbjct: 389 LVQCILDNTINGRIDQVNQLLELDHQKRGGARYTA 423
>sp|Q94899|CSN2_DROME COP9 signalosome complex subunit 2 OS=Drosophila melanogaster
GN=alien PE=1 SV=2
Length = 444
Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 87/353 (24%), Positives = 154/353 (43%), Gaps = 18/353 (5%)
Query: 66 LCN---LLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----R 118
LCN ++ + + + I A T I+++ TS+ +AL + + T R
Sbjct: 83 LCNYDEMMVRYKQLLTYIKSAVTRNHSEKSINSILDYISTSK-NMALLQNFYETTLDALR 141
Query: 119 AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK------LLLVDIDLL 172
K L + +L L + ++T+ +L L + + D + L++I L
Sbjct: 142 DAKNDRLWFKTNTKLGKLYFDRSDFTKLQKILKQLHQSCQTDDGEDDLKKGTQLLEIYAL 201
Query: 173 ESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF 232
E +++ +N K KA + +AI P G I G +H E +++ A++ FF
Sbjct: 202 EIQMYTVQKNNKKLKALYEQSLHIKSAI-PHPLIMGVIRECGGKMHLREGEFEKAHTDFF 260
Query: 233 EAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADA 292
EAF+ ++ PR LKY++L +++ + S +A PE+ AM + ++
Sbjct: 261 EAFKNYDESGSPRRTTCLKYLVLANMLMKSG--INPFDSQEAKPYKNDPEILAMTNLVNS 318
Query: 293 HSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAEL 352
+ + FET LR ++ + D + H+ L + Q L +LI PY + I IA
Sbjct: 319 YQNNDINEFETILRQHRSNIMADQFIREHIEDLLRNIRTQVLIKLIRPYKNIAIPFIANA 378
Query: 353 IELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISN 405
+ + VE L ILD G +DQ V ++ + + A LE SN
Sbjct: 379 LNIEPAEVESLLVSCILDDTIKGRIDQ-VNQVLQLDKINSSASRYNALEKWSN 430
>sp|Q7SI58|CSN2_NEUCR COP9 signalosome complex subunit 2 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=csn-2 PE=1 SV=1
Length = 490
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 78/299 (26%), Positives = 139/299 (46%), Gaps = 16/299 (5%)
Query: 121 KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD------KLLLVDIDLLES 174
+R +L+ + +LA LL++ ++Y L L R+ D ++I LE
Sbjct: 148 ERLWLKTNI--KLARLLLDRKDYHAVARKLRELHNACRKSDGTDDPSKGTYSLEIYALEI 205
Query: 175 KLHFSLRNLPKAKAALTAARTAANAIYVP-PAQQGTIDLQSGILHAEEKDYKTAYSYFFE 233
+++ RN + K A +A VP P QG I G +H E+++K A S FFE
Sbjct: 206 QMYSETRNNNQLKVLYQKALKVRSA--VPHPKIQGVIRECGGKMHMSEENWKEAQSDFFE 263
Query: 234 AFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAH 293
AF ++ D R + LKY+LL +++ D+ S + P + AM + DA+
Sbjct: 264 AFRNYDEAGDLRRIQVLKYLLLTTMLMKS--DINPFDSQEMKPYRNDPRIFAMTELVDAY 321
Query: 294 SKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELI 353
+ + +E L+ L DP + ++ + + + + +LI PY+R+ I+ +AE +
Sbjct: 322 QRDDIYRYEDVLQK-NTDLLADPFIAENIDEVTRNMRTKGVVKLIAPYTRMRISWLAERL 380
Query: 354 ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATL--ETISNMGKVV 410
+ V LS +I+D + G +D+ G L + AD + T+ E + N+ V
Sbjct: 381 RITEPEVMDILSFLIVDGRVKGRIDEHKGVLELESREDADHVQAITVLSEAVGNLFNAV 439
>sp|Q5B3U7|CSN2_EMENI COP9 signalosome complex subunit 2 OS=Emericella nidulans (strain
FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139)
GN=csnB PE=1 SV=2
Length = 506
Score = 81.6 bits (200), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 28/333 (8%)
Query: 69 LLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKE--------MVQWTRAE 120
LLT ++ S + + + K + ++D + K G+ + + C E Q T E
Sbjct: 96 LLTYVK---SAVTRNYSEKSINNMLDYIEK--GSDDEKAYQCMEEFYSLTLNSFQNTNNE 150
Query: 121 KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK------LLLVDIDLLES 174
R +L+ + +LA L +E REY + + L + +R D L+++ LE
Sbjct: 151 -RLWLKTNI--KLARLWLERREYGQLSKKVRELHRACQREDGSDDPSKGTYLLELYALEI 207
Query: 175 KLHFSLRNLPKAKAALTAARTAANAIYVP-PAQQGTIDLQSGILHAEEKDYKTAYSYFFE 233
+++ +N + KA A +A VP P G I G +H E++++ A S FFE
Sbjct: 208 QMYAETKNNKRLKALYQRALRVRSA--VPHPKIMGIIRECGGKMHMSEENWEEAQSDFFE 265
Query: 234 AFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAH 293
+F ++ + + LKY++L +++ D+ S + P + AM + DA
Sbjct: 266 SFRNYDEAGSMQRIQVLKYLVLTTMLMKS--DINPFHSQETKPYKTDPRISAMTDLVDAF 323
Query: 294 SKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELI 353
+ + +E L L DP + ++ + + + + +LI PY+R ++ I++ I
Sbjct: 324 QRDDIHAYEEVLSKNPDVLA-DPFIAENIDEVSRNMRTKAILKLIAPYTRFTLSFISKHI 382
Query: 354 ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386
++ + + LS +ILDKK +DQ G +++
Sbjct: 383 KISVTEAQDILSFLILDKKLNAKIDQESGTVVV 415
>sp|Q8W207|CSN2_ARATH COP9 signalosome complex subunit 2 OS=Arabidopsis thaliana GN=CSN2
PE=1 SV=1
Length = 439
Score = 80.9 bits (198), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 167/371 (45%), Gaps = 20/371 (5%)
Query: 20 SNPSDAISMLYRVLD-DPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78
+ P +A+S V+ +P + + + + L + + + +LT ++ S
Sbjct: 39 TEPEEALSGFAEVVQMEPEKADWGFKALKQTVKIYYRLGKYKEMMEAYTEMLTYIK---S 95
Query: 79 LIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT----RAEKRTFLRQRVEARLA 134
+ + + K + I+D V+ G++ L +E Q T K L + +L
Sbjct: 96 AVTRNYSEKCINNIMDFVS---GSASQNTGLLQEFYQTTLKALEEAKNERLWFKTNLKLC 152
Query: 135 ALLMESREYTEALTLLTSLVKEVRR---LDDKL---LLVDIDLLESKLHFSLRNLPKAKA 188
+ + EY +L L K ++ DD+ L+++ +E +++ ++ K K
Sbjct: 153 NIWFDIGEYRRMTKILKELHKSCQKEDGTDDQKKGSQLLEVYAIEIQIYTETKDNKKLKQ 212
Query: 189 ALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVF 248
A +AI P G I G +H E+ ++ A + FFEAF+ ++ + R +
Sbjct: 213 LYHKALAIKSAI-PHPRIMGIIRECGGKMHMAERQWEEAATDFFEAFKNYDEAGNQRRIQ 271
Query: 249 SLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDF 308
LKY++L +++ +V +A PE+ AM + A+ + + FE L+
Sbjct: 272 CLKYLVLANMLMES--EVNPFDGQEAKPYKNDPEILAMTNLIAAYQRNEIIEFERILKSN 329
Query: 309 KAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368
+ + +DP + ++ L + Q L +LI+PY+++ I I++ + +P V + L +I
Sbjct: 330 RRTIMDDPFIRNYMEDLLKKVRTQVLLKLIKPYTKIGIPFISKELNVPETDVTELLVSLI 389
Query: 369 LDKKFAGTLDQ 379
LD + G +D+
Sbjct: 390 LDSRIDGHIDE 400
>sp|O01422|CSN2_CAEEL COP9 signalosome complex subunit 2 OS=Caenorhabditis elegans
GN=csn-2 PE=1 SV=2
Length = 495
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 86/375 (22%), Positives = 163/375 (43%), Gaps = 29/375 (7%)
Query: 49 AITELSDLLRQENRAQDLCNLLTQLRPFF-SLIPKAKTAKIVRGIIDAVAKIPGTSELQI 107
A+ ++ + +NR + + QL + S + K + K + I+D ++ + Q+
Sbjct: 68 ALKQMIKITFGQNRLEKMLEYYRQLLTYIKSAVTKNYSEKSINAILDYIS-----TSRQM 122
Query: 108 ALCKEMVQWT----RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSL---VKEVRRL 160
L + + T + K L + +L L + E+T+ ++ L K +
Sbjct: 123 DLLQHFYETTLDALKDAKNERLWFKTNTKLGKLFFDLHEFTKLEKIVKQLKVSCKNEQGE 182
Query: 161 DDK---LLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY----VP-PAQQGTIDL 212
+D+ L++I LE +++ +N KA A AI+ +P P GTI
Sbjct: 183 EDQRKGTQLLEIYALEIQMYTEQKN---NKALKWVYELATQAIHTKSAIPHPLILGTIRE 239
Query: 213 QSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISS 272
G +H + + A++ FFEAF+ ++ PR LKY++L +++ D+ S
Sbjct: 240 CGGKMHLRDGRFLDAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLIK--SDINPFDSQ 297
Query: 273 KAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQ 332
+A PE+ AM + A+ ++ FE + + + DP + H L + + Q
Sbjct: 298 EAKPFKNEPEIVAMTQMVQAYQDNDIQAFEQIMAAHQDSIMADPFIREHTEELMNNIRTQ 357
Query: 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKA 392
L RLI PY+ V I+++++ +++ V L ILD +++ G + E PK
Sbjct: 358 VLLRLIRPYTNVRISYLSQKLKVSQKEVIHLLVDAILDDGLEAKINEESG---MIEMPKN 414
Query: 393 DAIYPATLETISNMG 407
T + N G
Sbjct: 415 KKKMMVTSLVVPNAG 429
>sp|Q9HFR0|CSN2_SCHPO COP9 signalosome complex subunit 2 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=csn2 PE=1 SV=1
Length = 437
Score = 63.2 bits (152), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 103/205 (50%), Gaps = 4/205 (1%)
Query: 204 PAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQA 263
P G I G +H +E + A + FFE+F++++ + LKY++L M+S++
Sbjct: 233 PRIMGIIRECGGKMHMQENQWSEAQTNFFESFKSYDEAGSSDRIRVLKYLVLAN-MLSES 291
Query: 264 DDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLS 323
+ + S + P + AM + +A+ R + E L+ ++ + +D + +++
Sbjct: 292 E-INPFDSPETQPYKDNPHIIAMTKLVEAYQIRDITAVERILQTYQHDILDDDFIRQYVD 350
Query: 324 SLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383
+ ++ Q L L++PY+ V+++ +A+ + + I +E+ L +I+D++ G +D V
Sbjct: 351 KILYSIRSQVLIELVKPYTSVKLSLLAKKLGVSISIIEQALVGLIIDERVNGKIDM-VNE 409
Query: 384 LIIFEDPKADAIYPATLETISNMGK 408
+ PK + I+ +E + +
Sbjct: 410 VFTISQPK-NTIHNQLVEDVQKLWN 433
>sp|P45432|CSN1_ARATH COP9 signalosome complex subunit 1 OS=Arabidopsis thaliana GN=CSN1
PE=1 SV=2
Length = 441
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/361 (19%), Positives = 143/361 (39%), Gaps = 20/361 (5%)
Query: 73 LRPFFSLIPKAKTAKIVRGIIDAVAKIPGTS-ELQIALCKEMVQWTRAEKRTFLRQRVEA 131
LR + I K + ++ R +++ + G + +A C E V +K+ L + +
Sbjct: 70 LRMAYDEIKKGENTQLFREVVNKIGNRLGEKYGMDLAWC-EAVDRRAEQKKVKLENELSS 128
Query: 132 RLAALLMES--------REYTEALTLLTSLVKEVRRLDDKLLLVD--IDLLESKLHFSLR 181
L+ ES ++ A +L K R D I + + + S+
Sbjct: 129 YRTNLIKESIRMGYNDFGDFYYACGMLGDAFKNYIRTRDYCTTTKHIIHMCMNAILVSIE 188
Query: 182 NLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF----EAFEA 237
+ N + P + SG+ H E K YK A F E +
Sbjct: 189 MGQFTHVTSYVNKAEQNPETLEPMVNAKLRCASGLAHLELKKYKLAARKFLDVNPELGNS 248
Query: 238 FNALEDPRAVFSLKYMLLCKIM-VSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKR 296
+N + P+ + + Y LC + +++ +I + ++ D + + D +S R
Sbjct: 249 YNEVIAPQDIAT--YGGLCALASFDRSELKQKVIDNINFRNFLELVPDVRELINDFYSSR 306
Query: 297 SLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP 356
E L K+ L D +H H+ +LYD + ++ L + P+ V+++ +A+ +
Sbjct: 307 YASCLEY-LASLKSNLLLDIHLHDHVDTLYDQIRKKALIQYTLPFVSVDLSRMADAFKTS 365
Query: 357 IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVR 416
+ +EK+L +I D + +D L + +A + L+ + + V ++ +R
Sbjct: 366 VSGLEKELEALITDNQIQARIDSHNKILYARHADQRNATFQKVLQMGNEFDRDVRAMLLR 425
Query: 417 S 417
+
Sbjct: 426 A 426
>sp|Q9GS00|CSN1_CAEEL COP9 signalosome complex subunit 1 OS=Caenorhabditis elegans
GN=csn-1 PE=1 SV=1
Length = 601
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 294 SKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELI 353
S R + FE +R K +L DP + R++ L++ + ++ + + ++PYS +++A +AE +
Sbjct: 404 SSRFGRCFEI-MRSVKPRLLLDPFISRNVDELFEKIRQKCVLQYLQPYSTIKMATMAEAV 462
Query: 354 ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI 395
+ ++ L ++I K + +DQ G + I ++ +AI
Sbjct: 463 GMSSAELQLSLLELIEQKHVSLKIDQNEGIVRILDERDENAI 504
>sp|O00232|PSD12_HUMAN 26S proteasome non-ATPase regulatory subunit 12 OS=Homo sapiens
GN=PSMD12 PE=1 SV=3
Length = 456
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379
+ L + ++E N+ + + Y+R+ + +A+L++L +D E LS ++++K +D+
Sbjct: 349 KRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDR 408
Query: 380 GVGCLIIFEDPK 391
G +I F+ PK
Sbjct: 409 LAG-IINFQRPK 419
>sp|Q8W575|CSN3_ARATH COP9 signalosome complex subunit 3 OS=Arabidopsis thaliana GN=CSN3
PE=1 SV=2
Length = 429
Score = 37.7 bits (86), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 24/175 (13%)
Query: 251 KYMLLCKIMVSQADDV----AGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALR 306
KY+L+ I Q + A + ++ Y GP ++ + + ++ + E +
Sbjct: 225 KYILVSLIHNGQFTNTLPKCASTAAQRSFKNYTGPYIE----LGNCYNDGKIGELEALVV 280
Query: 307 DFKAQLEED---PIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEK 362
A+ EED +V + +SSLY ++N+ RL + Y + + IA +++L E
Sbjct: 281 ARNAEFEEDKNLGLVKQAVSSLY----KRNILRLTQKYLTLSLQDIANMVQLGNAKEAEM 336
Query: 363 KLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRS 417
+ QMI D + ++Q G + EDP+ Y + S M +++DS+ R+
Sbjct: 337 HVLQMIQDGQIHALINQKDGMVRFLEDPEQ---YKS-----SEMIEIMDSVIQRT 383
>sp|Q5RBI3|PSD12_PONAB 26S proteasome non-ATPase regulatory subunit 12 OS=Pongo abelii
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 37.7 bits (86), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379
+ L + ++E N+ + + Y+R+ + +A+L++L +D E LS ++++K +D+
Sbjct: 349 KRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDR 408
Query: 380 GVGCLIIFEDPK 391
G +I F+ PK
Sbjct: 409 LAG-IINFQRPK 419
>sp|Q2KJ25|PSD12_BOVIN 26S proteasome non-ATPase regulatory subunit 12 OS=Bos taurus
GN=PSMD12 PE=2 SV=3
Length = 456
Score = 37.7 bits (86), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379
+ L + ++E N+ + + Y+R+ + +A+L++L +D E LS ++++K +D+
Sbjct: 349 KRWKDLKNRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDR 408
Query: 380 GVGCLIIFEDPK 391
G +I F+ PK
Sbjct: 409 LAG-IINFQRPK 419
>sp|Q9N359|CSN4_CAEEL COP9 signalosome complex subunit 4 OS=Caenorhabditis elegans
GN=csn-4 PE=1 SV=1
Length = 412
Score = 37.4 bits (85), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 56/117 (47%), Gaps = 3/117 (2%)
Query: 305 LRDFKAQLEEDPIVHRHLSSLYDTLL-EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363
L +F+ QL++ H S+ ++ E N+ + + Y + + +L+ + + E
Sbjct: 291 LEEFEHQLQDHQKADEHGESILKGVIQEHNITAISQLYINISFKTLGQLLGVDTEAAESM 350
Query: 364 LSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPAT-LETISNMGKVVDSLFVRSAK 419
+MI ++ G +DQ G ++ FED ++ + L T+ + KV D + R ++
Sbjct: 351 AGEMISSERLHGYIDQTNG-ILHFEDSNPMRVWDSQILSTLEQINKVSDMIVARHSE 406
>sp|Q9D8W5|PSD12_MOUSE 26S proteasome non-ATPase regulatory subunit 12 OS=Mus musculus
GN=Psmd12 PE=1 SV=4
Length = 456
Score = 36.6 bits (83), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379
+ L ++E N+ + + Y+R+ + +A+L++L +D E LS ++++K +D+
Sbjct: 349 KRWKDLKSRVVEHNIRIMAKYYTRITMKRMAQLLDLSVDESEAFLSNLVVNKTIFAKVDR 408
Query: 380 GVGCLIIFEDPK 391
G +I F+ PK
Sbjct: 409 LAG-VINFQRPK 419
>sp|Q9V345|CSN4_DROME COP9 signalosome complex subunit 4 OS=Drosophila melanogaster
GN=CSN4 PE=1 SV=1
Length = 407
Score = 36.2 bits (82), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 46/193 (23%), Positives = 85/193 (44%), Gaps = 25/193 (12%)
Query: 216 ILHAEEKDYKTAYSYFFEAFEAFNALEDPRAV------FSLKYMLLCKIMVSQADDVAGI 269
+ +A DY+ F EA + +N L + V +LK L+C ++ S + +
Sbjct: 196 VCYARVLDYRRK---FIEAAQRYNELSYRKIVDQGERMTALKKALICTVLASAGQQRSRM 252
Query: 270 ISS---KAGLQYVGPELDAMKAVADAHSKRS-LKLFETALRDFKAQLEEDPIVHRHLSSL 325
+++ Q++ K + +RS L+ FE L+D + D SS+
Sbjct: 253 LATLFKDERCQHLPAYGILEKMYLERIIRRSELQEFEALLQDHQKAATSDG------SSI 306
Query: 326 YD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384
D + E NL + Y+ + + L+++P EK SQMI + + G +DQ + +
Sbjct: 307 LDRAVFEHNLLSASKLYNNITFEELGALLDIPAVKAEKIASQMITEGRMNGHIDQ-ISAI 365
Query: 385 IIFED----PKAD 393
+ FE+ P+ D
Sbjct: 366 VHFENRELLPQWD 378
>sp|Q68FS2|CSN4_RAT COP9 signalosome complex subunit 4 OS=Rattus norvegicus GN=Cops4
PE=2 SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|Q5R648|CSN4_PONAB COP9 signalosome complex subunit 4 OS=Pongo abelii GN=COPS4 PE=2
SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKA 392
++ FE +A
Sbjct: 356 DGIVHFETREA 366
>sp|Q3SZA0|CSN4_BOVIN COP9 signalosome complex subunit 4 OS=Bos taurus GN=COPS4 PE=2 SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|A7Y521|CSN4_PIG COP9 signalosome complex subunit 4 OS=Sus scrofa GN=COPS4 PE=2 SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|O88544|CSN4_MOUSE COP9 signalosome complex subunit 4 OS=Mus musculus GN=Cops4 PE=1
SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|Q4R5E6|CSN4_MACFA COP9 signalosome complex subunit 4 OS=Macaca fascicularis GN=COPS4
PE=2 SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|Q9BT78|CSN4_HUMAN COP9 signalosome complex subunit 4 OS=Homo sapiens GN=COPS4 PE=1
SV=1
Length = 406
Score = 35.4 bits (80), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 2/82 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ +
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQ-I 355
Query: 382 GCLIIFEDPKADAIYPATLETI 403
++ FE +A + ++++
Sbjct: 356 DGIVHFETREALPTWDKQIQSL 377
>sp|Q93Y35|PSMD6_ARATH Probable 26S proteasome non-ATPase regulatory subunit 6
OS=Arabidopsis thaliana GN=At4g24820 PE=2 SV=1
Length = 387
Score = 34.7 bits (78), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 39/214 (18%), Positives = 87/214 (40%), Gaps = 9/214 (4%)
Query: 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALE-DPRAVFSLKYMLLCKIMVSQAD 264
++ + + G+ +++K A S F ++ F E P F +L I + +
Sbjct: 174 RKNRLKVYEGLYCMSTRNFKKAASLFLDSISTFTTYEIFPYETFIFYTVLTSIITLDRVS 233
Query: 265 DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSS 324
++ + L +G ++ + ++ + K F +A Q++ D ++ H
Sbjct: 234 LKQKVVDAPEILTVLG-KIPFLSEFLNSLYECQYKAFFSAFAGMAVQIKYDRYLYPHFRF 292
Query: 325 LYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384
+ + +E Y V + +A+ + +D ++++LS+ I K +D+ G L
Sbjct: 293 YMREVRTVVYSQFLESYKSVTVEAMAKAFGVSVDFIDQELSRFIAAGKLHCKIDKVAGVL 352
Query: 385 IIFEDPKADAIYPAT-------LETISNMGKVVD 411
+A+Y AT L I + +V+D
Sbjct: 353 ETNRPDAKNALYQATIKQGDFLLNRIQKLSRVID 386
>sp|Q54UJ0|PSD12_DICDI 26S proteasome non-ATPase regulatory subunit 12 OS=Dictyostelium
discoideum GN=psmD12 PE=2 SV=1
Length = 447
Score = 33.9 bits (76), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
Query: 329 LLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ--GVGCLII 386
++E N+ + Y ++ A +AEL++L +D EK +S ++ +K +D+ G+
Sbjct: 349 VIEHNIRVISTYYQKISTARLAELLDLSLDESEKFVSDLVSNKTIFAKIDRPAGIATFTT 408
Query: 387 FEDP 390
DP
Sbjct: 409 TNDP 412
>sp|Q6P0H6|CSN4_DANRE COP9 signalosome complex subunit 4 OS=Danio rerio GN=cops4 PE=2
SV=1
Length = 406
Score = 33.9 bits (76), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 323 SSLYD-TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381
SS+ D ++E NL + Y+ + + L+E+P EK SQMI + + G +DQ
Sbjct: 297 SSILDRAVIEHNLLSASKLYNNITFEELGALLEIPPAKAEKIASQMITEGRMNGFIDQID 356
Query: 382 GCLIIFE 388
G ++ FE
Sbjct: 357 G-IVHFE 362
>sp|B4MRZ8|EIF3C_DROWI Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
willistoni GN=eIF3-S8 PE=3 SV=1
Length = 919
Score = 33.9 bits (76), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/76 (23%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF--EDPKADAIYPA 398
Y+ + I +AE+ ELP+ V +S+MI++++ +LD +++ E + A+
Sbjct: 766 YTSISIPSLAEMYELPVQKVHSIISKMIINEELMASLDDPSETVVMHRSEPSRLQALAMQ 825
Query: 399 TLETISNMGKVVDSLF 414
++ ++N+ V + +F
Sbjct: 826 FVDKVTNLVDVNEKVF 841
>sp|O02328|EIF3C_CAEEL Eukaryotic translation initiation factor 3 subunit C
OS=Caenorhabditis elegans GN=eif-3.C PE=3 SV=2
Length = 898
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386
Y+ V + +A+L EL V +S+MI+ ++ + TLD+ CLI+
Sbjct: 756 YATVSLKKLADLFELSKKDVHSIISKMIIQEELSATLDEPTDCLIM 801
>sp|B3MIF1|EIF3C_DROAN Eukaryotic translation initiation factor 3 subunit C OS=Drosophila
ananassae GN=eIF3-S8 PE=3 SV=1
Length = 906
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF--EDPKADAIYPA 398
Y+ + I +A++ ELP+ V +S+MI++++ +LD +++ E + A+
Sbjct: 767 YTSISIPSLAQMYELPVQKVHSIISKMIINEELMASLDDPTETVVMHRSEPSRLQALAMQ 826
Query: 399 TLETISNMGKVVDSLF 414
++ ++N+ V + +F
Sbjct: 827 FVDKVTNLVDVNEKVF 842
>sp|B4MLR8|UBP36_DROWI Ubiquitin carboxyl-terminal hydrolase 36 OS=Drosophila willistoni
GN=Usp36 PE=3 SV=1
Length = 1311
Score = 33.5 bits (75), Expect = 3.4, Method: Composition-based stats.
Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 109 LCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD 161
+CK MV + + FLR VEA A LM R Y E L LVKE L+
Sbjct: 302 ICKHMVIGRQEDAHEFLRFLVEAMEKAYLMRYRNYKE----LDQLVKETTPLN 350
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.362
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 133,293,601
Number of Sequences: 539616
Number of extensions: 5010823
Number of successful extensions: 15887
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 47
Number of HSP's that attempted gapping in prelim test: 15791
Number of HSP's gapped (non-prelim): 108
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)