Query 014555
Match_columns 422
No_of_seqs 218 out of 892
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 06:17:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014555.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014555hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1463 26S proteasome regulat 100.0 3.8E-82 8.2E-87 593.4 35.0 401 9-409 6-411 (411)
2 COG5159 RPN6 26S proteasome re 100.0 3.5E-73 7.5E-78 522.6 35.7 410 11-420 7-420 (421)
3 KOG1464 COP9 signalosome, subu 100.0 8.1E-69 1.8E-73 491.5 31.6 390 13-416 34-438 (440)
4 KOG1498 26S proteasome regulat 100.0 5.1E-54 1.1E-58 410.7 29.6 399 8-419 14-425 (439)
5 COG5071 RPN5 26S proteasome re 100.0 1.2E-43 2.6E-48 328.8 25.9 391 12-414 18-421 (439)
6 KOG0687 26S proteasome regulat 100.0 5.6E-33 1.2E-37 260.5 27.3 292 104-401 81-375 (393)
7 COG5187 RPN7 26S proteasome re 100.0 1.2E-27 2.6E-32 221.6 29.8 298 104-406 92-394 (412)
8 KOG2908 26S proteasome regulat 100.0 8.2E-27 1.8E-31 220.4 32.3 312 93-420 43-378 (380)
9 KOG1497 COP9 signalosome, subu 100.0 1.9E-26 4.1E-31 215.9 28.0 319 83-419 59-393 (399)
10 KOG0686 COP9 signalosome, subu 99.9 6.2E-26 1.3E-30 218.9 24.6 293 122-421 146-443 (466)
11 PF01399 PCI: PCI domain; Int 99.8 3.4E-19 7.3E-24 146.4 12.5 105 284-388 1-105 (105)
12 KOG2581 26S proteasome regulat 99.8 1.3E-17 2.8E-22 161.3 24.5 203 174-388 216-423 (493)
13 KOG2582 COP9 signalosome, subu 99.6 1.4E-12 3.1E-17 125.1 26.0 216 165-390 138-362 (422)
14 smart00088 PINT motif in prote 99.5 3.3E-14 7.2E-19 113.3 9.1 73 320-392 1-73 (88)
15 smart00753 PAM PCI/PINT associ 99.5 3.3E-14 7.2E-19 113.3 9.1 73 320-392 1-73 (88)
16 PF10602 RPN7: 26S proteasome 99.5 9.4E-13 2E-17 118.7 15.0 142 121-267 31-175 (177)
17 KOG1076 Translation initiation 99.2 6.4E-08 1.4E-12 100.0 29.8 259 149-412 468-786 (843)
18 KOG2758 Translation initiation 99.1 2.5E-07 5.4E-12 88.1 27.4 153 248-406 253-410 (432)
19 KOG2753 Uncharacterized conser 99.1 2.1E-07 4.5E-12 88.9 26.5 313 49-410 47-369 (378)
20 COG5600 Transcription-associat 98.6 3.1E-05 6.7E-10 75.6 24.0 211 173-391 183-406 (413)
21 KOG2688 Transcription-associat 98.5 1.1E-05 2.5E-10 80.1 17.9 209 172-391 168-387 (394)
22 PF14938 SNAP: Soluble NSF att 98.2 0.00061 1.3E-08 66.1 23.9 241 47-326 35-278 (282)
23 KOG2072 Translation initiation 97.8 0.082 1.8E-06 56.8 33.9 76 312-387 416-492 (988)
24 PRK11788 tetratricopeptide rep 97.7 0.0097 2.1E-07 59.7 23.1 60 13-75 75-135 (389)
25 PF10075 PCI_Csn8: COP9 signal 97.7 0.00016 3.5E-09 62.8 8.3 84 280-367 38-121 (143)
26 PRK11788 tetratricopeptide rep 97.7 0.078 1.7E-06 53.1 29.8 196 18-236 47-242 (389)
27 COG2956 Predicted N-acetylgluc 97.5 0.014 3E-07 56.7 19.4 194 16-232 45-238 (389)
28 PF03399 SAC3_GANP: SAC3/GANP/ 97.1 0.0044 9.6E-08 56.8 10.6 108 243-355 95-204 (204)
29 PF14938 SNAP: Soluble NSF att 97.1 0.086 1.9E-06 51.1 20.0 181 13-196 41-225 (282)
30 PF04190 DUF410: Protein of un 97.1 0.095 2.1E-06 50.3 19.7 223 49-326 12-235 (260)
31 KOG1861 Leucine permease trans 97.1 0.0092 2E-07 60.2 12.8 145 205-356 345-491 (540)
32 PF09976 TPR_21: Tetratricopep 97.0 0.0088 1.9E-07 51.8 11.2 94 130-234 51-144 (145)
33 TIGR02917 PEP_TPR_lipo putativ 97.0 0.61 1.3E-05 51.2 27.8 47 21-74 480-526 (899)
34 TIGR03302 OM_YfiO outer membra 97.0 0.13 2.9E-06 47.8 19.3 176 10-193 36-229 (235)
35 PRK10866 outer membrane biogen 96.9 0.11 2.5E-06 49.2 18.8 174 10-190 35-235 (243)
36 PRK10747 putative protoheme IX 96.9 0.097 2.1E-06 53.3 19.5 187 19-236 166-356 (398)
37 TIGR00540 hemY_coli hemY prote 96.8 0.074 1.6E-06 54.3 17.6 202 14-236 160-365 (409)
38 TIGR00990 3a0801s09 mitochondr 96.8 0.15 3.3E-06 54.9 20.6 193 19-237 344-537 (615)
39 PF10255 Paf67: RNA polymerase 96.8 0.05 1.1E-06 55.1 15.4 180 173-365 128-343 (404)
40 TIGR00990 3a0801s09 mitochondr 96.7 0.22 4.8E-06 53.6 21.1 188 21-237 309-496 (615)
41 TIGR02917 PEP_TPR_lipo putativ 96.7 1.4 3E-05 48.5 28.4 58 13-77 573-631 (899)
42 COG2956 Predicted N-acetylgluc 96.6 0.23 5.1E-06 48.4 18.0 167 12-199 112-281 (389)
43 TIGR02521 type_IV_pilW type IV 96.6 0.51 1.1E-05 42.4 21.0 181 20-230 45-225 (234)
44 TIGR02521 type_IV_pilW type IV 96.6 0.33 7.1E-06 43.7 18.5 171 44-237 28-198 (234)
45 PF09976 TPR_21: Tetratricopep 96.5 0.27 5.9E-06 42.3 16.7 122 59-193 23-144 (145)
46 KOG2003 TPR repeat-containing 96.4 0.73 1.6E-05 46.8 20.8 149 137-306 534-684 (840)
47 KOG1840 Kinesin light chain [C 96.4 0.44 9.6E-06 49.9 20.0 206 21-230 256-472 (508)
48 PRK11447 cellulose synthase su 96.3 0.43 9.3E-06 55.5 21.7 196 19-234 474-697 (1157)
49 PF13525 YfiO: Outer membrane 96.2 0.52 1.1E-05 43.2 17.6 167 10-186 8-197 (203)
50 TIGR02795 tol_pal_ybgF tol-pal 96.1 0.19 4.1E-06 40.7 12.6 110 131-249 6-115 (119)
51 PF09756 DDRGK: DDRGK domain; 96.0 0.012 2.6E-07 53.3 5.4 74 331-409 101-174 (188)
52 KOG2003 TPR repeat-containing 95.7 0.35 7.5E-06 49.0 14.6 206 18-260 502-708 (840)
53 KOG1126 DNA-binding cell divis 95.7 2.2 4.7E-05 45.3 21.0 183 21-236 334-517 (638)
54 cd00189 TPR Tetratricopeptide 95.7 0.14 3.1E-06 38.2 9.7 93 131-236 4-96 (100)
55 PRK10049 pgaA outer membrane p 95.7 2 4.2E-05 47.8 22.1 195 20-240 251-459 (765)
56 KOG2002 TPR-containing nuclear 95.6 1.4 3E-05 48.7 19.5 101 130-239 273-373 (1018)
57 PRK11447 cellulose synthase su 95.4 1.7 3.7E-05 50.5 21.5 196 19-236 282-523 (1157)
58 KOG3250 COP9 signalosome, subu 95.4 0.086 1.9E-06 48.1 8.2 127 280-416 56-190 (258)
59 PF13429 TPR_15: Tetratricopep 95.4 0.49 1.1E-05 45.4 14.3 61 8-75 9-72 (280)
60 PF12569 NARP1: NMDA receptor- 95.3 3 6.4E-05 44.1 20.7 64 123-196 194-257 (517)
61 COG4105 ComL DNA uptake lipopr 95.2 2.9 6.3E-05 39.6 18.5 173 9-189 36-226 (254)
62 PF09012 FeoC: FeoC like trans 95.1 0.039 8.4E-07 41.5 4.6 50 332-381 3-52 (69)
63 PF13424 TPR_12: Tetratricopep 95.1 0.23 5E-06 37.6 9.0 68 130-197 8-76 (78)
64 PRK10049 pgaA outer membrane p 95.0 3.3 7.2E-05 45.9 21.5 202 23-238 213-423 (765)
65 CHL00033 ycf3 photosystem I as 94.9 0.33 7.2E-06 42.8 10.9 107 131-240 39-145 (168)
66 KOG1840 Kinesin light chain [C 94.9 6 0.00013 41.6 22.1 192 48-241 200-400 (508)
67 COG3063 PilF Tfp pilus assembl 94.8 0.53 1.2E-05 43.9 11.7 120 126-263 36-155 (250)
68 PRK15174 Vi polysaccharide exp 94.5 8.8 0.00019 41.9 22.6 96 130-238 287-382 (656)
69 PRK02603 photosystem I assembl 94.5 0.73 1.6E-05 40.9 12.0 106 131-239 39-144 (172)
70 PF13429 TPR_15: Tetratricopep 94.3 0.86 1.9E-05 43.7 12.9 182 21-236 59-242 (280)
71 PF13432 TPR_16: Tetratricopep 94.2 0.46 9.9E-06 34.5 8.4 59 132-196 2-60 (65)
72 PF13424 TPR_12: Tetratricopep 94.2 0.38 8.2E-06 36.4 8.2 73 166-238 4-76 (78)
73 KOG1586 Protein required for f 94.1 5.3 0.00011 37.5 16.6 46 281-326 232-277 (288)
74 PF12895 Apc3: Anaphase-promot 94.0 0.47 1E-05 36.6 8.5 74 107-193 9-84 (84)
75 COG3071 HemY Uncharacterized e 93.9 8 0.00017 38.9 18.5 193 10-235 156-355 (400)
76 KOG3081 Vesicle coat complex C 93.6 4.2 9.1E-05 38.9 15.3 67 215-289 214-281 (299)
77 TIGR02552 LcrH_SycD type III s 93.6 0.84 1.8E-05 38.2 10.2 96 130-238 20-115 (135)
78 PLN03218 maturation of RBCL 1; 93.5 18 0.00039 41.8 24.8 24 51-74 511-534 (1060)
79 TIGR03302 OM_YfiO outer membra 93.0 7.3 0.00016 35.9 19.9 184 45-238 31-233 (235)
80 PF12895 Apc3: Anaphase-promot 93.0 0.86 1.9E-05 35.1 8.5 84 139-234 1-84 (84)
81 KOG2076 RNA polymerase III tra 92.8 19 0.0004 39.9 27.2 330 9-368 141-510 (895)
82 PLN03218 maturation of RBCL 1; 92.3 26 0.00057 40.4 29.4 187 21-234 522-710 (1060)
83 PRK15359 type III secretion sy 92.2 1.5 3.3E-05 37.8 9.9 92 132-236 29-120 (144)
84 PF12569 NARP1: NMDA receptor- 92.1 18 0.0004 38.2 26.4 201 14-234 11-254 (517)
85 KOG1155 Anaphase-promoting com 91.9 7.3 0.00016 40.0 15.3 152 21-193 379-533 (559)
86 PRK10370 formate-dependent nit 91.8 9.9 0.00021 34.7 18.6 95 132-239 78-175 (198)
87 PF13525 YfiO: Outer membrane 91.8 10 0.00022 34.7 20.6 169 45-259 3-190 (203)
88 PRK04841 transcriptional regul 91.6 27 0.0006 39.2 24.1 214 20-236 423-640 (903)
89 KOG2076 RNA polymerase III tra 91.5 11 0.00023 41.7 17.1 172 21-199 256-481 (895)
90 PRK09782 bacteriophage N4 rece 91.4 29 0.00063 39.8 21.4 91 132-235 614-704 (987)
91 PF08784 RPA_C: Replication pr 91.4 0.19 4.1E-06 40.8 3.1 38 342-379 64-101 (102)
92 PLN03081 pentatricopeptide (PP 91.2 12 0.00026 40.9 17.9 88 132-234 467-554 (697)
93 PLN03088 SGT1, suppressor of 91.0 2.5 5.3E-05 42.4 11.3 92 132-236 7-98 (356)
94 PRK12370 invasion protein regu 90.6 20 0.00043 38.2 18.4 92 131-234 376-467 (553)
95 PF14559 TPR_19: Tetratricopep 90.4 0.99 2.1E-05 32.9 6.0 54 18-78 3-56 (68)
96 KOG3054 Uncharacterized conser 90.4 0.61 1.3E-05 43.4 5.6 57 333-389 204-260 (299)
97 PF04733 Coatomer_E: Coatomer 90.2 2.6 5.7E-05 41.0 10.4 203 17-265 12-219 (290)
98 PF13414 TPR_11: TPR repeat; P 90.1 1.9 4E-05 31.5 7.3 59 132-196 8-67 (69)
99 COG3355 Predicted transcriptio 89.7 3.9 8.4E-05 34.6 9.5 81 335-415 34-120 (126)
100 PF14559 TPR_19: Tetratricopep 89.6 1.3 2.7E-05 32.3 6.0 53 137-195 1-53 (68)
101 PLN03081 pentatricopeptide (PP 89.4 13 0.00028 40.7 16.3 190 19-233 272-487 (697)
102 PRK10803 tol-pal system protei 89.2 9.1 0.0002 36.7 13.1 97 137-240 153-249 (263)
103 PRK15431 ferrous iron transpor 88.9 0.83 1.8E-05 35.1 4.5 52 333-384 6-57 (78)
104 PF13414 TPR_11: TPR repeat; P 88.7 3.3 7.3E-05 30.1 7.8 62 168-236 4-66 (69)
105 PF13412 HTH_24: Winged helix- 88.6 1.1 2.3E-05 30.8 4.6 44 331-374 5-48 (48)
106 PF03704 BTAD: Bacterial trans 88.5 14 0.00031 31.3 13.1 78 123-208 60-140 (146)
107 smart00550 Zalpha Z-DNA-bindin 88.5 0.98 2.1E-05 33.8 4.7 45 331-375 8-54 (68)
108 PF10345 Cohesin_load: Cohesin 88.4 36 0.00077 36.8 18.5 117 127-245 59-176 (608)
109 PF08220 HTH_DeoR: DeoR-like h 87.9 1.5 3.3E-05 31.5 5.2 52 331-386 2-53 (57)
110 PRK10747 putative protoheme IX 87.8 34 0.00073 34.7 19.6 186 20-236 201-389 (398)
111 PRK10370 formate-dependent nit 87.1 18 0.0004 32.9 13.2 125 21-163 54-180 (198)
112 PRK09782 bacteriophage N4 rece 86.7 55 0.0012 37.6 19.3 91 130-233 646-736 (987)
113 PRK11189 lipoprotein NlpI; Pro 86.4 33 0.00072 33.2 20.0 150 21-192 41-190 (296)
114 KOG2300 Uncharacterized conser 86.4 45 0.00097 34.7 18.2 129 130-263 49-181 (629)
115 PF09295 ChAPs: ChAPs (Chs5p-A 86.3 9.2 0.0002 38.9 11.7 93 130-236 203-295 (395)
116 TIGR00373 conserved hypothetic 86.2 12 0.00026 33.0 11.0 64 340-403 25-90 (158)
117 PRK06266 transcription initiat 86.1 9.2 0.0002 34.4 10.4 93 312-405 4-100 (178)
118 PRK14574 hmsH outer membrane p 86.0 65 0.0014 36.2 22.3 201 22-234 267-476 (822)
119 PF13432 TPR_16: Tetratricopep 85.9 3.8 8.3E-05 29.5 6.6 60 172-238 2-61 (65)
120 PF10345 Cohesin_load: Cohesin 85.7 57 0.0012 35.2 24.0 197 23-229 38-246 (608)
121 PRK15174 Vi polysaccharide exp 85.5 60 0.0013 35.4 26.4 192 13-236 48-240 (656)
122 KOG1156 N-terminal acetyltrans 85.3 58 0.0013 35.0 18.9 221 11-258 189-454 (700)
123 cd05804 StaR_like StaR_like; a 85.2 39 0.00085 33.0 19.0 70 131-200 268-340 (355)
124 PRK14574 hmsH outer membrane p 85.1 71 0.0015 35.9 20.1 163 50-238 37-199 (822)
125 PRK10866 outer membrane biogen 85.0 26 0.00057 33.1 13.5 124 130-259 72-224 (243)
126 KOG1156 N-terminal acetyltrans 84.9 8.5 0.00019 41.0 10.7 107 130-242 374-516 (700)
127 PF13512 TPR_18: Tetratricopep 84.8 5.9 0.00013 34.3 8.1 72 7-82 10-82 (142)
128 KOG2796 Uncharacterized conser 84.8 24 0.00052 33.9 12.6 97 132-236 182-280 (366)
129 PF13371 TPR_9: Tetratricopept 84.6 3.8 8.2E-05 30.2 6.2 59 133-197 1-59 (73)
130 KOG0624 dsRNA-activated protei 84.4 25 0.00053 35.1 12.9 168 14-196 196-370 (504)
131 PF12802 MarR_2: MarR family; 84.4 3.1 6.7E-05 29.8 5.5 50 333-382 9-60 (62)
132 PLN03077 Protein ECB2; Provisi 84.3 76 0.0016 35.7 19.1 86 132-232 630-715 (857)
133 COG2976 Uncharacterized protei 83.7 15 0.00033 33.5 10.5 98 130-238 92-189 (207)
134 KOG0543 FKBP-type peptidyl-pro 83.7 10 0.00022 38.3 10.2 99 132-237 213-320 (397)
135 COG2976 Uncharacterized protei 83.7 3.9 8.5E-05 37.3 6.7 66 125-197 124-189 (207)
136 TIGR00540 hemY_coli hemY prote 83.6 54 0.0012 33.3 18.5 97 130-238 87-183 (409)
137 KOG2047 mRNA splicing factor [ 83.4 13 0.00028 39.8 11.2 120 22-157 154-278 (835)
138 PLN03077 Protein ECB2; Provisi 83.3 53 0.0012 36.9 17.3 93 132-234 559-651 (857)
139 KOG1941 Acetylcholine receptor 83.3 54 0.0012 33.0 15.7 177 10-200 9-195 (518)
140 PRK10803 tol-pal system protei 83.1 10 0.00022 36.3 9.9 99 13-158 148-248 (263)
141 KOG3785 Uncharacterized conser 83.0 19 0.0004 36.0 11.5 59 129-193 59-117 (557)
142 PRK15363 pathogenicity island 83.0 32 0.0007 30.3 12.5 94 132-238 40-133 (157)
143 cd00189 TPR Tetratricopeptide 82.8 5.8 0.00013 28.9 6.7 58 132-195 39-96 (100)
144 PF04733 Coatomer_E: Coatomer 82.8 23 0.00051 34.4 12.4 138 132-290 136-276 (290)
145 KOG2376 Signal recognition par 82.8 71 0.0015 34.0 16.5 154 21-189 356-513 (652)
146 KOG2376 Signal recognition par 82.7 71 0.0015 34.0 17.0 188 17-234 23-250 (652)
147 COG3118 Thioredoxin domain-con 82.5 24 0.00052 34.3 11.9 140 10-168 137-280 (304)
148 PF13512 TPR_18: Tetratricopep 81.7 34 0.00073 29.6 11.6 84 133-223 16-99 (142)
149 KOG0495 HAT repeat protein [RN 81.7 84 0.0018 34.1 23.8 264 20-331 598-863 (913)
150 PRK12370 invasion protein regu 80.9 82 0.0018 33.5 19.6 148 22-193 320-467 (553)
151 PF04703 FaeA: FaeA-like prote 80.5 2.6 5.5E-05 31.0 3.6 41 334-374 5-46 (62)
152 KOG4414 COP9 signalosome, subu 80.5 5.9 0.00013 34.2 6.3 82 280-365 73-154 (197)
153 PLN03088 SGT1, suppressor of 80.4 34 0.00073 34.3 13.0 77 132-217 41-117 (356)
154 PF02082 Rrf2: Transcriptional 80.4 7.7 0.00017 30.0 6.6 48 343-391 25-72 (83)
155 PRK09954 putative kinase; Prov 80.3 3.8 8.3E-05 41.0 6.2 55 332-386 6-63 (362)
156 smart00345 HTH_GNTR helix_turn 80.1 3.3 7.2E-05 29.1 4.2 37 338-374 14-51 (60)
157 PF01047 MarR: MarR family; I 80.0 4.6 0.0001 28.7 4.9 51 332-382 6-56 (59)
158 TIGR03504 FimV_Cterm FimV C-te 79.4 2.9 6.3E-05 28.5 3.4 25 131-155 3-27 (44)
159 smart00344 HTH_ASNC helix_turn 79.1 4 8.6E-05 33.1 4.9 48 332-379 6-56 (108)
160 PF09295 ChAPs: ChAPs (Chs5p-A 78.8 33 0.00072 35.0 12.3 56 132-194 239-295 (395)
161 PF13404 HTH_AsnC-type: AsnC-t 78.3 4.1 8.9E-05 27.4 3.9 36 332-367 6-41 (42)
162 PF13176 TPR_7: Tetratricopept 78.3 4.9 0.00011 25.6 4.2 23 132-154 4-26 (36)
163 PRK11169 leucine-responsive tr 78.2 4.1 8.9E-05 36.0 5.0 49 331-379 16-67 (164)
164 TIGR02552 LcrH_SycD type III s 78.1 21 0.00046 29.4 9.3 60 132-197 56-115 (135)
165 KOG3060 Uncharacterized conser 77.9 67 0.0014 30.8 16.8 61 17-78 23-83 (289)
166 PRK11179 DNA-binding transcrip 77.4 4.2 9.2E-05 35.4 4.8 49 331-379 11-62 (153)
167 cd00090 HTH_ARSR Arsenical Res 77.3 13 0.00029 26.9 7.0 44 344-387 21-64 (78)
168 smart00420 HTH_DEOR helix_turn 76.6 4.7 0.0001 27.5 4.0 34 342-375 13-46 (53)
169 TIGR02787 codY_Gpos GTP-sensin 76.5 9.3 0.0002 36.0 6.9 63 315-377 150-232 (251)
170 cd07377 WHTH_GntR Winged helix 76.3 7.8 0.00017 27.8 5.3 51 324-374 5-56 (66)
171 KOG0547 Translocase of outer m 76.2 82 0.0018 32.9 13.9 49 141-195 517-565 (606)
172 KOG3617 WD40 and TPR repeat-co 76.1 1.4E+02 0.003 33.5 16.1 68 132-200 917-1000(1416)
173 PF13174 TPR_6: Tetratricopept 76.1 3.5 7.7E-05 25.0 3.0 27 131-157 4-30 (33)
174 cd05804 StaR_like StaR_like; a 76.0 81 0.0018 30.7 22.1 72 172-244 269-343 (355)
175 KOG4626 O-linked N-acetylgluco 75.8 45 0.00098 35.9 12.3 59 132-196 121-179 (966)
176 PRK11189 lipoprotein NlpI; Pro 75.1 45 0.00098 32.3 11.9 93 132-237 69-161 (296)
177 smart00347 HTH_MARR helix_turn 74.4 28 0.00061 27.0 8.6 49 334-382 15-63 (101)
178 KOG3024 Uncharacterized conser 74.4 88 0.0019 30.4 15.8 46 279-324 230-275 (312)
179 PF10155 DUF2363: Uncharacteri 73.7 55 0.0012 27.7 12.4 119 19-151 2-122 (126)
180 PRK15179 Vi polysaccharide bio 73.4 1.2E+02 0.0027 33.4 15.7 133 47-197 86-218 (694)
181 PF00392 GntR: Bacterial regul 73.4 9.7 0.00021 27.7 5.1 52 324-375 4-56 (64)
182 KOG4626 O-linked N-acetylgluco 73.1 99 0.0022 33.4 13.9 183 21-235 233-415 (966)
183 smart00418 HTH_ARSR helix_turn 72.8 10 0.00022 26.6 5.2 45 341-385 8-52 (66)
184 COG1522 Lrp Transcriptional re 72.7 6.3 0.00014 34.0 4.7 48 332-379 11-61 (154)
185 KOG0985 Vesicle coat protein c 72.7 1.8E+02 0.004 33.3 19.5 165 13-199 990-1165(1666)
186 KOG1125 TPR repeat-containing 72.7 1.4E+02 0.0029 31.8 19.6 113 107-236 411-526 (579)
187 PF11817 Foie-gras_1: Foie gra 72.5 37 0.0008 32.1 10.2 79 106-185 157-236 (247)
188 COG5010 TadD Flp pilus assembl 72.4 61 0.0013 30.9 11.3 115 133-265 106-220 (257)
189 PF13371 TPR_9: Tetratricopept 71.6 17 0.00037 26.5 6.3 55 175-236 3-57 (73)
190 PF08279 HTH_11: HTH domain; 71.3 11 0.00023 26.4 4.8 41 331-371 2-43 (55)
191 KOG0495 HAT repeat protein [RN 71.2 1.6E+02 0.0035 32.1 18.9 160 54-239 523-682 (913)
192 PF00325 Crp: Bacterial regula 70.8 6.6 0.00014 24.8 3.1 30 344-373 3-32 (32)
193 TIGR02010 IscR iron-sulfur clu 70.1 9.4 0.0002 32.5 5.1 56 332-387 12-69 (135)
194 cd00092 HTH_CRP helix_turn_hel 70.0 11 0.00023 27.3 4.8 34 342-375 24-57 (67)
195 PRK02603 photosystem I assembl 69.9 67 0.0015 28.1 10.8 71 163-237 31-101 (172)
196 KOG3677 RNA polymerase I-assoc 69.8 32 0.0007 35.0 9.2 168 212-390 276-487 (525)
197 PRK15331 chaperone protein Sic 69.3 60 0.0013 28.8 10.0 93 132-237 42-134 (165)
198 smart00419 HTH_CRP helix_turn_ 69.3 6.9 0.00015 26.2 3.4 32 343-374 8-39 (48)
199 PF01022 HTH_5: Bacterial regu 69.1 14 0.0003 25.2 4.8 33 342-374 14-46 (47)
200 PF10602 RPN7: 26S proteasome 69.0 86 0.0019 28.0 13.8 63 131-193 77-139 (177)
201 TIGR02795 tol_pal_ybgF tol-pal 69.0 55 0.0012 25.8 11.4 28 48-75 3-30 (119)
202 TIGR01764 excise DNA binding d 68.7 16 0.00035 24.3 5.2 37 344-386 2-38 (49)
203 KOG1941 Acetylcholine receptor 68.6 32 0.0007 34.5 8.8 107 132-240 88-194 (518)
204 KOG2908 26S proteasome regulat 68.3 1.3E+02 0.0029 29.9 13.4 120 64-194 55-181 (380)
205 PF12862 Apc5: Anaphase-promot 68.1 39 0.00084 26.6 8.0 64 138-201 9-75 (94)
206 KOG2002 TPR-containing nuclear 68.1 2.2E+02 0.0047 32.3 21.4 227 18-259 282-540 (1018)
207 KOG0624 dsRNA-activated protei 68.1 1.4E+02 0.003 30.0 18.6 166 14-194 113-296 (504)
208 PRK11014 transcriptional repre 68.0 12 0.00026 32.1 5.4 51 338-388 20-70 (141)
209 COG1497 Predicted transcriptio 67.8 32 0.00069 32.4 8.2 73 333-413 15-87 (260)
210 TIGR03879 near_KaiC_dom probab 67.7 7.6 0.00017 29.5 3.5 35 339-373 28-62 (73)
211 PF12840 HTH_20: Helix-turn-he 67.5 14 0.0003 26.7 4.8 42 334-375 15-56 (61)
212 PF09339 HTH_IclR: IclR helix- 67.2 13 0.00029 25.8 4.5 41 334-374 8-49 (52)
213 KOG1585 Protein required for f 67.1 1.2E+02 0.0026 29.0 14.5 148 48-197 72-220 (308)
214 KOG1155 Anaphase-promoting com 67.0 97 0.0021 32.2 12.1 104 119-236 430-535 (559)
215 PF10300 DUF3808: Protein of u 67.0 64 0.0014 33.7 11.5 105 142-261 248-353 (468)
216 PF06163 DUF977: Bacterial pro 66.9 15 0.00032 31.0 5.3 45 331-375 14-58 (127)
217 COG1729 Uncharacterized protei 66.6 42 0.0009 32.2 9.0 105 10-161 144-249 (262)
218 PF13601 HTH_34: Winged helix 66.5 36 0.00077 26.2 7.2 70 334-405 5-78 (80)
219 PF12728 HTH_17: Helix-turn-he 66.0 19 0.00042 24.7 5.2 37 344-386 2-38 (51)
220 KOG0548 Molecular co-chaperone 65.7 1.8E+02 0.004 30.6 22.7 92 132-236 363-454 (539)
221 PF13428 TPR_14: Tetratricopep 65.6 14 0.0003 24.6 4.2 26 131-156 5-30 (44)
222 COG3071 HemY Uncharacterized e 65.5 1.6E+02 0.0035 29.9 17.4 99 126-236 83-181 (400)
223 PF13181 TPR_8: Tetratricopept 65.1 20 0.00042 21.9 4.6 28 169-196 3-30 (34)
224 PRK11920 rirA iron-responsive 65.0 13 0.00029 32.5 5.0 56 332-387 12-68 (153)
225 PF13174 TPR_6: Tetratricopept 64.6 14 0.0003 22.2 3.8 30 49-78 2-31 (33)
226 KOG3616 Selective LIM binding 64.1 1.7E+02 0.0036 32.4 13.5 173 9-198 603-796 (1636)
227 PRK04841 transcriptional regul 64.0 2.5E+02 0.0054 31.5 34.6 174 19-196 465-641 (903)
228 KOG1585 Protein required for f 63.5 1.4E+02 0.0031 28.5 15.3 25 282-306 227-251 (308)
229 PF04545 Sigma70_r4: Sigma-70, 63.3 16 0.00035 25.0 4.3 29 341-369 18-46 (50)
230 CHL00033 ycf3 photosystem I as 63.3 79 0.0017 27.4 9.9 88 142-237 14-101 (168)
231 COG1959 Predicted transcriptio 63.2 12 0.00026 32.6 4.4 57 331-387 11-69 (150)
232 PF04100 Vps53_N: Vps53-like, 62.9 1.8E+02 0.0039 29.5 16.8 83 142-231 58-140 (383)
233 PRK10857 DNA-binding transcrip 62.5 15 0.00033 32.5 5.0 47 342-388 24-70 (164)
234 KOG0543 FKBP-type peptidyl-pro 62.3 1.9E+02 0.004 29.5 13.4 98 129-239 259-357 (397)
235 PF13545 HTH_Crp_2: Crp-like h 62.0 9.7 0.00021 28.4 3.3 44 342-389 27-70 (76)
236 KOG3151 26S proteasome regulat 61.8 1.4E+02 0.0031 28.1 19.4 74 280-358 134-207 (260)
237 PF13181 TPR_8: Tetratricopept 61.4 22 0.00048 21.6 4.4 25 131-155 5-29 (34)
238 PF13176 TPR_7: Tetratricopept 61.3 16 0.00036 23.1 3.8 28 49-76 1-28 (36)
239 TIGR02702 SufR_cyano iron-sulf 61.0 43 0.00094 30.5 8.0 57 332-388 4-65 (203)
240 PF14947 HTH_45: Winged helix- 61.0 34 0.00073 26.0 6.1 51 334-389 11-61 (77)
241 PF13463 HTH_27: Winged helix 60.9 34 0.00074 24.7 6.0 44 339-382 14-57 (68)
242 KOG1538 Uncharacterized conser 60.7 2.5E+02 0.0055 30.6 15.0 159 51-234 649-830 (1081)
243 PF03704 BTAD: Bacterial trans 60.5 32 0.0007 29.1 6.7 67 19-92 75-145 (146)
244 PF13374 TPR_10: Tetratricopep 60.3 15 0.00033 23.3 3.6 26 131-156 6-31 (42)
245 PRK10434 srlR DNA-bindng trans 59.9 14 0.0003 35.2 4.6 44 330-373 6-49 (256)
246 COG4105 ComL DNA uptake lipopr 59.7 1.6E+02 0.0035 28.0 11.7 111 130-241 74-200 (254)
247 PRK10411 DNA-binding transcrip 59.5 15 0.00032 34.7 4.7 45 330-374 5-49 (240)
248 PF01978 TrmB: Sugar-specific 59.1 19 0.0004 26.5 4.3 40 340-379 19-58 (68)
249 PF01325 Fe_dep_repress: Iron 59.0 25 0.00055 25.5 4.8 39 336-374 15-53 (60)
250 TIGR02337 HpaR homoprotocatech 58.5 78 0.0017 25.8 8.5 47 336-382 35-81 (118)
251 PRK15359 type III secretion sy 57.9 83 0.0018 26.8 8.8 60 132-197 63-122 (144)
252 TIGR00738 rrf2_super rrf2 fami 57.8 31 0.00067 28.8 6.0 43 342-384 24-66 (132)
253 TIGR02944 suf_reg_Xantho FeS a 57.6 12 0.00026 31.5 3.4 43 342-384 24-66 (130)
254 PHA02943 hypothetical protein; 56.6 89 0.0019 27.4 8.4 75 333-412 15-89 (165)
255 PF09743 DUF2042: Uncharacteri 56.4 28 0.00062 33.5 6.1 42 339-380 126-167 (272)
256 PF04967 HTH_10: HTH DNA bindi 55.4 16 0.00034 26.0 3.1 27 342-368 22-48 (53)
257 PF07719 TPR_2: Tetratricopept 55.1 25 0.00053 21.3 3.8 28 210-237 3-30 (34)
258 smart00346 HTH_ICLR helix_turn 54.9 26 0.00057 27.0 4.7 43 333-375 9-52 (91)
259 COG3063 PilF Tfp pilus assembl 54.8 1.9E+02 0.0042 27.3 13.4 192 43-261 31-222 (250)
260 KOG1130 Predicted G-alpha GTPa 54.5 2.1E+02 0.0046 29.5 11.8 44 21-65 110-153 (639)
261 PRK13509 transcriptional repre 54.3 20 0.00044 34.0 4.7 45 330-374 6-50 (251)
262 KOG0550 Molecular chaperone (D 53.9 2.4E+02 0.0051 29.1 12.0 171 132-315 174-351 (486)
263 PF07719 TPR_2: Tetratricopept 53.3 38 0.00082 20.4 4.5 26 171-196 5-30 (34)
264 PRK10906 DNA-binding transcrip 52.4 22 0.00048 33.8 4.6 45 330-374 6-50 (252)
265 PRK04424 fatty acid biosynthes 52.2 16 0.00035 33.0 3.5 45 330-374 8-52 (185)
266 PF07721 TPR_4: Tetratricopept 51.1 29 0.00064 20.2 3.4 22 130-151 4-25 (26)
267 PF08221 HTH_9: RNA polymerase 51.0 60 0.0013 23.6 5.7 38 337-374 21-58 (62)
268 TIGR01889 Staph_reg_Sar staphy 50.2 1E+02 0.0022 25.0 7.7 42 341-382 41-82 (109)
269 PF01726 LexA_DNA_bind: LexA D 48.7 38 0.00083 25.0 4.4 32 343-374 25-57 (65)
270 PF00244 14-3-3: 14-3-3 protei 48.4 2.4E+02 0.0051 26.5 18.4 31 50-80 4-34 (236)
271 TIGR01610 phage_O_Nterm phage 48.1 56 0.0012 25.9 5.7 47 340-388 44-90 (95)
272 KOG1129 TPR repeat-containing 47.8 3E+02 0.0065 27.5 17.0 92 51-155 227-318 (478)
273 KOG0550 Molecular chaperone (D 47.7 3.3E+02 0.0073 28.0 16.2 98 132-240 254-353 (486)
274 COG1675 TFA1 Transcription ini 47.3 2.1E+02 0.0045 25.7 9.6 50 343-392 32-83 (176)
275 PF04760 IF2_N: Translation in 47.3 23 0.0005 24.8 3.0 25 342-366 2-26 (54)
276 COG1349 GlpR Transcriptional r 46.9 29 0.00062 33.0 4.5 45 330-374 6-50 (253)
277 KOG1128 Uncharacterized conser 46.8 1.2E+02 0.0027 33.1 9.3 128 130-263 401-552 (777)
278 TIGR02844 spore_III_D sporulat 46.5 28 0.00061 27.0 3.5 34 330-364 7-40 (80)
279 PRK14165 winged helix-turn-hel 46.2 1.2E+02 0.0025 28.3 8.2 56 335-390 13-68 (217)
280 PF02002 TFIIE_alpha: TFIIE al 45.3 25 0.00054 28.4 3.3 51 341-391 25-77 (105)
281 PF13730 HTH_36: Helix-turn-he 45.2 28 0.0006 24.2 3.1 29 345-373 27-55 (55)
282 KOG4340 Uncharacterized conser 44.6 3.2E+02 0.007 27.0 11.2 88 136-240 87-178 (459)
283 TIGR03504 FimV_Cterm FimV C-te 44.4 38 0.00083 23.0 3.5 40 51-90 3-42 (44)
284 PRK09802 DNA-binding transcrip 44.1 34 0.00074 32.8 4.5 45 330-374 18-62 (269)
285 PF04348 LppC: LppC putative l 44.0 7.6 0.00016 41.3 0.0 101 127-234 24-124 (536)
286 PF08280 HTH_Mga: M protein tr 44.0 54 0.0012 23.5 4.5 39 330-368 6-44 (59)
287 PRK10681 DNA-binding transcrip 43.7 29 0.00063 32.9 3.9 39 330-368 8-46 (252)
288 PF00515 TPR_1: Tetratricopept 43.4 46 0.00099 20.2 3.7 27 210-236 3-29 (34)
289 COG2345 Predicted transcriptio 43.3 55 0.0012 30.5 5.5 45 332-376 14-58 (218)
290 PRK15179 Vi polysaccharide bio 43.1 5E+02 0.011 28.7 19.0 114 106-238 105-218 (694)
291 PF05470 eIF-3c_N: Eukaryotic 43.0 4.7E+02 0.01 28.3 13.8 90 146-236 435-528 (595)
292 TIGR01884 cas_HTH CRISPR locus 42.7 73 0.0016 29.0 6.4 42 336-377 150-191 (203)
293 smart00531 TFIIE Transcription 42.6 1.3E+02 0.0029 25.9 7.6 52 340-391 12-68 (147)
294 PF12688 TPR_5: Tetratrico pep 42.2 2E+02 0.0044 23.9 12.4 99 131-236 5-103 (120)
295 COG4235 Cytochrome c biogenesi 42.0 3.4E+02 0.0073 26.4 12.4 96 120-232 155-251 (287)
296 PRK03902 manganese transport t 41.3 2E+02 0.0043 24.4 8.5 51 336-389 15-65 (142)
297 KOG1070 rRNA processing protei 40.3 7.3E+02 0.016 29.8 20.1 77 107-193 1550-1626(1710)
298 PF03081 Exo70: Exo70 exocyst 40.2 68 0.0015 32.0 6.2 80 283-367 292-371 (371)
299 KOG3252 Uncharacterized conser 39.8 1.1E+02 0.0025 27.6 6.6 93 281-387 96-189 (217)
300 KOG2235 Uncharacterized conser 39.7 1.4E+02 0.0031 32.0 8.3 61 319-386 114-174 (776)
301 KOG1861 Leucine permease trans 39.5 2.1E+02 0.0045 29.8 9.2 53 134-190 355-410 (540)
302 PF05331 DUF742: Protein of un 39.4 49 0.0011 27.5 4.1 43 332-376 46-88 (114)
303 KOG1070 rRNA processing protei 39.2 4.2E+02 0.0091 31.7 12.4 95 131-236 1534-1628(1710)
304 COG4700 Uncharacterized protei 38.9 2.9E+02 0.0064 25.4 9.2 99 131-239 93-191 (251)
305 KOG0553 TPR repeat-containing 38.6 2.8E+02 0.0062 27.1 9.7 100 137-251 91-190 (304)
306 PRK11534 DNA-binding transcrip 38.5 71 0.0015 29.3 5.7 62 322-385 9-70 (224)
307 KOG2582 COP9 signalosome, subu 38.5 3.7E+02 0.0081 27.2 10.6 67 130-196 143-212 (422)
308 PF10300 DUF3808: Protein of u 38.3 4.8E+02 0.01 27.2 13.3 115 107-234 249-373 (468)
309 KOG3617 WD40 and TPR repeat-co 38.3 6.4E+02 0.014 28.6 14.8 121 52-194 762-885 (1416)
310 PF09613 HrpB1_HrpK: Bacterial 38.2 2.8E+02 0.0062 24.5 9.1 56 174-236 17-72 (160)
311 PF05584 Sulfolobus_pRN: Sulfo 38.2 87 0.0019 23.8 4.9 33 343-375 18-50 (72)
312 KOG0547 Translocase of outer m 38.0 2.6E+02 0.0056 29.4 9.7 92 130-234 329-420 (606)
313 PF10078 DUF2316: Uncharacteri 37.3 30 0.00065 27.4 2.4 24 342-365 22-45 (89)
314 PRK11512 DNA-binding transcrip 37.2 69 0.0015 27.3 5.0 45 342-386 53-97 (144)
315 KOG1129 TPR repeat-containing 36.8 4.5E+02 0.0097 26.4 13.5 131 86-236 178-318 (478)
316 PF14493 HTH_40: Helix-turn-he 36.5 39 0.00084 26.5 3.0 33 342-374 12-45 (91)
317 PF04539 Sigma70_r3: Sigma-70 36.5 49 0.0011 24.8 3.5 37 331-367 7-44 (78)
318 TIGR03826 YvyF flagellar opero 36.5 39 0.00084 29.1 3.2 36 340-379 43-78 (137)
319 PF13542 HTH_Tnp_ISL3: Helix-t 36.4 89 0.0019 21.2 4.6 24 344-367 28-51 (52)
320 PF04124 Dor1: Dor1-like famil 36.3 4.4E+02 0.0095 26.1 11.6 42 52-96 111-152 (338)
321 PF10007 DUF2250: Uncharacteri 36.1 70 0.0015 25.5 4.4 43 332-374 10-52 (92)
322 PF04492 Phage_rep_O: Bacterio 35.9 88 0.0019 25.3 5.0 35 339-373 50-84 (100)
323 PF08281 Sigma70_r4_2: Sigma-7 35.9 38 0.00083 23.4 2.6 29 340-368 23-51 (54)
324 PF07079 DUF1347: Protein of u 35.9 5.3E+02 0.012 27.0 19.0 261 13-305 134-420 (549)
325 PF00440 TetR_N: Bacterial reg 35.8 64 0.0014 21.7 3.7 30 332-361 4-34 (47)
326 TIGR03338 phnR_burk phosphonat 35.6 1.2E+02 0.0025 27.6 6.5 63 323-387 14-76 (212)
327 PRK13777 transcriptional regul 35.4 2.4E+02 0.0052 25.5 8.3 50 334-383 50-99 (185)
328 KOG0985 Vesicle coat protein c 35.2 7.8E+02 0.017 28.7 16.2 22 132-153 611-632 (1666)
329 PF14689 SPOB_a: Sensor_kinase 35.1 1.7E+02 0.0038 21.1 7.0 50 107-159 6-55 (62)
330 KOG4234 TPR repeat-containing 35.0 3.6E+02 0.0079 25.1 9.2 115 215-333 102-219 (271)
331 KOG2047 mRNA splicing factor [ 35.0 5.5E+02 0.012 28.1 11.8 38 165-207 656-693 (835)
332 KOG0551 Hsp90 co-chaperone CNS 34.8 3E+02 0.0065 27.5 9.2 73 134-213 88-160 (390)
333 PF12793 SgrR_N: Sugar transpo 34.7 1.8E+02 0.0039 24.1 6.8 48 342-389 18-68 (115)
334 PF10516 SHNi-TPR: SHNi-TPR; 34.5 95 0.0021 20.3 4.1 33 169-201 3-35 (38)
335 PRK04239 hypothetical protein; 34.5 30 0.00064 28.6 2.1 50 328-379 37-88 (110)
336 PRK03573 transcriptional regul 34.4 2.8E+02 0.0061 23.3 8.7 42 343-384 46-87 (144)
337 PF12169 DNA_pol3_gamma3: DNA 34.4 2.4E+02 0.0051 23.7 7.9 112 220-352 26-142 (143)
338 smart00028 TPR Tetratricopepti 34.3 60 0.0013 17.8 3.1 23 132-154 6-28 (34)
339 COG3413 Predicted DNA binding 34.2 38 0.00081 31.2 3.0 47 323-369 157-204 (215)
340 PF10579 Rapsyn_N: Rapsyn N-te 34.1 1.5E+02 0.0033 22.9 5.7 49 17-69 16-65 (80)
341 PF12324 HTH_15: Helix-turn-he 33.9 75 0.0016 24.4 4.0 36 333-368 28-63 (77)
342 PLN03098 LPA1 LOW PSII ACCUMUL 33.8 2.1E+02 0.0046 29.7 8.5 62 131-196 79-141 (453)
343 PF13934 ELYS: Nuclear pore co 33.7 3.9E+02 0.0085 24.8 10.8 138 203-371 76-215 (226)
344 cd06171 Sigma70_r4 Sigma70, re 33.5 96 0.0021 20.3 4.4 27 342-368 25-51 (55)
345 COG4700 Uncharacterized protei 33.2 3.1E+02 0.0067 25.3 8.4 100 127-238 124-223 (251)
346 PF05843 Suf: Suppressor of fo 33.0 4.4E+02 0.0096 25.2 12.5 135 170-316 4-141 (280)
347 PF10668 Phage_terminase: Phag 33.0 69 0.0015 23.4 3.5 33 333-365 12-44 (60)
348 COG2909 MalT ATP-dependent tra 32.7 5.7E+02 0.012 28.9 11.9 105 128-234 416-523 (894)
349 PF12854 PPR_1: PPR repeat 32.6 59 0.0013 20.3 2.9 21 132-152 12-32 (34)
350 KOG1173 Anaphase-promoting com 32.5 1.5E+02 0.0032 31.5 7.2 68 122-197 452-519 (611)
351 KOG2034 Vacuolar sorting prote 32.5 1.1E+02 0.0024 34.2 6.4 58 174-241 365-422 (911)
352 TIGR02812 fadR_gamma fatty aci 32.5 1.2E+02 0.0026 28.0 6.2 62 323-386 9-71 (235)
353 PF01535 PPR: PPR repeat; Int 32.4 64 0.0014 18.7 2.9 24 132-155 5-28 (31)
354 KOG1173 Anaphase-promoting com 32.3 6.6E+02 0.014 26.9 13.7 92 130-234 247-338 (611)
355 PRK10870 transcriptional repre 32.1 2.3E+02 0.0049 25.2 7.6 43 342-384 70-112 (176)
356 KOG3060 Uncharacterized conser 32.1 4.7E+02 0.01 25.2 17.8 91 132-236 125-219 (289)
357 KOG3431 Apoptosis-related prot 32.0 40 0.00087 28.2 2.4 54 326-379 38-91 (129)
358 KOG1126 DNA-binding cell divis 32.0 1.3E+02 0.0029 32.3 6.8 89 132-233 494-582 (638)
359 PRK10225 DNA-binding transcrip 31.7 1.4E+02 0.003 28.0 6.6 64 322-387 11-75 (257)
360 PF10771 DUF2582: Protein of u 31.5 1.3E+02 0.0028 22.3 4.9 49 336-386 15-63 (65)
361 PF13518 HTH_28: Helix-turn-he 31.5 61 0.0013 21.9 3.1 37 343-380 12-48 (52)
362 COG1846 MarR Transcriptional r 31.4 2.5E+02 0.0054 22.2 7.4 36 347-382 40-75 (126)
363 KOG1258 mRNA processing protei 31.1 6.9E+02 0.015 26.8 12.4 110 122-238 359-471 (577)
364 PRK03837 transcriptional regul 30.8 1.6E+02 0.0035 27.2 6.8 62 323-386 16-78 (241)
365 TIGR00498 lexA SOS regulatory 30.7 71 0.0015 28.9 4.2 38 344-381 26-64 (199)
366 PRK11414 colanic acid/biofilm 30.2 96 0.0021 28.4 5.1 60 323-384 14-73 (221)
367 PF08672 APC2: Anaphase promot 30.1 80 0.0017 23.0 3.5 25 352-376 30-54 (60)
368 PF13431 TPR_17: Tetratricopep 30.1 41 0.0009 21.1 1.8 16 132-147 18-33 (34)
369 PRK15363 pathogenicity island 29.9 3.9E+02 0.0084 23.5 10.5 62 132-199 74-135 (157)
370 PF13812 PPR_3: Pentatricopept 29.9 1.1E+02 0.0023 18.2 3.8 27 49-75 3-29 (34)
371 PF12862 Apc5: Anaphase-promot 29.8 2E+02 0.0043 22.5 6.2 38 130-167 44-81 (94)
372 PHA00738 putative HTH transcri 29.7 3.2E+02 0.0069 22.5 8.1 72 335-409 18-89 (108)
373 PF04097 Nic96: Nup93/Nic96; 29.7 7.5E+02 0.016 26.8 16.4 123 14-160 335-460 (613)
374 COG3629 DnrI DNA-binding trans 29.5 5.3E+02 0.012 25.0 10.7 61 130-196 156-216 (280)
375 smart00421 HTH_LUXR helix_turn 29.5 1.1E+02 0.0024 20.6 4.2 29 341-369 16-44 (58)
376 COG1802 GntR Transcriptional r 29.1 89 0.0019 28.9 4.7 55 322-376 18-72 (230)
377 PRK10046 dpiA two-component re 29.1 99 0.0021 28.3 4.9 43 337-379 171-213 (225)
378 cd00280 TRFH Telomeric Repeat 28.7 2.9E+02 0.0062 25.2 7.4 54 22-75 85-139 (200)
379 cd04762 HTH_MerR-trunc Helix-T 28.1 94 0.002 20.2 3.5 37 345-386 2-38 (49)
380 TIGR00756 PPR pentatricopeptid 28.1 91 0.002 18.3 3.2 24 132-155 5-28 (35)
381 PF01984 dsDNA_bind: Double-st 27.8 47 0.001 27.2 2.2 48 332-379 36-83 (107)
382 COG4235 Cytochrome c biogenesi 27.0 6E+02 0.013 24.8 14.2 141 17-173 133-273 (287)
383 PF00403 HMA: Heavy-metal-asso 27.0 1.5E+02 0.0033 20.8 4.6 45 358-405 14-58 (62)
384 COG4565 CitB Response regulato 26.5 4.7E+02 0.01 24.4 8.6 49 331-379 160-209 (224)
385 cd06170 LuxR_C_like C-terminal 26.4 1.2E+02 0.0026 20.4 3.9 29 341-369 13-41 (57)
386 PRK04984 fatty acid metabolism 26.2 1.8E+02 0.004 26.8 6.3 61 324-386 11-72 (239)
387 PF13041 PPR_2: PPR repeat fam 25.7 99 0.0021 20.8 3.3 25 132-156 8-32 (50)
388 PRK14511 maltooligosyl trehalo 25.5 56 0.0012 36.8 2.9 36 348-383 263-305 (879)
389 PRK14720 transcript cleavage f 25.5 1.1E+03 0.023 27.1 17.7 194 18-254 43-250 (906)
390 PF09743 DUF2042: Uncharacteri 25.4 1.8E+02 0.0039 28.0 6.1 51 326-379 178-228 (272)
391 PRK09464 pdhR transcriptional 25.1 1.9E+02 0.0041 27.1 6.2 63 323-387 13-76 (254)
392 KOG0545 Aryl-hydrocarbon recep 25.1 5.5E+02 0.012 24.7 8.8 38 214-251 184-227 (329)
393 KOG1586 Protein required for f 24.7 6.2E+02 0.013 24.2 18.9 170 22-196 30-224 (288)
394 PF04184 ST7: ST7 protein; In 24.6 3.1E+02 0.0067 28.9 7.8 57 131-191 263-319 (539)
395 TIGR02561 HrpB1_HrpK type III 24.2 4.9E+02 0.011 22.8 9.4 56 174-236 17-72 (153)
396 PF14669 Asp_Glu_race_2: Putat 24.1 5.7E+02 0.012 23.6 11.2 139 49-195 53-209 (233)
397 PRK09334 30S ribosomal protein 24.1 2.1E+02 0.0046 22.5 5.1 37 340-376 38-74 (86)
398 PF03297 Ribosomal_S25: S25 ri 23.9 3.1E+02 0.0068 22.4 6.3 48 338-385 54-101 (105)
399 KOG0551 Hsp90 co-chaperone CNS 23.9 3E+02 0.0065 27.5 7.1 88 139-230 54-141 (390)
400 COG4367 Uncharacterized protei 23.8 72 0.0016 25.1 2.4 25 341-365 21-45 (97)
401 PF01710 HTH_Tnp_IS630: Transp 23.7 1E+02 0.0023 25.4 3.6 37 331-367 59-95 (119)
402 PRK11753 DNA-binding transcrip 23.1 1.5E+02 0.0032 26.5 4.9 42 343-388 168-209 (211)
403 PRK15090 DNA-binding transcrip 22.9 1.4E+02 0.0031 28.1 4.9 42 334-375 19-60 (257)
404 PRK10153 DNA-binding transcrip 22.6 3E+02 0.0065 29.1 7.6 51 177-235 430-480 (517)
405 KOG3785 Uncharacterized conser 22.5 8.3E+02 0.018 24.8 16.7 133 10-156 25-180 (557)
406 PRK10421 DNA-binding transcrip 22.4 2.4E+02 0.0052 26.4 6.3 63 323-387 5-68 (253)
407 PRK12514 RNA polymerase sigma 22.4 1.5E+02 0.0033 25.9 4.7 44 322-368 127-170 (179)
408 KOG3616 Selective LIM binding 22.4 1.1E+03 0.024 26.4 16.5 208 9-232 447-685 (1636)
409 PF13959 DUF4217: Domain of un 22.0 2.6E+02 0.0056 20.4 5.1 30 327-356 29-58 (65)
410 PHA02591 hypothetical protein; 21.9 80 0.0017 24.3 2.3 24 343-366 59-82 (83)
411 cd04761 HTH_MerR-SF Helix-Turn 21.8 1.5E+02 0.0032 19.6 3.6 37 345-386 2-38 (49)
412 KOG4555 TPR repeat-containing 21.7 5.4E+02 0.012 22.3 13.8 110 137-259 53-166 (175)
413 PF06971 Put_DNA-bind_N: Putat 21.6 93 0.002 21.8 2.4 25 341-365 26-50 (50)
414 KOG2796 Uncharacterized conser 21.1 7.8E+02 0.017 24.0 12.4 87 105-196 195-281 (366)
415 TIGR02394 rpoS_proteo RNA poly 21.1 1.5E+02 0.0033 28.5 4.7 31 338-368 237-267 (285)
416 COG1729 Uncharacterized protei 21.1 2.5E+02 0.0054 27.0 6.0 63 18-84 190-252 (262)
417 PRK13918 CRP/FNR family transc 21.1 1.3E+02 0.0028 26.8 4.0 43 343-389 149-191 (202)
418 KOG1127 TPR repeat-containing 21.0 1.2E+03 0.026 27.1 11.6 134 9-154 4-181 (1238)
419 PLN03083 E3 UFM1-protein ligas 20.9 3.6E+02 0.0077 30.2 7.8 49 335-386 126-174 (803)
420 PF06969 HemN_C: HemN C-termin 20.7 3.2E+02 0.007 19.4 6.1 56 328-388 6-62 (66)
421 PF04297 UPF0122: Putative hel 20.6 94 0.002 25.2 2.6 43 326-368 14-58 (101)
422 PF13613 HTH_Tnp_4: Helix-turn 20.6 1.5E+02 0.0033 20.5 3.4 38 331-368 7-44 (53)
423 PF09986 DUF2225: Uncharacteri 20.5 6.7E+02 0.015 23.0 10.3 114 137-251 87-208 (214)
424 cd06571 Bac_DnaA_C C-terminal 20.4 2.7E+02 0.0059 21.6 5.2 42 287-328 48-89 (90)
425 PF03444 HrcA_DNA-bdg: Winged 20.3 3.3E+02 0.0072 21.0 5.4 56 329-384 9-64 (78)
426 cd00280 TRFH Telomeric Repeat 20.3 5.8E+02 0.013 23.3 7.7 51 143-195 85-139 (200)
427 KOG4162 Predicted calmodulin-b 20.2 1.2E+03 0.027 25.9 17.3 62 167-235 650-711 (799)
428 PF07319 DnaI_N: Primosomal pr 20.1 88 0.0019 24.8 2.4 33 309-341 25-61 (94)
No 1
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-82 Score=593.36 Aligned_cols=401 Identities=60% Similarity=0.916 Sum_probs=388.8
Q ss_pred cchHHHHHhhcCC-hHHHHHHHHhhcCC---CCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH
Q 014555 9 TTDSIAQAKEASN-PSDAISMLYRVLDD---PSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK 84 (422)
Q Consensus 9 ~~~~~ak~~~~~~-~~~Ai~~l~~i~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~ 84 (422)
+..+.|+.+.+.+ .++++..|..|.+. .+++++.++.+|.++.++++++.+.|+.+++.++++++++|+++++|++
T Consensus 6 ~~~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Kak 85 (411)
T KOG1463|consen 6 SLLERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKAK 85 (411)
T ss_pred HHHHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhHH
Confidence 3577888888887 49999999999984 4577778999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 85 TAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 85 ~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
++|+||.++|.+..+|++.+.+++||++||+||..|+|.|||++|+.||+.+|.+.++|.+|+.+++.++.|+++.||+.
T Consensus 86 aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~ 165 (411)
T KOG1463|consen 86 AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKI 165 (411)
T ss_pred HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999999989999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCC-
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED- 243 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~- 243 (422)
.++|++++|++.|+.++|++|||+.++.|++.+|++||||.+||.++.++|++|+.++||++|++||||||++|++.++
T Consensus 166 lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~ 245 (411)
T KOG1463|consen 166 LLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD 245 (411)
T ss_pred ceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHH
Q 014555 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLS 323 (422)
Q Consensus 244 ~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~ 323 (422)
+++...||||+||+||.+.+++++.+++++.+..|.+|.+++|+.+..||.++++..|+..|..|+.++..||+++.|+.
T Consensus 246 v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~~D~ivr~Hl~ 325 (411)
T KOG1463|consen 246 VKALTSLKYMLLCKIMLNLPDDVAALLSAKLALKYAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELAEDPIVRSHLQ 325 (411)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHhccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHhcChHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHH
Q 014555 324 SLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETI 403 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~ 403 (422)
.|++++.|+||.++++|||+|.+++||+.+|+|++.||+.|++||+|+++.|.+||++|+++++++++.++.|+..++++
T Consensus 326 ~Lyd~lLEknl~riIEPyS~Vei~hIA~~IGl~~~~VEkKLsqMILDKkf~G~LDQg~g~Liv~~e~~~d~~y~~aLetI 405 (411)
T KOG1463|consen 326 SLYDNLLEKNLCRIIEPYSRVEISHIAEVIGLDVPQVEKKLSQMILDKKFYGTLDQGEGCLIVFEEPPADNTYDAALETI 405 (411)
T ss_pred HHHHHHHHHhHHHHcCchhhhhHHHHHHHHCCCcHHHHHHHHHHHHHHHhhcccccCCCeEEEeCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q 014555 404 SNMGKV 409 (422)
Q Consensus 404 ~~l~~l 409 (422)
++++.|
T Consensus 406 ~~m~kV 411 (411)
T KOG1463|consen 406 QNMGKV 411 (411)
T ss_pred HhccCC
Confidence 998754
No 2
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.5e-73 Score=522.63 Aligned_cols=410 Identities=42% Similarity=0.660 Sum_probs=392.2
Q ss_pred hHHHHHhhc-CChHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 11 DSIAQAKEA-SNPSDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 11 ~~~ak~~~~-~~~~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
++.|+...+ .+.++|+..+..|+.+. +.++......+.++.++.++|...|+++.+.+++++.++.|.+++|++++|+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 666666554 46899999999999874 3445567899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
||++++.+...|++.+.++++++.+|+||..|+|.|||+.|+++|+.++++.|.|.+|+.+++.++.|+++.||+..+++
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~ 166 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLIT 166 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccC-ChhHH
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALE-DPRAV 247 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~-~~~~~ 247 (422)
++++++++|++.+|++++|+.++.|++.++++||||.++|.++.++|++|+.++||++|++||+|||++|.... +.++.
T Consensus 167 vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc 246 (421)
T COG5159 167 VHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKAC 246 (421)
T ss_pred hhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHHHHHhccccccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998764 46899
Q ss_pred HHHHHHHHHHHHhcCccchhhhhccccccc-ccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHH
Q 014555 248 FSLKYMLLCKIMVSQADDVAGIISSKAGLQ-YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLY 326 (422)
Q Consensus 248 ~~lky~vL~~lL~~~~~el~~ll~~~~~~~-~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~ 326 (422)
..|+||+|+.||.+.+.++..++.++.+.+ |.++.|.+|+.+.++|.|+++..|...|++|.+++..||+++.|++.|+
T Consensus 247 ~sLkYmlLSkIMlN~~~evk~vl~~K~t~~~y~~r~I~am~avaea~~NRsL~df~~aL~qY~~el~~D~~iRsHl~~LY 326 (421)
T COG5159 247 VSLKYMLLSKIMLNRREEVKAVLRNKNTLKHYDDRMIRAMLAVAEAFGNRSLKDFSDALAQYSDELHQDSFIRSHLQYLY 326 (421)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHccchhHhhhhhhhHHHHHHHHHHhCCCcHhhHHHHHHHhhHHhccCHHHHHHHHHHH
Confidence 999999999999999999999999998887 6888999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHH
Q 014555 327 DTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNM 406 (422)
Q Consensus 327 ~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l 406 (422)
+.+.++||+++++||++|.+++||+.+|+++.+||..|++||+|+-++|.+||++|+++++++++.+..|+.+.+.++++
T Consensus 327 D~LLe~Nl~kiiEPfs~VeishIa~viGldt~qvEgKLsqMILDKifyG~LDqg~gcLivy~ep~qd~tyd~ale~v~~l 406 (421)
T COG5159 327 DVLLEKNLVKIIEPFSVVEISHIADVIGLDTNQVEGKLSQMILDKIFYGTLDQGDGCLIVYGEPAQDNTYDEALEQVEAL 406 (421)
T ss_pred HHHHHhhhhhhcCcceeeehhHHHHHhcccHHHHHHHHHHHHHHHHHHhhhccCCceEEEeCCccccchHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhh
Q 014555 407 GKVVDSLFVRSAKI 420 (422)
Q Consensus 407 ~~l~~~l~~~~~~~ 420 (422)
+.+||.+|+||..+
T Consensus 407 ~~vVd~l~ekas~l 420 (421)
T COG5159 407 DCVVDSLYEKASAL 420 (421)
T ss_pred hhHHHHHHHHHhhc
Confidence 99999999999765
No 3
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=100.00 E-value=8.1e-69 Score=491.54 Aligned_cols=390 Identities=23% Similarity=0.369 Sum_probs=361.3
Q ss_pred HHHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh-cccchhHHHHHHHH
Q 014555 13 IAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF-SLIPKAKTAKIVRG 91 (422)
Q Consensus 13 ~ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~~~k~~~~k~v~~ 91 (422)
.+|++++++|++|+..|++|+..+... ..|.|+|+++++++++..|++++|++.++.+..+. +.|++++++|+|+.
T Consensus 34 nsK~l~e~~p~~Al~sF~kVlelEgEK---geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~ 110 (440)
T KOG1464|consen 34 NSKGLKEDEPKEALSSFQKVLELEGEK---GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINS 110 (440)
T ss_pred ccccccccCHHHHHHHHHHHHhccccc---chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 689999999999999999999987544 45999999999999999999999999999999998 88999999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHH------hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc---c
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTR------AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD---D 162 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~------~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~---~ 162 (422)
|+|+++. ..++.|+.+|.+.+- .+.|+|+++ +.+|+++|++.|+|.+-.+++..+.+.|...+ |
T Consensus 111 IlDyiSt-----S~~m~LLQ~FYeTTL~ALkdAKNeRLWFKT--NtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD 183 (440)
T KOG1464|consen 111 ILDYIST-----SKNMDLLQEFYETTLDALKDAKNERLWFKT--NTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDD 183 (440)
T ss_pred HHHHHhh-----hhhhHHHHHHHHHHHHHHHhhhcceeeeec--cchHhhhheeHHHHHHHHHHHHHHHHHhccccCchh
Confidence 9999983 345677777777653 356999999 55999999999999998888888888887653 2
Q ss_pred ---chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 163 ---KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 163 ---~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
++.++|+|..++++|...+|.++.+.+|++|..+.++|| ||.++|.|++|+|++|+.+|.|..|...|||||++|+
T Consensus 184 ~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP-HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYD 262 (440)
T KOG1464|consen 184 QKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP-HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYD 262 (440)
T ss_pred hhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC-chHHHhHHHHcCCccccccchHHHHHhHHHHHHhccc
Confidence 689999999999999999999999999999999999999 8999999999999999999999999999999999999
Q ss_pred ccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccc-cCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhH
Q 014555 240 ALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQY-VGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIV 318 (422)
Q Consensus 240 ~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~-~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l 318 (422)
+.|+|++..||||+||+.||..+ +++| |+++++.+| ++|+|-+|..|+.||+++|+.+|+.++..++..++.|||+
T Consensus 263 EsGspRRttCLKYLVLANMLmkS--~iNP-FDsQEAKPyKNdPEIlAMTnlv~aYQ~NdI~eFE~Il~~~~~~IM~DpFI 339 (440)
T KOG1464|consen 263 ESGSPRRTTCLKYLVLANMLMKS--GINP-FDSQEAKPYKNDPEILAMTNLVAAYQNNDIIEFERILKSNRSNIMDDPFI 339 (440)
T ss_pred ccCCcchhHHHHHHHHHHHHHHc--CCCC-CcccccCCCCCCHHHHHHHHHHHHHhcccHHHHHHHHHhhhccccccHHH
Confidence 99999999999999999999988 7899 899999999 6899999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCch-hhHHH
Q 014555 319 HRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKA-DAIYP 397 (422)
Q Consensus 319 ~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~-~~~~~ 397 (422)
+.|+.+|.++||.+.|+++++||++|.+.+|++.|++|+.+||.+|+.+|+|.+|.|+||++++++...+.... ...|.
T Consensus 340 Reh~EdLl~niRTQVLlkLIkPYt~i~Ipfis~~Lnv~~~dV~~LLV~~ILD~~i~g~Ide~n~~l~~~~~~~s~~k~~~ 419 (440)
T KOG1464|consen 340 REHIEDLLRNIRTQVLLKLIKPYTNIGIPFISKELNVPEADVESLLVSCILDDTIDGRIDEVNQYLELDKSKNSGSKLYK 419 (440)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccCchhhHhhcCCCHHHHHHHHHHHHhccccccchHHhhhHhccCccCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999765543 34599
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 014555 398 ATLETISNMGKVVDSLFVR 416 (422)
Q Consensus 398 ~l~~~~~~l~~l~~~l~~~ 416 (422)
.+..|.+++.++-..+..|
T Consensus 420 al~kW~~ql~Sl~~~i~sr 438 (440)
T KOG1464|consen 420 ALDKWNNQLKSLQSNIVSR 438 (440)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 9999999999988777665
No 4
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.1e-54 Score=410.68 Aligned_cols=399 Identities=17% Similarity=0.201 Sum_probs=356.1
Q ss_pred ccchHHHHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHH
Q 014555 8 ATTDSIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 8 ~~~~~~ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k 87 (422)
.+.+|.+++++..+.++|++.|+.++++++.++ ++..+.|++..++++|+++++|+.|++++..|++++|+ .|+++++
T Consensus 14 ~e~~~~~~~la~~~~~~~ie~Ll~~EkqtR~~~-D~~s~~kv~~~i~~lc~~~~~w~~Lne~i~~Lskkrgq-lk~ai~~ 91 (439)
T KOG1498|consen 14 DELLPKANNLAQIDLEAAIEELLNLEKQTRLAS-DMASNTKVLEEIMKLCFSAKDWDLLNEQIRLLSKKRGQ-LKQAIQS 91 (439)
T ss_pred HHhhHhhhhhhhhhHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH-HHHHHHH
Confidence 368889999998889999999999999998776 49999999999999999999999999999999999996 4999999
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH---hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 88 IVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL---RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l---r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
||++++.+++++|+ .+.++.++++++.++ +||+|+ |+||+..|+++++..||..+|+++++++++|++++++++
T Consensus 92 Mvq~~~~y~~~~~d-~~~k~~li~tLr~Vt--egkIyvEvERarlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ 168 (439)
T KOG1498|consen 92 MVQQAMTYIDGTPD-LETKIKLIETLRTVT--EGKIYVEVERARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKS 168 (439)
T ss_pred HHHHHHHhccCCCC-chhHHHHHHHHHHhh--cCceEEeehHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHH
Confidence 99999999999997 588999999999997 899999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh---hHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ---QGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i---~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
.++.++|+|+|+|+..+||.+|..+. +++..+....|.. .-.|++..-.++.+++.|-+++++|.+++.+....
T Consensus 169 ekV~fiLEQmrKOG~~~D~vra~i~s---kKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk 245 (439)
T KOG1498|consen 169 EKVAFILEQMRLCLLRLDYVRAQIIS---KKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVK 245 (439)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHH---HHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhcccccc
Confidence 99999999999999999999998774 4444444434444 35677778888889999999999999998877655
Q ss_pred CCh-hHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhH--
Q 014555 242 EDP-RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIV-- 318 (422)
Q Consensus 242 ~~~-~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l-- 318 (422)
.+| .|...+.-.++.++|++..++.++++++... .-...++|.+..++++|.++++..|....+.|.+.+..+.++
T Consensus 246 ~d~~kw~~vL~~iv~f~~LAp~dneQsdll~~is~-dKkL~e~p~~k~lLklfv~~EL~rw~s~~~~yg~~l~~~~~~~~ 324 (439)
T KOG1498|consen 246 EDPEKWIEVLRSIVSFCVLAPHDNEQSDLLARISN-DKKLSELPDYKELLKLFVTMELIRWVSLVESYGDELRTNDFFDG 324 (439)
T ss_pred cChhhhhhhhhhheeEEeecCCCcHHHHHHHHHhc-ccccccCccHHHHHHHHHhcceeeehhHhhhhHHHHhhcccccc
Confidence 554 7899999999999999998888887776642 224567889999999999999999998888999988877543
Q ss_pred ----HHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhh
Q 014555 319 ----HRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADA 394 (422)
Q Consensus 319 ----~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~ 394 (422)
..||++|..+|.|||++.+.++||||++.++|+++|+|+++.|.+||.|+..|.+.||||+|+|++.|..+...
T Consensus 325 ~~~gek~~~dL~~RIiEHNiRiiA~yYSrIt~~rl~eLLdl~~ee~E~~LS~lv~t~ti~aKidrpsgII~F~k~K~~-- 402 (439)
T KOG1498|consen 325 GEEGEKRWSDLKLRIIEHNIRIIAKYYSRITLKRLAELLDLPVEEMEKFLSDLVVTGTIYAKIDRPSGIINFQKVKDS-- 402 (439)
T ss_pred cchhhhHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHhCCCHHHHHHHHHHHHhccceEEEecCCCceEEEEecccH--
Confidence 68999999999999999999999999999999999999999999999999999999999999999999988775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 014555 395 IYPATLETISNMGKVVDSLFVRSAK 419 (422)
Q Consensus 395 ~~~~l~~~~~~l~~l~~~l~~~~~~ 419 (422)
.+.+++|..++.++++.+ +|...
T Consensus 403 -~~~LneW~~nve~L~~ll-~K~~H 425 (439)
T KOG1498|consen 403 -NEILNEWASNVEKLLGLL-EKVSH 425 (439)
T ss_pred -HHHHHHHHhhHHHHHHHH-HHHHH
Confidence 478999999999999764 44433
No 5
>COG5071 RPN5 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-43 Score=328.75 Aligned_cols=391 Identities=14% Similarity=0.143 Sum_probs=336.2
Q ss_pred HHHHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHH
Q 014555 12 SIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRG 91 (422)
Q Consensus 12 ~~ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~ 91 (422)
+...++...|.+.|++.|+..+++.+..+| .....+.+..|+.+|++.|+|++|+++++.|.+.+|+ .|+.+.-||++
T Consensus 18 ~~~~~l~~~d~~~~le~LL~~EkK~RqasD-~~~~~kvl~~i~dLl~S~~~~~~Lneql~~L~kKhGQ-lk~sI~~MIq~ 95 (439)
T COG5071 18 KSLNNLNTIDIDANLEKLLIFEKKVRQASD-TSTNTKVLIYIADLLFSAGDFQGLNEQLVSLFKKHGQ-LKQSITSMIQH 95 (439)
T ss_pred hhhcchhhcchhhHHHHHHHHHHHHhhhcc-HHHHHHHHHHHHHHHhhcCchhhhhhHHHHHHHHcch-HHHHHHHHHHH
Confidence 344555666789999999999999876653 7788999999999999999999999999999999996 59999999999
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH---hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL---RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l---r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
++++.-.+.+ ...++.+++.+..++ |||+|+ |+|++..|.+++...||..+|+++++.+.+|++++++-+.++.
T Consensus 96 vmEylKg~~d-l~t~i~~ietlr~Vt--EgkIFvEvERariT~~L~~ikee~Gdi~sA~Dilcn~pVETygs~~~Sekv~ 172 (439)
T COG5071 96 VMEYLKGIDD-LKTKINLIETLRTVT--EGKIFVEVERARLTQLLSQIKEEQGDIKSAQDILCNEPVETYGSFDLSEKVA 172 (439)
T ss_pred HHHhccCccc-ccchHhHHHHHHHHh--cCceEEehhHHHHHHHHHHHHHHhcchhHHHHHHhcCchhhccchhHHHHHH
Confidence 9999975553 456788888888876 899999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch---hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh-
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA---QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP- 244 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~---i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~- 244 (422)
++|+|+|+|...+|+.+|-.+..+.++ +....|. ..-.+++.--.+++++|.|-.+++|+.+.+.+-...+++
T Consensus 173 fiLEQ~rL~vl~~Dy~~A~~~~kKI~K---K~Fe~~d~~slKlkyYeL~V~i~Lh~R~Yl~v~~y~~~vY~t~~~~~d~A 249 (439)
T COG5071 173 FILEQVRLFLLRSDYYMASTYTKKINK---KFFEKEDVQSLKLKYYELKVRIGLHDRAYLDVCKYYRAVYDTAVVQEDPA 249 (439)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHH---HHhccccHHHHHHHHHHHhheeecccHHHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999999877655443 3333333 445677777788999999999999999998877766664
Q ss_pred hHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChh------H
Q 014555 245 RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPI------V 318 (422)
Q Consensus 245 ~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~------l 318 (422)
.|..+|..++..++|++..++++++++...+- .+....+...+++++|..+++..|...-..|.+.+..|.| -
T Consensus 250 kwk~VLS~~v~F~iLtpy~neq~dlvhKi~~d-~kl~sl~~~~~lVk~f~vNelmrwp~V~~~y~~~l~~~~faF~~e~~ 328 (439)
T COG5071 250 KWKEVLSNVVCFALLTPYDNEQADLLHKINAD-HKLNSLPLLQQLVKCFIVNELMRWPKVAEIYGSALRSNVFAFNDEKG 328 (439)
T ss_pred cccchhhcceeeEEecccccHHHHHHHHhhhh-hhhccchhhhhHHHHHHHHHHHhhhHHHHHhHHHHHhhhhhhccchh
Confidence 67788777777788998888888777655431 1223456678999999999999999988889988887753 2
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHH
Q 014555 319 HRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPA 398 (422)
Q Consensus 319 ~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~ 398 (422)
..||++|..+|+|||++.+..+||||++.+|+..+++|+.++|..+|.|+..|-++|+|+|+.|+|.|..+... .+.
T Consensus 329 ~~~w~DL~krviEHN~RvI~~yYSrI~~~rl~~lld~~~s~te~~ISdlVN~G~~yaKiNrpa~Ii~FEK~~n~---~~~ 405 (439)
T COG5071 329 EKRWSDLRKRVIEHNIRVIANYYSRIHCSRLGVLLDMSPSETEQFISDLVNKGHFYAKINRPAQIISFEKSQNV---QEQ 405 (439)
T ss_pred hhhHHHHHHHHHHhhHhHHHHHhhhhhHHHHHHHHcCCHHHHHHHHHHHHhcCcEEEEecCccceEEeeccccH---HHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999887664 488
Q ss_pred HHHHHHHHHHHHHHHH
Q 014555 399 TLETISNMGKVVDSLF 414 (422)
Q Consensus 399 l~~~~~~l~~l~~~l~ 414 (422)
+++|..|++.+++.+-
T Consensus 406 lneW~~NV~ellgkle 421 (439)
T COG5071 406 LNEWGSNVTELLGKLE 421 (439)
T ss_pred HHHhcccHHHHHHHHH
Confidence 9999999999998753
No 6
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.6e-33 Score=260.50 Aligned_cols=292 Identities=14% Similarity=0.200 Sum_probs=256.1
Q ss_pred hHHHHHHHHHHHHHHh-cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCC
Q 014555 104 ELQIALCKEMVQWTRA-EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRN 182 (422)
Q Consensus 104 ~~~~~l~~~~i~~~~~-~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n 182 (422)
+.+++-+++.|+.+.+ .|-..+|.- .+++|.+|++.||.+.|++.+......+ ..-.+++|+.+..+|+.+.-+|
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea-~~~kaeYycqigDkena~~~~~~t~~kt---vs~g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREA-MLRKAEYYCQIGDKENALEALRKTYEKT---VSLGHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHhccHHHHHHHHHHHHHHH---hhcccchhhHHHHHHHHHhhcc
Confidence 4567777888887753 467888775 7899999999999999998888766543 3347899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcC
Q 014555 183 LPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQ 262 (422)
Q Consensus 183 ~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~ 262 (422)
..-....+++|..+-..- ++|...++++.+.|++.+..|||+.|+..|.++..+|.+.+......+..|+++|++++..
T Consensus 157 ~~lV~~~iekak~liE~G-gDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Ytv~~g~i~le 235 (393)
T KOG0687|consen 157 HDLVTESIEKAKSLIEEG-GDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYTVITGLIALE 235 (393)
T ss_pred HHHHHHHHHHHHHHHHhC-CChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHHHHHhhheec
Confidence 888888888888776554 4999999999999999999999999999999999999998888899999999999999999
Q ss_pred ccchh-hhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHH-hHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcc
Q 014555 263 ADDVA-GIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRD-FKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEP 340 (422)
Q Consensus 263 ~~el~-~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~-~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~p 340 (422)
|+++. .++.+.+... ..+.++...+++.++..++|..|...|.. ....+..|-++.+|.....+.||.+++-|+.+|
T Consensus 236 R~dlktKVi~~~Evl~-vl~~l~~~~q~l~SLY~C~Y~~Ff~~L~~~~~~~lk~D~~l~~h~~yyvREMR~rvY~QlLES 314 (393)
T KOG0687|consen 236 RVDLKTKVIKCPEVLE-VLHKLPSVSQLLNSLYECDYSDFFNDLAAVEAKQLKDDRYLGPHYRYYVREMRRRVYAQLLES 314 (393)
T ss_pred cchHHhhhcCcHHHHH-HhhcCchHHHHHHHHHhccHHHHHHHHHHHHHHhhccchhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99985 4555554332 23347788999999999999999988844 578899999999999999999999999999999
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHH
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLE 401 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~ 401 (422)
|++++++.||+.||+|++.+++.|+++|.+|+++|+||+++|+|++++|+..+..|+.+++
T Consensus 315 Yrsl~l~~MA~aFgVSVefiDreL~rFI~~grL~ckIDrVnGVVEtNrpD~KN~qyq~vik 375 (393)
T KOG0687|consen 315 YRSLTLESMAKAFGVSVEFIDRELGRFIAAGRLHCKIDRVNGVVETNRPDEKNAQYQAVIK 375 (393)
T ss_pred HHHHHHHHHHHHhCchHHHHHhHHHHhhccCceeeeeecccceeecCCccccchHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999988887654
No 7
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-27 Score=221.59 Aligned_cols=298 Identities=14% Similarity=0.229 Sum_probs=253.8
Q ss_pred hHHHHHHHHHHHHHHh-cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCC
Q 014555 104 ELQIALCKEMVQWTRA-EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRN 182 (422)
Q Consensus 104 ~~~~~l~~~~i~~~~~-~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n 182 (422)
+.+++-+++-|+..+. +|.+.--. .-+++|++|.+.+|.+.+.+++.++... .+....++++.+..+|+.+.-+|
T Consensus 92 eeki~Elde~i~~~eedngE~e~~e-a~~n~aeyY~qi~D~~ng~~~~~~~~~~---a~stg~KiDv~l~kiRlg~~y~d 167 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSE-ADRNIAEYYCQIMDIQNGFEWMRRLMRD---AMSTGLKIDVFLCKIRLGLIYGD 167 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHH-HHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHhcccchhhHHHHHHHHHhhcc
Confidence 4455555555665542 23333322 2569999999999999999988887643 33457899999999999999999
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcC
Q 014555 183 LPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQ 262 (422)
Q Consensus 183 ~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~ 262 (422)
-.-.++.++.+..+-.+- ++|...++++.+.|++.+..|+|++|+..|.++..+|.+.+...+-.+.+|+++|.+++..
T Consensus 168 ~~vV~e~lE~~~~~iEkG-gDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~vrYa~~~Gl~~le 246 (412)
T COG5187 168 RKVVEESLEVADDIIEKG-GDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAVRYAIFCGLLRLE 246 (412)
T ss_pred HHHHHHHHHHHHHHHHhC-CCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHHHHHHHhhhheee
Confidence 999999999888776664 4999999999999999999999999999999999999998888888999999999999999
Q ss_pred ccchh-hhhcccccccc--cCcchHHHHHHHHHHhcCCHH-HHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhh
Q 014555 263 ADDVA-GIISSKAGLQY--VGPELDAMKAVADAHSKRSLK-LFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLI 338 (422)
Q Consensus 263 ~~el~-~ll~~~~~~~~--~~~~i~~~~~L~~af~~~dl~-~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~ 338 (422)
|.++. .|+++++.... ....+..+..+..+...+||. -|...+..+...+..|.|+..|++.+.+.+|.+++-|++
T Consensus 247 R~diktki~dspevl~vi~~~e~l~sl~~l~~SLy~cdY~~~F~~ll~~~~n~L~~d~fl~rh~d~fvREMRrrvYaQlL 326 (412)
T COG5187 247 RRDIKTKILDSPEVLDVIGSSEKLGSLVQLATSLYECDYGGDFMNLLYLFCNSLQDDVFLGRHVDLFVREMRRRVYAQLL 326 (412)
T ss_pred hhhhhhhhcCCHHHHHhccchhhhhhHHHHHHHHHHhccchhhHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99986 47787754433 233456677888999999999 667778888999999999999999999999999999999
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHH
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNM 406 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l 406 (422)
++|+.++++.||+.||+|++.+++-|.++|.+|++++.||+++|+|+.++|++.++.|+.+.+.+..+
T Consensus 327 ESYr~lsl~sMA~tFgVSV~yvdrDLg~FIp~~~LncvIDRvnGvVetnrpdekn~qy~~vVkqGd~l 394 (412)
T COG5187 327 ESYRLLSLESMAQTFGVSVEYVDRDLGEFIPEGRLNCVIDRVNGVVETNRPDEKNQQYSSVVKQGDDL 394 (412)
T ss_pred HHHHHhhHHHHHHHhCccHHHHhhhHHhhCCCCceeeeeecccceEeccCcchhhhhHHHHHhcchHH
Confidence 99999999999999999999999999999999999999999999999999999888888776554433
No 8
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=8.2e-27 Score=220.45 Aligned_cols=312 Identities=15% Similarity=0.161 Sum_probs=249.2
Q ss_pred HHHhhcCC-CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHH----hcccHHHHHHHHHHHHHHHhhhccchhHH
Q 014555 93 IDAVAKIP-GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLM----ESREYTEALTLLTSLVKEVRRLDDKLLLV 167 (422)
Q Consensus 93 l~~~~~~~-~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~----~~g~~~~A~~~l~~l~~e~~~~~~~~~~~ 167 (422)
.++++..| .+.+..++++.+|+.... .|+ + .+.++++.+ +.+|.++|+++++++...+...+.+...+
T Consensus 43 ~~fvd~~~f~~~~~~l~lY~NFvsefe--~kI----N-plslvei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~ 115 (380)
T KOG2908|consen 43 VDFVDDPPFQAGDLLLQLYLNFVSEFE--TKI----N-PLSLVEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVI 115 (380)
T ss_pred HHHHhccccccchHHHHHHHHHHHHHh--hcc----C-hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHH
Confidence 34444332 234667788888887442 221 1 346666554 46699999999999999998888777777
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc-CCCCchhhHHHHHHHHHHhchhhcHHHHHHH--HHHHhhhhhccCCh
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANA-IYVPPAQQGTIDLQSGILHAEEKDYKTAYSY--FFEAFEAFNALEDP 244 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~-i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~--f~ea~~~~~~~~~~ 244 (422)
-+...++|+++..||.+.+|..+...+...++ .+++|.+.+.++..+..||-..+||..+|+. .|-++..-+.+...
T Consensus 116 ~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~s 195 (380)
T KOG2908|consen 116 YILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASYYRHALLYLGCSDIDDLSES 195 (380)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHhccccccccCHH
Confidence 88888999999999999999999999886655 4578889999999999999999999965542 12222222233335
Q ss_pred hHHHHHHHHHHHHHHhcCccch-----hhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHH
Q 014555 245 RAVFSLKYMLLCKIMVSQADDV-----AGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVH 319 (422)
Q Consensus 245 ~~~~~lky~vL~~lL~~~~~el-----~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~ 319 (422)
++.+...-++++++|++..++. ||+|.+. .+++.+|+.+++.||+.||+..|++....+ ..-|.+.
T Consensus 196 e~~~lA~~L~~aALLGe~iyNfGELL~HPilesL-----~gT~~eWL~dll~Afn~Gdl~~f~~l~~~~----~~~p~L~ 266 (380)
T KOG2908|consen 196 EKQDLAFDLSLAALLGENIYNFGELLAHPILESL-----KGTNREWLKDLLIAFNSGDLKRFESLKGVW----GKQPDLA 266 (380)
T ss_pred HHHHHHHHHHHHHHhccccccHHHHHhhHHHHHh-----cCCcHHHHHHHHHHhccCCHHHHHHHHHHh----ccCchHH
Confidence 6667777899999999987774 4555543 467889999999999999999999877654 4589999
Q ss_pred HhHHHHHHHHHHHHHHHhhcc----cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc----
Q 014555 320 RHLSSLYDTLLEQNLCRLIEP----YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK---- 391 (422)
Q Consensus 320 ~~~~~L~~~i~~~~l~~i~~p----Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~---- 391 (422)
.+...|.++|+..+++.+++. -++||++.||+.+.+|.++||.++++.++.|.|.|.|||++|+|.+.|..|
T Consensus 267 ~~e~~L~qKI~LmaLiEi~F~rpa~~R~lsf~~Ia~~tkip~~eVE~LVMKAlslgLikG~Idqv~~~v~~swvqPRvl~ 346 (380)
T KOG2908|consen 267 SNEDFLLQKIRLLALIEITFSRPANERTLSFKEIAEATKIPNKEVELLVMKALSLGLIKGSIDQVEGVVYMSWVQPRVLD 346 (380)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhccccHHHHHHHhCCCHHHHHHHHHHHHhccceeeeecccccEEEEecccccccC
Confidence 999999999999999999863 589999999999999999999999999999999999999999999999665
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014555 392 ---ADAIYPATLETISNMGKVVDSLFVRSAKI 420 (422)
Q Consensus 392 ---~~~~~~~l~~~~~~l~~l~~~l~~~~~~~ 420 (422)
...+-+++..|.+++.++-..+-.+|+.+
T Consensus 347 ~~qI~~Mk~rl~~W~~~v~~me~~ve~~~~~i 378 (380)
T KOG2908|consen 347 RSQIVKMKDRLDEWNKDVKSMEGLVEHRGHEI 378 (380)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34567888899999999888777776653
No 9
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-26 Score=215.94 Aligned_cols=319 Identities=15% Similarity=0.209 Sum_probs=244.6
Q ss_pred hHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH------hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 014555 83 AKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTR------AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKE 156 (422)
Q Consensus 83 ~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~------~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e 156 (422)
..+..+++.+-..++..|+ +.+-++....++..+ ++.-.-+| ..||.+|+..++|..|+..|..+-.+
T Consensus 59 vvsrqllsl~~~~l~~l~~--e~~Kei~~~~l~~iq~rvisfeEqv~~ir----l~LAsiYE~Eq~~~~aaq~L~~I~~~ 132 (399)
T KOG1497|consen 59 VVSRQLLSLFDVELSILED--ELRKEISHFTLEKIQPRVISFEEQVASIR----LHLASIYEKEQNWRDAAQVLVGIPLD 132 (399)
T ss_pred hhHHHHHHHHHHHhccCCH--HHHHHHHHHHHHhcccccccHHHHHHHHH----HHHHHHHHHhhhHHHHHHHHhccCcc
Confidence 3343344444444443333 444445444444332 22222223 39999999999999999999988655
Q ss_pred H-hhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 157 V-RRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 157 ~-~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
+ .+..+-..++..++...|+|+..+|...|..+..++........ ++.++..++.|.+++....|+|-+|+..||+..
T Consensus 133 tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~-Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 133 TGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS-NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 33345678899999999999999999999999999887655444 889999999999999999999999999999874
Q ss_pred hhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccC---cchHHHHHHHHHH-----hcCCHHHHHHHHHH
Q 014555 236 EAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVG---PELDAMKAVADAH-----SKRSLKLFETALRD 307 (422)
Q Consensus 236 ~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~---~~i~~~~~L~~af-----~~~dl~~f~~~l~~ 307 (422)
. +...+...+.++|+.++.|.+|+..+|....++.. .|++ ++++.+--+.+.| ...++..|+..|..
T Consensus 212 ~-~ki~~e~~~~~aL~~a~~CtlLA~~gpqrsr~Lat----lfkder~~~l~~y~ileKmyl~riI~k~el~ef~~~L~p 286 (399)
T KOG1497|consen 212 Q-RKIVDESERLEALKKALQCTLLASAGPQRSRMLAT----LFKDERCQKLPAYGILEKMYLERIIRKEELQEFEAFLQP 286 (399)
T ss_pred H-HHhcchHHHHHHHHHhHhheeecCCChHHHHHHHH----HhcCcccccccchHHHHHHHHHHHhcchhHHHHHHHhcc
Confidence 3 22245568999999999999999988887665432 2333 4455555555554 67789999999999
Q ss_pred hHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 308 FKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 308 ~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
|+..-..|+- ..+.+.++||||+.+++-|.+||++.++..|++|++.+|+..++||..|+++|.|||.+|+|+|.
T Consensus 287 HQka~~~dgs-----sil~ra~~EhNlls~Skly~nisf~~Lg~ll~i~~ekaekiaa~MI~qeRmng~IDQ~egiihFe 361 (399)
T KOG1497|consen 287 HQKAHTMDGS-----SILDRAVIEHNLLSASKLYNNISFEELGALLKIDAEKAEKIAAQMITQERMNGSIDQIEGIIHFE 361 (399)
T ss_pred hhhhcccCcc-----hhhhhHHHHHhHHHHHHHHHhccHHHHHHHhCCCHHHHHHHHHHHHhHHHhccchHhhcceEeec
Confidence 9877666663 56899999999999999999999999999999999999999999999999999999999999997
Q ss_pred cCCchhhHHHHHH-HHHHHHHHHHHHHHHHhhh
Q 014555 388 EDPKADAIYPATL-ETISNMGKVVDSLFVRSAK 419 (422)
Q Consensus 388 ~~~~~~~~~~~l~-~~~~~l~~l~~~l~~~~~~ 419 (422)
+..+ -..|++-+ .....++++.+.+-.++..
T Consensus 362 ~~e~-l~~wdkqi~sl~~qvNki~~~i~~~~s~ 393 (399)
T KOG1497|consen 362 DREE-LPQWDKQIQSLCNQVNKILDKISHYGSE 393 (399)
T ss_pred chhh-hhhhhHHHHHHHHHHHHHHHHHHHhCcc
Confidence 7332 23454444 4788888888887666543
No 10
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.95 E-value=6.2e-26 Score=218.87 Aligned_cols=293 Identities=17% Similarity=0.268 Sum_probs=247.6
Q ss_pred hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc-C
Q 014555 122 RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA-I 200 (422)
Q Consensus 122 r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~-i 200 (422)
|-.+|.- ...|+.+|.+.|+++.|++.+......|.. ..+.+.+++.-+++....+||.+.-.+..+|...... .
T Consensus 146 KEsiRra-~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs---~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~ 221 (466)
T KOG0686|consen 146 KESIRRA-LEDLGDHYLDCGQLDNALRCYSRARDYCTS---AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANE 221 (466)
T ss_pred hHHHHHH-HHHHHHHHHHhccHHHHHhhhhhhhhhhcc---hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhh
Confidence 3444433 568999999999999999999998877754 3678999999999999999999998888888766311 1
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH-hhh--hhccCChhHHHHHHHHHHHHHHhcCccchh-hhhcccccc
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA-FEA--FNALEDPRAVFSLKYMLLCKIMVSQADDVA-GIISSKAGL 276 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea-~~~--~~~~~~~~~~~~lky~vL~~lL~~~~~el~-~ll~~~~~~ 276 (422)
...+.+.+.++.+.|..++..++|+.|+.+|..+ +.. |+.+-.|..+ ..|..||+|.++.+.++. .+..+..+.
T Consensus 222 ~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv--~iYggLcALAtfdr~~Lk~~vi~n~~Fk 299 (466)
T KOG0686|consen 222 NLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDV--AIYGGLCALATFDRQDLKLNVIKNESFK 299 (466)
T ss_pred hHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhh--HHHHhhHhhccCCHHHHHHHHHcchhhh
Confidence 1134556779999999999999999999999987 222 2233334444 459999999999988875 555666555
Q ss_pred cccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCC
Q 014555 277 QYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP 356 (422)
Q Consensus 277 ~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~ 356 (422)
.|.+ -.|.+++++..|+++.+..+..+|.+.++.+..|+++++|++.|+..||.+.++++..||+++.++.||..||.+
T Consensus 300 ~fle-l~Pqlr~il~~fy~sky~~cl~~L~~~k~~llLD~yLaphVd~Ly~~IR~r~llqy~~py~s~~m~~mA~af~~s 378 (466)
T KOG0686|consen 300 LFLE-LEPQLREILFKFYSSKYASCLELLREIKPRLLLDMYLAPHVDNLYSLIRNRALLQYLSPYSSADMSKMAEAFNTS 378 (466)
T ss_pred hHHh-cChHHHHHHHHHhhhhHHHHHHHHHHhccceeechhcchhHHHHHHHHHHhhHHHhcCccccchHHHHHHHhccc
Confidence 5421 235679999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 014555 357 IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKIM 421 (422)
Q Consensus 357 ~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~~~~~~~ 421 (422)
+...|..|.++|.+|+|+|+||+.+++|.+.+.++++..|++.+.+++.-..-...++.|+..++
T Consensus 379 v~~le~~l~~LI~~~~i~~rIDs~~ki~~~~~~~~en~~fe~~~~~~~~~~~~~kal~lr~~~~~ 443 (466)
T KOG0686|consen 379 VAILESELLELILEGKISGRIDSHNKILYARDADSENATFERVLPMGKRSQLEAKALLLRAALLK 443 (466)
T ss_pred HHHHHHHHHHHHHccchheeeccccceeeecccccccchhhhcchhhHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988888888888876553
No 11
>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins. This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.
Probab=99.81 E-value=3.4e-19 Score=146.43 Aligned_cols=105 Identities=25% Similarity=0.388 Sum_probs=99.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHH
Q 014555 284 DAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKK 363 (422)
Q Consensus 284 ~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~ 363 (422)
||+.+|+++|.++++..|...++.+...+..|+++..|++.+.++++.+++.+++++|++|++++||+.++++.+++|..
T Consensus 1 ~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~~~~vE~~ 80 (105)
T PF01399_consen 1 PPYSELLRAFRSGDLQEFEEFLEKHSESLFKDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLSEEEVESI 80 (105)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHTCHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCCHHHHHHH
T ss_pred CHHHHHHHHHHhCCHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccchHHHHHH
Confidence 68899999999999999999999997788999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhhcCCceeeeecCCCEEEEec
Q 014555 364 LSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 364 l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
+++||.+|.|.|+|||++|+|+|.+
T Consensus 81 l~~~I~~~~i~~~ID~~~~~v~~~k 105 (105)
T PF01399_consen 81 LIDLISNGLIKAKIDQVNGVVVFSK 105 (105)
T ss_dssp HHHHHHTTSSEEEEETTTTEEEE-S
T ss_pred HHHHHHCCCEEEEEECCCCEEEecC
Confidence 9999999999999999999999964
No 12
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.3e-17 Score=161.31 Aligned_cols=203 Identities=17% Similarity=0.228 Sum_probs=164.0
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCC---CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh-ccCChhHHHH
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYV---PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN-ALEDPRAVFS 249 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~---~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~-~~~~~~~~~~ 249 (422)
.|.|+.-+-+..|..+.. ...+. ...-.|+|-.|.|++.+.+.||.+|..+|..|...-. +.......++
T Consensus 216 Lr~yL~n~lydqa~~lvs------K~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v 289 (493)
T KOG2581|consen 216 LRNYLHNKLYDQADKLVS------KSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQV 289 (493)
T ss_pred HHHHhhhHHHHHHHHHhh------cccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHH
Confidence 356666655555533322 22221 1236789999999999999999999999999976544 3334577888
Q ss_pred HHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHH
Q 014555 250 LKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTL 329 (422)
Q Consensus 250 lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i 329 (422)
-|.+++..+|.+..|+..- |..+.. ...+.+|..|.+|...+|+.+|.+.+++|++.|..|+.. ..+-.|+++|
T Consensus 290 ~k~~ivv~ll~geiPers~-F~Qp~~----~ksL~~Yf~Lt~AVr~gdlkkF~~~leq~k~~f~~D~ty-~LivRLR~NV 363 (493)
T KOG2581|consen 290 NKLMIVVELLLGEIPERSV-FRQPGM----RKSLRPYFKLTQAVRLGDLKKFNETLEQFKDKFQADGTY-TLIVRLRHNV 363 (493)
T ss_pred HHHHHHHHHHcCCCcchhh-hcCccH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhCCcc-hHHHHHHHHH
Confidence 8999999999999888643 443211 235778999999999999999999999999999999954 3467899999
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCC-hHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
+.-.|+.|.-.||||++.+||+.|+++ ++++|-.+++.|.||.|.|+||..+|++...+
T Consensus 364 IkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVakAIRDGvIea~Id~~~g~m~skE 423 (493)
T KOG2581|consen 364 IKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVAKAIRDGVIEAKIDHEDGFMQSKE 423 (493)
T ss_pred HHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHHHHHHhccceeeeccccCceehhh
Confidence 999999999999999999999999997 56699999999999999999999999887654
No 13
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.58 E-value=1.4e-12 Score=125.14 Aligned_cols=216 Identities=19% Similarity=0.263 Sum_probs=159.9
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHH---HhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh-hc
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAAR---TAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF-NA 240 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~---~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~-~~ 240 (422)
.+.-++..-.++++..+++.-.-.++..-. ..+++-. ||+..-.|..++|.++...++|++|. +||+.+-+- ..
T Consensus 138 qlT~~H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~-~~k~fL~Y~yYgg~iciglk~fe~Al-~~~e~~v~~Pa~ 215 (422)
T KOG2582|consen 138 QLTSIHADLLQLCLEAKDYASVLPYLDDDIVEICKANPHL-DPKYFLLYLYYGGMICIGLKRFERAL-YLLEICVTTPAM 215 (422)
T ss_pred chhhhHHHHHHHHHHhhcccccCCccchhHHHHhccCCCC-CHHHHHHHHHhcceeeeccccHHHHH-HHHHHHHhcchh
Confidence 566666666778888888765543332110 1112223 78888888899999999999999998 566654433 22
Q ss_pred cCChhHHHHH-HHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChh--
Q 014555 241 LEDPRAVFSL-KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPI-- 317 (422)
Q Consensus 241 ~~~~~~~~~l-ky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~-- 317 (422)
.-.....++. ||++++-|+.+...++.. -.++.+.++..+-.++|.++.++|.++.-.+...++..|...|..|..
T Consensus 216 ~vs~~hlEaYkkylLvsLI~~GK~~ql~k-~ts~~~~r~~K~ms~pY~ef~~~Y~~~~~~eLr~lVk~~~~rF~kDnnt~ 294 (422)
T KOG2582|consen 216 AVSHIHLEAYKKYLLVSLILTGKVFQLPK-NTSQNAGRFFKPMSNPYHEFLNVYLKDSSTELRTLVKKHSERFTKDNNTG 294 (422)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCceeeccc-cchhhhHHhcccCCchHHHHHHHHhcCCcHHHHHHHHHHHHHHhhcCcHH
Confidence 2222334444 588888888887655543 233444444445566899999999999999999999999999999984
Q ss_pred -HHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCC-hHHHHHHHHhhhhcCCceeeeecCCCEEEEecCC
Q 014555 318 -VHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390 (422)
Q Consensus 318 -l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~ 390 (422)
....+..++ .|||.++.+.|+++++++||++..+. .++||+++.+||.+|+|.+.|| |.|.|.+.+
T Consensus 295 l~k~av~sl~----k~nI~rltktF~sLsL~dIA~~vQLa~~qevek~Ilqmie~~~i~a~iN---G~v~f~~n~ 362 (422)
T KOG2582|consen 295 LAKQAVSSLY----KKNIQRLTKTFLSLSLSDIASRVQLASAQEVEKYILQMIEDGEIFASIN---GMVFFTDNP 362 (422)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhHHHHHHHHHhcchHHHHHHHHHHhccCceEEEec---ceEEEecCc
Confidence 445555555 79999999999999999999988874 7999999999999999999999 999997643
No 14
>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15. Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.
Probab=99.53 E-value=3.3e-14 Score=113.31 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCch
Q 014555 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKA 392 (422)
Q Consensus 320 ~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~ 392 (422)
+|++.+.++++.+++.++++||++|++++||+.+++|.+++|..+++||.+|.|.|+|||.+|+|+|.+.+++
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00088 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999988775
No 15
>smart00753 PAM PCI/PINT associated module.
Probab=99.53 E-value=3.3e-14 Score=113.31 Aligned_cols=73 Identities=29% Similarity=0.398 Sum_probs=70.0
Q ss_pred HhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCch
Q 014555 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKA 392 (422)
Q Consensus 320 ~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~ 392 (422)
+|++.+.++++.+++.++++||++|++++||+.+++|.+++|..+++||.+|.|.|+|||.+|+|+|.+.+++
T Consensus 1 ~~~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~~~~vE~~i~~~i~~~~l~~~ID~~~~~v~~~~~~~r 73 (88)
T smart00753 1 QLVERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLSVPEVEKLVSKAIRDGEISAKIDQVNGIVEFEEVDPR 73 (88)
T ss_pred ChHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEEcCcCCEEEECCCchh
Confidence 3678999999999999999999999999999999999999999999999999999999999999999988775
No 16
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=99.48 E-value=9.4e-13 Score=118.68 Aligned_cols=142 Identities=13% Similarity=0.140 Sum_probs=122.8
Q ss_pred chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 121 KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 121 ~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
++.-+|.- ...++++|.+.||+++|++.+......|. ....++++++..+|+++..+|+..+...++++.......
T Consensus 31 ~kesir~~-~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~---~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~ 106 (177)
T PF10602_consen 31 GKESIRMA-LEDLADHYCKIGDLEEALKAYSRARDYCT---SPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKG 106 (177)
T ss_pred chHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHhhhcC---CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcc
Confidence 44555443 56999999999999999999999876654 347899999999999999999999999999999988775
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc---cCChhHHHHHHHHHHHHHHhcCccchh
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA---LEDPRAVFSLKYMLLCKIMVSQADDVA 267 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~---~~~~~~~~~lky~vL~~lL~~~~~el~ 267 (422)
. +|...+.++.+.|++++..|+|+.|+..|.++..+|.. .+-....++..|.+||++++.+|+++.
T Consensus 107 ~-d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~~~~~~~el~s~~d~a~Y~~l~aLat~~R~eLk 175 (177)
T PF10602_consen 107 G-DWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTFTSLQYTELISYNDFAIYGGLCALATLDRSELK 175 (177)
T ss_pred c-hHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCCCCCchhhhcCHHHHHHHHHHHHHHhCCHHHHc
Confidence 4 89999999999999999999999999999999888865 344566778889999999999988763
No 17
>KOG1076 consensus Translation initiation factor 3, subunit c (eIF-3c) [Translation, ribosomal structure and biogenesis]
Probab=99.16 E-value=6.4e-08 Score=100.02 Aligned_cols=259 Identities=16% Similarity=0.214 Sum_probs=163.9
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH--HhhccCCCCchhhHHHH---HHHHHHhchhhc
Q 014555 149 LLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAAR--TAANAIYVPPAQQGTID---LQSGILHAEEKD 223 (422)
Q Consensus 149 ~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~--~~~~~i~~~~~i~a~i~---~~~g~~~~~~~d 223 (422)
++..|-+.+++.++.......+|+-+-.+-..+||-.||.++-.+. .+... .++.+|.-+. .+-|+-.+..|-
T Consensus 468 lmd~Lc~~iY~~~d~r~rtRAmLchIYh~AL~d~f~~ARDlLLMSHlQdnI~h--~D~stQIL~NRtmvQLGLCAFR~Gm 545 (843)
T KOG1076|consen 468 LMDGLCKYIYKNDDDRLRTRAMLCHIYHHALHDNFYTARDLLLMSHLQDNIQH--ADISTQILFNRTMVQLGLCAFRQGM 545 (843)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhc--cChhHHHHHHHHHHHHHHHHHHccc
Confidence 4556666666666666666677766655666789999999876543 11111 1334443333 445555566677
Q ss_pred HHHHHHHHHHHhhhhh---------------cc-C-----------------ChhHHHHHHHHHHHHHHhcCcc------
Q 014555 224 YKTAYSYFFEAFEAFN---------------AL-E-----------------DPRAVFSLKYMLLCKIMVSQAD------ 264 (422)
Q Consensus 224 y~~A~~~f~ea~~~~~---------------~~-~-----------------~~~~~~~lky~vL~~lL~~~~~------ 264 (422)
.++|...+.+...+=. +- . +-+.+.| ..+.|+||..=++
T Consensus 546 i~EaH~~L~dl~st~r~kELLgQgv~~~~~he~t~eQe~~eR~rQlPyHmHINLELlEc--VyLtcaMLlEIP~MAA~~~ 623 (843)
T KOG1076|consen 546 IKEAHQCLSDLQSTGRVKELLGQGVLQRRQHEKTAEQEKIERRRQLPYHMHINLELLEC--VYLTCAMLLEIPYMAAHES 623 (843)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhhhhhhhccChhhHHHHHhhcCchhhhccHHHHHH--HHHHHHHHHhhhHHhhhhh
Confidence 7777777765542211 00 0 0133344 2456887753211
Q ss_pred -----ch----hhhhcccccccccCcc--h-HHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHH
Q 014555 265 -----DV----AGIISSKAGLQYVGPE--L-DAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQ 332 (422)
Q Consensus 265 -----el----~~ll~~~~~~~~~~~~--i-~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~ 332 (422)
-+ +..+...+...|.+|. + +-...-.+|...|+...+.+.+-.+.+....=|.-..-.+-|.++|.+-
T Consensus 624 d~Rrr~iSk~frr~Le~serqsf~gPPEn~RehVvaAsKAm~~Gnw~~c~~fi~nn~KvW~Lfpn~d~V~~Ml~~rIqEE 703 (843)
T KOG1076|consen 624 DARRRMISKSFRRQLEHSERQSFTGPPENTREHVVAASKAMQKGNWQKCFEFIVNNIKVWDLFPNADTVLDMLTERIQEE 703 (843)
T ss_pred hhhcccccHHHHHHHHHHhhccccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHhhhhHHHhcccHHHHHHHHHHHHHHH
Confidence 11 1112222223344443 1 1223456889999999999854443332221222223346688999999
Q ss_pred HHHHhhcc----cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHH
Q 014555 333 NLCRLIEP----YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGK 408 (422)
Q Consensus 333 ~l~~i~~p----Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~ 408 (422)
.|+-++.. |++||+..||++|+||+..|-..|++||....|.|++|||.++|+|.+ .+++.+..-+.....++..
T Consensus 704 sLRTYLftYss~Y~SvSl~~LA~mFdLp~~~VhsIiSkmiineEl~AslDqpt~~iv~hr-vE~srlq~La~qL~eKl~~ 782 (843)
T KOG1076|consen 704 SLRTYLFTYSSVYDSVSLAKLADMFDLPEPKVHSIISKMIINEELHASLDQPTQCIVMHR-VEPSRLQSLAVQLSEKLAI 782 (843)
T ss_pred HHHHHHHHhhhhhhhccHHHHHHHhCCCchhHHHHHHHHHHHHHhhhccCCCcceEEEee-ccchHHHHHHHHHHHHHHH
Confidence 99988875 689999999999999999999999999999999999999999999988 4455555666667777766
Q ss_pred HHHH
Q 014555 409 VVDS 412 (422)
Q Consensus 409 l~~~ 412 (422)
+.+.
T Consensus 783 L~E~ 786 (843)
T KOG1076|consen 783 LAEN 786 (843)
T ss_pred HHHh
Confidence 6654
No 18
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=2.5e-07 Score=88.14 Aligned_cols=153 Identities=11% Similarity=0.181 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHhcCc--cchhh---hhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhH
Q 014555 248 FSLKYMLLCKIMVSQA--DDVAG---IISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHL 322 (422)
Q Consensus 248 ~~lky~vL~~lL~~~~--~el~~---ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~ 322 (422)
..++|+..+.+-+.++ +.+.+ ++ +++...|++|-.+. |.-.|.+-|+..-...|.+.+..+.+|+|+....
T Consensus 253 hllRYLatAvvtnk~~rr~~lkdlvkVI-qqE~ysYkDPiteF---l~clyvn~DFdgAq~kl~eCeeVl~nDfFLva~l 328 (432)
T KOG2758|consen 253 HLLRYLATAVVTNKRRRRNRLKDLVKVI-QQESYSYKDPITEF---LECLYVNYDFDGAQKKLRECEEVLVNDFFLVALL 328 (432)
T ss_pred HHHHHHHHHhhcchHhhHHHHHHHHHHH-HHhccccCCcHHHH---HHHHhhccchHHHHHHHHHHHHHHhcchhHHHHH
Confidence 4678888877766332 22222 22 34455677775433 3445788899999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHH
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLET 402 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~ 402 (422)
+++.+.-|....--+.+-+++|+++-+|..|+++++++|..+..+|.+.+|+|+||...|.|++..+... .|+++.+-
T Consensus 329 ~~F~E~ARl~ifEtfCRIHqcIti~mLA~kLnm~~eeaErwivnlIr~~rl~AkidSklg~Vvmg~~~~s--~~qQ~ie~ 406 (432)
T KOG2758|consen 329 DEFLENARLLIFETFCRIHQCITIDMLADKLNMDPEEAERWIVNLIRTARLDAKIDSKLGHVVMGHPTVS--PHQQLIEK 406 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHheeHHHHHHHhcCCHHHHHHHHHHHHHHhhhhhhhccccCceeecCCCCC--HHHHHHHh
Confidence 8888777777777777778999999999999999999999999999999999999999999999766543 58888775
Q ss_pred HHHH
Q 014555 403 ISNM 406 (422)
Q Consensus 403 ~~~l 406 (422)
.+.+
T Consensus 407 tksL 410 (432)
T KOG2758|consen 407 TKSL 410 (432)
T ss_pred cccc
Confidence 5544
No 19
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=99.06 E-value=2.1e-07 Score=88.94 Aligned_cols=313 Identities=15% Similarity=0.144 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCCh--hHHHHHHHHHHHHHHhcchhHHh
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTS--ELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~--~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
-+...+..|.+.+.|+ +.-.+..+.+..-..+.-+...+|..+++.+.+-|+.. ...++++-++..-..+. .-+|
T Consensus 47 ~ii~~c~v~~k~~ekd-le~vlnsi~sLi~~~~~e~~e~~v~a~~ekva~q~n~~~~~l~L~vLsnLfn~~d~~--~~aR 123 (378)
T KOG2753|consen 47 MIIEACDVLAKIPEKD-LECVLNSIVSLIKNAPPEKVEEMVKAICEKVAKQPNDKTASLRLQVLSNLFNGVDKP--TPAR 123 (378)
T ss_pred HHHHHhHHhhcCCcch-HHHHHHHHHHHHHhCCHHHhHHHHHHHHHHHhcCccCCCcccHHHHHHHHHhccCCC--chHH
Confidence 3345566788888887 66667777776666677788889999999888777642 35666666665543222 1133
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
-.+=..+.++-.+.+-+..-..-+..+...++.-. -+.+.-+.++...
T Consensus 124 ~~Vy~~lv~la~~~~~~~~i~~~lk~~~~~lkew~-------------------~~vedqrel~r~v------------- 171 (378)
T KOG2753|consen 124 YQVYMSLVTLAASCKLIEYIVPNLKQLDDWLKEWN-------------------ISVEDQRELLRAV------------- 171 (378)
T ss_pred HHHHHHHHHHHhhcceeeeecccHHHHHHHHHhCC-------------------CCHHHHHHHHHHH-------------
Confidence 33333333333332222111111111111111100 0111111111100
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHH
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAM 286 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~ 286 (422)
.......+.-..+.+-|.+-..+|.+-+...+..-..-.|.-++-.++.-...++++-+-. .+- +=+.+
T Consensus 172 --------~~al~~~k~~~~s~kvmt~lLgtyt~dnas~AredA~rcV~~av~dP~~F~fD~Ll~L~pV-~qL--E~d~i 240 (378)
T KOG2753|consen 172 --------HKALKDNKSVDESSKVMTELLGTYTEDNASEAREDAMRCVVEAVKDPKIFLFDHLLTLPPV-KQL--EGDLI 240 (378)
T ss_pred --------HHHHHhcchhhhHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHcCCceeccchhccCchH-HHh--ccchH
Confidence 0000011112234444445555665433234444444455556555543322222221110 010 11236
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHh
Q 014555 287 KAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQ 366 (422)
Q Consensus 287 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~ 366 (422)
.+|++.|..+.+..|-+..+.+...+..-++.. +....+||.--+..+..+-..|+++.|++.|++..+|||-.+.+
T Consensus 241 ~qLL~IF~s~~L~aYveF~~~N~~Fvqs~gl~~---E~~~~KMRLLTlm~LA~es~eisy~~l~k~LqI~edeVE~fVId 317 (378)
T KOG2753|consen 241 HQLLKIFVSGKLDAYVEFVAANSGFVQSQGLVH---EQNMAKMRLLTLMSLAEESNEISYDTLAKELQINEDEVELFVID 317 (378)
T ss_pred HHHHHHHHhcchHHHHHHHHhChHHHHHhcccH---HHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCHHHHHHHHHH
Confidence 889999999999999888888776665555543 36888899999999999999999999999999999999999999
Q ss_pred hhhcCCceeeeecCCCEEEEecCCch-------hhHHHHHHHHH-HHHHHHH
Q 014555 367 MILDKKFAGTLDQGVGCLIIFEDPKA-------DAIYPATLETI-SNMGKVV 410 (422)
Q Consensus 367 mI~~g~i~gkIDq~~g~v~~~~~~~~-------~~~~~~l~~~~-~~l~~l~ 410 (422)
.|..|.+.|+|||.+++|++.....+ ...++.+..|+ ++++.+-
T Consensus 318 aI~aklV~~kidq~~~~viVs~~~hR~FG~~qW~~L~~kL~aw~k~~~stv~ 369 (378)
T KOG2753|consen 318 AIRAKLVEGKIDQMNRTVIVSSSTHRTFGKQQWQQLRDKLAAWGKQNLSTVR 369 (378)
T ss_pred HHHHHHHHhhHHhhcceEEeehhhhhhcccHHHHHHHHHHHHHHhhhhHHHH
Confidence 99999999999999999999864332 23456667795 4444443
No 20
>COG5600 Transcription-associated recombination protein [DNA replication, recombination, and repair]
Probab=98.58 E-value=3.1e-05 Score=75.63 Aligned_cols=211 Identities=16% Similarity=0.162 Sum_probs=142.6
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhh-ccCCC-CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHH
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAA-NAIYV-PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSL 250 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~-~~i~~-~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~l 250 (422)
.-.+|+..+++.-++..+....... ..++. +-+-.-.++.+-|++|+.+.+|..|+-.|-+||..-..........++
T Consensus 183 L~~iY~Rl~~~~l~~n~lka~~~vs~~Di~~~~~sq~v~f~YYLG~~~l~~en~heA~~~L~~aFl~c~~l~~~n~~rIl 262 (413)
T COG5600 183 LFQIYLRLGRFKLCENFLKASKEVSMPDISEYQKSQVVVFHYYLGIYYLLNENFHEAFLHLNEAFLQCPWLITRNRKRIL 262 (413)
T ss_pred HHHHHHHhccHHHHHHHHHhcccccccccchhhhcceeehhhHHHHHHHHHHhHHHHHHHHHHHHHhChhhhhcchheeh
Confidence 3457889999888876665433311 11210 122334678899999999999999999999998644332222334455
Q ss_pred HHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHH
Q 014555 251 KYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLL 330 (422)
Q Consensus 251 ky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~ 330 (422)
-|++-.+++.+.-+...+++++ |. ....+.-|+++...|++..|...++++...|.+-+.. --+...+.-|.
T Consensus 263 ~~~ipt~Llv~~~~Ptk~~L~r-----~~--~~s~~~~LvkavrsGni~~~~~~l~~ner~~~~~~l~-ltl~~~~~~V~ 334 (413)
T COG5600 263 PYYIPTSLLVNKFPPTKDLLER-----FK--RCSVYSPLVKAVRSGNIEDFDLALSRNERKFAKRGLY-LTLLAHYPLVC 334 (413)
T ss_pred hHHhhHHHHhCCCCCchHHHHh-----cc--ccchhHHHHHHHHcCCHHHHHHHHHHhHHHHHHcchH-HHHHhhccHHH
Confidence 6888878877764433344432 22 2455677999999999999999999988665555532 22334455666
Q ss_pred HHHHHHhhc----cccc--ccchhHHHHhCC-----ChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc
Q 014555 331 EQNLCRLIE----PYSR--VEIAHIAELIEL-----PIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK 391 (422)
Q Consensus 331 ~~~l~~i~~----pYs~--I~l~~la~~l~l-----~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~ 391 (422)
-+|+.+=+- --++ +++-.++..+.. +.++||-.++.||..|.+.|.|-+...+|+|..+++
T Consensus 335 ~RNL~rk~w~~~~~qsrlp~sil~~~~qls~~dn~~~~~~VEciL~tlI~~G~lrgYis~s~~~vV~sk~~p 406 (413)
T COG5600 335 FRNLFRKIWRLHGKQSRLPLSILLIVLQLSAIDNFHSFKEVECILVTLIGLGLLRGYISHSRRTVVFSKKDP 406 (413)
T ss_pred HHHHHHHHHhhccccccCcHHHHHHHHHccCCCcccChHHHHHHHHHHHhhhhhhheecccceEEEEecCCC
Confidence 677765221 1245 445555555543 268999999999999999999999999999988765
No 21
>KOG2688 consensus Transcription-associated recombination protein - Thp1p [Cell cycle control, cell division, chromosome partitioning]
Probab=98.46 E-value=1.1e-05 Score=80.07 Aligned_cols=209 Identities=19% Similarity=0.245 Sum_probs=135.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHh-hcc-CCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHH
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTA-ANA-IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFS 249 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~-~~~-i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~ 249 (422)
..-++|+..+.+.-++......... ++. -+ +-.-.-.++.+-|++++.+.||..|..++-+||..-...--.....+
T Consensus 168 ~lf~Iyfri~~~~L~k~l~ra~~~~~~~~~~~-~l~~~v~y~YylGr~a~~~~d~~~A~~~L~~af~~cp~~~~~n~~~i 246 (394)
T KOG2688|consen 168 QLFQIYFRIEKLLLCKNLIRAFDQSGSDISDF-PLAQLVVYHYYLGRYAMFESDFLNAFLQLNEAFRLCPDLLLKNKRLI 246 (394)
T ss_pred HHHHHHHHHhhHHHhHHHHHHhhccccchhhc-ccccceeeeeeeeeehhhhhhHHHHHHHHHHHHHhCcHHHHhhhhhH
Confidence 3345677777666555554332222 111 11 11112235566789999999999999999999874432211234457
Q ss_pred HHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHH---HHH
Q 014555 250 LKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLS---SLY 326 (422)
Q Consensus 250 lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~---~L~ 326 (422)
+.|++-++++.+..|.. ++++. | ....+..|+++...|++..|...+++++..|..-+++---.. ..+
T Consensus 247 liylip~~~llg~~Pt~-~lL~~-----~---~~~~~~~lv~aVr~Gnl~~f~~al~~~E~~f~~~gi~l~l~~l~lv~y 317 (394)
T KOG2688|consen 247 LIYLIPTGLLLGRIPTK-ELLDF-----Y---TLDKYSPLVQAVRSGNLRLFDLALADNERFFIRSGIYLTLEKLPLVVY 317 (394)
T ss_pred HHHHhHHHHHhccCcch-hhHhH-----h---hHHhHHHHHHHHHhccHHHHHHHHhhhHHHHHHhccHHHhhhhhHHHH
Confidence 88999999988774432 22321 1 155678899999999999999999999866655553321111 122
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHhCC------ChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc
Q 014555 327 DTLLEQNLCRLIEPYSRVEIAHIAELIEL------PIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK 391 (422)
Q Consensus 327 ~~i~~~~l~~i~~pYs~I~l~~la~~l~l------~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~ 391 (422)
+++..+.+. +..-=++++++++-..+.. +.+++|-.|+.+|..|+|+|.|++....+++...++
T Consensus 318 rnL~kkv~~-~~~~~~~lpls~~~~al~~~~~~~~~~deveciLa~lI~~G~ikgYish~~~~~V~sK~~p 387 (394)
T KOG2688|consen 318 RNLFKKVIQ-LWGKTSQLPLSRFLTALQFSGVTDVDLDEVECILANLIDLGRIKGYISHQLQTLVFSKKDP 387 (394)
T ss_pred HHHHHHHHH-HhCCCCCCCHHHHHHHHhhcCCCCCchhhHHHHHHhhhhhccccchhchhhheEEEecCCC
Confidence 222222221 1112277888887777654 469999999999999999999999999999987654
No 22
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=98.23 E-value=0.00061 Score=66.07 Aligned_cols=241 Identities=12% Similarity=0.082 Sum_probs=135.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI-PKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~-~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
-..+.+.+..+...|+|+.-.+.+.......... .+..+++........+.+. + ...-++.++..++.....|+.--
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~-~~~Ai~~~~~A~~~y~~~G~~~~ 112 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D-PDEAIECYEKAIEIYREAGRFSQ 112 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T-HHHHHHHHHHHHHHHHHCT-HHH
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C-HHHHHHHHHHHHHHHHhcCcHHH
Confidence 3455566666666777766665555444433211 2233444444444444433 2 23335566666665445555444
Q ss_pred hhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 126 RQRVEARLAALLMES-REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 126 r~~l~~~La~~~~~~-g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
=+++..++|.+|+.. |++++|++.++.-..-....+....-.+++..-+.++...+++.+|-..|++.-......+ -.
T Consensus 113 aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~-l~ 191 (282)
T PF14938_consen 113 AAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN-LL 191 (282)
T ss_dssp HHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC-TT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc-cc
Confidence 455678999999999 9999999999998766655555566778888889999999999999999887644321111 00
Q ss_pred hhhH-HHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcch
Q 014555 205 AQQG-TIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPEL 283 (422)
Q Consensus 205 ~i~a-~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i 283 (422)
+..+ .+....++.|+..+|+..|...|-. | . ++.|=|. ..++.
T Consensus 192 ~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~------------------~------~-----~~~~~F~-------~s~E~ 235 (282)
T PF14938_consen 192 KYSAKEYFLKAILCHLAMGDYVAARKALER------------------Y------C-----SQDPSFA-------SSREY 235 (282)
T ss_dssp GHHHHHHHHHHHHHHHHTT-HHHHHHHHHH------------------H------G-----TTSTTST-------TSHHH
T ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHH------------------H------H-----hhCCCCC-------CcHHH
Confidence 1111 1222233333333333322211100 0 0 0100011 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHH
Q 014555 284 DAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLY 326 (422)
Q Consensus 284 ~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~ 326 (422)
..+..|+.||.++|...|...+..|...-..|++.-.-+-.+.
T Consensus 236 ~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k 278 (282)
T PF14938_consen 236 KFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK 278 (282)
T ss_dssp HHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 6788999999999999999999999888888997544333333
No 23
>KOG2072 consensus Translation initiation factor 3, subunit a (eIF-3a) [Translation, ribosomal structure and biogenesis]
Probab=97.79 E-value=0.082 Score=56.79 Aligned_cols=76 Identities=17% Similarity=0.217 Sum_probs=69.7
Q ss_pred hhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhC-CChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 312 LEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIE-LPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 312 l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~-l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+...|...+++..|.+.++.+.+.++++-|.+|++++|-++.- ++.-++|+.+++....+-+..+||+..++|.|.
T Consensus 416 ls~~~~~~QYI~sLq~v~~~RllqQvSqiY~sIs~~~l~~La~F~~~~~lEk~~v~a~k~~~v~iriDH~~~~v~Fg 492 (988)
T KOG2072|consen 416 LSESPDKSQYIPSLQDVIILRLLQQVSQIYESISFERLYKLAPFFSAFELEKLLVEAAKHNDVSIRIDHESNSVSFG 492 (988)
T ss_pred HHcCCCccccchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhcCHHHHHHHHHHHHhccceeEEeccccceeeec
Confidence 4455666889999999999999999999999999999999865 588999999999999999999999999999997
No 24
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.74 E-value=0.0097 Score=59.72 Aligned_cols=60 Identities=18% Similarity=0.185 Sum_probs=39.0
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
-+..+. ..+.++|++.+..+++....+. .....++..++..+...|+++.....+.....
T Consensus 75 la~~~~~~g~~~~A~~~~~~~l~~~~~~~---~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 75 LGNLFRRRGEVDRAIRIHQNLLSRPDLTR---EQRLLALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHcCcHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 344443 3457888888888877643222 12345677788888888888887777766654
No 25
>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8. In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.
Probab=97.70 E-value=0.00016 Score=62.85 Aligned_cols=84 Identities=23% Similarity=0.310 Sum_probs=66.3
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHH
Q 014555 280 GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDH 359 (422)
Q Consensus 280 ~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~e 359 (422)
+|++..+..|.+++.++++.+|-..++.+ .-.+.+...+..|.+.||+..+.-+...|++|+++.+++.||++.++
T Consensus 38 ~~~i~~i~~l~~~L~~~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~iR~~i~~~i~~aY~sIs~~~la~~Lg~~~~e 113 (143)
T PF10075_consen 38 DPEIKAIWSLGQALWEGDYSKFWQALRSN----PWSPDYKPFVPGFEDTIRERIAHLISKAYSSISLSDLAEMLGLSEEE 113 (143)
T ss_dssp -TTHHHHHHHHHHHHTT-HHHHHHHS-TT--------HHHHTSTTHHHHHHHHHHHHHHHH-SEE-HHHHHHHTTS-HHH
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHhCCCHHH
Confidence 58899999999999999999999766543 11346777888999999999999999999999999999999999888
Q ss_pred HHHHHHhh
Q 014555 360 VEKKLSQM 367 (422)
Q Consensus 360 vE~~l~~m 367 (422)
+++.+.+-
T Consensus 114 l~~~~~~~ 121 (143)
T PF10075_consen 114 LEKFIKSR 121 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 88777764
No 26
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=97.67 E-value=0.078 Score=53.13 Aligned_cols=196 Identities=14% Similarity=0.105 Sum_probs=123.9
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhh
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVA 97 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~ 97 (422)
...++++|++.|.+.++..+.. ..+...++.+++..|+++...+.+..+... +..+..........+...+.
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPET-------VELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYL 118 (389)
T ss_pred hcCChHHHHHHHHHHHhcCccc-------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHH
Confidence 4457899999999999875422 246678899999999999998888776652 11222222222333333333
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLH 177 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~ 177 (422)
...+ .+.-.+.++..++. ....... ...++.++...|++++|.+.+..+...-.. ........++...+.++
T Consensus 119 ~~g~-~~~A~~~~~~~l~~----~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~la~~~ 190 (389)
T PRK11788 119 KAGL-LDRAEELFLQLVDE----GDFAEGA--LQQLLEIYQQEKDWQKAIDVAERLEKLGGD-SLRVEIAHFYCELAQQA 190 (389)
T ss_pred HCCC-HHHHHHHHHHHHcC----CcchHHH--HHHHHHHHHHhchHHHHHHHHHHHHHhcCC-cchHHHHHHHHHHHHHH
Confidence 2222 22224444444432 1111112 347899999999999999998887643211 11122344555667788
Q ss_pred HhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 178 FSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 178 ~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...|++..|...+.++..... ... .....-|..+...++|..|...|-++..
T Consensus 191 ~~~~~~~~A~~~~~~al~~~p-----~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~ 242 (389)
T PRK11788 191 LARGDLDAARALLKKALAADP-----QCV--RASILLGDLALAQGDYAAAIEALERVEE 242 (389)
T ss_pred HhCCCHHHHHHHHHHHHhHCc-----CCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 899999999999998865421 111 2234467778889999999998888764
No 27
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.55 E-value=0.014 Score=56.65 Aligned_cols=194 Identities=13% Similarity=0.131 Sum_probs=125.3
Q ss_pred HhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHH
Q 014555 16 AKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDA 95 (422)
Q Consensus 16 ~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~ 95 (422)
-|...+|+.|++.|.++.+.+. .++.+=..++.++++.|..|.....=+.|.. .+..+-..-.-.+.++-.-
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~-------~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDP-------ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCc-------hhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHHH
Confidence 3456679999999999998543 5677888999999999999987765555543 2334433333334444333
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 014555 96 VAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESK 175 (422)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~ 175 (422)
+... +=.++--.++..+.+. +..---+ -..|..+|-...+|++|.+.-.++.+- .+-+-+.+...+|-+-+.
T Consensus 117 ym~a-Gl~DRAE~~f~~L~de----~efa~~A--lqqLl~IYQ~treW~KAId~A~~L~k~-~~q~~~~eIAqfyCELAq 188 (389)
T COG2956 117 YMAA-GLLDRAEDIFNQLVDE----GEFAEGA--LQQLLNIYQATREWEKAIDVAERLVKL-GGQTYRVEIAQFYCELAQ 188 (389)
T ss_pred HHHh-hhhhHHHHHHHHHhcc----hhhhHHH--HHHHHHHHHHhhHHHHHHHHHHHHHHc-CCccchhHHHHHHHHHHH
Confidence 3211 1112233444444441 1100111 348999999999999998876665432 111224556678888888
Q ss_pred HHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHH
Q 014555 176 LHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 176 ~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ 232 (422)
-++..+|+++|+..+.+|.....+. +.+. ..-|.+++..|+|..|...+-
T Consensus 189 ~~~~~~~~d~A~~~l~kAlqa~~~c-----vRAs--i~lG~v~~~~g~y~~AV~~~e 238 (389)
T COG2956 189 QALASSDVDRARELLKKALQADKKC-----VRAS--IILGRVELAKGDYQKAVEALE 238 (389)
T ss_pred HHhhhhhHHHHHHHHHHHHhhCccc-----eehh--hhhhHHHHhccchHHHHHHHH
Confidence 8899999999999999987764332 2222 237888999999998886543
No 28
>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.
Probab=97.11 E-value=0.0044 Score=56.83 Aligned_cols=108 Identities=15% Similarity=0.221 Sum_probs=72.0
Q ss_pred ChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhH
Q 014555 243 DPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHL 322 (422)
Q Consensus 243 ~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~ 322 (422)
.+.......|.+|..+..+..++++..+.........+|.+.....+..++.+|++..|....+. ...|.+..++
T Consensus 95 ~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~-----~~~~~l~~~l 169 (204)
T PF03399_consen 95 SPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRS-----KSAPYLFACL 169 (204)
T ss_dssp -TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT------TTS-HHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-----cCCChHHHHH
Confidence 35667777888888877776566654333221011256778778899999999999999987622 2445444444
Q ss_pred H-HHHHHHHHHHHHHhhccccc-ccchhHHHHhCC
Q 014555 323 S-SLYDTLLEQNLCRLIEPYSR-VEIAHIAELIEL 355 (422)
Q Consensus 323 ~-~L~~~i~~~~l~~i~~pYs~-I~l~~la~~l~l 355 (422)
- .+...||.+++..+.+.|.+ |+++.+++.|+.
T Consensus 170 ~~~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F 204 (204)
T PF03399_consen 170 MERFFNRIRLRALQSISKAYRSSIPLSFLAELLGF 204 (204)
T ss_dssp HGGGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence 4 48899999999999999999 999999999874
No 29
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.10 E-value=0.086 Score=51.05 Aligned_cols=181 Identities=13% Similarity=0.092 Sum_probs=115.5
Q ss_pred HHHHhhcC-ChHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccch-hHHHHHH
Q 014555 13 IAQAKEAS-NPSDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK-AKTAKIV 89 (422)
Q Consensus 13 ~ak~~~~~-~~~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k-~~~~k~v 89 (422)
.|..++.. +.++|.+.|..--+-. ..++ -...-+++.+.+.++.+. +++...+.+..-...+....+ ..+++..
T Consensus 41 Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~--~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~ 117 (282)
T PF14938_consen 41 AANCFKLAKDWEKAAEAYEKAADCYEKLGD--KFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCL 117 (282)
T ss_dssp HHHHHHHTT-CHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 34444433 4678888777754321 1111 224456777777777665 888888888877776533333 4556777
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-cchhHHH
Q 014555 90 RGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD-DKLLLVD 168 (422)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-~~~~~~e 168 (422)
..+-+.+.+..+..+.-++.++...++...++.......+-.++|.++...|+|.+|+++++++........ .+...=+
T Consensus 118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~ 197 (282)
T PF14938_consen 118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE 197 (282)
T ss_dssp HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence 888887765522345568889999998776666555555577999999999999999999998865432111 1111224
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++..+-+++..||...|+..+++....
T Consensus 198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 198 YFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555566888999999999888766444
No 30
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=97.08 E-value=0.095 Score=50.25 Aligned_cols=223 Identities=16% Similarity=0.187 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~ 128 (422)
.+.+=+..+.+.|++..-.++...+..-+..-........+.++++.+...|.+.+.+.++++..+.|++..+.-+=--.
T Consensus 12 LL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~ 91 (260)
T PF04190_consen 12 LLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPE 91 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HH
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHH
Confidence 44444566677777766555555544433221122334456777777777776656688999999999942211111223
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
|...+|..|...|++.+|...+-- + ++......+.+.. .....++-...
T Consensus 92 LH~~~a~~~~~e~~~~~A~~Hfl~------~-~~~~~~~~~~ll~--~~~~~~~~~e~---------------------- 140 (260)
T PF04190_consen 92 LHHLLAEKLWKEGNYYEAERHFLL------G-TDPSAFAYVMLLE--EWSTKGYPSEA---------------------- 140 (260)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHT------S--HHHHHHHHHHHH--HHHHHTSS--H----------------------
T ss_pred HHHHHHHHHHhhccHHHHHHHHHh------c-CChhHHHHHHHHH--HHHHhcCCcch----------------------
Confidence 456899999999988877543321 1 1111111111100 11111111111
Q ss_pred HHHHHHH-HHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHH
Q 014555 209 TIDLQSG-ILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMK 287 (422)
Q Consensus 209 ~i~~~~g-~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~ 287 (422)
.+....+ +.+++-++...|.. +++.|. ..+... .|.+.. .+. ..++..|-+..+.
T Consensus 141 dlfi~RaVL~yL~l~n~~~A~~-~~~~f~-------------------~~~~~~-~p~~~~--~~~-~~~~~~PllnF~~ 196 (260)
T PF04190_consen 141 DLFIARAVLQYLCLGNLRDANE-LFDTFT-------------------SKLIES-HPKLEN--SDI-EYPPSYPLLNFLQ 196 (260)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHH-HHHHHH-------------------HHHHHH----EEE--EEE-EEESS-HHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHH-HHHHHH-------------------HHHhcc-Ccchhc--ccc-CCCCCCchHHHHH
Confidence 1111111 12334444444432 222211 111111 111111 000 0112345566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHH
Q 014555 288 AVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLY 326 (422)
Q Consensus 288 ~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~ 326 (422)
-|+.+...++...|..+.+.|++.+..||.+...++.+-
T Consensus 197 lLl~t~e~~~~~~F~~L~~~Y~~~L~rd~~~~~~L~~IG 235 (260)
T PF04190_consen 197 LLLLTCERDNLPLFKKLCEKYKPSLKRDPSFKEYLDKIG 235 (260)
T ss_dssp HHHHHHHHT-HHHHHHHHHHTHH---HHHHTHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHhCccccccHHHHHHHHHHH
Confidence 789999999999999999999999999997766555554
No 31
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=97.07 E-value=0.0092 Score=60.19 Aligned_cols=145 Identities=10% Similarity=0.055 Sum_probs=103.7
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchH
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELD 284 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~ 284 (422)
.....+++--+++.+..||..+--++--....=|.+.......+++.|-+|.-|++.+.+++..++.+...-...++.+.
T Consensus 345 eFTveVYEtHARIALEkGD~~EfNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll~~lt~E~ked~~V~ 424 (540)
T KOG1861|consen 345 EFTVEVYETHARIALEKGDLEEFNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLLRDLTEEDKEDEAVA 424 (540)
T ss_pred ceeeeeehhhhHHHHhcCCHHHHHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHHHhccHhhccCHHHH
Confidence 33345566677777777776655554444444444433335788889999999999998888876655422112356666
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhH-HHHHHHHHHHHHHHhhcccc-cccchhHHHHhCCC
Q 014555 285 AMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHL-SSLYDTLLEQNLCRLIEPYS-RVEIAHIAELIELP 356 (422)
Q Consensus 285 ~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~-~~L~~~i~~~~l~~i~~pYs-~I~l~~la~~l~l~ 356 (422)
--.++..|..-|+|..|..+- ..-|-+..|+ +.+.++-|..+|.-+++.|+ +|++++|++.|.+.
T Consensus 425 hAL~vR~A~~~GNY~kFFrLY-------~~AP~M~~yLmdlF~erER~~Al~ii~KsyrP~i~~~fi~~~laf~ 491 (540)
T KOG1861|consen 425 HALEVRSAVTLGNYHKFFRLY-------LTAPNMSGYLMDLFLERERKKALTIICKSYRPTITVDFIASELAFD 491 (540)
T ss_pred HHHHHHHHHHhccHHHHHHHH-------hhcccchhHHHHHHHHHHHHHHHHHHHHHcCCCccHHHHhhhhhhc
Confidence 667899999999999999742 3344444444 45788999999999999999 99999999988875
No 32
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.03 E-value=0.0088 Score=51.79 Aligned_cols=94 Identities=21% Similarity=0.167 Sum_probs=73.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
.+.+|+.+...|++++|.+.++.+.... .+....-...+..+++++..|++..|...+.. +. ++...+.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-------~~-~~~~~~~ 119 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILLQQGQYDEALATLQQ-------IP-DEAFKAL 119 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-------cc-CcchHHH
Confidence 4589999999999999999999988643 23333334455568899999999999777643 22 4456777
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
.....|.++...|++..|...|-.+
T Consensus 120 ~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 120 AAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 8899999999999999999888765
No 33
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.97 E-value=0.61 Score=51.20 Aligned_cols=47 Identities=15% Similarity=0.085 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhc
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLR 74 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 74 (422)
+.++|++.|...++..+.. ..++..++.++...|++++..+.+..+.
T Consensus 480 ~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 480 DLAKAREAFEKALSIEPDF-------FPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred CHHHHHHHHHHHHhhCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 5677777777776654322 1244455666666666666555555444
No 34
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=96.96 E-value=0.13 Score=47.80 Aligned_cols=176 Identities=13% Similarity=0.065 Sum_probs=105.7
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....+..+. ..+.+.|++.|..+++..+.+ .+...+...++..+++.|+|+...+.+..+....+.-+...-+ .
T Consensus 36 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~----~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a-~ 110 (235)
T TIGR03302 36 LYEEAKEALDSGDYTEAIKYFEALESRYPFS----PYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA-Y 110 (235)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc----hhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH-H
Confidence 444555554 456899999999999876533 2667788999999999999999999999887766432221000 0
Q ss_pred HHHHHHHhhcCC------CChhHHHHHHHHHHHHHHhcc---h-----hHHhh---HHHHHHHHHHHhcccHHHHHHHHH
Q 014555 89 VRGIIDAVAKIP------GTSELQIALCKEMVQWTRAEK---R-----TFLRQ---RVEARLAALLMESREYTEALTLLT 151 (422)
Q Consensus 89 v~~~l~~~~~~~------~~~~~~~~l~~~~i~~~~~~~---r-----~~lr~---~l~~~La~~~~~~g~~~~A~~~l~ 151 (422)
...-.-++.... +..+.-++.++.++..-.... + .+... .-...++.+|+..|++.+|...+.
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~ 190 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFE 190 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 011111111000 000001222222222100000 0 00000 013478899999999999999999
Q ss_pred HHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 014555 152 SLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAA 193 (422)
Q Consensus 152 ~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a 193 (422)
..+..... .....+......+.+...|++.+|..++...
T Consensus 191 ~al~~~p~---~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 191 TVVENYPD---TPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHCCC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 98765332 2345666677788999999999998876654
No 35
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.94 E-value=0.11 Score=49.17 Aligned_cols=174 Identities=14% Similarity=0.110 Sum_probs=108.2
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....|.... +.+.++|++.|..++...+.+ .+..++...++..+++.++++.-...+..+.+.++.=+++.-+--
T Consensus 35 ~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s----~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 35 IYATAQQKLQDGNWKQAITQLEALDNRYPFG----PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC----hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 335566654 457899999999999876543 378889999999999999999999988888887765444322111
Q ss_pred HHHH---------HHHhhcCCCCh-hH---H--HHHHHHHHHHHH-------hcch-hHHhhHH---HHHHHHHHHhccc
Q 014555 89 VRGI---------IDAVAKIPGTS-EL---Q--IALCKEMVQWTR-------AEKR-TFLRQRV---EARLAALLMESRE 142 (422)
Q Consensus 89 v~~~---------l~~~~~~~~~~-~~---~--~~l~~~~i~~~~-------~~~r-~~lr~~l---~~~La~~~~~~g~ 142 (422)
+.-+ ++.+..++.+. +. + ++-++++++.-- ...| ..+|.+| +...|++|.+.|.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~ 190 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGA 190 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 1111 11222222110 00 0 223333333210 0111 1221111 6688999999999
Q ss_pred HHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHH
Q 014555 143 YTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAAL 190 (422)
Q Consensus 143 ~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l 190 (422)
|..|+.-++.++..-..+ ...-|......+.|..+|....|+...
T Consensus 191 y~AA~~r~~~v~~~Yp~t---~~~~eal~~l~~ay~~lg~~~~a~~~~ 235 (243)
T PRK10866 191 YVAVVNRVEQMLRDYPDT---QATRDALPLMENAYRQLQLNAQADKVA 235 (243)
T ss_pred hHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 999999999988764433 334445555567888999988887654
No 36
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=96.93 E-value=0.097 Score=53.31 Aligned_cols=187 Identities=14% Similarity=0.102 Sum_probs=112.4
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHH----HHHHH
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIV----RGIID 94 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v----~~~l~ 94 (422)
..+++.|++.+..+.+..+... .++..++.++...|+|+...+++..+.+... .+.......- ..++.
T Consensus 166 ~g~~~~Al~~l~~~~~~~P~~~-------~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~-~~~~~~~~l~~~a~~~l~~ 237 (398)
T PRK10747 166 RNENHAARHGVDKLLEVAPRHP-------EVLRLAEQAYIRTGAWSSLLDILPSMAKAHV-GDEEHRAMLEQQAWIGLMD 237 (398)
T ss_pred CCCHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 4468888888888887765432 3677788899999999999999999887554 2333332211 11122
Q ss_pred HhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHH
Q 014555 95 AVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLES 174 (422)
Q Consensus 95 ~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~ 174 (422)
.....++. +.-.++.+.+-... +.. ..+...+|..+...|+.++|.+.+.+.++. ..++ .++.++
T Consensus 238 ~~~~~~~~-~~l~~~w~~lp~~~----~~~--~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~--~l~~l~---- 302 (398)
T PRK10747 238 QAMADQGS-EGLKRWWKNQSRKT----RHQ--VALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDE--RLVLLI---- 302 (398)
T ss_pred HHHHhcCH-HHHHHHHHhCCHHH----hCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCH--HHHHHH----
Confidence 22211221 11111111111111 111 112458899999999999999999877652 1122 222222
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 175 KLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 175 ~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..+..++..++...++ .....-+.+ ..+..+-|.++...++|..|..+|-.+..
T Consensus 303 -~~l~~~~~~~al~~~e---~~lk~~P~~----~~l~l~lgrl~~~~~~~~~A~~~le~al~ 356 (398)
T PRK10747 303 -PRLKTNNPEQLEKVLR---QQIKQHGDT----PLLWSTLGQLLMKHGEWQEASLAFRAALK 356 (398)
T ss_pred -hhccCCChHHHHHHHH---HHHhhCCCC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 2334578777755544 333333333 34567899999999999999999988865
No 37
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=96.81 E-value=0.074 Score=54.34 Aligned_cols=202 Identities=12% Similarity=0.086 Sum_probs=114.2
Q ss_pred HHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHH-HH
Q 014555 14 AQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIV-RG 91 (422)
Q Consensus 14 ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v-~~ 91 (422)
|+-.. ..+.+.|++.|..+.+..+.+. .++..++.++.+.|+|+...+.+..+.+.-. .+......+- .-
T Consensus 160 a~l~l~~~~~~~Al~~l~~l~~~~P~~~-------~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~-~~~~~~~~l~~~a 231 (409)
T TIGR00540 160 TRILLAQNELHAARHGVDKLLEMAPRHK-------EVLKLAEEAYIRSGAWQALDDIIDNMAKAGL-FDDEEFADLEQKA 231 (409)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 44433 3457888888888888765432 3677888899999999999988888886421 1222221111 11
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
-...+.+... +.-.+.+....+......|- ..++...++..+...|++++|.+.+.+.++... ++...... +
T Consensus 232 ~~~~l~~~~~--~~~~~~L~~~~~~~p~~~~~--~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~p--d~~~~~~~--~ 303 (409)
T TIGR00540 232 EIGLLDEAMA--DEGIDGLLNWWKNQPRHRRH--NIALKIALAEHLIDCDDHDSAQEIIFDGLKKLG--DDRAISLP--L 303 (409)
T ss_pred HHHHHHHHHH--hcCHHHHHHHHHHCCHHHhC--CHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCC--CcccchhH--H
Confidence 1111211000 00012222222211100000 123345889999999999999999988876432 22221111 1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHH--HHhh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF--EAFE 236 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~--ea~~ 236 (422)
...-..+..+|..++...++++.+. .+.+|. +.+...-|.++...++|.+|..+|- .++.
T Consensus 304 l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~--~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~ 365 (409)
T TIGR00540 304 CLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPK--CCINRALGQLLMKHGEFIEAADAFKNVAACK 365 (409)
T ss_pred HHHhhhcCCCChHHHHHHHHHHHHh---CCCChh--HHHHHHHHHHHHHcccHHHHHHHHHHhHHhh
Confidence 1112233457777777777666543 232442 4566678899999999999998766 3544
No 38
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.78 E-value=0.15 Score=54.93 Aligned_cols=193 Identities=8% Similarity=-0.031 Sum_probs=111.8
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
..++++|++.|...+...+.. ..+...++.++...|+++...+.+.......+.-+.... ..-..+..
T Consensus 344 ~g~~~eA~~~~~kal~l~P~~-------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~-----~lg~~~~~ 411 (615)
T TIGR00990 344 KGKHLEALADLSKSIELDPRV-------TQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYY-----HRAQLHFI 411 (615)
T ss_pred cCCHHHHHHHHHHHHHcCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHH
Confidence 457899999999988865432 235667888889999999988888776654332221111 11111111
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
. +..+.-+..++..++.-. +-.+. ...|+.++...|++++|...+...+... +. ..+++.....++.
T Consensus 412 ~-g~~~~A~~~~~kal~l~P--~~~~~----~~~la~~~~~~g~~~eA~~~~~~al~~~----P~--~~~~~~~lg~~~~ 478 (615)
T TIGR00990 412 K-GEFAQAGKDYQKSIDLDP--DFIFS----HIQLGVTQYKEGSIASSMATFRRCKKNF----PE--APDVYNYYGELLL 478 (615)
T ss_pred c-CCHHHHHHHHHHHHHcCc--cCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC--ChHHHHHHHHHHH
Confidence 1 212223445555554321 11222 2377888888888888888888776431 11 1233444466778
Q ss_pred hhCCHHHHHHHHHHHHHhhccCC-CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 179 SLRNLPKAKAALTAARTAANAIY-VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~~~i~-~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
..|++.+|...+.+|..+..... ....+... ....+.++...++|..|...|-.++..
T Consensus 479 ~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l-~~~a~~~~~~~~~~~eA~~~~~kAl~l 537 (615)
T TIGR00990 479 DQNKFDEAIEKFDTAIELEKETKPMYMNVLPL-INKALALFQWKQDFIEAENLCEKALII 537 (615)
T ss_pred HccCHHHHHHHHHHHHhcCCccccccccHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 88888888888888877764321 01111111 112233333457888888877776554
No 39
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=96.76 E-value=0.05 Score=55.07 Aligned_cols=180 Identities=14% Similarity=0.192 Sum_probs=103.2
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhccCC-CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc------CChh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAANAIY-VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL------EDPR 245 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~~~i~-~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~------~~~~ 245 (422)
-.|++..+||+..|-..++-..-...+++ .-|.-+.....+-|-.|+.-|+|.+|-+.|-.++...... .++.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~~~~q 207 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQRSYQ 207 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccch
Confidence 46788888888777555442211111111 0112234456778999999999999999998875433221 1111
Q ss_pred -------HHHHHHHHHHHHHHhcCcc--chhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhc--
Q 014555 246 -------AVFSLKYMLLCKIMVSQAD--DVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEE-- 314 (422)
Q Consensus 246 -------~~~~lky~vL~~lL~~~~~--el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~-- 314 (422)
.-+...-+.+|..|++.+- .++..+..+ |. +=......+|+..|.+....-.+-|..
T Consensus 208 ~d~i~K~~eqMyaLlAic~~l~p~~lde~i~~~lkek----y~--------ek~~kmq~gd~~~f~elF~~acPKFIsp~ 275 (404)
T PF10255_consen 208 YDQINKKNEQMYALLAICLSLCPQRLDESISSQLKEK----YG--------EKMEKMQRGDEEAFEELFSFACPKFISPV 275 (404)
T ss_pred hhHHHhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH----HH--------HHHHHHHccCHHHHHHHHHhhCCCccCCC
Confidence 1122223445555555421 122211111 21 112234667888888877654433221
Q ss_pred --------------ChhHHHhHHHHHH----HHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHH
Q 014555 315 --------------DPIVHRHLSSLYD----TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLS 365 (422)
Q Consensus 315 --------------D~~l~~~~~~L~~----~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~ 365 (422)
||. ..+++.+.+ ......|+.+++-|++|+++.+|..++++++++-..|.
T Consensus 276 ~pp~~~~~~~~~~~e~~-~~Ql~~Fl~eV~~q~~l~~lRSyLKLYtti~l~KLA~fl~vd~~~lr~~Ll 343 (404)
T PF10255_consen 276 SPPDYDGPSQNKNKEPY-RRQLKLFLDEVKQQQKLPTLRSYLKLYTTIPLEKLASFLDVDEEELRSQLL 343 (404)
T ss_pred CCCCcccccchhhhhHH-HHHHHHHHHHHHHhhhhhHHHHHHHhhcCCCHHHHHHHcCCCHHHHHHHHH
Confidence 343 334444444 44556888999999999999999999999886655543
No 40
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=96.70 E-value=0.22 Score=53.63 Aligned_cols=188 Identities=10% Similarity=0.059 Sum_probs=121.4
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+.++|++.|...++...... ..-.++..++.+++..|+++.....+.......+..+.... ....-+.. .
T Consensus 309 ~y~~A~~~~~~al~~~~~~~----~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~----~la~~~~~-~- 378 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGE----KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYI----KRASMNLE-L- 378 (615)
T ss_pred hHHHHHHHHHHHHhcCCCCh----hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH----HHHHHHHH-C-
Confidence 46789999998887542111 22346678889999999999999888877764443322222 11111111 1
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
+..+.-+..++..++...+.... -..++.++...|++++|...++..+.. ++. .+..+.....++...
T Consensus 379 g~~~eA~~~~~~al~~~p~~~~~------~~~lg~~~~~~g~~~~A~~~~~kal~l----~P~--~~~~~~~la~~~~~~ 446 (615)
T TIGR00990 379 GDPDKAEEDFDKALKLNSEDPDI------YYHRAQLHFIKGEFAQAGKDYQKSIDL----DPD--FIFSHIQLGVTQYKE 446 (615)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHc----Ccc--CHHHHHHHHHHHHHC
Confidence 11233355555555532122222 337888999999999999998887642 222 234455567788999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 181 ~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|++..|...+.++.... + .. ......-|.++...|+|..|...|-.+...
T Consensus 447 g~~~eA~~~~~~al~~~---P---~~-~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 447 GSIASSMATFRRCKKNF---P---EA-PDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred CCHHHHHHHHHHHHHhC---C---CC-hHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 99999999998886642 1 11 223345688888999999999999888754
No 41
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=96.69 E-value=1.4 Score=48.45 Aligned_cols=58 Identities=16% Similarity=0.088 Sum_probs=40.3
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF 77 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 77 (422)
-+..+. ..++++|++.+...++..+.+. .+...++.++...|+++...+.+..+....
T Consensus 573 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 631 (899)
T TIGR02917 573 LAQYYLGKGQLKKALAILNEAADAAPDSP-------EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ 631 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 344443 3468899999998887654332 255677888888899888888877776543
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=96.62 E-value=0.23 Score=48.35 Aligned_cols=167 Identities=11% Similarity=0.141 Sum_probs=109.2
Q ss_pred HHHHHhhcCC-hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHH
Q 014555 12 SIAQAKEASN-PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVR 90 (422)
Q Consensus 12 ~~ak~~~~~~-~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~ 90 (422)
+-|+.++..+ .+.|.+.|..+++... -.+.|+.++..+|-+.++|++..+.=..+.+.-++ .+.-.+-+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-------fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAq 181 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-------FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQ 181 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHH
Confidence 3466666666 5888888888876322 34668888889998889998888777766653332 22222223
Q ss_pred HHHHHhhcC-CCC-hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 91 GIIDAVAKI-PGT-SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 91 ~~l~~~~~~-~~~-~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
-.++.-... +.+ .+..+.++.... +.++.-+|+ ++.|++++...|+|+.|.+.+..+... +..++-+
T Consensus 182 fyCELAq~~~~~~~~d~A~~~l~kAl----qa~~~cvRA--si~lG~v~~~~g~y~~AV~~~e~v~eQ-----n~~yl~e 250 (389)
T COG2956 182 FYCELAQQALASSDVDRARELLKKAL----QADKKCVRA--SIILGRVELAKGDYQKAVEALERVLEQ-----NPEYLSE 250 (389)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHH----hhCccceeh--hhhhhHHHHhccchHHHHHHHHHHHHh-----ChHHHHH
Confidence 333322221 111 122233333333 345677788 679999999999999999999988643 3445555
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
+.-.-...|..+|........+.++......
T Consensus 251 vl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g 281 (389)
T COG2956 251 VLEMLYECYAQLGKPAEGLNFLRRAMETNTG 281 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHccCC
Confidence 5555567888999999998888877655433
No 43
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.60 E-value=0.51 Score=42.39 Aligned_cols=181 Identities=12% Similarity=0.031 Sum_probs=90.7
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.+.++|++.|...++..+.. ..+...++.++...|+++.-.+.+.......+.-+. ....+-..+...
T Consensus 45 ~~~~~A~~~~~~~l~~~p~~-------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~~~ 112 (234)
T TIGR02521 45 GDLEVAKENLDKALEHDPDD-------YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD-----VLNNYGTFLCQQ 112 (234)
T ss_pred CCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHc
Confidence 35778888887776654322 235556777788888887777666655543322111 111111111111
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
+..+.-.+.+...+....... .......++..+...|++++|...+.+.+... +. ..+.+....+++..
T Consensus 113 -g~~~~A~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~~ 181 (234)
T TIGR02521 113 -GKYEQAMQQFEQAIEDPLYPQ----PARSLENAGLCALKAGDFDKAEKYLTRALQID----PQ--RPESLLELAELYYL 181 (234)
T ss_pred -ccHHHHHHHHHHHHhcccccc----chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----cC--ChHHHHHHHHHHHH
Confidence 111222333333333110000 01113356777777777777777777665321 11 12334445667777
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHH
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSY 230 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~ 230 (422)
.|++.+|...+.++.... +.++.. ....+.++...+++..|..+
T Consensus 182 ~~~~~~A~~~~~~~~~~~---~~~~~~----~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 182 RGQYKDARAYLERYQQTY---NQTAES----LWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred cCCHHHHHHHHHHHHHhC---CCCHHH----HHHHHHHHHHHhhHHHHHHH
Confidence 777777777777665541 111111 12345555566666666543
No 44
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=96.57 E-value=0.33 Score=43.68 Aligned_cols=171 Identities=11% Similarity=-0.028 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchh
Q 014555 44 RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRT 123 (422)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~ 123 (422)
.....+...++..++..|+++...+.+.......+. ....- ..+-..+.. .+..+.-.+.+...++........
T Consensus 28 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~--~~la~~~~~-~~~~~~A~~~~~~al~~~~~~~~~ 101 (234)
T TIGR02521 28 NKAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPD---DYLAY--LALALYYQQ-LGELEKAEDSFRRALTLNPNNGDV 101 (234)
T ss_pred CcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc---cHHHH--HHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCHHH
Confidence 355678889999999999999998888877653322 11111 111111111 121233355555555543222211
Q ss_pred HHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCC
Q 014555 124 FLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVP 203 (422)
Q Consensus 124 ~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~ 203 (422)
...++.++...|++++|.+.+...+.... .......+.....++...|++.+|...+.++...... +
T Consensus 102 ------~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~ 168 (234)
T TIGR02521 102 ------LNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ---R 168 (234)
T ss_pred ------HHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---C
Confidence 34788899999999999999888764211 1112233344567888999999999999887665221 1
Q ss_pred chhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 204 PAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 204 ~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
......-|.++...++|..|...|-++...
T Consensus 169 ----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 198 (234)
T TIGR02521 169 ----PESLLELAELYYLRGQYKDARAYLERYQQT 198 (234)
T ss_pred ----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 122345677788899999999887776554
No 45
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=96.52 E-value=0.27 Score=42.34 Aligned_cols=122 Identities=20% Similarity=0.173 Sum_probs=76.9
Q ss_pred HcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHH
Q 014555 59 QENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLM 138 (422)
Q Consensus 59 ~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~ 138 (422)
..++++.+.+.+..+....+.-+-+..+.+. -.-..+. .+..+.=...++.++.... .--++.-..++||.+++
T Consensus 23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~-lA~~~~~--~g~~~~A~~~l~~~~~~~~---d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQ-LAKAAYE--QGDYDEAKAALEKALANAP---DPELKPLARLRLARILL 96 (145)
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHH-HHHHHHH--CCCHHHHHHHHHHHHhhCC---CHHHHHHHHHHHHHHHH
Confidence 5788888888788777766543223333222 1112222 1222333566666666431 11222223559999999
Q ss_pred hcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 014555 139 ESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAA 193 (422)
Q Consensus 139 ~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a 193 (422)
+.|+|++|++.|+.+. +....-.+......+++..|++.+|+..|+.|
T Consensus 97 ~~~~~d~Al~~L~~~~-------~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 97 QQGQYDEALATLQQIP-------DEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HcCCHHHHHHHHHhcc-------CcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 9999999999886632 23334445666788999999999999999876
No 46
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.45 E-value=0.73 Score=46.80 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=92.5
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGI 216 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~ 216 (422)
+...|..++|++..-+++.-+. ..+++....+.+|-...|...|-..|..+..+ |+.+|.+...+ |-
T Consensus 534 ~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~aqaie~~~q~~sl---ip~dp~ilskl----~d 600 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPAQAIELLMQANSL---IPNDPAILSKL----AD 600 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc---CCCCHHHHHHH----HH
Confidence 5678899999988877754332 24566666788899999999998888776443 55577766543 55
Q ss_pred HhchhhcHHHHHHHHHHHhhhhhcc-CChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHH-h
Q 014555 217 LHAEEKDYKTAYSYFFEAFEAFNAL-EDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAH-S 294 (422)
Q Consensus 217 ~~~~~~dy~~A~~~f~ea~~~~~~~-~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af-~ 294 (422)
+|..+||-..|++++|++++.|.+. +..+|+.+ |.+=...--.. ++- |... ...+.....|-..+..|| +
T Consensus 601 lydqegdksqafq~~ydsyryfp~nie~iewl~a--yyidtqf~eka---i~y-~eka--aliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 601 LYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAA--YYIDTQFSEKA---INY-FEKA--ALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HhhcccchhhhhhhhhhcccccCcchHHHHHHHH--HHHhhHHHHHH---HHH-HHHH--HhcCccHHHHHHHHHHHHHh
Confidence 6778999999999999999988753 22344433 32221111111 111 1110 001122356777788888 5
Q ss_pred cCCHHHHHHHHH
Q 014555 295 KRSLKLFETALR 306 (422)
Q Consensus 295 ~~dl~~f~~~l~ 306 (422)
+++|.+-..+-.
T Consensus 673 sgnyqka~d~yk 684 (840)
T KOG2003|consen 673 SGNYQKAFDLYK 684 (840)
T ss_pred cccHHHHHHHHH
Confidence 677775544433
No 47
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=96.40 E-value=0.44 Score=49.90 Aligned_cols=206 Identities=15% Similarity=0.115 Sum_probs=127.4
Q ss_pred ChHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcc---cchhHHHHHHHHHHHHh
Q 014555 21 NPSDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSL---IPKAKTAKIVRGIIDAV 96 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~---~~k~~~~k~v~~~l~~~ 96 (422)
++.+|+..|++-+... ..-+++-...--.+..|+.+|++.|++++-..++..-...+.. .+-..++..+..+...+
T Consensus 256 k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~ 335 (508)
T KOG1840|consen 256 KYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAIL 335 (508)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHH
Confidence 4788888888766431 1011112344557889999999999999988888776665543 23345555666655555
Q ss_pred hcCCCChhHHHHHHHHHHHHHH---hcchhHH-hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccc-hhHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTR---AEKRTFL-RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK-LLLVDIDL 171 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~---~~~r~~l-r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~-~~~~e~~l 171 (422)
..... .+.-..++....+... .+.-.-+ ++ ...|+.+|...|.|++|.+++.+.+...+...++ ...+-..+
T Consensus 336 ~~~~~-~Eea~~l~q~al~i~~~~~g~~~~~~a~~--~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l 412 (508)
T KOG1840|consen 336 QSMNE-YEEAKKLLQKALKIYLDAPGEDNVNLAKI--YANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPL 412 (508)
T ss_pred HHhcc-hhHHHHHHHHHHHHHHhhccccchHHHHH--HHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHH
Confidence 43322 2333344443333221 1111122 33 5599999999999999999999998777665543 22222111
Q ss_pred -HHHHHHHhhCCHHHHHHHHHHHHHhhccC-CCCchhhHHHHHHHHHHhchhhcHHHHHHH
Q 014555 172 -LESKLHFSLRNLPKAKAALTAARTAANAI-YVPPAQQGTIDLQSGILHAEEKDYKTAYSY 230 (422)
Q Consensus 172 -~~~~~~~~~~n~~kak~~l~~a~~~~~~i-~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~ 230 (422)
.-...|...+++..|-..+..+..+.... +.+|.+...+.-.++.| ...|+|..|..+
T Consensus 413 ~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y-~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 413 NQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALY-RAQGNYEAAEEL 472 (508)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHH-HHcccHHHHHHH
Confidence 12345678889999999999998887332 34667776666555544 367888877643
No 48
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=96.35 E-value=0.43 Score=55.47 Aligned_cols=196 Identities=16% Similarity=0.123 Sum_probs=111.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH--------HH
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI--------VR 90 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~--------v~ 90 (422)
..+.++|++.|...++..+.+. | +...++.++.+.|+++.....+..+....+.-+-...... ..
T Consensus 474 ~g~~~eA~~~~~~Al~~~P~~~----~---~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~ 546 (1157)
T PRK11447 474 QGKWAQAAELQRQRLALDPGSV----W---LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDR 546 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH----H---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHH
Confidence 3468999999999998765432 2 5678899999999999999888877654432221111100 01
Q ss_pred HHHHHhhcCCCCh--hHHHHHH-----HHHHHHHH---hcc-----hhHH-----hhHHHHHHHHHHHhcccHHHHHHHH
Q 014555 91 GIIDAVAKIPGTS--ELQIALC-----KEMVQWTR---AEK-----RTFL-----RQRVEARLAALLMESREYTEALTLL 150 (422)
Q Consensus 91 ~~l~~~~~~~~~~--~~~~~l~-----~~~i~~~~---~~~-----r~~l-----r~~l~~~La~~~~~~g~~~~A~~~l 150 (422)
..+..+..+|... +.-.++. ..++..+. ..| .-.+ ...+...|+.++.+.|++++|.+.+
T Consensus 547 ~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y 626 (1157)
T PRK11447 547 AALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAY 626 (1157)
T ss_pred HHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHH
Confidence 2333333333210 0000000 00001000 000 0011 0112457899999999999999999
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHH
Q 014555 151 TSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSY 230 (422)
Q Consensus 151 ~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~ 230 (422)
..++.. ++. ..+..+..++++...|++.+|...+..+.... +.++.. ...-|..+...+++.+|...
T Consensus 627 ~~al~~----~P~--~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~---p~~~~~----~~~la~~~~~~g~~~eA~~~ 693 (1157)
T PRK11447 627 QRVLTR----EPG--NADARLGLIEVDIAQGDLAAARAQLAKLPATA---NDSLNT----QRRVALAWAALGDTAAAQRT 693 (1157)
T ss_pred HHHHHh----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC---CCChHH----HHHHHHHHHhCCCHHHHHHH
Confidence 888753 221 23455556778888888888888887654432 111111 22345566677788888877
Q ss_pred HHHH
Q 014555 231 FFEA 234 (422)
Q Consensus 231 f~ea 234 (422)
|-.+
T Consensus 694 ~~~a 697 (1157)
T PRK11447 694 FNRL 697 (1157)
T ss_pred HHHH
Confidence 7644
No 49
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.21 E-value=0.52 Score=43.23 Aligned_cols=167 Identities=14% Similarity=0.101 Sum_probs=95.3
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
+...|.... ..+..+|++.|..|++.-+.+. +..++...++..+++.|+++.-...+..+...++.-+...-+ .
T Consensus 8 lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~----~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A-~ 82 (203)
T PF13525_consen 8 LYQKALEALQQGDYEEAIKLFEKLIDRYPNSP----YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYA-L 82 (203)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHH-TTST----THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHH-H
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCh----HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhH-H
Confidence 555666654 4579999999999998755432 677899999999999999999999999888877654332111 1
Q ss_pred HHHHHHHhhcC-------CCCh--hHHHHHHHHHHHHHHh------------cchhHH-hhHHHHHHHHHHHhcccHHHH
Q 014555 89 VRGIIDAVAKI-------PGTS--ELQIALCKEMVQWTRA------------EKRTFL-RQRVEARLAALLMESREYTEA 146 (422)
Q Consensus 89 v~~~l~~~~~~-------~~~~--~~~~~l~~~~i~~~~~------------~~r~~l-r~~l~~~La~~~~~~g~~~~A 146 (422)
-...+.++... .+.. ..-+..++.++..--+ +=+..+ +. +...|++|+..|.|..|
T Consensus 83 Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~--e~~ia~~Y~~~~~y~aA 160 (203)
T PF13525_consen 83 YMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH--ELYIARFYYKRGKYKAA 160 (203)
T ss_dssp HHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH--HHHHHHHHHCTT-HHHH
T ss_pred HHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHcccHHHH
Confidence 11111111110 0100 0112333333332110 001112 22 66889999999999999
Q ss_pred HHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHH
Q 014555 147 LTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKA 186 (422)
Q Consensus 147 ~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~ka 186 (422)
..-.+.+++.-..+ ...=+.....++.|..+|....+
T Consensus 161 ~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 161 IIRFQYVIENYPDT---PAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCChHHH
Confidence 99999988664332 12223334445677778776644
No 50
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=96.06 E-value=0.19 Score=40.73 Aligned_cols=110 Identities=13% Similarity=0.161 Sum_probs=78.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+..+...-. +.....+..+...+++...|++..|...+..+...... + ......
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~-~~~~~~ 78 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYP---KSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---S-PKAPDA 78 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCC---CccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---C-CcccHH
Confidence 4788889999999999999998875321 22233456666788999999999999999887654211 1 122333
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHH
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFS 249 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~ 249 (422)
....|..+...+++..|...|-++...+.. ++...++
T Consensus 79 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~--~~~~~~~ 115 (119)
T TIGR02795 79 LLKLGMSLQELGDKEKAKATLQQVIKRYPG--SSAAKLA 115 (119)
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHCcC--ChhHHHH
Confidence 455677777899999999999988887653 3444444
No 51
>PF09756 DDRGK: DDRGK domain; InterPro: IPR019153 This is a family of proteins of approximately 300 residues. They contain a highly conserved DDRGK motif. The function is unknown. ; PDB: 1WI9_A.
Probab=96.01 E-value=0.012 Score=53.26 Aligned_cols=74 Identities=19% Similarity=0.292 Sum_probs=43.6
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHH
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKV 409 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l 409 (422)
...++.+++.-..|.|.+||..||++++++-..|-.+..+|.|.|.||.-...|.++... ++.+..++..-++|
T Consensus 101 L~~Fi~yIK~~Kvv~ledla~~f~l~t~~~i~ri~~L~~~g~ltGv~DdrGkfIyIs~eE-----~~~va~fi~~rGRv 174 (188)
T PF09756_consen 101 LQEFINYIKEHKVVNLEDLAAEFGLRTQDVINRIQELEAEGRLTGVIDDRGKFIYISEEE-----MEAVAKFIKQRGRV 174 (188)
T ss_dssp HHHHHHHHHH-SEE-HHHHHHHH-S-HHHHHHHHHHHHHHSSS-EEE-TT--EEE------------------------
T ss_pred HHHHHHHHHHcceeeHHHHHHHcCCCHHHHHHHHHHHHHCCCceeeEcCCCCeEEecHHH-----HHHHHHHHHHcCCc
Confidence 466778888889999999999999999999999999999999999999988888886543 34555555555555
No 52
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.71 E-value=0.35 Score=49.04 Aligned_cols=206 Identities=11% Similarity=0.087 Sum_probs=122.5
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhh
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVA 97 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~ 97 (422)
+..|.+.|.+-+.+-+..+. ++..++..|+-.+-+.|+.++..+.+- +.++ +..+.++-+| ++-..+.
T Consensus 502 ~ngd~dka~~~ykeal~nda-------sc~ealfniglt~e~~~~ldeald~f~---klh~-il~nn~evl~-qianiye 569 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDA-------SCTEALFNIGLTAEALGNLDEALDCFL---KLHA-ILLNNAEVLV-QIANIYE 569 (840)
T ss_pred ecCcHHHHHHHHHHHHcCch-------HHHHHHHHhcccHHHhcCHHHHHHHHH---HHHH-HHHhhHHHHH-HHHHHHH
Confidence 34467889998888776443 677899999999999998887776654 4445 3455554443 3333333
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLH 177 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~ 177 (422)
.+.++ ..-++++.+.....-++- .+-.+|+++|-+.||...|....-+-.+.. -.....+| --.-+|
T Consensus 570 ~led~-aqaie~~~q~~slip~dp------~ilskl~dlydqegdksqafq~~ydsyryf---p~nie~ie---wl~ayy 636 (840)
T KOG2003|consen 570 LLEDP-AQAIELLMQANSLIPNDP------AILSKLADLYDQEGDKSQAFQCHYDSYRYF---PCNIETIE---WLAAYY 636 (840)
T ss_pred HhhCH-HHHHHHHHHhcccCCCCH------HHHHHHHHHhhcccchhhhhhhhhhccccc---CcchHHHH---HHHHHH
Confidence 33342 333444444333222221 124599999999999998875432211110 01222333 224567
Q ss_pred HhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHH-HH
Q 014555 178 FSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYML-LC 256 (422)
Q Consensus 178 ~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~v-L~ 256 (422)
+...=+.++-.++++|.-+..... ++|-.+-.| .-..|+|..|+..|.+.-+.|. +.+.||+++| +|
T Consensus 637 idtqf~ekai~y~ekaaliqp~~~---kwqlmiasc----~rrsgnyqka~d~yk~~hrkfp-----edldclkflvri~ 704 (840)
T KOG2003|consen 637 IDTQFSEKAINYFEKAALIQPNQS---KWQLMIASC----FRRSGNYQKAFDLYKDIHRKFP-----EDLDCLKFLVRIA 704 (840)
T ss_pred HhhHHHHHHHHHHHHHHhcCccHH---HHHHHHHHH----HHhcccHHHHHHHHHHHHHhCc-----cchHHHHHHHHHh
Confidence 777777888888888765542221 333222222 3356899999999988888774 4578888855 34
Q ss_pred HHHh
Q 014555 257 KIMV 260 (422)
Q Consensus 257 ~lL~ 260 (422)
.=|+
T Consensus 705 ~dlg 708 (840)
T KOG2003|consen 705 GDLG 708 (840)
T ss_pred cccc
Confidence 4333
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.71 E-value=2.2 Score=45.28 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=117.6
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+-.+|+..|..+-..--+.++ ++.++++.||+.++++.-...+..++..-+- +..--++-.+++=++.
T Consensus 334 ~~~~A~~~~~klp~h~~nt~w-------vl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--rv~~meiyST~LWHLq--- 401 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGW-------VLSQLGRAYFELIEYDQAERIFSLVRRIEPY--RVKGMEIYSTTLWHLQ--- 401 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchH-------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc--cccchhHHHHHHHHHH---
Confidence 447888888884443333222 6789999999999999998888888764442 4444455555555553
Q ss_pred CChhHHH-HHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 101 GTSELQI-ALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 101 ~~~~~~~-~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
+ ...+ -|.+.+++.....-..|. -+++.|--++|++.|++..+.-+. .|++-.+. |-+.-.-+..
T Consensus 402 ~--~v~Ls~Laq~Li~~~~~sPesWc------a~GNcfSLQkdh~~Aik~f~RAiQ----ldp~faYa--yTLlGhE~~~ 467 (638)
T KOG1126|consen 402 D--EVALSYLAQDLIDTDPNSPESWC------ALGNCFSLQKDHDTAIKCFKRAIQ----LDPRFAYA--YTLLGHESIA 467 (638)
T ss_pred h--hHHHHHHHHHHHhhCCCCcHHHH------HhcchhhhhhHHHHHHHHHHHhhc----cCCccchh--hhhcCChhhh
Confidence 1 2222 356777776654455777 788999999999999998876531 23221111 1111112234
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...+++|...+..|.. ++|+--...+. -|.+|...++|+.|--+|-.|++
T Consensus 468 ~ee~d~a~~~fr~Al~------~~~rhYnAwYG-lG~vy~Kqek~e~Ae~~fqkA~~ 517 (638)
T KOG1126|consen 468 TEEFDKAMKSFRKALG------VDPRHYNAWYG-LGTVYLKQEKLEFAEFHFQKAVE 517 (638)
T ss_pred hHHHHhHHHHHHhhhc------CCchhhHHHHh-hhhheeccchhhHHHHHHHhhhc
Confidence 4566777766665543 35555555444 46778899999999988888875
No 54
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=95.68 E-value=0.14 Score=38.17 Aligned_cols=93 Identities=16% Similarity=0.118 Sum_probs=67.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++.+|...+....... +... .++.....++...+++.+|...+..+...... ++ ..
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~----~~ 70 (100)
T cd00189 4 LNLGNLYYKLGDYDEALEYYEKALELD----PDNA--DAYYNLAAAYYKLGKYEEALEDYEKALELDPD---NA----KA 70 (100)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHhcC----CccH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc---ch----hH
Confidence 368888999999999999888876432 1111 45566677888899999999998877654321 11 33
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...-|.++...+++..|..+|-.+..
T Consensus 71 ~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 71 YYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 45567778888999999988877754
No 55
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.65 E-value=2 Score=47.76 Aligned_cols=195 Identities=10% Similarity=0.036 Sum_probs=120.9
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc---hhHHHHHHHHHHHHh
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP---KAKTAKIVRGIIDAV 96 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~---k~~~~k~v~~~l~~~ 96 (422)
.+.++|++.|..+++........ +...++..+...|+++.....+..+...-+.-+ ......+... ++
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~------a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a---~~ 321 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPW------AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYS---LL 321 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHH------HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHH---HH
Confidence 35788999999988764221111 122257899999999999988887654221110 1111111111 11
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhc-----------chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchh
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAE-----------KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLL 165 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~-----------~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~ 165 (422)
. . +..+.-+.+++......... +--|+.. ...++.++...|++++|.+.+++++.. .+..
T Consensus 322 ~-~-g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a--~~~~a~~l~~~g~~~eA~~~l~~al~~----~P~n- 392 (765)
T PRK10049 322 E-S-ENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQG--QSLLSQVAKYSNDLPQAEMRARELAYN----APGN- 392 (765)
T ss_pred h-c-ccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCC-
Confidence 1 1 11122233444443321000 0023323 448899999999999999999988643 2222
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 166 LVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 166 ~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
.++.+..+.++...|++.+|...++++.... |.-. .+....|..++..++|..|-..+-++...+.+
T Consensus 393 -~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~------Pd~~-~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd 459 (765)
T PRK10049 393 -QGLRIDYASVLQARGWPRAAENELKKAEVLE------PRNI-NLEVEQAWTALDLQEWRQMDVLTDDVVAREPQ 459 (765)
T ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC------CCCh-HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 4566777889999999999999999887753 2221 25566777888999999999999888776654
No 56
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=95.56 E-value=1.4 Score=48.69 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=77.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-..||..|+..|||..+..+.......+ ..+..+.+-+..-.|.|+++||+.+|..+|..|....+.-++=|.+-
T Consensus 273 l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-- 347 (1018)
T KOG2002|consen 273 LNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-- 347 (1018)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc--
Confidence 3489999999999999988776665432 34556777788889999999999999999999887665432222222
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
-|.+++.++++..|...|...++.+.
T Consensus 348 ----lgQm~i~~~dle~s~~~fEkv~k~~p 373 (1018)
T KOG2002|consen 348 ----LGQMYIKRGDLEESKFCFEKVLKQLP 373 (1018)
T ss_pred ----hhHHHHHhchHHHHHHHHHHHHHhCc
Confidence 57888999999999988887776554
No 57
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=95.44 E-value=1.7 Score=50.54 Aligned_cols=196 Identities=10% Similarity=0.015 Sum_probs=116.4
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh-HHHHHHH-------
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA-KTAKIVR------- 90 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~-~~~k~v~------- 90 (422)
..+.++|++.|...++..+.+. .++..++.++...|++++..+.+.......+.-+.. ....++.
T Consensus 282 ~g~~~~A~~~l~~aL~~~P~~~-------~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 282 SGQGGKAIPELQQAVRANPKDS-------EALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred CCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 3468999999999998765443 367789999999999999988888776544322111 1111111
Q ss_pred --HHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc------
Q 014555 91 --GIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD------ 162 (422)
Q Consensus 91 --~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~------ 162 (422)
.....+. . +..+.-++.++..++.-. +..+. ...|+.++...|++++|.+.+..++..-.....
T Consensus 355 ~~~g~~~~~-~-g~~~eA~~~~~~Al~~~P--~~~~a----~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~ 426 (1157)
T PRK11447 355 IQQGDAALK-A-NNLAQAERLYQQARQVDN--TDSYA----VLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLA 426 (1157)
T ss_pred HHHHHHHHH-C-CCHHHHHHHHHHHHHhCC--CCHHH----HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 0001111 1 111222444444444311 11222 336788888888888888888776542111000
Q ss_pred ------------------------------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHH
Q 014555 163 ------------------------------KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDL 212 (422)
Q Consensus 163 ------------------------------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~ 212 (422)
.....+.+..+...+...|++.+|...++++...... +| .+..
T Consensus 427 ~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~---~~----~~~~ 499 (1157)
T PRK11447 427 NLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG---SV----WLTY 499 (1157)
T ss_pred HHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---CH----HHHH
Confidence 0011223344566777889999999999888765311 22 2334
Q ss_pred HHHHHhchhhcHHHHHHHHHHHhh
Q 014555 213 QSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 213 ~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
.-|.++...++|..|...|-.+..
T Consensus 500 ~LA~~~~~~G~~~~A~~~l~~al~ 523 (1157)
T PRK11447 500 RLAQDLRQAGQRSQADALMRRLAQ 523 (1157)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 567777888999999988877765
No 58
>KOG3250 consensus COP9 signalosome, subunit CSN7 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.37 E-value=0.086 Score=48.13 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=87.5
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCC-hH
Q 014555 280 GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-ID 358 (422)
Q Consensus 280 ~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~ 358 (422)
.|.-.++..++..|..|++..+..-.... +.+..+-. ..|. ...+..+...-+.|.-..+-..+.++ +-
T Consensus 56 e~~dsa~lrlL~lFa~Gt~~Dy~aea~rl-p~Ls~~q~-----~kLk----~ltV~slas~~k~lpy~~Ll~~l~~~nvr 125 (258)
T KOG3250|consen 56 EPIDSAYLRLLELFAYGTYRDYSAEALRL-PKLSLAQL-----NKLK----HLTVVSLASFEKCLPYLVLLRLLPSRNVR 125 (258)
T ss_pred ccccHHHHHHHHHHhcCchhhhhhhhhcC-CCCCHHHH-----Hhhh----cceehhhhhhchhhhHHHHHhhccCCchh
Confidence 34456778899999999999887543222 12222221 1111 12223333344566666677778875 79
Q ss_pred HHHHHHHhhhhcCCceeeeecCCCEEEEec-------CCchhhHHHHHHHHHHHHHHHHHHHHHH
Q 014555 359 HVEKKLSQMILDKKFAGTLDQGVGCLIIFE-------DPKADAIYPATLETISNMGKVVDSLFVR 416 (422)
Q Consensus 359 evE~~l~~mI~~g~i~gkIDq~~g~v~~~~-------~~~~~~~~~~l~~~~~~l~~l~~~l~~~ 416 (422)
++|.++.+++-.+-+.|+|||-++++++.+ +.+.+++--.+.+|+...+.++-.+-+.
T Consensus 126 elEd~iieamya~IlrGkldqr~q~leV~faigRdlr~k~i~nm~~TL~~w~~~cenvL~~ie~q 190 (258)
T KOG3250|consen 126 ELEDLIIEAMYADILRGKLDQRNQTLEVDFAIGRDLRSKDIDNMKYTLDEWCEGCENVLFGIEAQ 190 (258)
T ss_pred HHHHHHHHHHHHHHHHhhHHhhcceEeechhhcccccHhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999986 3445566666889999998888665444
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=95.36 E-value=0.49 Score=45.37 Aligned_cols=61 Identities=11% Similarity=0.052 Sum_probs=0.0
Q ss_pred ccchHHHHHhhc-CChHHHHHHHHhhcCCC--CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 8 ATTDSIAQAKEA-SNPSDAISMLYRVLDDP--SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 8 ~~~~~~ak~~~~-~~~~~Ai~~l~~i~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
...+.-|+.+.. .+++.|++.|...+... ..+. .....++.++...|+++...+.+..+..
T Consensus 9 ~~~l~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~-------~~~~~~a~La~~~~~~~~A~~ay~~l~~ 72 (280)
T PF13429_consen 9 EEALRLARLLYQRGDYEKALEVLKKAAQKIAPPDDP-------EYWRLLADLAWSLGDYDEAIEAYEKLLA 72 (280)
T ss_dssp -----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccc
Confidence 344555666543 36888888886544432 2211 2233466667777777777766666654
No 60
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=95.28 E-value=3 Score=44.05 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=54.4
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
+|+- .=||.+|-..|++++|++.++..+..+. -.+|+|+..+|++-..||+.+|-..++.|+.+
T Consensus 194 lw~~----~~lAqhyd~~g~~~~Al~~Id~aI~htP------t~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L 257 (517)
T PF12569_consen 194 LWTL----YFLAQHYDYLGDYEKALEYIDKAIEHTP------TLVELYMTKARILKHAGDLKEAAEAMDEAREL 257 (517)
T ss_pred HHHH----HHHHHHHHHhCCHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 5663 3789999999999999999998775432 36899999999999999999999999988765
No 61
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.20 E-value=2.9 Score=39.62 Aligned_cols=173 Identities=16% Similarity=0.126 Sum_probs=101.3
Q ss_pred cchHHHHH-hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHH
Q 014555 9 TTDSIAQA-KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 9 ~~~~~ak~-~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k 87 (422)
++..++.. +.+.|.++|++.|..+.++-.-++ |.+++...++.-+++.++++.....+......++.=+.+.=.-
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~----~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~ 111 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP----YSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY 111 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc----ccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence 45555555 456689999999999998766443 8899999999999999999998888777777665322111111
Q ss_pred HHHHHHHHhhcCCCChhHH------HHHHHHHHHHHH--------hcchhHHh---hHHHHHHHHHHHhcccHHHHHHHH
Q 014555 88 IVRGIIDAVAKIPGTSELQ------IALCKEMVQWTR--------AEKRTFLR---QRVEARLAALLMESREYTEALTLL 150 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~------~~l~~~~i~~~~--------~~~r~~lr---~~l~~~La~~~~~~g~~~~A~~~l 150 (422)
=++-+. .+..+++..-.+ +.=+.++++.-- ...-.++| +..++..+++|+..|.|..|..-.
T Consensus 112 YlkgLs-~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~ 190 (254)
T COG4105 112 YLKGLS-YFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRF 190 (254)
T ss_pred HHHHHH-HhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHH
Confidence 111111 233333321000 111222222100 01112221 122779999999999999999888
Q ss_pred HHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHH
Q 014555 151 TSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAA 189 (422)
Q Consensus 151 ~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~ 189 (422)
+.+++.-. +...--+-.......|..+|-...|+..
T Consensus 191 ~~v~e~y~---~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 191 EEVLENYP---DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHhccc---cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 88876522 1122222222234467777777666543
No 62
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=95.15 E-value=0.039 Score=41.52 Aligned_cols=50 Identities=20% Similarity=0.212 Sum_probs=39.6
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCC
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~ 381 (422)
..|+.+++-..+++++.||..|++|++.||.+|..++.-|+|.-.-+...
T Consensus 3 ~~i~~~l~~~~~~S~~eLa~~~~~s~~~ve~mL~~l~~kG~I~~~~~~~~ 52 (69)
T PF09012_consen 3 QEIRDYLRERGRVSLAELAREFGISPEAVEAMLEQLIRKGYIRKVDMSSC 52 (69)
T ss_dssp HHHHHHHHHS-SEEHHHHHHHTT--HHHHHHHHHHHHCCTSCEEEEEE--
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEecCCCC
Confidence 35677888889999999999999999999999999999999986555443
No 63
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.09 E-value=0.23 Score=37.58 Aligned_cols=68 Identities=18% Similarity=0.073 Sum_probs=54.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDD-KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~-~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
-..+|.+|...|+|++|++.+++.+.-.....+ ....+.++.....++...|++.+|...+++|..+.
T Consensus 8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 8 YNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 348899999999999999999998766333333 34568888889999999999999999999987653
No 64
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=95.05 E-value=3.3 Score=45.94 Aligned_cols=202 Identities=16% Similarity=0.054 Sum_probs=115.8
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCC
Q 014555 23 SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGT 102 (422)
Q Consensus 23 ~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~ 102 (422)
++|++.+..+++..+.+.+......++....+-.+...|++++....+..+...-...|.. ..-.+ -+.+....+
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~l---a~~yl~~g~- 287 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWV---ASAYLKLHQ- 287 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHH---HHHHHhcCC-
Confidence 6688888887754211111111222332221223457788888888888777543222222 11111 122221222
Q ss_pred hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh---------hccchhHHHHHHHH
Q 014555 103 SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRR---------LDDKLLLVDIDLLE 173 (422)
Q Consensus 103 ~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~---------~~~~~~~~e~~l~~ 173 (422)
.+.-+..++.+++-- ........-....|+..+.+.|++++|...+..+...... ..+.....+.+...
T Consensus 288 ~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~ 365 (765)
T PRK10049 288 PEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLL 365 (765)
T ss_pred cHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHH
Confidence 233345555544311 1100000011447788889999999999999888654211 01122456677788
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
+.++...|++++|...+.++.... | .- ..+...-|.++...+++..|...+-.+....
T Consensus 366 a~~l~~~g~~~eA~~~l~~al~~~---P---~n-~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 366 SQVAKYSNDLPQAEMRARELAYNA---P---GN-QGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC---C---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 889999999999999988876542 2 11 2355667778888999999999888886633
No 65
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=94.93 E-value=0.33 Score=42.84 Aligned_cols=107 Identities=20% Similarity=0.029 Sum_probs=75.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+...+.... +......++.....++...|++..|...+.++..+...........+.+
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i 115 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH
Confidence 3778889999999999999888765422 1222344666667899999999999999999876633221122344555
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
...-|..+...|+|..|..+|-+++..|..
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 145 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQ 145 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 666666666889999888888888766653
No 66
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=94.89 E-value=6 Score=41.60 Aligned_cols=192 Identities=13% Similarity=0.056 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchh----hcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc-c-
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPF----FSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAE-K- 121 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~----~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~-~- 121 (422)
.++..++..|+.+|+++.-...+++-... ++ .--..++.+...+-..+.... ....-+.+++..++...+. |
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G-~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG-LKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC-ccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcCC
Confidence 34445999999999999987777665543 22 112233444443444443222 1233366777776654310 1
Q ss_pred hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 122 RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 122 r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
...=.+..-.+||.+|...|++.+|...+.....=..+.+ .....-..+...+-++...+.+..|..++..+..+-..
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 1111233345899999999999999887776543322221 11222233444455788889999999999988776654
Q ss_pred CC-CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 200 IY-VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 200 i~-~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
.+ +.....+.++.--|..+...|+|.+|...|-+|.....+.
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~ 400 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILREL 400 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc
Confidence 43 2222557788888888889999999999999887666554
No 67
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.75 E-value=0.53 Score=43.86 Aligned_cols=120 Identities=18% Similarity=0.188 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
.+|| .|+--|++.||+..|.+-|.+.+. .|++.. ..++..+.+|...|..+.|...|.+|.++.. .
T Consensus 36 ~arl--qLal~YL~~gd~~~A~~nlekAL~----~DPs~~--~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p------~ 101 (250)
T COG3063 36 KARL--QLALGYLQQGDYAQAKKNLEKALE----HDPSYY--LAHLVRAHYYQKLGENDLADESYRKALSLAP------N 101 (250)
T ss_pred HHHH--HHHHHHHHCCCHHHHHHHHHHHHH----hCcccH--HHHHHHHHHHHHcCChhhHHHHHHHHHhcCC------C
Confidence 3544 788889999999999988887763 344433 3455567789999999999999999977642 2
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCc
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQA 263 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~ 263 (422)
--..+.-+ |-..+..|.|.+|..+|-.|...+.= +.+ -..+-.+++|++=.+..
T Consensus 102 ~GdVLNNY-G~FLC~qg~~~eA~q~F~~Al~~P~Y-~~~--s~t~eN~G~Cal~~gq~ 155 (250)
T COG3063 102 NGDVLNNY-GAFLCAQGRPEEAMQQFERALADPAY-GEP--SDTLENLGLCALKAGQF 155 (250)
T ss_pred ccchhhhh-hHHHHhCCChHHHHHHHHHHHhCCCC-CCc--chhhhhhHHHHhhcCCc
Confidence 22233334 44556788999999999999764431 111 23344689999855553
No 68
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=94.48 E-value=8.8 Score=41.85 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=66.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...++.++...|++++|...++..+.- ++... ++...-..++...|++..|...+.++.... |... .
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l----~P~~~--~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~-~ 353 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLAT----HPDLP--YVRAMYARALRQVGQYTAASDEFVQLAREK------GVTS-K 353 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccch-H
Confidence 448899999999999999988887642 22222 233334678889999999998887665432 2211 2
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
.....|..+...|++..|...|-.+....
T Consensus 354 ~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 354 WNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23334667778899999998888776543
No 69
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=94.47 E-value=0.73 Score=40.86 Aligned_cols=106 Identities=19% Similarity=-0.019 Sum_probs=66.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+.+.+..... ......++.....++...|++.+|...+.++..............+.+
T Consensus 39 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 39 YRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 38889999999999999999987654221 112345666678899999999999999998876532211000111223
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
....|......+++..|...|.++...+.
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 33333333445566666666666554443
No 70
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=94.30 E-value=0.86 Score=43.69 Aligned_cols=182 Identities=15% Similarity=0.112 Sum_probs=67.7
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+.+.|++.+..++..... ....+..++.+ ...++++...++....-... .....+...+..+....
T Consensus 59 ~~~~A~~ay~~l~~~~~~-------~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~~~l~~~l~~~~~~~ 124 (280)
T PF13429_consen 59 DYDEAIEAYEKLLASDKA-------NPQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDPRYLLSALQLYYRLG 124 (280)
T ss_dssp -------------------------------------------------------------------------H-HHHTT
T ss_pred cccccccccccccccccc-------ccccccccccc-cccccccccccccccccccc------cccchhhHHHHHHHHHh
Confidence 578888888888865432 22244556666 57777777766654432211 12233334444443333
Q ss_pred CChhHHHHHHHHHHHHH--HhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 101 GTSELQIALCKEMVQWT--RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~--~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
+ .+.-.++++.+.... ..+-..|+ .+|.++.+.|++++|.+.++..++.-. ++... ...-+.++.
T Consensus 125 ~-~~~~~~~l~~~~~~~~~~~~~~~~~------~~a~~~~~~G~~~~A~~~~~~al~~~P--~~~~~----~~~l~~~li 191 (280)
T PF13429_consen 125 D-YDEAEELLEKLEELPAAPDSARFWL------ALAEIYEQLGDPDKALRDYRKALELDP--DDPDA----RNALAWLLI 191 (280)
T ss_dssp --HHHHHHHHHHHHH-T---T-HHHHH------HHHHHHHHCCHHHHHHHHHHHHHHH-T--T-HHH----HHHHHHHHC
T ss_pred H-HHHHHHHHHHHHhccCCCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHH----HHHHHHHHH
Confidence 2 222234444444322 11223333 678888888999998888888765422 11111 222244667
Q ss_pred hhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 179 SLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..|+..+++.++........ .+|.+. ..-|..+..-|++..|..+|-.+..
T Consensus 192 ~~~~~~~~~~~l~~~~~~~~---~~~~~~----~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 192 DMGDYDEAREALKRLLKAAP---DDPDLW----DALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp TTCHHHHHHHHHHHHHHH-H---TSCCHC----HHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHHCc---CHHHHH----HHHHHHhcccccccccccccccccc
Confidence 78888888888876655431 133443 2346667777888888888877654
No 71
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=94.17 E-value=0.46 Score=34.54 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=47.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.+|..+++.|+|++|.+.++.++.. + ..-.++.....+++...|++..|...+.++...
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~----~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ----D--PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC----S--TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH----C--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6789999999999999999998742 2 236667777788999999999999999887654
No 72
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=94.15 E-value=0.38 Score=36.39 Aligned_cols=73 Identities=14% Similarity=0.062 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 166 LVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 166 ~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...++...+.+|...|++.+|...+++|..+......+....+.....-|..+...|+|.+|..+|-++++-+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIF 76 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 3455666788999999999999999999988544442222346777778889999999999999999887643
No 73
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.07 E-value=5.3 Score=37.54 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=33.5
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHH
Q 014555 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLY 326 (422)
Q Consensus 281 ~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~ 326 (422)
++...+++|..+....|...|.+....|...-+.|.+.-.++-.+.
T Consensus 232 REckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 232 RECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 4567889999999999999999988887665555665443333333
No 74
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=93.98 E-value=0.47 Score=36.59 Aligned_cols=74 Identities=26% Similarity=0.352 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHh--cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHH
Q 014555 107 IALCKEMVQWTRA--EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLP 184 (422)
Q Consensus 107 ~~l~~~~i~~~~~--~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~ 184 (422)
+.+++.+++...+ +...| ..+|..|+..|+|.+|.++++.. +.++. -+++....++.++.+|++.
T Consensus 9 i~~~~k~~~~~~~~~~~~~~------~~la~~~~~~~~y~~A~~~~~~~-----~~~~~--~~~~~~l~a~~~~~l~~y~ 75 (84)
T PF12895_consen 9 IKYYEKLLELDPTNPNSAYL------YNLAQCYFQQGKYEEAIELLQKL-----KLDPS--NPDIHYLLARCLLKLGKYE 75 (84)
T ss_dssp HHHHHHHHHHHCGTHHHHHH------HHHHHHHHHTTHHHHHHHHHHCH-----THHHC--HHHHHHHHHHHHHHTT-HH
T ss_pred HHHHHHHHHHCCCChhHHHH------HHHHHHHHHCCCHHHHHHHHHHh-----CCCCC--CHHHHHHHHHHHHHhCCHH
Confidence 4556666665432 11222 36899999999999999988871 11222 2444445589999999999
Q ss_pred HHHHHHHHH
Q 014555 185 KAKAALTAA 193 (422)
Q Consensus 185 kak~~l~~a 193 (422)
+|...+.++
T Consensus 76 eAi~~l~~~ 84 (84)
T PF12895_consen 76 EAIKALEKA 84 (84)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhcC
Confidence 999888764
No 75
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=93.86 E-value=8 Score=38.85 Aligned_cols=193 Identities=15% Similarity=0.085 Sum_probs=115.8
Q ss_pred chHHHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHH-
Q 014555 10 TDSIAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAK- 87 (422)
Q Consensus 10 ~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k- 87 (422)
.+.-|+.+... |.+.|...+..+.++.+.. .+++.-..++|...|+|..+...+..+++-.- ++....+.
T Consensus 156 ~ltrarlll~~~d~~aA~~~v~~ll~~~pr~-------~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~-l~~~e~~~l 227 (400)
T COG3071 156 ELTRARLLLNRRDYPAARENVDQLLEMTPRH-------PEVLRLALRAYIRLGAWQALLAILPKLRKAGL-LSDEEAARL 227 (400)
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHhCcCC-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHccC-CChHHHHHH
Confidence 34456665544 5678888888877775432 23666777899999999999999999887432 33333332
Q ss_pred ---HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhh--HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc
Q 014555 88 ---IVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ--RVEARLAALLMESREYTEALTLLTSLVKEVRRLDD 162 (422)
Q Consensus 88 ---~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~--~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~ 162 (422)
..+.+++-.....++.+ +.+|=++- --=+|+ +|...+|.-+.+.|+.++|.+++.+.++ +.-|
T Consensus 228 e~~a~~glL~q~~~~~~~~g--------L~~~W~~~-pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk---~~~D 295 (400)
T COG3071 228 EQQAWEGLLQQARDDNGSEG--------LKTWWKNQ-PRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK---RQWD 295 (400)
T ss_pred HHHHHHHHHHHHhccccchH--------HHHHHHhc-cHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH---hccC
Confidence 23333343322222211 22221100 000111 3456788889999999999988877664 3334
Q ss_pred chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 163 KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 163 ~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
.. +...+ -++..+|..+.....++..+ ..+.+| -+...-|.++..++.|.+|..+|--|+
T Consensus 296 ~~-L~~~~-----~~l~~~d~~~l~k~~e~~l~---~h~~~p----~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 296 PR-LCRLI-----PRLRPGDPEPLIKAAEKWLK---QHPEDP----LLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred hh-HHHHH-----hhcCCCCchHHHHHHHHHHH---hCCCCh----hHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33 11111 34566777776655554433 233345 456778999999999999998877554
No 76
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.60 E-value=4.2 Score=38.85 Aligned_cols=67 Identities=19% Similarity=0.247 Sum_probs=43.3
Q ss_pred HHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchh-hhhcccccccccCcchHHHHHH
Q 014555 215 GILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVA-GIISSKAGLQYVGPELDAMKAV 289 (422)
Q Consensus 215 g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~-~ll~~~~~~~~~~~~i~~~~~L 289 (422)
+..|+..++|.+|-...-++...... + -..|..+++|+.+.+..+++. +.+++ . +..+|+.++.+.+
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~--d---petL~Nliv~a~~~Gkd~~~~~r~l~Q-L--k~~~p~h~~vk~~ 281 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAK--D---PETLANLIVLALHLGKDAEVTERNLSQ-L--KLSHPEHPFVKHL 281 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCC--C---HHHHHHHHHHHHHhCCChHHHHHHHHH-H--HhcCCcchHHHHH
Confidence 45577889999999999999876543 2 355667888888887765543 32222 1 1245666666554
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=93.60 E-value=0.84 Score=38.17 Aligned_cols=96 Identities=19% Similarity=0.017 Sum_probs=70.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...++..+...|++++|...++.+... ++. ..+++......+...|++..|...+.++...... + ..
T Consensus 20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~---~----~~ 86 (135)
T TIGR02552 20 IYALAYNLYQQGRYDEALKLFQLLAAY----DPY--NSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD---D----PR 86 (135)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC---C----hH
Confidence 348888999999999999998887542 222 2344455577888999999999999887665311 1 22
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
....-|..+...++|..|...|-.+.+..
T Consensus 87 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 87 PYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 33557788889999999999888876643
No 78
>PLN03218 maturation of RBCL 1; Provisional
Probab=93.49 E-value=18 Score=41.75 Aligned_cols=24 Identities=13% Similarity=0.069 Sum_probs=13.3
Q ss_pred HHHHHHHHHcccHHHHHHHHHHhc
Q 014555 51 TELSDLLRQENRAQDLCNLLTQLR 74 (422)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~~~~~l~ 74 (422)
..++..|++.|++++..+.+..+.
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~ 534 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMR 534 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHH
Confidence 344555666666666555555553
No 79
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=93.03 E-value=7.3 Score=35.92 Aligned_cols=184 Identities=8% Similarity=-0.067 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
.........+..+++.|+++.....+..+.+..+.= ......-..+-..+....+ .+.-++.++.+++...+....
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~--~~~~~a~~~la~~~~~~~~-~~~A~~~~~~~l~~~p~~~~~- 106 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFS--PYAEQAQLDLAYAYYKSGD-YAEAIAAADRFIRLHPNHPDA- 106 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCch-
Confidence 556688899999999999999988888777655421 1111111122222222222 233356666666543222111
Q ss_pred HhhHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHhhhccch-----------hHHHHHHHHHHHHHhhCCHHH
Q 014555 125 LRQRVEARLAALLME--------SREYTEALTLLTSLVKEVRRLDDKL-----------LLVDIDLLESKLHFSLRNLPK 185 (422)
Q Consensus 125 lr~~l~~~La~~~~~--------~g~~~~A~~~l~~l~~e~~~~~~~~-----------~~~e~~l~~~~~~~~~~n~~k 185 (422)
-.. -..++..+.. .|++++|.+.++.++..-....... ......+....+++..|++.+
T Consensus 107 ~~a--~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~ 184 (235)
T TIGR03302 107 DYA--YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVA 184 (235)
T ss_pred HHH--HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHH
Confidence 001 1234444444 3889999999988875422211000 001112345677888899999
Q ss_pred HHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 186 AKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 186 ak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
|...++.+...-.. .| .........|..+...|+|.+|..+|-..-..|
T Consensus 185 A~~~~~~al~~~p~---~~-~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 185 AINRFETVVENYPD---TP-ATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHHHHCCC---Cc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 98888776544211 11 112333457777888899998888665544443
No 80
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=92.96 E-value=0.86 Score=35.11 Aligned_cols=84 Identities=13% Similarity=0.044 Sum_probs=56.5
Q ss_pred hcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHh
Q 014555 139 ESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILH 218 (422)
Q Consensus 139 ~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~ 218 (422)
+.|+|++|+.++..++..... ..--.+.+..+++++..|++.+|-.++.+ ... +|.. ......-|..+
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~----~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~-~~~~~l~a~~~ 68 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT----NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSN-PDIHYLLARCL 68 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG----THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCH-HHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC----ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCC-HHHHHHHHHHH
Confidence 468999999999999866442 11333455568899999999999888776 222 1111 22333458999
Q ss_pred chhhcHHHHHHHHHHH
Q 014555 219 AEEKDYKTAYSYFFEA 234 (422)
Q Consensus 219 ~~~~dy~~A~~~f~ea 234 (422)
...++|.+|...|-++
T Consensus 69 ~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 69 LKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHTT-HHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHhcC
Confidence 9999999999877653
No 81
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=92.76 E-value=19 Score=39.90 Aligned_cols=330 Identities=12% Similarity=0.112 Sum_probs=164.4
Q ss_pred cchHHHHHh-hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHH
Q 014555 9 TTDSIAQAK-EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 9 ~~~~~ak~~-~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k 87 (422)
+++.+|.-+ +..|.++|.+.+.+||++++.. ..++++|+.+|-+.||.++-...-..-.+ ..|+.. .
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~-------~~ay~tL~~IyEqrGd~eK~l~~~llAAH---L~p~d~--e 208 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQDPRN-------PIAYYTLGEIYEQRGDIEKALNFWLLAAH---LNPKDY--E 208 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCccc-------hhhHHHHHHHHHHcccHHHHHHHHHHHHh---cCCCCh--H
Confidence 355566664 4457899999999999997633 34889999999999987765432221111 112332 3
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHH
Q 014555 88 IVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLV 167 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~ 167 (422)
+=..+-+...+..+ ...-.--+...|+--..+.+. --+.+.+|.+.|++..|++-...+..-+.. .|..-..
T Consensus 209 ~W~~ladls~~~~~-i~qA~~cy~rAI~~~p~n~~~------~~ers~L~~~~G~~~~Am~~f~~l~~~~p~-~d~er~~ 280 (895)
T KOG2076|consen 209 LWKRLADLSEQLGN-INQARYCYSRAIQANPSNWEL------IYERSSLYQKTGDLKRAMETFLQLLQLDPP-VDIERIE 280 (895)
T ss_pred HHHHHHHHHHhccc-HHHHHHHHHHHHhcCCcchHH------HHHHHHHHHHhChHHHHHHHHHHHHhhCCc-hhHHHHH
Confidence 33333333322111 111111122222211112222 236788899999999999988888765442 2212222
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh-----------
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE----------- 236 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~----------- 236 (422)
+.+-.-++++...++-.+|-.+++.+-..-.+....|.+ +.+.++ ++....|..|-.+-.+-..
T Consensus 281 d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~----ni~ael-~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~ 355 (895)
T KOG2076|consen 281 DLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDL----NILAEL-FLKNKQSDKALMKIVDDRNRESEKDDSEWD 355 (895)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHH----HHHHHH-HHHhHHHHHhhHHHHHHhccccCCChhhhh
Confidence 333334677888887788877777665422222112222 222222 3345555555544433222
Q ss_pred ----------hhhccCC--hhHHHHHHHHHHHHHHhcCccchhhhhcccccccc-cCcchHHHHHHHHHHhcC-CHHHHH
Q 014555 237 ----------AFNALED--PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQY-VGPELDAMKAVADAHSKR-SLKLFE 302 (422)
Q Consensus 237 ----------~~~~~~~--~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~-~~~~i~~~~~L~~af~~~-dl~~f~ 302 (422)
.+...++ +-.+.+ .++++|-+=....+....+++-...... .....+.+.++.++|.+. .+..-.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al 434 (895)
T KOG2076|consen 356 TDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEAL 434 (895)
T ss_pred hhhhccccccccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence 0111111 112233 3566665433333233333332211111 122356788999999554 344333
Q ss_pred HHHHHhHHhhhcCh----hH----HHhHH---HHHHHHHHHHHHHhhccc---ccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 303 TALRDFKAQLEEDP----IV----HRHLS---SLYDTLLEQNLCRLIEPY---SRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 303 ~~l~~~~~~l~~D~----~l----~~~~~---~L~~~i~~~~l~~i~~pY---s~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
..+. +....++ ++ ..+.. ..-+.+.--...-...|. -||+|+.|-+.+|-+. ++-..|.+++
T Consensus 435 ~~l~---~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~E-kalEtL~~~~ 510 (895)
T KOG2076|consen 435 RLLS---PITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHE-KALETLEQII 510 (895)
T ss_pred HHHH---HHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHH-HHHHHHhccc
Confidence 3332 2222222 11 11111 111222222233344563 6999999999999886 4444666766
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=92.27 E-value=26 Score=40.45 Aligned_cols=187 Identities=12% Similarity=0.093 Sum_probs=110.0
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchh-hcccchhHHHHHHHHHHHHhhcC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPF-FSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
+.++|++.|....+..-..+ ...+..++..|++.|+++...+.+..+... .+..|-. -..+.+++.+.+.
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD------~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~---vTynaLI~ay~k~ 592 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPD------RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDH---ITVGALMKACANA 592 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcH---HHHHHHHHHHHHC
Confidence 46777777777655431111 235667889999999999999988888642 2222222 3456677766644
Q ss_pred CCChhHHHHHHHHHHHHH-HhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 100 PGTSELQIALCKEMVQWT-RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~-~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
.+ .+.-.++++...+.- ..+-.+| ..+...|.+.|++++|.+++.++...-..++ ...|-.-+..|.
T Consensus 593 G~-ldeA~elf~~M~e~gi~p~~~ty------nsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD-----~~TynsLI~a~~ 660 (1060)
T PLN03218 593 GQ-VDRAKEVYQMIHEYNIKGTPEVY------TIAVNSCSQKGDWDFALSIYDDMKKKGVKPD-----EVFFSALVDVAG 660 (1060)
T ss_pred CC-HHHHHHHHHHHHHcCCCCChHHH------HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHH
Confidence 33 233345555544310 0000122 2677888899999999998888765322221 123334456788
Q ss_pred hhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 179 SLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
..|++.+|..++...... .+ +|... .+..-...|...|++..|...|-+.
T Consensus 661 k~G~~eeA~~l~~eM~k~--G~--~pd~~--tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 661 HAGDLDKAFEILQDARKQ--GI--KLGTV--SYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred hCCCHHHHHHHHHHHHHc--CC--CCCHH--HHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 888999998888776543 22 22221 1222233455678888888777665
No 83
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=92.23 E-value=1.5 Score=37.80 Aligned_cols=92 Identities=13% Similarity=0.018 Sum_probs=70.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.++..+...|++++|+..+..++.- ++ ...+.+.....++...|++..|...|.++....... +...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~----~P--~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~-------~~a~ 95 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMA----QP--WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH-------PEPV 95 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC-------cHHH
Confidence 5688889999999999988887532 22 244666667889999999999999999987764322 1223
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-|..+...|++.+|...|-.+..
T Consensus 96 ~~lg~~l~~~g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 96 YQTGVCLKMMGEPGLAREAFQTAIK 120 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4477888889999999999988865
No 84
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=92.06 E-value=18 Score=38.20 Aligned_cols=201 Identities=16% Similarity=0.114 Sum_probs=109.3
Q ss_pred HHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 14 AQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 14 ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
+.-+.+. ++++|++.|.+..+.-. -+.......++++.+.|++++....+..|...-+. ...+-..+.. +
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~-------Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~-~ 81 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQIL-------DKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEE-A 81 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCC-------CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHH-H
Confidence 3344444 58999999987655432 22334557789999999999998888888765542 2223222211 1
Q ss_pred HHHhhcCC-CChhHHHHHHHHHHHHHH---h---------cc-------hhHHhhHHH-------HHHHHHHHhcccHHH
Q 014555 93 IDAVAKIP-GTSELQIALCKEMVQWTR---A---------EK-------RTFLRQRVE-------ARLAALLMESREYTE 145 (422)
Q Consensus 93 l~~~~~~~-~~~~~~~~l~~~~i~~~~---~---------~~-------r~~lr~~l~-------~~La~~~~~~g~~~~ 145 (422)
+..-...+ +......++++++-+.-. . +| .-|++..|. ..|-.+|.+..+
T Consensus 82 ~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K--- 158 (517)
T PF12569_consen 82 LGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEK--- 158 (517)
T ss_pred HhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhH---
Confidence 11110111 112223344443322110 0 01 111111110 112222322222
Q ss_pred HHHHHHHHHHHHhhh---------------ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 146 ALTLLTSLVKEVRRL---------------DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 146 A~~~l~~l~~e~~~~---------------~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++.++..+.... .+++.++=++...++.|-..|++.+|-.++++|... .|.+ ..+
T Consensus 159 -~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~-~el 230 (517)
T PF12569_consen 159 -AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTL-VEL 230 (517)
T ss_pred -HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCc-HHH
Confidence 22344444433221 124556666777788999999999998888877443 3333 468
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHH
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
+..-|+++.+.|++..|+...=+|
T Consensus 231 y~~KarilKh~G~~~~Aa~~~~~A 254 (517)
T PF12569_consen 231 YMTKARILKHAGDLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 889999999999999999655444
No 85
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=91.92 E-value=7.3 Score=40.04 Aligned_cols=152 Identities=17% Similarity=0.142 Sum_probs=94.6
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
|...||+.+..-++-++.| +|+-+-|++.|.-.+...--.=.++.-.... +.-..+-..+=+-+++..
T Consensus 379 Nt~AAi~sYRrAvdi~p~D-------yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-----PnDsRlw~aLG~CY~kl~ 446 (559)
T KOG1155|consen 379 NTHAAIESYRRAVDINPRD-------YRAWYGLGQAYEIMKMHFYALYYFQKALELK-----PNDSRLWVALGECYEKLN 446 (559)
T ss_pred ccHHHHHHHHHHHhcCchh-------HHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-----CCchHHHHHHHHHHHHhc
Confidence 5678888888777765532 5666777777766665555444444433322 222333334444444332
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHH--HHhhh-ccchhHHHHHHHHHHHH
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK--EVRRL-DDKLLLVDIDLLESKLH 177 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~--e~~~~-~~~~~~~e~~l~~~~~~ 177 (422)
. .+.-++=+...+...+.|+-.++ +||++|.+.+++++|+..+..-++ ++.+. +|...+.-+.| ++.+
T Consensus 447 ~-~~eAiKCykrai~~~dte~~~l~------~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fL--A~~f 517 (559)
T KOG1155|consen 447 R-LEEAIKCYKRAILLGDTEGSALV------RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFL--AEYF 517 (559)
T ss_pred c-HHHHHHHHHHHHhccccchHHHH------HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHH--HHHH
Confidence 2 23335556666665555665555 899999999999999999888765 23332 34455555554 5688
Q ss_pred HhhCCHHHHHHHHHHH
Q 014555 178 FSLRNLPKAKAALTAA 193 (422)
Q Consensus 178 ~~~~n~~kak~~l~~a 193 (422)
...+|+.+|..+.+.+
T Consensus 518 ~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 518 KKMKDFDEASYYATLV 533 (559)
T ss_pred HhhcchHHHHHHHHHH
Confidence 8999999997765544
No 86
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=91.85 E-value=9.9 Score=34.66 Aligned_cols=95 Identities=11% Similarity=0.108 Sum_probs=67.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH-HHhhCC--HHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL-HFSLRN--LPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~-~~~~~n--~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
.|+.+|...|++++|...+.....- ++. ..+++...+.+ +...|+ ..+|...++++...... ++
T Consensus 78 ~Lg~~~~~~g~~~~A~~a~~~Al~l----~P~--~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~---~~---- 144 (198)
T PRK10370 78 LLGEYYLWRNDYDNALLAYRQALQL----RGE--NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN---EV---- 144 (198)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC---Ch----
Confidence 7899999999999999988876532 221 23444444554 456666 58999999988766322 11
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
.....-|..++..|+|.+|..+|-.+.+.-.
T Consensus 145 ~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 145 TALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 2335578888899999999999988876444
No 87
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=91.82 E-value=10 Score=34.66 Aligned_cols=169 Identities=14% Similarity=0.050 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
|..+.+.+.+..+++.|+|+.-.+.++.+...++ .+.... +
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P----------------------~s~~a~-------------~---- 43 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYP----------------------NSPYAP-------------Q---- 43 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-T----------------------TSTTHH-------------H----
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC----------------------CChHHH-------------H----
Confidence 6677888899999999999888877776665433 221000 0
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH---h---hCCHHHHHHHHHHHHHhhc
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF---S---LRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~---~---~~n~~kak~~l~~a~~~~~ 198 (422)
+ ...+|..+...|+|.+|...++..+..-..+.. ...+.+..-.+.+.. . ..|...++..+...+.+..
T Consensus 44 --A--~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~ 118 (203)
T PF13525_consen 44 --A--QLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-ADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIK 118 (203)
T ss_dssp --H--HHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-HHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-hhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHH
Confidence 1 336777888889999999888888765443321 111111111111111 1 3455555555555555544
Q ss_pred cCCCCchhh-------------HHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHH
Q 014555 199 AIYVPPAQQ-------------GTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIM 259 (422)
Q Consensus 199 ~i~~~~~i~-------------a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL 259 (422)
..|..+... +.-...-|.++...+.|..|...|-.+.++|.. .+..-.++.+++-+-..
T Consensus 119 ~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~--t~~~~~al~~l~~~y~~ 190 (203)
T PF13525_consen 119 RYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPD--TPAAEEALARLAEAYYK 190 (203)
T ss_dssp H-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTT--SHHHHHHHHHHHHHHHH
T ss_pred HCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC--CchHHHHHHHHHHHHHH
Confidence 443222221 222245788899999999999999999999974 35555666666655543
No 88
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.57 E-value=27 Score=39.21 Aligned_cols=214 Identities=10% Similarity=0.020 Sum_probs=121.7
Q ss_pred CChHHHHHHHHhhcCCCCC-c-hHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhh
Q 014555 20 SNPSDAISMLYRVLDDPSS-S-SEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVA 97 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~-~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~ 97 (422)
.++++|...+......... + .++......+...++.++...|+++.............+.- -....-.....+..+.
T Consensus 423 g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~a~~~lg~~~ 501 (903)
T PRK04841 423 HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLT-WYYSRIVATSVLGEVH 501 (903)
T ss_pred CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHHHH
Confidence 3567777766655432111 0 00111223333446777888999999888777655422211 1111111112222222
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD--KLLLVDIDLLESK 175 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~--~~~~~e~~l~~~~ 175 (422)
...+..+.-...+...+..+...+..+........++.++...|++++|...+.+.+.-...... ......++.....
T Consensus 502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~ 581 (903)
T PRK04841 502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ 581 (903)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 12222233355666666665433333332223568899999999999999998887655443221 1111222334567
Q ss_pred HHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 176 LHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 176 ~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
++...|++..|...+..+........ + .........-|.++...+++..|...+-++..
T Consensus 582 ~~~~~G~~~~A~~~~~~al~~~~~~~-~-~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 582 LLWEWARLDEAEQCARKGLEVLSNYQ-P-QQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHhcCHHHHHHHHHHhHHhhhccC-c-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 78889999999999988877654433 2 22333444577788899999999888776644
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=91.54 E-value=11 Score=41.67 Aligned_cols=172 Identities=13% Similarity=0.126 Sum_probs=106.3
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh-cc-------------cchhHHH
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF-SL-------------IPKAKTA 86 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~-------------~~k~~~~ 86 (422)
+...|.+.|+.+....+.+ +.+|....+...++.+...++-+...+.+..-.... +. +......
T Consensus 256 ~~~~Am~~f~~l~~~~p~~--d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d 333 (895)
T KOG2076|consen 256 DLKRAMETFLQLLQLDPPV--DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSD 333 (895)
T ss_pred hHHHHHHHHHHHHhhCCch--hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHH
Confidence 4689999999998876533 367888888888888877766544433222111111 10 1133445
Q ss_pred HHHHHHHHHhh------------------------cCCCChhHHHHHHHHHHHHHH--------------hcchhHH--h
Q 014555 87 KIVRGIIDAVA------------------------KIPGTSELQIALCKEMVQWTR--------------AEKRTFL--R 126 (422)
Q Consensus 87 k~v~~~l~~~~------------------------~~~~~~~~~~~l~~~~i~~~~--------------~~~r~~l--r 126 (422)
+..+.+.+... .+|+.....+.+|...+--.. -+.-.|+ .
T Consensus 334 ~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~ 413 (895)
T KOG2076|consen 334 KALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDD 413 (895)
T ss_pred HhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhh
Confidence 66666666554 122211111222111111110 0112233 3
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
.-|-..+|+.|.+.|.|.+|+.++..|... +......++....++|+.+|.+..|..+|.++......
T Consensus 414 ~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~ 481 (895)
T KOG2076|consen 414 VDLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPD 481 (895)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence 345568999999999999999999988632 33334778888999999999999999999998877644
No 90
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=91.45 E-value=29 Score=39.80 Aligned_cols=91 Identities=10% Similarity=0.097 Sum_probs=40.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.++.++.+.|++++|...+...+.- ++.. .+.+..-..++...|++..|...+.++.... |.- ..+.
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~l----~Pd~--~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~------P~~-~~a~ 680 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALEL----EPNN--SNYQAALGYALWDSGDIAQSREMLERAHKGL------PDD-PALI 680 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCC-HHHH
Confidence 4455555555555555555544321 1111 1222222334444555555555555554431 110 1223
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
..-|..+...|++..|..+|-.++
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al 704 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVI 704 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334555555555555555555554
No 91
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=91.44 E-value=0.19 Score=40.81 Aligned_cols=38 Identities=21% Similarity=0.323 Sum_probs=35.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
.=|++++|++.|+++.++|+..|-.|+.+|.|+-.||.
T Consensus 64 ~Gv~v~~I~~~l~~~~~~v~~al~~L~~eG~IYsTiDd 101 (102)
T PF08784_consen 64 EGVHVDEIAQQLGMSENEVRKALDFLSNEGHIYSTIDD 101 (102)
T ss_dssp TTEEHHHHHHHSTS-HHHHHHHHHHHHHTTSEEESSST
T ss_pred CcccHHHHHHHhCcCHHHHHHHHHHHHhCCeEecccCC
Confidence 46999999999999999999999999999999999995
No 92
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=91.17 E-value=12 Score=40.93 Aligned_cols=88 Identities=13% Similarity=-0.060 Sum_probs=48.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
-+++.|...|++++|.+++.+.. ..+ -..++-.-+..|...||+..++.+.+....+ .|.-.+. +
T Consensus 467 ~li~~l~r~G~~~eA~~~~~~~~------~~p--~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~------~p~~~~~-y 531 (697)
T PLN03081 467 CMIELLGREGLLDEAYAMIRRAP------FKP--TVNMWAALLTACRIHKNLELGRLAAEKLYGM------GPEKLNN-Y 531 (697)
T ss_pred hHHHHHHhcCCHHHHHHHHHHCC------CCC--CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC------CCCCCcc-h
Confidence 46677777788888877665421 111 1122333455677778887777766554322 1221112 2
Q ss_pred HHHHHHhchhhcHHHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
..-+.+|...|+|.+|...|-+.
T Consensus 532 ~~L~~~y~~~G~~~~A~~v~~~m 554 (697)
T PLN03081 532 VVLLNLYNSSGRQAEAAKVVETL 554 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHH
Confidence 23344566777777777665543
No 93
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=90.99 E-value=2.5 Score=42.44 Aligned_cols=92 Identities=16% Similarity=0.148 Sum_probs=69.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
..|.-++..|+|.+|++.+...+.. ++. ..+.+...+.+++..|++..|...+.++..+.. .. +...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~----~P~--~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~-~~a~ 73 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL----DPN--NAELYADRAQANIKLGNFTEAVADANKAIELDP------SL-AKAY 73 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CC-HHHH
Confidence 5677788999999999999888753 221 235566778899999999999999888876532 21 2234
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...|.++...|+|..|...|-.+..
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~ 98 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGAS 98 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4568888899999999999988865
No 94
>PRK12370 invasion protein regulator; Provisional
Probab=90.63 E-value=20 Score=38.16 Aligned_cols=92 Identities=11% Similarity=-0.015 Sum_probs=56.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++.++...|++++|...+...+.- ++... ........+++..|++.+|...+.++.... +|.. ...
T Consensus 376 ~~lg~~l~~~G~~~eAi~~~~~Al~l----~P~~~--~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~-~~~ 443 (553)
T PRK12370 376 YYYGWNLFMAGQLEEALQTINECLKL----DPTRA--AAGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDN-PIL 443 (553)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCh--hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccC-HHH
Confidence 36788888999999998888876532 22111 111112234556788888888777654331 1111 112
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHH
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
...-|.++...|++.+|...|-..
T Consensus 444 ~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 444 LSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHh
Confidence 344577777889999888877554
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=90.42 E-value=0.99 Score=32.90 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=43.3
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
...++++|++.|..++...+.+. .+...++.++++.|++++-.+.+..+....+
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~-------~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNP-------EARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSH-------HHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hccCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 44568999999999998766443 2666899999999999999999998887554
No 96
>KOG3054 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=0.61 Score=43.37 Aligned_cols=57 Identities=12% Similarity=0.242 Sum_probs=51.4
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-++.|++.-+.|.|.+||..|||-.+++-..+-.++.+|.|.|.||--.+.|.++..
T Consensus 204 eFv~YIk~nKvV~ledLas~f~Lrtqd~inriq~~l~eg~ltGVmDDRGKfIYIS~e 260 (299)
T KOG3054|consen 204 EFVEYIKKNKVVPLEDLASEFGLRTQDSINRIQELLAEGLLTGVMDDRGKFIYISME 260 (299)
T ss_pred HHHHHHHhcCeeeHHHHHHHhCccHHHHHHHHHHHHHhhhheeeecCCCceEEecHH
Confidence 345677778999999999999999999999999999999999999999999999753
No 97
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=90.22 E-value=2.6 Score=41.02 Aligned_cols=203 Identities=13% Similarity=0.132 Sum_probs=110.1
Q ss_pred hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHh
Q 014555 17 KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAV 96 (422)
Q Consensus 17 ~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~ 96 (422)
+--.+...+|.... +... +++ .......-+..-+...|+++....-+..-. +-.-+.|+.+.+++
T Consensus 12 fy~G~Y~~~i~e~~-~~~~--~~~----~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~--------~~~l~av~~la~y~ 76 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSF--SPE----NKLERDFYQYRSYIALGQYDSVLSEIKKSS--------SPELQAVRLLAEYL 76 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTS--TCH----HHHHHHHHHHHHHHHTT-HHHHHHHS-TTS--------SCCCHHHHHHHHHH
T ss_pred HHhhhHHHHHHHhh-ccCC--Cch----hHHHHHHHHHHHHHHcCChhHHHHHhccCC--------ChhHHHHHHHHHHH
Confidence 33445667775555 2222 222 223344456667777887765443332211 11123456666766
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhc-c--hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAE-K--RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLE 173 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~-~--r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~ 173 (422)
. .|+. +-..+..+.++.... + --++ .+-.|.++...|++++|++++... .-+|..+..
T Consensus 77 ~-~~~~---~e~~l~~l~~~~~~~~~~~~~~~----~~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~ 137 (290)
T PF04733_consen 77 S-SPSD---KESALEELKELLADQAGESNEIV----QLLAATILFHEGDYEEALKLLHKG-----------GSLELLALA 137 (290)
T ss_dssp C-TSTT---HHCHHHHHHHCCCTS---CHHHH----HHHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHH
T ss_pred h-Cccc---hHHHHHHHHHHHHhccccccHHH----HHHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHH
Confidence 5 3432 222333333332111 1 1122 346778888899999998766541 346888888
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh--hcHHHHHHHHHHHhhhhhccCChhHHHHHH
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE--KDYKTAYSYFFEAFEAFNALEDPRAVFSLK 251 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~--~dy~~A~~~f~ea~~~~~~~~~~~~~~~lk 251 (422)
+++++..+.++.|+..+...+.+.. + .+ ....+.+.+.+.. .+|.+|+..|-|....|... ...+-
T Consensus 138 Vqi~L~~~R~dlA~k~l~~~~~~~e----D-~~--l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t-----~~~ln 205 (290)
T PF04733_consen 138 VQILLKMNRPDLAEKELKNMQQIDE----D-SI--LTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGST-----PKLLN 205 (290)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHCCSC----C-HH--HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--S-----HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCC----c-HH--HHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCC-----HHHHH
Confidence 9999999999999988877655421 2 22 2234555555544 36888888888877766421 22233
Q ss_pred HHHHHHHHhcCccc
Q 014555 252 YMLLCKIMVSQADD 265 (422)
Q Consensus 252 y~vL~~lL~~~~~e 265 (422)
-+.+|.|..++-++
T Consensus 206 g~A~~~l~~~~~~e 219 (290)
T PF04733_consen 206 GLAVCHLQLGHYEE 219 (290)
T ss_dssp HHHHHHHHCT-HHH
T ss_pred HHHHHHHHhCCHHH
Confidence 45566666655444
No 98
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=90.09 E-value=1.9 Score=31.55 Aligned_cols=59 Identities=14% Similarity=0.169 Sum_probs=48.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR-NLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~-n~~kak~~l~~a~~~ 196 (422)
.+|..+...|+|++|+..+...+.- ++. -.+++.....++...| ++.+|...++++..+
T Consensus 8 ~~g~~~~~~~~~~~A~~~~~~ai~~----~p~--~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 8 NLGQIYFQQGDYEEAIEYFEKAIEL----DPN--NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHH----STT--HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 7899999999999999999887643 222 3557777888999999 799999999888765
No 99
>COG3355 Predicted transcriptional regulator [Transcription]
Probab=89.72 E-value=3.9 Score=34.57 Aligned_cols=81 Identities=14% Similarity=0.234 Sum_probs=63.9
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee-eee-cCCCEEEEecCCchhhHH----HHHHHHHHHHHH
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG-TLD-QGVGCLIIFEDPKADAIY----PATLETISNMGK 408 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g-kID-q~~g~v~~~~~~~~~~~~----~~l~~~~~~l~~ 408 (422)
..++++-.-.+.++||+.++.+..-|.+-|-+++.-|.+.= +.. ...|...++.+.+.+++. ..+.+|..++.+
T Consensus 34 ~~LL~~~~~~tvdelae~lnr~rStv~rsl~~L~~~GlV~Rek~~~~~Ggy~yiY~~i~~ee~k~~i~~~l~~w~~~~~~ 113 (126)
T COG3355 34 KALLEENGPLTVDELAEILNRSRSTVYRSLQNLLEAGLVEREKVNLKGGGYYYLYKPIDPEEIKKKILKDLDEWYDKMKQ 113 (126)
T ss_pred HHHHhhcCCcCHHHHHHHHCccHHHHHHHHHHHHHcCCeeeeeeccCCCceeEEEecCCHHHHHHHHHHHHHHHHHHHHH
Confidence 33444556788999999999999999999999999999964 444 677888998777765543 567789999999
Q ss_pred HHHHHHH
Q 014555 409 VVDSLFV 415 (422)
Q Consensus 409 l~~~l~~ 415 (422)
.+.....
T Consensus 114 ~i~~~~~ 120 (126)
T COG3355 114 LIEEFEK 120 (126)
T ss_pred HHHHHhc
Confidence 8876543
No 100
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=89.57 E-value=1.3 Score=32.31 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=39.3
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
+++.|+|++|.+.+++++..-. . -.++.+.-+++++..|++.+|+..+.+...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p----~--~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNP----D--NPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTT----T--SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHCC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3578999999999999875422 1 344555568899999999999988875544
No 101
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=89.45 E-value=13 Score=40.68 Aligned_cols=190 Identities=11% Similarity=0.007 Sum_probs=95.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
..+.++|.+.|..+.+.+ .. +...++..|++.|++++..+++..+... + +..... ....++..+.+
T Consensus 272 ~g~~~~A~~vf~~m~~~~-----~v-----t~n~li~~y~~~g~~~eA~~lf~~M~~~-g-~~pd~~--t~~~ll~a~~~ 337 (697)
T PLN03081 272 CGDIEDARCVFDGMPEKT-----TV-----AWNSMLAGYALHGYSEEALCLYYEMRDS-G-VSIDQF--TFSIMIRIFSR 337 (697)
T ss_pred CCCHHHHHHHHHhCCCCC-----hh-----HHHHHHHHHHhCCCHHHHHHHHHHHHHc-C-CCCCHH--HHHHHHHHHHh
Confidence 336899999998775431 12 3446888999999999999888887542 1 211111 23334443332
Q ss_pred CCCChhHHHHHHHHHHHH----------------HH-----hcchhHHhh-----HHHHHHHHHHHhcccHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQW----------------TR-----AEKRTFLRQ-----RVEARLAALLMESREYTEALTLLTS 152 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~----------------~~-----~~~r~~lr~-----~l~~~La~~~~~~g~~~~A~~~l~~ 152 (422)
... .+.-.++....++. ++ ...++|-+. ..=..++..|...|+.++|.+++.+
T Consensus 338 ~g~-~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~ 416 (697)
T PLN03081 338 LAL-LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFER 416 (697)
T ss_pred ccc-hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHH
Confidence 211 01111122211110 00 000111000 0011455666666777777776666
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHH
Q 014555 153 LVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 153 l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ 232 (422)
+...-..++ ...+..-+..|...|++.++..++....... .+ .|.. ..+.+-..++...|++.+|...|-
T Consensus 417 M~~~g~~Pd-----~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~-g~--~p~~--~~y~~li~~l~r~G~~~eA~~~~~ 486 (697)
T PLN03081 417 MIAEGVAPN-----HVTFLAVLSACRYSGLSEQGWEIFQSMSENH-RI--KPRA--MHYACMIELLGREGLLDEAYAMIR 486 (697)
T ss_pred HHHhCCCCC-----HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc-CC--CCCc--cchHhHHHHHHhcCCHHHHHHHHH
Confidence 654321111 1123333456777888888888777654321 12 2222 123444455667788888876654
Q ss_pred H
Q 014555 233 E 233 (422)
Q Consensus 233 e 233 (422)
+
T Consensus 487 ~ 487 (697)
T PLN03081 487 R 487 (697)
T ss_pred H
Confidence 4
No 102
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=89.24 E-value=9.1 Score=36.72 Aligned_cols=97 Identities=9% Similarity=0.176 Sum_probs=65.9
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGI 216 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~ 216 (422)
+...|+|.+|...++.++..-.. ..+.-+.+.....+|+..|++..|...+...-+. .+.+|..--.+. .-|.
T Consensus 153 ~~~~~~y~~Ai~af~~fl~~yP~---s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~---yP~s~~~~dAl~-klg~ 225 (263)
T PRK10803 153 VQDKSRQDDAIVAFQNFVKKYPD---STYQPNANYWLGQLNYNKGKKDDAAYYFASVVKN---YPKSPKAADAMF-KVGV 225 (263)
T ss_pred HHhcCCHHHHHHHHHHHHHHCcC---CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCcchhHHHH-HHHH
Confidence 45569999999998888754322 2233345556678999999999998887655432 222223322222 2456
Q ss_pred HhchhhcHHHHHHHHHHHhhhhhc
Q 014555 217 LHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 217 ~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
++...+++..|...|-...+.|..
T Consensus 226 ~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 226 IMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCcC
Confidence 666789999999999988888864
No 103
>PRK15431 ferrous iron transport protein FeoC; Provisional
Probab=88.94 E-value=0.83 Score=35.11 Aligned_cols=52 Identities=23% Similarity=0.323 Sum_probs=43.6
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
.++.++.-+.+++...||..|+.|++-||.+|.+++.-|++.-.-....|+.
T Consensus 6 qlRd~l~~~gr~s~~~Ls~~~~~p~~~VeaMLe~l~~kGkverv~~~~~gC~ 57 (78)
T PRK15431 6 QVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCL 57 (78)
T ss_pred HHHHHHHHcCcccHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccCCCCCC
Confidence 4666777889999999999999999999999999999999975543444554
No 104
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=88.71 E-value=3.3 Score=30.13 Aligned_cols=62 Identities=16% Similarity=0.150 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhh-cHHHHHHHHHHHhh
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEK-DYKTAYSYFFEAFE 236 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~-dy~~A~~~f~ea~~ 236 (422)
+++......++..|++.+|...++++.... |. ...+...-|..+...+ +|..|..+|-.+..
T Consensus 4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~------p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELD------PN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHHHHHHHS------TT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 456677889999999999999999887762 22 2345566788888888 89999998887754
No 105
>PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A ....
Probab=88.58 E-value=1.1 Score=30.78 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=35.0
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
+..++.++.--..++..+||+.+|+|..-|-..+-+|...|.|.
T Consensus 5 ~~~Il~~l~~~~~~t~~ela~~~~is~~tv~~~l~~L~~~g~I~ 48 (48)
T PF13412_consen 5 QRKILNYLRENPRITQKELAEKLGISRSTVNRYLKKLEEKGLIE 48 (48)
T ss_dssp HHHHHHHHHHCTTS-HHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCcCcC
Confidence 34555666556679999999999999999999999999999763
No 106
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=88.51 E-value=14 Score=31.30 Aligned_cols=78 Identities=23% Similarity=0.181 Sum_probs=51.2
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc---c
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN---A 199 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~---~ 199 (422)
.|+.. -.+++..+...|++++|...+..++.. ++-... ++..-++.+...|+...|...|...+.... .
T Consensus 60 ~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~--~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg 131 (146)
T PF03704_consen 60 LYLDA--LERLAEALLEAGDYEEALRLLQRALAL----DPYDEE--AYRLLMRALAAQGRRAEALRVYERYRRRLREELG 131 (146)
T ss_dssp HHHHH--HHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HH--HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHH--HHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHH--HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhC
Confidence 44444 568999999999999999988887642 332222 444458899999999999999998865543 2
Q ss_pred CCCCchhhH
Q 014555 200 IYVPPAQQG 208 (422)
Q Consensus 200 i~~~~~i~a 208 (422)
+...|.+.+
T Consensus 132 ~~Ps~~~~~ 140 (146)
T PF03704_consen 132 IEPSPETRA 140 (146)
T ss_dssp ----HHHHH
T ss_pred cCcCHHHHH
Confidence 332444443
No 107
>smart00550 Zalpha Z-DNA-binding domain in adenosine deaminases. Helix-turn-helix-containing domain. Also known as Zab.
Probab=88.51 E-value=0.98 Score=33.80 Aligned_cols=45 Identities=18% Similarity=0.262 Sum_probs=37.9
Q ss_pred HHHHHHhhccccc--ccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 331 EQNLCRLIEPYSR--VEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 331 ~~~l~~i~~pYs~--I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
+..|+.++...-. ++..+||+.+|++...|.+.|.+|...|.+.-
T Consensus 8 ~~~IL~~L~~~g~~~~ta~eLa~~lgl~~~~v~r~L~~L~~~G~V~~ 54 (68)
T smart00550 8 EEKILEFLENSGDETSTALQLAKNLGLPKKEVNRVLYSLEKKGKVCK 54 (68)
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4556666665544 99999999999999999999999999998854
No 108
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=88.45 E-value=36 Score=36.79 Aligned_cols=117 Identities=23% Similarity=0.184 Sum_probs=73.5
Q ss_pred hHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 127 QRVEARLAALLME-SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 127 ~~l~~~La~~~~~-~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
+++..++|.++++ ..++++|-..|++-..-+....--.++..+...-++++...+-.. |+..++++-....... +..
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~-~~~ 136 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYG-HSA 136 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccC-chh
Confidence 3446699999885 678999999888665444442112345555556688888877666 8888877655444422 223
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChh
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPR 245 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~ 245 (422)
..-.++.....+++..+|+..|...+-.........+++.
T Consensus 137 w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 137 WYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 3334444444444444899999988877766554445553
No 109
>PF08220 HTH_DeoR: DeoR-like helix-turn-helix domain; InterPro: IPR001034 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism. This family of prokaryotic regulators is named after the Escherichia coli protein DeoR, a repressor of the deo operon, which encodes nucleotide and deoxyribonucleotide catabolic enzymes. DeoR also negatively regulates the expression of nupG and tsx, a nucleoside-specific transport protein and a channel-forming protein, respectively. DeoR-like transcription repressors occur in diverse bacteria as regulators of sugar and nucleoside metabolic systems. The effector molecules for deoR-like regulators are generally phosphorylated intermediates of the relevant metabolic pathway. The DNA-binding deoR-type HTH domain occurs usually in the N-terminal part. The C-terminal part can contain an effector-binding domain and/or an oligomerisation domain. DeoR occurs as an octamer, whilst glpR and agaR are tetramers. Several operators may be bound simultaneously, which could facilitate DNA looping [, ].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular
Probab=87.92 E-value=1.5 Score=31.50 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=42.7
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
...|+.+++....++++++|+.||+|+.-+.+.+..|-..|. |.+..|-+.+
T Consensus 2 ~~~Il~~l~~~~~~s~~ela~~~~VS~~TiRRDl~~L~~~g~----i~r~~GG~~~ 53 (57)
T PF08220_consen 2 QQQILELLKEKGKVSVKELAEEFGVSEMTIRRDLNKLEKQGL----IKRTHGGAVL 53 (57)
T ss_pred HHHHHHHHHHcCCEEHHHHHHHHCcCHHHHHHHHHHHHHCCC----EEEEcCEEEe
Confidence 356777888889999999999999999999999999999886 4455554444
No 110
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=87.78 E-value=34 Score=34.73 Aligned_cols=186 Identities=11% Similarity=0.043 Sum_probs=107.5
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHH-HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALR-VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
.+.++|++.|..+.+....+++... ...++...+........+.+.+.+....+......-+ .++-.....+..
T Consensus 201 gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~-----~~~~~~A~~l~~ 275 (398)
T PRK10747 201 GAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQV-----ALQVAMAEHLIE 275 (398)
T ss_pred HhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCH-----HHHHHHHHHHHH
Confidence 3678899888888886543333333 3335555666666666677777777777665433221 111222222222
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHH--HhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALL--MESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~--~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
..+ .+.-.+++...... . | .-.++.+| +..|+++++++.+++.++. .+++ .+..+...++
T Consensus 276 ~g~-~~~A~~~L~~~l~~---~---~-----~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~~----~~l~l~lgrl 337 (398)
T PRK10747 276 CDD-HDTAQQIILDGLKR---Q---Y-----DERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGDT----PLLWSTLGQL 337 (398)
T ss_pred CCC-HHHHHHHHHHHHhc---C---C-----CHHHHHHHhhccCCChHHHHHHHHHHHhh--CCCC----HHHHHHHHHH
Confidence 222 12223444433331 1 1 11333333 3458999999888887643 1222 2455666899
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
|+..+++.+|+..++.+.... |.-.. ...-+..+...|+-..|..+|-++..
T Consensus 338 ~~~~~~~~~A~~~le~al~~~------P~~~~--~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 338 LMKHGEWQEASLAFRAALKQR------PDAYD--YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcC------CCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999999887652 22211 23456666677888888888877743
No 111
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=87.06 E-value=18 Score=32.89 Aligned_cols=125 Identities=10% Similarity=0.040 Sum_probs=79.0
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHH-HhhcC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIID-AVAKI 99 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~-~~~~~ 99 (422)
+.++++..|...++.++.+.+ +...++.++...|+++...+.+.......+.-+.... ..-. .+...
T Consensus 54 ~~~~~i~~l~~~L~~~P~~~~-------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~-----~lA~aL~~~~ 121 (198)
T PRK10370 54 TPEAQLQALQDKIRANPQNSE-------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYA-----ALATVLYYQA 121 (198)
T ss_pred hHHHHHHHHHHHHHHCCCCHH-------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHhc
Confidence 468899999998887765432 5667899999999999999999888765543211111 1111 11111
Q ss_pred CCC-hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccc
Q 014555 100 PGT-SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK 163 (422)
Q Consensus 100 ~~~-~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~ 163 (422)
... .+.-.+++++.++.-.+ ..+. -..||..+...|+|++|...++.++......+++
T Consensus 122 g~~~~~~A~~~l~~al~~dP~----~~~a--l~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r 180 (198)
T PRK10370 122 GQHMTPQTREMIDKALALDAN----EVTA--LMLLASDAFMQADYAQAIELWQKVLDLNSPRVNR 180 (198)
T ss_pred CCCCcHHHHHHHHHHHHhCCC----ChhH--HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccH
Confidence 111 12334555555553222 2233 3488999999999999999999987654433333
No 112
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=86.73 E-value=55 Score=37.56 Aligned_cols=91 Identities=10% Similarity=-0.001 Sum_probs=63.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...++.++.+.|++++|.+.+...+.. .+. ..+++..-..++...|++..|...++++.... |. .+.
T Consensus 646 ~~nLG~aL~~~G~~eeAi~~l~~AL~l----~P~--~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~------P~-~a~ 712 (987)
T PRK09782 646 QAALGYALWDSGDIAQSREMLERAHKG----LPD--DPALIRQLAYVNQRLDDMAATQHYARLVIDDI------DN-QAL 712 (987)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CC-Cch
Confidence 448899999999999999998887642 221 23445556778899999999999999886653 21 234
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFE 233 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~e 233 (422)
+....|.+...+.+|..|.+.+--
T Consensus 713 i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 713 ITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666654443
No 113
>PRK11189 lipoprotein NlpI; Provisional
Probab=86.41 E-value=33 Score=33.22 Aligned_cols=150 Identities=13% Similarity=0.014 Sum_probs=83.1
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
..+.+|..|..++.....+.+ ..-+.....+.++...|+++.-...+.......+..+.+.. .+-..+...
T Consensus 41 ~~e~~i~~~~~~l~~~~~~~~---~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~-----~lg~~~~~~- 111 (296)
T PRK11189 41 QQEVILARLNQILASRDLTDE---ERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYN-----YLGIYLTQA- 111 (296)
T ss_pred HHHHHHHHHHHHHccccCCcH---hhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHC-
Confidence 357899999888865432222 33456778888999999999888777777664443322221 111111111
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
+..+.-++.++..++.-.+....| ..++.++...|++++|++.+...+.. .+++.. ... -..++...
T Consensus 112 g~~~~A~~~~~~Al~l~P~~~~a~------~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~---~~~--~~~l~~~~ 178 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDPTYNYAY------LNRGIALYYGGRYELAQDDLLAFYQD--DPNDPY---RAL--WLYLAESK 178 (296)
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH---HHH--HHHHHHcc
Confidence 112222444444444321111222 37788888899999998888877642 112221 111 11233345
Q ss_pred CCHHHHHHHHHH
Q 014555 181 RNLPKAKAALTA 192 (422)
Q Consensus 181 ~n~~kak~~l~~ 192 (422)
++..+|...+.+
T Consensus 179 ~~~~~A~~~l~~ 190 (296)
T PRK11189 179 LDPKQAKENLKQ 190 (296)
T ss_pred CCHHHHHHHHHH
Confidence 677777776654
No 114
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.41 E-value=45 Score=34.75 Aligned_cols=129 Identities=19% Similarity=0.186 Sum_probs=84.2
Q ss_pred HHHHHHHHHh-cccHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhhccCCCCch
Q 014555 130 EARLAALLME-SREYTEALTLLTSLVKEVRRLDDK--LLLVDIDLLESKLHFSLR-NLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 130 ~~~La~~~~~-~g~~~~A~~~l~~l~~e~~~~~~~--~~~~e~~l~~~~~~~~~~-n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
.++|+.+++. ..+++-|-..|+.-..-.+. .+. ..+.+-+..-+.+|+... +++.+|+.+.+|-.++... |.
T Consensus 49 ~LqLg~lL~~yT~N~elAksHLekA~~i~~~-ip~fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaielsq~~---p~ 124 (629)
T KOG2300|consen 49 HLQLGALLLRYTKNVELAKSHLEKAWLISKS-IPSFYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIELSQSV---PY 124 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHcc-cccHHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCC---ch
Confidence 5588888776 44666676666554222111 111 346666777778888777 9999999999998887664 37
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCc
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQA 263 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~ 263 (422)
+...+-.+-+-.|..++||..|.+.+--.++.-+... ....++++-++-.-++...+
T Consensus 125 wsckllfQLaql~~idkD~~sA~elLavga~sAd~~~-~~ylr~~ftls~~~ll~me~ 181 (629)
T KOG2300|consen 125 WSCKLLFQLAQLHIIDKDFPSALELLAVGAESADHIC-FPYLRMLFTLSMLMLLIMER 181 (629)
T ss_pred hhHHHHHHHHHHHhhhccchhHHHHHhccccccchhh-hHHHHHHHHHHHHHHHHhCc
Confidence 7788888888999999999999976332233333222 23445555555555555444
No 115
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=86.31 E-value=9.2 Score=38.95 Aligned_cols=93 Identities=18% Similarity=0.145 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...+|+++...++..+|..++.+.+.+.. .+ .++...+++.++..+++..|.....+|-..+-. ....=
T Consensus 203 ~~~LA~v~l~~~~E~~AI~ll~~aL~~~p--~d----~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~-----~f~~W 271 (395)
T PF09295_consen 203 AVLLARVYLLMNEEVEAIRLLNEALKENP--QD----SELLNLQAEFLLSKKKYELALEIAKKAVELSPS-----EFETW 271 (395)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCch-----hHHHH
Confidence 44789999998999999999988874422 12 666677899999999998887776666554322 22211
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-+..|...+||+.|. .-..++.
T Consensus 272 --~~La~~Yi~~~d~e~AL-laLNs~P 295 (395)
T PF09295_consen 272 --YQLAECYIQLGDFENAL-LALNSCP 295 (395)
T ss_pred --HHHHHHHHhcCCHHHHH-HHHhcCc
Confidence 22456677888999887 4455543
No 116
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=86.21 E-value=12 Score=33.01 Aligned_cols=64 Identities=9% Similarity=-0.034 Sum_probs=49.1
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee-e-eecCCCEEEEecCCchhhHHHHHHHHH
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG-T-LDQGVGCLIIFEDPKADAIYPATLETI 403 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g-k-IDq~~g~v~~~~~~~~~~~~~~l~~~~ 403 (422)
..+-++-++||+.+|++..+|-+.|-+|-.+|.+.- + =|...|.....|.-+..+..+.+..-.
T Consensus 25 ~~~~~tdEeLa~~Lgi~~~~VRk~L~~L~e~~Lv~~~r~r~~~~gw~~Y~w~i~~~~i~d~Ik~~~ 90 (158)
T TIGR00373 25 IKGEFTDEEISLELGIKLNEVRKALYALYDAGLADYKRRKDDETGWYEYTWRINYEKALDVLKRKL 90 (158)
T ss_pred ccCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCceeeeeeecCCCcEEEEEEeCHHHHHHHHHHHH
Confidence 456799999999999999999999999999999953 2 255667788887656555555444333
No 117
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=86.13 E-value=9.2 Score=34.44 Aligned_cols=93 Identities=13% Similarity=0.124 Sum_probs=63.1
Q ss_pred hhcChhHHHhHHHHHH--HHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeee--ecCCCEEEEe
Q 014555 312 LEEDPIVHRHLSSLYD--TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL--DQGVGCLIIF 387 (422)
Q Consensus 312 l~~D~~l~~~~~~L~~--~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkI--Dq~~g~v~~~ 387 (422)
+..||.++..+..+.. .- -..++..+.....+|-++||+.+|++..+|-+.|.+|-.+|.+..+- |...|.....
T Consensus 4 ~~~~~~v~~~l~~~~~~~~~-~~~Vl~~L~~~g~~tdeeLA~~Lgi~~~~VRk~L~~L~e~gLv~~~r~r~~~~Gr~~y~ 82 (178)
T PRK06266 4 MLNNPLVQKVLFEIMEGDEE-GFEVLKALIKKGEVTDEEIAEQTGIKLNTVRKILYKLYDARLADYKREKDEETNWYTYT 82 (178)
T ss_pred hhcCHHHHHHHHHHhcCCcc-HhHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEEeeeeccCCCcEEEE
Confidence 3477877654444441 11 12234444556789999999999999999999999999999997533 4357778887
Q ss_pred cCCchhhHHHHHHHHHHH
Q 014555 388 EDPKADAIYPATLETISN 405 (422)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~ 405 (422)
|.-+.....+.+..-...
T Consensus 83 w~l~~~~i~d~ik~~~~~ 100 (178)
T PRK06266 83 WKPELEKLPEIIKKKKME 100 (178)
T ss_pred EEeCHHHHHHHHHHHHHH
Confidence 876655555554433333
No 118
>PRK14574 hmsH outer membrane protein; Provisional
Probab=86.02 E-value=65 Score=36.22 Aligned_cols=201 Identities=12% Similarity=0.012 Sum_probs=126.7
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCC
Q 014555 22 PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPG 101 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~ 101 (422)
.+.|+..+..++.......+.-....++..-.+-.+...|++.+..+.+..|..--..+ .+++. ..+-|.+.....
T Consensus 267 ~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~-P~y~~---~a~adayl~~~~ 342 (822)
T PRK14574 267 ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKM-PDYAR---RWAASAYIDRRL 342 (822)
T ss_pred HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCC-CHHHH---HHHHHHHHhcCC
Confidence 46788888888864321111112224466666677778889999999999988533223 34543 333444432222
Q ss_pred ChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh-hh--------ccchhHHHHHHH
Q 014555 102 TSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVR-RL--------DDKLLLVDIDLL 172 (422)
Q Consensus 102 ~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~-~~--------~~~~~~~e~~l~ 172 (422)
++.-..++..++.-...........-.+.+|..-|++.|+|++|..+++++..... .. .+..-..+....
T Consensus 343 -P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l 421 (822)
T PRK14574 343 -PEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTL 421 (822)
T ss_pred -cHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHH
Confidence 23446777776553210001111111135889999999999999999999976443 11 123446688888
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
.+.++...||+++|...++.....+ |-++. +....|-++...+.+..|...+-.+
T Consensus 422 ~a~~~~~~gdl~~Ae~~le~l~~~a---P~n~~----l~~~~A~v~~~Rg~p~~A~~~~k~a 476 (822)
T PRK14574 422 LVQSLVALNDLPTAQKKLEDLSSTA---PANQN----LRIALASIYLARDLPRKAEQELKAV 476 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC---CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 8999999999999999988775543 32333 3446777788889999999888444
No 119
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=85.85 E-value=3.8 Score=29.50 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=44.4
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...+.++..|++.+|...+..+... +|. .......-|.++...|+|..|...|-++....
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ------DPD-NPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC------STT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH------CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3567889999999999998877554 223 34455667888889999999998888776543
No 120
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=85.65 E-value=57 Score=35.22 Aligned_cols=197 Identities=16% Similarity=0.133 Sum_probs=113.2
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHH-cccHHHHHHHHHHhchhhc--ccc--hhHHHHHHHHHHHHhh
Q 014555 23 SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQ-ENRAQDLCNLLTQLRPFFS--LIP--KAKTAKIVRGIIDAVA 97 (422)
Q Consensus 23 ~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~l~~~~~~l~~~~~--~~~--k~~~~k~v~~~l~~~~ 97 (422)
..||..|+.+.++..-.. .--.++..+++.++++ ..+.+...+++..-...-. .+. |=..+-+. +..+.
T Consensus 38 ~~ai~CL~~~~~~~~l~p---~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll---~~i~~ 111 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSP---RQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLL---ARIYF 111 (608)
T ss_pred HHHHHHHHHHhccCCCCH---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHH---HHHHH
Confidence 577999999987544322 2346788899999995 6888888777763321111 011 11111122 22222
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcchh-HHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEKRT-FLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~r~-~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
+. + ...-...++..|+.+++.+-. |. --+..-.+.+....+|+..|++.++.+..--....|....+-+.+.+.-+
T Consensus 112 ~~-~-~~~a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 112 KT-N-PKAALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALL 188 (608)
T ss_pred hc-C-HHHHHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHH
Confidence 22 1 122567788888877653222 33 11111224444445899999999999976555456777777777777777
Q ss_pred HHhhCCHHHHHHHHHHH----HHh--hccCCCCchhhHHHHHHHHHHhchhhcHHHHHH
Q 014555 177 HFSLRNLPKAKAALTAA----RTA--ANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYS 229 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a----~~~--~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~ 229 (422)
.+..+....+-..+..+ +.. ..+. .+|.+.+-+-...-.+++..++++.+..
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~-~~~qL~~~~lll~l~~~l~~~~~~~~~~ 246 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSV-HIPQLKALFLLLDLCCSLQQGDVKNSKQ 246 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCC-CcHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 77777665555555544 332 2223 4566665554444445556677666664
No 121
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=85.49 E-value=60 Score=35.39 Aligned_cols=192 Identities=10% Similarity=-0.022 Sum_probs=102.1
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHH
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRG 91 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~ 91 (422)
-+.... ..+++.|+..+..++.......+ ++..++-.+...|+++...+.+..+....+.-+.+. ..
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-------~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~-----~~ 115 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLTAKNGRD-------LLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDV-----LL 115 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHhCCCchh-------HHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHH-----HH
Confidence 344433 44678899988888887654332 566777777788999988888888776544322221 11
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
+-..+....+ .+.-++.++..++.. .+.... ...++.++...|++++|...+..+...-. ++.... .
T Consensus 116 la~~l~~~g~-~~~Ai~~l~~Al~l~--P~~~~a----~~~la~~l~~~g~~~eA~~~~~~~~~~~P--~~~~a~----~ 182 (656)
T PRK15174 116 VASVLLKSKQ-YATVADLAEQAWLAF--SGNSQI----FALHLRTLVLMDKELQAISLARTQAQEVP--PRGDMI----A 182 (656)
T ss_pred HHHHHHHcCC-HHHHHHHHHHHHHhC--CCcHHH----HHHHHHHHHHCCChHHHHHHHHHHHHhCC--CCHHHH----H
Confidence 1111211211 122234444444321 111122 23677778888888888877776543211 111111 1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
. ...++..|++.+|...+..+.... +.++. ......|..+...++|..|...|-.+..
T Consensus 183 ~-~~~l~~~g~~~eA~~~~~~~l~~~---~~~~~---~~~~~l~~~l~~~g~~~eA~~~~~~al~ 240 (656)
T PRK15174 183 T-CLSFLNKSRLPEDHDLARALLPFF---ALERQ---ESAGLAVDTLCAVGKYQEAIQTGESALA 240 (656)
T ss_pred H-HHHHHHcCCHHHHHHHHHHHHhcC---CCcch---hHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 1 123566788888877766543321 10101 1112234555567777777777776654
No 122
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=85.31 E-value=58 Score=35.03 Aligned_cols=221 Identities=14% Similarity=0.070 Sum_probs=121.2
Q ss_pred hHHHHHhhcCC-hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHH----
Q 014555 11 DSIAQAKEASN-PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKT---- 85 (422)
Q Consensus 11 ~~~ak~~~~~~-~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~---- 85 (422)
+.....+.+.+ +++|++.++..+++. -.++.....-+.++.+.++.++-...+..|....+.- -.+-
T Consensus 189 Ly~n~i~~E~g~~q~ale~L~~~e~~i-------~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn-~~Yy~~l~ 260 (700)
T KOG1156|consen 189 LYQNQILIEAGSLQKALEHLLDNEKQI-------VDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN-LDYYEGLE 260 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHhhhhHH-------HHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh-HHHHHHHH
Confidence 34444445554 689999998876643 2334444455677888888888777777776655321 1111
Q ss_pred ---------HHHHHHHHHHhhcCC-CC-hhHH--HHHH--HHHHHHHHhcchhHHhhHHHH-------HHHHHHHhcccH
Q 014555 86 ---------AKIVRGIIDAVAKIP-GT-SELQ--IALC--KEMVQWTRAEKRTFLRQRVEA-------RLAALLMESREY 143 (422)
Q Consensus 86 ---------~k~v~~~l~~~~~~~-~~-~~~~--~~l~--~~~i~~~~~~~r~~lr~~l~~-------~La~~~~~~g~~ 143 (422)
.+.+..+....++-+ -. ...+ +.+. +++.+. =.-|||..++. .+..+|.+.
T Consensus 261 ~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~----vdkyL~~~l~Kg~p~vf~dl~SLyk~p--- 333 (700)
T KOG1156|consen 261 KALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEI----VDKYLRPLLSKGVPSVFKDLRSLYKDP--- 333 (700)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHH----HHHHHHHHhhcCCCchhhhhHHHHhch---
Confidence 122233333333221 11 0111 1111 111111 12344442221 233333332
Q ss_pred HHHHHHHHHHHHHHhhh----------c-----cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 144 TEALTLLTSLVKEVRRL----------D-----DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 144 ~~A~~~l~~l~~e~~~~----------~-----~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
.... ++.++..+.... | ++..++=.+..-++-+-..|+++.|..+++.| |. |.-..-
T Consensus 334 ~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A------Id-HTPTli 405 (700)
T KOG1156|consen 334 EKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA------ID-HTPTLI 405 (700)
T ss_pred hHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH------hc-cCchHH
Confidence 2222 677776665443 1 23456656666677888999999999888765 33 223445
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChh-HH--HHHHHHHHHHH
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPR-AV--FSLKYMLLCKI 258 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~-~~--~~lky~vL~~l 258 (422)
.++...|+++.+.|++.+|+.-+=++ .+.+.++ ++ .+.+|++.+..
T Consensus 406 Ely~~KaRI~kH~G~l~eAa~~l~ea----~elD~aDR~INsKcAKYmLrAn~ 454 (700)
T KOG1156|consen 406 ELYLVKARIFKHAGLLDEAAAWLDEA----QELDTADRAINSKCAKYMLRANE 454 (700)
T ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH----HhccchhHHHHHHHHHHHHHccc
Confidence 77888999999999999999655555 2344443 33 57888876543
No 123
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=85.22 E-value=39 Score=33.02 Aligned_cols=70 Identities=20% Similarity=0.122 Sum_probs=55.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhh---hccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRR---LDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~---~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
...+..+...|+..+|..+|+.+...... .......+.+.+.++-++...||...|...+..+......+
T Consensus 268 ~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ 340 (355)
T cd05804 268 LHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARI 340 (355)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 46777888899999999999998665544 22344577888889999999999999999998887665433
No 124
>PRK14574 hmsH outer membrane protein; Provisional
Probab=85.11 E-value=71 Score=35.90 Aligned_cols=163 Identities=13% Similarity=0.011 Sum_probs=93.5
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHH
Q 014555 50 ITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRV 129 (422)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l 129 (422)
-..-+-+.+++|+++...+.+....+.-+.- .+.+. .++..+... +..+.-+..++.++. .++ .+.+.
T Consensus 37 ~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~-~~av~----dll~l~~~~-G~~~~A~~~~eka~~---p~n-~~~~~-- 104 (822)
T PRK14574 37 QYDSLIIRARAGDTAPVLDYLQEESKAGPLQ-SGQVD----DWLQIAGWA-GRDQEVIDVYERYQS---SMN-ISSRG-- 104 (822)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhhCccc-hhhHH----HHHHHHHHc-CCcHHHHHHHHHhcc---CCC-CCHHH--
Confidence 3445567889999998888888877644321 11232 333333323 222333566666662 122 23333
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
..-+|.++...|+|++|++++++++.. ++.. .++++..+.++...++..+|...+.++... +|....
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~----dP~n--~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~------dp~~~~- 171 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKK----DPTN--PDLISGMIMTQADAGRGGVVLKQATELAER------DPTVQN- 171 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHhccc------CcchHH-
Confidence 336688999999999999999998754 2221 233334477888889988887776655443 223111
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
....+-++...+++.+|...|-++++.+
T Consensus 172 -~l~layL~~~~~~~~~AL~~~ekll~~~ 199 (822)
T PRK14574 172 -YMTLSYLNRATDRNYDALQASSEAVRLA 199 (822)
T ss_pred -HHHHHHHHHhcchHHHHHHHHHHHHHhC
Confidence 1111222222445545877777777644
No 125
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=85.01 E-value=26 Score=33.05 Aligned_cols=124 Identities=11% Similarity=0.044 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH---H-------------hhCCHHHHHHHHHHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLH---F-------------SLRNLPKAKAALTAA 193 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~---~-------------~~~n~~kak~~l~~a 193 (422)
...|+..|...|+|.+|...++..++.-. .+..++..+...-++ + ...|...++.++..-
T Consensus 72 ~l~la~ayy~~~~y~~A~~~~e~fi~~~P----~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~ 147 (243)
T PRK10866 72 QLDLIYAYYKNADLPLAQAAIDRFIRLNP----THPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDF 147 (243)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCc----CCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHH
Confidence 55889999999999999999988865422 222333222111111 1 223666677666665
Q ss_pred HHhhccCCCC---chhh----------HHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHH
Q 014555 194 RTAANAIYVP---PAQQ----------GTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIM 259 (422)
Q Consensus 194 ~~~~~~i~~~---~~i~----------a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL 259 (422)
..+.+.-|.. |... +.--..-|.+|...++|..|...|-...++|... +...++|.+++-+-.-
T Consensus 148 ~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t--~~~~eal~~l~~ay~~ 224 (243)
T PRK10866 148 SKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT--QATRDALPLMENAYRQ 224 (243)
T ss_pred HHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHH
Confidence 5554443311 1111 2233457888888899999999999999888743 5566666666665543
No 126
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=84.87 E-value=8.5 Score=41.02 Aligned_cols=107 Identities=19% Similarity=0.178 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc---CCCC---
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA---IYVP--- 203 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~---i~~~--- 203 (422)
.--|++.+-..|+++.|...|+.-... ..-++|.|+.-+|++...|+++.|-..++.|+.+.+. |+++
T Consensus 374 ~y~laqh~D~~g~~~~A~~yId~AIdH------TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAK 447 (700)
T KOG1156|consen 374 LYFLAQHYDKLGDYEVALEYIDLAIDH------TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAK 447 (700)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHhcc------CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 447888888899999999998876543 3458999999999999999999999988887654331 1000
Q ss_pred -----------------------------chhhHH-HHHHHHHHhchhhcHHHHHHHHHHHhhhhhccC
Q 014555 204 -----------------------------PAQQGT-IDLQSGILHAEEKDYKTAYSYFFEAFEAFNALE 242 (422)
Q Consensus 204 -----------------------------~~i~a~-i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~ 242 (422)
..++.. +..-+|..+...++|..|.+.|.+++..|....
T Consensus 448 YmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~ 516 (700)
T KOG1156|consen 448 YMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWS 516 (700)
T ss_pred HHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHh
Confidence 000000 112267777777888888888888877776543
No 127
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=84.83 E-value=5.9 Score=34.26 Aligned_cols=72 Identities=15% Similarity=0.097 Sum_probs=57.6
Q ss_pred CccchHHHHHh-hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccch
Q 014555 7 PATTDSIAQAK-EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK 82 (422)
Q Consensus 7 ~~~~~~~ak~~-~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k 82 (422)
+.++..+|+.. .+.+..+|++.|..|...-+-+ ++..++-..|+..+++.|+++.-...+..+.+.++.=++
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g----~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~ 82 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFG----EYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN 82 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCC----cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence 33466677665 4557999999999999886543 388899999999999999999999988888887764333
No 128
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.79 E-value=24 Score=33.94 Aligned_cols=97 Identities=16% Similarity=0.308 Sum_probs=70.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH--
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT-- 209 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~-- 209 (422)
-++.++.-.|+|.-..+++.++.+. .......++. --.|+.+..||.+-|+.+.+..++.+++.. .+++.
T Consensus 182 ~~~~~llG~kEy~iS~d~~~~vi~~--~~e~~p~L~s---~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~---~~q~~~~ 253 (366)
T KOG2796|consen 182 SMANCLLGMKEYVLSVDAYHSVIKY--YPEQEPQLLS---GLGRISMQIGDIKTAEKYFQDVEKVTQKLD---GLQGKIM 253 (366)
T ss_pred HHHHHHhcchhhhhhHHHHHHHHHh--CCcccHHHHH---HHHHHHHhcccHHHHHHHHHHHHHHHhhhh---ccchhHH
Confidence 4566777788999999999998762 2122233333 337788899999999999998877766654 33333
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
....++.+|...+||..|++.|-++..
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~ 280 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILR 280 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccc
Confidence 345678889999999999988877754
No 129
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=84.56 E-value=3.8 Score=30.18 Aligned_cols=59 Identities=22% Similarity=0.275 Sum_probs=45.8
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 133 LAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 133 La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
|..+|...++|++|.+.++.++.- ++ .-...+.....++...|++..|...++.+....
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~----~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL----DP--DDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh----Cc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 457899999999999999988754 11 134455557889999999999999998876553
No 130
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=84.41 E-value=25 Score=35.07 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=98.6
Q ss_pred HHHh-hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh-HHHHHHHH
Q 014555 14 AQAK-EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA-KTAKIVRG 91 (422)
Q Consensus 14 ak~~-~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~-~~~k~v~~ 91 (422)
|+-+ +..+|..||--+..+-+..... ....+.+.++++.-|+.+.-+.-|....++-+.--+- ..-|.+++
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~Dn-------Te~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQDN-------TEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhccccc-------hHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhHHHHHHHHHH
Confidence 4443 3446788888877766654321 2256788899999998888777777777655432111 12355555
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHH----Hhc-chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWT----RAE-KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLL 166 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~----~~~-~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~ 166 (422)
+...+.++....+ -.=+..|++.- +++ ..+.+|.+.-..++..+-..|.+.+|+.--.+++.- | .--
T Consensus 269 v~K~les~e~~ie--~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~----d--~~d 340 (504)
T KOG0624|consen 269 VVKSLESAEQAIE--EKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI----D--PDD 340 (504)
T ss_pred HHHHHHHHHHHHh--hhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc----C--chH
Confidence 5555543322111 01112222211 122 124455555667788888889999998766665521 1 124
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 167 VDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 167 ~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
++++...+..|+....++.|-.-|++|...
T Consensus 341 v~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 341 VQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 566666777888777777777777777654
No 131
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=84.37 E-value=3.1 Score=29.84 Aligned_cols=50 Identities=10% Similarity=0.102 Sum_probs=39.3
Q ss_pred HHHHhhccccc--ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 333 NLCRLIEPYSR--VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 333 ~l~~i~~pYs~--I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.++.++..+-. ++..+||+.++++..-+-..+.+|+..|-|.-.-|..++
T Consensus 9 ~vL~~l~~~~~~~~t~~~la~~l~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 9 RVLMALARHPGEELTQSELAERLGISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp HHHHHHHHSTTSGEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 34445554444 999999999999999999999999999999887776654
No 132
>PLN03077 Protein ECB2; Provisional
Probab=84.33 E-value=76 Score=35.67 Aligned_cols=86 Identities=14% Similarity=0.005 Sum_probs=41.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
-+++++...|++++|.++++++. .+++ ..++-.-+..|...+|...++.+..+...+ +|.-.+. +
T Consensus 630 ~lv~~l~r~G~~~eA~~~~~~m~---~~pd-----~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l------~p~~~~~-y 694 (857)
T PLN03077 630 CVVDLLGRAGKLTEAYNFINKMP---ITPD-----PAVWGALLNACRIHRHVELGELAAQHIFEL------DPNSVGY-Y 694 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHCC---CCCC-----HHHHHHHHHHHHHcCChHHHHHHHHHHHhh------CCCCcch-H
Confidence 56667777777777776666541 0111 112222233455566666665543333222 2222222 2
Q ss_pred HHHHHHhchhhcHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ 232 (422)
..-+.+|...|+|.+|.+.+-
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~ 715 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRK 715 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHH
Confidence 223334556667776665443
No 133
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.69 E-value=15 Score=33.50 Aligned_cols=98 Identities=15% Similarity=0.118 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
.+.+|+-+.+.|++++|...|+..+. .+-|..++.-+-+.-+|+.+.+|.++.|- ++.+.+- .+...+.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~---~t~De~lk~l~~lRLArvq~q~~k~D~AL-------~~L~t~~-~~~w~~~ 160 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALA---QTKDENLKALAALRLARVQLQQKKADAAL-------KTLDTIK-EESWAAI 160 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHc---cchhHHHHHHHHHHHHHHHHHhhhHHHHH-------HHHhccc-cccHHHH
Confidence 56999999999999999887776543 22344444444555578888888877664 3334444 5567778
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
+-+..|.+++..||=..|...|-.+....
T Consensus 161 ~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 VAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 88889999999999999999998887765
No 134
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=83.67 E-value=10 Score=38.29 Aligned_cols=99 Identities=14% Similarity=0.120 Sum_probs=73.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhh---cc------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCC
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRL---DD------KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYV 202 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~---~~------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~ 202 (422)
.-++.|++.|+|..|...+...+..+... ++ ...++-+++-.+-+|+.++.+..|...-+++....
T Consensus 213 e~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~----- 287 (397)
T KOG0543|consen 213 ERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD----- 287 (397)
T ss_pred HhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-----
Confidence 55678888889999888888876665421 11 34677788888889999999998865555444432
Q ss_pred CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 203 PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
++...|-|+ .|..++..++|..|...|-.+.+-
T Consensus 288 ~~N~KALyR--rG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 288 PNNVKALYR--RGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred CCchhHHHH--HHHHHHhhccHHHHHHHHHHHHHh
Confidence 456667777 788889999999999999888653
No 135
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.65 E-value=3.9 Score=37.26 Aligned_cols=66 Identities=20% Similarity=0.264 Sum_probs=48.7
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
|+.-+.+|||.+.++.|.+++|++.|..+..+-..+ ... -.+-.+++..||-..|+..|.+|....
T Consensus 124 lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~----~~~---elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 124 LKALAALRLARVQLQQKKADAALKTLDTIKEESWAA----IVA---ELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH----HHH---HHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 344446799999999999999999998876442211 111 223457889999999999999987663
No 136
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=83.56 E-value=54 Score=33.29 Aligned_cols=97 Identities=12% Similarity=0.061 Sum_probs=62.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...-+-+....|+|+.|.+.+....+. .++ -.-.++..++.....||+.+|..++.++.... + ++.+ .
T Consensus 87 ~~~~glla~~~g~~~~A~~~l~~~~~~---~~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p-~~~l--~ 154 (409)
T TIGR00540 87 QTEEALLKLAEGDYAKAEKLIAKNADH---AAE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELA---G-NDNI--L 154 (409)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHhhc---CCC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---C-cCch--H
Confidence 445666677789999998888664322 111 23344566788888899999998888775432 1 2222 1
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
+....+.+++..++|..|...|-+..+..
T Consensus 155 ~~~~~a~l~l~~~~~~~Al~~l~~l~~~~ 183 (409)
T TIGR00540 155 VEIARTRILLAQNELHAARHGVDKLLEMA 183 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 23334777788888888887776665543
No 137
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=83.38 E-value=13 Score=39.79 Aligned_cols=120 Identities=16% Similarity=0.244 Sum_probs=81.1
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh--HHHHHHHHHHHHhhcC
Q 014555 22 PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA--KTAKIVRGIIDAVAKI 99 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~--~~~k~v~~~l~~~~~~ 99 (422)
|+.++..|..-++..+. +...-+..+++.++|++..+.+..+.+-=..++|. ....+-..++|.+++.
T Consensus 154 Pets~rvyrRYLk~~P~----------~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~ 223 (835)
T KOG2047|consen 154 PETSIRVYRRYLKVAPE----------AREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQN 223 (835)
T ss_pred hHHHHHHHHHHHhcCHH----------HHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhC
Confidence 67888888888876542 22345688899999999999998887633333332 2246788899999988
Q ss_pred CCCh-hHHHH-HHHHHHH-HHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Q 014555 100 PGTS-ELQIA-LCKEMVQ-WTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEV 157 (422)
Q Consensus 100 ~~~~-~~~~~-l~~~~i~-~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~ 157 (422)
|+.. +.+++ ++..-+. .+..-|.+|. .||+.|...|.++.|-+++.+-+..+
T Consensus 224 p~~~~slnvdaiiR~gi~rftDq~g~Lw~------SLAdYYIr~g~~ekarDvyeeai~~v 278 (835)
T KOG2047|consen 224 PDKVQSLNVDAIIRGGIRRFTDQLGFLWC------SLADYYIRSGLFEKARDVYEEAIQTV 278 (835)
T ss_pred cchhcccCHHHHHHhhcccCcHHHHHHHH------HHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 8742 22222 2222222 2333466776 89999999999999998887665443
No 138
>PLN03077 Protein ECB2; Provisional
Probab=83.33 E-value=53 Score=36.89 Aligned_cols=93 Identities=11% Similarity=-0.007 Sum_probs=60.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.+...|...|+.++|+++++++...-..+|... +..-+..|...|++.++..++....... .+ .|.+ ..+
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-----~~~ll~a~~~~g~v~ea~~~f~~M~~~~-gi--~P~~--~~y 628 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-----FISLLCACSRSGMVTQGLEYFHSMEEKY-SI--TPNL--KHY 628 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-----HHHHHHHHhhcChHHHHHHHHHHHHHHh-CC--CCch--HHH
Confidence 566778888999999988888765422222222 1122346888899999999888765322 22 3333 335
Q ss_pred HHHHHHhchhhcHHHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
.+-...+...|++.+|...|-+.
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC
Confidence 56666677889999998665543
No 139
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=83.26 E-value=54 Score=33.01 Aligned_cols=177 Identities=12% Similarity=0.076 Sum_probs=104.8
Q ss_pred chHHHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHH-HHhchhhcccchhHHHH
Q 014555 10 TDSIAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLL-TQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 10 ~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~-~~l~~~~~~~~k~~~~k 87 (422)
..+.+-.+-.+ +.+.||..-..++..-. +....|+.+-.+++.....|.++++...- ..+..+++. ..
T Consensus 9 q~~~g~~Ly~s~~~~~al~~w~~~L~~l~----~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~------~d 78 (518)
T KOG1941|consen 9 QIEKGLQLYQSNQTEKALQVWTKVLEKLS----DLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL------ED 78 (518)
T ss_pred HHHHHHhHhcCchHHHHHHHHHHHHHHHH----HHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH------HH
Confidence 33334344444 46788887777665422 24578999999999999999888876432 233333321 22
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHH--------hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Q 014555 88 IVRGIIDAVAKIPGTSELQIALCKEMVQWTR--------AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRR 159 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~--------~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~ 159 (422)
+..++..++. +..+ ..++.=+...+.+++ ..++.-.-+. .-++.-++..+-+++|++.++.-.+--..
T Consensus 79 s~~~~ea~ln-lar~-~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~--l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 79 SDFLLEAYLN-LARS-NEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVS--LSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHH-HHHH-HHHHHHhhhHHHHHHHHhcCCCCCcccccchhh--hhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 3344444332 1111 112222222222221 0123333332 34666667777899999988888777666
Q ss_pred hccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 160 LDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 160 ~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
.+|..+-+.|+..-..++-..+|+.||-.+.-+|-.+.+++
T Consensus 155 ~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~ 195 (518)
T KOG1941|consen 155 NDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSY 195 (518)
T ss_pred cCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhc
Confidence 77877777777777788888899999877776666655543
No 140
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.06 E-value=10 Score=36.33 Aligned_cols=99 Identities=14% Similarity=0.186 Sum_probs=62.6
Q ss_pred HHHHh--hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHH
Q 014555 13 IAQAK--EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVR 90 (422)
Q Consensus 13 ~ak~~--~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~ 90 (422)
.|-.+ +..+.++|+..|..+++.-+.+. ....+.+.++.+++..|++++-...+..+.+.+
T Consensus 148 ~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~----~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y------------- 210 (263)
T PRK10803 148 AAIALVQDKSRQDDAIVAFQNFVKKYPDST----YQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY------------- 210 (263)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHCcCCc----chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-------------
Confidence 44444 24568888888988888754332 334577888888888888877665544333322
Q ss_pred HHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q 014555 91 GIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVR 158 (422)
Q Consensus 91 ~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~ 158 (422)
|++... ... -.+++.++...|++++|.+.++.+++.-.
T Consensus 211 ---------P~s~~~---------------~dA------l~klg~~~~~~g~~~~A~~~~~~vi~~yP 248 (263)
T PRK10803 211 ---------PKSPKA---------------ADA------MFKVGVIMQDKGDTAKAKAVYQQVIKKYP 248 (263)
T ss_pred ---------CCCcch---------------hHH------HHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 222100 011 12567778888899999998888876543
No 141
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=83.00 E-value=19 Score=36.01 Aligned_cols=59 Identities=25% Similarity=0.309 Sum_probs=43.7
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAA 193 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a 193 (422)
+++-+|..++..|||++|+..+..+.. .++....+.+.| +-.++.+|.+..|+++..+|
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~~~el~vnL--Acc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMN----KDDAPAELGVNL--ACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhc----cCCCCcccchhH--HHHHHHHHHHHHHHHHHhhC
Confidence 355778889999999999999888864 345555666665 44667788888888776654
No 142
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=82.98 E-value=32 Score=30.27 Aligned_cols=94 Identities=16% Similarity=0.014 Sum_probs=68.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.+|..+.+.|++++|.++.+-+..- |. ...+.+.--.-++-.+|++.+|-..|..|-.+....| .| .
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~----Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-~~------~ 106 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY----DA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-QA------P 106 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh----Cc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-hH------H
Confidence 6777889999999999888776421 22 1233333334567788999999999999888765433 12 3
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...|..++.-|+...|...|..+...-
T Consensus 107 ~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 107 WAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 558888888999999999998886543
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=82.79 E-value=5.8 Score=28.94 Aligned_cols=58 Identities=19% Similarity=0.090 Sum_probs=41.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
.++.++...|++++|.+.++........ +. +++.....++...|++.+|...+..+..
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELDPD--NA----KAYYNLGLAYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCc--ch----hHHHHHHHHHHHHHhHHHHHHHHHHHHc
Confidence 6777788889999999888876543111 11 4555567788889999999888776643
No 144
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=82.77 E-value=23 Score=34.39 Aligned_cols=138 Identities=17% Similarity=0.248 Sum_probs=82.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR--NLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~--n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-.+.+|+..+.++.|.+.+.... ..++-..+ +.+.++.+.+..| ++..|--+|+.. ..+....| .
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~----~~~eD~~l--~qLa~awv~l~~g~e~~~~A~y~f~El---~~~~~~t~----~ 202 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQ----QIDEDSIL--TQLAEAWVNLATGGEKYQDAFYIFEEL---SDKFGSTP----K 202 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH----CCSCCHHH--HHHHHHHHHHHHTTTCCCHHHHHHHHH---HCCS--SH----H
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH----hcCCcHHH--HHHHHHHHHHHhCchhHHHHHHHHHHH---HhccCCCH----H
Confidence 46788999999999987776653 33433333 3455677777766 577787777653 33322122 2
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccc-hhhhhcccccccccCcchHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADD-VAGIISSKAGLQYVGPELDAMKA 288 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~e-l~~ll~~~~~~~~~~~~i~~~~~ 288 (422)
+--..+..++..|+|.+|...+.+++. .+|....++-.++.|..+.+...+ ....++.. +-..|+-+++.+
T Consensus 203 ~lng~A~~~l~~~~~~eAe~~L~~al~-----~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL---~~~~p~h~~~~~ 274 (290)
T PF04733_consen 203 LLNGLAVCHLQLGHYEEAEELLEEALE-----KDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL---KQSNPNHPLVKD 274 (290)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHCC-----C-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC---HHHTTTSHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH-----hccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH---HHhCCCChHHHH
Confidence 233567778899999999999999864 234445566677777777666533 33433321 112455566655
Q ss_pred HH
Q 014555 289 VA 290 (422)
Q Consensus 289 L~ 290 (422)
+.
T Consensus 275 ~~ 276 (290)
T PF04733_consen 275 LA 276 (290)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 145
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.75 E-value=71 Score=34.04 Aligned_cols=154 Identities=19% Similarity=0.211 Sum_probs=100.1
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh-cccch-hHHHHHHHHHHHHhhc
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF-SLIPK-AKTAKIVRGIIDAVAK 98 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~~~k-~~~~k~v~~~l~~~~~ 98 (422)
-+..|++.|+..-+..... .+-+...++++.+.+|+|+...+.+..++.-+ ++++. .+...+|-.++.....
T Consensus 356 ~~~ka~e~L~~~~~~~p~~------s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~ 429 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEK------SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYK 429 (652)
T ss_pred HHhhhHHHHHHHhccCCch------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHh
Confidence 3567777777665544321 24466788999999999999998888555444 22322 3556778888888877
Q ss_pred CCCChhHHHHHHHHHHHHHHh--cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRA--EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~--~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
+.+. +...+++...+.|-+. .+..-++. +-..+|.+.+..|.-++|...|++|.+.-+ .|...++... .
T Consensus 430 ~~~~-~~a~~vl~~Ai~~~~~~~t~s~~l~~-~~~~aa~f~lr~G~~~ea~s~leel~k~n~--~d~~~l~~lV-----~ 500 (652)
T KOG2376|consen 430 IKDN-DSASAVLDSAIKWWRKQQTGSIALLS-LMREAAEFKLRHGNEEEASSLLEELVKFNP--NDTDLLVQLV-----T 500 (652)
T ss_pred ccCC-ccHHHHHHHHHHHHHHhcccchHHHh-HHHHHhHHHHhcCchHHHHHHHHHHHHhCC--chHHHHHHHH-----H
Confidence 7664 4467888889997652 13344433 244788999999999999999999876422 2333333322 2
Q ss_pred HHhhCCHHHHHHH
Q 014555 177 HFSLRNLPKAKAA 189 (422)
Q Consensus 177 ~~~~~n~~kak~~ 189 (422)
.+..=|..+|..+
T Consensus 501 a~~~~d~eka~~l 513 (652)
T KOG2376|consen 501 AYARLDPEKAESL 513 (652)
T ss_pred HHHhcCHHHHHHH
Confidence 2344466666544
No 146
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.74 E-value=71 Score=34.04 Aligned_cols=188 Identities=14% Similarity=0.068 Sum_probs=103.3
Q ss_pred hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh-cc---cchhHHHHHHHHH
Q 014555 17 KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF-SL---IPKAKTAKIVRGI 92 (422)
Q Consensus 17 ~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~---~~k~~~~k~v~~~ 92 (422)
..+++.++|++.--.|+...+.+.+ ++..-+-.+++.+.|++....+.--.... .. +-|+|+.
T Consensus 23 ~~~~e~e~a~k~~~Kil~~~pdd~~-------a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~------ 89 (652)
T KOG2376|consen 23 GKNGEYEEAVKTANKILSIVPDDED-------AIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCE------ 89 (652)
T ss_pred ccchHHHHHHHHHHHHHhcCCCcHh-------hHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHH------
Confidence 3444678888888887776544433 33344455566667777664443222100 00 1233332
Q ss_pred HHHhhcCCCChhHHHHHHHHHHH---HHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-c-------
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQ---WTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL-D------- 161 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~---~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~-~------- 161 (422)
.++.-.++++. .++...+ ++ ..--|++++..|+|++|+++++.|.+.-... +
T Consensus 90 ------------Yrlnk~Dealk~~~~~~~~~~-~l----l~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl 152 (652)
T KOG2376|consen 90 ------------YRLNKLDEALKTLKGLDRLDD-KL----LELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANL 152 (652)
T ss_pred ------------HHcccHHHHHHHHhcccccch-HH----HHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 11112222222 2211111 11 2245677888999999999999985321110 0
Q ss_pred -------cc----------hhHHHHHHHHHHHHHhhCCHHHHHHHHHHH-----HHhhccCCCCchhhHHHHHHH---HH
Q 014555 162 -------DK----------LLLVDIDLLESKLHFSLRNLPKAKAALTAA-----RTAANAIYVPPAQQGTIDLQS---GI 216 (422)
Q Consensus 162 -------~~----------~~~~e~~l~~~~~~~~~~n~~kak~~l~~a-----~~~~~~i~~~~~i~a~i~~~~---g~ 216 (422)
.. .---+.+.-.+-.+...|++.+|...+.+| +++.+...++..++..+..+. +-
T Consensus 153 ~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlay 232 (652)
T KOG2376|consen 153 LAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAY 232 (652)
T ss_pred HHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHH
Confidence 00 001244555666777889999999999999 444555554556776655444 44
Q ss_pred HhchhhcHHHHHHHHHHH
Q 014555 217 LHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 217 ~~~~~~dy~~A~~~f~ea 234 (422)
++...|+-.+|.+.|-..
T Consensus 233 VlQ~~Gqt~ea~~iy~~~ 250 (652)
T KOG2376|consen 233 VLQLQGQTAEASSIYVDI 250 (652)
T ss_pred HHHHhcchHHHHHHHHHH
Confidence 455678888887766543
No 147
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=82.49 E-value=24 Score=34.29 Aligned_cols=140 Identities=18% Similarity=0.161 Sum_probs=83.8
Q ss_pred chHHHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
.+.+++.+... +..+|...|.......+.. -.+...+++.+...|+.+.....+..+-.--. .+.+..
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~-------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~--~~~~~~-- 205 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPEN-------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQ--DKAAHG-- 205 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCccc-------chHHHHHHHHHHHcCChHHHHHHHHhCcccch--hhHHHH--
Confidence 34455665544 4677777787777654422 23667889999999999999888877664111 123332
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc---chh
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD---KLL 165 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~---~~~ 165 (422)
++.=++++.+..+..+ -.++.. .++..-+..- + -..||..+...|++++|++.|-.+++.-.+..| +..
T Consensus 206 l~a~i~ll~qaa~~~~-~~~l~~---~~aadPdd~~--a--a~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~ 277 (304)
T COG3118 206 LQAQIELLEQAAATPE-IQDLQR---RLAADPDDVE--A--ALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKT 277 (304)
T ss_pred HHHHHHHHHHHhcCCC-HHHHHH---HHHhCCCCHH--H--HHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHH
Confidence 4444455544333211 112222 2222212222 2 349999999999999999999988876555433 344
Q ss_pred HHH
Q 014555 166 LVD 168 (422)
Q Consensus 166 ~~e 168 (422)
+++
T Consensus 278 lle 280 (304)
T COG3118 278 LLE 280 (304)
T ss_pred HHH
Confidence 555
No 148
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=81.75 E-value=34 Score=29.62 Aligned_cols=84 Identities=15% Similarity=0.050 Sum_probs=53.0
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHH
Q 014555 133 LAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDL 212 (422)
Q Consensus 133 La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~ 212 (422)
-|.-.++.|+|.+|.+.++.|...-.. +..--...|..+-.|+..+++..|.+.+++-.++- |.||.+--.++
T Consensus 16 ~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh---P~hp~vdYa~Y- 88 (142)
T PF13512_consen 16 EAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH---PTHPNVDYAYY- 88 (142)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---CCCCCccHHHH-
Confidence 345567889999999999988644221 22222344555779999999999998887665542 33555443333
Q ss_pred HHHHHhchhhc
Q 014555 213 QSGILHAEEKD 223 (422)
Q Consensus 213 ~~g~~~~~~~d 223 (422)
..|+.+....+
T Consensus 89 ~~gL~~~~~~~ 99 (142)
T PF13512_consen 89 MRGLSYYEQDE 99 (142)
T ss_pred HHHHHHHHHhh
Confidence 35555554433
No 149
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=81.69 E-value=84 Score=34.13 Aligned_cols=264 Identities=16% Similarity=0.104 Sum_probs=136.5
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.|+.+|...+........++++ .-..-+++.+....++..+.++..-+..-+ -.+.. .|.+ .++++.
T Consensus 598 gdv~~ar~il~~af~~~pnsee-------iwlaavKle~en~e~eraR~llakar~~sg-TeRv~-mKs~--~~er~l-- 664 (913)
T KOG0495|consen 598 GDVPAARVILDQAFEANPNSEE-------IWLAAVKLEFENDELERARDLLAKARSISG-TERVW-MKSA--NLERYL-- 664 (913)
T ss_pred CCcHHHHHHHHHHHHhCCCcHH-------HHHHHHHHhhccccHHHHHHHHHHHhccCC-cchhh-HHHh--HHHHHh--
Confidence 3566666666666655444332 222345777788888888877766554222 11111 1211 122222
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
+..+.-++||+++++....-.++|+ .|++++++.++.+.|-+.+..=.+.|.. -+-+.+.-+++--.
T Consensus 665 -d~~eeA~rllEe~lk~fp~f~Kl~l------mlGQi~e~~~~ie~aR~aY~~G~k~cP~------~ipLWllLakleEk 731 (913)
T KOG0495|consen 665 -DNVEEALRLLEEALKSFPDFHKLWL------MLGQIEEQMENIEMAREAYLQGTKKCPN------SIPLWLLLAKLEEK 731 (913)
T ss_pred -hhHHHHHHHHHHHHHhCCchHHHHH------HHhHHHHHHHHHHHHHHHHHhccccCCC------CchHHHHHHHHHHH
Confidence 1123446778888775433345665 8899999999988887655543332222 22333444666667
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHH
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIM 259 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL 259 (422)
.|++.+|+.++++++--.-+. +.+...+-.+-..-|+-..|....-.|+..+.+.|. +=.-+|-
T Consensus 732 ~~~~~rAR~ildrarlkNPk~-------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~---------LWaEaI~ 795 (913)
T KOG0495|consen 732 DGQLVRARSILDRARLKNPKN-------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGL---------LWAEAIW 795 (913)
T ss_pred hcchhhHHHHHHHHHhcCCCc-------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccch---------hHHHHHH
Confidence 788999999999886532221 122333344444456666666666666655544332 1112333
Q ss_pred hcCccchhhhhcccccccc--cCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHH
Q 014555 260 VSQADDVAGIISSKAGLQY--VGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLE 331 (422)
Q Consensus 260 ~~~~~el~~ll~~~~~~~~--~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~ 331 (422)
.+.+++....+.. +.+- .+|++ +..+.+.|... .++....+-+...+..||-....|-.+++.=..
T Consensus 796 le~~~~rkTks~D--ALkkce~dphV--llaia~lfw~e--~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~ 863 (913)
T KOG0495|consen 796 LEPRPQRKTKSID--ALKKCEHDPHV--LLAIAKLFWSE--KKIEKAREWFERAVKKDPDNGDAWAWFYKFELR 863 (913)
T ss_pred hccCcccchHHHH--HHHhccCCchh--HHHHHHHHHHH--HHHHHHHHHHHHHHccCCccchHHHHHHHHHHH
Confidence 3333333221111 1111 24443 34455555221 233344444455677788776677776654333
No 150
>PRK12370 invasion protein regulator; Provisional
Probab=80.88 E-value=82 Score=33.51 Aligned_cols=148 Identities=9% Similarity=-0.080 Sum_probs=84.0
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCC
Q 014555 22 PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPG 101 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~ 101 (422)
.++|++.+...++.++.+.+ +...++.++...|+++.-...+......-+.-+.+.. .+-..+... +
T Consensus 320 ~~~A~~~~~~Al~ldP~~~~-------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~-----~lg~~l~~~-G 386 (553)
T PRK12370 320 MIKAKEHAIKATELDHNNPQ-------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKY-----YYGWNLFMA-G 386 (553)
T ss_pred HHHHHHHHHHHHhcCCCCHH-------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHC-C
Confidence 57888888888877654432 4556778888999999988888777654432211111 111111111 2
Q ss_pred ChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC
Q 014555 102 TSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR 181 (422)
Q Consensus 102 ~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~ 181 (422)
..+.-+..++..++.--. +... ...++..++..|++++|...+.+.+.... .+. ...+.....++...|
T Consensus 387 ~~~eAi~~~~~Al~l~P~----~~~~--~~~~~~~~~~~g~~eeA~~~~~~~l~~~~-p~~----~~~~~~la~~l~~~G 455 (553)
T PRK12370 387 QLEEALQTINECLKLDPT----RAAA--GITKLWITYYHTGIDDAIRLGDELRSQHL-QDN----PILLSMQVMFLSLKG 455 (553)
T ss_pred CHHHHHHHHHHHHhcCCC----Chhh--HHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccC----HHHHHHHHHHHHhCC
Confidence 122234445554443111 1111 11334456668999999998887654321 111 222333456777899
Q ss_pred CHHHHHHHHHHH
Q 014555 182 NLPKAKAALTAA 193 (422)
Q Consensus 182 n~~kak~~l~~a 193 (422)
++++|+..+.+.
T Consensus 456 ~~~eA~~~~~~~ 467 (553)
T PRK12370 456 KHELARKLTKEI 467 (553)
T ss_pred CHHHHHHHHHHh
Confidence 999999988654
No 151
>PF04703 FaeA: FaeA-like protein; PDB: 2JT1_A 2HTJ_A.
Probab=80.48 E-value=2.6 Score=31.04 Aligned_cols=41 Identities=17% Similarity=0.232 Sum_probs=33.0
Q ss_pred HHHhhcc-cccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 334 LCRLIEP-YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 334 l~~i~~p-Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|+.+++- ..-++-.+||+.+|++.-.+..+|..+-.+|+|.
T Consensus 5 Il~~i~~~~~p~~T~eiA~~~gls~~~aR~yL~~Le~eG~V~ 46 (62)
T PF04703_consen 5 ILEYIKEQNGPLKTREIADALGLSIYQARYYLEKLEKEGKVE 46 (62)
T ss_dssp HHHHHHHHTS-EEHHHHHHHHTS-HHHHHHHHHHHHHCTSEE
T ss_pred HHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 3344433 6779999999999999999999999999999985
No 152
>KOG4414 consensus COP9 signalosome, subunit CSN8 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=80.47 E-value=5.9 Score=34.19 Aligned_cols=82 Identities=20% Similarity=0.280 Sum_probs=53.3
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHH
Q 014555 280 GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDH 359 (422)
Q Consensus 280 ~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~e 359 (422)
.|++...-.+.+-.-++|+...-+.++.|.-.-...|. ...+++.-+.+...-++..|++|..+++|-.+|+|+++
T Consensus 73 k~El~aaWgiGQkiWq~Df~GiYeaI~~~dWSeeak~i----maAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~~dd 148 (197)
T KOG4414|consen 73 KPELGAAWGIGQKIWQHDFAGIYEAINAHDWSEEAKDI----MAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLPEDD 148 (197)
T ss_pred CchhhhhhhhhHHHHhcccchHHHHHhhhcchHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 34444444444444555555555555554322222222 35566667788888888999999999999999999998
Q ss_pred HHHHHH
Q 014555 360 VEKKLS 365 (422)
Q Consensus 360 vE~~l~ 365 (422)
+-+.+.
T Consensus 149 Atk~il 154 (197)
T KOG4414|consen 149 ATKGIL 154 (197)
T ss_pred HHHHHH
Confidence 876553
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=80.40 E-value=34 Score=34.29 Aligned_cols=77 Identities=19% Similarity=0.123 Sum_probs=55.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.+|..|...|++++|+..+...+.- ++. ....++....+++..|++..|...++++..+.. .++.+...+.
T Consensus 41 ~~a~~~~~~g~~~eAl~~~~~Al~l----~P~--~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P---~~~~~~~~l~ 111 (356)
T PLN03088 41 DRAQANIKLGNFTEAVADANKAIEL----DPS--LAKAYLRKGTACMKLEEYQTAKAALEKGASLAP---GDSRFTKLIK 111 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CcC--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC---CCHHHHHHHH
Confidence 7788899999999999888887642 222 234455667889999999999999998877642 2456665666
Q ss_pred HHHHHH
Q 014555 212 LQSGIL 217 (422)
Q Consensus 212 ~~~g~~ 217 (422)
.|.+.+
T Consensus 112 ~~~~kl 117 (356)
T PLN03088 112 ECDEKI 117 (356)
T ss_pred HHHHHH
Confidence 665555
No 154
>PF02082 Rrf2: Transcriptional regulator; InterPro: IPR000944 The following uncharacterised bacterial proteins have been shown to be evolutionary related, Desulfovibrio vulgaris protein Rrf2; Escherichia coli hypothetical proteins yfhP and yjeB; Bacillus subtilis hypothetical proteins yhdE, yrzC and ywgB; Mycobacterium tuberculosis hypothetical protein Rv1287; and Synechocystis sp. (strain PCC 6803) hypothetical protein slr0846. These are small proteins of 12 to 18kDa which seem to contain a signal sequence, and may represent a family of probable transcriptional regulators.; PDB: 3T8T_A 3T8R_A 3K69_A 3LWF_C 1XD7_A 2Y75_E 1YLF_C.
Probab=80.35 E-value=7.7 Score=29.96 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=36.6
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK 391 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~ 391 (422)
.++..+||+.+++|+..+++.+.++...|.|...=-+. |-.....+++
T Consensus 25 ~~s~~eiA~~~~i~~~~l~kil~~L~~~Gli~s~~G~~-GGy~L~~~~~ 72 (83)
T PF02082_consen 25 PVSSKEIAERLGISPSYLRKILQKLKKAGLIESSRGRG-GGYRLARPPE 72 (83)
T ss_dssp -BEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEETSTT-SEEEESS-CC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHhhCCeeEecCCCC-CceeecCCHH
Confidence 49999999999999999999999999999987654444 4444444444
No 155
>PRK09954 putative kinase; Provisional
Probab=80.26 E-value=3.8 Score=40.96 Aligned_cols=55 Identities=11% Similarity=0.379 Sum_probs=46.4
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecCCCEEEE
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQGVGCLII 386 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~~g~v~~ 386 (422)
+.|+++++-..+++..+||+.||++...|.+.+.+|..+|.|.| .+|+..+++.+
T Consensus 6 ~~il~~l~~~~~~s~~~la~~l~~s~~~v~~~i~~L~~~g~i~~~~~~l~~~~~v~vi 63 (362)
T PRK09954 6 KEILAILRRNPLIQQNEIADILQISRSRVAAHIMDLMRKGRIKGKGYILTEQEYCVVV 63 (362)
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCcCCcEEEEcCCccEEEE
Confidence 34666666667999999999999999999999999999999964 77888877654
No 156
>smart00345 HTH_GNTR helix_turn_helix gluconate operon transcriptional repressor.
Probab=80.10 E-value=3.3 Score=29.14 Aligned_cols=37 Identities=14% Similarity=0.225 Sum_probs=32.4
Q ss_pred hcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 338 IEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 338 ~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
+.|=..+ +...||+.+|+|..-|.+.+.+|..+|.|.
T Consensus 14 ~~~~~~l~s~~~la~~~~vs~~tv~~~l~~L~~~g~i~ 51 (60)
T smart00345 14 LRPGDKLPSERELAAQLGVSRTTVREALSRLEAEGLVQ 51 (60)
T ss_pred CCCCCcCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3455567 899999999999999999999999999875
No 157
>PF01047 MarR: MarR family; InterPro: IPR000835 The MarR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 135 amino acids present in transcription regulators of the MarR/SlyA family, involved in the development of antibiotic resistance. This family of transcription regulators is named after Escherichia coli MarR, a repressor of genes which activate the multiple antibiotic resistance and oxidative stress regulons, and after slyA from Salmonella typhimurium and E. coli, a transcription regulator that is required for virulence and survival in the macrophage environment. Regulators with the MarR-type HTH domain are present in bacteria and archaea and control a variety of biological functions, including resistance to multiple antibiotics, household disinfectants, organic solvents, oxidative stress agents and regulation of the virulence factor synthesis in pathogens of humans and plants. Many of the MarR-like regulators respond to aromatic compounds [, , ]. The crystal structures of MarR, MexR and SlyA have been determined and show a winged HTH DNA-binding core flanked by helices involved in dimerisation. The DNA-binding domains are ascribed to the superfamily of winged helix proteins, containing a three (four)-helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-(H1')-H2-B1-H3-H4-B2-B3-H5-H6. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. The helices 1, 5 and 6 are involved in dimerisation, as most MarR-like transcription regulators form dimers [, ]. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1JGS_A 2NYX_D 2PEX_B 2PFB_A 3BPX_A 3BPV_A 2BV6_A 3BJA_A 3E6M_B 2ETH_A ....
Probab=80.00 E-value=4.6 Score=28.69 Aligned_cols=51 Identities=10% Similarity=0.122 Sum_probs=42.2
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
-.++.++..+-.++..+||+.++++..-+-..+.+|...|-|.-..|..|+
T Consensus 6 ~~iL~~l~~~~~~~~~~la~~~~~~~~~~t~~i~~L~~~g~I~r~~~~~D~ 56 (59)
T PF01047_consen 6 FRILRILYENGGITQSELAEKLGISRSTVTRIIKRLEKKGLIERERDPDDR 56 (59)
T ss_dssp HHHHHHHHHHSSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEEEEETTET
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCC
Confidence 344555556677999999999999999999999999999999988877664
No 158
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=79.36 E-value=2.9 Score=28.46 Aligned_cols=25 Identities=24% Similarity=0.307 Sum_probs=23.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
+.||+.|.+.||++.|-++|++++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4899999999999999999999884
No 159
>smart00344 HTH_ASNC helix_turn_helix ASNC type. AsnC: an autogenously regulated activator of asparagine synthetase A transcription in Escherichia coli
Probab=79.08 E-value=4 Score=33.05 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=40.0
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
..|+..+....++++..||+.+|+|+..+-+.+.+|...|-|.+ .+|+
T Consensus 6 ~~il~~L~~~~~~~~~~la~~l~~s~~tv~~~l~~L~~~g~i~~~~~~~~~ 56 (108)
T smart00344 6 RKILEELQKDARISLAELAKKVGLSPSTVHNRVKRLEEEGVIKGYTAVINP 56 (108)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeceEEEeCH
Confidence 45556666667899999999999999999999999999998873 4553
No 160
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=78.75 E-value=33 Score=34.95 Aligned_cols=56 Identities=20% Similarity=0.192 Sum_probs=27.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDD-KLLLVDIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~-~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
-.|+++++.++++.|+++.+....-....-+ -..+++ +|...||+..|-..++.+-
T Consensus 239 ~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~-------~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 239 LQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAE-------CYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHH-------HHHhcCCHHHHHHHHhcCc
Confidence 4455555555555555555555444333221 222222 4445555555555555543
No 161
>PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B ....
Probab=78.33 E-value=4.1 Score=27.36 Aligned_cols=36 Identities=22% Similarity=0.417 Sum_probs=26.5
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhh
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQM 367 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~m 367 (422)
+.|+..+..-.+.++..||+.+|+|+..|-.-+.+|
T Consensus 6 ~~Il~~Lq~d~r~s~~~la~~lglS~~~v~~Ri~rL 41 (42)
T PF13404_consen 6 RKILRLLQEDGRRSYAELAEELGLSESTVRRRIRRL 41 (42)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHCcCHHHHHHHHHHh
Confidence 455566666699999999999999999988777654
No 162
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=78.31 E-value=4.9 Score=25.60 Aligned_cols=23 Identities=13% Similarity=0.343 Sum_probs=19.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLV 154 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~ 154 (422)
.|+.+|.+.|+|++|.++++..+
T Consensus 4 ~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 4 NLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 78999999999999999998865
No 163
>PRK11169 leucine-responsive transcriptional regulator; Provisional
Probab=78.19 E-value=4.1 Score=36.01 Aligned_cols=49 Identities=10% Similarity=0.210 Sum_probs=43.7
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
.+.|+.+++.-.|++..+||+.+|+|..-|-+-+-+|..+|.|.| .+|.
T Consensus 16 D~~IL~~Lq~d~R~s~~eiA~~lglS~~tv~~Ri~rL~~~GvI~~~~~~v~p 67 (164)
T PRK11169 16 DRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNP 67 (164)
T ss_pred HHHHHHHhccCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 567778888889999999999999999999999999999999964 5664
No 164
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=78.09 E-value=21 Score=29.41 Aligned_cols=60 Identities=22% Similarity=0.094 Sum_probs=45.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
.++.++...|++.+|.+.++..+.- ++. ..+++.....++...|++.+|...++.+....
T Consensus 56 ~la~~~~~~~~~~~A~~~~~~~~~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 56 GLAACCQMLKEYEEAIDAYALAAAL----DPD--DPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc----CCC--ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 7788899999999999988876542 221 34455556778889999999999998877653
No 165
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.90 E-value=67 Score=30.75 Aligned_cols=61 Identities=15% Similarity=0.054 Sum_probs=34.8
Q ss_pred hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 17 KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 17 ~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
....+|++-++...+++.....+ ......+-.+.++.--....|..+.....+..|+..++
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~-~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp 83 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSG-ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP 83 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhc-ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC
Confidence 34457888888888888543211 00002233444544455556677777777777776553
No 166
>PRK11179 DNA-binding transcriptional regulator AsnC; Provisional
Probab=77.39 E-value=4.2 Score=35.44 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=41.3
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
.+.|+..+.--.|++...||+.+|+|+..|-.-+-+|..+|-|.+ .+|.
T Consensus 11 D~~Il~~Lq~d~R~s~~eiA~~lglS~~tV~~Ri~rL~~~GvI~~~~~~v~~ 62 (153)
T PRK11179 11 DRGILEALMENARTPYAELAKQFGVSPGTIHVRVEKMKQAGIITGTRVDVNP 62 (153)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeEEEEECH
Confidence 345556666569999999999999999999999999999999963 5674
No 167
>cd00090 HTH_ARSR Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.
Probab=77.33 E-value=13 Score=26.88 Aligned_cols=44 Identities=11% Similarity=0.121 Sum_probs=37.5
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
++.++|++.+|++...+-..+..|...|.|...-+...+...+.
T Consensus 21 ~~~~ei~~~~~i~~~~i~~~l~~L~~~g~i~~~~~~~~~~~~~~ 64 (78)
T cd00090 21 LTVSELAERLGLSQSTVSRHLKKLEEAGLVESRREGRRVYYSLT 64 (78)
T ss_pred cCHHHHHHHHCcCHhHHHHHHHHHHHCCCeEEEEeccEEEEEeC
Confidence 99999999999999999999999999999988666644444444
No 168
>smart00420 HTH_DEOR helix_turn_helix, Deoxyribose operon repressor.
Probab=76.65 E-value=4.7 Score=27.48 Aligned_cols=34 Identities=15% Similarity=0.304 Sum_probs=30.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
..++..+|++.++++..-+.+.+..|...|.|.-
T Consensus 13 ~~~s~~~l~~~l~~s~~tv~~~l~~L~~~g~i~~ 46 (53)
T smart00420 13 GKVSVEELAELLGVSEMTIRRDLNKLEEQGLLTR 46 (53)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE
Confidence 4589999999999999999999999999987753
No 169
>TIGR02787 codY_Gpos GTP-sensing transcriptional pleiotropic repressor CodY. This model represents the full length of CodY, a pleiotropic repressor in Bacillus subtilis and other Firmicutes (low-GC Gram-positive bacteria) that responds to intracellular levels of GTP and branched chain amino acids. The C-terminal helix-turn-helix DNA-binding region is modeled by pfam08222 in Pfam.
Probab=76.52 E-value=9.3 Score=35.96 Aligned_cols=63 Identities=8% Similarity=0.113 Sum_probs=49.3
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHhhc---ccc-----------------cccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 315 DPIVHRHLSSLYDTLLEQNLCRLIE---PYS-----------------RVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 315 D~~l~~~~~~L~~~i~~~~l~~i~~---pYs-----------------~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
-..++..-..+.+..|.++..++.- +|| +++-..||+.+|+|...+-.-+.++-..|.|.
T Consensus 150 ~Eilr~~~~~iEee~Rkka~Vq~Ai~tLSySEleAv~~IL~~L~~~egrlse~eLAerlGVSRs~ireAlrkLE~aGvIe 229 (251)
T TIGR02787 150 MELLRAQAEEIEEEARKKAAVQMAINTLSYSELEAVEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIE 229 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHhHHHHHHHHHHHhccccccccHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3345555566666777777666642 455 99999999999999999999999999999998
Q ss_pred eee
Q 014555 375 GTL 377 (422)
Q Consensus 375 gkI 377 (422)
++=
T Consensus 230 ~r~ 232 (251)
T TIGR02787 230 SRS 232 (251)
T ss_pred ecc
Confidence 853
No 170
>cd07377 WHTH_GntR Winged helix-turn-helix (WHTH) DNA-binding domain of the GntR family of transcriptional regulators. This CD represents the winged HTH DNA-binding domain of the GntR (named after the gluconate operon repressor in Bacillus subtilis) family of bacterial transcriptional regulators and their putative homologs found in eukaryota and archaea. The GntR family has over 6000 members distributed among almost all bacterial species, which is comprised of FadR, HutC, MocR, YtrA, AraR, PlmA, and other subfamilies for the regulation of the most varied biological process. The monomeric proteins of the GntR family are characterized by two function domains: a small highly conserved winged helix-turn-helix prokaryotic DNA binding domain in the N-terminus, and a very diverse regulatory ligand-binding domain in the C-terminus for effector-binding/oligomerization, which provides the basis for the subfamily classifications. Binding of the effector to GntR-like transcriptional regulators is
Probab=76.28 E-value=7.8 Score=27.75 Aligned_cols=51 Identities=20% Similarity=0.234 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHhhccccccc-chhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 324 SLYDTLLEQNLCRLIEPYSRVE-IAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I~-l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.+.+.+...-+.....+-..++ ..+||+.+|++...+.+.+.+|...|-|.
T Consensus 5 ~~~~~i~~~i~~~~~~~~~~~~~~~~la~~~~is~~~v~~~l~~L~~~G~i~ 56 (66)
T cd07377 5 QIADQLREAILSGELKPGDRLPSERELAEELGVSRTTVREALRELEAEGLVE 56 (66)
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 3444444433333334444454 89999999999999999999999999774
No 171
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.17 E-value=82 Score=32.94 Aligned_cols=49 Identities=16% Similarity=0.192 Sum_probs=21.9
Q ss_pred ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 141 REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 141 g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
+|+..|..+|.+-. ..|++....-.-+ .++-+..+++.+|-.+++++-.
T Consensus 517 ~d~~~a~~Ll~KA~----e~Dpkce~A~~tl--aq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 517 EDINQAENLLRKAI----ELDPKCEQAYETL--AQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred hhHHHHHHHHHHHH----ccCchHHHHHHHH--HHHHHHHhhHHHHHHHHHHHHH
Confidence 45555555444432 2333333333222 2234455555555555555433
No 172
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=76.14 E-value=1.4e+02 Score=33.48 Aligned_cols=68 Identities=19% Similarity=0.078 Sum_probs=46.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhh---------c-------cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRL---------D-------DKLLLVDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~---------~-------~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
=-+.+++..|+.+.|+.++..-.....-. + +...+.-.| ..+|.|-..|++.+|--++++|++
T Consensus 917 WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcY-hlaR~YEn~g~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 917 WWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACY-HLARMYENDGDVVKAVKFFTRAQA 995 (1416)
T ss_pred HHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHH-HHHHHhhhhHHHHHHHHHHHHHHH
Confidence 34666777888888888776654432211 0 111222222 347899999999999999999999
Q ss_pred hhccC
Q 014555 196 AANAI 200 (422)
Q Consensus 196 ~~~~i 200 (422)
.+|+|
T Consensus 996 fsnAI 1000 (1416)
T KOG3617|consen 996 FSNAI 1000 (1416)
T ss_pred HHHHH
Confidence 98876
No 173
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=76.14 E-value=3.5 Score=25.01 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=23.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEV 157 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~ 157 (422)
.++|.++...|++++|.+.++.++.+-
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 378899999999999999999988653
No 174
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=75.96 E-value=81 Score=30.75 Aligned_cols=72 Identities=14% Similarity=0.111 Sum_probs=55.7
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhcc---CCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANA---IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP 244 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~---i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~ 244 (422)
..++++...++...|...++........ .. .......+..+.++.+...|||.+|...+.++..--..+|-.
T Consensus 269 ~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs 343 (355)
T cd05804 269 HAALALAGAGDKDALDKLLAALKGRASSADDNK-QPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGS 343 (355)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhccCchh-hhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCc
Confidence 4678888999999999999887765544 21 223456778899999999999999999999998766555544
No 175
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=75.81 E-value=45 Score=35.85 Aligned_cols=59 Identities=20% Similarity=0.187 Sum_probs=35.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.+|+++-+.|++++|+..+...++- +...+|-+.--.-.+...|+.+.|-..+..|..+
T Consensus 121 n~aN~~kerg~~~~al~~y~~aiel------~p~fida~inla~al~~~~~~~~a~~~~~~alql 179 (966)
T KOG4626|consen 121 NLANILKERGQLQDALALYRAAIEL------KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL 179 (966)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHhc------CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc
Confidence 5888888999999998877665421 1224444444444455555555555555544443
No 176
>PRK11189 lipoprotein NlpI; Provisional
Probab=75.09 E-value=45 Score=32.25 Aligned_cols=93 Identities=13% Similarity=0.022 Sum_probs=66.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.++.+|...|++.+|...++..+.. ++. ..+.+.....++...|++..|...+.++..+. |.-. ...
T Consensus 69 ~~g~~~~~~g~~~~A~~~~~~Al~l----~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~-~a~ 135 (296)
T PRK11189 69 ERGVLYDSLGLRALARNDFSQALAL----RPD--MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYN-YAY 135 (296)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHc----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCH-HHH
Confidence 6677889999999998877776532 222 24555666789999999999999998887653 2211 122
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
..-|..+...|+|..|...|-.+...
T Consensus 136 ~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 136 LNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 34677777889999999988887653
No 177
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=74.45 E-value=28 Score=26.97 Aligned_cols=49 Identities=8% Similarity=0.096 Sum_probs=39.0
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
++.++.....++.++||+.++++...+-..+.+|...|-|.-.-|..++
T Consensus 15 il~~l~~~~~~~~~~la~~~~~s~~~i~~~l~~L~~~g~v~~~~~~~~~ 63 (101)
T smart00347 15 VLRILYEEGPLSVSELAKRLGVSPSTVTRVLDRLEKKGLIRRLPSPEDR 63 (101)
T ss_pred HHHHHHHcCCcCHHHHHHHHCCCchhHHHHHHHHHHCCCeEecCCCCCC
Confidence 3344433446899999999999999999999999999999876665443
No 178
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=74.36 E-value=88 Score=30.36 Aligned_cols=46 Identities=17% Similarity=0.268 Sum_probs=37.4
Q ss_pred cCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHH
Q 014555 279 VGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSS 324 (422)
Q Consensus 279 ~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~ 324 (422)
..|.+..+.-|.....+.+...|..+.+.|++.+..|+.+...+..
T Consensus 230 ~~pllNFl~~Ll~t~~~k~~~~f~~L~~~Y~~slkrd~~~~~~L~~ 275 (312)
T KOG3024|consen 230 EYPLLNFLHFLLETIQRKDLPLFLMLRVKYQPSLKRDQAYNEYLDR 275 (312)
T ss_pred ccchHHHHHHHHHHHhccccHHHHHHHHHccchhhhhHHHHHHHHH
Confidence 3456777788999999999999999999999999999876544443
No 179
>PF10155 DUF2363: Uncharacterized conserved protein (DUF2363); InterPro: IPR019312 This entry represents a region of 120 amino acids in proteins conserved from plants to humans. Their function is not known.
Probab=73.70 E-value=55 Score=27.70 Aligned_cols=119 Identities=19% Similarity=0.261 Sum_probs=72.7
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
+.||.=|.+.+..+...+. ..+....+.+..-.-.-.|.+..|..... .|......=|+++++.+.+
T Consensus 2 enNp~IA~~~l~~l~~s~~------------~~~yld~lv~~~~sl~s~EvVn~L~~~~~-~p~efl~~yI~~cI~~ce~ 68 (126)
T PF10155_consen 2 ENNPNIAIEILVKLINSPN------------FKEYLDVLVSMDMSLHSMEVVNRLTTSFS-LPQEFLHMYISNCIKSCES 68 (126)
T ss_pred CCcHHHHHHHHHHHcCCch------------HHHHHHHHHcCCCchhHHHHHHHHHcCCC-CcHHHHHHHHHHHHHHHHh
Confidence 4678889998888877541 23444555555555556666666666554 6788888888999998887
Q ss_pred CCCC--hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHH
Q 014555 99 IPGT--SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLT 151 (422)
Q Consensus 99 ~~~~--~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~ 151 (422)
+++. ....+++..-|++..-+++ ++.=..+-..+-.+-.+-.+..||..+.+
T Consensus 69 ~kd~~~q~R~VRlvcvfl~sLir~~-i~~~~~l~~evq~FClefs~i~Ea~~L~k 122 (126)
T PF10155_consen 69 IKDKYMQNRLVRLVCVFLQSLIRNK-IIDVEDLFIEVQAFCLEFSRIKEASALFK 122 (126)
T ss_pred hcccccccchhhhHHHHHHHHHHcC-CCchHHHHhhHHHHHHHHccHHHHHHHHH
Confidence 6643 2345666666666443333 22222234455555555556666655444
No 180
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=73.38 E-value=1.2e+02 Score=33.36 Aligned_cols=133 Identities=14% Similarity=-0.023 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
..++..|+.+..+.|.+++...++..+..+-++-..+.. ....-+.+. ...+.-+..++..+...-+ +
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~-----~~a~~L~~~-~~~eeA~~~~~~~l~~~p~-~----- 153 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI-----LMLRGVKRQ-QGIEAGRAEIELYFSGGSS-S----- 153 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH-----HHHHHHHHh-ccHHHHHHHHHHHhhcCCC-C-----
Confidence 447788999999999999999999988887765422222 111111111 1011122333333332111 1
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
..-...+|..+.+.|++++|.+++.+++. ...++... .+.........|+...|...|.+|-...
T Consensus 154 ~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--~~p~~~~~----~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 AREILLEAKSWDEIGQSEQADACFERLSR--QHPEFENG----YVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHhcchHHHHHHHHHHHh--cCCCcHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 22245889999999999999999999986 23333333 3334667888999999999999886543
No 181
>PF00392 GntR: Bacterial regulatory proteins, gntR family; InterPro: IPR000524 Many bacterial transcription regulation proteins bind DNA through a helix-turn-helix (HTH) motif, which can be classified into subfamilies on the basis of sequence similarities. The HTH GntR family has many members distributed among diverse bacterial groups that regulate various biological processes. It was named GntR after the Bacillus subtilis repressor of the gluconate operon []. Family members include GntR, HutC, KorA, NtaR, FadR, ExuR, FarR, DgoR and PhnF. The crystal structure of the FadR protein has been determined []. In general, these proteins contain a DNA-binding HTH domain at the N terminus, and an effector-binding or oligomerisation domain at the C terminus (IPR011711 from INTERPRO). The DNA-binding domain is well conserved in structure for the whole of the GntR family, consisting of a 3-helical bundle core with a small beta-sheet (wing); the GntR winged helix structure is similar to that found in several other transcriptional regulator families. The regions outside the DNA-binding domain are more variable and are consequently used to define GntR subfamilies []. This entry represents the N-terminal DNA-binding domain of the GntR family.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1HW1_B 1H9T_A 1HW2_A 1H9G_A 1E2X_A 3IHU_A 3C7J_A 2RA5_A 3BY6_C 3IC7_A ....
Probab=73.35 E-value=9.7 Score=27.74 Aligned_cols=52 Identities=19% Similarity=0.258 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 324 SLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
.+++.|+..-...-..|=+++ +...||+.+|+|..-|.+-+..|..+|.|.-
T Consensus 4 ~i~~~l~~~I~~g~~~~g~~lps~~~la~~~~vsr~tvr~al~~L~~~g~i~~ 56 (64)
T PF00392_consen 4 QIYDQLRQAILSGRLPPGDRLPSERELAERYGVSRTTVREALRRLEAEGLIER 56 (64)
T ss_dssp HHHHHHHHHHHTTSS-TTSBE--HHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHcCCCCCCCEeCCHHHHHHHhccCCcHHHHHHHHHHHCCcEEE
Confidence 344455555555555677899 9999999999999999999999999998853
No 182
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=73.10 E-value=99 Score=33.42 Aligned_cols=183 Identities=12% Similarity=0.018 Sum_probs=95.0
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+...||..|.+-++.++.= -.++..|+..|-+.+.+|.....+..-...++. .+.+ -=+-.+-++. .
T Consensus 233 ei~~aiq~y~eAvkldP~f-------~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn---~A~a-~gNla~iYye--q 299 (966)
T KOG4626|consen 233 EIWLAIQHYEEAVKLDPNF-------LDAYINLGNVYKEARIFDRAVSCYLRALNLRPN---HAVA-HGNLACIYYE--Q 299 (966)
T ss_pred hHHHHHHHHHHhhcCCCcc-------hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc---chhh-ccceEEEEec--c
Confidence 3567777777777665432 236777777777777777766665544432221 1110 0000000110 1
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
+-.++-++-++.+++. .-.|.-+ -..||.-+-+.|+..||...++..+.-+...-|...-+ .-+|.+.
T Consensus 300 G~ldlAI~~Ykral~~----~P~F~~A--y~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL------gni~~E~ 367 (966)
T KOG4626|consen 300 GLLDLAIDTYKRALEL----QPNFPDA--YNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL------GNIYREQ 367 (966)
T ss_pred ccHHHHHHHHHHHHhc----CCCchHH--HhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH------HHHHHHh
Confidence 1123334444444442 2334433 34778888888888888888877766554432322221 2355666
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 181 ~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
+.+..|-.+|.+|..+.. ..-+...- -|.++..+|++.+|..+|-|+.
T Consensus 368 ~~~e~A~~ly~~al~v~p------~~aaa~nN-La~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 368 GKIEEATRLYLKALEVFP------EFAAAHNN-LASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred ccchHHHHHHHHHHhhCh------hhhhhhhh-HHHHHHhcccHHHHHHHHHHHH
Confidence 777777777776655432 22211111 2334445666666666666664
No 183
>smart00418 HTH_ARSR helix_turn_helix, Arsenical Resistance Operon Repressor.
Probab=72.83 E-value=10 Score=26.65 Aligned_cols=45 Identities=11% Similarity=0.097 Sum_probs=36.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
-..+++.+|++.+|++...+-+.+.+|...|-+.-.-+...+...
T Consensus 8 ~~~~~~~~i~~~l~is~~~v~~~l~~L~~~g~i~~~~~~~~~~~~ 52 (66)
T smart00418 8 EGELCVCELAEILGLSQSTVSHHLKKLREAGLVESRREGKRVYYS 52 (66)
T ss_pred cCCccHHHHHHHHCCCHHHHHHHHHHHHHCCCeeeeecCCEEEEE
Confidence 456899999999999999999999999999999855444333333
No 184
>COG1522 Lrp Transcriptional regulators [Transcription]
Probab=72.70 E-value=6.3 Score=33.97 Aligned_cols=48 Identities=23% Similarity=0.392 Sum_probs=41.2
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
.-|+.+++.-.++++..||+.+|+|+..+-.-+-+|..+|-|.| .+|.
T Consensus 11 ~~IL~~L~~d~r~~~~eia~~lglS~~~v~~Ri~~L~~~GiI~~~~~~v~~ 61 (154)
T COG1522 11 RRILRLLQEDARISNAELAERVGLSPSTVLRRIKRLEEEGVIKGYTAVLDP 61 (154)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCceeeEEEEECH
Confidence 44566666667799999999999999999999999999999865 6775
No 185
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.69 E-value=1.8e+02 Score=33.35 Aligned_cols=165 Identities=15% Similarity=0.177 Sum_probs=93.6
Q ss_pred HHHHhhcCC-hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh-cccchhHHH-HHH
Q 014555 13 IAQAKEASN-PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF-SLIPKAKTA-KIV 89 (422)
Q Consensus 13 ~ak~~~~~~-~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~-~~~~k~~~~-k~v 89 (422)
..|+++..| |.+-|+.|.+|+-+.+.=++ -+.+..+.-+-+-.-|....+++|..|..|- +.+.--+++ .+-
T Consensus 990 tVkAfMtadLp~eLIELLEKIvL~~S~Fse-----~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~Ly 1064 (1666)
T KOG0985|consen 990 TVKAFMTADLPNELIELLEKIVLDNSVFSE-----NRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLY 1064 (1666)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhcCCccccc-----chhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHH
Confidence 568888888 78999999999977543222 2345555555555667778888888887765 222221211 111
Q ss_pred HHHHHHhhcCC-CChhHH-----HHHHHHHHHHHH--hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc
Q 014555 90 RGIIDAVAKIP-GTSELQ-----IALCKEMVQWTR--AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD 161 (422)
Q Consensus 90 ~~~l~~~~~~~-~~~~~~-----~~l~~~~i~~~~--~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~ 161 (422)
.....-+.+-. ++...+ +.=++...+++. ++.-.|= .||+--++.|-..+|.+.+- +.|
T Consensus 1065 EEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWs------qlakAQL~~~~v~dAieSyi-------kad 1131 (1666)
T KOG0985|consen 1065 EEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWS------QLAKAQLQGGLVKDAIESYI-------KAD 1131 (1666)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHH------HHHHHHHhcCchHHHHHHHH-------hcC
Confidence 11122111110 000111 011112222222 2334554 66777777887777764332 357
Q ss_pred cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 162 DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 162 ~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
|++.++|+ ++.+...|++...-.++..|++....
T Consensus 1132 Dps~y~eV----i~~a~~~~~~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1132 DPSNYLEV----IDVASRTGKYEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred CcHHHHHH----HHHHHhcCcHHHHHHHHHHHHHhhcC
Confidence 88888776 46778888888888888888765543
No 186
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=72.67 E-value=1.4e+02 Score=31.81 Aligned_cols=113 Identities=19% Similarity=0.173 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH--HhhC-CH
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLH--FSLR-NL 183 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~--~~~~-n~ 183 (422)
.++-+-|++.++..+ .-.-..++.-|+-+|.-.|+|++|.+.++..+.. + +...++= =|+. ++-+ ..
T Consensus 411 ~~i~~~fLeaa~~~~-~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~--Pnd~~lW-----NRLGAtLAN~~~s 480 (579)
T KOG1125|consen 411 AHIQELFLEAARQLP-TKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--K--PNDYLLW-----NRLGATLANGNRS 480 (579)
T ss_pred HHHHHHHHHHHHhCC-CCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--C--CchHHHH-----HHhhHHhcCCccc
Confidence 444455555554321 1122345778888888888999998888776532 1 1111111 1222 2222 44
Q ss_pred HHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 184 ~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..|-.+|++|..+. |..+.+++. -|+.+|-.|.|++|..+|++|..
T Consensus 481 ~EAIsAY~rALqLq-----P~yVR~RyN--lgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 481 EEAISAYNRALQLQ-----PGYVRVRYN--LGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHHHhcC-----CCeeeeehh--hhhhhhhhhhHHHHHHHHHHHHH
Confidence 66777888887764 555666555 79999999999999999999963
No 187
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=72.51 E-value=37 Score=32.06 Aligned_cols=79 Identities=14% Similarity=0.114 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHHHhhCCHH
Q 014555 106 QIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLV-DIDLLESKLHFSLRNLP 184 (422)
Q Consensus 106 ~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~-e~~l~~~~~~~~~~n~~ 184 (422)
.+++++..++....-+..=+...|...+|+.|+..|+|++|+++++.+. ..+..+.-..++ ++...-.+++...||..
T Consensus 157 iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~-~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~ 235 (247)
T PF11817_consen 157 IIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAA-SSYRREGWWSLLTEVLWRLLECAKRLGDVE 235 (247)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH-HHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 4666666666554434434445567799999999999999999999994 334444433333 33333344555666654
Q ss_pred H
Q 014555 185 K 185 (422)
Q Consensus 185 k 185 (422)
.
T Consensus 236 ~ 236 (247)
T PF11817_consen 236 D 236 (247)
T ss_pred H
Confidence 3
No 188
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=72.43 E-value=61 Score=30.89 Aligned_cols=115 Identities=14% Similarity=0.073 Sum_probs=75.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHH
Q 014555 133 LAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDL 212 (422)
Q Consensus 133 La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~ 212 (422)
+++.....|+|.+|...+.+... ....|...... ..-.|...|++..|+..|.++..+.-. +|.+.+
T Consensus 106 ~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~----lgaaldq~Gr~~~Ar~ay~qAl~L~~~---~p~~~n---- 172 (257)
T COG5010 106 QGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNL----LGAALDQLGRFDEARRAYRQALELAPN---EPSIAN---- 172 (257)
T ss_pred HHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhH----HHHHHHHccChhHHHHHHHHHHHhccC---Cchhhh----
Confidence 67778889999999988887652 12234333222 344677899999999999999877532 333332
Q ss_pred HHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccc
Q 014555 213 QSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADD 265 (422)
Q Consensus 213 ~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~e 265 (422)
--|..+.-++|+++|..++..++.... .++ .+..-+.++..+.+..++
T Consensus 173 Nlgms~~L~gd~~~A~~lll~a~l~~~--ad~---~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 173 NLGMSLLLRGDLEDAETLLLPAYLSPA--ADS---RVRQNLALVVGLQGDFRE 220 (257)
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHhCCC--Cch---HHHHHHHHHHhhcCChHH
Confidence 246667789999999999999976332 222 233345555555554433
No 189
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=71.61 E-value=17 Score=26.50 Aligned_cols=55 Identities=16% Similarity=0.096 Sum_probs=42.3
Q ss_pred HHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 175 KLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 175 ~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
.+|+..+++.+|...++.+...... ........|.++...|+|..|...|-.+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~-------~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPD-------DPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcc-------cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4788999999999998887766321 223345588889999999999988887764
No 190
>PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets. The winged helix motif consists of two wings (W1, W2), three alpha helices (H1, H2, H3) and three beta-sheets (S1, S2, S3) arranged in the order H1-S1-H2-H3-S2-W1-S3-W2 []. The DNA-recognition helix makes sequence-specific DNA contacts with the major groove of DNA, while the wings make different DNA contacts, often with the minor groove or the backbone of DNA. Several winged-helix proteins display an exposed patch of hydrophobic residues thought to mediate protein-protein interactions. This entry represents a subset of the winged helix domain superfamily which is predominantly found in bacterial proteins, though there are also some archaeal and eukaryotic examples. This domain is commonly found in the biotin (vitamin H) repressor protein BirA which regulates transcription of the biotin operon []. It is also found in other proteins including regulators of amino acid biosynthsis such as LysM [], and regulators of carbohydrate metabolisms such as LicR and FrvR [, ].; PDB: 1HXD_B 2EWN_B 1BIA_A 1BIB_A 1J5Y_A 3V7S_A 3V7C_A 3RKW_A 3RIR_A 3RKX_A ....
Probab=71.27 E-value=11 Score=26.41 Aligned_cols=41 Identities=10% Similarity=0.229 Sum_probs=31.3
Q ss_pred HHHHHHhh-cccccccchhHHHHhCCChHHHHHHHHhhhhcC
Q 014555 331 EQNLCRLI-EPYSRVEIAHIAELIELPIDHVEKKLSQMILDK 371 (422)
Q Consensus 331 ~~~l~~i~-~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g 371 (422)
...|+.++ +.=..|+.++||+.||+|..-|.+.+..+-..|
T Consensus 2 ~~~il~~L~~~~~~it~~eLa~~l~vS~rTi~~~i~~L~~~~ 43 (55)
T PF08279_consen 2 QKQILKLLLESKEPITAKELAEELGVSRRTIRRDIKELREWG 43 (55)
T ss_dssp HHHHHHHHHHTTTSBEHHHHHHHCTS-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 34455555 332349999999999999999999999998777
No 191
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=71.24 E-value=1.6e+02 Score=32.07 Aligned_cols=160 Identities=18% Similarity=0.137 Sum_probs=89.0
Q ss_pred HHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHH
Q 014555 54 SDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARL 133 (422)
Q Consensus 54 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~L 133 (422)
++.|.+.+.++-....+.+...-++. . ++|=.-.-++.+.-++.+.-..++...+..|.....+|+ ..
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~---k---~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwl------M~ 590 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPC---K---KSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWL------MY 590 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccc---h---hHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHH------HH
Confidence 44555555555555555544443321 1 111111222333323333345556666665544445666 66
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHH
Q 014555 134 AALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQ 213 (422)
Q Consensus 134 a~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~ 213 (422)
|+-+...||...|..+|...... ...--++.|.-+++-.....+.+|+.++.+|+..+. .++ +.+-
T Consensus 591 ake~w~agdv~~ar~il~~af~~------~pnseeiwlaavKle~en~e~eraR~llakar~~sg----TeR----v~mK 656 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEA------NPNSEEIWLAAVKLEFENDELERARDLLAKARSISG----TER----VWMK 656 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHh------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCC----cch----hhHH
Confidence 66677778888888777766432 223456667677788888888999998888877532 112 2233
Q ss_pred HHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 214 SGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 214 ~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
+..+.-..++..+|.+..=++.+.|.
T Consensus 657 s~~~er~ld~~eeA~rllEe~lk~fp 682 (913)
T KOG0495|consen 657 SANLERYLDNVEEALRLLEEALKSFP 682 (913)
T ss_pred HhHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 44444455666777766666655554
No 192
>PF00325 Crp: Bacterial regulatory proteins, crp family; InterPro: IPR001808 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. This family groups together a range of proteins, including anr, crp, clp, cysR, fixK, flp, fnr, fnrN, hlyX and ntcA [, ]. Within this family, the HTH motif is situated towards the C terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 2OZ6_A 1CGP_B 2GZW_C 1O3T_B 3ROU_A 2CGP_A 3RDI_A 1I5Z_A 3IYD_H 3FWE_B ....
Probab=70.82 E-value=6.6 Score=24.82 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=24.7
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
++-.+||..+|++.+-|-+.+.++-.+|.|
T Consensus 3 mtr~diA~~lG~t~ETVSR~l~~l~~~glI 32 (32)
T PF00325_consen 3 MTRQDIADYLGLTRETVSRILKKLERQGLI 32 (32)
T ss_dssp --HHHHHHHHTS-HHHHHHHHHHHHHTTSE
T ss_pred cCHHHHHHHhCCcHHHHHHHHHHHHHcCCC
Confidence 566899999999999999999999988865
No 193
>TIGR02010 IscR iron-sulfur cluster assembly transcription factor IscR. This model describes IscR, an iron-sulfur binding transcription factor of the ISC iron-sulfur cluster assembly system.
Probab=70.13 E-value=9.4 Score=32.51 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=42.3
Q ss_pred HHHHHhhccc--ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 332 QNLCRLIEPY--SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 332 ~~l~~i~~pY--s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+.+..+.... ..++.++||+.+++|...+++.+.+|...|-+...=....|+.-..
T Consensus 12 ~~l~~La~~~~~~~~s~~~ia~~~~ip~~~l~kil~~L~~~glv~s~~G~~Ggy~l~~ 69 (135)
T TIGR02010 12 TAMLDLALNAETGPVTLADISERQGISLSYLEQLFAKLRKAGLVKSVRGPGGGYQLGR 69 (135)
T ss_pred HHHHHHHhCCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEeCCCCCEeccC
Confidence 4444554332 3699999999999999999999999999999976545555654333
No 194
>cd00092 HTH_CRP helix_turn_helix, cAMP Regulatory protein C-terminus; DNA binding domain of prokaryotic regulatory proteins belonging to the catabolite activator protein family.
Probab=69.96 E-value=11 Score=27.30 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=31.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
..++..+||+.+|++...+.+.+.+|...|.|..
T Consensus 24 ~~~s~~ela~~~g~s~~tv~r~l~~L~~~g~i~~ 57 (67)
T cd00092 24 LPLTRQEIADYLGLTRETVSRTLKELEEEGLISR 57 (67)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 4589999999999999999999999999988864
No 195
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=69.89 E-value=67 Score=28.09 Aligned_cols=71 Identities=17% Similarity=0.140 Sum_probs=52.7
Q ss_pred chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 163 KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 163 ~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
.......+.....++...|++.+|...+.++...... ++. .+.....-|..+...|+|..|...|-.+...
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PND-RSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cch-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3445556677788999999999999999988665322 111 2345566788888999999999999888764
No 196
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=69.76 E-value=32 Score=34.99 Aligned_cols=168 Identities=13% Similarity=0.183 Sum_probs=91.1
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhhhhccC-------------ChhHHHHHHHHHHHHHHhcCccchhhhhcccccccc
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEAFNALE-------------DPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQY 278 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~-------------~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~ 278 (422)
.+-|-.|+.-|+|.+|-+-|..+........ +.++-+. +.+++-.++..+.-+..-+.+...-.|
T Consensus 276 Y~VGFayLmmrryadai~~F~niLlyIqrtks~~~~~~y~~d~inKq~eqm--~~llai~l~~yPq~iDESi~s~l~Ek~ 353 (525)
T KOG3677|consen 276 YQVGFAYLMMRRYADAIRVFLNILLYIQRTKSMFSRTTYQYDMINKQNEQM--HHLLAICLSMYPQMIDESIHSQLAEKY 353 (525)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhHhhhhhhHHHH--HHHHHHHHHhCchhhhHHHHHHHHHHh
Confidence 4578888899999999999987653221110 1122222 333333333322112211222211122
Q ss_pred cCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhh---------------hcChhHHHhHHHHHHHHH----HHHHHHhhc
Q 014555 279 VGPELDAMKAVADAHSKRSLKLFETALRDFKAQL---------------EEDPIVHRHLSSLYDTLL----EQNLCRLIE 339 (422)
Q Consensus 279 ~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l---------------~~D~~l~~~~~~L~~~i~----~~~l~~i~~ 339 (422)
-++.++ .++++...|.+...--.+.+ ..+|++++ +..+...|. .-.++.+.+
T Consensus 354 ~d~ml~--------mqng~~q~~ks~f~y~cpkflsp~~~~~dgv~~~y~kePl~~q-lq~fld~v~qq~dl~~~rsylk 424 (525)
T KOG3677|consen 354 GDKMLP--------MQNGDPQVFKSLFSYLCPKFLSPVVPNYDGVLPNYHKEPLLQQ-LQVFLDEVSQQADLPTIRSYLK 424 (525)
T ss_pred cchhhh--------hhcCChHHHHHHHHHcCccccCCCCcccccccccccccHHHHH-HHHHhHHHhhhccchHHHHHHH
Confidence 222111 14477777765543322222 34555543 233333343 446788888
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhh-----------cCCceeeee-cCCCEEEEecCC
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMIL-----------DKKFAGTLD-QGVGCLIIFEDP 390 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~-----------~g~i~gkID-q~~g~v~~~~~~ 390 (422)
-|++....-+|..++++.++=.+.+.+++. .|.....++ ++..-|-|+-+.
T Consensus 425 lyTt~P~kkla~F~D~~d~~~dk~li~Ll~~khkm~nlv~~sg~s~~d~~f~~~s~idfyid~ 487 (525)
T KOG3677|consen 425 LYTTLPVKKLASFLDLTDQERDKFLIQLLVFKHKMKNLVWTSGPSDLDDAFFSRSEIDFYIDK 487 (525)
T ss_pred HHHhccHHHhhhccCCchhhhhhhHHHHHHHHHHHHHHHHhcCCccccccccCcceeeEEech
Confidence 899999999999999998886666666553 444445555 455567776543
No 197
>PRK15331 chaperone protein SicA; Provisional
Probab=69.33 E-value=60 Score=28.83 Aligned_cols=93 Identities=18% Similarity=0.029 Sum_probs=68.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
..|.-+...|++++|..+.+-|.. .|.. --++.+--.-++..+|++.+|-..|..|-.+....|.| .
T Consensus 42 ~~Ay~~y~~Gk~~eA~~~F~~L~~----~d~~--n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p-------~ 108 (165)
T PRK15331 42 AHAYEFYNQGRLDEAETFFRFLCI----YDFY--NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRP-------V 108 (165)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH----hCcC--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCc-------c
Confidence 455667889999999988887743 1211 12344445668889999999999999887776555533 2
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
.++|.-++.-|+-..|...|..+...
T Consensus 109 f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 109 FFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred chHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 45888888999999999999988773
No 198
>smart00419 HTH_CRP helix_turn_helix, cAMP Regulatory protein.
Probab=69.30 E-value=6.9 Score=26.19 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=29.6
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.++..+||+.+|++...+-+.+.+|...|-+.
T Consensus 8 ~~s~~~la~~l~~s~~tv~~~l~~L~~~g~l~ 39 (48)
T smart00419 8 PLTRQEIAELLGLTRETVSRTLKRLEKEGLIS 39 (48)
T ss_pred ccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE
Confidence 47889999999999999999999999999885
No 199
>PF01022 HTH_5: Bacterial regulatory protein, arsR family; InterPro: IPR001845 Bacterial transcription regulatory proteins that bind DNA via a helix-turn-helix (HTH) motif can be grouped into families on the basis of sequence similarities. One such group, termed arsR, includes several proteins that appear to dissociate from DNA in the presence of metal ions: arsR, which functions as a transcriptional repressor of an arsenic resistance operon; smtB from Synechococcus sp. (strain PCC 7942), which acts as a transcriptional repressor of the smtA gene that codes for a metallothionein; cadC, a protein required for cadmium-resistance; and hypothetical protein yqcJ from Bacillus subtilis. The HTH motif is thought to be located in the central part of these proteins []. The motif is characterised by a number of well-conserved residues: at its N-terminal extremity is a cysteine residue; a second Cys is found in arsR and cadC, but not in smtA; and at the C terminus lie one or two histidines. These residues may be involved in metal-binding (Zn in smtB; metal-oxyanions such as arsenite, antimonite and arsenate for arsR; and cadmium for cadC) []. It is believed that binding of a metal ion could induce a conformational change that would prevent the protein from binding DNA []. The crystal structure of the cyanobacterial smtB shows a fold of five alpha-helices (H) and a pair of antiparallel beta-strands (B) in the topology H1-H2-H3-H4-B1-B2-H5. Helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing as in other wHTH, such as the dtxR-type or the merR-type. Helix 4 is termed the recognition helix, like in other HTHs where it binds the DNA major groove. Most arsR/smtB-like metalloregulators form homodimers []. The dimer interface is formed by helix 5 and an N-terminal part []. Two distinct metal-binding sites have been identified. The first site comprises cysteine thiolates located in the HTH in helix 3 and for some cases in the N terminus, called the alpha3(N) site []. The second metal-binding site is located in helix 5 (and C terminus) and is called the alpha5(C) site. The alpha3N site binds large thiophilic, toxic metals including Cd, Pb, and Bi, as in S. aureus cadC. ArsR lacks the N-terminal arm and its alpha3 site coordinates smaller thiophilic ions like As and Sb. The alpha5 site contains carboxylate and imidazole ligands and interacts preferentially with biologically required metal ions including Zn, Co, and Ni. ArsR-type metalloregulators contain one of these sites, both, or other potential metal-binding sites [, ]. Binding of metal ions to these sites leads to allosteric changes that can derepress the operator/promotor DNA. The metal-inducible operons contain one or two imperfect 12-2-12 inverted repeats, which can be recognised by multimeric arsR-type metalloregulators. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3CUO_A 1U2W_C 3F72_C 3F6V_A 3JTH_B 2P4W_B 1KU9_B 2LKP_B 1SMT_A 1R22_B ....
Probab=69.06 E-value=14 Score=25.15 Aligned_cols=33 Identities=15% Similarity=0.215 Sum_probs=29.3
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
...+..+|++.+|++...+-+.|..|...|-+.
T Consensus 14 ~~~~~~el~~~l~~s~~~vs~hL~~L~~~glV~ 46 (47)
T PF01022_consen 14 GPLTVSELAEELGLSQSTVSHHLKKLREAGLVE 46 (47)
T ss_dssp SSEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred CCCchhhHHHhccccchHHHHHHHHHHHCcCee
Confidence 678899999999999999999999999998764
No 200
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=69.05 E-value=86 Score=28.02 Aligned_cols=63 Identities=6% Similarity=0.064 Sum_probs=39.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAA 193 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a 193 (422)
+.+.++.+..|||......+.+...-+.+.+|....-.+-..+.-.++..+||..|-..+-.+
T Consensus 77 l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 77 LNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 355555666677777777666665554444444444445555677888889998875555443
No 201
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=68.96 E-value=55 Score=25.78 Aligned_cols=28 Identities=11% Similarity=0.018 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
+.+...+..+.+.|+++...+.+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 30 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLK 30 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4566777778888888877777666654
No 202
>TIGR01764 excise DNA binding domain, excisionase family. An excisionase, or Xis protein, is a small protein that binds and promotes excisive recombination; it is not enzymatically active. This model represents a number of putative excisionases and related proteins from temperate phage, plasmids, and transposons, as well as DNA binding domains of other proteins, such as a DNA modification methylase. This model identifies mostly small proteins and N-terminal regions of large proteins, but some proteins appear to have two copies. This domain appears similar, in both sequence and predicted secondary structure (PSIPRED) to the MerR family of transcriptional regulators (pfam00376).
Probab=68.73 E-value=16 Score=24.30 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=27.6
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+++.++|+.+|++...+. +++.+|.|.+... .+...+
T Consensus 2 lt~~e~a~~lgis~~ti~----~~~~~g~i~~~~~--g~~~~~ 38 (49)
T TIGR01764 2 LTVEEAAEYLGVSKDTVY----RLIHEGELPAYRV--GRHYRI 38 (49)
T ss_pred CCHHHHHHHHCCCHHHHH----HHHHcCCCCeEEe--CCeEEE
Confidence 578899999999988777 5567899988543 344444
No 203
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=68.64 E-value=32 Score=34.53 Aligned_cols=107 Identities=20% Similarity=0.143 Sum_probs=72.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
+|++-++.-.++.+++.. .+---++++.+.+..--.+.+...+.++..+-+.++-.++++|.++++.+. +|.+--++.
T Consensus 88 nlar~~e~l~~f~kt~~y-~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~-D~~LElqvc 165 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISY-CKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNND-DAMLELQVC 165 (518)
T ss_pred HHHHHHHHHHHhhhHHHH-HHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccC-Cceeeeehh
Confidence 555555555556665432 222223344433322234455567889999999999999999999998887 777777777
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
..-|-++..-+||.+|.-+--.|++--.+
T Consensus 166 v~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 166 VSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 77888888889999988665555543333
No 204
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.31 E-value=1.3e+02 Score=29.93 Aligned_cols=120 Identities=15% Similarity=0.181 Sum_probs=75.1
Q ss_pred HHHHHHHHHhc-hhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh--c--chhHHhhHHHHHHHHHHH
Q 014555 64 QDLCNLLTQLR-PFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRA--E--KRTFLRQRVEARLAALLM 138 (422)
Q Consensus 64 ~~l~~~~~~l~-~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~--~--~r~~lr~~l~~~La~~~~ 138 (422)
+.+.+++..+. +|.+.+..-...++.-.+.+.+ .+ .+.-++..+..++..+. + .-+++ ....+.+++
T Consensus 55 ~~~l~lY~NFvsefe~kINplslvei~l~~~~~~---~D-~~~al~~Le~i~~~~~~~~e~~av~~~----~t~~~r~~L 126 (380)
T KOG2908|consen 55 DLLLQLYLNFVSEFETKINPLSLVEILLVVSEQI---SD-KDEALEFLEKIIEKLKEYKEPDAVIYI----LTEIARLKL 126 (380)
T ss_pred hHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHh---cc-HHHHHHHHHHHHHHHHhhccchhHHHH----HHHHHHHHH
Confidence 45555554433 3335454444444444444433 33 24456777777776543 2 22233 457788888
Q ss_pred hcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 139 ESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 139 ~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
..||..++-+.|.+....+...+ ++....-+|..-+++|-..||+... |..|.
T Consensus 127 ~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk~~~d~a~y---Yr~~L 181 (380)
T KOG2908|consen 127 EINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYKKIGDFASY---YRHAL 181 (380)
T ss_pred hcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHHHHHhHHHH---HHHHH
Confidence 99999999998888877666554 3456667899999999999998654 55443
No 205
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=68.10 E-value=39 Score=26.62 Aligned_cols=64 Identities=23% Similarity=0.180 Sum_probs=47.5
Q ss_pred HhcccHHHHHHHHHHHHHHHhhhccch---hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC
Q 014555 138 MESREYTEALTLLTSLVKEVRRLDDKL---LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY 201 (422)
Q Consensus 138 ~~~g~~~~A~~~l~~l~~e~~~~~~~~---~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~ 201 (422)
...|||.+|.+.|.....-........ ..-...+..+.++...|++.+|...++.|-.++....
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 457899999999988876655544433 2333455677889999999999999999887776544
No 206
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=68.07 E-value=2.2e+02 Score=32.33 Aligned_cols=227 Identities=12% Similarity=0.126 Sum_probs=123.1
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch---------hhcccch-----h
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP---------FFSLIPK-----A 83 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~---------~~~~~~k-----~ 83 (422)
.+.|.+.+.+.....++.+..+. ....+.+++++.+-++|+++....++..-.+ +.+ +.+ +
T Consensus 282 fK~dy~~v~~la~~ai~~t~~~~----~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G-lgQm~i~~~ 356 (1018)
T KOG2002|consen 282 FKKDYERVWHLAEHAIKNTENKS----IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG-LGQMYIKRG 356 (1018)
T ss_pred hcccHHHHHHHHHHHHHhhhhhH----HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc-hhHHHHHhc
Confidence 45677888888888777654332 3456888999999999999998777764333 222 222 2
Q ss_pred HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH---H---hcchhHH---------hhHHHHHHHHHHHhcccHHHHHH
Q 014555 84 KTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT---R---AEKRTFL---------RQRVEARLAALLMESREYTEALT 148 (422)
Q Consensus 84 ~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~---~---~~~r~~l---------r~~l~~~La~~~~~~g~~~~A~~ 148 (422)
-.+.++...-..+...|+..+ -+.++-.+...- . ......+ -.+.=+.||.+|+...-|. ++.
T Consensus 357 dle~s~~~fEkv~k~~p~~~e-tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 357 DLEESKFCFEKVLKQLPNNYE-TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred hHHHHHHHHHHHHHhCcchHH-HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHH-HHH
Confidence 223444444444444565321 122211111110 0 0001111 1112347888887764443 477
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC-CC--chhhHHHHHHHHHHhchhhcHH
Q 014555 149 LLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY-VP--PAQQGTIDLQSGILHAEEKDYK 225 (422)
Q Consensus 149 ~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~-~~--~~i~a~i~~~~g~~~~~~~dy~ 225 (422)
.++.....+..... ..-.|+.=-..-+++..|++.+|...+.+|.......- .+ ..+.-.++.--|...-+-.++.
T Consensus 435 ~~~~A~d~L~~~~~-~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~ 513 (1018)
T KOG2002|consen 435 AYGNALDILESKGK-QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTE 513 (1018)
T ss_pred HHHHHHHHHHHcCC-CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhh
Confidence 77777655543322 24455555566788999999999999998876622111 01 1122222333344444455677
Q ss_pred HHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHH
Q 014555 226 TAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIM 259 (422)
Q Consensus 226 ~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL 259 (422)
.|...|-++...+ |.++++ |+-|.+|.
T Consensus 514 ~A~e~Yk~Ilkeh-----p~YId~--ylRl~~ma 540 (1018)
T KOG2002|consen 514 VAEEMYKSILKEH-----PGYIDA--YLRLGCMA 540 (1018)
T ss_pred HHHHHHHHHHHHC-----chhHHH--HHHhhHHH
Confidence 7776666665433 455555 55554444
No 207
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=68.06 E-value=1.4e+02 Score=30.02 Aligned_cols=166 Identities=13% Similarity=0.091 Sum_probs=88.1
Q ss_pred HHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHH--------HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH
Q 014555 14 AQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKEL--------AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK 84 (422)
Q Consensus 14 ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~ 84 (422)
+--+.+. ..++|..-|..|++.+++.+......++ .+.+.++-.+..||+....++++++..-- |=.+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~---~Wda 189 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ---PWDA 189 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC---cchh
Confidence 3334444 5899999999999876544332333332 33455666667788888888888877521 1111
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH--h-cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHH------
Q 014555 85 TAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTR--A-EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK------ 155 (422)
Q Consensus 85 ~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~--~-~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~------ 155 (422)
. ++.+=.-+-...+ +.+ .-+..+....+ + +-.. --+.+.+++..||.++++..+.+.++
T Consensus 190 ~---l~~~Rakc~i~~~--e~k-~AI~Dlk~askLs~DnTe~------~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 190 S---LRQARAKCYIAEG--EPK-KAIHDLKQASKLSQDNTEG------HYKISQLLYTVGDAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred H---HHHHHHHHHHhcC--cHH-HHHHHHHHHHhccccchHH------HHHHHHHHHhhhhHHHHHHHHHHHHccCcchh
Confidence 1 1111111110111 111 12222222221 1 1112 33778889999999998766655432
Q ss_pred HHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 156 EVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 156 e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
.|+...-+.-++.-.+.-++-....++|..+-...++..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vl 296 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVL 296 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 121111223355556666677777788877765555443
No 208
>PRK11014 transcriptional repressor NsrR; Provisional
Probab=67.99 E-value=12 Score=32.07 Aligned_cols=51 Identities=12% Similarity=0.102 Sum_probs=43.2
Q ss_pred hcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 338 IEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 338 ~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
..|=..++...||+.+|+|...+++.+.++-..|.|..+=-...|+.....
T Consensus 20 ~~~g~~~s~~~ia~~~~is~~~vrk~l~~L~~~Glv~s~~G~~GG~~l~~~ 70 (141)
T PRK11014 20 LPEGRMTSISEVTEVYGVSRNHMVKIINQLSRAGYVTAVRGKNGGIRLGKP 70 (141)
T ss_pred CCCCCccCHHHHHHHHCcCHHHHHHHHHHHHhCCEEEEecCCCCCeeecCC
Confidence 345467899999999999999999999999999999888777777766543
No 209
>COG1497 Predicted transcriptional regulator [Transcription]
Probab=67.76 E-value=32 Score=32.42 Aligned_cols=73 Identities=16% Similarity=0.254 Sum_probs=52.6
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHHH
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDS 412 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~~ 412 (422)
.|..+....-++.-++||+.+|++++-|-.++-.|+.+|.|.- ...|--+++++ -++-+.+|+.++..-++.
T Consensus 15 IL~ei~~~qp~v~q~eIA~~lgiT~QaVsehiK~Lv~eG~i~~---~gR~~Y~iTkk-----G~e~l~~~~~dlr~f~~e 86 (260)
T COG1497 15 ILSEIAVRQPRVKQKEIAKKLGITLQAVSEHIKELVKEGLIEK---EGRGEYEITKK-----GAEWLLEQLSDLRRFSEE 86 (260)
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHHHHHhccceee---cCCeeEEEehh-----HHHHHHHHHHHHHHHHHH
Confidence 3444444456889999999999999999999999999998764 34444455443 246677777777666555
Q ss_pred H
Q 014555 413 L 413 (422)
Q Consensus 413 l 413 (422)
.
T Consensus 87 v 87 (260)
T COG1497 87 V 87 (260)
T ss_pred H
Confidence 4
No 210
>TIGR03879 near_KaiC_dom probable regulatory domain. This model describes a common domain shared by two different families of proteins, each of which occurs regularly next to its corresponding partner family, a probable regulatory with homology to KaiC. By implication, this protein family likely is also involved in sensory transduction and/or regulation.
Probab=67.69 E-value=7.6 Score=29.54 Aligned_cols=35 Identities=14% Similarity=0.043 Sum_probs=30.8
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
..+...|..+||+.+|+|+.-|...+.++...|.+
T Consensus 28 R~~eGlS~kEIAe~LGIS~~TVk~~l~~~~~~~~~ 62 (73)
T TIGR03879 28 REEAGKTASEIAEELGRTEQTVRNHLKGETKAGGL 62 (73)
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhcCcccchH
Confidence 55688999999999999999999999988777754
No 211
>PF12840 HTH_20: Helix-turn-helix domain; PDB: 1ULY_A 2CWE_A 1Y0U_B 2QUF_B 2QLZ_C 2OQG_B 2ZKZ_C 3PQK_A 3PQJ_D 3F6O_B ....
Probab=67.49 E-value=14 Score=26.66 Aligned_cols=42 Identities=14% Similarity=0.209 Sum_probs=35.0
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
|++.+......++..||+.+|++...+-..|..|...|.|..
T Consensus 15 Il~~L~~~~~~t~~ela~~l~~~~~t~s~hL~~L~~aGli~~ 56 (61)
T PF12840_consen 15 ILRLLASNGPMTVSELAEELGISQSTVSYHLKKLEEAGLIEV 56 (61)
T ss_dssp HHHHHHHCSTBEHHHHHHHHTS-HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHhcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEE
Confidence 334446678899999999999999999999999999998865
No 212
>PF09339 HTH_IclR: IclR helix-turn-helix domain; InterPro: IPR005471 The many bacterial transcription regulation proteins which bind DNA through a 'helix-turn-helix' motif can be classified into subfamilies on the basis of sequence similarities. One of these subfamilies, called 'iclR', groups several proteins including: gylR, a possible activator protein for the gylABX glycerol operon in Streptomyces. iclR, the repressor of the acetate operon (also known as glyoxylate bypass operon) in Escherichia coli and Salmonella typhimurium. These proteins have a Helix-Turn-Helix motif at the N terminus that is similar to that of other DNA-binding proteins [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1MKM_A 3MQ0_A 3R4K_A 2G7U_C 2O0Y_C 2XRO_F 2XRN_B 2IA2_D.
Probab=67.16 E-value=13 Score=25.79 Aligned_cols=41 Identities=15% Similarity=0.269 Sum_probs=32.1
Q ss_pred HHHhhcc-cccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 334 LCRLIEP-YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 334 l~~i~~p-Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
++.++.. -..+++.+||+.+|+|..-+-+++..|...|-+.
T Consensus 8 iL~~l~~~~~~~t~~eia~~~gl~~stv~r~L~tL~~~g~v~ 49 (52)
T PF09339_consen 8 ILEALAESGGPLTLSEIARALGLPKSTVHRLLQTLVEEGYVE 49 (52)
T ss_dssp HHHCHHCTBSCEEHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCcCee
Confidence 3444433 3458999999999999999999999999988763
No 213
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.13 E-value=1.2e+02 Score=28.99 Aligned_cols=148 Identities=9% Similarity=0.107 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLI-PKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~-~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
|+..+.+-+..+...|.+..+++..-+...-.- +...++-.+-+.-..+... .++.-+.+|+.......+++|.---
T Consensus 72 KayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv--~Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 72 KAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENV--KPDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHhccchHHHH
Confidence 455555566666666666666555444333100 1122223333433333321 1345578888888877766665442
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
--+-.+.++++..-..|.||...+.+........+.-..--..++..+-+|+-..|+..|+..+..+..+.
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip 220 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIP 220 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCc
Confidence 22234788888888899999877766533322222100011123334558888899988887776655443
No 214
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=67.01 E-value=97 Score=32.20 Aligned_cols=104 Identities=13% Similarity=0.071 Sum_probs=68.2
Q ss_pred hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 119 AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 119 ~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
++.|+|+ .|++.|.+.+..++|.+.......- .|. --..+...+++|-..++..+|..+|++.-.+..
T Consensus 430 nDsRlw~------aLG~CY~kl~~~~eAiKCykrai~~----~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~ 497 (559)
T KOG1155|consen 430 NDSRLWV------ALGECYEKLNRLEEAIKCYKRAILL----GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSE 497 (559)
T ss_pred CchHHHH------HHHHHHHHhccHHHHHHHHHHHHhc----ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3567776 8999999999999999888775421 121 112334457899999999999999998765432
Q ss_pred --cCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 199 --AIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 199 --~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+.-.|..+.+.+- -+.+...-+||+.|..|--.+..
T Consensus 498 ~eg~~~~~t~ka~~f--LA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 498 LEGEIDDETIKARLF--LAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred hhcccchHHHHHHHH--HHHHHHhhcchHHHHHHHHHHhc
Confidence 2221223333333 45566667888888766655554
No 215
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=66.98 E-value=64 Score=33.66 Aligned_cols=105 Identities=17% Similarity=0.203 Sum_probs=67.2
Q ss_pred cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh
Q 014555 142 EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE 221 (422)
Q Consensus 142 ~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~ 221 (422)
+...|.++|...+.. .+++.+. .+.+.|++...||++.|-..+++|....+. =|.+......=-|..|+..
T Consensus 248 ~~~~a~~lL~~~~~~----yP~s~lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~---~~Ql~~l~~~El~w~~~~~ 318 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR----YPNSALF--LFFEGRLERLKGNLEEAIESFERAIESQSE---WKQLHHLCYFELAWCHMFQ 318 (468)
T ss_pred CHHHHHHHHHHHHHh----CCCcHHH--HHHHHHHHHHhcCHHHHHHHHHHhccchhh---HHhHHHHHHHHHHHHHHHH
Confidence 456666666665533 3333333 455799999999999999999877643322 1245554455567788899
Q ss_pred hcHHHHHHHHHHHhhhhhccCChhHHHHH-HHHHHHHHHhc
Q 014555 222 KDYKTAYSYFFEAFEAFNALEDPRAVFSL-KYMLLCKIMVS 261 (422)
Q Consensus 222 ~dy~~A~~~f~ea~~~~~~~~~~~~~~~l-ky~vL~~lL~~ 261 (422)
.||.+|+.+|....+ ...|-.++ .|+.-|+++..
T Consensus 319 ~~w~~A~~~f~~L~~------~s~WSka~Y~Y~~a~c~~~l 353 (468)
T PF10300_consen 319 HDWEEAAEYFLRLLK------ESKWSKAFYAYLAAACLLML 353 (468)
T ss_pred chHHHHHHHHHHHHh------ccccHHHHHHHHHHHHHHhh
Confidence 999999998887754 23444444 35444444443
No 216
>PF06163 DUF977: Bacterial protein of unknown function (DUF977); InterPro: IPR010382 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=66.86 E-value=15 Score=31.02 Aligned_cols=45 Identities=11% Similarity=0.251 Sum_probs=40.1
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
..-|+.+++..-++|+..+...+|++..-++.++.+++..|.|.-
T Consensus 14 k~rIvElVRe~GRiTi~ql~~~TGasR~Tvk~~lreLVa~G~l~~ 58 (127)
T PF06163_consen 14 KARIVELVREHGRITIKQLVAKTGASRNTVKRYLRELVARGDLYR 58 (127)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCCeEe
Confidence 445667778889999999999999999999999999999998853
No 217
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.56 E-value=42 Score=32.16 Aligned_cols=105 Identities=14% Similarity=0.099 Sum_probs=74.7
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....|-.+- +.+...|.+.|++-++.-+++. .+-.|.+-|++.++.+|++++....+..+.+-+++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~----~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~--------- 210 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNST----YTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPK--------- 210 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc----ccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCC---------
Confidence 455666654 4467999999999998855432 55668889999999999999988777666553332
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD 161 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~ 161 (422)
.|..++ . -.||+....+.|+.++|...|+.+.++-.+.+
T Consensus 211 ----------s~KApd----------------a--------llKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 211 ----------SPKAPD----------------A--------LLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred ----------CCCChH----------------H--------HHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 222111 1 34778888888899999999999887765543
No 218
>PF13601 HTH_34: Winged helix DNA-binding domain; PDB: 1UB9_A.
Probab=66.51 E-value=36 Score=26.21 Aligned_cols=70 Identities=7% Similarity=0.082 Sum_probs=46.7
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC----EEEEecCCchhhHHHHHHHHHHH
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG----CLIIFEDPKADAIYPATLETISN 405 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g----~v~~~~~~~~~~~~~~l~~~~~~ 405 (422)
|+.+...-..++|++|.+.+|++..-+-..+..+...|-|.-+-...++ ++.+++. -.+.|..-.+|.++
T Consensus 5 Il~~L~~~~~~~f~~L~~~l~lt~g~Ls~hL~~Le~~GyV~~~k~~~~~~p~t~~~lT~~--Gr~~~~~~~~~L~~ 78 (80)
T PF13601_consen 5 ILALLYANEEATFSELKEELGLTDGNLSKHLKKLEEAGYVEVEKEFEGRRPRTWYSLTDK--GREAFERYVAALRE 78 (80)
T ss_dssp HHHHHHHHSEEEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEE-SSS--EEEEEE-HH--HHHHHHHHHHHHHH
T ss_pred HHHHHhhcCCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEeccCCCCeEEEEECHH--HHHHHHHHHHHHHH
Confidence 3444444678999999999999999999999999999999886666555 3333332 22245555555443
No 219
>PF12728 HTH_17: Helix-turn-helix domain
Probab=65.95 E-value=19 Score=24.67 Aligned_cols=37 Identities=19% Similarity=0.104 Sum_probs=27.9
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
++.+++|+.||++...+. +++..|.|.+. ...+...+
T Consensus 2 lt~~e~a~~l~is~~tv~----~~~~~g~i~~~--~~g~~~~~ 38 (51)
T PF12728_consen 2 LTVKEAAELLGISRSTVY----RWIRQGKIPPF--KIGRKWRI 38 (51)
T ss_pred CCHHHHHHHHCcCHHHHH----HHHHcCCCCeE--EeCCEEEE
Confidence 478899999999988876 66678999776 34454554
No 220
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=65.74 E-value=1.8e+02 Score=30.61 Aligned_cols=92 Identities=18% Similarity=0.206 Sum_probs=64.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.-++-++..|||.+|...+++-+.. .++|. ..|.-.+-.|+.+++++.|-.-...+... . |+.+.|-++
T Consensus 363 ~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da----~lYsNRAac~~kL~~~~~aL~Da~~~ieL----~-p~~~kgy~R 431 (539)
T KOG0548|consen 363 EKGNEAFKKGDYPEAVKHYTEAIKR--DPEDA----RLYSNRAACYLKLGEYPEALKDAKKCIEL----D-PNFIKAYLR 431 (539)
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhc--CCchh----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc----C-chHHHHHHH
Confidence 4477788899999999999885532 22332 23455667888999998884443333222 2 667777777
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
. |..+...++|..|..-|.++.+
T Consensus 432 K--g~al~~mk~ydkAleay~eale 454 (539)
T KOG0548|consen 432 K--GAALRAMKEYDKALEAYQEALE 454 (539)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHh
Confidence 4 7888888999999999988865
No 221
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=65.62 E-value=14 Score=24.56 Aligned_cols=26 Identities=23% Similarity=0.066 Sum_probs=22.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKE 156 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e 156 (422)
..||..|...|++++|.+.++.++..
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 47889999999999999999888754
No 222
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=65.51 E-value=1.6e+02 Score=29.85 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=67.7
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
|++....-+-+-+..|+|..|.+.+.+= .+....-+--++.-++..-..||..++..++.++.....+ +.
T Consensus 83 ra~~~~~egl~~l~eG~~~qAEkl~~rn------ae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~----~~ 152 (400)
T COG3071 83 RARKALNEGLLKLFEGDFQQAEKLLRRN------AEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD----DT 152 (400)
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHh------hhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC----ch
Confidence 4444445555566789999998877662 2334445556667788999999999999999888666432 22
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+. .......+....|||..|....-+..+
T Consensus 153 l~--v~ltrarlll~~~d~~aA~~~v~~ll~ 181 (400)
T COG3071 153 LA--VELTRARLLLNRRDYPAARENVDQLLE 181 (400)
T ss_pred HH--HHHHHHHHHHhCCCchhHHHHHHHHHH
Confidence 22 234467777889999988876665543
No 223
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=65.09 E-value=20 Score=21.87 Aligned_cols=28 Identities=14% Similarity=-0.051 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
++....++|..+||+.+|...+.++..+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3444555666666666666666666544
No 224
>PRK11920 rirA iron-responsive transcriptional regulator; Reviewed
Probab=64.97 E-value=13 Score=32.47 Aligned_cols=56 Identities=13% Similarity=-0.041 Sum_probs=42.6
Q ss_pred HHHHHhhc-ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 332 QNLCRLIE-PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 332 ~~l~~i~~-pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+.++-+.. +-..++...||+..++|...+++.+..|...|-|...=-...|+.-..
T Consensus 12 r~L~~LA~~~~~~~s~~eIA~~~~is~~~L~kIl~~L~~aGlv~S~rG~~GGy~La~ 68 (153)
T PRK11920 12 RMLMYCAANDGKLSRIPEIARAYGVSELFLFKILQPLVEAGLVETVRGRNGGVRLGR 68 (153)
T ss_pred HHHHHHHhCCCCcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeeecC
Confidence 34444443 334689999999999999999999999999999987666655654443
No 225
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=64.59 E-value=14 Score=22.22 Aligned_cols=30 Identities=10% Similarity=0.122 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
++..++.++.+.|+++.-.+.+..+...++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 678999999999999999999888876554
No 226
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=64.08 E-value=1.7e+02 Score=32.37 Aligned_cols=173 Identities=13% Similarity=0.166 Sum_probs=88.1
Q ss_pred cchHHHHHhhcCC--hHHHHHHHHhhcCCC------CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhccc
Q 014555 9 TTDSIAQAKEASN--PSDAISMLYRVLDDP------SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI 80 (422)
Q Consensus 9 ~~~~~ak~~~~~~--~~~Ai~~l~~i~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 80 (422)
++.+.|-.++.++ .-.||+.|.+-=+-. .+++ .+-..+..+.+|..-+++..-|+...+++..+..|-..+
T Consensus 603 ~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~-~l~~de~il~~ia~alik~elydkagdlfeki~d~dkal 681 (1636)
T KOG3616|consen 603 GQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDE-ELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDKAL 681 (1636)
T ss_pred CchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHH-HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHH
Confidence 3455566666553 457888877643321 1222 344556677777766666666665555555444322111
Q ss_pred c---h-hHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH---------hcchhHHhhHHHHHHHHHHHhcccHHHHH
Q 014555 81 P---K-AKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTR---------AEKRTFLRQRVEARLAALLMESREYTEAL 147 (422)
Q Consensus 81 ~---k-~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~---------~~~r~~lr~~l~~~La~~~~~~g~~~~A~ 147 (422)
- | .+-.|.|. +..+. -|.. -++++ -.|.. ..---|+-+|..++-..-.....+|.+|+
T Consensus 682 e~fkkgdaf~kaie--larfa-fp~e-vv~le-----e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai 752 (1636)
T KOG3616|consen 682 ECFKKGDAFGKAIE--LARFA-FPEE-VVKLE-----EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAI 752 (1636)
T ss_pred HHHHcccHHHHHHH--HHHhh-CcHH-HhhHH-----HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhH
Confidence 0 0 11112221 11111 1110 00000 01111 00013444444455555556667888998
Q ss_pred HHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 148 TLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 148 ~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
.++..++.. ..-.-.|-+.+.-|...|++..|..+++++.....
T Consensus 753 ~ildniqdq-------k~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~d 796 (1636)
T KOG3616|consen 753 SILDNIQDQ-------KTASGYYGEIADHYANKGDFEIAEELFTEADLFKD 796 (1636)
T ss_pred hHHHHhhhh-------ccccccchHHHHHhccchhHHHHHHHHHhcchhHH
Confidence 888887643 11223455567788899999999999987755443
No 227
>PRK04841 transcriptional regulator MalT; Provisional
Probab=64.02 E-value=2.5e+02 Score=31.54 Aligned_cols=174 Identities=11% Similarity=0.032 Sum_probs=97.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHH-HHHHHHHHHhh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTA-KIVRGIIDAVA 97 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~-k~v~~~l~~~~ 97 (422)
..++++|...+........... .....-+...++..+...|+++.....+................ -....+ ..+.
T Consensus 465 ~g~~~~A~~~~~~al~~~~~~~--~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~l-a~~~ 541 (903)
T PRK04841 465 DGDPEEAERLAELALAELPLTW--YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQ-SEIL 541 (903)
T ss_pred CCCHHHHHHHHHHHHhcCCCcc--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHH-HHHH
Confidence 3467888888877665322111 11123355677888888999998877776665433221111110 111111 1111
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcc--hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEK--RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESK 175 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~--r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~ 175 (422)
-..+..+.-...+.+.++.+...+ ..+....+...++.++...|++++|...+...+.-..... .......+....+
T Consensus 542 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~ 620 (903)
T PRK04841 542 FAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAK 620 (903)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHH
Confidence 112222333555666666554322 1122222234678888999999999988887655433222 2223445556778
Q ss_pred HHHhhCCHHHHHHHHHHHHHh
Q 014555 176 LHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 176 ~~~~~~n~~kak~~l~~a~~~ 196 (422)
++...|++..|...+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~ 641 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENL 641 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888999999998888877654
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.55 E-value=1.4e+02 Score=28.54 Aligned_cols=25 Identities=8% Similarity=0.195 Sum_probs=21.2
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHH
Q 014555 282 ELDAMKAVADAHSKRSLKLFETALR 306 (422)
Q Consensus 282 ~i~~~~~L~~af~~~dl~~f~~~l~ 306 (422)
+...+..|+.+|..+|...|...+.
T Consensus 227 d~r~lenLL~ayd~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 227 DSRSLENLLTAYDEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHc
Confidence 4567889999999999999987664
No 229
>PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors is involved in binding to the -35 promoter element via a helix-turn-helix motif []. Due to the way Pfam works, the threshold has been set artificially high to prevent overlaps with other helix-turn-helix families. Therefore there are many false negatives.; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2P7V_B 3IYD_F 1TLH_B 1KU7_A 1RIO_H 3N97_A 1KU3_A 1RP3_C 1SC5_A 1NR3_A ....
Probab=63.33 E-value=16 Score=25.04 Aligned_cols=29 Identities=17% Similarity=0.346 Sum_probs=24.8
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
|...|+.+||+.+|+|...|-....+++.
T Consensus 18 ~~~~t~~eIa~~lg~s~~~V~~~~~~al~ 46 (50)
T PF04545_consen 18 FEGLTLEEIAERLGISRSTVRRILKRALK 46 (50)
T ss_dssp TST-SHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHCCcHHHHHHHHHHHHH
Confidence 78899999999999999999888877663
No 230
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=63.28 E-value=79 Score=27.41 Aligned_cols=88 Identities=16% Similarity=0.155 Sum_probs=61.1
Q ss_pred cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh
Q 014555 142 EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE 221 (422)
Q Consensus 142 ~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~ 221 (422)
.|..+...+.++.. ..+.......+......+...+++..|...+.++..+.. +|...+.....-|.++...
T Consensus 14 ~~~~~~~~l~~~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~----~~~~~~~~~~~lg~~~~~~ 85 (168)
T CHL00033 14 TFTIVADILLRILP----TTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI----DPYDRSYILYNIGLIHTSN 85 (168)
T ss_pred ccccchhhhhHhcc----CCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc----cchhhHHHHHHHHHHHHHc
Confidence 35555555555432 233444667777778889999999999999998876632 2222334556678889999
Q ss_pred hcHHHHHHHHHHHhhh
Q 014555 222 KDYKTAYSYFFEAFEA 237 (422)
Q Consensus 222 ~dy~~A~~~f~ea~~~ 237 (422)
+++..|..+|-.+...
T Consensus 86 g~~~eA~~~~~~Al~~ 101 (168)
T CHL00033 86 GEHTKALEYYFQALER 101 (168)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999998888754
No 231
>COG1959 Predicted transcriptional regulator [Transcription]
Probab=63.19 E-value=12 Score=32.63 Aligned_cols=57 Identities=23% Similarity=0.095 Sum_probs=45.3
Q ss_pred HHHHHHhhcc--cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 331 EQNLCRLIEP--YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 331 ~~~l~~i~~p--Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
.|+|.-+..- ..-++.+.||+..|+|+..+++.+.+|-..|.+...=-...|+.-..
T Consensus 11 l~~L~~LA~~~~~~~~s~~~IA~~~~is~~~L~kil~~L~kaGlV~S~rG~~GGy~Lar 69 (150)
T COG1959 11 LRALLYLALLPGGGPVSSAEIAERQGISPSYLEKILSKLRKAGLVKSVRGKGGGYRLAR 69 (150)
T ss_pred HHHHHHHHhCCCCCcccHHHHHHHhCcCHHHHHHHHHHHHHcCCEEeecCCCCCccCCC
Confidence 3556666643 34799999999999999999999999999999987766666665443
No 232
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=62.93 E-value=1.8e+02 Score=29.53 Aligned_cols=83 Identities=17% Similarity=0.234 Sum_probs=42.0
Q ss_pred cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh
Q 014555 142 EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE 221 (422)
Q Consensus 142 ~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~ 221 (422)
+.++|...+.+|..++.....+....|-.+ ..+|-..+.++-||.-++.+-++....- -+...+..+.. ++..
T Consensus 58 ~l~~a~~~i~~L~~~i~~ik~kA~~sE~~V--~~it~dIk~LD~AKrNLT~SIT~LkrL~---MLv~a~~qL~~--~~~~ 130 (383)
T PF04100_consen 58 DLEEAQEAIQELFEKISEIKSKAEESEQMV--QEITRDIKQLDNAKRNLTQSITTLKRLQ---MLVTAVEQLKE--LAKK 130 (383)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH--HHHc
Confidence 355666666666655554444444444433 2355555666666666665544433211 12222333332 3456
Q ss_pred hcHHHHHHHH
Q 014555 222 KDYKTAYSYF 231 (422)
Q Consensus 222 ~dy~~A~~~f 231 (422)
++|.+++..+
T Consensus 131 r~Y~e~a~~L 140 (383)
T PF04100_consen 131 RQYKEIASLL 140 (383)
T ss_pred CCHHHHHHHH
Confidence 7888777644
No 233
>PRK10857 DNA-binding transcriptional regulator IscR; Provisional
Probab=62.53 E-value=15 Score=32.54 Aligned_cols=47 Identities=19% Similarity=0.245 Sum_probs=40.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
..++.+.||+.+|+|...+++.+.+|-..|.+...=....|+.-..+
T Consensus 24 ~~vs~~eIA~~~~ip~~~l~kIl~~L~~aGLv~s~rG~~GGy~Lar~ 70 (164)
T PRK10857 24 GPVPLADISERQGISLSYLEQLFSRLRKNGLVSSVRGPGGGYLLGKD 70 (164)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeCCCCCCCeeccCC
Confidence 57999999999999999999999999999999976566667554443
No 234
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=62.33 E-value=1.9e+02 Score=29.49 Aligned_cols=98 Identities=15% Similarity=0.190 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
+.+.||-.++..++|.+|+..-+.++. .+.++.+.- ...-+.++..+++..|+..+.++.++. |.+..+.+
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe----~~~~N~KAL--yRrG~A~l~~~e~~~A~~df~ka~k~~---P~Nka~~~ 329 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLE----LDPNNVKAL--YRRGQALLALGEYDLARDDFQKALKLE---PSNKAARA 329 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHh----cCCCchhHH--HHHHHHHHhhccHHHHHHHHHHHHHhC---CCcHHHHH
Confidence 356889999999999999887777663 244444443 346889999999999999999998774 22445666
Q ss_pred HHHHHHHHHhchhhcHHHHHH-HHHHHhhhhh
Q 014555 209 TIDLQSGILHAEEKDYKTAYS-YFFEAFEAFN 239 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~-~f~ea~~~~~ 239 (422)
.+..|.-++. +|...-+ .|-..|....
T Consensus 330 el~~l~~k~~----~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 330 ELIKLKQKIR----EYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHhhccc
Confidence 6665554433 4443333 3334455444
No 235
>PF13545 HTH_Crp_2: Crp-like helix-turn-helix domain; PDB: 3LA2_A 3LA3_B 3LA7_A 3B02_A 3E97_A 2H6C_B 1OMI_A 2BGC_H 2BEO_A 2GAU_A ....
Probab=61.99 E-value=9.7 Score=28.45 Aligned_cols=44 Identities=16% Similarity=0.262 Sum_probs=36.7
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-.++-+.||..+|++...+-+.+.+|..+|.|. -..|.+.+.++
T Consensus 27 ~~lt~~~iA~~~g~sr~tv~r~l~~l~~~g~I~----~~~~~i~I~d~ 70 (76)
T PF13545_consen 27 LPLTQEEIADMLGVSRETVSRILKRLKDEGIIE----VKRGKIIILDP 70 (76)
T ss_dssp EESSHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESSH
T ss_pred ecCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEE----EcCCEEEECCH
Confidence 357889999999999999999999999998776 45667777654
No 236
>KOG3151 consensus 26S proteasome regulatory complex, subunit RPN12/PSMD8 [Posttranslational modification, protein turnover, chaperones]
Probab=61.84 E-value=1.4e+02 Score=28.08 Aligned_cols=74 Identities=9% Similarity=0.135 Sum_probs=55.4
Q ss_pred CcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChH
Q 014555 280 GPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPID 358 (422)
Q Consensus 280 ~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~ 358 (422)
+|-|.+.-.|-+.+-.|.|.+.....+. ..+|.+.-..+-|.+.||.--=--+=+.|..|+++..+++|.++.+
T Consensus 134 ~~~I~~~v~LEq~~MEGaYnKv~~a~~s-----~p~~~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~ 207 (260)
T KOG3151|consen 134 NPYISHPVSLEQSLMEGAYNKVLSAKQS-----IPSEEYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNND 207 (260)
T ss_pred cchhhhHHHHHHHHHhhHHHHHHHHHhc-----CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCCh
Confidence 3557777788888888877766554432 2367777777778888887666666679999999999999999843
No 237
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=61.38 E-value=22 Score=21.62 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
..++.+|.+.|++++|.+.+++.+.
T Consensus 5 ~~lg~~y~~~~~~~~A~~~~~~a~~ 29 (34)
T PF13181_consen 5 YNLGKIYEQLGDYEEALEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4789999999999999998887653
No 238
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=61.26 E-value=16 Score=23.09 Aligned_cols=28 Identities=18% Similarity=0.273 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchh
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPF 76 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~ 76 (422)
++..|+.+|.+.|+|+...+++......
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678999999999999999999875543
No 239
>TIGR02702 SufR_cyano iron-sulfur cluster biosynthesis transcriptional regulator SufR. All members of this cyanobacterial protein family are the transcriptional regulator SufR and regulate the SUF system, which makes possible iron-sulfur cluster biosynthesis despite exposure to oxygen. In all cases, the sufR gene is encoded near SUF system genes but in the opposite direction. This DNA-binding protein belongs to the the DeoR family of helix-loop-helix proteins. All members also have a probable metal-binding motif C-X(12)-C-X(13)-C-X(14)-C near the C-terminus.
Probab=61.05 E-value=43 Score=30.53 Aligned_cols=57 Identities=9% Similarity=0.086 Sum_probs=43.5
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeee-----ecCCCEEEEec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL-----DQGVGCLIIFE 388 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkI-----Dq~~g~v~~~~ 388 (422)
..|+.++.....++...||+.+|++..-|-+.|.+|...|.|.-.- +++...+.+++
T Consensus 4 ~~IL~~L~~~~~~t~~eLA~~lgis~~tV~~~L~~Le~~GlV~r~~~~~~~gRp~~~y~LT~ 65 (203)
T TIGR02702 4 EDILSYLLKQGQATAAALAEALAISPQAVRRHLKDLETEGLIEYEAVVQGMGRPQYHYQLSR 65 (203)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEeecccCCCCCceEEEECc
Confidence 3455555555679999999999999999999999999999997652 34444455554
No 240
>PF14947 HTH_45: Winged helix-turn-helix; PDB: 1XSX_B 1R7J_A.
Probab=61.03 E-value=34 Score=26.04 Aligned_cols=51 Identities=12% Similarity=0.120 Sum_probs=36.3
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
|+..+. ....++.+|+...|++...+.+.|..++..|.| ...++...+++.
T Consensus 11 IL~~l~-~~~~~~t~i~~~~~L~~~~~~~yL~~L~~~gLI----~~~~~~Y~lTek 61 (77)
T PF14947_consen 11 ILKILS-KGGAKKTEIMYKANLNYSTLKKYLKELEEKGLI----KKKDGKYRLTEK 61 (77)
T ss_dssp HHHHH--TT-B-HHHHHTTST--HHHHHHHHHHHHHTTSE----EEETTEEEE-HH
T ss_pred HHHHHH-cCCCCHHHHHHHhCcCHHHHHHHHHHHHHCcCe----eCCCCEEEECcc
Confidence 333443 577889999999999999999999999999999 336777777653
No 241
>PF13463 HTH_27: Winged helix DNA-binding domain; PDB: 3GFL_A 2YR2_B 3GFM_A 3GFJ_A 3GF2_A 3GEZ_A 2GXG_A 3GFI_A 2EB7_A.
Probab=60.86 E-value=34 Score=24.68 Aligned_cols=44 Identities=9% Similarity=0.059 Sum_probs=33.5
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.....++..+||+.++++...+-+.|-+|+..|-|.=.-|..++
T Consensus 14 ~~~~~~t~~~l~~~~~~~~~~vs~~i~~L~~~glv~~~~~~~d~ 57 (68)
T PF13463_consen 14 HSDGPMTQSDLAERLGISKSTVSRIIKKLEEKGLVEKERDPHDK 57 (68)
T ss_dssp --TS-BEHHHHHHHTT--HHHHHHHHHHHHHTTSEEEEEESSCT
T ss_pred ccCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCCcC
Confidence 37889999999999999999999999999999999655454433
No 242
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=60.75 E-value=2.5e+02 Score=30.57 Aligned_cols=159 Identities=18% Similarity=0.304 Sum_probs=81.5
Q ss_pred HHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHH
Q 014555 51 TELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVE 130 (422)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~ 130 (422)
.+.+++..+.|.-...+++++.++-|-- ++. ++. .++.+.+-.|+..=-+|+++.+ + -
T Consensus 649 ~EAAklFk~~G~enRAlEmyTDlRMFD~----------aQE---~~~--~g~~~eKKmL~RKRA~WAr~~k-----e--P 706 (1081)
T KOG1538|consen 649 HEAAKLFKRSGHENRALEMYTDLRMFDY----------AQE---FLG--SGDPKEKKMLIRKRADWARNIK-----E--P 706 (1081)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHH----------HHH---Hhh--cCChHHHHHHHHHHHHHhhhcC-----C--c
Confidence 4455666666666666666666653211 122 221 1223455566666667886432 1 3
Q ss_pred HHHHHHHHhcccHHHHHHHHH---------HHHHHHhhhc-cchhHHHHHH-------HHHHHHHhhCCHHHHHHH----
Q 014555 131 ARLAALLMESREYTEALTLLT---------SLVKEVRRLD-DKLLLVDIDL-------LESKLHFSLRNLPKAKAA---- 189 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~---------~l~~e~~~~~-~~~~~~e~~l-------~~~~~~~~~~n~~kak~~---- 189 (422)
..-|+++...|+.++|+.+.. +|-..+.+++ +...++.-++ +-++++...||....-.+
T Consensus 707 kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~ 786 (1081)
T KOG1538|consen 707 KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVET 786 (1081)
T ss_pred HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeec
Confidence 356788888999888886552 2222222221 1111221111 123344444443332221
Q ss_pred --HHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 190 --LTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 190 --l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
++.|-.++.+ +|+..-..+...|...+....|.+|-+-|..|
T Consensus 787 ~~W~eAFalAe~---hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 787 QRWDEAFALAEK---HPEFKDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred ccchHhHhhhhh---CccccccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 1222333332 55666666677788888888888888877654
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=60.48 E-value=32 Score=29.08 Aligned_cols=67 Identities=22% Similarity=0.272 Sum_probs=45.2
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh----cccchhHHHHHHHHH
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF----SLIPKAKTAKIVRGI 92 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~----~~~~k~~~~k~v~~~ 92 (422)
..++++|++.+...+..++-+ +.+...++..+...|+.....+.+..+...+ +.-|...+..+.+.|
T Consensus 75 ~~~~~~a~~~~~~~l~~dP~~-------E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l~~~i 145 (146)
T PF03704_consen 75 AGDYEEALRLLQRALALDPYD-------EEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRALYREI 145 (146)
T ss_dssp TT-HHHHHHHHHHHHHHSTT--------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHHHHHh
Confidence 446899999999988876643 5578889999999999999888887776544 333445555555544
No 244
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=60.30 E-value=15 Score=23.29 Aligned_cols=26 Identities=31% Similarity=0.355 Sum_probs=20.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKE 156 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e 156 (422)
..||..|...|++++|..++.+.+.-
T Consensus 6 ~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 6 NNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 47899999999999999888887543
No 245
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional
Probab=59.89 E-value=14 Score=35.20 Aligned_cols=44 Identities=7% Similarity=0.150 Sum_probs=40.7
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
|...|+.+++.+.++++.+||+.||+|+.-+-+.|..|-..|.|
T Consensus 6 R~~~Il~~L~~~~~v~v~eLa~~l~VS~~TIRRDL~~Le~~g~l 49 (256)
T PRK10434 6 RQAAILEYLQKQGKTSVEELAQYFDTTGTTIRKDLVILEHAGTV 49 (256)
T ss_pred HHHHHHHHHHHcCCEEHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 67788899999999999999999999999999999999998866
No 246
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=59.70 E-value=1.6e+02 Score=28.02 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=72.0
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHH---HhhCCHHHHHHHHHHHHHhhccCCC---C
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLH---FSLRNLPKAKAALTAARTAANAIYV---P 203 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~---~~~~n~~kak~~l~~a~~~~~~i~~---~ 203 (422)
.+.|+.-+...|+|++|...+.+-+.--..+.+- ..+-.....+.+. ...+|...++.++.....+....|- .
T Consensus 74 ~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya 152 (254)
T COG4105 74 QLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA 152 (254)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch
Confidence 6688888999999999998887765443332221 1221111111111 1345778888888777665544331 1
Q ss_pred chhh----------HHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 204 PAQQ----------GTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 204 ~~i~----------a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
|..+ +...+.-|.+|...+.|..|..+|-+..++|...
T Consensus 153 ~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t 200 (254)
T COG4105 153 PDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT 200 (254)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc
Confidence 2222 4444678999999999999999999999998754
No 247
>PRK10411 DNA-binding transcriptional activator FucR; Provisional
Probab=59.49 E-value=15 Score=34.71 Aligned_cols=45 Identities=13% Similarity=0.268 Sum_probs=40.0
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|...|+.+++....++.++||+.||+|..-+.+.|..|-..|.+.
T Consensus 5 R~~~Il~~l~~~~~~~~~eLa~~l~VS~~TiRRdL~~L~~~~~l~ 49 (240)
T PRK10411 5 RQQAIVDLLLNHTSLTTEALAEQLNVSKETIRRDLNELQTQGKIL 49 (240)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 556688888888999999999999999999999999998877764
No 248
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=59.10 E-value=19 Score=26.50 Aligned_cols=40 Identities=13% Similarity=0.061 Sum_probs=35.2
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
.....+..+||+.+|+|...|-+.|.+|...|.+.-.-..
T Consensus 19 ~~~~~t~~eIa~~l~i~~~~v~~~L~~L~~~GlV~~~~~~ 58 (68)
T PF01978_consen 19 KNGPATAEEIAEELGISRSTVYRALKSLEEKGLVEREEGR 58 (68)
T ss_dssp HHCHEEHHHHHHHHTSSHHHHHHHHHHHHHTTSEEEEEEC
T ss_pred HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEcCc
Confidence 5678999999999999999999999999999998654433
No 249
>PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family. The family is named after Corynebacterium diphtheriae DtxR, an iron-specific diphtheria toxin repressor, and Bacillus subtilis MntR, a manganese transport regulator. Iron-responsive metalloregulators such as DtxR and IdeR occur in Gram-positive bacteria of the high GC branch, while manganese-responsive metalloregulators like MntR are described in diverse genera of Gram-positive and Gram-negative bacteria and also in Archaea [].The metalloregulators like DtxR/MntR contain the DNA-binding DtxR-type HTH domain usually in the N-terminal part. The C-terminal part contains a dimerisation domain with two metal-binding sites, although the primary metal-binding site is less conserved in the Mn(II)-regulators. Fe(II)-regulated proteins contain an SH3-like domain as a C-terminal extension, which is absent in Mn(II)-regulated MntR [, ]. Metal-ion dependent regulators orchestrate the virulence of several important human pathogens. The DtxR protein regulates the expression of diphtheria toxinin response to environmental iron concentrations. Furthermore, DtxR and IdeR control iron uptake []. Homeostasis of manganese, which is an essential nutrient, is regulated by MntR. A typical DtxR-type metalloregulator binds two divalent metal effectors per monomer, upon which allosteric changes occur that moderate binding to the cognate DNA operators. Iron-bound DtxR homodimers bind to an interrupted palindrome of 19 bp, protecting a sequence of ~30 bp. The crystal structures of iron-regulated and manganese-regulated repressors show that the DNA binding domain contains three alpha-helices and a pair of antiparallel beta-strands. Helices 2 and 3 comprise the helix-turn-helix motif and the beta-strands are called the wing []. This wHTH topology is similar to the lysR-type HTH (see PDOC00043 from PROSITEDOC). Most DtxR-type metalloregulators bind as dimers to the DNA major groove. Several proteins are known to contain a DtxR-type HTH domain. These include- Corynebacterium diphtheriae DtxR, a diphtheria toxin repressor [], which regulates the expression of the high-affinity iron uptake system, other iron-sensitive genes, and the bacteriophage tox gene. Metal-bound DtxR represses transcription by binding the tox operator; if iron is limiting, conformational changes of the wHTH disrupt DNA-binding and the diphtheria toxin is produced. Mycobacterium tuberculosis IdeR, an iron-dependent regulator that is essential for this pathogen. The regulator represses genes for iron acquisition and activates iron storage genes, and is a positive regulator of oxidative stress responses []. Bacillus subtilis MntR, a manganese transport regulator, binds Mn2+ as an effector and is a transcriptional repressor of transporters for the import of manganese. Treponema pallidum troR, a metal-dependent transcriptional repressor. Archaeoglobus fulgidus MDR1 (troR), a metal-dependent transcriptional repressor, which negatively regulates its own transcription. This entry covers the entire DtxR-type HTH domain.; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 2X4H_D 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A ....
Probab=59.00 E-value=25 Score=25.45 Aligned_cols=39 Identities=21% Similarity=0.157 Sum_probs=32.7
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.+.+.=..|+..+||+.||+++.-|-..+-+|-..|.+.
T Consensus 15 ~l~~~~~~v~~~~iA~~L~vs~~tvt~ml~~L~~~GlV~ 53 (60)
T PF01325_consen 15 ELSEEGGPVRTKDIAERLGVSPPTVTEMLKRLAEKGLVE 53 (60)
T ss_dssp HHHHCTSSBBHHHHHHHHTS-HHHHHHHHHHHHHTTSEE
T ss_pred HHHcCCCCccHHHHHHHHCCChHHHHHHHHHHHHCCCEE
Confidence 333456789999999999999999999999999999875
No 250
>TIGR02337 HpaR homoprotocatechuate degradation operon regulator, HpaR. This Helix-Turn-Helix transcriptional regulator is a member of the MarR family (pfam01047) and is found in association with operons for the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate.
Probab=58.47 E-value=78 Score=25.84 Aligned_cols=47 Identities=11% Similarity=0.083 Sum_probs=40.2
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
..+.....++.++||+.+|++..-+-..+-+|...|-|...-|..++
T Consensus 35 ~~l~~~~~~t~~ela~~~~~~~~tvs~~l~~Le~~GlI~r~~~~~D~ 81 (118)
T TIGR02337 35 RILAEQGSMEFTQLANQACILRPSLTGILARLERDGLVTRLKASNDQ 81 (118)
T ss_pred HHHHHcCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeccCCCCC
Confidence 33334567899999999999999999999999999999998877665
No 251
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=57.86 E-value=83 Score=26.80 Aligned_cols=60 Identities=18% Similarity=0.102 Sum_probs=45.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
.++.++...|++++|...+...+.- ++. -.+.+..-..++...|++..|...+..+....
T Consensus 63 ~lg~~~~~~g~~~~A~~~y~~Al~l----~p~--~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 63 ALAGTWMMLKEYTTAINFYGHALML----DAS--HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc----CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7888899999999999999988742 222 22333334567888999999999999887764
No 252
>TIGR00738 rrf2_super rrf2 family protein (putative transcriptional regulator). This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency.
Probab=57.85 E-value=31 Score=28.84 Aligned_cols=43 Identities=21% Similarity=0.163 Sum_probs=35.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
..++.++||+.+|+|...+.+.+..|...|-|...-....|+.
T Consensus 24 ~~~s~~eia~~~~i~~~~v~~il~~L~~~gli~~~~g~~ggy~ 66 (132)
T TIGR00738 24 GPVSVKEIAERQGISRSYLEKILRTLRRAGLVESVRGPGGGYR 66 (132)
T ss_pred CcCcHHHHHHHHCcCHHHHHHHHHHHHHCCcEEeccCCCCCcc
Confidence 3799999999999999999999999999999876434444533
No 253
>TIGR02944 suf_reg_Xantho FeS assembly SUF system regulator, gammaproteobacterial. The SUF system is an oxygen-resistant iron-sulfur cluster assembly system found in both aerobes and facultative anaerobes. Its presence appears to be a marker of oxygen tolerance; strict anaerobes and microaerophiles tend to have different FeS cluster biosynthesis systems. Members of this protein family belong to the rrf2 family of transcriptional regulators and are found, typically, as the first gene of a SUF operon. It is found only in a subset of genomes that encode the SUF system, including the genus Xanthomonas. The conserved location suggests an autoregulatory role.
Probab=57.59 E-value=12 Score=31.50 Aligned_cols=43 Identities=26% Similarity=0.157 Sum_probs=36.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
..++..+||+.+|+|...+.+.+..|...|.|.+.-....|..
T Consensus 24 ~~~s~~eia~~l~is~~~v~~~l~~L~~~Gli~~~~g~~ggy~ 66 (130)
T TIGR02944 24 QPYSAAEIAEQTGLNAPTVSKILKQLSLAGIVTSKRGVEGGYT 66 (130)
T ss_pred CCccHHHHHHHHCcCHHHHHHHHHHHHHCCcEEecCCCCCChh
Confidence 5799999999999999999999999999999977543334433
No 254
>PHA02943 hypothetical protein; Provisional
Probab=56.65 E-value=89 Score=27.37 Aligned_cols=75 Identities=12% Similarity=0.138 Sum_probs=51.4
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHHH
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDS 412 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~~ 412 (422)
-++.++ ..-.-+.++||+.+|+|-.+++..|--+=.+|.+.- +-++.-.+-.-.++.- -+...+....+-+++.+
T Consensus 15 eILE~L-k~G~~TtseIAkaLGlS~~qa~~~LyvLErEG~Vkr-V~~G~~tyw~l~~day---~~~v~~~~Relwrlv~s 89 (165)
T PHA02943 15 KTLRLL-ADGCKTTSRIANKLGVSHSMARNALYQLAKEGMVLK-VEIGRAAIWCLDEDAY---TNLVFEIKRELWRLVCN 89 (165)
T ss_pred HHHHHH-hcCCccHHHHHHHHCCCHHHHHHHHHHHHHcCceEE-EeecceEEEEEChHHH---HHHHHHHHHHHHHHHHh
Confidence 345555 556778899999999999999999999999999975 4455555554444322 13344555666555543
No 255
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=56.42 E-value=28 Score=33.53 Aligned_cols=42 Identities=26% Similarity=0.426 Sum_probs=37.2
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecC
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQG 380 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~ 380 (422)
.--..|++.++|+.+++|.+.+-..+......+.|+|++|..
T Consensus 126 qe~G~vsi~eLa~~~~Lp~efl~~~li~~~lg~~I~g~~d~~ 167 (272)
T PF09743_consen 126 QESGQVSISELAKQYDLPSEFLKEELISKRLGKIIKGRLDGD 167 (272)
T ss_pred HHcCeEeHHHHHHhcCCcHHHHHHHHhhhhcCcceeEEEeCC
Confidence 334899999999999999999997777778889999999998
No 256
>PF04967 HTH_10: HTH DNA binding domain; InterPro: IPR007050 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. This entry represents the HTH DNA binding domain found in Halobacterium salinarium (Halobacterium halobium) and described as a putative bacterio-opsin activator.
Probab=55.35 E-value=16 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.338 Sum_probs=24.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
+.+++++||+.||++..-+...|.+..
T Consensus 22 R~~tl~elA~~lgis~st~~~~LRrae 48 (53)
T PF04967_consen 22 RRITLEELAEELGISKSTVSEHLRRAE 48 (53)
T ss_pred CcCCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 799999999999999988888887654
No 257
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=55.13 E-value=25 Score=21.26 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=22.4
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
+...-|..+...++|.+|..+|-.+..-
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 4456788999999999999999988753
No 258
>smart00346 HTH_ICLR helix_turn_helix isocitrate lyase regulation.
Probab=54.91 E-value=26 Score=27.01 Aligned_cols=43 Identities=14% Similarity=0.133 Sum_probs=35.6
Q ss_pred HHHHhhccc-ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 333 NLCRLIEPY-SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 333 ~l~~i~~pY-s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
.++.++... ..+++..||+.+|+|..-+-+.+..|...|-|..
T Consensus 9 ~Il~~l~~~~~~~t~~~ia~~l~i~~~tv~r~l~~L~~~g~l~~ 52 (91)
T smart00346 9 AVLRALAEEPGGLTLAELAERLGLSKSTAHRLLNTLQELGYVEQ 52 (91)
T ss_pred HHHHHHHhCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeee
Confidence 344444444 4799999999999999999999999999998865
No 259
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=54.83 E-value=1.9e+02 Score=27.30 Aligned_cols=192 Identities=15% Similarity=0.039 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 43 LRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
....-++-.+++--|.++||+......+..-.. .=|..+-+-.++..+=.-...++ .--+-+...+....++|
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~---~DPs~~~a~~~~A~~Yq~~Ge~~---~A~e~YrkAlsl~p~~G- 103 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALE---HDPSYYLAHLVRAHYYQKLGEND---LADESYRKALSLAPNNG- 103 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---hCcccHHHHHHHHHHHHHcCChh---hHHHHHHHHHhcCCCcc-
Confidence 344556778888889999988887766655443 22444444444433221111111 11122222222222233
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCC
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYV 202 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~ 202 (422)
++.-.-+-+++..|.|++|...+..-+..-.-. .--+.+.--.-+.+..|++..|+.+++++.......+
T Consensus 104 -----dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~----~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~- 173 (250)
T COG3063 104 -----DVLNNYGAFLCAQGRPEEAMQQFERALADPAYG----EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP- 173 (250)
T ss_pred -----chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC----CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC-
Confidence 234478889999999999988776654321000 0111111112244578999999999999877654443
Q ss_pred CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhc
Q 014555 203 PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVS 261 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~ 261 (422)
++. .-....|..+|+|..|- .|++-+. .-+...+-..+-=+=+++.+++
T Consensus 174 ~~~------l~~a~~~~~~~~y~~Ar-~~~~~~~---~~~~~~A~sL~L~iriak~~gd 222 (250)
T COG3063 174 PAL------LELARLHYKAGDYAPAR-LYLERYQ---QRGGAQAESLLLGIRIAKRLGD 222 (250)
T ss_pred hHH------HHHHHHHHhcccchHHH-HHHHHHH---hcccccHHHHHHHHHHHHHhcc
Confidence 222 23567788999999887 5555543 2233333332222335555554
No 260
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=54.49 E-value=2.1e+02 Score=29.45 Aligned_cols=44 Identities=14% Similarity=0.217 Sum_probs=27.1
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHH
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQD 65 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 65 (422)
+.++|+-.-..-+.-.+.=+ +.-...|+++.|+.+|...|..-+
T Consensus 110 ~fdeA~~cc~rhLd~areLg-Drv~e~RAlYNlgnvYhakGk~~g 153 (639)
T KOG1130|consen 110 AFDEALTCCFRHLDFARELG-DRVLESRALYNLGNVYHAKGKCTG 153 (639)
T ss_pred ccchHHHHHHHHhHHHHHHh-HHHhhhHHHhhhhhhhhhcccccC
Confidence 45677766555444333212 234557899999999988885443
No 261
>PRK13509 transcriptional repressor UlaR; Provisional
Probab=54.30 E-value=20 Score=34.00 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=40.1
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|...|+.++.....++..+||+.||+|..-+.+.|.+|-..|.|.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TirRdL~~Le~~g~i~ 50 (251)
T PRK13509 6 RHQILLELLAQLGFVTVEKVIERLGISPATARRDINKLDESGKLK 50 (251)
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 456678888889999999999999999999999999998888774
No 262
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=53.85 E-value=2.4e+02 Score=29.06 Aligned_cols=171 Identities=16% Similarity=0.167 Sum_probs=94.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC------CCch
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY------VPPA 205 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~------~~~~ 205 (422)
-.++.+.-.|++.+|...--.++ +.+. ..++-....-+++....|..++..-++++.++.-.-+ .-|+
T Consensus 174 lka~cl~~~~~~~~a~~ea~~il----kld~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k 247 (486)
T KOG0550|consen 174 LKAECLAFLGDYDEAQSEAIDIL----KLDA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPK 247 (486)
T ss_pred hhhhhhhhcccchhHHHHHHHHH----hccc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHH
Confidence 66777888899999876544443 2232 2334344445566667788888777777655432110 0111
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcc-hH
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-LD 284 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~-i~ 284 (422)
.. ....-.|-....+|+|..|+..|-|+...= .+.....+..|+-.|.+...-+..-..|-+..++... ++. |.
T Consensus 248 ~l-e~~k~~gN~~fk~G~y~~A~E~Yteal~id---P~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i-D~syik 322 (486)
T KOG0550|consen 248 KL-EVKKERGNDAFKNGNYRKAYECYTEALNID---PSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI-DSSYIK 322 (486)
T ss_pred HH-HHHHhhhhhHhhccchhHHHHHHHHhhcCC---ccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc-CHHHHH
Confidence 11 112336667778999999999999987521 1123444555777777654332211112122222222 232 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhHHhhhcC
Q 014555 285 AMKAVADAHSKRSLKLFETALRDFKAQLEED 315 (422)
Q Consensus 285 ~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D 315 (422)
++.. .+--...+.+|+...+.+.+.+..+
T Consensus 323 all~--ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 323 ALLR--RANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4433 3334457889999998887765433
No 263
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=53.35 E-value=38 Score=20.36 Aligned_cols=26 Identities=15% Similarity=0.092 Sum_probs=14.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 171 LLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 171 l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.....++...|++.+|...++++..+
T Consensus 5 ~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 5 YYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 33455566666666666666655443
No 264
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional
Probab=52.41 E-value=22 Score=33.77 Aligned_cols=45 Identities=11% Similarity=0.237 Sum_probs=40.9
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|...|+.+++....++..+||+.|++|..-+-+.|..|-..|.+.
T Consensus 6 R~~~Il~~l~~~~~~~~~ela~~l~vS~~TiRRdL~~Le~~g~l~ 50 (252)
T PRK10906 6 RHDAIIELVKQQGYVSTEELVEHFSVSPQTIRRDLNDLAEQNKIL 50 (252)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHhCCCHHHHHHHHHHHHHCCCEE
Confidence 567788888889999999999999999999999999999988874
No 265
>PRK04424 fatty acid biosynthesis transcriptional regulator; Provisional
Probab=52.17 E-value=16 Score=32.96 Aligned_cols=45 Identities=16% Similarity=0.144 Sum_probs=40.8
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|.+.|+.++.....+++.+||+.||+|..-+-+-|..|-.+|.+.
T Consensus 8 R~~~Il~~l~~~~~~~~~~La~~~~vS~~TiRRDl~~L~~~g~~~ 52 (185)
T PRK04424 8 RQKALQELIEENPFITDEELAEKFGVSIQTIRLDRMELGIPELRE 52 (185)
T ss_pred HHHHHHHHHHHCCCEEHHHHHHHHCcCHHHHHHHHHHHhcchHHH
Confidence 677888888889999999999999999999999999998888774
No 266
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=51.10 E-value=29 Score=20.23 Aligned_cols=22 Identities=32% Similarity=0.298 Sum_probs=17.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHH
Q 014555 130 EARLAALLMESREYTEALTLLT 151 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~ 151 (422)
...|+..+...|++++|...+.
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4578899999999999987654
No 267
>PF08221 HTH_9: RNA polymerase III subunit RPC82 helix-turn-helix domain; InterPro: IPR013197 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. This family consists of several DNA-directed RNA polymerase III polypeptides which are related to the Saccharomyces cerevisiae (Baker's yeast) RPC82 protein. RNA polymerase C (III) promotes the transcription of tRNA and 5S RNA genes. In S. cerevisiae, the enzyme is composed of 15 subunits, ranging from 10 kDa to about 160 kDa []. This region is probably a DNA-binding helix-turn-helix.; PDB: 2XV4_S 2XUB_A.
Probab=50.99 E-value=60 Score=23.64 Aligned_cols=38 Identities=18% Similarity=0.241 Sum_probs=30.0
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.+-.+-+.++.+|.+..++|.++|.+-|+-||.-|-+.
T Consensus 21 ~Ll~~G~ltl~~i~~~t~l~~~~Vk~~L~~LiQh~~v~ 58 (62)
T PF08221_consen 21 VLLSRGRLTLREIVRRTGLSPKQVKKALVVLIQHNLVQ 58 (62)
T ss_dssp HHHHC-SEEHHHHHHHHT--HHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCee
Confidence 34457899999999999999999999999999877553
No 268
>TIGR01889 Staph_reg_Sar staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam model pfam01047.
Probab=50.17 E-value=1e+02 Score=24.97 Aligned_cols=42 Identities=7% Similarity=0.063 Sum_probs=38.0
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
-..++.++||+.++++..-+=..+.+|...|-|.=.-|..|+
T Consensus 41 ~~~~t~~eL~~~l~~~~stvs~~i~~Le~kg~I~r~~~~~D~ 82 (109)
T TIGR01889 41 EGKLTLKEIIKEILIKQSALVKIIKKLSKKGYLSKERSEDDE 82 (109)
T ss_pred CCcCcHHHHHHHHCCCHHHHHHHHHHHHHCCCEeccCCcccC
Confidence 357999999999999999999999999999999877777766
No 269
>PF01726 LexA_DNA_bind: LexA DNA binding domain; InterPro: IPR006199 This is the DNA binding domain of the LexA SOS regulon repressor which prevents expression of DNA repair proteins in bacteria. The aligned region contains a variant form of the helix-turn-helix DNA binding motif []. This domain usually at the N terminus is found associated with IPR006198 from INTERPRO the auto-proteolytic domain of LexA 3.4.21.88 from EC.; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 1LEA_A 1JHH_A 3JSP_A 1JHF_A 3JSO_B 1LEB_A 3K2Z_A.
Probab=48.70 E-value=38 Score=24.99 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=26.9
Q ss_pred cccchhHHHHhCCC-hHHHHHHHHhhhhcCCce
Q 014555 343 RVEIAHIAELIELP-IDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 343 ~I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~ 374 (422)
.-|+.+||+.||+. +.-|-..|..|...|.|.
T Consensus 25 ~Pt~rEIa~~~g~~S~~tv~~~L~~Le~kG~I~ 57 (65)
T PF01726_consen 25 PPTVREIAEALGLKSTSTVQRHLKALERKGYIR 57 (65)
T ss_dssp ---HHHHHHHHTSSSHHHHHHHHHHHHHTTSEE
T ss_pred CCCHHHHHHHhCCCChHHHHHHHHHHHHCcCcc
Confidence 35999999999996 999999999999988775
No 270
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=48.38 E-value=2.4e+02 Score=26.48 Aligned_cols=31 Identities=23% Similarity=0.317 Sum_probs=25.0
Q ss_pred HHHHHHHHHHcccHHHHHHHHHHhchhhccc
Q 014555 50 ITELSDLLRQENRAQDLCNLLTQLRPFFSLI 80 (422)
Q Consensus 50 ~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~ 80 (422)
+..++++.-+.|+++++.+.+..+....+.+
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eL 34 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPEL 34 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS--
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCC
Confidence 5678999999999999999999888765544
No 271
>TIGR01610 phage_O_Nterm phage replication protein O, N-terminal domain. This model represents the N-terminal region of the phage lambda replication protein O and homologous regions of other phage proteins.
Probab=48.08 E-value=56 Score=25.91 Aligned_cols=47 Identities=21% Similarity=0.205 Sum_probs=39.3
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
....++-.+||+.+|++.+-|-+.|.+|...|.|. .+...|.+-++.
T Consensus 44 ~~~~is~~eLa~~~g~sr~tVsr~L~~Le~~GlI~--r~~~~~~~~~n~ 90 (95)
T TIGR01610 44 KQDRVTATVIAELTGLSRTHVSDAIKSLARRRIIF--RQGMMGIVGVNT 90 (95)
T ss_pred cCCccCHHHHHHHHCcCHHHHHHHHHHHHHCCCee--eecCCceeecCC
Confidence 45688899999999999999999999999999996 345567776653
No 272
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=47.79 E-value=3e+02 Score=27.53 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=60.0
Q ss_pred HHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHH
Q 014555 51 TELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVE 130 (422)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~ 130 (422)
.||++.|...|.+.....++++-.+ +.+-..+=-.+.++-..+++ +..-+.++.+-++..-. +.++ -
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~---q~~~~dTfllLskvY~ridQ----P~~AL~~~~~gld~fP~-~VT~-----l 293 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSKVYQRIDQ----PERALLVIGEGLDSFPF-DVTY-----L 293 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhh---cCCchhHHHHHHHHHHHhcc----HHHHHHHHhhhhhcCCc-hhhh-----h
Confidence 4899999999988888777776654 33344444455555555542 23335555555553311 2222 2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
+..|++++..+++++|++++..+++
T Consensus 294 ~g~ARi~eam~~~~~a~~lYk~vlk 318 (478)
T KOG1129|consen 294 LGQARIHEAMEQQEDALQLYKLVLK 318 (478)
T ss_pred hhhHHHHHHHHhHHHHHHHHHHHHh
Confidence 3778999999999999998888764
No 273
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=47.67 E-value=3.3e+02 Score=28.01 Aligned_cols=98 Identities=12% Similarity=0.090 Sum_probs=67.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDD--KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~--~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
.-++-.+..|.|.+|.+.+.+-+ .+|+ +.-..-+|.-+..+.+.+|+...|-.--+.|..+. +..+.+-
T Consensus 254 ~~gN~~fk~G~y~~A~E~Yteal----~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD-----~syikal 324 (486)
T KOG0550|consen 254 ERGNDAFKNGNYRKAYECYTEAL----NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID-----SSYIKAL 324 (486)
T ss_pred hhhhhHhhccchhHHHHHHHHhh----cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-----HHHHHHH
Confidence 44566778899999988877754 3343 34456677778888888888877755544444432 2234443
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
+ ..|.-|+.-++|..|.++|-.+...-..
T Consensus 325 l--~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 325 L--RRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 3 3677888899999999999888764443
No 274
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=47.33 E-value=2.1e+02 Score=25.74 Aligned_cols=50 Identities=16% Similarity=0.069 Sum_probs=45.0
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCcee--eeecCCCEEEEecCCch
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAG--TLDQGVGCLIIFEDPKA 392 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--kIDq~~g~v~~~~~~~~ 392 (422)
-++=++||+.+|+...+|-+.|..+-.+|.+.. ..|...|..+.+|..+.
T Consensus 32 e~tDeela~~l~i~~~~vrriL~~L~e~~li~~~k~rd~~~~~~~y~w~~~~ 83 (176)
T COG1675 32 ELTDEELAELLGIKKNEVRRILYALYEDGLISYRKKRDEESGWEEYTWYINY 83 (176)
T ss_pred CcChHHHHHHhCccHHHHHHHHHHHHhCCceEEEeecccCCCcEEEEEEech
Confidence 578899999999999999999999999999975 78999999999997664
No 275
>PF04760 IF2_N: Translation initiation factor IF-2, N-terminal region; InterPro: IPR006847 This region is found in the N-terminal half of translation initiation factor IF-2. It is found in two copies in IF-2 alpha isoforms, and in only one copy in the N-terminally truncated beta and gamma isoforms []. Its function is unknown.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1ND9_A.
Probab=47.32 E-value=23 Score=24.84 Aligned_cols=25 Identities=20% Similarity=0.462 Sum_probs=19.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQ 366 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~ 366 (422)
..+++.++|+.+|+|+.++-+.+.+
T Consensus 2 ~~i~V~elAk~l~v~~~~ii~~l~~ 26 (54)
T PF04760_consen 2 EKIRVSELAKELGVPSKEIIKKLFK 26 (54)
T ss_dssp -EE-TTHHHHHHSSSHHHHHHHH-H
T ss_pred CceEHHHHHHHHCcCHHHHHHHHHH
Confidence 3578999999999999998888844
No 276
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]
Probab=46.92 E-value=29 Score=33.04 Aligned_cols=45 Identities=16% Similarity=0.278 Sum_probs=41.6
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|.+.|+++++.-..|++++||+.||+|+.-+-+-|..|=..|.+.
T Consensus 6 R~~~Il~~l~~~g~v~v~eLa~~~~VS~~TIRRDL~~Le~~g~l~ 50 (253)
T COG1349 6 RHQKILELLKEKGKVSVEELAELFGVSEMTIRRDLNELEEQGLLL 50 (253)
T ss_pred HHHHHHHHHHHcCcEEHHHHHHHhCCCHHHHHHhHHHHHHCCcEE
Confidence 678899999999999999999999999999999999999988775
No 277
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=46.82 E-value=1.2e+02 Score=33.12 Aligned_cols=128 Identities=18% Similarity=0.102 Sum_probs=79.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHH-----HhhhccchhHHHHHH---HH----HHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKE-----VRRLDDKLLLVDIDL---LE----SKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e-----~~~~~~~~~~~e~~l---~~----~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
+.-++.++...|=..+|+.+..++--. |+..-....+.+.+. .+ .++|..+||+..=-.+|++|.-+.
T Consensus 401 q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawEls 480 (777)
T KOG1128|consen 401 QRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELS 480 (777)
T ss_pred HHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHh
Confidence 558999999999999998888877433 333322333333222 22 457888888888888888887776
Q ss_pred ccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc-------cCC-----hhHHHHHHHHHHHHHHhcCc
Q 014555 198 NAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA-------LED-----PRAVFSLKYMLLCKIMVSQA 263 (422)
Q Consensus 198 ~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~-------~~~-----~~~~~~lky~vL~~lL~~~~ 263 (422)
+.+. +.-+.+-|..+...+||..+..+|-.+++-..- .|- .+...++++.--|.-|.+.+
T Consensus 481 n~~s------arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~ 552 (777)
T KOG1128|consen 481 NYIS------ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDN 552 (777)
T ss_pred hhhh------HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCc
Confidence 5442 333344455555679999999988877653321 111 23444555555565555443
No 278
>TIGR02844 spore_III_D sporulation transcriptional regulator SpoIIID. Members of this protein are the transcriptional regulator SpoIIID, or stage III sporulation protein D. It is present in genomes if and only if the species is capable of endospore formation as occurs in the model species Bacillus subtilis. SpoIIID is a DNA binding protein that, in B. subtilis, downregulates many genes but also turns on ten genes.
Probab=46.52 E-value=28 Score=26.95 Aligned_cols=34 Identities=12% Similarity=0.217 Sum_probs=28.7
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHH
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKL 364 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l 364 (422)
|.+-|++++.. .++++.+||+.+|+|..-|-+.|
T Consensus 7 R~~~I~e~l~~-~~~ti~dvA~~~gvS~~TVsr~L 40 (80)
T TIGR02844 7 RVLEIGKYIVE-TKATVRETAKVFGVSKSTVHKDV 40 (80)
T ss_pred HHHHHHHHHHH-CCCCHHHHHHHhCCCHHHHHHHh
Confidence 45667777777 99999999999999998888755
No 279
>PRK14165 winged helix-turn-helix domain-containing protein/riboflavin kinase; Provisional
Probab=46.20 E-value=1.2e+02 Score=28.34 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=47.2
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCC
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~ 390 (422)
+....-...||.++||+.++++..-+-+.|.+|-..|-|.-..|..+..|.+++.-
T Consensus 13 lg~l~~~~~IS~~eLA~~L~iS~~Tvsr~Lk~LEe~GlI~R~~~~r~~~v~LTekG 68 (217)
T PRK14165 13 LGAVNNTVKISSSEFANHTGTSSKTAARILKQLEDEGYITRTIVPRGQLITITEKG 68 (217)
T ss_pred HhccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEcCCceEEEECHHH
Confidence 33444456899999999999999999999999999999999998877777776543
No 280
>PF02002 TFIIE_alpha: TFIIE alpha subunit; InterPro: IPR024550 The general transcription factor TFIIE has an essential role in eukaryotic transcription initiation, together with RNA polymerase II and other general factors. Human TFIIE consists of two subunits, TFIIE-alpha and TFIIE-beta, and joins the preinitiation complex after RNA polymerase II and TFIIF []. This entry represents a helix-turn-helix (HTH) domain found in eukaryotic TFIIE-alpha []. It is also found in proteins from archaebacteria that are presumed to be TFIIE-alpha subunits [], the transcriptional regulator SarR, and also DNA-directed RNA polymerase III subunit Rpc3.; PDB: 1VD4_A 1Q1H_A.
Probab=45.31 E-value=25 Score=28.38 Aligned_cols=51 Identities=16% Similarity=0.062 Sum_probs=31.0
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceee--eecCCCEEEEecCCc
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT--LDQGVGCLIIFEDPK 391 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk--IDq~~g~v~~~~~~~ 391 (422)
...++-++||+.+|++..++-+.|.+|-.+|.+... =|...|.-..+|--+
T Consensus 25 ~~~l~de~la~~~~l~~~~vRkiL~~L~~~~lv~~~~~~d~~~~~~~~yw~i~ 77 (105)
T PF02002_consen 25 KGELTDEDLAKKLGLKPKEVRKILYKLYEDGLVSYRRRKDDERGWTRYYWYID 77 (105)
T ss_dssp H--B-HHHHHHTT-S-HHHHHHHHHHHHHHSS-EEEEE--------EEEEE-T
T ss_pred cCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCeEEEEEEcCCCcEEEEEEEEc
Confidence 457888999999999999999999999999999653 344445556666444
No 281
>PF13730 HTH_36: Helix-turn-helix domain
Probab=45.17 E-value=28 Score=24.22 Aligned_cols=29 Identities=7% Similarity=0.108 Sum_probs=26.6
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
|.++||+.+|++..-|.+.+-++...|-|
T Consensus 27 S~~~la~~~g~s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 27 SQETLAKDLGVSRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCcCC
Confidence 78999999999999999999999988754
No 282
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.63 E-value=3.2e+02 Score=26.96 Aligned_cols=88 Identities=23% Similarity=0.348 Sum_probs=55.5
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH--HhhccCCCCchhhHHHHHH
Q 014555 136 LLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAAR--TAANAIYVPPAQQGTIDLQ 213 (422)
Q Consensus 136 ~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~--~~~~~i~~~~~i~a~i~~~ 213 (422)
-+...+-+.+|+..+..+. |...+.-++.-+|+-+....+|+..++.+++.-- ..+..+ ++
T Consensus 87 SLY~A~i~ADALrV~~~~~------D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~---------in-- 149 (459)
T KOG4340|consen 87 SLYKACIYADALRVAFLLL------DNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQ---------IN-- 149 (459)
T ss_pred HHHHhcccHHHHHHHHHhc------CCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchh---------cc--
Confidence 3455667777776665553 2223333455556777888899999988876531 111111 11
Q ss_pred HHHHhchhhcHHHHHHHHHHH--hhhhhc
Q 014555 214 SGILHAEEKDYKTAYSYFFEA--FEAFNA 240 (422)
Q Consensus 214 ~g~~~~~~~dy~~A~~~f~ea--~~~~~~ 240 (422)
.|-+...+++|+.|.+.|-++ +.+|..
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqp 178 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQP 178 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCc
Confidence 456666899999999999988 445553
No 283
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.38 E-value=38 Score=22.97 Aligned_cols=40 Identities=8% Similarity=0.035 Sum_probs=27.1
Q ss_pred HHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHH
Q 014555 51 TELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVR 90 (422)
Q Consensus 51 ~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~ 90 (422)
..+++.|++.||.++-.+.+..+..--+.--+..+.+++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~~~~q~~eA~~LL~ 42 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEGDEAQRQEARALLA 42 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 3678999999999999999988875322222444444443
No 284
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional
Probab=44.09 E-value=34 Score=32.85 Aligned_cols=45 Identities=7% Similarity=0.128 Sum_probs=40.3
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
|...|+.+++...+++..+||+.||+|..-+.+-|..|-..|.+.
T Consensus 18 R~~~Il~~L~~~~~vtv~eLa~~l~VS~~TIRRDL~~Le~~G~l~ 62 (269)
T PRK09802 18 RREQIIQRLRQQGSVQVNDLSALYGVSTVTIRNDLAFLEKQGIAV 62 (269)
T ss_pred HHHHHHHHHHHcCCEeHHHHHHHHCCCHHHHHHHHHHHHhCCCeE
Confidence 567778888888889999999999999999999999998888875
No 285
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=43.97 E-value=7.6 Score=41.27 Aligned_cols=101 Identities=18% Similarity=0.148 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
..+.+.-++.+++.|++..|..++..|... ........+..+..+++.+..++...|...+..... ... ++..
T Consensus 24 ~~~~L~Aa~a~l~~g~~~~A~~ll~~l~~~---~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~--~~l--~~~~ 96 (536)
T PF04348_consen 24 AQLLLLAARALLQEGDWAQAQALLNQLDPQ---QLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDL--WQL--PPEQ 96 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhcccc---cCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCc--ccC--CHHH
Confidence 444568889999999999999999988632 112355778889999999999999999888764211 111 5566
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
+..+....+.++...+++..|.+.+...
T Consensus 97 ~~~~~~l~A~a~~~~~~~l~Aa~~~i~l 124 (536)
T PF04348_consen 97 QARYHQLRAQAYEQQGDPLAAARERIAL 124 (536)
T ss_dssp ----------------------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 6777777888888888888888766554
No 286
>PF08280 HTH_Mga: M protein trans-acting positive regulator (MGA) HTH domain; InterPro: IPR013199 Mga is a DNA-binding protein that activates the expression of several important virulence genes in group A streptococcus in response to changing environmental conditions [].; PDB: 2WTE_A 3SQN_A.
Probab=43.96 E-value=54 Score=23.48 Aligned_cols=39 Identities=8% Similarity=0.231 Sum_probs=29.6
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
|.-.|+.++---..++++++|+.+|+|...+-..+..+=
T Consensus 6 rq~~Ll~~L~~~~~~~~~ela~~l~~S~rti~~~i~~L~ 44 (59)
T PF08280_consen 6 RQLKLLELLLKNKWITLKELAKKLNISERTIKNDINELN 44 (59)
T ss_dssp HHHHHHHHHHHHTSBBHHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555447889999999999999999988887754
No 287
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional
Probab=43.70 E-value=29 Score=32.93 Aligned_cols=39 Identities=10% Similarity=0.165 Sum_probs=35.4
Q ss_pred HHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
|.+.|+.++..+.+|+..+||+.||+|+.-+-+-|..+=
T Consensus 8 R~~~I~~~l~~~~~v~v~eLa~~~~VS~~TIRRDL~~Le 46 (252)
T PRK10681 8 RIGQLLQALKRSDKLHLKDAAALLGVSEMTIRRDLNAHS 46 (252)
T ss_pred HHHHHHHHHHHcCCCcHHHHHHHhCCCHHHHHHHHHHhh
Confidence 678889999999999999999999999999999888744
No 288
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=43.43 E-value=46 Score=20.20 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=21.5
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
....-|..+...++|.+|..+|-.+.+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 345578889999999999999998865
No 289
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=43.29 E-value=55 Score=30.46 Aligned_cols=45 Identities=13% Similarity=0.180 Sum_probs=39.9
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
..|+.+.+--..+|.+.||+.||+++.-|-.++-.+..+|.+...
T Consensus 14 ~~il~lL~~~g~~sa~elA~~Lgis~~avR~HL~~Le~~Glv~~~ 58 (218)
T COG2345 14 ERILELLKKSGPVSADELAEELGISPMAVRRHLDDLEAEGLVEVE 58 (218)
T ss_pred HHHHHHHhccCCccHHHHHHHhCCCHHHHHHHHHHHHhCcceeee
Confidence 445666666789999999999999999999999999999999877
No 290
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=43.08 E-value=5e+02 Score=28.69 Aligned_cols=114 Identities=9% Similarity=-0.067 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHH
Q 014555 106 QIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPK 185 (422)
Q Consensus 106 ~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~k 185 (422)
-..+++.+++.+-. +.-+ ...++.++.+.+.+++|+..+...+.- +. ...+.+...+.+....|.+.+
T Consensus 105 a~~~l~~~~~~~Pd----~~~a--~~~~a~~L~~~~~~eeA~~~~~~~l~~----~p--~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 105 GLAVWRGIHQRFPD----SSEA--FILMLRGVKRQQGIEAGRAEIELYFSG----GS--SSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHHHHHHHHhhCCC----cHHH--HHHHHHHHHHhccHHHHHHHHHHHhhc----CC--CCHHHHHHHHHHHHHhcchHH
Confidence 34566666665421 1223 238899999999999999888877632 11 233444555678889999999
Q ss_pred HHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 186 AKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 186 ak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
|-.+|+++.. .+.. ++ ....--|..++..|+..+|...|..++.-+
T Consensus 173 A~~~y~~~~~-~~p~--~~----~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 173 ADACFERLSR-QHPE--FE----NGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHh-cCCC--cH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 9999998866 2211 11 222335666777788888888887776544
No 291
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=43.03 E-value=4.7e+02 Score=28.34 Aligned_cols=90 Identities=18% Similarity=0.064 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC-CCchhhHHHH---HHHHHHhchh
Q 014555 146 ALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY-VPPAQQGTID---LQSGILHAEE 221 (422)
Q Consensus 146 A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~-~~~~i~a~i~---~~~g~~~~~~ 221 (422)
...++..|-..+++..+........|+.+-.+-.-++|-+||.++-.+.- ...|. .++.+|.-|. .+-|+-.+..
T Consensus 435 ~~~li~~L~~~iy~~~~~~~r~rA~Lc~IY~~AL~d~~~~ARDllLmShl-qe~I~~~D~~tQILyNR~~vQLGLcAFR~ 513 (595)
T PF05470_consen 435 PSELIDRLCKYIYKDGDERLRTRAMLCHIYHHALHDRYYEARDLLLMSHL-QESIQHSDISTQILYNRAMVQLGLCAFRA 513 (595)
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHH-HHhhhccCHHHHHHHhHHHHHHHHHHHHc
Confidence 45667777777776666777888888888555566799999998876532 12221 1344554444 4567777788
Q ss_pred hcHHHHHHHHHHHhh
Q 014555 222 KDYKTAYSYFFEAFE 236 (422)
Q Consensus 222 ~dy~~A~~~f~ea~~ 236 (422)
|...+|..++.|.+.
T Consensus 514 G~I~eah~~L~el~~ 528 (595)
T PF05470_consen 514 GLIKEAHQCLSELCS 528 (595)
T ss_pred CCHHHHHHHHHHHHc
Confidence 888888888888764
No 292
>TIGR01884 cas_HTH CRISPR locus-related DNA-binding protein. Most but not all examples of this family are associated with CRISPR loci, a combination of DNA repeats and characteristic proteins encoded near the repeat cluster. The C-terminal region of this protein is homologous to DNA-binding helix-turn-helix domains with predicted transcriptional regulatory activity.
Probab=42.71 E-value=73 Score=29.00 Aligned_cols=42 Identities=7% Similarity=0.145 Sum_probs=35.0
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeee
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL 377 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkI 377 (422)
.++..+..++..+||+.+|++..-+-+.|.+|...|.|.-.-
T Consensus 150 ~~l~~~g~~s~~eia~~l~is~stv~r~L~~Le~~GlI~r~~ 191 (203)
T TIGR01884 150 EVLKAEGEKSVKNIAKKLGKSLSTISRHLRELEKKGLVEQKG 191 (203)
T ss_pred HHHHHcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEc
Confidence 333334579999999999999999999999999999887553
No 293
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=42.61 E-value=1.3e+02 Score=25.87 Aligned_cols=52 Identities=15% Similarity=0.055 Sum_probs=41.2
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee--e--eecCCC-EEEEecCCc
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG--T--LDQGVG-CLIIFEDPK 391 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--k--IDq~~g-~v~~~~~~~ 391 (422)
+...++=++||+.+|++..+|-+.|.+|-.+|.+.. + -|..+| ....+|.-+
T Consensus 12 ~~~~~~dedLa~~l~i~~n~vRkiL~~L~ed~~~~~~~~~e~~~~~~~~~~~yw~i~ 68 (147)
T smart00531 12 RNGCVTEEDLAELLGIKQKQLRKILYLLYDEKLIKIDYKREKDPETKTWYRYYWYIN 68 (147)
T ss_pred hcCCcCHHHHHHHhCCCHHHHHHHHHHHHhhhcchhheeeeeCCCCceEEEEEEEec
Confidence 456799999999999999999999999999777533 2 455667 677777554
No 294
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=42.19 E-value=2e+02 Score=23.91 Aligned_cols=99 Identities=15% Similarity=0.014 Sum_probs=70.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
-.+|..+-..|+.++|..++...+.. +. +.....+..+.-...+..+|.+.+|...++.+..- .+ ++.+...+
T Consensus 5 ~~~A~a~d~~G~~~~Ai~~Y~~Al~~--gL-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p-~~~~~~~l 77 (120)
T PF12688_consen 5 YELAWAHDSLGREEEAIPLYRRALAA--GL-SGADRRRALIQLASTLRNLGRYDEALALLEEALEE---FP-DDELNAAL 77 (120)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc--CC-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CC-CccccHHH
Confidence 36677788899999999999887653 22 23344455555677888999999999999876432 23 33455666
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
....+......+++++|.+.+..++-
T Consensus 78 ~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 66667777778899999988887753
No 295
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.04 E-value=3.4e+02 Score=26.44 Aligned_cols=96 Identities=18% Similarity=0.111 Sum_probs=60.4
Q ss_pred cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC-CHHHHHHHHHHHHHhhc
Q 014555 120 EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR-NLPKAKAALTAARTAAN 198 (422)
Q Consensus 120 ~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~-n~~kak~~l~~a~~~~~ 198 (422)
+.+-|. .|+.+|...|++..|...+..-.+ ...++.-+-.-+-++.++..-+ +..+++.++.++.+..
T Consensus 155 d~egW~------~Lg~~ym~~~~~~~A~~AY~~A~r----L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D- 223 (287)
T COG4235 155 DAEGWD------LLGRAYMALGRASDALLAYRNALR----LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD- 223 (287)
T ss_pred CchhHH------HHHHHHHHhcchhHHHHHHHHHHH----hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-
Confidence 456677 899999999999999888776542 2222111112222344444433 6678889998887653
Q ss_pred cCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHH
Q 014555 199 AIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 199 ~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ 232 (422)
|..+.+... -|.-++.++||..|...+-
T Consensus 224 ----~~~iral~l--LA~~afe~g~~~~A~~~Wq 251 (287)
T COG4235 224 ----PANIRALSL--LAFAAFEQGDYAEAAAAWQ 251 (287)
T ss_pred ----CccHHHHHH--HHHHHHHcccHHHHHHHHH
Confidence 334444333 4556678899998886443
No 296
>PRK03902 manganese transport transcriptional regulator; Provisional
Probab=41.30 E-value=2e+02 Score=24.36 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=38.8
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.+......++++.||+.++++..-|-..|.+|...|.|.-. ..+.+.+++.
T Consensus 15 ~l~~~~~~~~~~ela~~l~vs~~svs~~l~~L~~~Gli~~~---~~~~i~LT~~ 65 (142)
T PRK03902 15 LLIEEKGYARVSDIAEALSVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTPK 65 (142)
T ss_pred HHHhcCCCcCHHHHHHHhCCChhHHHHHHHHHHHCCCEEEe---cCceEEECHH
Confidence 34444456788999999999999999999999999988632 2355666553
No 297
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=40.31 E-value=7.3e+02 Score=29.83 Aligned_cols=77 Identities=17% Similarity=0.208 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHH
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKA 186 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~ka 186 (422)
.++++..++.+.+...+|+ +.+++++...+-++|-.+|..-+.-+ ++..-++++.--+++-+..||.+|.
T Consensus 1550 ~ell~~m~KKF~q~~~vW~------~y~~fLl~~ne~~aa~~lL~rAL~~l----Pk~eHv~~IskfAqLEFk~GDaeRG 1619 (1710)
T KOG1070|consen 1550 DELLRLMLKKFGQTRKVWI------MYADFLLRQNEAEAARELLKRALKSL----PKQEHVEFISKFAQLEFKYGDAERG 1619 (1710)
T ss_pred HHHHHHHHHHhcchhhHHH------HHHHHHhcccHHHHHHHHHHHHHhhc----chhhhHHHHHHHHHHHhhcCCchhh
Confidence 4556666665554557787 67888888877778877777766544 4456788888888899999999999
Q ss_pred HHHHHHH
Q 014555 187 KAALTAA 193 (422)
Q Consensus 187 k~~l~~a 193 (422)
|++++--
T Consensus 1620 RtlfEgl 1626 (1710)
T KOG1070|consen 1620 RTLFEGL 1626 (1710)
T ss_pred HHHHHHH
Confidence 9988754
No 298
>PF03081 Exo70: Exo70 exocyst complex subunit; InterPro: IPR004140 The Exo70 protein forms one subunit of the exocyst complex. First discovered in Saccharomyces cerevisiae [], Exo70 and other exocyst proteins have been observed in several other eukaryotes, including humans. In S. cerevisiae, the exocyst complex is involved in the late stages of exocytosis, and is localized at the tip of the bud, the major site of exocytosis in yeast []. Exo70 interacts with the Rho3 GTPase []. This interaction mediates one of the three known functions of Rho3 in cell polarity: vesicle docking and fusion with the plasma membrane (the other two functions are regulation of actin polarity and transport of exocytic vesicles from the mother cell to the bud) []. In humans, the functions of Exo70 and the exocyst complex are less well characterised: Exo70 is expressed in several tissues and is thought to also be involved in exocytosis [].; GO: 0006887 exocytosis, 0000145 exocyst; PDB: 2PFV_A 2B7M_B 2B1E_A 2PFT_A.
Probab=40.18 E-value=68 Score=32.01 Aligned_cols=80 Identities=16% Similarity=0.226 Sum_probs=54.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHH
Q 014555 283 LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEK 362 (422)
Q Consensus 283 i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~ 362 (422)
-..+++..+.|++ .|+++...++.--..||.++..+..=...++.-++.++.+-|..+.+ .-.+-+..+++++|.
T Consensus 292 ~~~~ke~f~~Fn~----~fee~~~~q~~~~vpD~~LR~~Lr~~i~~~v~p~Y~~F~~~~~~~~~-~~~Kyikyt~~~le~ 366 (371)
T PF03081_consen 292 RELLKEKFKKFNS----AFEEIYKAQKTWKVPDPELREELRREIKEKVVPAYRRFYERYRNSQF-NPEKYIKYTPEDLEN 366 (371)
T ss_dssp HHHHHHHHHHHHH----HHHHHHHHHTT---S-HHHHHHHHHHHHHHHHHHHHHHHHHCCCCSS-SHCCC-SS-HHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHcCcceecCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-CCCCCCccCHHHHHH
Confidence 3456777777754 57777766655455799988666666666666777888888988888 666678899999999
Q ss_pred HHHhh
Q 014555 363 KLSQM 367 (422)
Q Consensus 363 ~l~~m 367 (422)
.|.+|
T Consensus 367 ~l~~L 371 (371)
T PF03081_consen 367 MLNEL 371 (371)
T ss_dssp HHHTC
T ss_pred HHHcC
Confidence 88764
No 299
>KOG3252 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.82 E-value=1.1e+02 Score=27.65 Aligned_cols=93 Identities=13% Similarity=0.188 Sum_probs=67.6
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhC-CChHH
Q 014555 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIE-LPIDH 359 (422)
Q Consensus 281 ~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~-l~~~e 359 (422)
.++..+..|..-..++++..|-...+.+.+.| +++.-+.+.|+.-+=..+.-.|..|.=.-+|+++| ++-.+
T Consensus 96 e~~r~ii~L~~~LEt~~Fq~FW~~~~~N~~ml-------e~itGFedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~ 168 (217)
T KOG3252|consen 96 EPFRSIIDLGDYLETCRFQQFWQEADENRDML-------EGITGFEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQ 168 (217)
T ss_pred cchhHHHhHHHHHhhchHHHHhhhhccchHHh-------cCCCcHHHHHHHHHHHheechHhhchHHHHHHhhCcccHHH
Confidence 45666778888889999999986666554433 44455666666555555666899999999999998 56678
Q ss_pred HHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 360 VEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 360 vE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+|..+.+ +|-+.+.+|.+.+-
T Consensus 169 le~~~~~-------~GW~a~e~G~ifv~ 189 (217)
T KOG3252|consen 169 LEVWMTK-------YGWIADESGQIFVA 189 (217)
T ss_pred HHHHHHH-------ccceecCCceEEEe
Confidence 8877765 57788888866553
No 300
>KOG2235 consensus Uncharacterized conserved protein [Function unknown]
Probab=39.72 E-value=1.4e+02 Score=32.00 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=48.5
Q ss_pred HHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 319 HRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 319 ~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+|+.+.+.|.++- .--..|+++++|+.+++|.+.+...|..-.+..-|.|++|- |++..
T Consensus 114 e~Y~d~iaeEinekL-----qE~gqvtiaeLakq~dl~sellqs~l~ek~lg~iikgr~dg--gviyT 174 (776)
T KOG2235|consen 114 EEYVDRIAEEINEKL-----QEQGQVTIAELAKQWDLPSELLQSLLIEKLLGSIIKGRVDG--GVIYT 174 (776)
T ss_pred HHHHHHHHHHHHHHH-----HHhcchHHHHHHHhcCCcHHHHHHHHHHHhhccceeeeecC--CEEee
Confidence 467777777666542 33488999999999999999999999888777778999987 66654
No 301
>KOG1861 consensus Leucine permease transcriptional regulator [Transcription]
Probab=39.53 E-value=2.1e+02 Score=29.85 Aligned_cols=53 Identities=13% Similarity=0.164 Sum_probs=34.9
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHhhCCHHHHHHHH
Q 014555 134 AALLMESREYTEALTLLTSLVKEVRRL---DDKLLLVDIDLLESKLHFSLRNLPKAKAAL 190 (422)
Q Consensus 134 a~~~~~~g~~~~A~~~l~~l~~e~~~~---~~~~~~~e~~l~~~~~~~~~~n~~kak~~l 190 (422)
|+|-++.||.+| .+..+..++.. .-+....||..+.+-+|+..+|....-..+
T Consensus 355 ARIALEkGD~~E----fNQCQtQLk~LY~egipg~~~EF~AYriLY~i~tkN~~di~sll 410 (540)
T KOG1861|consen 355 ARIALEKGDLEE----FNQCQTQLKALYSEGIPGAYLEFTAYRILYYIFTKNYPDILSLL 410 (540)
T ss_pred hHHHHhcCCHHH----HHHHHHHHHHHHccCCCCchhhHHHHHHHHHHHhcCchHHHHHH
Confidence 667778887666 33333333322 223348999999999999999988554443
No 302
>PF05331 DUF742: Protein of unknown function (DUF742); InterPro: IPR007995 This family consists of several uncharacterised Streptomyces proteins as well as one from Mycobacterium tuberculosis. The function of these proteins is unknown.
Probab=39.39 E-value=49 Score=27.49 Aligned_cols=43 Identities=19% Similarity=0.207 Sum_probs=36.4
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
+.|+.++.. ..|..+||..+++|...+--+++.|+..|.+...
T Consensus 46 ~~Il~lC~~--~~SVAEiAA~L~lPlgVvrVLvsDL~~~G~v~v~ 88 (114)
T PF05331_consen 46 RAILELCRR--PLSVAEIAARLGLPLGVVRVLVSDLADAGLVRVR 88 (114)
T ss_pred HHHHHHHCC--CccHHHHHHhhCCCchhhhhhHHHHHhCCCEEEe
Confidence 345555555 7899999999999999999999999999988653
No 303
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=39.16 E-value=4.2e+02 Score=31.66 Aligned_cols=95 Identities=14% Similarity=0.096 Sum_probs=59.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
.+|+.+|...+++++|.++++..++... +...+...-+...+..++-..|+.++.+|....-+ +-+-.+
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk-----~eHv~~ 1602 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK-----QEHVEF 1602 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch-----hhhHHH
Confidence 4899999999999999999999887765 12333333344555666668888898888665322 222223
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
-...+.+-..-||-..+...|-....
T Consensus 1603 IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred HHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 33344444455555555555544443
No 304
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=38.88 E-value=2.9e+02 Score=25.40 Aligned_cols=99 Identities=21% Similarity=0.165 Sum_probs=67.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
.+|+.-+.+.|++.||...+++-+.-++.. |.. +.|-.++..++.+++..|...++.--..... ..+.-=
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~-d~a----~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa-----~r~pd~ 162 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAH-DAA----MLLGLAQAQFAIQEFAAAQQTLEDLMEYNPA-----FRSPDG 162 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCC-CHH----HHHHHHHHHHhhccHHHHHHHHHHHhhcCCc-----cCCCCc
Confidence 489999999999999998888766444432 332 2334567888999999998888765332211 111111
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...|.|.+|-+.|-.+...|+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~yp 191 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYP 191 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCC
Confidence 23467777788999999999888877664
No 305
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=38.64 E-value=2.8e+02 Score=27.09 Aligned_cols=100 Identities=18% Similarity=0.129 Sum_probs=61.6
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGI 216 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~ 216 (422)
+.+.++|++|+..++.-+.- +++. --+|--.+..|..+|.+..|-.-.++|..+ +|.-. +-+.--|+
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l----~P~n--AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~ys-kay~RLG~ 157 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIEL----DPTN--AVYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYS-KAYGRLGL 157 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhc----CCCc--chHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHH-HHHHHHHH
Confidence 44567889988877765532 2221 124556788999999998885444444333 32222 22233678
Q ss_pred HhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHH
Q 014555 217 LHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLK 251 (422)
Q Consensus 217 ~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lk 251 (422)
.+...++|..|...|-.+.+-.. +++.+..-|+
T Consensus 158 A~~~~gk~~~A~~aykKaLeldP--~Ne~~K~nL~ 190 (304)
T KOG0553|consen 158 AYLALGKYEEAIEAYKKALELDP--DNESYKSNLK 190 (304)
T ss_pred HHHccCcHHHHHHHHHhhhccCC--CcHHHHHHHH
Confidence 88899999999988877765322 2345555544
No 306
>PRK11534 DNA-binding transcriptional regulator CsiR; Provisional
Probab=38.51 E-value=71 Score=29.32 Aligned_cols=62 Identities=13% Similarity=0.180 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
....++.|++.-+..-+.|=.+++-..||+.||+|..-|-.-|..+..+|.+.- -+..|+.+
T Consensus 9 ~~~vy~~i~~~I~~g~l~pG~~L~e~eLae~lgVSRtpVREAL~~L~~eGlv~~--~~~~G~~V 70 (224)
T PRK11534 9 ALDGYRWLKNDIIRGNFQPDEKLRMSLLTSRYALGVGPLREALSQLVAERLVTV--VNQKGYRV 70 (224)
T ss_pred hHHHHHHHHHHHHhCCCCCCCcCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEE--eCCCceEe
Confidence 355777788888888888989999999999999999999999999999999974 34455544
No 307
>KOG2582 consensus COP9 signalosome, subunit CSN3 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=38.50 E-value=3.7e+02 Score=27.18 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRL---DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~---~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
...+....++.++|.-++..+..-.++..+. .++...+..+..-.-.|+..+|+.+|.-.|+.+-++
T Consensus 143 H~~l~~~~L~ak~y~~~~p~ld~divei~~~n~h~~~k~fL~Y~yYgg~iciglk~fe~Al~~~e~~v~~ 212 (422)
T KOG2582|consen 143 HADLLQLCLEAKDYASVLPYLDDDIVEICKANPHLDPKYFLLYLYYGGMICIGLKRFERALYLLEICVTT 212 (422)
T ss_pred HHHHHHHHHHhhcccccCCccchhHHHHhccCCCCCHHHHHHHHHhcceeeeccccHHHHHHHHHHHHhc
Confidence 4467777778888888888888777777554 357788888877888889999999999999887654
No 308
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=38.34 E-value=4.8e+02 Score=27.16 Aligned_cols=115 Identities=11% Similarity=-0.038 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHh---cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCH
Q 014555 107 IALCKEMVQWTRA---EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNL 183 (422)
Q Consensus 107 ~~l~~~~i~~~~~---~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~ 183 (422)
++.++.++++... ++.+|+= -.++++...|+.++|.+.++.... . ...-+....-.+.+.+-.++...||
T Consensus 249 ~~~a~~lL~~~~~~yP~s~lfl~-----~~gR~~~~~g~~~~Ai~~~~~a~~-~-q~~~~Ql~~l~~~El~w~~~~~~~w 321 (468)
T PF10300_consen 249 LEEAEELLEEMLKRYPNSALFLF-----FEGRLERLKGNLEEAIESFERAIE-S-QSEWKQLHHLCYFELAWCHMFQHDW 321 (468)
T ss_pred HHHHHHHHHHHHHhCCCcHHHHH-----HHHHHHHHhcCHHHHHHHHHHhcc-c-hhhHHhHHHHHHHHHHHHHHHHchH
Confidence 4556666666543 4556651 445668889999999999986541 1 1112333444556667778889999
Q ss_pred HHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcH-------HHHHHHHHHH
Q 014555 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDY-------KTAYSYFFEA 234 (422)
Q Consensus 184 ~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy-------~~A~~~f~ea 234 (422)
.+|-..+......+ .| -.+.|....|..+...++. ++|..+|.++
T Consensus 322 ~~A~~~f~~L~~~s-----~W-Ska~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 322 EEAAEYFLRLLKES-----KW-SKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHHHHHHHHHHhcc-----cc-HHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 99977766554432 22 2444555555555544444 5555555554
No 309
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=38.34 E-value=6.4e+02 Score=28.60 Aligned_cols=121 Identities=15% Similarity=0.139 Sum_probs=61.3
Q ss_pred HHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHH---HHHHHHHHhcchhHHhhH
Q 014555 52 ELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALC---KEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 52 ~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~---~~~i~~~~~~~r~~lr~~ 128 (422)
.++++|.+.++.|-..-.+-++. .+..+..+|...+ .|+..+.+..++ ...++.+ ..+|=|..
T Consensus 762 nmA~McVkT~RLDVAkVClGhm~-------~aRgaRAlR~a~q----~~~e~eakvAvLAieLgMlEeA---~~lYr~ck 827 (1416)
T KOG3617|consen 762 NMASMCVKTRRLDVAKVCLGHMK-------NARGARALRRAQQ----NGEEDEAKVAVLAIELGMLEEA---LILYRQCK 827 (1416)
T ss_pred HHHHHhhhhccccHHHHhhhhhh-------hhhhHHHHHHHHh----CCcchhhHHHHHHHHHhhHHHH---HHHHHHHH
Confidence 44666666665555443333332 3455566666655 232223332221 1122222 22332211
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
=---|-++|-..|.|++|.++-.. .|+.++=..|..-++..-+.+|.+.|-.+|+++.
T Consensus 828 R~DLlNKlyQs~g~w~eA~eiAE~--------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~ 885 (1416)
T KOG3617|consen 828 RYDLLNKLYQSQGMWSEAFEIAET--------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAG 885 (1416)
T ss_pred HHHHHHHHHHhcccHHHHHHHHhh--------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcC
Confidence 011244556668888888764332 3444555555555666667788888888887763
No 310
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=38.22 E-value=2.8e+02 Score=24.47 Aligned_cols=56 Identities=29% Similarity=0.316 Sum_probs=37.9
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..+.+..++...++.++...+-.. |.. ..++.+.|.+|+..++|.+|.+.|-+.-.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLR------P~~-~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLR------PEF-PELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhC------CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345566667777777776555543 221 35677888888888888888888877643
No 311
>PF05584 Sulfolobus_pRN: Sulfolobus plasmid regulatory protein; InterPro: IPR008848 This family consists of several plasmid regulatory proteins from the extreme thermophilic and acidophilic archaea Sulfolobus.
Probab=38.18 E-value=87 Score=23.76 Aligned_cols=33 Identities=9% Similarity=0.064 Sum_probs=31.4
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
+++++++-+.+|++.+++=-.|++|-..|.|.-
T Consensus 18 c~TLeeL~ekTgi~k~~LlV~LsrL~k~GiI~R 50 (72)
T PF05584_consen 18 CCTLEELEEKTGISKNTLLVYLSRLAKRGIIER 50 (72)
T ss_pred cCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeee
Confidence 999999999999999999999999999999864
No 312
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.02 E-value=2.6e+02 Score=29.44 Aligned_cols=92 Identities=13% Similarity=0.062 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-+-.+.+++-.|++..|.+-++.++. .+.....+ |+..+-+|...+|..+.-..+.+|..+...- | .
T Consensus 329 l~~~gtF~fL~g~~~~a~~d~~~~I~----l~~~~~~l--yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n---~----d 395 (606)
T KOG0547|consen 329 LLLRGTFHFLKGDSLGAQEDFDAAIK----LDPAFNSL--YIKRAAAYADENQSEKMWKDFNKAEDLDPEN---P----D 395 (606)
T ss_pred HHHhhhhhhhcCCchhhhhhHHHHHh----cCcccchH--HHHHHHHHhhhhccHHHHHHHHHHHhcCCCC---C----c
Confidence 34667888999999998887777653 22221111 3333445555555555555555555443211 1 1
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
++.+.|.+.+--.+|+.|...|-++
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Ka 420 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKA 420 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHH
Confidence 2334445555555555555555544
No 313
>PF10078 DUF2316: Uncharacterized protein conserved in bacteria (DUF2316); InterPro: IPR018757 Members of this family of hypothetical bacterial proteins have no known function.
Probab=37.34 E-value=30 Score=27.41 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=22.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHH
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLS 365 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~ 365 (422)
+.++.+.+|..||++++++|+.|.
T Consensus 22 ~~ls~~~ia~dL~~s~~~le~vL~ 45 (89)
T PF10078_consen 22 SGLSLEQIAADLGTSPEHLEQVLN 45 (89)
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHc
Confidence 789999999999999999998764
No 314
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=37.15 E-value=69 Score=27.28 Aligned_cols=45 Identities=2% Similarity=0.105 Sum_probs=40.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..++..+||+.++++..-+=..|-+|...|-|.=..|..|+-...
T Consensus 53 ~~~t~~eLa~~l~i~~~tvsr~l~~Le~~GlI~R~~~~~DrR~~~ 97 (144)
T PRK11512 53 ACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKRGVL 97 (144)
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCcccCCeeE
Confidence 469999999999999999999999999999999998887774433
No 315
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=36.78 E-value=4.5e+02 Score=26.36 Aligned_cols=131 Identities=15% Similarity=0.174 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhhcCCCChhHH--HHHHHHHHHHHH----h----cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 014555 86 AKIVRGIIDAVAKIPGTSELQ--IALCKEMVQWTR----A----EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 86 ~k~v~~~l~~~~~~~~~~~~~--~~l~~~~i~~~~----~----~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
.++++.+.+++--..+ +++ -.+|....+.-. . -..-|-+. .+++.|+..|-+.+|.+.++.-++
T Consensus 178 p~l~kaLFey~fyhen--Dv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~----Q~gkCylrLgm~r~AekqlqssL~ 251 (478)
T KOG1129|consen 178 PTLVKALFEYLFYHEN--DVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQ----QMGKCYLRLGMPRRAEKQLQSSLT 251 (478)
T ss_pred hHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhccccccccchHhHHHHH----HHHHHHHHhcChhhhHHHHHHHhh
Confidence 4677888887754333 332 123333333211 0 02345566 889999999999999988887654
Q ss_pred HHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 156 EVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 156 e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
. ...+|.+++-+++|-..+...+|-..+.... .+. |-.+. +..-.+++|-.-+++.+|.++|-++.
T Consensus 252 q-------~~~~dTfllLskvY~ridQP~~AL~~~~~gl---d~f--P~~VT--~l~g~ARi~eam~~~~~a~~lYk~vl 317 (478)
T KOG1129|consen 252 Q-------FPHPDTFLLLSKVYQRIDQPERALLVIGEGL---DSF--PFDVT--YLLGQARIHEAMEQQEDALQLYKLVL 317 (478)
T ss_pred c-------CCchhHHHHHHHHHHHhccHHHHHHHHhhhh---hcC--Cchhh--hhhhhHHHHHHHHhHHHHHHHHHHHH
Confidence 3 2367888888999999998888755544332 122 21221 12224555666678888988888775
Q ss_pred h
Q 014555 236 E 236 (422)
Q Consensus 236 ~ 236 (422)
+
T Consensus 318 k 318 (478)
T KOG1129|consen 318 K 318 (478)
T ss_pred h
Confidence 4
No 316
>PF14493 HTH_40: Helix-turn-helix domain
Probab=36.54 E-value=39 Score=26.53 Aligned_cols=33 Identities=18% Similarity=0.270 Sum_probs=30.3
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCC-ce
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKK-FA 374 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~-i~ 374 (422)
.-.+++.||+.-|+++.-|+.+|++++..|. +.
T Consensus 12 ~G~si~eIA~~R~L~~sTI~~HL~~~~~~g~~~~ 45 (91)
T PF14493_consen 12 KGLSIEEIAKIRGLKESTIYGHLAELIESGEPLD 45 (91)
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 4689999999999999999999999999998 44
No 317
>PF04539 Sigma70_r3: Sigma-70 region 3; InterPro: IPR007624 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 3 forms a discrete compact three helical domain within the sigma-factor. Region is not normally involved in the recognition of promoter DNA, but in some specific bacterial promoters containing an extended -10 promoter element, residues within region 3 play an important role. Region 3 primarily is involved in binding the core RNA polymerase in the holoenzyme [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1L0O_C 1KU2_B 1RP3_C 1SC5_A 1TTY_A 2BE5_F 2A6E_F 2CW0_F 2A69_P 2A6H_P ....
Probab=36.48 E-value=49 Score=24.81 Aligned_cols=37 Identities=19% Similarity=0.203 Sum_probs=26.1
Q ss_pred HHHHHHhhccc-ccccchhHHHHhCCChHHHHHHHHhh
Q 014555 331 EQNLCRLIEPY-SRVEIAHIAELIELPIDHVEKKLSQM 367 (422)
Q Consensus 331 ~~~l~~i~~pY-s~I~l~~la~~l~l~~~evE~~l~~m 367 (422)
.++..++..-+ +.-+..+||+.+|++++++...+...
T Consensus 7 ~~a~~~L~~~lgr~Pt~eEiA~~lgis~~~v~~~l~~~ 44 (78)
T PF04539_consen 7 ERARRELEQELGREPTDEEIAEELGISVEEVRELLQAS 44 (78)
T ss_dssp HHHHHHHHHHHSS--BHHHHHHHHTS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHcccHHHHHHHHHhC
Confidence 34555555555 67899999999999999999888653
No 318
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=36.46 E-value=39 Score=29.07 Aligned_cols=36 Identities=8% Similarity=0.058 Sum_probs=28.1
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
|-..-++..|++.+|+|++.|. ++|.+|+|.-.-+.
T Consensus 43 p~~~ati~eV~e~tgVs~~~I~----~~IreGRL~~~~~~ 78 (137)
T TIGR03826 43 ENRQATVSEIVEETGVSEKLIL----KFIREGRLQLKHFP 78 (137)
T ss_pred CCCCCCHHHHHHHHCcCHHHHH----HHHHcCCeeccCCC
Confidence 3455899999999999987766 78888999754433
No 319
>PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3
Probab=36.43 E-value=89 Score=21.25 Aligned_cols=24 Identities=8% Similarity=0.184 Sum_probs=20.9
Q ss_pred ccchhHHHHhCCChHHHHHHHHhh
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQM 367 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~m 367 (422)
.++..+|+.+|++.+.|.+.+-+.
T Consensus 28 ~s~~~vA~~~~vs~~TV~ri~~~~ 51 (52)
T PF13542_consen 28 RSFKDVARELGVSWSTVRRIFDRY 51 (52)
T ss_pred CCHHHHHHHHCCCHHHHHHHHHhh
Confidence 799999999999999998877543
No 320
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=36.33 E-value=4.4e+02 Score=26.08 Aligned_cols=42 Identities=21% Similarity=0.313 Sum_probs=29.3
Q ss_pred HHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHh
Q 014555 52 ELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAV 96 (422)
Q Consensus 52 ~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~ 96 (422)
++++.|...|.|++..++..+++......|. ..+|+.+.+-+
T Consensus 111 ~Lm~~ci~~g~y~eALel~~~~~~L~~~~~~---~~lv~~i~~ev 152 (338)
T PF04124_consen 111 QLMDTCIRNGNYSEALELSAHVRRLQSRFPN---IPLVKSIAQEV 152 (338)
T ss_pred HHHHHHHhcccHhhHHHHHHHHHHHHHhccC---chhHHHHHHHH
Confidence 5688999999999988888887776655554 23344444433
No 321
>PF10007 DUF2250: Uncharacterized protein conserved in archaea (DUF2250); InterPro: IPR019254 Members of this family of hypothetical archaeal proteins have no known function.
Probab=36.09 E-value=70 Score=25.48 Aligned_cols=43 Identities=12% Similarity=0.173 Sum_probs=32.2
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
..|++.+..+-.=.-..||..+++|.++|+..+-++...|.|.
T Consensus 10 ~~IL~hl~~~~~Dy~k~ia~~l~~~~~~v~~~l~~Le~~GLle 52 (92)
T PF10007_consen 10 LKILQHLKKAGPDYAKSIARRLKIPLEEVREALEKLEEMGLLE 52 (92)
T ss_pred HHHHHHHHHHCCCcHHHHHHHHCCCHHHHHHHHHHHHHCCCeE
Confidence 3444444444444456789999999999999999999998764
No 322
>PF04492 Phage_rep_O: Bacteriophage replication protein O ; InterPro: IPR006497 This entry is represented by the N-terminal domain of Bacteriophage lambda, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; GO: 0006260 DNA replication
Probab=35.93 E-value=88 Score=25.29 Aligned_cols=35 Identities=31% Similarity=0.458 Sum_probs=33.2
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
++..+|+.+.++++.|++.+.|.+.+..+|..|-|
T Consensus 50 Kk~d~Is~sq~~e~tg~~~~~V~~al~~Li~~~vI 84 (100)
T PF04492_consen 50 KKMDRISNSQIAEMTGLSRDHVSKALNELIRRGVI 84 (100)
T ss_pred CccceeeHHHHHHHHCcCHHHHHHHHHHHHHCCCE
Confidence 56789999999999999999999999999999988
No 323
>PF08281 Sigma70_r4_2: Sigma-70, region 4; InterPro: IPR013249 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif [].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 2LFW_A 1OR7_B 2H27_D 2O8X_B.
Probab=35.92 E-value=38 Score=23.37 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=21.8
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
++...+..+||+.+|+|+..|...+.+..
T Consensus 23 ~~~g~s~~eIa~~l~~s~~~v~~~l~ra~ 51 (54)
T PF08281_consen 23 YFQGMSYAEIAEILGISESTVKRRLRRAR 51 (54)
T ss_dssp HTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHCcCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45788999999999999999999988754
No 324
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=35.86 E-value=5.3e+02 Score=26.96 Aligned_cols=261 Identities=10% Similarity=0.119 Sum_probs=120.9
Q ss_pred HHHHhhcCC-hHHHHHHHHhhcCC--CCCchHHHHHHHHHHHH----HHHHHH----HcccHHHHHHHHHHhchhhcccc
Q 014555 13 IAQAKEASN-PSDAISMLYRVLDD--PSSSSEALRVKELAITE----LSDLLR----QENRAQDLCNLLTQLRPFFSLIP 81 (422)
Q Consensus 13 ~ak~~~~~~-~~~Ai~~l~~i~~~--~~~~~~~~~~~~~~~~~----l~~~~~----~~~~~~~l~~~~~~l~~~~~~~~ 81 (422)
+|.++-+++ .+++-..+..+++. .+. ..|.-+.+-. +++-|+ +....+-+-+++..+.-+.+.+-
T Consensus 134 ~a~sLIe~g~f~EgR~iLn~i~~~llkrE----~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~ 209 (549)
T PF07079_consen 134 EAHSLIETGRFSEGRAILNRIIERLLKRE----CEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIH 209 (549)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHhhhh----hcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHH
Confidence 455555553 56666666666543 121 2244444433 333322 22334444555555544443321
Q ss_pred ----hhHH-----HHHHHHHHHHhhcCCCChhHHHHHHHHHHH-HHHh---cchhHHhhHHHHHHHHHHHhcccHHHHHH
Q 014555 82 ----KAKT-----AKIVRGIIDAVAKIPGTSELQIALCKEMVQ-WTRA---EKRTFLRQRVEARLAALLMESREYTEALT 148 (422)
Q Consensus 82 ----k~~~-----~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~-~~~~---~~r~~lr~~l~~~La~~~~~~g~~~~A~~ 148 (422)
+++. +.++..+++++--.|.. ++..+-+.++ |-+. .+...|=+.|--+...--++.+.+-+++.
T Consensus 210 ~~d~~~Y~k~~peeeL~s~imqhlfi~p~e---~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia 286 (549)
T PF07079_consen 210 AFDQRPYEKFIPEEELFSTIMQHLFIVPKE---RLPPLMQILENWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIA 286 (549)
T ss_pred HHhhchHHhhCcHHHHHHHHHHHHHhCCHh---hccHHHHHHHHHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHH
Confidence 1222 36888999998877743 3344444444 6321 11112211111122222222233333332
Q ss_pred HHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHH
Q 014555 149 LLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAY 228 (422)
Q Consensus 149 ~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~ 228 (422)
... ...+ +..+++-.-...-.+...++-.+|++++.--......+.++.++...-+....+++..+.+|....
T Consensus 287 ~~~--i~~L-----ke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr 359 (549)
T PF07079_consen 287 SSK--IEKL-----KEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLR 359 (549)
T ss_pred HHh--HHHH-----HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHH
Confidence 221 1111 223444444444456677888888888776555543333333444444444455554455554333
Q ss_pred --HHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHH
Q 014555 229 --SYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETAL 305 (422)
Q Consensus 229 --~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l 305 (422)
-.|+|....|+ .++.+...|++-.+= ++... .+. .+..+ .+..++..|.+.|+ +++...
T Consensus 360 ~yL~lwe~~qs~D----iDrqQLvh~L~~~Ak------~lW~~-g~~-----dekal-nLLk~il~ft~yD~-ec~n~v 420 (549)
T PF07079_consen 360 DYLNLWEEIQSYD----IDRQQLVHYLVFGAK------HLWEI-GQC-----DEKAL-NLLKLILQFTNYDI-ECENIV 420 (549)
T ss_pred HHHHHHHHHHhhc----ccHHHHHHHHHHHHH------HHHhc-CCc-----cHHHH-HHHHHHHHhccccH-HHHHHH
Confidence 35667666555 466777777654331 23221 111 11123 23456677888888 455443
No 325
>PF00440 TetR_N: Bacterial regulatory proteins, tetR family; InterPro: IPR001647 This entry represents a DNA-binding domain with a helix-turn-helix (HTH) structure that is found in several bacterial and archaeal transcriptional regulators, such as TetR, the tetracycline resistance repressor. Numerous other transcriptional regulatory proteins also contain HTH-type DNA-binding domains, and can be grouped into subfamiles based on sequence similarity. The domain represented by this entry is found in a subfamily of proteins that includes the transcriptional regulators TetR, TetC, AcrR, BetI, Bm3R1, EnvR, QacR, MtrR, TcmR, Ttk, YbiH, and YhgD [, , ]. Many of these proteins function as repressors that control the level of susceptibility to hydrophobic antibiotics and detergents. They all have similar molecular weights, ranging from 21 to 25 kDa. The helix-turn-helix motif is located in the initial third of the protein. The 3D structure of the homodimeric TetR protein complexed with 7-chloro-tetracycline-magnesium has been determined to 2.1 A resolution []. TetR folds into ten alpha-helices with connecting turns and loops. The three N-terminal alpha-helices of the repressor form the DNA-binding domain: this structural motif encompasses an HTH fold with an inverse orientation compared with that of other DNA-binding proteins.; GO: 0003677 DNA binding; PDB: 3NPI_B 3IUV_A 3CCY_A 2JK3_A 2FX0_A 2JJ7_A 2WV1_B 3BTI_D 3BR6_E 3BR5_A ....
Probab=35.84 E-value=64 Score=21.69 Aligned_cols=30 Identities=20% Similarity=0.161 Sum_probs=22.7
Q ss_pred HHHHHhh-cccccccchhHHHHhCCChHHHH
Q 014555 332 QNLCRLI-EPYSRVEIAHIAELIELPIDHVE 361 (422)
Q Consensus 332 ~~l~~i~-~pYs~I~l~~la~~l~l~~~evE 361 (422)
.++..+. +.|..+|+..||+..|++..-+-
T Consensus 4 aa~~l~~~~G~~~~s~~~Ia~~~gvs~~~~y 34 (47)
T PF00440_consen 4 AALELFAEKGYEAVSIRDIARRAGVSKGSFY 34 (47)
T ss_dssp HHHHHHHHHHTTTSSHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHhCHHhCCHHHHHHHHccchhhHH
Confidence 3343444 47999999999999999976554
No 326
>TIGR03338 phnR_burk phosphonate utilization associated transcriptional regulator. This family of proteins are members of the GntR family (pfam00392) containing an N-terminal helix-turn-helix (HTH) motif. This clade is found adjacent to or inside of operons for the degradation of 2-aminoethylphosphonate (AEP) in Polaromonas, Burkholderia, Ralstonia and Verminephrobacter.
Probab=35.60 E-value=1.2e+02 Score=27.57 Aligned_cols=63 Identities=11% Similarity=0.139 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+.+++.|++.-+..-+.|=.+++-..||+.||+|..-|-.-|..+-.+|.+.- -+..|+.+..
T Consensus 14 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVReAL~~L~~eGlv~~--~~~~G~~V~~ 76 (212)
T TIGR03338 14 TLVQDEIERAILSGELPPGAKLNESDIAARLGVSRGPVREAFRALEEAGLVRN--EKNRGVFVRE 76 (212)
T ss_pred HHHHHHHHHHHHcCCCCCCCEecHHHHHHHhCCChHHHHHHHHHHHHCCCEEE--ecCCCeEEec
Confidence 45677777777777788889999999999999999999999999999999864 4455766654
No 327
>PRK13777 transcriptional regulator Hpr; Provisional
Probab=35.43 E-value=2.4e+02 Score=25.48 Aligned_cols=50 Identities=6% Similarity=-0.058 Sum_probs=40.7
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
++.++.....++.++||+.++++..-+=..+.+|-..|-|.=..|..|+-
T Consensus 50 iL~~L~~~~~itq~eLa~~l~l~~sTvtr~l~rLE~kGlI~R~~~~~DrR 99 (185)
T PRK13777 50 ILWIAYHLKGASISEIAKFGVMHVSTAFNFSKKLEERGYLTFSKKEDDKR 99 (185)
T ss_pred HHHHHHhCCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEecCCCCCCC
Confidence 33444445679999999999999999999999999999999777766663
No 328
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.23 E-value=7.8e+02 Score=28.69 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSL 153 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l 153 (422)
..|++-++.|=++.|++..+++
T Consensus 611 ~IAqLCEKAGL~qraLehytDl 632 (1666)
T KOG0985|consen 611 EIAQLCEKAGLLQRALEHYTDL 632 (1666)
T ss_pred HHHHHHHhcchHHHHHHhcccH
Confidence 7899999999999999887776
No 329
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=35.08 E-value=1.7e+02 Score=21.12 Aligned_cols=50 Identities=20% Similarity=0.299 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhh
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRR 159 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~ 159 (422)
++-++++++..+.. |--+.. .+....-|++.|++++|.+.+.++..++..
T Consensus 6 ~~~~~~~~~~lR~~-RHD~~N--hLqvI~gllqlg~~~~a~eYi~~~~~~~~~ 55 (62)
T PF14689_consen 6 LEELEELIDSLRAQ-RHDFLN--HLQVIYGLLQLGKYEEAKEYIKELSKDLQQ 55 (62)
T ss_dssp HHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-hHHHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33344444444332 222223 458888899999999999999999877653
No 330
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=35.03 E-value=3.6e+02 Score=25.09 Aligned_cols=115 Identities=23% Similarity=0.255 Sum_probs=0.0
Q ss_pred HHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHh
Q 014555 215 GILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHS 294 (422)
Q Consensus 215 g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~ 294 (422)
|--.+..|+|..|.+.|-+|+..-.++ +...+.+.|.==++-+..-+.-=..|-+-.-+......-..++..=+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~--~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPST--STEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccc--cHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Q ss_pred cCCHHHHHHHHHHhHHhhhcCh---hHHHhHHHHHHHHHHHH
Q 014555 295 KRSLKLFETALRDFKAQLEEDP---IVHRHLSSLYDTLLEQN 333 (422)
Q Consensus 295 ~~dl~~f~~~l~~~~~~l~~D~---~l~~~~~~L~~~i~~~~ 333 (422)
+. ..|...++.|+..+..|| -.+..+..|-..|-++|
T Consensus 180 k~--ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~ern 219 (271)
T KOG4234|consen 180 KM--EKYEEALEDYKKILESDPSRREAREAIARLPPKINERN 219 (271)
T ss_pred hh--hhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHHHH
No 331
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=34.99 E-value=5.5e+02 Score=28.11 Aligned_cols=38 Identities=16% Similarity=0.160 Sum_probs=29.6
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhh
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQ 207 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~ 207 (422)
.-.++++.=+.+-..+|.+.+|+++|.-+..+ |||++.
T Consensus 656 ~~r~mclrFAdlEtklGEidRARaIya~~sq~-----~dPr~~ 693 (835)
T KOG2047|consen 656 KAREMCLRFADLETKLGEIDRARAIYAHGSQI-----CDPRVT 693 (835)
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc-----CCCcCC
Confidence 45577777778888999999999998776554 588876
No 332
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=34.82 E-value=3e+02 Score=27.53 Aligned_cols=73 Identities=18% Similarity=0.130 Sum_probs=49.6
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHH
Q 014555 134 AALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQ 213 (422)
Q Consensus 134 a~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~ 213 (422)
++.|+...+|..|...+++=++. +..|+.+..-+|.-.+-..+.+||+..|-.-..+|++.. |..+.|.|+..
T Consensus 88 GN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~-----P~h~Ka~~R~A 160 (390)
T KOG0551|consen 88 GNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLK-----PTHLKAYIRGA 160 (390)
T ss_pred hHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC-----cchhhhhhhhh
Confidence 44455666788888877765442 346788888899999999999999877744444444432 44666777733
No 333
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=34.71 E-value=1.8e+02 Score=24.10 Aligned_cols=48 Identities=19% Similarity=0.212 Sum_probs=38.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~~ 389 (422)
..|++++||+.+..|..-+-.+|-+|...|-|.=+--.+.| .++|..+
T Consensus 18 ~~vtl~elA~~l~cS~Rn~r~lLkkm~~~gWi~W~pg~GRG~~S~L~~l~~ 68 (115)
T PF12793_consen 18 VEVTLDELAELLFCSRRNARTLLKKMQEEGWITWQPGRGRGNRSQLTFLKS 68 (115)
T ss_pred cceeHHHHHHHhCCCHHHHHHHHHHHHHCCCeeeeCCCCCCCCCeeEEeeC
Confidence 57999999999999999999999999999999644444443 5555443
No 334
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=34.55 E-value=95 Score=20.31 Aligned_cols=33 Identities=12% Similarity=0.107 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTAANAIY 201 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~ 201 (422)
++.....+.+...||+.|-.-|.+|..+..+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~ 35 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEELL 35 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence 344444555666666666666666665555444
No 335
>PRK04239 hypothetical protein; Provisional
Probab=34.46 E-value=30 Score=28.56 Aligned_cols=50 Identities=22% Similarity=0.385 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcccccccchhHHHHhCCC--hHHHHHHHHhhhhcCCceeeeec
Q 014555 328 TLLEQNLCRLIEPYSRVEIAHIAELIELP--IDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 328 ~i~~~~l~~i~~pYs~I~l~~la~~l~l~--~~evE~~l~~mI~~g~i~gkIDq 379 (422)
..+...|.+++.|--+=.|.+|+= -=| ...||..|.+|...|.|.++||-
T Consensus 37 ~qk~~iL~qiLt~eAreRL~rI~l--vkPe~A~~VE~~liqlAq~G~i~~ki~e 88 (110)
T PRK04239 37 AQKQAILRQILTPEARERLNRIKL--VKPEFAEQVEQQLIQLAQSGRIQGPIDD 88 (110)
T ss_pred HHHHHHHHHHCCHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 345566888888866655555542 112 36899999999999999999863
No 336
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=34.37 E-value=2.8e+02 Score=23.30 Aligned_cols=42 Identities=10% Similarity=-0.001 Sum_probs=37.2
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
.++..+||+.++++..-+-+.+-+|...|-|.-.-|..|+-.
T Consensus 46 ~~t~~eLa~~l~~~~~tvt~~v~~Le~~GlV~r~~~~~DrR~ 87 (144)
T PRK03573 46 EQSQIQLAKAIGIEQPSLVRTLDQLEEKGLISRQTCASDRRA 87 (144)
T ss_pred CCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeecCCCCcCe
Confidence 467899999999999999999999999999999888777643
No 337
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=34.36 E-value=2.4e+02 Score=23.67 Aligned_cols=112 Identities=23% Similarity=0.200 Sum_probs=60.5
Q ss_pred hhhcHHHHHHHHHHHhhhhhccCCh-----hHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHh
Q 014555 220 EEKDYKTAYSYFFEAFEAFNALEDP-----RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHS 294 (422)
Q Consensus 220 ~~~dy~~A~~~f~ea~~~~~~~~~~-----~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~ 294 (422)
.++|..++...+-+.+. ..-++ +....++.+++++......... .....+...+..+.+.|.
T Consensus 26 ~~~d~~~~l~~~~~l~~---~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~----------~~~~~~~~~~~~~a~~~~ 92 (143)
T PF12169_consen 26 LEGDAAEALELLNELLE---QGKDPKQFLDDLIEYLRDLLLYKITGDKSNLL----------ELSEEEEEKLKELAKKFS 92 (143)
T ss_dssp HTT-HHHHHHHHHHHHH---CT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG------------CTTTHHHHHHHHHHS-
T ss_pred HcCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHHHHHHHhCCchhhcc----------cCCHHHHHHHHHHHHcCC
Confidence 56788888777777654 21222 4456666677766655321111 012345677888888888
Q ss_pred cCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHH
Q 014555 295 KRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAEL 352 (422)
Q Consensus 295 ~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~ 352 (422)
...+..+.+.+......+..-+. .+-..|..+++++.+....+.+.+.+.
T Consensus 93 ~~~l~~~~~~l~~~~~~lr~s~~--------pr~~lE~~llrl~~~~~~~~~~~~~~~ 142 (143)
T PF12169_consen 93 PERLQRILQILLEAENELRYSSN--------PRILLEMALLRLCQLKSLPSPDELLKR 142 (143)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSSS--------HHHHHHHHHHHHHHTC-----------
T ss_pred HHHHHHHHHHHHHHHHHhccCCC--------hHHHHHHHHHHHHHHhhcccccccccc
Confidence 88888888777776665554332 234458888888887776666665543
No 338
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=34.26 E-value=60 Score=17.83 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=18.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLV 154 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~ 154 (422)
.++..+...|++++|...++..+
T Consensus 6 ~~a~~~~~~~~~~~a~~~~~~~~ 28 (34)
T smart00028 6 NLGNAYLKLGDYDEALEYYEKAL 28 (34)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHH
Confidence 67888888999999988777654
No 339
>COG3413 Predicted DNA binding protein [General function prediction only]
Probab=34.22 E-value=38 Score=31.25 Aligned_cols=47 Identities=11% Similarity=0.092 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHH-hhcccccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 323 SSLYDTLLEQNLCR-LIEPYSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 323 ~~L~~~i~~~~l~~-i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
.+-..+++..++.. +..+=+++++.+||+.||++..-+..+|.++..
T Consensus 157 TdrQ~~vL~~A~~~GYFd~PR~~~l~dLA~~lGISkst~~ehLRrAe~ 204 (215)
T COG3413 157 TDRQLEVLRLAYKMGYFDYPRRVSLKDLAKELGISKSTLSEHLRRAER 204 (215)
T ss_pred CHHHHHHHHHHHHcCCCCCCccCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 44444444444422 222228999999999999999988888887654
No 340
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=34.12 E-value=1.5e+02 Score=22.93 Aligned_cols=49 Identities=6% Similarity=0.031 Sum_probs=38.5
Q ss_pred hhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHH
Q 014555 17 KEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNL 69 (422)
Q Consensus 17 ~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~ 69 (422)
+-.+ +...|+.....+++.....+ ..|+++-.+...+.+.|++.++.++
T Consensus 16 LY~~~~~~~Al~~W~~aL~k~~~~~----~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 16 LYHQNETQQALQKWRKALEKITDRE----DRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred HhccchHHHHHHHHHHHHhhcCChH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344 36899999999998765432 5799999999999999988887654
No 341
>PF12324 HTH_15: Helix-turn-helix domain of alkylmercury lyase; InterPro: IPR024259 Alkylmercury lyase (EC:4.99.1.2) cleaves the carbon-mercury bond of organomercurials such as phenylmercuric acetate. This entry represents the N-terminal helix-turn-helix domain.; PDB: 3FN8_B 3F2G_B 3F0P_A 3F2F_B 3F2H_A 3F0O_B 1S6L_A.
Probab=33.94 E-value=75 Score=24.43 Aligned_cols=36 Identities=25% Similarity=0.409 Sum_probs=25.1
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
.|++.+.-=.-|+...||..+|.|+++|...|..|=
T Consensus 28 ~LLr~LA~G~PVt~~~LA~a~g~~~e~v~~~L~~~p 63 (77)
T PF12324_consen 28 PLLRLLAKGQPVTVEQLAAALGWPVEEVRAALAAMP 63 (77)
T ss_dssp HHHHHHTTTS-B-HHHHHHHHT--HHHHHHHHHH-T
T ss_pred HHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHhCC
Confidence 345555446779999999999999999999998874
No 342
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=33.75 E-value=2.1e+02 Score=29.66 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=45.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHH-HHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLV-DIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~-e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
..|+..|...|+|++|+..++..+.- ++...-. ..+....-+|..+|+++.|...+.+|...
T Consensus 79 ~NLG~AL~~lGryeEAIa~f~rALeL----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 79 VNLGLSLFSKGRVKDALAQFETALEL----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhh----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 37888999999999999998886532 2211111 12444566888999999999999988765
No 343
>PF13934 ELYS: Nuclear pore complex assembly
Probab=33.73 E-value=3.9e+02 Score=24.80 Aligned_cols=138 Identities=18% Similarity=0.242 Sum_probs=69.0
Q ss_pred CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchh-hhhcccccccccCc
Q 014555 203 PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVA-GIISSKAGLQYVGP 281 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~-~ll~~~~~~~~~~~ 281 (422)
|+... ....|..++..++|+.|..++.+.... +..- .-++..++....+.+. ..+... . + ...
T Consensus 76 p~~~~---~~~~g~W~LD~~~~~~A~~~L~~ps~~------~~~~----~~Il~~L~~~~~~~lAL~y~~~~-~-p-~l~ 139 (226)
T PF13934_consen 76 PPKYI---KFIQGFWLLDHGDFEEALELLSHPSLI------PWFP----DKILQALLRRGDPKLALRYLRAV-G-P-PLS 139 (226)
T ss_pred CHHHH---HHHHHHHHhChHhHHHHHHHhCCCCCC------cccH----HHHHHHHHHCCChhHHHHHHHhc-C-C-CCC
Confidence 54444 677899999999999999988665211 1111 1133344433333321 111110 0 0 111
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHH-
Q 014555 282 ELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHV- 360 (422)
Q Consensus 282 ~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~ev- 360 (422)
..+....+..+..++.+.+-......+.+... ..+...+.++.+..-. +-..+.+++++|-++.
T Consensus 140 s~~~~~~~~~~La~~~v~EAf~~~R~~~~~~~---------~~l~e~l~~~~~~~~~------~~~~~~~Ll~LPl~~~E 204 (226)
T PF13934_consen 140 SPEALTLYFVALANGLVTEAFSFQRSYPDELR---------RRLFEQLLEHCLEECA------RSGRLDELLSLPLDEEE 204 (226)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHhCchhhh---------HHHHHHHHHHHHHHhh------hhhHHHHHHhCCCChHH
Confidence 22444555566777877766655555433211 1222222233222211 5677888899996444
Q ss_pred HHHHHhhhhcC
Q 014555 361 EKKLSQMILDK 371 (422)
Q Consensus 361 E~~l~~mI~~g 371 (422)
|+++-+...++
T Consensus 205 E~~l~~~L~~~ 215 (226)
T PF13934_consen 205 EQWLEKYLRES 215 (226)
T ss_pred HHHHHHHHccC
Confidence 45555555443
No 344
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=33.53 E-value=96 Score=20.33 Aligned_cols=27 Identities=19% Similarity=0.397 Sum_probs=23.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
...+...||+.+|++...+-..+.+..
T Consensus 25 ~~~~~~~ia~~~~~s~~~i~~~~~~~~ 51 (55)
T cd06171 25 EGLSYEEIAEILGISRSTVRQRLHRAL 51 (55)
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 778999999999999999988887654
No 345
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=33.21 E-value=3.1e+02 Score=25.28 Aligned_cols=100 Identities=18% Similarity=0.170 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
+-+-+.||+-.+..+++.+|+..|.++-+.= +. .-.-+-.|.-.|.+...|.+..|++.++-+..- | |--
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa--~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~----y--pg~ 193 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PA--FRSPDGHLLFARTLAAQGKYADAESAFEVAISY----Y--PGP 193 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--Cc--cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh----C--CCH
Confidence 3345688899999999999999888875431 11 111123344578999999999999888766432 2 344
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
++.++ .|.+...+|.-.+|...+.+.+++.
T Consensus 194 ~ar~~--Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 194 QARIY--YAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHHHH--HHHHHHHhcchhHHHHHHHHHHHHH
Confidence 55444 5666667777777776676666543
No 346
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=33.00 E-value=4.4e+02 Score=25.16 Aligned_cols=135 Identities=13% Similarity=0.097 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHH-hchhhcHHHHHHHHHHHhhhhhccCChhHHH
Q 014555 170 DLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGIL-HAEEKDYKTAYSYFFEAFEAFNALEDPRAVF 248 (422)
Q Consensus 170 ~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~-~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~ 248 (422)
+..-++.....+....||.++.+|+... ...-.++...+.+ +.+.+|.+.|..-|=.+.+.|.. ++..
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~-------~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~--~~~~-- 72 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKDK-------RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS--DPDF-- 72 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCC-------CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT---HHH--
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcCC-------CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--CHHH--
Confidence 4444667777778999999999997321 2222445666777 44578888899999888888864 2222
Q ss_pred HHHHHHHHHHHhcCccchhhhhcccccccccCc--chHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcCh
Q 014555 249 SLKYMLLCKIMVSQADDVAGIISSKAGLQYVGP--ELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDP 316 (422)
Q Consensus 249 ~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~--~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~ 316 (422)
.+.|+=.- +-.++.++...+|.+-........ ..-|-+-+---..-||+.....+-+.+...+..++
T Consensus 73 ~~~Y~~~l-~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 73 WLEYLDFL-IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHHHHH-HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHHHHH-HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 22343111 112233334455655432211111 11232333333355677666666555554444433
No 347
>PF10668 Phage_terminase: Phage terminase small subunit; InterPro: IPR018925 This entry describes the terminase small subunit from Enterococcus phage phiFL1A, related proteins in other bacteriophage, and prophage regions of bacterial genomes. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site [].
Probab=32.99 E-value=69 Score=23.37 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=23.8
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHH
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLS 365 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~ 365 (422)
+..-+.+.=-.|++.+||+.||++...|-..=+
T Consensus 12 A~e~y~~~~g~i~lkdIA~~Lgvs~~tIr~WK~ 44 (60)
T PF10668_consen 12 AFEIYKESNGKIKLKDIAEKLGVSESTIRKWKS 44 (60)
T ss_pred HHHHHHHhCCCccHHHHHHHHCCCHHHHHHHhh
Confidence 333334444589999999999999888775543
No 348
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=32.71 E-value=5.7e+02 Score=28.88 Aligned_cols=105 Identities=16% Similarity=0.066 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc---chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 128 RVEARLAALLMESREYTEALTLLTSLVKEVRRLDD---KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 128 ~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~---~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
+|.+--|=.....+.+.+|-.+|..+-..++..++ +....++......+.+..+|+.+|....+.+..-.... .+
T Consensus 416 ~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~--~~ 493 (894)
T COG2909 416 RLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEA--AY 493 (894)
T ss_pred hHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccc--cc
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
.........-|-.++..|+|..|..+--++
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHH
No 349
>PF12854 PPR_1: PPR repeat
Probab=32.63 E-value=59 Score=20.31 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=18.0
Q ss_pred HHHHHHHhcccHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTS 152 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~ 152 (422)
-|.+-|++.|+.++|.+++.+
T Consensus 12 ~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 12 TLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HHHHHHHHCCCHHHHHHHHHh
Confidence 577789999999999988775
No 350
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.54 E-value=1.5e+02 Score=31.54 Aligned_cols=68 Identities=15% Similarity=0.014 Sum_probs=53.4
Q ss_pred hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 122 RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 122 r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
+.|--. ...|+..+...+.+.+|+...+..+.-.. .-.++|....-+|+.+||+.+|-..+.+|..+.
T Consensus 452 ~~w~p~--~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~------k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 452 IFWEPT--LNNLGHAYRKLNKYEEAIDYYQKALLLSP------KDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred cchhHH--HHhHHHHHHHHhhHHHHHHHHHHHHHcCC------CchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 335544 66899999999999999998887664322 245677777889999999999999999887664
No 351
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.46 E-value=1.1e+02 Score=34.20 Aligned_cols=58 Identities=21% Similarity=0.261 Sum_probs=43.8
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
-++|+..|.|.+|.+. +.. +|+....+....+..++.+++|..|++.|-+..+.|.++
T Consensus 365 Wk~yLd~g~y~kAL~~-------ar~---~p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEV 422 (911)
T KOG2034|consen 365 WKTYLDKGEFDKALEI-------ART---RPDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEV 422 (911)
T ss_pred HHHHHhcchHHHHHHh-------ccC---CHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHH
Confidence 4678899998888543 221 456667777788899999999999999888776666653
No 352
>TIGR02812 fadR_gamma fatty acid metabolism transcriptional regulator FadR. Members of this family are FadR, a transcriptional regulator of fatty acid metabolism, including both biosynthesis and beta-oxidation. It is found exclusively in a subset of Gammaproteobacteria, with strictly one copy per genome. It has an N-terminal DNA-binding domain and a less well conserved C-terminal long chain acyl-CoA-binding domain. FadR from this family heterologously expressed in Escherichia coli show differences in regulatory response and fatty acid binding profiles. The family is nevertheless designated equivalog, as all member proteins have at least nominally the same function.
Probab=32.45 E-value=1.2e+02 Score=27.99 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+..++.|++.-+..-+.|=.++ +-..||+.||+|..-|-.-|..+-.+|.|. +-+..|+.+.
T Consensus 9 ~~v~~~l~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~Le~eGlV~--~~~~~G~~V~ 71 (235)
T TIGR02812 9 GFAEEYIVESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLT--IQHGKPTKVN 71 (235)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEE--EeCCCccEec
Confidence 3466667777777777888999 799999999999999999999999999997 3445566554
No 353
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=32.36 E-value=64 Score=18.72 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=19.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
.+.+.|...|++++|.+++.++.+
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRE 28 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhH
Confidence 466778899999999988888753
No 354
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=32.33 E-value=6.6e+02 Score=26.94 Aligned_cols=92 Identities=18% Similarity=0.146 Sum_probs=46.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-.-.|+.+...++|.++.++...+..- |+ .-.+++...+-.+...||..+. +.-+-++....| +.-+.
T Consensus 247 l~~~ad~~y~~c~f~~c~kit~~lle~----dp--fh~~~~~~~ia~l~el~~~n~L---f~lsh~LV~~yP-~~a~s-- 314 (611)
T KOG1173|consen 247 LAEKADRLYYGCRFKECLKITEELLEK----DP--FHLPCLPLHIACLYELGKSNKL---FLLSHKLVDLYP-SKALS-- 314 (611)
T ss_pred HHHHHHHHHHcChHHHHHHHhHHHHhh----CC--CCcchHHHHHHHHHHhcccchH---HHHHHHHHHhCC-CCCcc--
Confidence 334566666677777777766666532 21 1223333334455555554433 333333332222 10000
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
=.+=|.||...++|..|.+||..|
T Consensus 315 -W~aVg~YYl~i~k~seARry~SKa 338 (611)
T KOG1173|consen 315 -WFAVGCYYLMIGKYSEARRYFSKA 338 (611)
T ss_pred -hhhHHHHHHHhcCcHHHHHHHHHH
Confidence 123566666777777888887765
No 355
>PRK10870 transcriptional repressor MprA; Provisional
Probab=32.13 E-value=2.3e+02 Score=25.20 Aligned_cols=43 Identities=0% Similarity=-0.090 Sum_probs=38.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
..++..+||+.++++..-+-..+-+|...|.|.-.-|..++-.
T Consensus 70 ~~it~~eLa~~l~l~~~tvsr~v~rLe~kGlV~R~~~~~DrR~ 112 (176)
T PRK10870 70 HSIQPSELSCALGSSRTNATRIADELEKRGWIERRESDNDRRC 112 (176)
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCCCe
Confidence 4688899999999999999999999999999998888887633
No 356
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.08 E-value=4.7e+02 Score=25.19 Aligned_cols=91 Identities=19% Similarity=0.177 Sum_probs=50.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
|..-+....|+--+|++-+.+.++.... | -|...+-+.+|+..++|.+|--.|+..--+. |..|...+++-
T Consensus 125 RKlAilka~GK~l~aIk~ln~YL~~F~~--D----~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~---P~n~l~f~rla 195 (289)
T KOG3060|consen 125 RKLAILKAQGKNLEAIKELNEYLDKFMN--D----QEAWHELAEIYLSEGDFEKAAFCLEELLLIQ---PFNPLYFQRLA 195 (289)
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHhcC--c----HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC---CCcHHHHHHHH
Confidence 4444555667666776555554433221 1 1333344557888899999987777654332 33445444332
Q ss_pred ----HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 ----LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ----~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..+| ..++..|.+||-.+.+
T Consensus 196 e~~Yt~gg-----~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 196 EVLYTQGG-----AENLELARKYYERALK 219 (289)
T ss_pred HHHHHHhh-----HHHHHHHHHHHHHHHH
Confidence 2333 3466667766666654
No 357
>KOG3431 consensus Apoptosis-related protein/predicted DNA-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.99 E-value=40 Score=28.16 Aligned_cols=54 Identities=13% Similarity=0.218 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 326 YDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 326 ~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
...++...|-+++.+--+=.|++||=.=-=-..-||.+|.+|+.-|.|.+||+.
T Consensus 38 q~e~r~~~lsQvLdqqAr~RLsrlAlvkpekAq~VE~~lirma~~gQvs~Kise 91 (129)
T KOG3431|consen 38 QEEMRQSMLSQVLDQQARERLSRLALVKPEKAQAVENYLIRMAQTGQVSHKISE 91 (129)
T ss_pred HHHHHHhHHHHHhhHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHhCCccccccH
Confidence 344445556666666555556665521111146799999999999999999863
No 358
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=31.96 E-value=1.3e+02 Score=32.34 Aligned_cols=89 Identities=11% Similarity=0.024 Sum_probs=60.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
-|+-+|...++++.|.-.++..+ ...+....+-++ ..+.+...|..++|-.+|++|-.+.-+-+ .+ +
T Consensus 494 GlG~vy~Kqek~e~Ae~~fqkA~----~INP~nsvi~~~--~g~~~~~~k~~d~AL~~~~~A~~ld~kn~-l~------~ 560 (638)
T KOG1126|consen 494 GLGTVYLKQEKLEFAEFHFQKAV----EINPSNSVILCH--IGRIQHQLKRKDKALQLYEKAIHLDPKNP-LC------K 560 (638)
T ss_pred hhhhheeccchhhHHHHHHHhhh----cCCccchhHHhh--hhHHHHHhhhhhHHHHHHHHHHhcCCCCc-hh------H
Confidence 67888888999999887777643 122333333344 36788899999999999999987754433 22 2
Q ss_pred HHHHHHhchhhcHHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFFE 233 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~e 233 (422)
...|.++..-++|.+|...|=|
T Consensus 561 ~~~~~il~~~~~~~eal~~LEe 582 (638)
T KOG1126|consen 561 YHRASILFSLGRYVEALQELEE 582 (638)
T ss_pred HHHHHHHHhhcchHHHHHHHHH
Confidence 2366666777888888765443
No 359
>PRK10225 DNA-binding transcriptional repressor UxuR; Provisional
Probab=31.66 E-value=1.4e+02 Score=28.04 Aligned_cols=64 Identities=14% Similarity=0.180 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
.+.+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-.-+..+-.+|.|.- .+..|+.+..
T Consensus 11 ~~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~~gVSRtpVREAL~~L~~eGlV~~--~~~~G~~V~~ 75 (257)
T PRK10225 11 YQEVGAMIRDLIIKTPYNPGERLPPEREIAEMLDVTRTVVREALIMLEIKGLVEV--RRGAGIYVLD 75 (257)
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE--ecCCEEEEeC
Confidence 35677777777777788898999 6899999999999999999999999999973 3445665543
No 360
>PF10771 DUF2582: Protein of unknown function (DUF2582); InterPro: IPR019707 This entry represents conserved proteins found in bacteria and archaea. The function is not known. ; PDB: 2L02_B 2L01_A.
Probab=31.52 E-value=1.3e+02 Score=22.31 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=38.4
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+++..-...|+++|++.++++.+++-.-+-=+..+++|. +++.+|.+.|
T Consensus 15 ~~L~~~~~~s~~el~k~~~l~~~~~~~AiGWLarE~KI~--~~~~~~~~~v 63 (65)
T PF10771_consen 15 QLLNENGEWSVSELKKATGLSDKEVYLAIGWLARENKIE--FEEKNGELYV 63 (65)
T ss_dssp HHHCCSSSEEHHHHHHHCT-SCHHHHHHHHHHHCTTSEE--EEEETTEEEE
T ss_pred HHHhhCCCcCHHHHHHHhCcCHHHHHHHHHHHhccCcee--EEeeCCEEEE
Confidence 344446789999999999999999998888888899984 5566666655
No 361
>PF13518 HTH_28: Helix-turn-helix domain
Probab=31.46 E-value=61 Score=21.91 Aligned_cols=37 Identities=11% Similarity=0.067 Sum_probs=29.8
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQG 380 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~ 380 (422)
..+...+|..+|++...|...+.+.=..| +.|-.+..
T Consensus 12 g~s~~~~a~~~gis~~tv~~w~~~y~~~G-~~~l~~~~ 48 (52)
T PF13518_consen 12 GESVREIAREFGISRSTVYRWIKRYREGG-IEGLKPKK 48 (52)
T ss_pred CCCHHHHHHHHCCCHhHHHHHHHHHHhcC-HHHhccCC
Confidence 44999999999999999999998887766 56655543
No 362
>COG1846 MarR Transcriptional regulators [Transcription]
Probab=31.42 E-value=2.5e+02 Score=22.17 Aligned_cols=36 Identities=17% Similarity=0.085 Sum_probs=34.6
Q ss_pred hhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 347 AHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 347 ~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
..||+.++++..-+-..+-+|...|.|.=..|..|+
T Consensus 40 ~~la~~l~i~~~~vt~~l~~Le~~glv~r~~~~~Dr 75 (126)
T COG1846 40 KELAERLGLDRSTVTRLLKRLEDKGLIERLRDPEDR 75 (126)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccc
Confidence 999999999999999999999999999999998887
No 363
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=31.14 E-value=6.9e+02 Score=26.83 Aligned_cols=110 Identities=15% Similarity=0.090 Sum_probs=68.7
Q ss_pred hhHHhhHHHHHH--HHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 122 RTFLRQRVEARL--AALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 122 r~~lr~~l~~~L--a~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
+++++.+..++| |.+-+..|++..|..+|+.+..++.+ .+++-+-.+-+-...||...+.. +....+....
T Consensus 359 ~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~pg------~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~~~ 431 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYPG------LVEVVLRKINWERRKGNLEDANY-KNELYSSIYE 431 (577)
T ss_pred hhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCCc------hhhhHHHHHhHHHHhcchhhhhH-HHHHHHHhcc
Confidence 344433333343 34455578999999999999887632 56666667777778888888775 3333333333
Q ss_pred CCCCchhhHHHHHHHHHH-hchhhcHHHHHHHHHHHhhhh
Q 014555 200 IYVPPAQQGTIDLQSGIL-HAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 200 i~~~~~i~a~i~~~~g~~-~~~~~dy~~A~~~f~ea~~~~ 238 (422)
-.+++-+.+.+...-.++ +...+|-..|..-+.++....
T Consensus 432 ~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~ 471 (577)
T KOG1258|consen 432 GKENNGILEKLYVKFARLRYKIREDADLARIILLEANDIL 471 (577)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcC
Confidence 334566666666544444 446777778887777775533
No 364
>PRK03837 transcriptional regulator NanR; Provisional
Probab=30.80 E-value=1.6e+02 Score=27.17 Aligned_cols=62 Identities=8% Similarity=0.037 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|++.-+..-+.|=.++ +-..||+.||+|..-|-+-|..+-.+|.|.-+ +..|+.+.
T Consensus 16 ~~v~~~l~~~I~~g~l~pG~~Lp~E~~Lae~~gVSRt~VREAL~~L~~eGlv~~~--~~~G~~V~ 78 (241)
T PRK03837 16 EEVEERLEQMIRSGEFGPGDQLPSERELMAFFGVGRPAVREALQALKRKGLVQIS--HGERARVS 78 (241)
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCCceeEe
Confidence 4577777777777777888999 89999999999999999999999999998763 55566554
No 365
>TIGR00498 lexA SOS regulatory protein LexA. LexA acts as a homodimer to repress a number of genes involved in the response to DNA damage (SOS response), including itself and RecA. RecA, in the presence of single-stranded DNA, acts as a co-protease to activate a latent autolytic protease activity (EC 3.4.21.88) of LexA, where the active site Ser is part of LexA. The autolytic cleavage site is an Ala-Gly bond in LexA (at position 84-85 in E. coli LexA; this sequence is replaced by Gly-Gly in Synechocystis). The cleavage leads to derepression of the SOS regulon and eventually to DNA repair. LexA in Bacillus subtilis is called DinR. LexA is much less broadly distributed than RecA.
Probab=30.68 E-value=71 Score=28.86 Aligned_cols=38 Identities=16% Similarity=0.095 Sum_probs=32.9
Q ss_pred ccchhHHHHhCCC-hHHHHHHHHhhhhcCCceeeeecCC
Q 014555 344 VEIAHIAELIELP-IDHVEKKLSQMILDKKFAGTLDQGV 381 (422)
Q Consensus 344 I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~gkIDq~~ 381 (422)
.+..+||+.+|++ ..-|-..|.+|...|-|...-.+..
T Consensus 26 ~~~~ela~~~~~~s~~tv~~~l~~L~~~g~i~~~~~~~~ 64 (199)
T TIGR00498 26 PSIREIARAVGLRSPSAAEEHLKALERKGYIERDPGKPR 64 (199)
T ss_pred CcHHHHHHHhCCCChHHHHHHHHHHHHCCCEecCCCCCC
Confidence 7889999999998 9999999999999999876544444
No 366
>PRK11414 colanic acid/biofilm transcriptional regulator; Provisional
Probab=30.23 E-value=96 Score=28.41 Aligned_cols=60 Identities=15% Similarity=0.174 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
+.+++.|++.-+..-++|=.+++-..||+.||+|..-|-.-|..+..+|.+.-. +..|+.
T Consensus 14 e~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGLV~~~--~~~g~~ 73 (221)
T PRK11414 14 LQVENDLKHQLSIGALKPGARLITKNLAEQLGMSITPVREALLRLVSVNALSVA--PAQAFT 73 (221)
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCchhHHHHHHHHHHCCCEEec--CCCcee
Confidence 457777777777777889899999999999999999999999999999999753 333544
No 367
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=30.15 E-value=80 Score=22.96 Aligned_cols=25 Identities=8% Similarity=0.315 Sum_probs=18.3
Q ss_pred HhCCChHHHHHHHHhhhhcCCceee
Q 014555 352 LIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 352 ~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
-.+.+.++++..|.+++.+|++...
T Consensus 30 ~~~~s~~eL~~fL~~lv~e~~L~~~ 54 (60)
T PF08672_consen 30 GYDISLEELQEFLDRLVEEGKLECS 54 (60)
T ss_dssp -TT--HHHHHHHHHHHHHTTSEE--
T ss_pred CCCCCHHHHHHHHHHHHHCCcEEec
Confidence 3567889999999999999998754
No 368
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=30.14 E-value=41 Score=21.08 Aligned_cols=16 Identities=38% Similarity=0.677 Sum_probs=14.6
Q ss_pred HHHHHHHhcccHHHHH
Q 014555 132 RLAALLMESREYTEAL 147 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~ 147 (422)
.||.+|...|++++|.
T Consensus 18 nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 18 NLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHHHCcCHHhhc
Confidence 8899999999999985
No 369
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=29.87 E-value=3.9e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=44.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
.|+-.+-..|+|++|+..+..-..- ..++. ..-+++ ..+++..||...|+..+..+......
T Consensus 74 gLG~~~Q~~g~~~~AI~aY~~A~~L--~~ddp--~~~~~a--g~c~L~lG~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 74 RLGECCQAQKHWGEAIYAYGRAAQI--KIDAP--QAPWAA--AECYLACDNVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc--CCCCc--hHHHHH--HHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 7788888899999999888765321 12222 222333 55888999999999999988777643
No 370
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=29.86 E-value=1.1e+02 Score=18.21 Aligned_cols=27 Identities=7% Similarity=0.149 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
++..++..|++.|+++...+.+..+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 345678899999999999988888875
No 371
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=29.76 E-value=2e+02 Score=22.45 Aligned_cols=38 Identities=29% Similarity=0.288 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLV 167 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~ 167 (422)
.+.+|.++...|++++|...+.+.+.-.....|..-+.
T Consensus 44 ll~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~ 81 (94)
T PF12862_consen 44 LLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLA 81 (94)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 45789999999999999999999887777666654333
No 372
>PHA00738 putative HTH transcription regulator
Probab=29.73 E-value=3.2e+02 Score=22.49 Aligned_cols=72 Identities=13% Similarity=0.011 Sum_probs=48.7
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHH
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKV 409 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l 409 (422)
+.++......+...|++.++++..-|-+.|.-|-..|.|..+-+-..-+..+.+. ...|+.++.-.+...++
T Consensus 18 L~lL~~~e~~~V~eLae~l~lSQptVS~HLKvLreAGLV~srK~Gr~vyY~Ln~~---~~~~~l~~~~~~~~~~~ 89 (108)
T PHA00738 18 LELIAENYILSASLISHTLLLSYTTVLRHLKILNEQGYIELYKEGRTLYAKIREN---SKEIQILNSELEGFKKL 89 (108)
T ss_pred HHHHHHcCCccHHHHHHhhCCCHHHHHHHHHHHHHCCceEEEEECCEEEEEECCC---ccHHHHHhhHHHHHHhh
Confidence 3333333358888999999999999999999999999998765544444444333 33466666544444433
No 373
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=29.70 E-value=7.5e+02 Score=26.78 Aligned_cols=123 Identities=17% Similarity=0.229 Sum_probs=65.0
Q ss_pred HHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHH
Q 014555 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGII 93 (422)
Q Consensus 14 ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l 93 (422)
.+.+..+||.+|++.|-=+=.-...++ . .-...-+.++..+.++|+.|..-+.. . | .+ ..-++
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~~~~~~--~---~l~~~~l~eLvletref~~LLG~i~~-d---G--~r------~~G~i 397 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLFKDPEQ--R---NLFHECLRELVLETREFDLLLGDINP-D---G--SR------TPGLI 397 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS-SCCH--H---HHHHHHHHHHHHHH--HHHHHEEE-T-T---S---E------EE-HH
T ss_pred HHHHhccCHHHHHHHHHHHHHcCCchH--H---HHHHHHHHHHHHccCCHHHHCCCCCC-C---C--cc------cccee
Confidence 456788899999998775544322111 2 22333445566777777776643222 1 1 01 12344
Q ss_pred HH---hhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Q 014555 94 DA---VAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 94 ~~---~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~ 160 (422)
+. +-+..+..+..-+++...-..+.++|+.. .=+.+|.-.|+|+.++++++..+.+.-..
T Consensus 398 ~~~~~Li~~~~~~~~~~~i~~~~A~~~e~~g~~~-------dAi~Ly~La~~~d~vl~lln~~Ls~~l~~ 460 (613)
T PF04097_consen 398 ERRLSLIKFDDDEDFLREIIEQAAREAEERGRFE-------DAILLYHLAEEYDKVLSLLNRLLSQVLSQ 460 (613)
T ss_dssp HHTGGGGT-SSSSHHHHHHHHHHHHHHHHCT-HH-------HHHHHHHHTT-HHHHHHHHHHHHHHHHHC
T ss_pred eccccccCCCCcHHHHHHHHHHHHHHHHHCCCHH-------HHHHHHHHHhhHHHHHHHHHHHHHHHHcC
Confidence 44 00011212344566666666666666432 44556777889999999999998775443
No 374
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=29.49 E-value=5.3e+02 Score=24.99 Aligned_cols=61 Identities=15% Similarity=0.023 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-.++++.+...|.++.+.+.++++... ++.... .+..-++.|+..|+...|...|....+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~----dp~~E~--~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIEL----DPYDEP--AYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhc----CccchH--HHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 557899999999999999888887642 222222 3444577999999999999999887663
No 375
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=29.48 E-value=1.1e+02 Score=20.56 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=24.6
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+...||+.+|++...|...+.++..
T Consensus 16 ~~g~s~~eia~~l~is~~tv~~~~~~~~~ 44 (58)
T smart00421 16 AEGLTNKEIAERLGISEKTVKTHLSNIMR 44 (58)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999887643
No 376
>COG1802 GntR Transcriptional regulators [Transcription]
Probab=29.08 E-value=89 Score=28.86 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
....++.|++.-+..-+.|=++++-..||+.||+|..-|-.-|.++-.+|.|.-.
T Consensus 18 ~~~vy~~Lr~~Il~g~l~pG~~l~e~~La~~~gvSrtPVReAL~rL~~eGlv~~~ 72 (230)
T COG1802 18 ADQVYEELREAILSGELAPGERLSEEELAEELGVSRTPVREALRRLEAEGLVEIE 72 (230)
T ss_pred HHHHHHHHHHHHHhCCCCCCCCccHHHHHHHhCCCCccHHHHHHHHHHCCCeEec
Confidence 3556777777777777889999999999999999999999999999999998766
No 377
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=29.06 E-value=99 Score=28.25 Aligned_cols=43 Identities=9% Similarity=0.105 Sum_probs=36.9
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
+.+.++-.+.++||+.+|+++.-|+.++..+...|.+...++.
T Consensus 171 ~~~g~~g~s~~eIa~~l~iS~~Tv~~~~~~~~~~~~~~~~~~~ 213 (225)
T PRK10046 171 FKEPGVQHTAETVAQALTISRTTARRYLEYCASRHLIIAEIVH 213 (225)
T ss_pred HHcCCCCcCHHHHHHHhCccHHHHHHHHHHHHhCCeEEEEeec
Confidence 3344556789999999999999999999999999999887765
No 378
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=28.68 E-value=2.9e+02 Score=25.23 Aligned_cols=54 Identities=11% Similarity=0.039 Sum_probs=40.6
Q ss_pred hHHHHHHHHhhcCCCCCchHHHHHHHHHHH-HHHHHHHHcccHHHHHHHHHHhch
Q 014555 22 PSDAISMLYRVLDDPSSSSEALRVKELAIT-ELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
.+.|+..+..|.+....++...+...+.++ +.+-.|.+.|.++...+.+..+-+
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 478999999888865554444566666665 456789999999999988877765
No 379
>cd04762 HTH_MerR-trunc Helix-Turn-Helix DNA binding domain of truncated MerR-like proteins. Proteins in this family mostly have a truncated helix-turn-helix (HTH) MerR-like domain. They lack a portion of the C-terminal region, called Wing 2 and the long dimerization helix that is typically present in MerR-like proteins. These truncated domains are found in response regulator receiver (REC) domain proteins (i.e., CheY), cytosine-C5 specific DNA methylases, IS607 transposase-like proteins, and RacA, a bacterial protein that anchors chromosomes to cell poles.
Probab=28.14 E-value=94 Score=20.19 Aligned_cols=37 Identities=14% Similarity=0.125 Sum_probs=25.1
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
++.++|+.+|++..-+-++ +..|.+.+.-. ++|...+
T Consensus 2 s~~e~a~~lgvs~~tl~~~----~~~g~~~~~~~-~~~~~~~ 38 (49)
T cd04762 2 TTKEAAELLGVSPSTLRRW----VKEGKLKAIRT-PGGHRRF 38 (49)
T ss_pred CHHHHHHHHCcCHHHHHHH----HHcCCCCceeC-CCCceec
Confidence 6789999999998887755 44587765422 2344444
No 380
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=28.08 E-value=91 Score=18.34 Aligned_cols=24 Identities=25% Similarity=0.333 Sum_probs=19.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
.+...|...|++++|.+++.++..
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~ 28 (35)
T TIGR00756 5 TLIDGLCKAGRVEEALELFKEMLE 28 (35)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 456678889999999999888754
No 381
>PF01984 dsDNA_bind: Double-stranded DNA-binding domain; InterPro: IPR002836 This protein family is found in archaea and eukaryota. The human TFAR19 (TF-1 cell apoptosis-related protein 19) encodes a protein which shares significant homology to the corresponding proteins of species ranging from yeast to mice. TFAR19 exhibits a ubiquitous expression pattern and its expression is up-regulated in the tumour cells undergoing apoptosis. TFAR19 may play a general role in the apoptotic process []. Also included in this family is a DNA-binding protein from the archaea, Methanobacterium thermoautotrophicum.; GO: 0003677 DNA binding; PDB: 1EIJ_A 2K6B_A 2CRU_A 1YYB_A 2JXN_A 2FH0_A.
Probab=27.77 E-value=47 Score=27.23 Aligned_cols=48 Identities=21% Similarity=0.326 Sum_probs=28.2
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
..|.+++.|=-+=.|.+|+-.--=-...||..|.+|...|.|.++||-
T Consensus 36 ~iL~qiLt~eAreRL~rI~lvkPe~A~~VE~~Liqlaq~G~l~~kI~d 83 (107)
T PF01984_consen 36 AILRQILTPEARERLNRIKLVKPEKARQVENQLIQLAQSGQLRGKIDD 83 (107)
T ss_dssp HHHHTCB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTSSSS-B-H
T ss_pred HHHHHHcCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 344555555444444444322111146899999999999999999873
No 382
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=27.02 E-value=6e+02 Score=24.76 Aligned_cols=141 Identities=15% Similarity=0.060 Sum_probs=87.3
Q ss_pred hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHh
Q 014555 17 KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAV 96 (422)
Q Consensus 17 ~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~ 96 (422)
..+++++.-+..++.-+.+.+++.+ .|- .|+++|...|+++.-..-+..-....+. ++.+--..-.++-+-
T Consensus 133 ~~~~~~~~l~a~Le~~L~~nP~d~e--gW~-----~Lg~~ym~~~~~~~A~~AY~~A~rL~g~--n~~~~~g~aeaL~~~ 203 (287)
T COG4235 133 PAEQEMEALIARLETHLQQNPGDAE--GWD-----LLGRAYMALGRASDALLAYRNALRLAGD--NPEILLGLAEALYYQ 203 (287)
T ss_pred CCcccHHHHHHHHHHHHHhCCCCch--hHH-----HHHHHHHHhcchhHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh
Confidence 3444678888888888887766543 243 5899999999999887777765544442 222222222222222
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLE 173 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~ 173 (422)
. -+.-...--.++++.+.. +-.-+|. .-=||--+++.|+|.+|....+.++..+...++....++-...+
T Consensus 204 a-~~~~ta~a~~ll~~al~~----D~~~ira--l~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~ 273 (287)
T COG4235 204 A-GQQMTAKARALLRQALAL----DPANIRA--LSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIAR 273 (287)
T ss_pred c-CCcccHHHHHHHHHHHhc----CCccHHH--HHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHH
Confidence 1 111111123445554442 1223444 34788889999999999999999998877767777787765443
No 383
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=27.01 E-value=1.5e+02 Score=20.83 Aligned_cols=45 Identities=22% Similarity=0.259 Sum_probs=30.6
Q ss_pred HHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHH
Q 014555 358 DHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISN 405 (422)
Q Consensus 358 ~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~ 405 (422)
..+++.|.++ .|--...+|..++.+.+...++.. ..+.+.+.+++
T Consensus 14 ~~v~~~l~~~--~GV~~v~vd~~~~~v~v~~~~~~~-~~~~i~~~i~~ 58 (62)
T PF00403_consen 14 KKVEKALSKL--PGVKSVKVDLETKTVTVTYDPDKT-SIEKIIEAIEK 58 (62)
T ss_dssp HHHHHHHHTS--TTEEEEEEETTTTEEEEEESTTTS-CHHHHHHHHHH
T ss_pred HHHHHHHhcC--CCCcEEEEECCCCEEEEEEecCCC-CHHHHHHHHHH
Confidence 4566666665 677789999999999998766542 22445555444
No 384
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=26.47 E-value=4.7e+02 Score=24.39 Aligned_cols=49 Identities=8% Similarity=0.177 Sum_probs=39.6
Q ss_pred HHHHHHhhc-ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 331 EQNLCRLIE-PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 331 ~~~l~~i~~-pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
.+-+++.++ |=...|-+++|+.+|+|---+.++|.-|+..|.+.+.|-.
T Consensus 160 l~~i~~~~~~~~~~~Taeela~~~giSRvTaRRYLeyl~~~~~l~a~i~y 209 (224)
T COG4565 160 LQKVREALKEPDQELTAEELAQALGISRVTARRYLEYLVSNGILEAEIHY 209 (224)
T ss_pred HHHHHHHHhCcCCccCHHHHHHHhCccHHHHHHHHHHHHhcCeeeEEeec
Confidence 334444444 5578889999999999999999999999999999876654
No 385
>cd06170 LuxR_C_like C-terminal DNA-binding domain of LuxR-like proteins. This domain contains a helix-turn-helix motif and binds DNA. Proteins belonging to this group are response regulators; some act as transcriptional activators, others as transcriptional repressors. Many are active as homodimers. Many are two domain proteins in which the DNA binding property of the C-terminal DNA binding domain is modulated by modifications of the N-terminal domain. For example in the case of Lux R which participates in the regulation of gene expression in response to fluctuations in cell-population density (quorum-sensing), a signaling molecule, the pheromone Acyl HSL (N-acyl derivatives of homoserine lactone), binds to the N-terminal domain and leads to LuxR dimerization. For others phophorylation of the N-terminal domain leads to multimerization, for example Escherichia coli NarL and Sinorhizobium melilot FixJ. NarL controls gene expression of many respiratory-related operons when environmental
Probab=26.42 E-value=1.2e+02 Score=20.43 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=24.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+++.-++..+.++..
T Consensus 13 ~~~~s~~eia~~l~~s~~tv~~~~~~~~~ 41 (57)
T cd06170 13 AEGKTNKEIADILGISEKTVKTHLRNIMR 41 (57)
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 35679999999999999999999877643
No 386
>PRK04984 fatty acid metabolism regulator; Provisional
Probab=26.20 E-value=1.8e+02 Score=26.80 Aligned_cols=61 Identities=15% Similarity=0.120 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 324 SLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..++.|++.-+..-..|=.++ +-..||+.||+|-.-|-.-|..|..+|.|.- -+..|+++.
T Consensus 11 ~~~~~l~~~I~~g~l~pG~~LPsE~eLae~~gVSRt~VReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T PRK04984 11 FAEEYIIESIWNNRFPPGSILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_pred HHHHHHHHHHHcCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCeeEeC
Confidence 455555555555666787899 7889999999999999999999999999984 455576664
No 387
>PF13041 PPR_2: PPR repeat family
Probab=25.68 E-value=99 Score=20.77 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKE 156 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e 156 (422)
-+...|.+.|++++|.++++++.+.
T Consensus 8 ~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 8 TLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 4667788999999999999998754
No 388
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=25.55 E-value=56 Score=36.81 Aligned_cols=36 Identities=11% Similarity=0.297 Sum_probs=28.7
Q ss_pred hHHHHhCCCh------HHHHHHHHhhhhcCCcee-eeecCCCE
Q 014555 348 HIAELIELPI------DHVEKKLSQMILDKKFAG-TLDQGVGC 383 (422)
Q Consensus 348 ~la~~l~l~~------~evE~~l~~mI~~g~i~g-kIDq~~g~ 383 (422)
.|..+.|+-+ +++=.++.+++.+|.++| +||+++|.
T Consensus 263 dIn~L~~lRvE~~~VF~~tH~li~~L~~~G~vdGlRIDHiDGL 305 (879)
T PRK14511 263 DVNTLAAVRVEDPEVFEETHALILRLLREGLVDGLRIDHPDGL 305 (879)
T ss_pred cchhheeeecCCHHHHHHHHHHHHHHHHCCCCCeEEeCCCccc
Confidence 4556666532 566789999999999999 99999994
No 389
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=25.46 E-value=1.1e+03 Score=27.13 Aligned_cols=194 Identities=14% Similarity=0.094 Sum_probs=0.0
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhh
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVA 97 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~ 97 (422)
...++++|++...+-++..+ .....++.++-++++.++++...-. .+...++.-++-.+..-+.+++..+.
T Consensus 43 ~~~~~deai~i~~~~l~~~P-------~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~ 113 (906)
T PRK14720 43 SENLTDEAKDICEEHLKEHK-------KSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYG 113 (906)
T ss_pred hcCCHHHHHHHHHHHHHhCC-------cceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHHHhhh
Q ss_pred cCC-------------CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 98 KIP-------------GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 98 ~~~-------------~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
... +....-++.++.++++-.++ .-+-..+|..|... +.++|.+++...+..
T Consensus 114 ~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n------~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-------- 178 (906)
T PRK14720 114 ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDN------PEIVKKLATSYEEE-DKEKAITYLKKAIYR-------- 178 (906)
T ss_pred hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCC-
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED- 243 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~- 243 (422)
+...+.+..+..++.+--.. +|.-.-.+...--++.-+.+ +..+....+..++.|....+
T Consensus 179 ------------~i~~kq~~~~~e~W~k~~~~------~~~d~d~f~~i~~ki~~~~~-~~~~~~~~~~l~~~y~~~~~~ 239 (906)
T PRK14720 179 ------------FIKKKQYVGIEEIWSKLVHY------NSDDFDFFLRIERKVLGHRE-FTRLVGLLEDLYEPYKALEDW 239 (906)
T ss_pred ------------HHhhhcchHHHHHHHHHHhc------CcccchHHHHHHHHHHhhhc-cchhHHHHHHHHHHHhhhhhh
Q ss_pred hhHHHHHHHHH
Q 014555 244 PRAVFSLKYML 254 (422)
Q Consensus 244 ~~~~~~lky~v 254 (422)
.+.+.+||.++
T Consensus 240 ~~~i~iLK~iL 250 (906)
T PRK14720 240 DEVIYILKKIL 250 (906)
T ss_pred hHHHHHHHHHH
No 390
>PF09743 DUF2042: Uncharacterized conserved protein (DUF2042); InterPro: IPR018611 The ubiquitin fold modifier 1 (Ufm1) is the most recently discovered ubiquitin-like modifier whose conjugation (ufmylation) system is conserved in multicellular organisms. Ufm1 is known to covalently attach with cellular protein(s) via a specific E1-activating enzyme (Uba5), an E2-conjugating enzyme (Ufc1), and a E3-ligating enzyme []. This entry represents E3 UFM1-protein ligase 1.
Probab=25.39 E-value=1.8e+02 Score=28.03 Aligned_cols=51 Identities=10% Similarity=0.216 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 326 YDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 326 ~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
.+..+.-.+..+.+| ++++.+.+..+++..-+-..+-++|..|.+.|+|--
T Consensus 178 ~ka~iRG~l~a~T~P---t~l~~l~~~~~~~~~l~~~il~~Li~~~~l~G~i~G 228 (272)
T PF09743_consen 178 QKARIRGALSAITRP---TPLSSLLKRYGFEEKLFQSILEELIKSGELPGSIVG 228 (272)
T ss_pred HHHHHHHHHhcCccc---eEHHHHHHHhCCcHHHHHHHHHHHHhcCcceEEEEC
Confidence 334444566666666 788999999999999999999999999999999876
No 391
>PRK09464 pdhR transcriptional regulator PdhR; Reviewed
Probab=25.13 E-value=1.9e+02 Score=27.05 Aligned_cols=63 Identities=11% Similarity=0.126 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+.+++.|++.-+..-++|=.++ +-..||+.||+|..-|-.-|..|-.+|.|.-+ +..|+.+..
T Consensus 13 ~~v~~~l~~~I~~g~l~pG~~LpsE~eLa~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~~ 76 (254)
T PRK09464 13 DVIEQQLEFLILEGTLRPGEKLPPERELAKQFDVSRPSLREAIQRLEAKGLLLRR--QGGGTFVQS 76 (254)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--cCceeEEec
Confidence 3455566666666666788899 89999999999999999999999999999854 455665543
No 392
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=25.12 E-value=5.5e+02 Score=24.72 Aligned_cols=38 Identities=26% Similarity=0.178 Sum_probs=27.0
Q ss_pred HHHHhchhhcHHHHHHHHHHHhhhhhcc------CChhHHHHHH
Q 014555 214 SGILHAEEKDYKTAYSYFFEAFEAFNAL------EDPRAVFSLK 251 (422)
Q Consensus 214 ~g~~~~~~~dy~~A~~~f~ea~~~~~~~------~~~~~~~~lk 251 (422)
.|-=....++|++|...|+||.-..... ++|+|++.-+
T Consensus 184 ~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk 227 (329)
T KOG0545|consen 184 EGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDK 227 (329)
T ss_pred hhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 3444447899999999999997655542 6678876443
No 393
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.72 E-value=6.2e+02 Score=24.18 Aligned_cols=170 Identities=12% Similarity=0.118 Sum_probs=89.3
Q ss_pred hHHHHHHHHhhcCCCC-CchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 22 PSDAISMLYRVLDDPS-SSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
.++|.+.|..--..-+ ..++ ..--.+..+.++++.+.|.-++....+..--+-+..+....+...+...++.+..+.
T Consensus 30 ~eeAadl~~~Aan~yklaK~w--~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~G 107 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNW--SAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMG 107 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhh
Confidence 4677777665322111 0111 122346667777777777655555555444433322323333333333333322211
Q ss_pred --------------------CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Q 014555 101 --------------------GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 101 --------------------~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~ 160 (422)
...+.-+.-++..-+|-..+.-.-.-....++.|.+--+.|+|.+|.+++.++... +
T Consensus 108 rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~---s 184 (288)
T KOG1586|consen 108 RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARS---S 184 (288)
T ss_pred HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---h
Confidence 10112244455555554433222221122447888888899999999999988643 3
Q ss_pred ccc---hhHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHh
Q 014555 161 DDK---LLLVDIDLLESKLHFSL-RNLPKAKAALTAARTA 196 (422)
Q Consensus 161 ~~~---~~~~e~~l~~~~~~~~~-~n~~kak~~l~~a~~~ 196 (422)
++. ..-+-=|+..+-+|+.. .|..-++..+++-...
T Consensus 185 ~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 185 LDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred ccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 332 22334466677788776 7888888777766554
No 394
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=24.59 E-value=3.1e+02 Score=28.91 Aligned_cols=57 Identities=26% Similarity=0.321 Sum_probs=37.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALT 191 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~ 191 (422)
.+||...-+.|...||.+++.+++++....+ .+-+.-.| +..++..+.+..+++++.
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~--~l~IrenL--ie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLD--NLNIRENL--IEALLELQAYADVQALLA 319 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccc--hhhHHHHH--HHHHHhcCCHHHHHHHHH
Confidence 4899999999999999999999998754221 12222222 335556666666655544
No 395
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=24.21 E-value=4.9e+02 Score=22.82 Aligned_cols=56 Identities=20% Similarity=0.172 Sum_probs=41.5
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
....+...+...+..++...+.+.- +. ..++.+.|.+|+..|+|.+|.+.|.+..+
T Consensus 17 ~~~aL~~~d~~D~e~lLdALrvLrP------~~-~e~d~~dg~l~i~rg~w~eA~rvlr~l~~ 72 (153)
T TIGR02561 17 LMYALRSADPYDAQAMLDALRVLRP------NL-KELDMFDGWLLIARGNYDEAARILRELLS 72 (153)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCC------Cc-cccchhHHHHHHHcCCHHHHHHHHHhhhc
Confidence 4455567788888777776665532 22 45678899999999999999999988754
No 396
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=24.13 E-value=5.7e+02 Score=23.58 Aligned_cols=139 Identities=13% Similarity=0.156 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh-----cchh
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRA-----EKRT 123 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~-----~~r~ 123 (422)
+...=++.|.+.|||..|..++..++.-.. .-+...+.--.+-+.+.+.+.. ..-+..|+..-.++++ -.|+
T Consensus 53 ~~~~eie~Ckek~DW~klg~ly~nv~~gce--~~~dlq~~~~~va~~Ltkd~Kd-k~~vPFceFAetV~k~~q~~e~dK~ 129 (233)
T PF14669_consen 53 SAVVEIEHCKEKGDWTKLGNLYINVKMGCE--KFADLQRFCACVAEALTKDSKD-KPGVPFCEFAETVCKDPQNDEVDKT 129 (233)
T ss_pred HHHHHHHHHhhhccHHHHhhHHhhHHhhcC--CHHHHHHHHHHHHHHHHhcccc-cCCCCHHHHHHHHhcCCccchhhhh
Confidence 444556899999999999999987764221 1223333323333333322211 1113444444444431 2578
Q ss_pred HH-hhHHHHHHHHHHHhcccHHHHHHHHHHHHHH------Hhhhc------cchhHHHHHHHHHHHHHhhCCHHHHHHHH
Q 014555 124 FL-RQRVEARLAALLMESREYTEALTLLTSLVKE------VRRLD------DKLLLVDIDLLESKLHFSLRNLPKAKAAL 190 (422)
Q Consensus 124 ~l-r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e------~~~~~------~~~~~~e~~l~~~~~~~~~~n~~kak~~l 190 (422)
+| |. -+.+.-.|-...+|.+..++|..+..- +++.- ++-..+.+- +.+++..|+++.|--.+
T Consensus 130 ~LGRi--GiS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~A---aEiFL~sgsidGA~~vL 204 (233)
T PF14669_consen 130 LLGRI--GISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIA---AEIFLKSGSIDGALWVL 204 (233)
T ss_pred hhhHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHH---HHHHHHcCCchHHHHHH
Confidence 88 66 446666677777899888888776321 23321 233445443 45788999999998777
Q ss_pred HHHHH
Q 014555 191 TAART 195 (422)
Q Consensus 191 ~~a~~ 195 (422)
....=
T Consensus 205 reseW 209 (233)
T PF14669_consen 205 RESEW 209 (233)
T ss_pred hccce
Confidence 75543
No 397
>PRK09334 30S ribosomal protein S25e; Provisional
Probab=24.06 E-value=2.1e+02 Score=22.46 Aligned_cols=37 Identities=14% Similarity=-0.015 Sum_probs=34.4
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
.|+-||...+|+.+++...-+...|..+-..|.|.-.
T Consensus 38 ~~K~ITps~lserlkI~~SlAr~~Lr~L~~kG~Ik~V 74 (86)
T PRK09334 38 KEKIVTPYTLASKYGIKISVAKKVLRELEKRGVLVLY 74 (86)
T ss_pred cCcEEcHHHHHHHhcchHHHHHHHHHHHHHCCCEEEE
Confidence 4999999999999999999999999999999998765
No 398
>PF03297 Ribosomal_S25: S25 ribosomal protein; InterPro: IPR004977 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The S25 ribosomal protein is a component of the 40S ribosomal subunit.; PDB: 2XZM_8 2XZN_8 3O30_Q 3U5G_Z 3IZB_V 3U5C_Z 3O2Z_Q 3IZ6_V.
Probab=23.91 E-value=3.1e+02 Score=22.37 Aligned_cols=48 Identities=6% Similarity=0.021 Sum_probs=39.6
Q ss_pred hcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 338 IEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 338 ~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
+..|.-||...||+.+++...-+...|-.|...|.|.-..-.....|.
T Consensus 54 V~~~K~ITp~~lserlkI~~SlAr~~Lr~L~~kG~Ik~V~k~~~~~IY 101 (105)
T PF03297_consen 54 VPKMKLITPSVLSERLKINGSLARKALRELESKGLIKPVSKHHRQRIY 101 (105)
T ss_dssp CTTSSCECHHHHHHHHCCSCHHHHHHHHHHHHCCSSEEEECCTTCEEE
T ss_pred hccCcEeeHHHHHHhHhhHHHHHHHHHHHHHHCCCEEEEeccCCeEEE
Confidence 345899999999999999999999999999999999876444444443
No 399
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=23.86 E-value=3e+02 Score=27.55 Aligned_cols=88 Identities=11% Similarity=0.032 Sum_probs=58.7
Q ss_pred hcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHh
Q 014555 139 ESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILH 218 (422)
Q Consensus 139 ~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~ 218 (422)
+.|++..-..-|+++.-. ...++.....+-|=++-.-|+..+.|..|...|+.+.+. +.. +|.+.+.++---+-.+
T Consensus 54 ~~gd~~~~~~~LqslK~d-a~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~-D~dlnavLY~NRAAa~ 129 (390)
T KOG0551|consen 54 SEGDPNPDNVCLQSLKAD-AEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCA-DPDLNAVLYTNRAAAQ 129 (390)
T ss_pred CCCCCCccHHHHHHhhhc-cccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCC-CccHHHHHHhhHHHHH
Confidence 355554444444554211 011345567777777888899999999999999987654 344 7899999986666666
Q ss_pred chhhcHHHHHHH
Q 014555 219 AEEKDYKTAYSY 230 (422)
Q Consensus 219 ~~~~dy~~A~~~ 230 (422)
..-++|..|...
T Consensus 130 ~~l~NyRs~l~D 141 (390)
T KOG0551|consen 130 LYLGNYRSALND 141 (390)
T ss_pred HHHHHHHHHHHH
Confidence 666777776643
No 400
>COG4367 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.85 E-value=72 Score=25.10 Aligned_cols=25 Identities=20% Similarity=0.158 Sum_probs=22.3
Q ss_pred cccccchhHHHHhCCChHHHHHHHH
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLS 365 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~ 365 (422)
-+++|.+.||..|++++..+|+.+.
T Consensus 21 l~~LS~~~iA~~Ln~t~~~lekil~ 45 (97)
T COG4367 21 LCPLSDEEIATALNWTEVKLEKILQ 45 (97)
T ss_pred hccccHHHHHHHhCCCHHHHHHHHH
Confidence 4789999999999999999998873
No 401
>PF01710 HTH_Tnp_IS630: Transposase; InterPro: IPR002622 Transposase proteins are necessary for efficient DNA transposition. This entry includes insertion sequences from Synechocystis sp. (strain PCC 6803) three of which are characterised as homologous to bacterial IS5- and IS4- and to several members of the IS630-Tc1-mariner superfamily []. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=23.74 E-value=1e+02 Score=25.45 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=31.4
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhh
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQM 367 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~m 367 (422)
...|..+++-+..+++.+||+.||++..-+-..|-+|
T Consensus 59 ~~~L~~~v~~~pd~tl~Ela~~l~Vs~~ti~~~Lkrl 95 (119)
T PF01710_consen 59 RDELKALVEENPDATLRELAERLGVSPSTIWRALKRL 95 (119)
T ss_pred HHHHHHHHHHCCCcCHHHHHHHcCCCHHHHHHHHHHc
Confidence 4557888888999999999999999998888777664
No 402
>PRK11753 DNA-binding transcriptional dual regulator Crp; Provisional
Probab=23.12 E-value=1.5e+02 Score=26.51 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=34.1
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
+++-.+||+.+|++...+-+.+.+|-.+|.|. ...+.|.+.+
T Consensus 168 ~~t~~~lA~~lG~tr~tvsR~l~~l~~~gii~----~~~~~i~i~~ 209 (211)
T PRK11753 168 KITRQEIGRIVGCSREMVGRVLKMLEDQGLIS----AHGKTIVVYG 209 (211)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEec
Confidence 67779999999999999999999999998774 2345566554
No 403
>PRK15090 DNA-binding transcriptional regulator KdgR; Provisional
Probab=22.86 E-value=1.4e+02 Score=28.13 Aligned_cols=42 Identities=12% Similarity=0.107 Sum_probs=34.1
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
|+.++.....+++++||+.+|+|..-+-++|..|...|-+.-
T Consensus 19 IL~~l~~~~~l~l~eia~~lgl~kstv~Rll~tL~~~G~l~~ 60 (257)
T PRK15090 19 ILQALGEEREIGITELSQRVMMSKSTVYRFLQTMKTLGYVAQ 60 (257)
T ss_pred HHHHhhcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 333333345699999999999999999999999999998753
No 404
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=22.65 E-value=3e+02 Score=29.15 Aligned_cols=51 Identities=16% Similarity=0.025 Sum_probs=28.3
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
+...|++..|...+++|..+. |. +.-+...|..+...|++.+|...|..|+
T Consensus 430 ~~~~g~~~~A~~~l~rAl~L~------ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 430 ALVKGKTDEAYQAINKAIDLE------MS--WLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHhcCCHHHHHHHHHHHHHcC------CC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 334566666666666654442 22 2234455666666666666666666664
No 405
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.49 E-value=8.3e+02 Score=24.82 Aligned_cols=133 Identities=19% Similarity=0.156 Sum_probs=71.8
Q ss_pred chHHHHHh-hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHH--
Q 014555 10 TDSIAQAK-EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTA-- 86 (422)
Q Consensus 10 ~~~~ak~~-~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~-- 86 (422)
+.|+-..+ ...|...||..|.=-...++..++ ..-.-|+-.++..|||+...+.++.+...-. +.+...
T Consensus 25 K~P~Ledfls~rDytGAislLefk~~~~~EEE~------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~--~~~el~vn 96 (557)
T KOG3785|consen 25 KMPELEDFLSNRDYTGAISLLEFKLNLDREEED------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDD--APAELGVN 96 (557)
T ss_pred cCchHHHHHhcccchhHHHHHHHhhccchhhhH------HHHHHHHHHHHhhccHHHHHHHHHHHhccCC--CCcccchh
Confidence 34444443 334678888876654433332221 1223467788899999999988888775221 111110
Q ss_pred ----H----H---HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH---------hhHHHHHHHHHHHhcccHHHH
Q 014555 87 ----K----I---VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL---------RQRVEARLAALLMESREYTEA 146 (422)
Q Consensus 87 ----k----~---v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l---------r~~l~~~La~~~~~~g~~~~A 146 (422)
+ + -+++.. +.|.+ +++.+|.-.+--....|+|+.- -. ++.||.+......|++|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~---ka~k~-pL~~RLlfhlahklndEk~~~~fh~~LqD~~Ed--qLSLAsvhYmR~HYQeA 170 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAE---KAPKT-PLCIRLLFHLAHKLNDEKRILTFHSSLQDTLED--QLSLASVHYMRMHYQEA 170 (557)
T ss_pred HHHHHHHHHHHHHHHHHHh---hCCCC-hHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHH--HHhHHHHHHHHHHHHHH
Confidence 0 0 112222 23443 4444444333222222222110 12 45888888888899999
Q ss_pred HHHHHHHHHH
Q 014555 147 LTLLTSLVKE 156 (422)
Q Consensus 147 ~~~l~~l~~e 156 (422)
.+++..++..
T Consensus 171 IdvYkrvL~d 180 (557)
T KOG3785|consen 171 IDVYKRVLQD 180 (557)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 406
>PRK10421 DNA-binding transcriptional repressor LldR; Provisional
Probab=22.45 E-value=2.4e+02 Score=26.38 Aligned_cols=63 Identities=11% Similarity=0.189 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+.+++.|+..-+..-+.|=.++ +-.+||+.||+|..-|-.-|..|-..|.|.-+ +..|+.+..
T Consensus 5 ~~v~~~L~~~I~~g~l~pG~~LpsE~eLae~~gVSRtpVREAL~~Le~~GlV~~~--~~~G~~V~~ 68 (253)
T PRK10421 5 DEVADRVRALIEEKNLEAGMKLPAERQLAMQLGVSRNSLREALAKLVSEGVLLSR--RGGGTFIRW 68 (253)
T ss_pred HHHHHHHHHHHHcCCCCCCCcCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe--CCCeEEEec
Confidence 3455556665555666788999 68999999999999999999999999999844 455665543
No 407
>PRK12514 RNA polymerase sigma factor; Provisional
Probab=22.44 E-value=1.5e+02 Score=25.86 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
+..|-..-++-.++.+ +.-.+.++||+.+|+|+.-|...+.++.
T Consensus 127 l~~L~~~~r~i~~l~~---~~g~s~~eIA~~lgis~~tV~~~l~Rar 170 (179)
T PRK12514 127 LEELEKDRAAAVRRAY---LEGLSYKELAERHDVPLNTMRTWLRRSL 170 (179)
T ss_pred HHhCCHHHHHHHHHHH---HcCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 3444443333333333 5667899999999999999999888764
No 408
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=22.43 E-value=1.1e+03 Score=26.37 Aligned_cols=208 Identities=19% Similarity=0.181 Sum_probs=105.7
Q ss_pred cchHHHHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 9 TTDSIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 9 ~~~~~ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
.+++-.-++.+.|.+.|..-|..++..+. .+ .-| ..+.++-.+.|+.--....+..+ ++|.|+.---=
T Consensus 447 ~~iefgaaid~~df~ra~afles~~~~~d--a~-amw-----~~laelale~~nl~iaercfaai----~dvak~r~lhd 514 (1636)
T KOG3616|consen 447 GLIEFGAAIDDGDFDRATAFLESLEMGPD--AE-AMW-----IRLAELALEAGNLFIAERCFAAI----GDVAKARFLHD 514 (1636)
T ss_pred cceecccccccCchHHHHHHHHhhccCcc--HH-HHH-----HHHHHHHHHhccchHHHHHHHHH----HHHHHHHHHHH
Confidence 45666666777788888877766655432 11 223 34555666666543333333222 33444433333
Q ss_pred HHHHHHHhhcCC---CChhHHH----HHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHH----HHHH
Q 014555 89 VRGIIDAVAKIP---GTSELQI----ALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSL----VKEV 157 (422)
Q Consensus 89 v~~~l~~~~~~~---~~~~~~~----~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l----~~e~ 157 (422)
+..|-|..+-.- ++...++ .+...-... ..++||-++-+-.-.-+|-+..+|++|+.+-... ++.+
T Consensus 515 ~~eiadeas~~~ggdgt~fykvra~lail~kkfk~---ae~ifleqn~te~aigmy~~lhkwde~i~lae~~~~p~~ekl 591 (1636)
T KOG3616|consen 515 ILEIADEASIEIGGDGTDFYKVRAMLAILEKKFKE---AEMIFLEQNATEEAIGMYQELHKWDEAIALAEAKGHPALEKL 591 (1636)
T ss_pred HHHHHHHHhHhhCCCCchHHHHHHHHHHHHhhhhH---HHHHHHhcccHHHHHHHHHHHHhHHHHHHHHHhcCChHHHHH
Confidence 344444333211 1122232 222222222 2478886665555566677777788877644322 2222
Q ss_pred hhh-----cc-----c--hhHHH--HHHHHHHHHHhhCCHHHH-HHHHHHHHH-----hhccCCCCchhhHHHHHHHHHH
Q 014555 158 RRL-----DD-----K--LLLVD--IDLLESKLHFSLRNLPKA-KAALTAART-----AANAIYVPPAQQGTIDLQSGIL 217 (422)
Q Consensus 158 ~~~-----~~-----~--~~~~e--~~l~~~~~~~~~~n~~ka-k~~l~~a~~-----~~~~i~~~~~i~a~i~~~~g~~ 217 (422)
+.+ +| + .++.. =-|.-+++|+..|-..+| +..++...- +..-|. ...+.+.++.-.|.+
T Consensus 592 k~sy~q~l~dt~qd~ka~elk~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia-~alik~elydkagdl 670 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELKESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIA-AALIKGELYDKAGDL 670 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhccccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHH-HHHHhhHHHHhhhhH
Confidence 221 11 1 00000 012335677777766554 333333221 111233 446678888889999
Q ss_pred hchhhcHHHHHHHHH
Q 014555 218 HAEEKDYKTAYSYFF 232 (422)
Q Consensus 218 ~~~~~dy~~A~~~f~ 232 (422)
+-.-.||..|..+|.
T Consensus 671 feki~d~dkale~fk 685 (1636)
T KOG3616|consen 671 FEKIHDFDKALECFK 685 (1636)
T ss_pred HHHhhCHHHHHHHHH
Confidence 988999999998886
No 409
>PF13959 DUF4217: Domain of unknown function (DUF4217)
Probab=22.04 E-value=2.6e+02 Score=20.43 Aligned_cols=30 Identities=13% Similarity=0.186 Sum_probs=21.2
Q ss_pred HHHHHHHHHHhhcccccccchhHHHHhCCC
Q 014555 327 DTLLEQNLCRLIEPYSRVEIAHIAELIELP 356 (422)
Q Consensus 327 ~~i~~~~l~~i~~pYs~I~l~~la~~l~l~ 356 (422)
+....|.-.+.++....+.+.++|..|||.
T Consensus 29 raY~~~~~~k~iF~~~~L~l~~~A~sfGL~ 58 (65)
T PF13959_consen 29 RAYASHKELKDIFNVKKLDLGHLAKSFGLL 58 (65)
T ss_pred HHHHHHhhhhhhCCcccCCHHHHHHHcCCC
Confidence 333344233455667999999999999985
No 410
>PHA02591 hypothetical protein; Provisional
Probab=21.92 E-value=80 Score=24.31 Aligned_cols=24 Identities=21% Similarity=0.414 Sum_probs=20.2
Q ss_pred cccchhHHHHhCCChHHHHHHHHh
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQ 366 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~ 366 (422)
-.|.+.||+.||++.+.|-+++..
T Consensus 59 GlSqeqIA~~LGVsqetVrKYL~~ 82 (83)
T PHA02591 59 GFTVEKIASLLGVSVRKVRRYLES 82 (83)
T ss_pred CCCHHHHHHHhCCCHHHHHHHHhc
Confidence 457889999999999999887754
No 411
>cd04761 HTH_MerR-SF Helix-Turn-Helix DNA binding domain of transcription regulators from the MerR superfamily. Helix-turn-helix (HTH) transcription regulator MerR superfamily, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.78 E-value=1.5e+02 Score=19.58 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=25.7
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+++++|+.+|+++.-+..+ +..|.+.+.-+.. |.-.+
T Consensus 2 ~~~e~a~~~gv~~~tlr~~----~~~g~l~~~~~~~-~~~~y 38 (49)
T cd04761 2 TIGELAKLTGVSPSTLRYY----ERIGLLSPARTEG-GYRLY 38 (49)
T ss_pred cHHHHHHHHCcCHHHHHHH----HHCCCCCCCcCCC-CCEEe
Confidence 6789999999999988866 5667776533332 44444
No 412
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=21.65 E-value=5.4e+02 Score=22.33 Aligned_cols=110 Identities=20% Similarity=0.072 Sum_probs=71.0
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGI 216 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~ 216 (422)
+-+.|+.+.|++....-+.-+.+ ....|=-.++.+-..|+..+|-.-+++|..++..-. +.--.-..+.|.
T Consensus 53 laE~g~Ld~AlE~F~qal~l~P~------raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t---rtacqa~vQRg~ 123 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALCLAPE------RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT---RTACQAFVQRGL 123 (175)
T ss_pred HHhccchHHHHHHHHHHHHhccc------chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc---hHHHHHHHHHHH
Confidence 44567999999888776543321 223444567778888999999888888877765321 222234556788
Q ss_pred HhchhhcHHHHHHHHHHHhhhhhccCChhHHHHH----HHHHHHHHH
Q 014555 217 LHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSL----KYMLLCKIM 259 (422)
Q Consensus 217 ~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~l----ky~vL~~lL 259 (422)
+|-..++-..|...|-.+- ..|++.+..-| .|..+|.=|
T Consensus 124 lyRl~g~dd~AR~DFe~AA----~LGS~FAr~QLV~lNPYAAlCN~M 166 (175)
T KOG4555|consen 124 LYRLLGNDDAARADFEAAA----QLGSKFAREQLVELNPYAALCNQM 166 (175)
T ss_pred HHHHhCchHHHHHhHHHHH----HhCCHHHHHHHHhcChHHHHHHHH
Confidence 8877777777777776553 36776443322 388888654
No 413
>PF06971 Put_DNA-bind_N: Putative DNA-binding protein N-terminus; InterPro: IPR009718 This entry represents the C terminus (approximately 30 residues) of a number of Rex proteins. These are redox-sensing repressors that appear to be widespread among Gram-positive bacteria []. They modulate transcription in response to changes in cellular NADH/NAD(+) redox state. Rex is predicted to include a pyridine nucleotide-binding domain (Rossmann fold), and residues that might play key structural and nucleotide binding roles are highly conserved.; GO: 0045892 negative regulation of transcription, DNA-dependent, 0051775 response to redox state, 0005737 cytoplasm; PDB: 3IL2_B 3IKT_A 3IKV_B 1XCB_F 2DT5_A 2VT3_A 2VT2_A 3KEO_B 3KET_A 3KEQ_A ....
Probab=21.55 E-value=93 Score=21.76 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=19.6
Q ss_pred cccccchhHHHHhCCChHHHHHHHH
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLS 365 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~ 365 (422)
..+|+=..||+.+|+++..|-+-++
T Consensus 26 ~~~vSS~~La~~~gi~~~qVRKDlS 50 (50)
T PF06971_consen 26 VERVSSQELAEALGITPAQVRKDLS 50 (50)
T ss_dssp -SEE-HHHHHHHHTS-HHHHHHHHH
T ss_pred CeeECHHHHHHHHCCCHHHhcccCC
Confidence 5789999999999999999987664
No 414
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.13 E-value=7.8e+02 Score=24.00 Aligned_cols=87 Identities=15% Similarity=0.204 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHH
Q 014555 105 LQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLP 184 (422)
Q Consensus 105 ~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~ 184 (422)
+-+++++.+|+.- .+. +.-|..+|..+-.+.||...|-...+++-++..+.+.....+-+.-.-.-+|+..+|+.
T Consensus 195 iS~d~~~~vi~~~-~e~----~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 195 LSVDAYHSVIKYY-PEQ----EPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred hhHHHHHHHHHhC-Ccc----cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 3466677776632 122 23346699999999999999998888888777777776667776666667888889998
Q ss_pred HHHHHHHHHHHh
Q 014555 185 KAKAALTAARTA 196 (422)
Q Consensus 185 kak~~l~~a~~~ 196 (422)
.|-..++++-..
T Consensus 270 ~a~r~~~~i~~~ 281 (366)
T KOG2796|consen 270 EAHRFFTEILRM 281 (366)
T ss_pred HHHHHHhhcccc
Confidence 887777765443
No 415
>TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS. A sigma factor is a DNA-binding protein protein that binds to the DNA-directed RNA polymerase core to produce the holoenzyme capable of initiating transcription at specific sites. Different sigma factors act in vegetative growth, heat shock, extracytoplasmic functions (ECF), etc. This model represents the clade of sigma factors called RpoS (also called sigma-38, KatF, etc.), found only in Proteobacteria. This sigma factor is induced in stationary phase (in response to the stress of nutrient limitation) and becomes the second prinicipal sigma factor at that time. RpoS is a member of the larger Sigma-70 subfamily (TIGR02937) and most closely related to RpoD (TIGR02393).
Probab=21.12 E-value=1.5e+02 Score=28.46 Aligned_cols=31 Identities=13% Similarity=0.250 Sum_probs=26.9
Q ss_pred hcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 338 IEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 338 ~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
+..|.-.|+.+||+.+|+|+.-|...+.+.+
T Consensus 237 L~~~e~~s~~EIA~~Lgis~~tVk~~l~rAl 267 (285)
T TIGR02394 237 LLGYEPATLEEVAAEVGLTRERVRQIQVEAL 267 (285)
T ss_pred CCCCCCccHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3457889999999999999999999988765
No 416
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.11 E-value=2.5e+02 Score=26.95 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=48.9
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK 84 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~ 84 (422)
...+.+.|...|..+.+.-... .|.-.++..++......|+.+....++..+-+.++.-+.++
T Consensus 190 ~qg~y~~Aa~~f~~~~k~~P~s----~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 190 AQGDYEDAAYIFARVVKDYPKS----PKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred hcccchHHHHHHHHHHHhCCCC----CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 4557899999999999864322 24456889999999999999999999999998766443333
No 417
>PRK13918 CRP/FNR family transcriptional regulator; Provisional
Probab=21.10 E-value=1.3e+02 Score=26.78 Aligned_cols=43 Identities=12% Similarity=0.163 Sum_probs=35.8
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.++-.+||..+|++.+.|-+.+.+|-.+|.|. ...|.|.+.+.
T Consensus 149 ~~t~~~iA~~lG~tretvsR~l~~l~~~g~I~----~~~~~i~I~d~ 191 (202)
T PRK13918 149 YATHDELAAAVGSVRETVTKVIGELSREGYIR----SGYGKIQLLDL 191 (202)
T ss_pred cCCHHHHHHHhCccHHHHHHHHHHHHHCCCEE----cCCCEEEEECH
Confidence 56788999999999999999999999988774 45567777654
No 418
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=20.96 E-value=1.2e+03 Score=27.13 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred cchHHHHH-hhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHccc----------------------HHH
Q 014555 9 TTDSIAQA-KEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENR----------------------AQD 65 (422)
Q Consensus 9 ~~~~~ak~-~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~ 65 (422)
+.+.+||. +...+.++||+....+++.++++ .-+-.-|+.-+.+.|. |.+
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdN-------YnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkG 76 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDN-------YNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKG 76 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCc-------chhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHH
Q ss_pred HHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHH----------HHhcchhHH----------
Q 014555 66 LCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQW----------TRAEKRTFL---------- 125 (422)
Q Consensus 66 l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~----------~~~~~r~~l---------- 125 (422)
|-.++.. +..-......++.-++.++.+. ..+...-..+|+.+-.- +++.+++..
T Consensus 77 L~nLye~---~~dIl~ld~~~~~yq~~~l~le--~q~~nk~~~lcKk~~d~~~~fk~hll~a~eigei~~trq~~se~N~ 151 (1238)
T KOG1127|consen 77 LGNLYER---YNDILDLDRAAKCYQRAVLILE--NQSKNKGEALCKKFDDQYYQFKKHLLVAKEIGEIAVTRQDASEKNP 151 (1238)
T ss_pred HHHHHHc---cchhhhhhHhHHHHHHHHHhhh--hhhhhHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHhchHhhhhhCH
Q ss_pred -hhHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 014555 126 -RQRVEARLAALLMESREYTEALTLLTSLV 154 (422)
Q Consensus 126 -r~~l~~~La~~~~~~g~~~~A~~~l~~l~ 154 (422)
+.++-.+|..+......++.+-+..+..+
T Consensus 152 ~k~~a~~rl~Qi~l~~~~wei~k~S~q~~l 181 (1238)
T KOG1127|consen 152 KKFWAFCRLGQIQLHQKKWEIAKQSLQHAL 181 (1238)
T ss_pred HHHHhhCchHHHHhhhhhHHHHhcCHHHHH
No 419
>PLN03083 E3 UFM1-protein ligase 1 homolog; Provisional
Probab=20.87 E-value=3.6e+02 Score=30.21 Aligned_cols=49 Identities=18% Similarity=0.251 Sum_probs=39.0
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
-..++--..|++.++|+.+++|.+.+-..|..- +.+.|.|++| .|.+..
T Consensus 126 ne~LqE~G~isI~eLa~~~~Lpsefl~~~l~~r-lG~iI~g~~~--g~~lyT 174 (803)
T PLN03083 126 NERLQECSQIALAELARQLQVGSELVTSMLEPR-LGTIVKARLE--GGQLYT 174 (803)
T ss_pred HHHHHHcCcChHHHHHHhcCChHHHHHHHHHHH-hccceEEEec--CCEEec
Confidence 344555689999999999999999999999887 4478899993 455543
No 420
>PF06969 HemN_C: HemN C-terminal domain; InterPro: IPR010723 Proteins containing this domain are all oxygen-independent coproporphyrinogen-III oxidases (HemN). This enzyme catalyses the oxygen-independent conversion of coproporphyrinogen-III to protoporphyrinogen-IX [], one of the last steps in haem biosynthesis. The function of this domain is unclear, but comparison to other proteins containing a radical SAM domain suggest it may be a substrate binding domain.; GO: 0004109 coproporphyrinogen oxidase activity, 0006779 porphyrin-containing compound biosynthetic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1OLT_A.
Probab=20.72 E-value=3.2e+02 Score=19.44 Aligned_cols=56 Identities=16% Similarity=0.216 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhcccccccchhHHHHhCCCh-HHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 328 TLLEQNLCRLIEPYSRVEIAHIAELIELPI-DHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 328 ~i~~~~l~~i~~pYs~I~l~~la~~l~l~~-~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
++++..+..+-. ..-|+++.+.+.+|.+. +.....+.+++.+|.+ ...++.+.+++
T Consensus 6 ~~~e~i~~~LR~-~~Gi~~~~~~~~~g~~~~~~~~~~l~~l~~~Gll----~~~~~~l~lT~ 62 (66)
T PF06969_consen 6 RLREYIMLGLRC-NEGIDLSEFEQRFGIDFAEEFQKELEELQEDGLL----EIDGGRLRLTE 62 (66)
T ss_dssp HHHHHHHHHHHH-HSEEEHHHHHHHTT--THHH-HHHHHHHHHTTSE----EE-SSEEEE-T
T ss_pred HHHHHHHHHHHh-HCCcCHHHHHHHHCcCHHHHHHHHHHHHHHCCCE----EEeCCEEEECc
Confidence 344444444433 47899999999999985 4558889999999766 44556666654
No 421
>PF04297 UPF0122: Putative helix-turn-helix protein, YlxM / p13 like; InterPro: IPR007394 Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13 (O05290 from SWISSPROT). Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway [].; PDB: 1S7O_A 1XSV_B.
Probab=20.61 E-value=94 Score=25.24 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhhcc--cccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 326 YDTLLEQNLCRLIEP--YSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 326 ~~~i~~~~l~~i~~p--Ys~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
+..+....=.+++.. ..-.|+++||+.+|+|..-|-+.+-+..
T Consensus 14 Yg~LLT~kQ~~~l~lyy~eDlSlsEIAe~~~iSRqaV~d~ikr~~ 58 (101)
T PF04297_consen 14 YGELLTEKQREILELYYEEDLSLSEIAEELGISRQAVYDSIKRAE 58 (101)
T ss_dssp HGGGS-HHHHHHHHHHCTS---HHHHHHHCTS-HHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHccCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 333344444555553 3789999999999999988887777654
No 422
>PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease
Probab=20.61 E-value=1.5e+02 Score=20.54 Aligned_cols=38 Identities=16% Similarity=0.162 Sum_probs=28.7
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
++.++.+..-=...+...+|..||++..-|-+.+...+
T Consensus 7 d~lll~L~~LR~~~~~~~La~~FgIs~stvsri~~~~~ 44 (53)
T PF13613_consen 7 DQLLLTLMYLRLNLTFQDLAYRFGISQSTVSRIFHEWI 44 (53)
T ss_pred HHHHHHHHHHHcCCcHhHHhhheeecHHHHHHHHHHHH
Confidence 34445555555788999999999999988888777665
No 423
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=20.48 E-value=6.7e+02 Score=23.04 Aligned_cols=114 Identities=17% Similarity=0.113 Sum_probs=0.0
Q ss_pred HHhcccHHHHHHHH-HHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhh-------H
Q 014555 137 LMESREYTEALTLL-TSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQ-------G 208 (422)
Q Consensus 137 ~~~~g~~~~A~~~l-~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~-------a 208 (422)
+-...++++|++.+ -.++.......+...+..+++-.+.+|-..+|-..-+.++..|...-...+ ...-. .
T Consensus 87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~-~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAY-ENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHH-HhCcCCCCCchHH
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHH
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLK 251 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lk 251 (422)
.+...-|-++..-|+|.+|.+.|-.++........+..++..+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR 208 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMAR 208 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHH
No 424
>cd06571 Bac_DnaA_C C-terminal domain of bacterial DnaA proteins. The DNA-binding C-terminal domain of DnaA contains a helix-turn-helix motif that specifically interacts with the DnaA box, a 9-mer motif that occurs repetitively in the replication origin oriC. Multiple copies of DnaA, which is an ATPase, bind to 9-mers at the origin and form an initial complex in which the DNA strands are being separated in an ATP-dependent step.
Probab=20.42 E-value=2.7e+02 Score=21.62 Aligned_cols=42 Identities=24% Similarity=0.331 Sum_probs=30.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHH
Q 014555 287 KAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDT 328 (422)
Q Consensus 287 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~ 328 (422)
.++.+.|.+.+-......+...+..+..||.+...++.+.++
T Consensus 48 ~~Ig~~fg~r~hStV~~a~~ri~~~~~~d~~~~~~v~~i~~~ 89 (90)
T cd06571 48 PEIGRAFGGRDHSTVLHAVRKIEELLEEDPELKEDVEELEKK 89 (90)
T ss_pred HHHHHHhCCCCHhHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 456666766777777777777777888899888777777654
No 425
>PF03444 HrcA_DNA-bdg: Winged helix-turn-helix transcription repressor, HrcA DNA-binding; InterPro: IPR005104 Prokaryotic cells have a defence mechanism against a sudden heat-shock stress. Commonly, they induce a set of proteins that protect cellular proteins from being denatured by heat. Among such proteins are the GroE and DnaK chaperones whose transcription is regulated by a heat-shock repressor protein HrcA. HrcA is a winged helix-turn-helix repressor that negatively regulates the transcription of dnaK and groE operons by binding the upstream CIRCE (controlling inverted repeat of chaperone expression) element. In Bacillus subtilis this element is a perfect 9 base pair inverted repeat separated by a 9 base pair spacer. The crystal structure of a heat-inducible transcriptional repressor, HrcA, from Thermotoga maritima has been reported at 2.2A resolution. HrcA is composed of three domains: an N-terminal winged helix-turn-helix domain (WHTH), a GAF-like domain, and an inserted dimerizing domain (IDD). The IDD shows a unique structural fold with an anti-parallel beta-sheet composed of three beta-strands sided by four alpha-helices. HrcA crystallises as a dimer, which is formed through hydrophobic contact between the IDDs and a limited contact that involves conserved residues between the GAF-like domains []. The structural studies suggest that the inactive form of HrcA is the dimer and this is converted to its DNA-binding form by interaction with GroEL, which binds to a conserved C-terminal sequence region [, ]. Comparison of the HrcA-CIRCE complexes from B. subtilis and Bacillus thermoglucosidasius (Geobacillus thermoglucosidasius), which grow at vastly different ranges of temperature shows that the thermostability profiles were consistent with the difference in the growth temperatures suggesting that HrcA can function as a thermosensor to detect temperature changes in cells []. Any increase in temperature causes the dissociation of the HrcA from the CIRCE complex with the concomitant activation of transcription of the groE and dnaK operons. This domain represents the winged helix-turn-helix DNA-binding domain which is located close to the N terminus of HrcA. This domain is also found at the N terminus of a set of uncharacterised proteins that have two C-terminal CBS domains. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent
Probab=20.28 E-value=3.3e+02 Score=21.00 Aligned_cols=56 Identities=14% Similarity=0.073 Sum_probs=42.0
Q ss_pred HHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 329 LLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 329 i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
|...-+-.+.+.=.-|.=..||+.+++++.-|-..++.+-.-|.+.++--...|.+
T Consensus 9 IL~alV~~Y~~~~~PVgSk~ia~~l~~s~aTIRN~M~~Le~lGlve~~p~~s~Gri 64 (78)
T PF03444_consen 9 ILKALVELYIETGEPVGSKTIAEELGRSPATIRNEMADLEELGLVESQPHPSGGRI 64 (78)
T ss_pred HHHHHHHHHHhcCCCcCHHHHHHHHCCChHHHHHHHHHHHHCCCccCCCCCCCCCC
Confidence 33333444445557888999999999999999999999999999877555445543
No 426
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=20.27 E-value=5.8e+02 Score=23.29 Aligned_cols=51 Identities=20% Similarity=0.162 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHhhhccc----hhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 143 YTEALTLLTSLVKEVRRLDDK----LLLVDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 143 ~~~A~~~l~~l~~e~~~~~~~----~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
.+-|+.+++.|.+|.....+- ..++-+.+ +-+|+..|.+++|...+.+--.
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~a--V~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQA--VAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH--HHHHHhcCchHHHHHHHHHHhc
Confidence 466777777776664432211 12222222 4589999999999988876544
No 427
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=20.17 E-value=1.2e+03 Score=25.93 Aligned_cols=62 Identities=19% Similarity=0.210 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 167 VDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 167 ~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
..+-+..+-+++..++-..+...+.+|.++- ...+......|..+...|.+.+|+..|..|.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID-------PLSASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 4466667778888899999988888887652 2445566789999999999999999999985
No 428
>PF07319 DnaI_N: Primosomal protein DnaI N-terminus; InterPro: IPR009928 This entry represents the N terminus (approximately 120 residues) of bacterial primosomal DnaI proteins, although one family member appears to be of viral origin. DnaI is one of the components of the Bacillus subtilis replication restart primosome, and is required for the DnaB75-dependent loading of the DnaC helicase [].; PDB: 2K7R_A.
Probab=20.11 E-value=88 Score=24.82 Aligned_cols=33 Identities=27% Similarity=0.502 Sum_probs=22.1
Q ss_pred HHhhhcCh----hHHHhHHHHHHHHHHHHHHHhhccc
Q 014555 309 KAQLEEDP----IVHRHLSSLYDTLLEQNLCRLIEPY 341 (422)
Q Consensus 309 ~~~l~~D~----~l~~~~~~L~~~i~~~~l~~i~~pY 341 (422)
...+..|| |+..|-..|-+.++++++.++-+++
T Consensus 25 ~~~vl~dp~V~~Fl~~h~~eLt~~~i~rsl~kLyEy~ 61 (94)
T PF07319_consen 25 KQEVLSDPEVQAFLQEHQPELTQEMIERSLSKLYEYV 61 (94)
T ss_dssp HHHHTT-HHHHHHHHHSTTT--HHHHHHTHHHHHHHH
T ss_pred HHHHHcCHHHHHHHHHhHHhcCHHHHHHHHHHHHHHH
Confidence 45678888 5566666788888888888887764
Done!