Query 014555
Match_columns 422
No_of_seqs 218 out of 892
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 13:42:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014555.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014555hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3txn_A 26S proteasome regulato 100.0 4.2E-78 1.5E-82 603.6 41.4 383 38-420 10-393 (394)
2 4b4t_P 26S proteasome regulato 100.0 4.8E-65 1.6E-69 521.7 23.6 403 9-420 19-432 (445)
3 4b4t_Q 26S proteasome regulato 100.0 1.2E-53 4.2E-58 429.8 41.6 417 4-420 1-433 (434)
4 4b4t_R RPN7, 26S proteasome re 100.0 3.7E-45 1.3E-49 373.0 21.0 372 21-403 23-407 (429)
5 4b4t_O 26S proteasome regulato 100.0 7.4E-30 2.5E-34 256.8 25.0 317 93-420 46-391 (393)
6 4b4t_S RPN3, 26S proteasome re 99.9 7.9E-22 2.7E-26 200.9 18.9 217 167-391 231-450 (523)
7 3t5x_A PCI domain-containing p 99.8 4.4E-20 1.5E-24 168.8 14.6 175 203-391 9-195 (203)
8 3t5v_B Nuclear mRNA export pro 99.8 5.1E-17 1.7E-21 164.8 27.3 326 49-390 44-430 (455)
9 1ufm_A COP9 complex subunit 4; 99.7 1.4E-18 4.7E-23 135.5 4.8 73 320-392 7-79 (84)
10 3chm_A COP9 signalosome comple 99.3 3.3E-12 1.1E-16 112.5 9.2 135 249-393 25-161 (169)
11 4b0z_A RPN12, 26S proteasome r 98.8 2.9E-07 9.8E-12 85.2 17.6 195 178-387 18-227 (229)
12 3ro2_A PINS homolog, G-protein 98.7 7.1E-06 2.4E-10 76.8 26.6 228 12-244 10-259 (338)
13 3sf4_A G-protein-signaling mod 98.7 1.2E-05 4.3E-10 77.9 26.9 228 12-244 14-263 (406)
14 3ro2_A PINS homolog, G-protein 98.6 2.4E-06 8.1E-11 80.1 19.9 220 20-242 97-337 (338)
15 4a1s_A PINS, partner of inscut 98.6 2E-05 6.9E-10 77.1 26.6 221 19-244 61-299 (411)
16 3sf4_A G-protein-signaling mod 98.6 1.2E-05 4.1E-10 78.0 23.9 222 20-244 101-343 (406)
17 4a1s_A PINS, partner of inscut 98.5 4.6E-06 1.6E-10 81.8 19.4 222 20-244 140-379 (411)
18 3ulq_A Response regulator aspa 98.5 5.4E-05 1.8E-09 74.0 26.0 210 19-232 116-330 (383)
19 3u3w_A Transcriptional activat 98.4 4E-05 1.4E-09 72.3 21.5 198 46-245 74-274 (293)
20 3q15_A PSP28, response regulat 98.4 0.00016 5.6E-09 70.5 26.2 208 19-231 114-326 (378)
21 1qqe_A Vesicular transport pro 98.3 0.00054 1.8E-08 64.6 27.7 249 44-329 34-284 (292)
22 2ifu_A Gamma-SNAP; membrane fu 98.3 0.00024 8.3E-09 67.6 25.4 189 44-235 33-222 (307)
23 3q15_A PSP28, response regulat 98.3 0.00019 6.7E-09 70.0 24.0 207 49-260 103-311 (378)
24 3ulq_A Response regulator aspa 98.3 0.00065 2.2E-08 66.2 27.3 206 53-262 109-316 (383)
25 2qfc_A PLCR protein; TPR, HTH, 98.2 0.00027 9.2E-09 66.5 22.6 197 48-246 76-275 (293)
26 3ro3_A PINS homolog, G-protein 98.2 8.6E-05 2.9E-09 61.4 16.7 111 130-241 52-162 (164)
27 3gw4_A Uncharacterized protein 98.2 0.00069 2.3E-08 58.9 22.4 142 105-247 44-186 (203)
28 3nf1_A KLC 1, kinesin light ch 98.1 0.00091 3.1E-08 61.9 24.3 222 13-236 33-306 (311)
29 3edt_B KLC 2, kinesin light ch 98.1 0.0022 7.4E-08 58.2 25.6 205 23-236 25-280 (283)
30 3nf1_A KLC 1, kinesin light ch 98.1 0.0028 9.5E-08 58.5 26.0 194 44-238 24-225 (311)
31 3gw4_A Uncharacterized protein 98.0 0.0016 5.6E-08 56.4 22.2 184 19-211 5-190 (203)
32 1hz4_A MALT regulatory protein 98.0 0.0025 8.5E-08 61.5 24.3 215 19-236 27-243 (373)
33 3ro3_A PINS homolog, G-protein 97.9 0.00057 1.9E-08 56.3 16.5 115 129-244 11-125 (164)
34 3ieg_A DNAJ homolog subfamily 97.9 0.016 5.5E-07 54.3 28.8 101 130-239 157-265 (359)
35 3hym_B Cell division cycle pro 97.9 0.00088 3E-08 62.6 18.9 48 21-75 71-119 (330)
36 3hym_B Cell division cycle pro 97.9 0.0039 1.3E-07 58.1 23.3 200 10-240 25-225 (330)
37 3u3w_A Transcriptional activat 97.8 0.0035 1.2E-07 58.8 22.2 191 18-211 87-280 (293)
38 3uq3_A Heat shock protein STI1 97.8 0.0044 1.5E-07 55.5 21.5 196 19-238 18-237 (258)
39 4b4t_Q 26S proteasome regulato 97.8 0.0057 2E-07 59.9 23.9 205 52-258 9-225 (434)
40 1hz4_A MALT regulatory protein 97.8 0.025 8.5E-07 54.3 28.0 198 43-243 10-209 (373)
41 3ieg_A DNAJ homolog subfamily 97.7 0.011 3.8E-07 55.5 24.1 203 14-238 127-336 (359)
42 2pl2_A Hypothetical conserved 97.7 0.0065 2.2E-07 54.3 20.9 196 10-234 8-211 (217)
43 1qqe_A Vesicular transport pro 97.7 0.0022 7.5E-08 60.3 18.2 176 21-197 52-229 (292)
44 3qky_A Outer membrane assembly 97.7 0.011 3.9E-07 53.9 22.3 187 10-249 18-234 (261)
45 2qfc_A PLCR protein; TPR, HTH, 97.6 0.0084 2.9E-07 56.1 21.5 182 18-201 87-271 (293)
46 2xpi_A Anaphase-promoting comp 97.6 0.0047 1.6E-07 63.2 21.3 49 20-75 353-401 (597)
47 2y4t_A DNAJ homolog subfamily 97.6 0.024 8.3E-07 55.5 25.5 207 14-237 101-324 (450)
48 3fp2_A TPR repeat-containing p 97.6 0.07 2.4E-06 53.4 30.0 194 21-240 217-410 (537)
49 2y4t_A DNAJ homolog subfamily 97.6 0.062 2.1E-06 52.5 28.3 99 131-238 181-287 (450)
50 1fch_A Peroxisomal targeting s 97.6 0.011 3.6E-07 56.3 22.0 207 10-240 67-317 (368)
51 3fp2_A TPR repeat-containing p 97.6 0.0092 3.2E-07 60.0 22.6 47 21-75 258-304 (537)
52 3vtx_A MAMA; tetratricopeptide 97.6 0.0026 8.8E-08 54.7 15.9 158 14-196 12-170 (184)
53 2yhc_A BAMD, UPF0169 lipoprote 97.6 0.0059 2E-07 54.8 18.5 173 10-196 7-213 (225)
54 2gw1_A Mitochondrial precursor 97.6 0.005 1.7E-07 61.4 19.7 98 132-236 377-477 (514)
55 4eqf_A PEX5-related protein; a 97.5 0.0023 7.9E-08 61.3 16.5 204 10-237 68-276 (365)
56 2xpi_A Anaphase-promoting comp 97.5 0.005 1.7E-07 63.0 20.0 203 13-237 311-545 (597)
57 2q7f_A YRRB protein; TPR, prot 97.5 0.0056 1.9E-07 54.4 18.0 186 20-237 37-222 (243)
58 2ifu_A Gamma-SNAP; membrane fu 97.5 0.01 3.5E-07 56.1 20.4 171 21-194 51-222 (307)
59 3cv0_A Peroxisome targeting si 97.5 0.044 1.5E-06 50.6 24.5 61 10-77 24-85 (327)
60 2vq2_A PILW, putative fimbrial 97.5 0.016 5.6E-07 50.4 20.1 194 14-235 15-209 (225)
61 4eqf_A PEX5-related protein; a 97.4 0.0085 2.9E-07 57.3 18.9 196 21-240 114-313 (365)
62 2ho1_A Type 4 fimbrial biogene 97.4 0.0082 2.8E-07 53.9 17.7 189 20-238 51-239 (252)
63 2gw1_A Mitochondrial precursor 97.4 0.036 1.2E-06 55.0 23.8 195 19-239 202-403 (514)
64 3u4t_A TPR repeat-containing p 97.3 0.019 6.5E-07 52.0 19.3 59 10-75 6-65 (272)
65 3u4t_A TPR repeat-containing p 97.3 0.0094 3.2E-07 54.1 17.0 213 13-250 43-261 (272)
66 1w3b_A UDP-N-acetylglucosamine 97.3 0.1 3.5E-06 50.1 24.8 53 19-78 46-98 (388)
67 3uq3_A Heat shock protein STI1 97.3 0.051 1.7E-06 48.3 21.1 177 46-236 4-201 (258)
68 3as5_A MAMA; tetratricopeptide 97.3 0.053 1.8E-06 45.3 20.0 168 46-238 7-174 (186)
69 3cv0_A Peroxisome targeting si 97.3 0.028 9.5E-07 52.0 19.8 198 20-236 69-314 (327)
70 2vq2_A PILW, putative fimbrial 97.3 0.045 1.6E-06 47.5 20.1 170 46-238 7-177 (225)
71 4gcn_A Protein STI-1; structur 97.3 0.0038 1.3E-07 51.0 12.1 101 131-237 12-112 (127)
72 3vtx_A MAMA; tetratricopeptide 97.2 0.03 1E-06 47.8 18.3 165 47-236 5-169 (184)
73 4b4t_T 26S proteasome regulato 97.2 0.0078 2.7E-07 56.8 14.8 155 209-366 60-223 (274)
74 1xnf_A Lipoprotein NLPI; TPR, 97.2 0.078 2.7E-06 47.7 21.1 186 21-236 20-205 (275)
75 1w3b_A UDP-N-acetylglucosamine 97.1 0.16 5.6E-06 48.6 24.6 53 19-78 80-132 (388)
76 3as5_A MAMA; tetratricopeptide 97.1 0.055 1.9E-06 45.2 18.4 155 19-198 21-175 (186)
77 3mkr_A Coatomer subunit epsilo 97.1 0.19 6.4E-06 47.1 26.4 189 14-239 7-197 (291)
78 3edt_B KLC 2, kinesin light ch 97.1 0.043 1.5E-06 49.4 18.6 134 107-240 21-159 (283)
79 1fch_A Peroxisomal targeting s 97.1 0.033 1.1E-06 52.8 18.5 203 20-237 39-280 (368)
80 2ho1_A Type 4 fimbrial biogene 97.1 0.041 1.4E-06 49.2 18.1 168 46-236 36-203 (252)
81 4i17_A Hypothetical protein; T 96.9 0.05 1.7E-06 48.2 16.9 138 48-196 8-146 (228)
82 1elr_A TPR2A-domain of HOP; HO 96.8 0.019 6.4E-07 45.2 12.2 102 131-238 8-109 (131)
83 1wi9_A Protein C20ORF116 homol 96.8 0.0031 1.1E-07 46.4 6.3 58 332-389 10-67 (72)
84 1rz4_A Eukaryotic translation 96.8 0.0059 2E-07 55.9 9.6 124 248-386 64-189 (226)
85 2xev_A YBGF; tetratricopeptide 96.7 0.069 2.4E-06 42.3 15.1 102 131-239 6-107 (129)
86 3mkr_A Coatomer subunit epsilo 96.7 0.2 6.8E-06 46.9 20.2 209 13-262 40-249 (291)
87 2q7f_A YRRB protein; TPR, prot 96.7 0.073 2.5E-06 46.9 16.4 154 19-197 70-223 (243)
88 4abn_A Tetratricopeptide repea 96.6 0.091 3.1E-06 53.0 18.6 187 13-229 108-313 (474)
89 2pl2_A Hypothetical conserved 96.5 0.29 1E-05 43.3 19.2 164 48-237 6-180 (217)
90 3qky_A Outer membrane assembly 96.5 0.4 1.4E-05 43.3 20.4 103 131-240 19-129 (261)
91 2r5s_A Uncharacterized protein 96.5 0.073 2.5E-06 45.4 14.4 163 9-194 8-171 (176)
92 3rkv_A Putative peptidylprolyl 96.4 0.045 1.5E-06 45.9 12.6 100 131-237 15-126 (162)
93 4gco_A Protein STI-1; structur 96.4 0.044 1.5E-06 44.5 11.6 93 131-236 17-109 (126)
94 2yhc_A BAMD, UPF0169 lipoprote 96.2 0.52 1.8E-05 41.7 18.9 186 45-237 2-213 (225)
95 3sz7_A HSC70 cochaperone (SGT) 96.2 0.14 4.6E-06 42.9 14.2 96 131-239 15-110 (164)
96 3upv_A Heat shock protein STI1 96.1 0.085 2.9E-06 41.9 12.1 95 131-238 8-102 (126)
97 4i17_A Hypothetical protein; T 96.1 0.1 3.4E-06 46.2 13.7 96 132-236 47-145 (228)
98 3q49_B STIP1 homology and U bo 96.0 0.092 3.1E-06 42.0 12.0 96 131-239 13-108 (137)
99 3mv2_B Coatomer subunit epsilo 96.0 0.047 1.6E-06 52.3 11.4 98 132-239 105-209 (310)
100 1elw_A TPR1-domain of HOP; HOP 96.0 0.16 5.3E-06 38.8 12.6 94 131-237 8-101 (118)
101 2dba_A Smooth muscle cell asso 95.9 0.12 4.2E-06 41.5 12.4 98 131-238 32-129 (148)
102 2lni_A Stress-induced-phosphop 95.9 0.077 2.6E-06 41.8 10.9 95 131-238 20-114 (133)
103 2vyi_A SGTA protein; chaperone 95.8 0.16 5.3E-06 39.6 12.1 94 131-237 16-109 (131)
104 4ga2_A E3 SUMO-protein ligase 95.8 0.092 3.2E-06 43.8 11.2 89 132-233 36-124 (150)
105 2fo7_A Synthetic consensus TPR 95.8 0.49 1.7E-05 36.5 15.4 130 49-196 3-132 (136)
106 3qou_A Protein YBBN; thioredox 95.8 0.28 9.7E-06 45.6 15.6 162 10-194 120-282 (287)
107 1a17_A Serine/threonine protei 95.7 0.27 9.3E-06 40.3 14.0 134 45-235 11-144 (166)
108 2xcb_A PCRH, regulatory protei 95.7 0.29 9.8E-06 39.9 13.9 96 131-239 22-117 (142)
109 1xnf_A Lipoprotein NLPI; TPR, 95.7 0.81 2.8E-05 40.8 18.1 52 20-78 57-108 (275)
110 2vsy_A XCC0866; transferase, g 95.7 0.34 1.2E-05 49.6 17.3 152 20-237 3-157 (568)
111 4gyw_A UDP-N-acetylglucosamine 95.6 0.35 1.2E-05 51.7 17.7 164 47-235 9-172 (723)
112 4abn_A Tetratricopeptide repea 95.6 1.3 4.3E-05 44.4 20.7 95 130-238 105-209 (474)
113 2fbn_A 70 kDa peptidylprolyl i 95.5 0.15 5.2E-06 44.1 11.9 100 131-237 42-151 (198)
114 2vgx_A Chaperone SYCD; alterna 95.4 0.3 1E-05 40.5 13.2 95 131-238 25-119 (148)
115 2kck_A TPR repeat; tetratricop 95.4 0.13 4.5E-06 38.9 10.2 97 132-239 11-108 (112)
116 2fo7_A Synthetic consensus TPR 95.4 0.38 1.3E-05 37.2 13.0 92 132-236 40-131 (136)
117 4ga2_A E3 SUMO-protein ligase 95.3 0.081 2.8E-06 44.2 9.2 92 132-236 2-93 (150)
118 3gyz_A Chaperone protein IPGC; 95.3 0.19 6.4E-06 42.4 11.5 95 131-238 40-134 (151)
119 1hh8_A P67PHOX, NCF-2, neutrop 95.3 0.25 8.6E-06 42.7 12.7 101 132-239 42-152 (213)
120 2pzi_A Probable serine/threoni 95.2 0.92 3.1E-05 47.9 19.1 155 15-195 400-562 (681)
121 1ihg_A Cyclophilin 40; ppiase 95.1 0.2 6.8E-06 48.9 12.7 100 131-237 227-336 (370)
122 4gcn_A Protein STI-1; structur 95.1 0.98 3.3E-05 36.1 14.8 117 45-211 6-123 (127)
123 1hxi_A PEX5, peroxisome target 95.0 0.3 1E-05 39.0 11.5 93 131-236 21-113 (121)
124 3n71_A Histone lysine methyltr 95.0 0.48 1.6E-05 48.2 15.5 108 132-240 314-425 (490)
125 1na0_A Designed protein CTPR3; 95.0 0.42 1.5E-05 36.6 12.0 94 131-237 13-106 (125)
126 1hh8_A P67PHOX, NCF-2, neutrop 94.9 0.56 1.9E-05 40.4 13.9 133 49-196 8-150 (213)
127 2ond_A Cleavage stimulation fa 94.9 2.4 8.2E-05 39.3 19.8 191 23-240 81-273 (308)
128 1ouv_A Conserved hypothetical 94.9 2.1 7.1E-05 38.5 19.1 184 13-237 12-215 (273)
129 3urz_A Uncharacterized protein 94.9 1.4 4.8E-05 38.4 16.5 112 49-196 6-117 (208)
130 2e2e_A Formate-dependent nitri 94.8 0.39 1.3E-05 40.4 12.3 96 131-239 48-146 (177)
131 1a17_A Serine/threonine protei 94.8 1.3 4.5E-05 35.9 16.8 65 132-200 86-150 (166)
132 3urz_A Uncharacterized protein 94.7 1.5 5.2E-05 38.1 16.3 94 131-237 8-117 (208)
133 4g1t_A Interferon-induced prot 94.6 1.8 6.2E-05 42.2 18.2 106 131-236 55-166 (472)
134 1p5q_A FKBP52, FK506-binding p 94.4 0.34 1.2E-05 46.3 12.2 100 131-237 151-259 (336)
135 1p5q_A FKBP52, FK506-binding p 94.4 2.5 8.4E-05 40.1 18.2 150 45-238 145-295 (336)
136 4gyw_A UDP-N-acetylglucosamine 94.4 0.52 1.8E-05 50.4 14.5 159 14-197 16-175 (723)
137 1kt0_A FKBP51, 51 kDa FK506-bi 94.2 0.44 1.5E-05 47.7 12.8 99 131-236 272-379 (457)
138 3n71_A Histone lysine methyltr 94.1 2.7 9.4E-05 42.6 18.6 127 106-235 328-462 (490)
139 2h6f_A Protein farnesyltransfe 94.0 4.8 0.00016 39.2 22.2 255 46-332 96-366 (382)
140 2l6j_A TPR repeat-containing p 93.9 0.17 5.7E-06 38.6 7.3 61 131-197 8-68 (111)
141 1elr_A TPR2A-domain of HOP; HO 93.9 1.7 5.8E-05 33.4 14.2 65 132-196 43-108 (131)
142 4g1t_A Interferon-induced prot 93.8 1.9 6.4E-05 42.1 16.5 60 173-236 340-400 (472)
143 3lpz_A GET4 (YOR164C homolog); 93.7 5.1 0.00017 38.5 21.7 128 17-150 23-159 (336)
144 3qww_A SET and MYND domain-con 93.6 0.47 1.6E-05 47.5 11.7 100 139-239 310-413 (433)
145 2ond_A Cleavage stimulation fa 93.6 4.5 0.00015 37.4 18.0 159 20-197 113-271 (308)
146 2wpv_A GET4, UPF0363 protein Y 93.5 2.3 7.7E-05 40.6 15.7 132 17-150 24-157 (312)
147 1ouv_A Conserved hypothetical 93.4 4.1 0.00014 36.4 20.7 155 48-234 7-176 (273)
148 2c2l_A CHIP, carboxy terminus 93.3 0.55 1.9E-05 43.4 11.0 96 131-239 8-103 (281)
149 2v5f_A Prolyl 4-hydroxylase su 92.9 1.3 4.4E-05 34.3 10.9 67 130-196 8-75 (104)
150 1qgp_A Protein (double strande 92.8 0.25 8.6E-06 36.9 6.3 54 332-386 17-73 (77)
151 1xi4_A Clathrin heavy chain; a 92.8 17 0.00058 41.8 28.2 90 132-234 1110-1221(1630)
152 3rkv_A Putative peptidylprolyl 92.7 3 0.0001 34.3 13.8 118 46-197 10-127 (162)
153 2ooe_A Cleavage stimulation fa 92.4 8.7 0.0003 38.4 19.3 189 24-239 304-494 (530)
154 3k9i_A BH0479 protein; putativ 92.4 0.64 2.2E-05 36.3 8.6 90 140-239 3-92 (117)
155 4f3v_A ESX-1 secretion system 92.3 0.68 2.3E-05 43.5 10.0 122 126-262 101-223 (282)
156 2hr2_A Hypothetical protein; a 92.1 2.9 9.8E-05 35.7 12.8 107 131-237 15-131 (159)
157 3qwp_A SET and MYND domain-con 91.9 1.9 6.6E-05 42.9 13.3 105 135-240 295-403 (429)
158 1kt0_A FKBP51, 51 kDa FK506-bi 91.7 6.9 0.00024 38.8 17.3 152 45-240 266-418 (457)
159 2fbn_A 70 kDa peptidylprolyl i 91.5 5.9 0.0002 33.6 16.6 118 43-196 34-151 (198)
160 2vsy_A XCC0866; transferase, g 91.3 1.5 5E-05 44.8 12.1 94 131-237 27-120 (568)
161 2xev_A YBGF; tetratricopeptide 91.1 1.2 4.3E-05 34.6 9.1 62 132-196 44-105 (129)
162 3ma5_A Tetratricopeptide repea 90.9 1.4 5E-05 33.4 9.0 63 131-199 11-73 (100)
163 4gco_A Protein STI-1; structur 90.8 2.1 7.3E-05 34.1 10.4 98 47-196 13-110 (126)
164 2e2e_A Formate-dependent nitri 90.6 2.8 9.5E-05 34.9 11.4 126 12-155 15-143 (177)
165 1qbj_A Protein (double-strande 90.6 0.32 1.1E-05 36.7 4.7 58 331-389 12-72 (81)
166 1xn7_A Hypothetical protein YH 90.5 0.19 6.6E-06 37.7 3.3 44 331-374 4-47 (78)
167 1ihg_A Cyclophilin 40; ppiase 90.4 10 0.00035 36.5 16.7 119 43-197 219-337 (370)
168 3t5v_A Nuclear mRNA export pro 90.3 1.3 4.4E-05 42.3 9.8 113 244-364 113-246 (316)
169 2k02_A Ferrous iron transport 90.0 0.47 1.6E-05 36.4 5.1 46 332-377 5-50 (87)
170 2h6f_A Protein farnesyltransfe 90.0 15 0.0005 35.6 19.4 183 20-234 111-302 (382)
171 2kat_A Uncharacterized protein 90.0 1.9 6.5E-05 33.1 9.1 61 131-197 23-83 (115)
172 2xcb_A PCRH, regulatory protei 89.8 2.1 7.2E-05 34.5 9.6 100 47-198 18-117 (142)
173 3k9i_A BH0479 protein; putativ 89.7 1.2 4.1E-05 34.7 7.8 62 130-197 30-91 (117)
174 3mv2_B Coatomer subunit epsilo 89.7 14 0.00047 35.0 17.7 143 130-290 139-293 (310)
175 2kc7_A BFR218_protein; tetratr 89.6 3.1 0.00011 30.7 9.8 61 131-197 4-65 (99)
176 2ooe_A Cleavage stimulation fa 89.2 19 0.00064 35.9 19.0 114 107-237 258-385 (530)
177 3sz7_A HSC70 cochaperone (SGT) 89.1 4.9 0.00017 33.0 11.7 101 46-198 10-110 (164)
178 2vyi_A SGTA protein; chaperone 89.1 1.8 6.1E-05 33.1 8.4 100 45-196 10-109 (131)
179 1wao_1 Serine/threonine protei 88.8 0.83 2.8E-05 46.0 7.6 92 133-237 12-103 (477)
180 2if4_A ATFKBP42; FKBP-like, al 88.7 1 3.5E-05 43.0 7.8 99 131-236 183-292 (338)
181 2lni_A Stress-induced-phosphop 88.5 6.9 0.00024 29.9 13.5 100 45-196 14-113 (133)
182 3upv_A Heat shock protein STI1 88.4 3.2 0.00011 32.3 9.5 60 132-197 43-102 (126)
183 2dba_A Smooth muscle cell asso 88.0 8.2 0.00028 30.2 12.8 102 47-197 28-129 (148)
184 3q49_B STIP1 homology and U bo 87.7 7.2 0.00025 30.3 11.4 99 48-198 10-108 (137)
185 2heo_A Z-DNA binding protein 1 87.5 0.8 2.7E-05 33.0 4.8 42 334-375 15-57 (67)
186 2jt1_A PEFI protein; solution 87.5 0.73 2.5E-05 34.4 4.6 45 331-375 6-56 (77)
187 1na0_A Designed protein CTPR3; 87.2 3.2 0.00011 31.3 8.7 59 132-196 48-106 (125)
188 2vgx_A Chaperone SYCD; alterna 86.9 3.5 0.00012 33.8 9.3 61 132-198 60-120 (148)
189 2kck_A TPR repeat; tetratricop 86.9 2.7 9.3E-05 31.1 8.0 61 132-196 45-106 (112)
190 1na3_A Designed protein CTPR2; 86.8 2.5 8.4E-05 30.4 7.4 60 131-196 13-72 (91)
191 1elw_A TPR1-domain of HOP; HOP 86.6 4.5 0.00016 30.1 9.2 59 132-196 43-101 (118)
192 1ub9_A Hypothetical protein PH 86.3 4 0.00014 30.9 8.6 69 341-411 28-96 (100)
193 1wao_1 Serine/threonine protei 86.0 2.6 9.1E-05 42.2 9.4 90 132-232 45-134 (477)
194 2pzi_A Probable serine/threoni 85.9 16 0.00055 38.2 15.8 183 130-338 436-625 (681)
195 3ma5_A Tetratricopeptide repea 85.3 8 0.00027 29.0 10.0 70 168-244 8-77 (100)
196 1sfx_A Conserved hypothetical 85.3 6.2 0.00021 30.0 9.4 39 341-379 32-70 (109)
197 3qww_A SET and MYND domain-con 85.0 4.4 0.00015 40.3 10.4 78 130-207 343-424 (433)
198 3gyz_A Chaperone protein IPGC; 84.8 5.6 0.00019 33.0 9.5 99 47-197 36-134 (151)
199 3qwp_A SET and MYND domain-con 84.8 17 0.00057 35.9 14.5 79 130-208 332-414 (429)
200 2v79_A DNA replication protein 84.7 2.8 9.6E-05 34.7 7.3 61 341-404 49-111 (135)
201 4e6h_A MRNA 3'-END-processing 84.5 39 0.0013 35.5 17.9 196 131-356 382-600 (679)
202 2kat_A Uncharacterized protein 84.1 11 0.00037 28.6 10.4 70 168-244 20-89 (115)
203 2if4_A ATFKBP42; FKBP-like, al 83.7 1.4 4.9E-05 41.9 5.9 152 45-237 177-328 (338)
204 1na3_A Designed protein CTPR2; 83.3 7.8 0.00027 27.5 8.8 65 166-237 8-72 (91)
205 2htj_A P fimbrial regulatory p 82.8 2.6 8.9E-05 31.1 5.9 42 334-375 5-46 (81)
206 3r0a_A Putative transcriptiona 81.9 6.8 0.00023 31.4 8.6 67 344-410 43-115 (123)
207 2ia0_A Putative HTH-type trans 81.8 2.4 8.3E-05 36.4 6.1 48 333-380 21-71 (171)
208 3qou_A Protein YBBN; thioredox 81.5 7.5 0.00026 35.6 9.8 94 130-236 120-213 (287)
209 2oqg_A Possible transcriptiona 81.1 9 0.00031 29.7 8.9 37 342-378 33-69 (114)
210 2kc7_A BFR218_protein; tetratr 80.4 8.2 0.00028 28.3 8.2 61 172-238 5-65 (99)
211 1xi4_A Clathrin heavy chain; a 80.3 91 0.0031 36.0 25.3 200 13-233 1111-1341(1630)
212 3cuo_A Uncharacterized HTH-typ 80.2 6.1 0.00021 29.8 7.4 45 336-380 31-75 (99)
213 2r5s_A Uncharacterized protein 80.1 8 0.00027 32.2 8.8 94 132-239 45-139 (176)
214 2d1h_A ST1889, 109AA long hypo 79.6 12 0.0004 28.4 9.0 47 335-381 28-74 (109)
215 4g26_A Pentatricopeptide repea 79.6 50 0.0017 33.1 16.0 165 49-234 28-201 (501)
216 3f6o_A Probable transcriptiona 79.6 6.4 0.00022 31.2 7.6 65 342-411 30-94 (118)
217 2l6j_A TPR repeat-containing p 78.7 17 0.00059 26.7 10.4 66 168-240 5-70 (111)
218 2xm6_A Protein corresponding t 78.5 52 0.0018 32.1 19.4 90 130-236 331-431 (490)
219 1hxi_A PEX5, peroxisome target 78.3 6.9 0.00024 30.6 7.4 59 132-196 56-114 (121)
220 1q1h_A TFE, transcription fact 78.1 1.5 5E-05 34.5 3.1 72 315-386 5-78 (110)
221 2c2l_A CHIP, carboxy terminus 77.9 31 0.001 31.3 12.8 97 48-156 5-101 (281)
222 2xm6_A Protein corresponding t 77.9 55 0.0019 32.0 19.4 176 20-236 57-251 (490)
223 2hzt_A Putative HTH-type trans 77.2 11 0.00037 29.3 8.1 43 341-383 25-68 (107)
224 2v5f_A Prolyl 4-hydroxylase su 77.2 16 0.00054 27.8 9.0 69 168-236 6-74 (104)
225 2cg4_A Regulatory protein ASNC 76.9 3.4 0.00012 34.4 5.3 48 333-380 12-62 (152)
226 1oyi_A Double-stranded RNA-bin 76.8 2.9 9.9E-05 31.5 4.2 40 335-375 23-62 (82)
227 3jth_A Transcription activator 76.7 11 0.00037 28.5 7.9 38 342-379 35-72 (98)
228 3i4p_A Transcriptional regulat 76.6 3.1 0.0001 35.3 5.0 50 331-380 5-57 (162)
229 2cfx_A HTH-type transcriptiona 76.2 3.6 0.00012 34.0 5.3 48 333-380 9-59 (144)
230 2dbb_A Putative HTH-type trans 75.8 3 0.0001 34.6 4.7 48 333-380 13-63 (151)
231 2fbi_A Probable transcriptiona 75.3 17 0.00057 29.0 9.2 44 341-384 48-91 (142)
232 2p5v_A Transcriptional regulat 75.2 3.7 0.00013 34.6 5.2 48 333-380 14-64 (162)
233 2kko_A Possible transcriptiona 75.2 8.1 0.00028 30.1 6.9 37 342-378 37-73 (108)
234 3rjv_A Putative SEL1 repeat pr 73.5 43 0.0015 28.7 18.6 187 23-249 3-205 (212)
235 1ku9_A Hypothetical protein MJ 73.1 21 0.00073 28.6 9.4 41 342-382 40-80 (152)
236 2e1c_A Putative HTH-type trans 72.7 3.9 0.00013 35.1 4.7 47 333-379 31-80 (171)
237 3rjv_A Putative SEL1 repeat pr 72.4 15 0.00051 31.7 8.7 89 130-236 21-117 (212)
238 2w25_A Probable transcriptiona 72.2 5.3 0.00018 33.1 5.3 48 333-380 11-61 (150)
239 1tbx_A ORF F-93, hypothetical 71.5 17 0.00057 27.5 7.7 52 337-388 16-71 (99)
240 2nnn_A Probable transcriptiona 71.5 19 0.00066 28.5 8.6 43 341-383 50-92 (140)
241 1jgs_A Multiple antibiotic res 71.0 18 0.00063 28.6 8.4 43 341-383 46-88 (138)
242 4f3v_A ESX-1 secretion system 70.9 37 0.0013 31.5 11.4 99 132-238 140-238 (282)
243 2a61_A Transcriptional regulat 70.8 24 0.00081 28.2 9.1 44 341-384 45-88 (145)
244 3df8_A Possible HXLR family tr 70.7 13 0.00044 29.2 7.0 77 330-407 29-107 (111)
245 2cyy_A Putative HTH-type trans 70.5 4.3 0.00015 33.8 4.4 47 333-379 11-60 (151)
246 1xd7_A YWNA; structural genomi 70.5 4.7 0.00016 33.5 4.6 56 331-388 12-67 (145)
247 2qlz_A Transcription factor PF 70.3 23 0.00079 31.9 9.5 46 340-388 175-220 (232)
248 2pn6_A ST1022, 150AA long hypo 70.3 5.3 0.00018 33.1 4.9 48 333-380 7-57 (150)
249 3pqk_A Biofilm growth-associat 69.9 29 0.001 26.2 8.9 46 342-387 35-80 (102)
250 4ham_A LMO2241 protein; struct 69.8 32 0.0011 27.7 9.6 64 323-388 17-81 (134)
251 1lj9_A Transcriptional regulat 69.5 41 0.0014 26.7 10.4 42 341-382 41-82 (144)
252 3bpv_A Transcriptional regulat 69.1 17 0.00059 28.8 7.8 49 337-385 37-85 (138)
253 1b89_A Protein (clathrin heavy 68.9 96 0.0033 30.8 14.6 85 52-152 212-307 (449)
254 1z7u_A Hypothetical protein EF 68.8 30 0.001 26.9 9.0 45 342-386 34-79 (112)
255 2y75_A HTH-type transcriptiona 68.7 7.6 0.00026 31.3 5.4 46 342-387 25-70 (129)
256 1i1g_A Transcriptional regulat 68.6 6 0.00021 32.2 4.8 44 333-376 8-51 (141)
257 3tgn_A ADC operon repressor AD 68.4 17 0.00058 29.2 7.7 49 334-383 43-91 (146)
258 2fbh_A Transcriptional regulat 67.8 19 0.00065 28.8 7.8 50 339-388 48-100 (146)
259 3tqn_A Transcriptional regulat 67.7 11 0.00039 29.6 6.2 62 323-386 12-74 (113)
260 2gxg_A 146AA long hypothetical 67.4 22 0.00076 28.4 8.2 47 335-382 43-89 (146)
261 2hr3_A Probable transcriptiona 67.0 29 0.00099 27.8 8.8 48 341-388 48-98 (147)
262 1sfu_A 34L protein; protein/Z- 66.7 12 0.00042 27.5 5.5 41 336-376 22-62 (75)
263 2rdp_A Putative transcriptiona 66.6 24 0.0008 28.5 8.2 43 341-383 54-96 (150)
264 1s3j_A YUSO protein; structura 66.5 20 0.00068 29.1 7.8 47 336-382 44-90 (155)
265 2fsw_A PG_0823 protein; alpha- 66.3 23 0.00077 27.3 7.6 44 341-384 36-80 (107)
266 2nyx_A Probable transcriptiona 66.2 27 0.00093 29.0 8.7 42 341-382 57-98 (168)
267 3txn_A 26S proteasome regulato 65.9 1E+02 0.0035 30.0 20.1 79 172-251 104-183 (394)
268 3bja_A Transcriptional regulat 65.9 22 0.00075 28.1 7.8 45 338-382 42-86 (139)
269 1r7j_A Conserved hypothetical 65.6 32 0.0011 26.2 8.2 33 344-376 21-53 (95)
270 3eco_A MEPR; mutlidrug efflux 65.6 28 0.00095 27.6 8.4 41 342-382 46-86 (139)
271 1xmk_A Double-stranded RNA-spe 65.5 5.8 0.0002 29.6 3.7 43 332-374 14-57 (79)
272 3k0l_A Repressor protein; heli 65.5 21 0.00073 29.4 7.9 47 336-382 53-99 (162)
273 1ylf_A RRF2 family protein; st 65.5 14 0.00048 30.6 6.6 45 342-387 29-73 (149)
274 3cdh_A Transcriptional regulat 65.4 22 0.00075 28.9 7.8 55 334-388 48-105 (155)
275 3bj6_A Transcriptional regulat 65.3 19 0.00066 29.1 7.5 55 334-388 45-102 (152)
276 3bdd_A Regulatory protein MARR 65.2 10 0.00035 30.3 5.6 46 337-382 39-84 (142)
277 3oop_A LIN2960 protein; protei 65.2 17 0.00059 29.1 7.1 48 341-388 49-99 (143)
278 3ffl_A Anaphase-promoting comp 65.2 64 0.0022 27.5 11.9 67 134-200 27-96 (167)
279 3ech_A MEXR, multidrug resista 64.9 14 0.00047 29.8 6.3 43 341-383 49-91 (142)
280 3ffl_A Anaphase-promoting comp 64.4 29 0.00098 29.7 8.3 70 170-239 23-94 (167)
281 3g3z_A NMB1585, transcriptiona 63.6 18 0.00063 29.0 7.0 48 341-388 43-93 (145)
282 3t8r_A Staphylococcus aureus C 63.6 16 0.00055 30.1 6.5 54 332-385 15-70 (143)
283 3s2w_A Transcriptional regulat 63.2 24 0.00082 28.9 7.7 48 341-388 62-112 (159)
284 3lwf_A LIN1550 protein, putati 63.1 25 0.00084 29.7 7.7 57 332-388 31-89 (159)
285 2eth_A Transcriptional regulat 63.0 31 0.0011 28.1 8.3 42 341-382 56-97 (154)
286 3neu_A LIN1836 protein; struct 62.7 14 0.00047 29.8 5.8 63 323-387 16-79 (125)
287 3by6_A Predicted transcription 62.3 13 0.00045 30.0 5.6 63 323-387 14-77 (126)
288 1klx_A Cysteine rich protein B 60.2 43 0.0015 26.6 8.6 87 133-236 31-125 (138)
289 1on2_A Transcriptional regulat 60.0 31 0.0011 27.7 7.7 49 337-388 16-64 (142)
290 1v4r_A Transcriptional repress 59.8 5.6 0.00019 30.7 2.8 63 323-387 14-77 (102)
291 2b0l_A GTP-sensing transcripti 59.6 12 0.00041 29.1 4.7 51 336-386 35-86 (102)
292 3cjn_A Transcriptional regulat 59.5 29 0.00099 28.4 7.6 45 338-382 61-105 (162)
293 2frh_A SARA, staphylococcal ac 59.0 34 0.0012 27.0 7.7 41 342-382 52-92 (127)
294 2qww_A Transcriptional regulat 58.5 14 0.00046 30.2 5.2 48 341-388 53-105 (154)
295 2pg4_A Uncharacterized protein 58.5 22 0.00075 26.6 6.0 32 343-374 30-62 (95)
296 1y0u_A Arsenical resistance op 58.1 20 0.00067 27.0 5.7 44 342-389 42-85 (96)
297 2fa5_A Transcriptional regulat 58.1 25 0.00086 28.8 6.9 42 341-382 61-102 (162)
298 2f2e_A PA1607; transcription f 57.6 30 0.001 28.4 7.3 42 341-382 35-76 (146)
299 3e6m_A MARR family transcripti 57.4 30 0.001 28.5 7.3 48 341-388 65-115 (161)
300 3b73_A PHIH1 repressor-like pr 57.3 14 0.00049 29.3 4.8 54 332-388 16-71 (111)
301 2ek5_A Predicted transcription 57.3 19 0.00065 29.2 5.8 62 323-386 7-69 (129)
302 3nrv_A Putative transcriptiona 56.7 13 0.00044 30.1 4.7 46 337-382 48-93 (148)
303 3bro_A Transcriptional regulat 56.6 20 0.00068 28.5 5.9 46 343-388 50-98 (141)
304 3hsr_A HTH-type transcriptiona 56.2 15 0.00053 29.5 5.1 55 334-388 41-98 (140)
305 2qvo_A Uncharacterized protein 55.3 18 0.0006 27.3 5.0 46 343-388 30-75 (95)
306 3nqo_A MARR-family transcripti 55.3 40 0.0014 28.7 7.9 43 340-382 54-96 (189)
307 3f3x_A Transcriptional regulat 54.9 48 0.0016 26.4 8.1 40 345-384 52-91 (144)
308 1r1u_A CZRA, repressor protein 54.6 28 0.00097 26.7 6.2 37 342-378 38-74 (106)
309 2bv6_A MGRA, HTH-type transcri 54.5 17 0.00057 29.1 5.1 46 337-382 45-90 (142)
310 1yyv_A Putative transcriptiona 53.9 84 0.0029 25.2 10.8 45 341-385 46-91 (131)
311 2k9l_A RNA polymerase sigma fa 53.6 9.3 0.00032 28.1 2.9 26 341-366 46-71 (76)
312 3deu_A Transcriptional regulat 53.4 52 0.0018 27.3 8.2 48 341-388 66-116 (166)
313 2pex_A Transcriptional regulat 53.0 18 0.0006 29.5 5.0 48 341-388 59-109 (153)
314 3k69_A Putative transcription 53.0 15 0.00051 31.1 4.6 46 341-386 26-71 (162)
315 4a5n_A Uncharacterized HTH-typ 52.8 90 0.0031 25.2 9.4 70 341-410 37-111 (131)
316 4hbl_A Transcriptional regulat 52.5 14 0.00048 30.1 4.3 54 335-388 47-103 (149)
317 4g26_A Pentatricopeptide repea 52.0 1.4E+02 0.0047 29.8 12.4 121 22-160 86-208 (501)
318 2hoe_A N-acetylglucosamine kin 52.0 8.2 0.00028 37.4 3.1 57 318-375 6-65 (380)
319 3u2r_A Regulatory protein MARR 51.6 54 0.0019 27.0 8.0 42 342-383 61-102 (168)
320 1u2w_A CADC repressor, cadmium 51.6 55 0.0019 25.8 7.7 37 341-377 54-90 (122)
321 3bee_A Putative YFRE protein; 51.5 42 0.0014 25.1 6.6 61 10-77 9-73 (93)
322 3bee_A Putative YFRE protein; 51.4 65 0.0022 23.9 7.7 57 174-237 13-72 (93)
323 2xvc_A ESCRT-III, SSO0910; cel 50.8 16 0.00056 25.3 3.5 42 333-374 14-56 (59)
324 1uly_A Hypothetical protein PH 50.5 20 0.00068 31.2 5.1 42 334-376 25-66 (192)
325 2lnb_A Z-DNA-binding protein 1 50.4 31 0.0011 25.5 5.2 36 339-374 30-65 (80)
326 1z91_A Organic hydroperoxide r 49.8 16 0.00055 29.4 4.2 48 341-388 52-102 (147)
327 2hr2_A Hypothetical protein; a 49.2 1.2E+02 0.004 25.5 13.8 115 49-197 13-132 (159)
328 4e6h_A MRNA 3'-END-processing 48.9 1.1E+02 0.0037 32.1 11.4 117 109-237 331-463 (679)
329 3kp7_A Transcriptional regulat 48.8 17 0.00058 29.6 4.2 54 334-388 43-101 (151)
330 3fm5_A Transcriptional regulat 48.2 52 0.0018 26.4 7.3 42 342-383 53-94 (150)
331 2x4h_A Hypothetical protein SS 46.7 28 0.00095 27.9 5.2 51 334-388 22-72 (139)
332 3kae_A CDC27, possible protein 46.2 1.3E+02 0.0044 26.1 9.2 93 132-237 38-143 (242)
333 3boq_A Transcriptional regulat 46.2 32 0.0011 28.0 5.7 50 339-388 58-110 (160)
334 4b4t_R RPN7, 26S proteasome re 45.8 2.2E+02 0.0075 27.6 13.7 99 49-154 133-235 (429)
335 2kfs_A Conserved hypothetical 45.7 19 0.00066 30.1 4.0 39 342-387 30-69 (148)
336 2p5k_A Arginine repressor; DNA 44.6 56 0.0019 22.0 5.9 50 331-385 7-61 (64)
337 1r1t_A Transcriptional repress 44.5 99 0.0034 24.3 8.1 37 342-378 58-94 (122)
338 1zu2_A Mitochondrial import re 44.4 98 0.0033 25.9 8.4 47 183-236 62-119 (158)
339 1j5y_A Transcriptional regulat 44.3 36 0.0012 29.2 5.8 49 327-375 19-69 (187)
340 3f6v_A Possible transcriptiona 42.7 49 0.0017 27.4 6.2 53 325-379 55-107 (151)
341 2pi2_A Replication protein A 3 42.6 5.2 0.00018 37.1 0.0 38 342-379 223-261 (270)
342 2jsc_A Transcriptional regulat 42.3 58 0.002 25.4 6.4 36 343-378 34-69 (118)
343 4aik_A Transcriptional regulat 42.1 1.4E+02 0.0047 24.2 9.3 47 342-388 45-94 (151)
344 2jpc_A SSRB; DNA binding prote 41.8 32 0.0011 23.1 4.2 29 341-369 11-39 (61)
345 2pft_A Exocytosis protein; hel 40.9 69 0.0024 32.8 8.2 81 284-368 486-567 (571)
346 3ic7_A Putative transcriptiona 40.5 12 0.00041 30.2 1.9 62 323-386 14-76 (126)
347 3iuo_A ATP-dependent DNA helic 40.4 22 0.00074 28.6 3.5 33 342-374 31-64 (122)
348 3f8m_A GNTR-family protein tra 40.3 62 0.0021 29.1 7.0 61 322-387 16-77 (248)
349 3c7j_A Transcriptional regulat 40.1 33 0.0011 30.7 5.1 62 322-385 28-89 (237)
350 2ff4_A Probable regulatory pro 40.1 1.9E+02 0.0065 27.7 10.9 62 130-197 174-235 (388)
351 2h09_A Transcriptional regulat 39.1 1E+02 0.0034 25.0 7.7 45 342-389 53-97 (155)
352 1z6r_A MLC protein; transcript 39.0 34 0.0011 33.2 5.3 44 332-375 19-62 (406)
353 2wte_A CSA3; antiviral protein 38.9 54 0.0019 29.6 6.3 46 341-388 164-209 (244)
354 3c57_A Two component transcrip 37.9 36 0.0012 25.7 4.2 37 331-369 32-68 (95)
355 2fxa_A Protease production reg 37.8 33 0.0011 29.9 4.6 48 341-388 60-110 (207)
356 2wv0_A YVOA, HTH-type transcri 37.7 76 0.0026 28.4 7.2 63 323-387 13-76 (243)
357 1pc2_A Mitochondria fission pr 37.6 1.8E+02 0.006 24.2 11.1 63 130-196 35-100 (152)
358 3jw4_A Transcriptional regulat 37.5 33 0.0011 27.6 4.3 43 342-384 56-98 (148)
359 1z05_A Transcriptional regulat 36.9 41 0.0014 32.9 5.6 44 332-375 42-85 (429)
360 2lkp_A Transcriptional regulat 36.7 1.4E+02 0.0048 22.8 8.5 35 342-376 44-78 (119)
361 1okr_A MECI, methicillin resis 36.4 1.2E+02 0.004 23.3 7.4 38 341-378 22-63 (123)
362 4b8x_A SCO5413, possible MARR- 36.3 56 0.0019 26.5 5.6 43 340-382 48-90 (147)
363 2zkz_A Transcriptional repress 36.3 1.3E+02 0.0044 22.5 7.3 36 342-378 40-75 (99)
364 2rnj_A Response regulator prot 36.2 42 0.0014 24.9 4.4 29 341-369 42-70 (91)
365 3sxy_A Transcriptional regulat 36.0 58 0.002 28.4 5.9 62 323-386 15-76 (218)
366 1je8_A Nitrate/nitrite respons 36.0 45 0.0015 24.3 4.4 29 341-369 34-62 (82)
367 3pvv_A Chromosomal replication 36.0 91 0.0031 24.0 6.3 45 287-332 54-98 (101)
368 2vn2_A DNAD, chromosome replic 35.6 46 0.0016 26.7 4.7 36 344-379 52-87 (128)
369 2p7v_B Sigma-70, RNA polymeras 35.5 29 0.001 24.1 3.1 29 341-369 23-51 (68)
370 1fse_A GERE; helix-turn-helix 35.3 48 0.0016 23.0 4.4 29 341-369 24-52 (74)
371 1ucr_A Protein DSVD; dissimila 34.7 36 0.0012 25.1 3.4 35 340-374 18-53 (78)
372 3ihu_A Transcriptional regulat 34.6 91 0.0031 27.2 7.0 62 323-386 19-80 (222)
373 1x3u_A Transcriptional regulat 34.5 50 0.0017 23.3 4.4 29 341-369 29-57 (79)
374 2qx5_A Nucleoporin NIC96; mRNA 34.5 2.9E+02 0.0098 28.8 11.7 119 23-153 423-564 (661)
375 2cru_A Programmed cell death p 34.1 18 0.0006 29.1 1.9 49 328-378 37-87 (118)
376 4a0z_A Transcription factor FA 34.0 49 0.0017 28.7 5.0 46 325-370 8-53 (190)
377 3e4b_A ALGK; tetratricopeptide 33.9 3.3E+02 0.011 26.2 13.2 92 130-236 179-279 (452)
378 1nzn_A CGI-135 protein, fissio 33.8 1.7E+02 0.0057 23.5 7.8 64 10-78 38-105 (126)
379 2gqq_A Leucine-responsive regu 33.8 10 0.00035 31.9 0.5 42 334-375 18-59 (163)
380 3i71_A Ethanolamine utilizatio 33.7 81 0.0028 21.8 4.8 43 333-375 7-50 (68)
381 3edp_A LIN2111 protein; APC883 33.6 60 0.0021 28.9 5.7 64 323-388 12-76 (236)
382 2k9m_A RNA polymerase sigma fa 33.6 28 0.00095 28.4 3.1 26 341-366 37-62 (130)
383 1pc2_A Mitochondria fission pr 32.9 67 0.0023 26.8 5.4 64 10-78 35-102 (152)
384 1zbp_A Hypothetical protein VP 32.7 1.8E+02 0.006 26.8 8.6 57 16-79 7-63 (273)
385 2fu4_A Ferric uptake regulatio 32.7 93 0.0032 22.3 5.7 43 333-375 21-70 (83)
386 2uy1_A Cleavage stimulation fa 31.2 3.9E+02 0.013 26.3 12.0 118 107-239 199-351 (493)
387 3ri2_A Transcriptional regulat 30.9 2E+02 0.0068 22.8 10.2 63 315-379 7-74 (123)
388 2qc0_A Uncharacterized protein 30.7 2.6E+02 0.0088 26.7 10.1 41 343-384 311-351 (373)
389 3eet_A Putative GNTR-family tr 30.6 78 0.0027 28.9 6.0 63 323-387 32-95 (272)
390 3ryp_A Catabolite gene activat 30.0 50 0.0017 28.0 4.4 42 343-388 167-208 (210)
391 4b4t_O 26S proteasome regulato 29.8 2.3E+02 0.008 27.2 9.7 58 130-187 130-189 (393)
392 1naf_A ADP-ribosylation factor 29.8 2.5E+02 0.0085 23.5 11.2 100 27-147 20-121 (158)
393 4gns_B Protein CSD3, chitin bi 29.8 3.4E+02 0.012 28.7 11.5 87 142-236 300-398 (754)
394 3dkw_A DNR protein; CRP-FNR, H 29.8 50 0.0017 28.4 4.4 45 342-390 177-221 (227)
395 3hug_A RNA polymerase sigma fa 29.4 62 0.0021 23.9 4.3 29 341-369 51-79 (92)
396 2oz6_A Virulence factor regula 29.2 73 0.0025 26.8 5.3 42 343-388 164-205 (207)
397 3u64_A Protein TP_0956; tetrat 29.0 3.6E+02 0.012 25.1 10.5 61 174-240 206-272 (301)
398 2hs5_A Putative transcriptiona 28.8 1E+02 0.0036 27.3 6.5 62 323-386 31-92 (239)
399 2b1e_A Exocyst complex compone 28.6 1.4E+02 0.0049 30.4 8.2 68 300-368 496-563 (564)
400 1eij_A Hypothetical protein MT 28.5 30 0.001 25.7 2.2 46 332-379 11-58 (80)
401 2l0k_A Stage III sporulation p 28.3 48 0.0016 25.3 3.4 32 332-364 10-41 (93)
402 4gns_B Protein CSD3, chitin bi 28.2 2.8E+02 0.0096 29.4 10.5 41 107-153 357-397 (754)
403 3hrs_A Metalloregulator SCAR; 27.8 92 0.0031 27.2 5.8 54 333-389 10-63 (214)
404 3ulq_B Transcriptional regulat 27.7 71 0.0024 23.8 4.3 28 342-369 43-70 (90)
405 2p4w_A Transcriptional regulat 27.4 2.1E+02 0.0071 24.8 8.0 38 341-378 26-63 (202)
406 3bwg_A Uncharacterized HTH-typ 27.2 85 0.0029 27.9 5.5 61 324-386 9-70 (239)
407 3la7_A Global nitrogen regulat 27.1 77 0.0026 27.7 5.3 45 342-390 192-236 (243)
408 1j1v_A Chromosomal replication 27.1 1.2E+02 0.0042 22.8 5.6 43 287-329 50-92 (94)
409 1hw1_A FADR, fatty acid metabo 26.9 95 0.0032 27.2 5.8 62 323-386 10-72 (239)
410 3t72_q RNA polymerase sigma fa 26.9 76 0.0026 24.3 4.4 28 342-369 38-65 (99)
411 1zyb_A Transcription regulator 26.5 74 0.0025 27.6 5.0 44 342-389 185-228 (232)
412 1ku3_A Sigma factor SIGA; heli 26.5 50 0.0017 23.2 3.1 28 342-369 29-56 (73)
413 1nd9_A Translation initiation 26.3 50 0.0017 21.2 2.9 25 343-367 2-26 (49)
414 2o8x_A Probable RNA polymerase 26.3 48 0.0016 22.7 3.0 28 341-368 29-56 (70)
415 1tc3_C Protein (TC3 transposas 26.1 44 0.0015 20.7 2.5 28 342-369 20-47 (51)
416 2fh0_A Hypothetical 16.0 kDa p 25.1 33 0.0011 25.5 1.9 45 332-378 9-55 (81)
417 3cuq_B Vacuolar protein-sortin 24.9 1.4E+02 0.0047 26.5 6.3 43 342-386 167-209 (218)
418 1ldd_A APC2WHB, anaphase promo 24.6 1.2E+02 0.0041 22.0 4.8 42 334-375 13-65 (74)
419 3dv8_A Transcriptional regulat 24.5 77 0.0026 26.9 4.6 43 343-389 169-211 (220)
420 3l7w_A Putative uncharacterize 24.3 1.9E+02 0.0065 22.0 6.5 35 348-382 31-65 (108)
421 1bia_A BIRA bifunctional prote 24.2 82 0.0028 29.5 5.0 44 331-374 7-50 (321)
422 3eqx_A FIC domain containing t 24.0 1.1E+02 0.0036 29.6 5.8 42 333-374 301-342 (373)
423 2fbk_A Transcriptional regulat 23.8 70 0.0024 26.7 4.1 46 343-388 86-134 (181)
424 2vkj_A TM1634; membrane protei 23.7 2.2E+02 0.0076 21.5 6.1 50 126-176 52-101 (106)
425 1ozj_A SMAD 3; MAD homology do 23.3 1.3E+02 0.0046 24.8 5.4 49 24-73 10-58 (144)
426 1tty_A Sigma-A, RNA polymerase 23.2 59 0.002 23.8 3.1 28 342-369 37-64 (87)
427 3k2z_A LEXA repressor; winged 23.0 1.1E+02 0.0037 26.2 5.3 34 343-376 24-57 (196)
428 2vxz_A Pyrsv_GP04; viral prote 22.8 1.3E+02 0.0043 25.2 5.1 43 331-374 13-55 (165)
429 4ev0_A Transcription regulator 22.6 59 0.002 27.6 3.4 44 342-389 162-205 (216)
430 2di3_A Bacterial regulatory pr 22.6 1.4E+02 0.0048 26.2 6.1 65 323-387 7-74 (239)
431 3o48_A Mitochondria fission 1 22.4 1.9E+02 0.0065 23.6 6.1 76 10-94 43-122 (134)
432 2pjp_A Selenocysteine-specific 22.4 91 0.0031 24.5 4.3 34 343-376 20-53 (121)
433 3e97_A Transcriptional regulat 22.4 62 0.0021 27.9 3.6 44 342-389 174-217 (231)
434 3kp1_E D-ornithine aminomutase 22.3 1.9E+02 0.0065 23.1 5.9 60 313-373 17-77 (121)
435 2zcw_A TTHA1359, transcription 22.2 62 0.0021 27.3 3.5 43 343-389 146-188 (202)
436 3mzy_A RNA polymerase sigma-H 22.0 83 0.0028 25.2 4.1 29 340-368 121-149 (164)
437 3d0s_A Transcriptional regulat 21.8 64 0.0022 27.7 3.5 43 343-389 177-219 (227)
438 1klx_A Cysteine rich protein B 21.8 2.8E+02 0.0097 21.5 7.9 59 130-196 60-126 (138)
439 1ft9_A Carbon monoxide oxidati 21.7 65 0.0022 27.6 3.6 32 343-374 163-194 (222)
440 2gau_A Transcriptional regulat 21.6 65 0.0022 27.8 3.6 44 342-389 179-222 (232)
441 3iwz_A CAP-like, catabolite ac 21.3 65 0.0022 27.6 3.5 42 343-388 187-228 (230)
442 2wpv_A GET4, UPF0363 protein Y 21.3 5E+02 0.017 24.1 22.2 33 281-313 243-275 (312)
443 4a5x_A MITD1, MIT domain-conta 21.2 1.6E+02 0.0054 21.9 5.1 35 205-239 13-47 (86)
444 1b89_A Protein (clathrin heavy 21.2 3.3E+02 0.011 26.9 8.9 65 130-195 151-235 (449)
445 3b02_A Transcriptional regulat 21.1 54 0.0019 27.5 2.8 43 343-389 139-181 (195)
446 3lmm_A Uncharacterized protein 21.0 20 0.0007 37.0 0.0 43 331-373 518-560 (583)
447 2d74_B Translation initiation 20.9 2.8E+02 0.0095 23.0 7.0 46 345-395 48-93 (148)
448 2fmy_A COOA, carbon monoxide o 20.9 68 0.0023 27.4 3.5 43 342-388 166-209 (220)
449 2e9h_A EIF-5, eukaryotic trans 20.7 3.4E+02 0.012 22.6 7.6 48 345-395 45-92 (157)
450 1p4w_A RCSB; solution structur 20.2 98 0.0034 23.5 3.9 28 342-369 48-75 (99)
No 1
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=100.00 E-value=4.2e-78 Score=603.62 Aligned_cols=383 Identities=55% Similarity=0.911 Sum_probs=343.8
Q ss_pred CchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHH
Q 014555 38 SSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWT 117 (422)
Q Consensus 38 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~ 117 (422)
++++.++.+|.++.+|+++|++.|+++++.++++.+++|++.++|++++|+||+++|.++.+|++.+.++++|.++++||
T Consensus 10 ~~~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a 89 (394)
T 3txn_A 10 NDEERIRIKEQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA 89 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 45667999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 118 RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 118 ~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
++++|+|||++|+.||+++|++.|+|.+|++++++++.+|++.||+.+++|+++.++++|+..+|+++++++|++|+++.
T Consensus 90 ~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~ 169 (394)
T 3txn_A 90 KQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTA 169 (394)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCchhhHHHHHHHHHHhc-hhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccc
Q 014555 198 NAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGL 276 (422)
Q Consensus 198 ~~i~~~~~i~a~i~~~~g~~~~-~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~ 276 (422)
+++||||+++|.+++|+|++|+ .+|||++|+++|+|+|++|++.+++++.++++|++||+|++++++++++++.++.+.
T Consensus 170 ~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~r~el~~~l~~~~~~ 249 (394)
T 3txn_A 170 NAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQSDDVNQLVSGKLAI 249 (394)
T ss_dssp HHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHSHHHH
T ss_pred ccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCCHHHHHHHhcccccc
Confidence 9999999999999999999999 999999999999999999999999999999999999999999999999988777666
Q ss_pred cccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCC
Q 014555 277 QYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP 356 (422)
Q Consensus 277 ~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~ 356 (422)
.|.+|+++||..|+.+|+++++..|..+++.|++.|..||++++|+..|+++|+++||+++++||++|+|++||+.||+|
T Consensus 250 ~~~~pei~~l~~L~~a~~~~dl~~f~~iL~~~~~~l~~D~~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls 329 (394)
T 3txn_A 250 TYSGRDIDAMKSVAEASHKRSLADFQAALKEYKKELAEDVIVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP 329 (394)
T ss_dssp TTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHSTTTTTTSHHHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC
T ss_pred ccCCccHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC
Confidence 78899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014555 357 IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420 (422)
Q Consensus 357 ~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~~l~~~~~~~ 420 (422)
++++|++|++||.+|+|+|+|||++|+|++.++++++.+|+.+++.+++++++||.||+|++++
T Consensus 330 ~~evE~~L~~lI~dg~I~a~IDq~~giv~~~~~~~r~~~y~~ale~l~~ls~vVd~L~~~~~~~ 393 (394)
T 3txn_A 330 MPQVEKKLSQMILDKKFSGILDQGEGVLIVFEETPVDKTYERVLETIQSMGKVVDTLYQKAKKL 393 (394)
T ss_dssp HHHHHHHHHHHHHTTSSCEEEETTTTEEEECCC-------------------------------
T ss_pred HHHHHHHHHHHHHCCCeeEEEcCCCCEEEECCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999986
No 2
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.8e-65 Score=521.66 Aligned_cols=403 Identities=14% Similarity=0.159 Sum_probs=333.2
Q ss_pred cchHHHHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 9 TTDSIAQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 9 ~~~~~ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
+.+++|++++++|+++|++.|..++|+++.++ +..|++|++.+++++|++.|+|+.+++++..|++++|+ +|+++++|
T Consensus 19 ~~~~~~~~l~~~~~~~a~e~ll~lEK~~r~~~-d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~ 96 (445)
T 4b4t_P 19 EEFPKIDSLAQNDCNSALDQLLVLEKKTRQAS-DLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYM 96 (445)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHSSSC-STTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhcc-chhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHH
Confidence 58889999999999999999999999987655 48899999999999999999999999999999999995 59999999
Q ss_pred HHHHHHHhhcCCCCh-hHHHHHHHHHHHHHHhcchhHH---hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 89 VRGIIDAVAKIPGTS-ELQIALCKEMVQWTRAEKRTFL---RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 89 v~~~l~~~~~~~~~~-~~~~~l~~~~i~~~~~~~r~~l---r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
|+.+++++++.|+.. ..++.+++.+.. .++||+|| |+||+.+||++|++.|+|.+|+++|+++++|+++.|++.
T Consensus 97 V~~~~~~l~~~~~~d~~~~~~~i~~l~~--vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 97 IQKVMEYLKSSKSLDLNTRISVIETIRV--VTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp HHHHHHHHHHHCTTHHHHHHHHHHCCSS--SSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHHH--HhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 999999999888642 334555444433 35899999 999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP 244 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~ 244 (422)
.++|++++|+|+|+..+|+.+|+.++++++....+.+++|.+++.|+.|+|++|+++++|.+|+++|+++|.+|+..+++
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~ 254 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDE 254 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCH
Confidence 99999999999999999999999999999887777888999999999999999999999999999999999999988887
Q ss_pred h-HHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhH-----
Q 014555 245 R-AVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIV----- 318 (422)
Q Consensus 245 ~-~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l----- 318 (422)
. +..+++++++|.+|++..++.+.++++... ....+++++++.|+++|.++++..|+.+++.|...+..|+++
T Consensus 255 ~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~-~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~~~~~~~~~~ 333 (445)
T 4b4t_P 255 AKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN-DNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNEDDLAFGGEA 333 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH-HSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTTCCSSCCCSC
T ss_pred HHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh-cccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcccchhhhcch
Confidence 4 677889999999999988887776654322 224578999999999999999999999999999999999877
Q ss_pred -HHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHH
Q 014555 319 -HRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYP 397 (422)
Q Consensus 319 -~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~ 397 (422)
..||..|+++|++|||+++++||++|+|++||++||+|++++|..+++||.+|+|+|+|||++|+|+|.++.+.+ +
T Consensus 334 ~~~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~~~evE~~ls~mI~~g~i~akIDq~~giV~F~~~~~~~---~ 410 (445)
T 4b4t_P 334 NKHHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLTESQTETYISDLVNQGIIYAKVNRPAKIVNFEKPKNSS---Q 410 (445)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCEEETTTTEEEC-----------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEEEcCCCCEEEECCCCChH---H
Confidence 789999999999999999999999999999999999999999999999999999999999999999998876653 6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhh
Q 014555 398 ATLETISNMGKVVDSLFVRSAKI 420 (422)
Q Consensus 398 ~l~~~~~~l~~l~~~l~~~~~~~ 420 (422)
.+++|..+++.+++.+ +++..+
T Consensus 411 ~l~~W~~~i~~l~~~v-~k~~~l 432 (445)
T 4b4t_P 411 LLNEWSHNVDELLEHI-ETIGHL 432 (445)
T ss_dssp -----------------------
T ss_pred HHHHHHHHHHHHHHHH-HHHHHH
Confidence 7889999999999764 555554
No 3
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-53 Score=429.77 Aligned_cols=417 Identities=42% Similarity=0.671 Sum_probs=355.7
Q ss_pred CCCCccchHHHHHhhcC-ChHHHHHHHHhhcCCCCCc----------hHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHH
Q 014555 4 SYLPATTDSIAQAKEAS-NPSDAISMLYRVLDDPSSS----------SEALRVKELAITELSDLLRQENRAQDLCNLLTQ 72 (422)
Q Consensus 4 ~~~~~~~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~ 72 (422)
|+.|+..+++|+.+.+. ++++|++.|+.+++..+.. .....+.++++.+|+.+|++.|+|+++.+++..
T Consensus 1 ~s~p~~~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~ 80 (434)
T 4b4t_Q 1 MSLPGSKLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPH 80 (434)
T ss_dssp CCSTTHHHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34567799999987655 7999999999999765321 234688999999999999999999999999999
Q ss_pred hchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHH
Q 014555 73 LRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTS 152 (422)
Q Consensus 73 l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~ 152 (422)
+.++++.+++++++++|+.+++.+...++..+..++++..++.|+.+.++.++++++..+||.+|.+.|+|.+|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~ 160 (434)
T 4b4t_Q 81 STEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALIND 160 (434)
T ss_dssp THHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHH
Confidence 99999999999999999999999999888778889999999999998888999999999999999999999999999999
Q ss_pred HHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHH
Q 014555 153 LVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 153 l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ 232 (422)
++.++++.+++...+++++.++++|+..||+.+|+.+++++.++..++++||.+++.++.+.|.+|..+++|.+|+++|.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~ 240 (434)
T 4b4t_Q 161 LLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFF 240 (434)
T ss_dssp HHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred HHhhhhhccCC----hhHHHHHHHHHHHHHHhcCccchhhhhcccccccc-cCcchHHHHHHHHHHhcCCHHHHHHHHHH
Q 014555 233 EAFEAFNALED----PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQY-VGPELDAMKAVADAHSKRSLKLFETALRD 307 (422)
Q Consensus 233 ea~~~~~~~~~----~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~-~~~~i~~~~~L~~af~~~dl~~f~~~l~~ 307 (422)
++|++|...++ +.+..+++|+++|.++.+..++...++.++....+ .+++++++..+..+|.++++..|+..+..
T Consensus 241 ~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~ 320 (434)
T 4b4t_Q 241 ESFESYHNLTTHNSYEKACQVLKYMLLSKIMLNLIDDVKNILNAKYTKETYQSRGIDAMKAVAEAYNNRSLLDFNTALKQ 320 (434)
T ss_dssp HHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHCSSSSTTCCCHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhhhhhhhhHHHHHHHHHHHHHHHHhccchhHHHhHHHHHHHHHHhcchhhhHHHHHHHHHHhhhHHHHHHHHHH
Confidence 99999987765 46788899999999999887776655677666555 57889999999999999999999999999
Q ss_pred hHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 308 FKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 308 ~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+...+..|+++..|+..+.++++++++.++++||++|++++||+.||+|++++|..|++||.+|.|.|+|||++|+|++.
T Consensus 321 ~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~y~~i~l~~la~~l~~~~~~~E~~l~~lI~~~~i~a~id~~~g~v~~~ 400 (434)
T 4b4t_Q 321 YEKELMGDELTRSHFNALYDTLLESNLCKIIEPFECVEISHISKIIGLDTQQVEGKLSQMILDKIFYGVLDQGNGWLYVY 400 (434)
T ss_dssp THHHHTCSHHHHHHHHHHHHHHHHHHHHHHHSSCSCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSSCCEEETTTTEEECC
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHhCcCHHHHHHHHHHHHhCCCcceecccccCeEeeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014555 388 EDPKADAIYPATLETISNMGKVVDSLFVRSAKI 420 (422)
Q Consensus 388 ~~~~~~~~~~~l~~~~~~l~~l~~~l~~~~~~~ 420 (422)
++++++..|+.++++++++++++|.||+||..|
T Consensus 401 ~~~~~~~~~~~~l~~~~~l~~~vd~L~~ka~~l 433 (434)
T 4b4t_Q 401 ETPNQDATYDSALELVGQLNKVVDQLFEKASVL 433 (434)
T ss_dssp ---------------------------------
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999888999999999999999999999999876
No 4
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.7e-45 Score=372.98 Aligned_cols=372 Identities=13% Similarity=0.111 Sum_probs=279.7
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc--ccchhHHHHHHHHHHHH---
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS--LIPKAKTAKIVRGIIDA--- 95 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~--~~~k~~~~k~v~~~l~~--- 95 (422)
|++-|...|.--..... .+..+|..+.+..++ .+.++...+..+...+....+ ..++.....+++..+.+
T Consensus 23 ~~~la~~~f~l~~~~~~--~~~~~~~~~~l~~~i---k~~~ma~~y~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~ 97 (429)
T 4b4t_R 23 NYEVSEKAFLLTQSKVS--IEQRKEAAEFVLAKI---KEEEMAPYYKYLCEEYLVNNGQSDLEHDEKSDSLNEWIKFDQE 97 (429)
T ss_dssp ---------------------CHHHHHHHHHHHH---HHTCCHHHHHHHHHHSCCCCSCCSSCSHHHHHHHHHTTTTCCS
T ss_pred ChHHHHHHHHhcCCCCC--hhhHHHHHHHHHHHH---HHhCCHHHHHHHHHHHhhcccchhhhhhhhhhhhhhcchHHHH
Confidence 44556555543222222 112345555554444 445665555555555544332 23455555555544332
Q ss_pred -hhcCCCChhHHHHHHHHHHHHHHhcc---hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 96 -VAKIPGTSELQIALCKEMVQWTRAEK---RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 96 -~~~~~~~~~~~~~l~~~~i~~~~~~~---r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
++.++...+.+++.+++.++++.+++ ..|.+. ..+||++|++.||+++|++.+.+++++|.+. ..++++++
T Consensus 98 ~~~~~~~~n~~~l~~l~~~~~~~~~~~~~e~e~~~~--~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~---~~kid~~l 172 (429)
T 4b4t_R 98 LYNELCKKNESKIKELNEKIQKLEEDDEGELEQAQA--WINLGEYYAQIGDKDNAEKTLGKSLSKAIST---GAKIDVML 172 (429)
T ss_dssp SCTTTTCCSSCCHHHHHHHHHHHHHCCSCCCCCSSC--CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCC---CSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCh---HHHHHHHH
Confidence 22233333456888889999886532 224455 6799999999999999999999999988754 57999999
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHH
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLK 251 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lk 251 (422)
.++|+++..+|+..++..+.+++....+.. +|..++.++.|+|+++++.++|.+|+++|+++|.+|+..+.+.+..++.
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~-d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~~ 251 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGG-DWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIAT 251 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCC-CTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCC-CHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHHHH
Confidence 999999999999999999999998887776 8999999999999999999999999999999999999988899999999
Q ss_pred HHHHHHHHhcCccchh-hhhcccccccc--cCcchHHHHHHHHHHhcCCHHHHHH-HHHHhHHhhhcChhHHHhHHHHHH
Q 014555 252 YMLLCKIMVSQADDVA-GIISSKAGLQY--VGPELDAMKAVADAHSKRSLKLFET-ALRDFKAQLEEDPIVHRHLSSLYD 327 (422)
Q Consensus 252 y~vL~~lL~~~~~el~-~ll~~~~~~~~--~~~~i~~~~~L~~af~~~dl~~f~~-~l~~~~~~l~~D~~l~~~~~~L~~ 327 (422)
|++||++++.++.++. .++++.....+ ..|.++++..++.+|.++++..|.. .+..+...+..|+++++|++.|++
T Consensus 252 y~~l~al~~~~r~~l~~~v~~~~~~~~~l~~~p~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~d~~l~~h~~~l~~ 331 (429)
T 4b4t_R 252 YASVTGLFTLERTDLKSKVIDSPELLSLISTTAALQSISSLTISLYASDYASYFPYLLETYANVLIPCKYLNRHADFFVR 331 (429)
T ss_dssp HHHHHHHHTTCHHHHHHSSSSSHHHHHGGGSHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHSTTTTTCTTSTTTHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHhcCHHHHhhccCChhHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhccCHHHHHHHHHHHH
Confidence 9999999999988864 46777766555 3578899999999999999999865 456677789999999999999999
Q ss_pred HHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHH
Q 014555 328 TLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETI 403 (422)
Q Consensus 328 ~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~ 403 (422)
+||+||+.++++||++|+|++||+.||+|++++|+.|++||.+|+|+|+||+++|+|+++++++++..|+.+++++
T Consensus 332 ~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s~~~~E~~L~~lI~~g~l~akID~~~giv~~~~~d~~~~~y~~~i~~g 407 (429)
T 4b4t_R 332 EMRRKVYAQLLESYKTLSLKSMASAFGVSVAFLDNDLGKFIPNKQLNCVIDRVNGIVETNRPDNKNAQYHLLVKQG 407 (429)
T ss_dssp HHHHHHHHHHHHTCSEEEHHHHHHHHTSCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECC---------------
T ss_pred HHHHHHHHHHhHHhceeeHHHHHHHhCcCHHHHHHHHHHHHHcCCeEEEEcCCCCEEEECCCCchhHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998776553
No 5
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.97 E-value=7.4e-30 Score=256.84 Aligned_cols=317 Identities=15% Similarity=0.153 Sum_probs=227.9
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHH----HHHhcccHHHHHHHHHHHHHHHhhhcc------
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAA----LLMESREYTEALTLLTSLVKEVRRLDD------ 162 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~----~~~~~g~~~~A~~~l~~l~~e~~~~~~------ 162 (422)
.+++. .|.+.+..++++++||..... +-. .+++++ ...+..|.++|+++|.++...+...+.
T Consensus 46 ~~~~~-~~~~~~~~~~ly~~fi~~f~~-kin------~L~lv~~~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~ 117 (393)
T 4b4t_O 46 TKFFD-DAKSTPLRLRLYDNFVSKFYD-KIN------QLSVVKYLLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNN 117 (393)
T ss_dssp HHHHC-CCSSCCCCHHHHHHHHHHHHH-HSC------SHHHHHTTHHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCC
T ss_pred HHHHh-ChhcchHHHHHHHHHHHHHHH-hcC------HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhccc
Confidence 34443 455556678999999986542 111 234444 345677999999999998655443221
Q ss_pred -----chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC-CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 163 -----KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI-YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 163 -----~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i-~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
....+.+.+..+++|+..+|...|+.++++++...... ..+|.+++.++.+.|.+|...++|..++.+++..+.
T Consensus 118 ~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~ 197 (393)
T 4b4t_O 118 GSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLS 197 (393)
T ss_dssp CSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 13466677788999999999999999999998776654 357899999999999999999999999999999998
Q ss_pred hhhccC--ChhHHHHHHH-HHHHHHHhcCccchhhhhcccccccc-cCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhh
Q 014555 237 AFNALE--DPRAVFSLKY-MLLCKIMVSQADDVAGIISSKAGLQY-VGPELDAMKAVADAHSKRSLKLFETALRDFKAQL 312 (422)
Q Consensus 237 ~~~~~~--~~~~~~~lky-~vL~~lL~~~~~el~~ll~~~~~~~~-~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l 312 (422)
+++..+ +++....+.| +++|+++++..+....+++.+..... .+|++.|+.+|+++|..|++..|...++.+..
T Consensus 198 ~~~~~~~~~~~~~~~~a~~l~~~all~~~i~~f~eLL~~p~i~~L~~~~~~~~l~~Ll~~f~~g~~~~f~~~~~~~~~-- 275 (393)
T 4b4t_O 198 TLEPSTSITLAERQQLAYDLSISALLGDKIYNFGELLHHPIMETIVNDSNYDWLFQLLNALTVGDFDKFDSLIKVQIS-- 275 (393)
T ss_dssp HHTTSSSCSHHHHHHHHHHHHHHHHHCCSSCSTHHHHHSCCTTSSCSSSSTTHHHHHHHHHHHTCHHHHHHHCCHHHH--
T ss_pred hccccccCCHHHHHHHHHHHHHHHHcCCCCCChHHHhCChHHHHhhcCCchHHHHHHHHHHhcCCHHHHHHHHHHhhh--
Confidence 887543 3455555555 88889998888777776665544334 46889999999999999999999988876644
Q ss_pred hcChhHHHhHHHHHHHHHHHHHHHhh--cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCC
Q 014555 313 EEDPIVHRHLSSLYDTLLEQNLCRLI--EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390 (422)
Q Consensus 313 ~~D~~l~~~~~~L~~~i~~~~l~~i~--~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~ 390 (422)
..|++..|...+.++++..++..++ .+|++|+++.||+.+|+|+++||.++++||.+|.|.|+|||++|+|++.|..
T Consensus 276 -~~~~l~~~~~~l~~kirll~l~~l~~~~~~~~i~f~~ia~~l~i~~~evE~lli~aI~~glI~GkIDQv~~~v~v~~~~ 354 (393)
T 4b4t_O 276 -KIPILAQHESFLRQKICLMTLIETVFVKNIRMLSFEDISKATHLPKDNVEHLVMRAISLGLLKGSIDQVNELVTISWVQ 354 (393)
T ss_dssp -HSHHHHHHHHHHHHHHHHHHHHHHHCSSSCCCEEHHHHHHHHTCCHHHHHHHHHHHHHHSCSSSCEETTTTEECC----
T ss_pred -hCcchhhhHHHHHHHHHHHHHHHHhccCCCCcCcHHHHHHHhCcCHHHHHHHHHHHHHcCCEEEEEcCCCCEEEEEecc
Confidence 4589999999999999999999987 4689999999999999999999999999999999999999999999998854
Q ss_pred ch-------hhHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 014555 391 KA-------DAIYPATLETISNMGKVVDSLFVRSAKI 420 (422)
Q Consensus 391 ~~-------~~~~~~l~~~~~~l~~l~~~l~~~~~~~ 420 (422)
++ ..+.+++.+|..++..+...+-+.++.+
T Consensus 355 pR~~~~~q~~~l~~~L~~W~~~v~~l~~~ve~~~~~i 391 (393)
T 4b4t_O 355 PRIISGDQITKMKDRLVEWNDQVEKLGKKMEARGQSI 391 (393)
T ss_dssp -------------------------------------
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33 3466789999999999999887777654
No 6
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.88 E-value=7.9e-22 Score=200.89 Aligned_cols=217 Identities=14% Similarity=0.119 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc--cCCh
Q 014555 167 VDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA--LEDP 244 (422)
Q Consensus 167 ~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~--~~~~ 244 (422)
.-++-+..|.|+..+++..|..++.++.-..+. .+..-++.|..|.|++++.+++|.+|..+|..|+...+. ....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~--~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~a~g 308 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTD--VSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSKSLG 308 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTT--SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSSCSH
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCccc--CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchhhhh
Confidence 334556789999999999998887766321111 133456899999999999999999999999999975432 2345
Q ss_pred hHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHH
Q 014555 245 RAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSS 324 (422)
Q Consensus 245 ~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~ 324 (422)
.+..++||+|+|.||.+..|+... |... .+ ...+.+|..|++||..||+..|...+++|+..|..|+.. ..+..
T Consensus 309 fr~~a~K~lI~V~LLlG~iP~r~l-f~q~---~l-~~~L~pY~~Lv~Avr~GdL~~F~~~L~~h~~~F~~Dgty-~LI~r 382 (523)
T 4b4t_S 309 FLQQSNKLHCCIQLLMGDIPELSF-FHQS---NM-QKSLLPYYHLTKAVKLGDLKKFTSTITKYKQLLLKDDTY-QLCVR 382 (523)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCHHH-HTTT---SC-HHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCT-HHHHH
T ss_pred HHHHHHHHHHhHHhhcCCCCChHH-hhch---hH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHhcceeccCChh-HHHHH
Confidence 788999999999999988776543 3321 11 134778999999999999999999999999999999965 46788
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHhCCC-hHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc
Q 014555 325 LYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK 391 (422)
Q Consensus 325 L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~ 391 (422)
|+..++.++++++..+|++|++.+||..++++ ++++|..+++||.+|.|.|+||+.+|+|++.+..+
T Consensus 383 Lr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iVAkmI~dG~I~A~Idh~~g~v~ske~~d 450 (523)
T 4b4t_S 383 LRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMVSRAIRDGVIEAKINHEDGFIETTELLN 450 (523)
T ss_dssp HHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHHHHHHHHTSSCCEECTTTCCEECCSSSC
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHHHHHHHcCCceEEEecCCCEEEeCcccc
Confidence 99999999999999999999999999999996 78999999999999999999999999999976544
No 7
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=99.83 E-value=4.4e-20 Score=168.79 Aligned_cols=175 Identities=20% Similarity=0.220 Sum_probs=144.5
Q ss_pred CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcc
Q 014555 203 PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE 282 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~ 282 (422)
|..-+..++.+.|++++.+++|.+|..+|.+||..++..+...+..+|+|++.+.|+.+..|.... +. +|..
T Consensus 9 ~~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~~~k~~IL~yLIp~~Ll~G~iP~~~l-l~-----~~~~-- 80 (203)
T 3t5x_A 9 STAQRVTYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQKNKRMILIYLLPVKMLLGHMPTVEL-LK-----KYHL-- 80 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTTCEECHHH-HH-----HTTC--
T ss_pred CHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHcCCCCCHHH-hh-----hCch--
Confidence 455667899999999999999999999999999998876667889999999999999988665432 32 2322
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhc------ccccccchhHHHHhC--
Q 014555 283 LDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIE------PYSRVEIAHIAELIE-- 354 (422)
Q Consensus 283 i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~------pYs~I~l~~la~~l~-- 354 (422)
.+|..|++|+.+||+..|...+++|+..|..|+.. .+.++++..+++.+++ +|++|+++.++..++
T Consensus 81 -~~y~~L~~Avr~Gdl~~f~~~l~~~~~~f~~~~~~-----lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~ 154 (203)
T 3t5x_A 81 -MQFAEVTRAVSEGNLLLLHEALAKHEAFFIRCGIF-----LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFM 154 (203)
T ss_dssp -GGGHHHHHHHHHTCHHHHHHHHHHTHHHHHHHTCH-----HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHT
T ss_pred -hHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHCChH-----HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhc
Confidence 24789999999999999999999998776666643 3445566655555554 799999999999995
Q ss_pred ----CChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc
Q 014555 355 ----LPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK 391 (422)
Q Consensus 355 ----l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~ 391 (422)
++.+|||-.|++||.+|.|+|+||+.+|++++...++
T Consensus 155 ~~~~~~~~evE~ila~lI~~G~Ikg~I~~~~~~lVlsk~~p 195 (203)
T 3t5x_A 155 QVEDVDIDEVQCILANLIYMGHVKGYISHQHQKLVVSKQNP 195 (203)
T ss_dssp TCTTCCHHHHHHHHHHHHHHTSSCEEEETTTTEEEECSSCS
T ss_pred CCCCCCHHHHHHHHHHHHHcCceEEEEcccccEEEECCCCC
Confidence 4899999999999999999999999999999976543
No 8
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.1e-17 Score=164.83 Aligned_cols=326 Identities=10% Similarity=0.074 Sum_probs=217.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh---HHHHHHHHHHHHhhcCCCCh--h-H--HHHHHHHHH----HH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA---KTAKIVRGIIDAVAKIPGTS--E-L--QIALCKEMV----QW 116 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~---~~~k~v~~~l~~~~~~~~~~--~-~--~~~l~~~~i----~~ 116 (422)
.+..+++.+.=.++|..+..+++...++..++... .+=+.+..++..+...-... + . -+.++..+. .+
T Consensus 44 ~l~~~ve~~~~~~~w~~f~~~v~~yl~~~rdv~~~sl~~s~dll~~~~~~l~~a~~~~~~~wi~~l~p~~~~~~~~l~~~ 123 (455)
T 3t5v_B 44 QLETFVEQHPAMPNDTRFKIMCTSFLNYARDVDPWSAWSSSDLIFEFYQCLINCLINDNAPHIEMLIPVATRETEFIINL 123 (455)
T ss_dssp HHHHHHHHSTTCCSCHHHHHHHHHHHHHHHHCCTTCSSTTHHHHHHHHHHHHTTSSSTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHcCCCCchHHHhHHHHHHHHHHHHHH
Confidence 33344443332288999888888888887555321 22344444444444322111 1 1 222222222 22
Q ss_pred HHhcchhHHhhHHHHHHHHHH-HhcccHHHHHHHHHHHHHHHhh--h-c-------cchhHHHHHHHHHHHHHhhCCHHH
Q 014555 117 TRAEKRTFLRQRVEARLAALL-MESREYTEALTLLTSLVKEVRR--L-D-------DKLLLVDIDLLESKLHFSLRNLPK 185 (422)
Q Consensus 117 ~~~~~r~~lr~~l~~~La~~~-~~~g~~~~A~~~l~~l~~e~~~--~-~-------~~~~~~e~~l~~~~~~~~~~n~~k 185 (422)
+..- .......- .+....++|+.++.++-.-|.. . + .+...+-+.-.-.++|+..++..-
T Consensus 124 a~~l---------D~~~~~~~~~~~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~kk~~~l~l~n~L~kiYFkl~~~~l 194 (455)
T 3t5v_B 124 AGKL---------DSFHLQLHTRSHQFLSHISSILSRLFNSIKPPRGNASSTNIPGKQRILLYLVNKLNNIYFRIESPQL 194 (455)
T ss_dssp HHHH---------HHTHHHHTCCTTHHHHHHHHHHHHHHHHCCCC----CCSSCCHHHHHHHHHHHHHHHHHHHSSCCTT
T ss_pred HHHh---------hhhHhhhcccchhHHHHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHHHcCCHHH
Confidence 2111 11111000 0122467777777776554432 1 1 122233344445689999999999
Q ss_pred HHHHHHHHHHhhc----cCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh-hhc-cC----ChhHHHHHHHHHH
Q 014555 186 AKAALTAARTAAN----AIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA-FNA-LE----DPRAVFSLKYMLL 255 (422)
Q Consensus 186 ak~~l~~a~~~~~----~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~-~~~-~~----~~~~~~~lky~vL 255 (422)
++.++........ +.+ |..-+..|+.|.|++++.+++|.+|..+|.+||.. .+. .+ ...+..+++|+|.
T Consensus 195 ckni~k~i~~~~~~p~~~~~-p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~~~~~~~~~n~~~ILkyLIp 273 (455)
T 3t5v_B 195 CSNIFKNFQPKSMLAHFNEY-QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLPLTNQAITRNGTRILNYMIP 273 (455)
T ss_dssp HHHHHHTHHHHCCCSCGGGS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCcChhhC-CccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCccccchhhhhHHHHHHHHHHH
Confidence 9988865544321 122 44566789999999999999999999999999998 443 22 2466789999999
Q ss_pred HHHHhcCccchhhhhcccccccccCcchHH-HHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHH
Q 014555 256 CKIMVSQADDVAGIISSKAGLQYVGPELDA-MKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNL 334 (422)
Q Consensus 256 ~~lL~~~~~el~~ll~~~~~~~~~~~~i~~-~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l 334 (422)
+.|+.+..|+..- +.. ++ ++.+.+ |..|++|++.||+..|..++++|+..|..++.+-..+..++..+...-+
T Consensus 274 v~LLlG~~P~~~l-l~k----~~-~~~L~~~y~~L~~AVr~Gdl~~F~~~L~~~~~~f~~~gily~LlerLr~~v~RnLi 347 (455)
T 3t5v_B 274 TGLILGKMVKWGP-LRP----FL-SQETIDNWSVLYKHVRYGNIQGVSLWLRQNERHLCARQLLIVLLEKLPMVTYRNLI 347 (455)
T ss_dssp HHHHTTCCBCHHH-HGG----GS-CHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCHHH-Hcc----cc-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999988665432 332 22 366776 8899999999999999999999999999998754455555555554444
Q ss_pred HHh----hccc--ccccchhHHHHhC---------------------CChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 335 CRL----IEPY--SRVEIAHIAELIE---------------------LPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 335 ~~i----~~pY--s~I~l~~la~~l~---------------------l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+++ +.+| ++|+++.++..++ ++.+|||-.|++||.+|.|+|.||+.+|++++.
T Consensus 348 rkv~~~~~~~~~~srI~l~~i~~aL~~~~~~~~~~~~~~~~~~~~~~~~~devEcIlA~LI~~G~IkGyIsh~~~~lVlS 427 (455)
T 3t5v_B 348 KTVIKSWTTEWGQNKLPYSLIERVLQLSIGPTFEDPGAQEITIYNGIHSPKNVENVLVTLINLGLLRANCFPQLQLCVVK 427 (455)
T ss_dssp HHHHHHHTTTTCCCEEEHHHHHHHHHHHHCCCTTSTTCCCCCTTTSSCCSSCHHHHHHHHHHHTSCCEEEETTTTEEEEC
T ss_pred HHHHHHHHhcCCCCeeeHHHHHHHHhhccCccccccccccccccccCCCHHHHHHHHHHHHHcCCeEEEEecCCCEEEEC
Confidence 444 6678 8999999999987 578999999999999999999999999999998
Q ss_pred cCC
Q 014555 388 EDP 390 (422)
Q Consensus 388 ~~~ 390 (422)
+..
T Consensus 428 K~~ 430 (455)
T 3t5v_B 428 KTT 430 (455)
T ss_dssp CCS
T ss_pred CCC
Confidence 773
No 9
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=99.73 E-value=1.4e-18 Score=135.47 Aligned_cols=73 Identities=26% Similarity=0.349 Sum_probs=69.1
Q ss_pred HhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCch
Q 014555 320 RHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKA 392 (422)
Q Consensus 320 ~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~ 392 (422)
.||..|++++++|||+.+++||++|++++||++|++|++++|..|++||.+|+|.|+|||++|+|+|.++++.
T Consensus 7 ~~~~~L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls~~~vE~~ls~mI~~~~l~akIDq~~g~V~f~~~e~~ 79 (84)
T 1ufm_A 7 GGSSILDRAVIEHNLLSASKLYNNITFEELGALLEIPAAKAEKIASQMITEGRMNGFIDQIDGIVHFETREAS 79 (84)
T ss_dssp CSSCCCCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSCHHHHHHHHHHHHHTTSSCEEEETTTTEEEECCSSCC
T ss_pred ccHHHHHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcCHHHHHHHHHHHHhCCcEEEEEeCCCCEEEeCCcccC
Confidence 4778899999999999999999999999999999999999999999999999999999999999999876653
No 10
>3chm_A COP9 signalosome complex subunit 7; heat/ARM repeats, winged helix motif, developmental protein, phosphoprotein; 1.50A {Arabidopsis thaliana}
Probab=99.33 E-value=3.3e-12 Score=112.54 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHH
Q 014555 249 SLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDT 328 (422)
Q Consensus 249 ~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~ 328 (422)
.+.-+++.++.+++......++.-+......+++..|+.+|++.|..|++..|...-..+ |-+. +.+.++
T Consensus 25 ~a~~li~~Al~~p~vf~F~eLL~~p~v~~L~~~~~~~~~~LL~iF~~G~~~~y~~~~~~~-------p~L~---~~~~~K 94 (169)
T 3chm_A 25 ALGPLIIEATSHPSLFAFSEILALPNVAQLEGTTDSVYLDLLRLFAHGTWGDYKCNATRL-------PHLS---PDQILK 94 (169)
T ss_dssp GHHHHHHHHHHCTTCCCCHHHHTCHHHHTTTTSTTHHHHHHHHHHHHCCHHHHHHHGGGS-------CCCC---HHHHHH
T ss_pred HHHHHHHHHhcCCCeeehHHHhCChHHHHhcCCChhHHHHHHHHHhcCCHHHHHHhHHhC-------cchH---HHHHHH
Confidence 444688889998887766665544332223455678999999999999999998742211 2222 678899
Q ss_pred HHHHHHHHhhcccccccchhHHHHhCCC-hHHHHHHHH-hhhhcCCceeeeecCCCEEEEecCCchh
Q 014555 329 LLEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEKKLS-QMILDKKFAGTLDQGVGCLIIFEDPKAD 393 (422)
Q Consensus 329 i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~evE~~l~-~mI~~g~i~gkIDq~~g~v~~~~~~~~~ 393 (422)
++...++.++...+.|+++.|++.++++ +++||.+++ ++|..|.|.|+|||++++|+++|..+|+
T Consensus 95 lrlLtL~sLa~~~~~lsy~~I~~~l~i~~~~evE~lvI~~ai~~gLI~gkiDQ~~~~v~V~~~~~R~ 161 (169)
T 3chm_A 95 LKQLTVLTLAESNKVLPYDTLMVELDVSNVRELEDFLINECMYAGIVRGKLDQLKRCFEVPFAAGRD 161 (169)
T ss_dssp HHHHHHHHHHHHCSEEEHHHHHHHHTCCSHHHHHHHHHHTHHHHTSEEEEEETTTTEEEEEEECCTT
T ss_pred HHHHHHHHHHHhCCCcCHHHHHHHhCCCCHHHHHHHHHHHHHHhCCeEEEEcCcCCEEEEEeecCCc
Confidence 9999999999889999999999999999 999999999 9999999999999999999999976654
No 11
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=98.77 E-value=2.9e-07 Score=85.24 Aligned_cols=195 Identities=10% Similarity=0.126 Sum_probs=130.7
Q ss_pred HhhCCHHHHHHHHHHHHHhhc--cCCCCc-----h--hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc---cCChh
Q 014555 178 FSLRNLPKAKAALTAARTAAN--AIYVPP-----A--QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA---LEDPR 245 (422)
Q Consensus 178 ~~~~n~~kak~~l~~a~~~~~--~i~~~~-----~--i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~---~~~~~ 245 (422)
+..+|+.++...+.+.+.-.. .+. +| . +.-.+++.++++.+..+|.. ++..+......|.. .+++.
T Consensus 18 ~~~~d~~~~~~lL~~lk~~L~~~~~~-~p~~~~~~~~~ar~vyE~~a~~al~~~D~~-~F~~~~~qLk~~Y~~~~~~s~~ 95 (229)
T 4b0z_A 18 YDRKDWNACKKELLKLKVELAKQNLF-VPTSDKEKASFARNVFEYGVLVSIQTCDIE-SFARYASQVIPFYHDSLVPSSR 95 (229)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCS-SCCSCHHHHHHHHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHHHSSCCCCCTT
T ss_pred HHhccHHHHHHHHHHHHHHHHhcCCC-CCCCChHHHHHHHHHHHHHHHHHHHcCCHH-HHHHHHHHHHHHHHccCCCCcc
Confidence 455666666666665542111 111 11 1 22356677777777776665 44444433333332 24456
Q ss_pred HHHHHHHHHHHHHHhcCccchhhhhccccccc--ccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHH
Q 014555 246 AVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ--YVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLS 323 (422)
Q Consensus 246 ~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~--~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~ 323 (422)
...++.|-+|+.++.+..++++..+....... -++|-+.....|.+++..|+|.+|........ .|.....++
T Consensus 96 ~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p-----~~~~~~~~~ 170 (229)
T 4b0z_A 96 MGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCN-----FPEFSYFMK 170 (229)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCC-----CGGGHHHHH
T ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCc-----cchHHHHHH
Confidence 77888899999999888888776544321111 13566777788999999999999998876532 233344567
Q ss_pred HHHHHHHHHHHHHhhcccccccchhHHHHhCCC-hHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 324 SLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-IDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
.|..++|..++..+.+.|.+|+++++++.||++ +++++..+.+- | =.|+ +|.|+|.
T Consensus 171 ~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~---g---w~i~--dg~i~F~ 227 (229)
T 4b0z_A 171 IVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEER---G---WDIR--DGVIYFP 227 (229)
T ss_dssp HHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHH---T---CEEE--TTEEECC
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHc---C---CEEe--CCEEecC
Confidence 899999999999999999999999999999995 78899888772 1 1444 6666664
No 12
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.74 E-value=7.1e-06 Score=76.79 Aligned_cols=228 Identities=13% Similarity=0.056 Sum_probs=161.5
Q ss_pred HHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc-hhHHHHHH
Q 014555 12 SIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP-KAKTAKIV 89 (422)
Q Consensus 12 ~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~-k~~~~k~v 89 (422)
..|..+. ..+.++|++.|...++..+.+ ......++..++..+...|+++...+.+..........+ ........
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVGTED---LKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhCccc---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 3455544 447899999999988865443 235567889999999999999999888877665432221 12223333
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhccc--------------------HHHHHHH
Q 014555 90 RGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESRE--------------------YTEALTL 149 (422)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~--------------------~~~A~~~ 149 (422)
..+-..+....+ .+.-++.+...++.....+........-..++.++...|+ +++|.+.
T Consensus 87 ~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 87 GNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 333333332222 3334666777776654433323333346689999999999 9999999
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHH
Q 014555 150 LTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYS 229 (422)
Q Consensus 150 l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~ 229 (422)
+...+.-.....+......++.....++...|++.+|...+.++........ ++...+.....-|.++...++|..|..
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~ 244 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASE 244 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9888766666556666777888889999999999999999999887765554 556666777788899999999999999
Q ss_pred HHHHHhhhhhccCCh
Q 014555 230 YFFEAFEAFNALEDP 244 (422)
Q Consensus 230 ~f~ea~~~~~~~~~~ 244 (422)
+|-++...+...+++
T Consensus 245 ~~~~al~~~~~~~~~ 259 (338)
T 3ro2_A 245 YYKKTLLLARQLKDR 259 (338)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhcch
Confidence 999988776665554
No 13
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.68 E-value=1.2e-05 Score=77.89 Aligned_cols=228 Identities=12% Similarity=0.044 Sum_probs=161.9
Q ss_pred HHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc-hhHHHHHH
Q 014555 12 SIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP-KAKTAKIV 89 (422)
Q Consensus 12 ~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~-k~~~~k~v 89 (422)
..+..+. ..++++|++.|...++..+.+. .....++..++..++..|+++...+.+........... ........
T Consensus 14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDL---KTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhcCcccH---HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 3455544 4478999999999988654432 24567889999999999999999888877655432221 12222333
Q ss_pred HHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhccc--------------------HHHHHHH
Q 014555 90 RGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESRE--------------------YTEALTL 149 (422)
Q Consensus 90 ~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~--------------------~~~A~~~ 149 (422)
..+-..+....+ .+.-+..+...++.....+........-..++.+|...|+ +++|.+.
T Consensus 91 ~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 169 (406)
T 3sf4_A 91 GNLGNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDF 169 (406)
T ss_dssp HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 333333322222 3334666676666654333223333446689999999999 9999999
Q ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHH
Q 014555 150 LTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYS 229 (422)
Q Consensus 150 l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~ 229 (422)
+...+.-.....+......++.....++...|++.+|...+.++..+..... ++...+.....-|.++...++|..|..
T Consensus 170 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~ 248 (406)
T 3sf4_A 170 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-DKAAERRAYSNLGNAYIFLGEFETASE 248 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 9888776666656666777888889999999999999999999988776655 556666777788899999999999999
Q ss_pred HHHHHhhhhhccCCh
Q 014555 230 YFFEAFEAFNALEDP 244 (422)
Q Consensus 230 ~f~ea~~~~~~~~~~ 244 (422)
+|-++...+...+++
T Consensus 249 ~~~~al~~~~~~~~~ 263 (406)
T 3sf4_A 249 YYKKTLLLARQLKDR 263 (406)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCcCc
Confidence 999998776665554
No 14
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.64 E-value=2.4e-06 Score=80.12 Aligned_cols=220 Identities=12% Similarity=0.063 Sum_probs=139.0
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHccc--------------------HHHHHHHHHHhchhhcc
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENR--------------------AQDLCNLLTQLRPFFSL 79 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~l~~~~~~l~~~~~~ 79 (422)
.++++|++.|...++..+..+ +......++..++.++...|+ ++...+.+.........
T Consensus 97 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 97 GNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 357888888877665321111 122446677888899999888 77777766655443321
Q ss_pred cc-hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q 014555 80 IP-KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVR 158 (422)
Q Consensus 80 ~~-k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~ 158 (422)
.. ..........+-..+... +..+.-++.++..++.....+........-..++.++...|++++|.+.+.+.+.-..
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 254 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 254 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 11 111122222222222211 1123335566666665543332233333356889999999999999999988876665
Q ss_pred hhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 159 RLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 159 ~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...+......++.....++...|++.+|...+.++........ ++...+.....-|.++...|+|..|..+|-++..-+
T Consensus 255 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 255 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 5555566677777788899999999999999998877765554 445556666677888888999999999998887766
Q ss_pred hccC
Q 014555 239 NALE 242 (422)
Q Consensus 239 ~~~~ 242 (422)
.+.+
T Consensus 334 ~~~~ 337 (338)
T 3ro2_A 334 REVG 337 (338)
T ss_dssp ----
T ss_pred Hhhc
Confidence 5443
No 15
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.61 E-value=2e-05 Score=77.10 Aligned_cols=221 Identities=10% Similarity=0.040 Sum_probs=156.2
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc-hhHHHHHHHHHHHHhh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP-KAKTAKIVRGIIDAVA 97 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~-k~~~~k~v~~~l~~~~ 97 (422)
..+.++|++.|...++....+. .....++..++.++...|+++...+.+........... ..........+-..+.
T Consensus 61 ~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 61 AGDCRAGVAFFQAAIQAGTEDL---RTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp TTCHHHHHHHHHHHHHHCCSCH---HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hCcHHHHHHHHHHHHHhcccCh---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 3468999999999988654432 34556889999999999999999888887766542221 1222233333333333
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhccc-----------------HHHHHHHHHHHHHHHhhh
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESRE-----------------YTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~-----------------~~~A~~~l~~l~~e~~~~ 160 (422)
...+ .+.-++.+...++.....+........-..++.+|...|+ +++|.+.+.+.+.-....
T Consensus 138 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~ 216 (411)
T 4a1s_A 138 VMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDL 216 (411)
T ss_dssp HTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 2222 3334666666666554322222223335689999999999 999999998877665555
Q ss_pred ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 161 DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 161 ~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
.+......++.....++...|++.+|...+.++..+..... ++...+.....-|.++...++|..|..+|-++......
T Consensus 217 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 295 (411)
T 4a1s_A 217 GDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG-DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVE 295 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 55566677788889999999999999999999887765544 55566667778889999999999999999999877766
Q ss_pred cCCh
Q 014555 241 LEDP 244 (422)
Q Consensus 241 ~~~~ 244 (422)
.++.
T Consensus 296 ~~~~ 299 (411)
T 4a1s_A 296 LGER 299 (411)
T ss_dssp TTCH
T ss_pred cCCH
Confidence 5554
No 16
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.59 E-value=1.2e-05 Score=78.01 Aligned_cols=222 Identities=12% Similarity=0.067 Sum_probs=152.9
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHccc--------------------HHHHHHHHHHhchhhcc
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENR--------------------AQDLCNLLTQLRPFFSL 79 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~l~~~~~~l~~~~~~ 79 (422)
.++++|++.|...++..+... +......++..++.++...|+ ++...+.+.........
T Consensus 101 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~ 179 (406)
T 3sf4_A 101 GNFDEAIVCCQRHLDISRELN-DKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTA 179 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 367888888887775422111 123456688899999999999 88877777665554322
Q ss_pred cc-hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHh
Q 014555 80 IP-KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVR 158 (422)
Q Consensus 80 ~~-k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~ 158 (422)
.. ..........+-..+... +..+.-++.++..++.....+........-..++.+|...|++++|...+...+.-..
T Consensus 180 ~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 258 (406)
T 3sf4_A 180 LGDRAAQGRAFGNLGNTHYLL-GNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR 258 (406)
T ss_dssp TTCHHHHHHHHHHHHHHHHHH-TBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 21 112222222332222211 1123346667777766544333333333456899999999999999999999877666
Q ss_pred hhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 159 RLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 159 ~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...+......++.....++...|++.+|...+.++..+..... ++...+.....-|.++...|+|..|..+|-++..-+
T Consensus 259 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 259 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELN-DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5555666677888889999999999999999999988776665 455566677778889999999999999999998877
Q ss_pred hccCCh
Q 014555 239 NALEDP 244 (422)
Q Consensus 239 ~~~~~~ 244 (422)
...+++
T Consensus 338 ~~~~~~ 343 (406)
T 3sf4_A 338 REVGDK 343 (406)
T ss_dssp HHTTCH
T ss_pred HHhcCC
Confidence 777664
No 17
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.53 E-value=4.6e-06 Score=81.77 Aligned_cols=222 Identities=9% Similarity=0.010 Sum_probs=149.9
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHccc-----------------HHHHHHHHHHhchhhcccch
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENR-----------------AQDLCNLLTQLRPFFSLIPK 82 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----------------~~~l~~~~~~l~~~~~~~~k 82 (422)
.+.++|++.|...++.....+ +-.....++..++.++...|+ ++...+.+............
T Consensus 140 g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~ 218 (411)
T 4a1s_A 140 GRFDEAAICCERHLTLARQLG-DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGD 218 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHHHHHhh-chHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 357888888887765421111 123556688889999999999 88877776665543322111
Q ss_pred -hHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc
Q 014555 83 -AKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD 161 (422)
Q Consensus 83 -~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~ 161 (422)
.........+-..+....+ .+.-++.++..++.....+........-..++.+|...|++++|...+...+.......
T Consensus 219 ~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 219 RGAQGRACGNLGNTYYLLGD-FQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 1122222222222222222 23345666666665543333223333356899999999999999999998877666555
Q ss_pred cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 162 DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 162 ~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
+......++.....++...|++.+|...+.++..+..... ++...+.....-|.++...|+|..|..+|-++..-+.+.
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG-DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 5556677888889999999999999999999988766654 445556667778889999999999999999998877765
Q ss_pred CCh
Q 014555 242 EDP 244 (422)
Q Consensus 242 ~~~ 244 (422)
+++
T Consensus 377 ~~~ 379 (411)
T 4a1s_A 377 XXX 379 (411)
T ss_dssp HHH
T ss_pred ccc
Confidence 544
No 18
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.50 E-value=5.4e-05 Score=73.98 Aligned_cols=210 Identities=10% Similarity=0.041 Sum_probs=142.6
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc--hhHHHHHHHHHHHHh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP--KAKTAKIVRGIIDAV 96 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~--k~~~~k~v~~~l~~~ 96 (422)
..+.++|++.|...++.....++ -...-.++..++.++...|+++.-.+.+..-.......+ ..........+-..+
T Consensus 116 ~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~ 194 (383)
T 3ulq_A 116 QREYLSAIKFFKKAESKLIFVKD-RIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNF 194 (383)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHH
Confidence 45789999999998876321111 224567889999999999999999888887777664443 222233333333333
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
....+ .+.-++.++..++.+...+........-..++.+|...|++++|.+.+.+.+.-.....+.......+.....+
T Consensus 195 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 273 (383)
T 3ulq_A 195 LDLKQ-YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQI 273 (383)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHH
T ss_pred HHhcC-HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH
Confidence 32222 34446677777776654433333333355899999999999999999999877655554534457788888999
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhc---HHHHHHHHH
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKD---YKTAYSYFF 232 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~d---y~~A~~~f~ 232 (422)
+...|++.+|...+.++..+..... +|...+.+.. -|.++...++ +..|..+|-
T Consensus 274 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~al~~~~ 330 (383)
T 3ulq_A 274 HYKLGKIDKAHEYHSKGMAYSQKAG-DVIYLSEFEF-LKSLYLSGPDEEAIQGFFDFLE 330 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHH-HHHHHTSSCCHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH-HHHHHhCCCcHHHHHHHHHHHH
Confidence 9999999999999999988876665 5566655444 5555666676 555544443
No 19
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.40 E-value=4e-05 Score=72.33 Aligned_cols=198 Identities=14% Similarity=0.097 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHH-HHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKT-AKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~-~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
....+...+..++..|+++.+.+.+..........+.... ......+....... +..+.-++.++..++.....+..+
T Consensus 74 ~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~Ai~~~~~al~~~~~~~~~~ 152 (293)
T 3u3w_A 74 RKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVY 152 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTS-SCHHHHHHHHHHHHHTCCCCSCTT
T ss_pred hHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcc-cCHHHHHHHHHHHHHHhcccccHH
Confidence 3445566778899999999999999887764433222211 11222333333211 112334566666666432222233
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCC
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL-DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVP 203 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~-~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~ 203 (422)
....+-..++.+|...|+|++|...++..+...... .+......++.....+|...|++.+|..++.+|..+..... +
T Consensus 153 ~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~-~ 231 (293)
T 3u3w_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-S 231 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-B
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcC-c
Confidence 333335689999999999999999999998766554 45566777888889999999999999999999988776554 4
Q ss_pred chhhHHHHHHHHHHhchhh-cHHHHHHHHHHHhhhhhccCChh
Q 014555 204 PAQQGTIDLQSGILHAEEK-DYKTAYSYFFEAFEAFNALEDPR 245 (422)
Q Consensus 204 ~~i~a~i~~~~g~~~~~~~-dy~~A~~~f~ea~~~~~~~~~~~ 245 (422)
....+.....-|.++...| +|..|..+|-.|..-+...+++.
T Consensus 232 ~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~ 274 (293)
T 3u3w_A 232 MALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp CTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 4566778888888888888 68999999999987776666543
No 20
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.39 E-value=0.00016 Score=70.53 Aligned_cols=208 Identities=12% Similarity=-0.010 Sum_probs=140.6
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc--hhHHHHHHHHHHHHh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP--KAKTAKIVRGIIDAV 96 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~--k~~~~k~v~~~l~~~ 96 (422)
..+.++|++.|...++.....++ -...-.++..++.++...|+++.-.+.+..........+ ..........+-..+
T Consensus 114 ~g~~~~A~~~~~~al~~~~~~~~-~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y 192 (378)
T 3q15_A 114 QKEYVEAIGYYREAEKELPFVSD-DIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNY 192 (378)
T ss_dssp TTCHHHHHHHHHHHHTTGGGCCC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHHHHhhCCC-hHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHH
Confidence 44789999999998875321111 235667889999999999999999888887776654332 122333333333333
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
....+ .+.-++.++..++.++..+........-..|+.+|...|++++|.+.+.+.+.-.....++.. ...+.....+
T Consensus 193 ~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~ 270 (378)
T 3q15_A 193 DDFKH-YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWT 270 (378)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHH
T ss_pred HHhCC-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHH
Confidence 32222 334466777777766543333343444568999999999999999999998776555444444 7778888999
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhc---HHHHHHHH
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKD---YKTAYSYF 231 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~d---y~~A~~~f 231 (422)
+...|++.+|...+.++..+..... +|.....+...+++ +...++ +..|..+|
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~l~~l-y~~~~~~~~~~~al~~~ 326 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARS-HKFYKELFLFLQAV-YKETVDERKIHDLLSYF 326 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTC-CSCHHHHHHHHHHH-HSSSCCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHH-HhCCCcHHHHHHHHHHH
Confidence 9999999999999999998877665 55666555544444 344444 55555444
No 21
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.33 E-value=0.00054 Score=64.59 Aligned_cols=249 Identities=9% Similarity=0.013 Sum_probs=151.2
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc-hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 44 RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP-KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~-k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
...-..+.+.+.++...|+|+.-.+.+........... ....+.....+-..+....+ .+.-+..++..++.....++
T Consensus 34 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~ 112 (292)
T 1qqe_A 34 EEAADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN-SVNAVDSLENAIQIFTHRGQ 112 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHcCC
Confidence 34444566667888889999988888776665442221 12223344444444433322 23335666666665443333
Q ss_pred hHHhhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC
Q 014555 123 TFLRQRVEARLAALLMES-REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY 201 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~-g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~ 201 (422)
..--...-..++.+|... |++++|++.+++.+.-.....+.....+++.....++...|++.+|...+.++..+.....
T Consensus 113 ~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 192 (292)
T 1qqe_A 113 FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR 192 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 222222345899999996 9999999999988765443333334456777778899999999999999998877654332
Q ss_pred CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCc
Q 014555 202 VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGP 281 (422)
Q Consensus 202 ~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~ 281 (422)
..+..........|..+...++|..|..+|-.+..-.+...+ ..
T Consensus 193 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------------------------------------~~ 236 (292)
T 1qqe_A 193 LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD------------------------------------SR 236 (292)
T ss_dssp TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC--------------------------------------------
T ss_pred cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC------------------------------------cH
Confidence 111122234456788888899999998877766431111000 00
Q ss_pred chHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHH
Q 014555 282 ELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTL 329 (422)
Q Consensus 282 ~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i 329 (422)
+...+..|..++..++...|...+..|...+..||.....+..+.+.+
T Consensus 237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKIKESI 284 (292)
T ss_dssp -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHHHHHh
Confidence 112345566677677777788888888777778886544444444333
No 22
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.33 E-value=0.00024 Score=67.55 Aligned_cols=189 Identities=8% Similarity=-0.003 Sum_probs=119.2
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc-hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 44 RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP-KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~-k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
...-..+.+.+.++...|+|+.-.+.+........... ..........+-..+....+ .+.-++.++..++.....+.
T Consensus 33 ~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~Al~l~~~~g~ 111 (307)
T 2ifu_A 33 DSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR-MPEAVQYIEKASVMYVENGT 111 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHHHHcCC
Confidence 34455666778889999999998887776665443221 12333444444444433322 22335556666664433222
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCC
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYV 202 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~ 202 (422)
..--...-..++.+|.. |++++|++.+++.+.-.....+......++.....++...|++.+|...++++..+.....
T Consensus 112 ~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~- 189 (307)
T 2ifu_A 112 PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME- 189 (307)
T ss_dssp HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-
Confidence 22112224578888888 9999999988887665444434445566777778888899999999999988877655443
Q ss_pred CchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 203 PPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
.+...+......|..+...++|..|..+|-++.
T Consensus 190 ~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 190 NYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 223334455566777777788888887777665
No 23
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.28 E-value=0.00019 Score=69.98 Aligned_cols=207 Identities=7% Similarity=0.013 Sum_probs=144.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccch-hHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch-hHHh
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK-AKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR-TFLR 126 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k-~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r-~~lr 126 (422)
.....+..++..|+++...+.+.........++. ...+.....+-..+....+ .+.-++.+...++.....+. ..-.
T Consensus 103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~ 181 (378)
T 3q15_A 103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-THVSMYHILQALDIYQNHPLYSIRT 181 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHhCCCchhhH
Confidence 3455678889999999999888877766544332 2233344444433333332 34446667777776543221 1112
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
......++.+|...|++++|.+.+.+.+.-.....+......++.....+|...|++.+|...+.+|..+..... +|..
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-~~~~ 260 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKV-PDLL 260 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHC-GGGH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhC-ChhH
Confidence 333568999999999999999999998877666656666777888888999999999999999999988765544 4555
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHh
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMV 260 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~ 260 (422)
+.....-|.++...|+|..|..+|-.+.......+++..... +..+..+..
T Consensus 261 -~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~ly~ 311 (378)
T 3q15_A 261 -PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKEL--FLFLQAVYK 311 (378)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHH--HHHHHHHHS
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHh
Confidence 666667888899999999999999999887777667655543 344555443
No 24
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.26 E-value=0.00065 Score=66.17 Aligned_cols=206 Identities=7% Similarity=0.031 Sum_probs=143.5
Q ss_pred HHHHHHHcccHHHHHHHHHHhchhhcccchhH-HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch-hHHhhHHH
Q 014555 53 LSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK-TAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR-TFLRQRVE 130 (422)
Q Consensus 53 l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~-~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r-~~lr~~l~ 130 (422)
.+..++..|+++...+.+.........++-.. .+.....+-..+....+ .+.-++.+...++.....+. ..-....-
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 187 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ-TYFSMDYARQAYEIYKEHEAYNIRLLQCH 187 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHTCSTTHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHhCccchHHHHHHH
Confidence 67888899999999888887776654333222 33333333333332222 34446666777766543322 22223346
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++.+|...|++++|.+.+.+.+.-.....+......++.....+|...|++.+|...+.+|..+.......|.. +..
T Consensus 188 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~ 266 (383)
T 3ulq_A 188 SLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSL-PQA 266 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGH-HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhH-HHH
Confidence 6899999999999999999999887766666666677788888999999999999999999998876665421444 555
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcC
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQ 262 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~ 262 (422)
...-|.++...|+|..|..+|-++..-....+++..... +..++.+....
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~--~~~l~~~~~~~ 316 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE--FEFLKSLYLSG 316 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH--HHHHHHHHTSS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHhCC
Confidence 666788888999999999999999887776677655544 34455554433
No 25
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.22 E-value=0.00027 Score=66.55 Aligned_cols=197 Identities=14% Similarity=0.076 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH-HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK-TAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~-~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
..+...+..++..|+++...+.+..........+... .......+...+... +..+.-++.++..++.+......|..
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKK-VDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 4556678888999999999888876554332211111 111112222222211 11222344444444432222223323
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc-chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD-KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~-~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
...-..++.+|...|+|++|...+++.+.-.....+ ....+.++.....+|...|++.+|..++.+|..+..... ++.
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~-~~~ 233 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRIN-SMA 233 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-BCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcC-cHH
Confidence 334568999999999999999999998755444322 333447788889999999999999999999987765444 445
Q ss_pred hhHHHHHHHHHHhchhhcHHHH-HHHHHHHhhhhhccCChhH
Q 014555 206 QQGTIDLQSGILHAEEKDYKTA-YSYFFEAFEAFNALEDPRA 246 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A-~~~f~ea~~~~~~~~~~~~ 246 (422)
..+.....-|.++...|+|..| ..+|-.|..-+...+++..
T Consensus 234 ~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~ 275 (293)
T 2qfc_A 234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAY 275 (293)
T ss_dssp SHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhh
Confidence 6677888899999999999999 6667777776666666544
No 26
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.20 E-value=8.6e-05 Score=61.45 Aligned_cols=111 Identities=13% Similarity=0.028 Sum_probs=91.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-..++.++...|++++|.+.+...+.-.....+......++.....++...|++.+|...+.++........ ++...+.
T Consensus 52 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~ 130 (164)
T 3ro3_A 52 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK-DRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcc-chHhHHH
Confidence 347899999999999999999998877666656666677788889999999999999999999987766555 5556667
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL 241 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~ 241 (422)
....-|.++...++|..|..+|-++..-+...
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 77778889999999999999999887765543
No 27
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.15 E-value=0.00069 Score=58.91 Aligned_cols=142 Identities=15% Similarity=0.089 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHhhCCH
Q 014555 105 LQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD-DKLLLVDIDLLESKLHFSLRNL 183 (422)
Q Consensus 105 ~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-~~~~~~e~~l~~~~~~~~~~n~ 183 (422)
.-++.+...++.+...+........-..++.++...|++++|.+.+.+.+.-..... +......++.....++...|++
T Consensus 44 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 123 (203)
T 3gw4_A 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123 (203)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCH
Confidence 335666666666554333333333456899999999999999999999877666554 3335667777788999999999
Q ss_pred HHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHH
Q 014555 184 PKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAV 247 (422)
Q Consensus 184 ~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~ 247 (422)
.+|...+.++..+..... ++...+.....-|.++...|+|.+|..+|-++..-+...+++...
T Consensus 124 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 186 (203)
T 3gw4_A 124 AGARQEYEKSLVYAQQAD-DQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAV 186 (203)
T ss_dssp HHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999999987766555 566667777788999999999999999999999888887776443
No 28
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.14 E-value=0.00091 Score=61.92 Aligned_cols=222 Identities=14% Similarity=0.065 Sum_probs=141.3
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCch-HHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhccc---chhHHHH
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSS-EALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI---PKAKTAK 87 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~---~k~~~~k 87 (422)
.+..+. ..+.++|++.|...++...... .+......++..++.++...|+++...+.+.......... .......
T Consensus 33 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 33 LVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 344433 3468999999998886321000 0023456788899999999999999888887776654211 0122333
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc--chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--ccc
Q 014555 88 IVRGIIDAVAKIPGTSELQIALCKEMVQWTRAE--KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL--DDK 163 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~--~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~--~~~ 163 (422)
....+-..+....+ .+.-++.+...++..... +........-..++.++...|++++|.+.+...+...... .+.
T Consensus 113 ~~~~l~~~~~~~g~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 113 TLNNLAVLYGKRGK-YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHTTTC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHcCc-HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 33444444433322 333466666666654211 1111112224589999999999999999999987765443 234
Q ss_pred hhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC-------------------------------------------
Q 014555 164 LLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI------------------------------------------- 200 (422)
Q Consensus 164 ~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i------------------------------------------- 200 (422)
.....++...++++...|++.+|...+.++.......
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 4566777778899999999999999999887542110
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..+ .-.+.....-|.++...|+|.+|..+|-++..
T Consensus 272 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 272 VDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp --C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 011 22334455667788888999999988887765
No 29
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.10 E-value=0.0022 Score=58.19 Aligned_cols=205 Identities=13% Similarity=0.034 Sum_probs=130.6
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhccc---chhHHHHHHHHHHHHhhcC
Q 014555 23 SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI---PKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 23 ~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~---~k~~~~k~v~~~l~~~~~~ 99 (422)
.+|++.+..+..... .....++..++.++...|+++...+.+.......... ...........+-..+...
T Consensus 25 ~~al~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 98 (283)
T 3edt_B 25 KQALEDLEKTSGHDH------PDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKR 98 (283)
T ss_dssp HHHHHHHHHHHCSSS------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCCCC------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHh
Confidence 455555555443221 2456688899999999999999988888777654211 1123333444444444322
Q ss_pred CCChhHHHHHHHHHHHHHHhc----chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHH
Q 014555 100 PGTSELQIALCKEMVQWTRAE----KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL--DDKLLLVDIDLLE 173 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~----~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~--~~~~~~~e~~l~~ 173 (422)
.+ .+.-++.+...+...... ....... -..++.++...|++++|.+.+.+.+.-.... .+......++...
T Consensus 99 g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~--~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 175 (283)
T 3edt_B 99 GK-YKEAEPLCKRALEIREKVLGKFHPDVAKQ--LNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNL 175 (283)
T ss_dssp TC-HHHHHHHHHHHHHHHHHHHCTTCHHHHHH--HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHHHHHHcCCCChHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 22 344466677776654321 1222222 5589999999999999999999987665443 2234566777778
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccC------------------------------------------CCCchhhHHHH
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAI------------------------------------------YVPPAQQGTID 211 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i------------------------------------------~~~~~i~a~i~ 211 (422)
.+++...|++.+|...+.++....... ...+.-.+...
T Consensus 176 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (283)
T 3edt_B 176 ASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTL 255 (283)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 899999999999999999887652210 00112223344
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-|.++...|+|..|..+|-.+.+
T Consensus 256 ~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 256 RSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5567777788888888888777764
No 30
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.07 E-value=0.0028 Score=58.55 Aligned_cols=194 Identities=10% Similarity=-0.018 Sum_probs=130.7
Q ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc---hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc
Q 014555 44 RVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP---KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAE 120 (422)
Q Consensus 44 ~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~---k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~ 120 (422)
.....++..++..+...|+++.....+........... ..........+-..+....+ .+.-++.+...++.....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~ 102 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKDAANLLNDALAIREKT 102 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHHH
Confidence 35567889999999999999999888887776432211 22223333333333332222 333466667776654321
Q ss_pred --chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 121 --KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL--DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 121 --~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~--~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
+........-..++.++...|++++|.+.+...+...... .+......++.....++...|++.+|...+.++...
T Consensus 103 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 182 (311)
T 3nf1_A 103 LGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEI 182 (311)
T ss_dssp HCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1011112225589999999999999999999887665443 334456677777889999999999999999998876
Q ss_pred hccCC-CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 197 ANAIY-VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 197 ~~~i~-~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
..... .++.........-|.++...++|..|..+|-++....
T Consensus 183 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 183 YQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp HHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 54431 1223445556667888899999999999999887644
No 31
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.02 E-value=0.0016 Score=56.44 Aligned_cols=184 Identities=11% Similarity=-0.017 Sum_probs=121.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccch-hHHHHHHHHHHHHhh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK-AKTAKIVRGIIDAVA 97 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k-~~~~k~v~~~l~~~~ 97 (422)
..+.++|.+.+..+..... ....++..++.++...|+++.-.+.+............ .........+-..+.
T Consensus 5 ~g~~~~A~~~~~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 5 AHDYALAERQAQALLAHPA-------TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp --CHHHHHHHHHHHHTSTT-------THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhcCChH-------HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4467788884444433221 23567888999999999999998888877765533322 222222233322222
Q ss_pred cCCCChhHHHHHHHHHHHHHHhcc-hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 98 KIPGTSELQIALCKEMVQWTRAEK-RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 98 ~~~~~~~~~~~l~~~~i~~~~~~~-r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
.. +..+.-++.+...++.++..+ ..+........++.++...|++++|...+.+.+.-.....+.......+.....+
T Consensus 78 ~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 156 (203)
T 3gw4_A 78 MA-GNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDL 156 (203)
T ss_dssp HT-TCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred Hc-CCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHH
Confidence 22 223344667777777665444 3333344466899999999999999999999877665555555666667778889
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
+...|++.+|...+.++..+..... ++...+...
T Consensus 157 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~ 190 (203)
T 3gw4_A 157 AQQEKNLLEAQQHWLRARDIFAELE-DSEAVNELM 190 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHCcCHHHHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 9999999999999999988876665 444444333
No 32
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.96 E-value=0.0025 Score=61.46 Aligned_cols=215 Identities=11% Similarity=0.009 Sum_probs=136.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
..++++|++.+...+...+.++ ......++..++..+...|+++.-.+.+..........+.....-.....+..+..
T Consensus 27 ~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 27 DGNPDEAERLAKLALEELPPGW--FYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp TTCHHHHHHHHHHHHHTCCTTC--HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCCc--hhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 4578999999998776543222 12445678889999999999999888887766544322222111111111221111
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchh--HHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRT--FLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~--~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
..+..+.-.+.+...++.....+.. .........++.++...|++++|...+.+.+.......+.. .+..+....++
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~ 183 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQC 183 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHH
Confidence 1222333466777777765432111 11222245799999999999999999998876554433332 45667777899
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+...|++.+|...+..+..+......++...+......+.++...|++..|...+-++..
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 243 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAK 243 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCC
Confidence 999999999999999998775443312223333333445557788999999988887764
No 33
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=97.92 E-value=0.00057 Score=56.30 Aligned_cols=115 Identities=13% Similarity=0.041 Sum_probs=95.6
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
+-..++.++...|++++|.+.+.+.+.-.....+......++.....++...|++.+|...+.++........ ++...+
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-~~~~~~ 89 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-DRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-CcHHHH
Confidence 3558999999999999999999998877666656666777888889999999999999999999988776655 556667
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP 244 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~ 244 (422)
.....-|.++...++|.+|..+|-++.......+++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 125 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 125 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccch
Confidence 777788999999999999999999998776655554
No 34
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.90 E-value=0.016 Score=54.27 Aligned_cols=101 Identities=12% Similarity=0.026 Sum_probs=71.8
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...++.++...|++++|.+.+...+.. .+. ..+.+.....++...|++.+|...+.++...... ++.....
T Consensus 157 ~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~~~~~~~ 227 (359)
T 3ieg_A 157 RELRAECFIKEGEPRKAISDLKAASKL----KSD--NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAH 227 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT----CSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---CHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc---chHHHHH
Confidence 347889999999999999888877632 221 2355666788899999999999999888765322 2222211
Q ss_pred H--------HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 210 I--------DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 210 i--------~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
+ ....|..+...++|.+|...|-.+.....
T Consensus 228 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~ 265 (359)
T 3ieg_A 228 YKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 1 12347778899999999999988876543
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.00088 Score=62.59 Aligned_cols=48 Identities=6% Similarity=0.066 Sum_probs=27.7
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHhch
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQEN-RAQDLCNLLTQLRP 75 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~l~~~~~~l~~ 75 (422)
+.++|++.|...++..+... .++..++.++...| +++...+.+.....
T Consensus 71 ~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~~A~~~~~~a~~ 119 (330)
T 3hym_B 71 KANELFYLSHKLVDLYPSNP-------VSWFAVGCYYLMVGHKNEHARRYLSKATT 119 (330)
T ss_dssp CHHHHHHHHHHHHHHCTTST-------HHHHHHHHHHHHSCSCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCcCCH-------HHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56677777766665443221 24455666666666 66666655555544
No 36
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=97.88 E-value=0.0039 Score=58.10 Aligned_cols=200 Identities=14% Similarity=0.067 Sum_probs=128.8
Q ss_pred chHHHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
.+..|..+.. .+.++|++.|..+++..+... .++..++..+...|+++...+.+.......+.-+....
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~--- 94 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHA-------SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWF--- 94 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHH---
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCh-------hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHH---
Confidence 4555665543 468999999999987654332 24455667888999999999888887765443222211
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
.+-..+.......+.-++.++..++...+.... -..++.++...|++++|.+.+...+..... . ..
T Consensus 95 --~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----~--~~ 160 (330)
T 3hym_B 95 --AVGCYYLMVGHKNEHARRYLSKATTLEKTYGPA------WIAYGHSFAVESEHDQAMAAYFTAAQLMKG----C--HL 160 (330)
T ss_dssp --HHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHH------HHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----C--SH
T ss_pred --HHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHH------HHHHHHHHHHccCHHHHHHHHHHHHHhccc----c--HH
Confidence 122222222212233344555554432222222 338899999999999999999887654221 1 22
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
.+.....++...|++.+|...+.++.... | .- ......-|.++...++|.+|...|-.+......
T Consensus 161 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~-----~-~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~ 225 (330)
T 3hym_B 161 PMLYIGLEYGLTNNSKLAERFFSQALSIA-----P-ED-PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKA 225 (330)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----T-TC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-----C-CC-hHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhh
Confidence 33345778999999999999998886542 1 11 233455778888999999999999988876543
No 37
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=97.83 E-value=0.0035 Score=58.75 Aligned_cols=191 Identities=12% Similarity=0.009 Sum_probs=127.6
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccch-hHHHHHHHHHHHHh
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK-AKTAKIVRGIIDAV 96 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k-~~~~k~v~~~l~~~ 96 (422)
...+.++|++.+..+++......+ .......+..++..+...|+++...+.+............ .....+...+-..+
T Consensus 87 ~~~~y~~a~~~~~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 3u3w_A 87 KQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHTTCCCCHH-HHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhccccCChH-HHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence 445789999999999886543332 2222334556888888889999988888777664322111 12223334444444
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhc-chhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAE-KRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESK 175 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~-~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~ 175 (422)
....+ .+.-++.++..++..+.. +.......+-..++.+|...|+|++|.+.++..+.-.....+......++.....
T Consensus 166 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 3u3w_A 166 AENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 32322 344466777777655432 1122223335699999999999999999999988776666666677888888899
Q ss_pred HHHhhC-CHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 176 LHFSLR-NLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 176 ~~~~~~-n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
++...| ++.+|...+.+|..+..... ++.....+.
T Consensus 245 ~~~~~g~~~~~A~~~~~~Al~i~~~~~-~~~~~~~l~ 280 (293)
T 3u3w_A 245 CLRKLEYEEAEIEDAYKKASFFFDILE-MHAYKEALV 280 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTT-CTGGGGGGT
T ss_pred HHHHhCCcHHHHHHHHHHHHHHHHHhC-CHHHHHHHH
Confidence 999999 57999999999988877655 445554444
No 38
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.80 E-value=0.0044 Score=55.49 Aligned_cols=196 Identities=11% Similarity=0.002 Sum_probs=112.3
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH--HHHHHHHHHHHh
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK--TAKIVRGIIDAV 96 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~--~~k~v~~~l~~~ 96 (422)
..+.++|++.|...++.. .+ ..++..++..+...|+++...+.+.......+...... .......+-..+
T Consensus 18 ~~~~~~A~~~~~~a~~~~-~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (258)
T 3uq3_A 18 ARQFDEAIEHYNKAWELH-KD-------ITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAY 89 (258)
T ss_dssp TTCHHHHHHHHHHHHHHS-CC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhh-cc-------HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHH
Confidence 346889999888888755 32 23667788888888988888877776665443221000 011222222222
Q ss_pred hcCCCChhHHHHHHHHHHHH-------------------HH---hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQW-------------------TR---AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLV 154 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~-------------------~~---~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~ 154 (422)
....+ .+.-++.++..++. .+ ..... ....-..++.++...|++++|.+.+...+
T Consensus 90 ~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 166 (258)
T 3uq3_A 90 HKLGD-LKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE--KAEEARLEGKEYFTKSDWPNAVKAYTEMI 166 (258)
T ss_dssp HHTTC-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHccc-HHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 21111 11112222222221 10 00011 11123478888888888888888888776
Q ss_pred HHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 155 KEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 155 ~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
... +. ...++.....++...|++.+|...+.++..... .. ......-|..+...|+|..|..+|-.+
T Consensus 167 ~~~----~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~-~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 167 KRA----PE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------NF-VRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcC----cc--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH------HH-HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 431 11 234555567788888888888888887765421 11 223445677777888888888888777
Q ss_pred hhhh
Q 014555 235 FEAF 238 (422)
Q Consensus 235 ~~~~ 238 (422)
....
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 6544
No 39
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.79 E-value=0.0057 Score=59.93 Aligned_cols=205 Identities=7% Similarity=0.031 Sum_probs=136.7
Q ss_pred HHHHHHHHcccHHHHHHHHHHhchhhcccc------------hhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHh
Q 014555 52 ELSDLLRQENRAQDLCNLLTQLRPFFSLIP------------KAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRA 119 (422)
Q Consensus 52 ~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~------------k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~ 119 (422)
+-++-+++.|++++..+.+..+.+.....+ ....++.+..+...+....+ .+.-.+.+...+.....
T Consensus 9 ~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~-~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 9 EEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA-KDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC-HHHHHHHHHHTHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHHH
Confidence 345667788898888888877665432211 12223456666665554333 23335556666665443
Q ss_pred cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 120 EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 120 ~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
-++...-..+...++.++...|++++|.+++...........+......++...++++...|++.+|...+..+......
T Consensus 88 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 88 FAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp SCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred ccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 33332222223456677777899999999999887776665555556667777789999999999999999988776655
Q ss_pred CCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHH
Q 014555 200 IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKI 258 (422)
Q Consensus 200 i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~l 258 (422)
.. +......+...-|.+|...+||..|...|-.+........++.......|..+..+
T Consensus 168 ~~-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~ 225 (434)
T 4b4t_Q 168 LD-DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGIL 225 (434)
T ss_dssp SS-CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred cc-cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Confidence 54 45566778888999999999999999999888776666666555444444444333
No 40
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=97.79 E-value=0.025 Score=54.30 Aligned_cols=198 Identities=9% Similarity=-0.065 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 43 LRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
..+.-.+....+.++...|+++...+.+.......+.-...........+-..+. ..+..+.-.+.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~al~~~~~~~~ 88 (373)
T 1hz4_A 10 DTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH-CKGELTRSLALMQQTEQMARQHDV 88 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHHHHHhcCc
Confidence 3455567777888999999999988887776553321111111111111111111 112223345667777776655554
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccc--hhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK--LLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~--~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
.+........++.++...|++++|...+.+.+.......+. ......+.....++...|++..|...+.++.......
T Consensus 89 ~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 168 (373)
T 1hz4_A 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSY 168 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcc
Confidence 45444445689999999999999999999887655443222 2344455556788999999999999999998776554
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCC
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALED 243 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~ 243 (422)
. ++. .......-|.++...|+|..|..+|-++.......+.
T Consensus 169 ~-~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~ 209 (373)
T 1hz4_A 169 Q-PQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKY 209 (373)
T ss_dssp C-GGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCC
T ss_pred C-cHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCc
Confidence 3 333 3445556788889999999999999888765444333
No 41
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=97.73 E-value=0.011 Score=55.45 Aligned_cols=203 Identities=15% Similarity=0.044 Sum_probs=132.0
Q ss_pred HHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 14 AQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 14 ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
|..+. ..+.++|++.|...++..+... .+...++.++...|+++...+.+.......+.-+.. ...+
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~l 194 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCVWDA-------ELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEA-----FYKI 194 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHH-----HHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCCCch-------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH-----HHHH
Confidence 34433 3468999999999887655332 367789999999999999998888877654322211 1112
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH------hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhH
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL------RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLL 166 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l------r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~ 166 (422)
-..+....+ .+.-++.+...++...+....|. +......++..+...|++++|.+.+...+... .++....
T Consensus 195 a~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~ 271 (359)
T 3ieg_A 195 STLYYQLGD-HELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYT 271 (359)
T ss_dssp HHHHHHHTC-HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHH
Confidence 221111111 22224445555443222222111 11113467999999999999999999887542 2334455
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 167 VDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 167 ~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...+.....++...|++.+|...+.++.... |.. ......-|.++...|+|..|...|-.+.+..
T Consensus 272 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 272 VRSKERICHCFSKDEKPVEAIRICSEVLQME-----PDN--VNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----ccc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 5667777889999999999999999887652 111 2344567888889999999999999987644
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=97.70 E-value=0.0065 Score=54.33 Aligned_cols=196 Identities=11% Similarity=-0.041 Sum_probs=111.5
Q ss_pred chHHHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....+..+.. .++++|+..|...++..+... .+...++.++...|++++-.+.+......-+.-+.+...
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~-- 78 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENPQDP-------EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMV-- 78 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH--
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHH--
Confidence 3445555544 468999999999999876443 367789999999999999988888777654432222111
Q ss_pred HHHHHHHh-hcCCC------ChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc
Q 014555 89 VRGIIDAV-AKIPG------TSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD 161 (422)
Q Consensus 89 v~~~l~~~-~~~~~------~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~ 161 (422)
+-.+.... ...+. ..+.-+..++..++...+.-.. -..++.++...|++++|.+.+.+.+.- +
T Consensus 79 lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~------~~~lg~~~~~~g~~~~A~~~~~~al~~----~ 148 (217)
T 2pl2_A 79 LSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPL------HLQRGLVYALLGERDKAEASLKQALAL----E 148 (217)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH----C
T ss_pred HHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHH------HHHHHHHHHHcCChHHHHHHHHHHHhc----c
Confidence 11111111 00000 0011133333333321111112 337899999999999999999887643 1
Q ss_pred cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 162 DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 162 ~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
...+++.....++...|++..|...++++.... +.++ .....-|.++...|+|.+|...|-.+
T Consensus 149 ---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---P~~~----~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 149 ---DTPEIRSALAELYLSMGRLDEALAQYAKALEQA---PKDL----DLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp ---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---TTCH----HHHHHHHHHHTC--------------
T ss_pred ---cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---CCCh----HHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 134455666788999999999999999887653 1111 22344577788889999998777654
No 43
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.69 E-value=0.0022 Score=60.34 Aligned_cols=176 Identities=12% Similarity=0.061 Sum_probs=109.4
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh-HHHHHHHHHHHHhhcC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA-KTAKIVRGIIDAVAKI 99 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~-~~~k~v~~~l~~~~~~ 99 (422)
+.++|++.|...+......+ +....-.++..++.++.+.|+++.-.+.+..-.......... ..+.....+-..+...
T Consensus 52 ~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~ 130 (292)
T 1qqe_A 52 ELNLAGDSFLKAADYQKKAG-NEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILEND 130 (292)
T ss_dssp CTHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 56778877776654311000 012345688899999999999999888887766655332221 2233444444444432
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccc-hhHHHHHHHHHHHHH
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDK-LLLVDIDLLESKLHF 178 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~-~~~~e~~l~~~~~~~ 178 (422)
-+..+.-++.++..++.....+........-..++.++...|+|++|++.++..+.-....... ....+.++....++.
T Consensus 131 lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~ 210 (292)
T 1qqe_A 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (292)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHH
Confidence 1223444677788877665433221112234589999999999999999998876532221111 122345555677888
Q ss_pred hhCCHHHHHHHHHHHHHhh
Q 014555 179 SLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~ 197 (422)
..|++..|...++++..+.
T Consensus 211 ~~g~~~~A~~~~~~al~l~ 229 (292)
T 1qqe_A 211 AATDAVAAARTLQEGQSED 229 (292)
T ss_dssp HTTCHHHHHHHHHGGGCC-
T ss_pred HcCCHHHHHHHHHHHHhhC
Confidence 9999999999998876543
No 44
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=97.66 E-value=0.011 Score=53.88 Aligned_cols=187 Identities=10% Similarity=-0.009 Sum_probs=116.6
Q ss_pred chHHHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....|..+.. .+.++|++.|..+++..+.+. +...++..++.+++..|+++.-.+.+..+....+
T Consensus 18 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p---------- 83 (261)
T 3qky_A 18 AFERAMEFYNQGKYDRAIEYFKAVFTYGRTHE----WAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ---------- 83 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHGGGCSCST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT----------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCc----chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC----------
Confidence 4445665544 468999999999998765332 4467888999999999999888877766554332
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHh--------cccHHHHHHHHHHHHHHHhhh
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLME--------SREYTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~--------~g~~~~A~~~l~~l~~e~~~~ 160 (422)
++.... .. -..++..+.. .|++++|...+..++..-...
T Consensus 84 ------------~~~~~~---------------~a------~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~ 130 (261)
T 3qky_A 84 ------------IDPRVP---------------QA------EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNH 130 (261)
T ss_dssp ------------TCTTHH---------------HH------HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTC
T ss_pred ------------CCchhH---------------HH------HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCc
Confidence 111000 00 1145555555 888999988888876542221
Q ss_pred ccc-----------hhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch---------
Q 014555 161 DDK-----------LLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE--------- 220 (422)
Q Consensus 161 ~~~-----------~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~--------- 220 (422)
... ....+..+...+++...|++.+|...++++...... + .........-|..+..
T Consensus 131 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~---~-~~~~~a~~~l~~~~~~~g~~~~~~~ 206 (261)
T 3qky_A 131 ELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPD---T-PWADDALVGAMRAYIAYAEQSVRAR 206 (261)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---S-TTHHHHHHHHHHHHHHHHHTSCGGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC---C-chHHHHHHHHHHHHHHhcccchhhc
Confidence 110 011122256678999999999999999887654211 1 1122222334444443
Q ss_pred -hhcHHHHHHHHHHHhhhhhccCChhHHHH
Q 014555 221 -EKDYKTAYSYFFEAFEAFNALEDPRAVFS 249 (422)
Q Consensus 221 -~~dy~~A~~~f~ea~~~~~~~~~~~~~~~ 249 (422)
.++|..|...|-.+...++. ++....+
T Consensus 207 ~~~~~~~A~~~~~~~~~~~p~--~~~~~~a 234 (261)
T 3qky_A 207 QPERYRRAVELYERLLQIFPD--SPLLRTA 234 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT--CTHHHHH
T ss_pred ccchHHHHHHHHHHHHHHCCC--ChHHHHH
Confidence 39999999999998887753 3444444
No 45
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=97.64 E-value=0.0084 Score=56.08 Aligned_cols=182 Identities=12% Similarity=0.005 Sum_probs=119.5
Q ss_pred hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhccc-chhHHHHHHHHHHHHh
Q 014555 18 EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLI-PKAKTAKIVRGIIDAV 96 (422)
Q Consensus 18 ~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~-~k~~~~k~v~~~l~~~ 96 (422)
...+.++|++.+...++......+ ..........++.++...|+++...+.+.......... ...........+-..+
T Consensus 87 ~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y 165 (293)
T 2qfc_A 87 KQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIY 165 (293)
T ss_dssp HTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 344689999999887765433322 22334445678888999999999888877655433211 1112233334444433
Q ss_pred hcCCCChhHHHHHHHHHHHHHHhcc-hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHH
Q 014555 97 AKIPGTSELQIALCKEMVQWTRAEK-RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESK 175 (422)
Q Consensus 97 ~~~~~~~~~~~~l~~~~i~~~~~~~-r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~ 175 (422)
....+ .+.-+..++..++.+...+ ...+...+-..++.+|...|+|++|++.+++.+.-.....+......++.....
T Consensus 166 ~~~~~-~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~ 244 (293)
T 2qfc_A 166 AENGY-LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGE 244 (293)
T ss_dssp HHTTC-HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHH
T ss_pred HHcCC-HHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 32222 3444667777776544221 111111235589999999999999999999987665544555667788888899
Q ss_pred HHHhhCCHHHH-HHHHHHHHHhhccCC
Q 014555 176 LHFSLRNLPKA-KAALTAARTAANAIY 201 (422)
Q Consensus 176 ~~~~~~n~~ka-k~~l~~a~~~~~~i~ 201 (422)
+|...|++.+| ..++.+|..+.....
T Consensus 245 ~y~~~g~~~~Ai~~~~~~Al~~~~~~~ 271 (293)
T 2qfc_A 245 CLRKLEYEEAEIEDAYKKASFFFDILE 271 (293)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHHhC
Confidence 99999999999 888999988776654
No 46
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.63 E-value=0.0047 Score=63.24 Aligned_cols=49 Identities=4% Similarity=0.029 Sum_probs=30.4
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
.+.++|++.|..+++....+ ..+...++..|.+.|++++-.+.+.....
T Consensus 353 g~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 401 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDRHPEK-------AVTWLAVGIYYLCVNKISEARRYFSKSST 401 (597)
T ss_dssp TCHHHHHHHHHHHHHHCTTS-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhCccc-------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35677777777776543322 12444567777777777777766666554
No 47
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.62 E-value=0.024 Score=55.50 Aligned_cols=207 Identities=9% Similarity=-0.029 Sum_probs=131.9
Q ss_pred HHHhhc-CChHHHHHHHHhhcCCCCCch---HHHHH-----HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH
Q 014555 14 AQAKEA-SNPSDAISMLYRVLDDPSSSS---EALRV-----KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK 84 (422)
Q Consensus 14 ak~~~~-~~~~~Ai~~l~~i~~~~~~~~---~~~~~-----~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~ 84 (422)
+..+.. .+.++|++.|...++..+... +.... .......++..+...|+++...+.+.......+.-+
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~--- 177 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDA--- 177 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh---
Confidence 344333 368999999999988765432 11110 112244557889999999999988888776443211
Q ss_pred HHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 85 TAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 85 ~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
.....+...+....+ .+.-++.++..++.....-.. -..++.+|...|++++|.+.+...+.... +...
T Consensus 178 --~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~g~~~~A~~~~~~~~~~~p--~~~~ 246 (450)
T 2y4t_A 178 --ELRELRAECFIKEGE-PRKAISDLKAASKLKNDNTEA------FYKISTLYYQLGDHELSLSEVRECLKLDQ--DHKR 246 (450)
T ss_dssp --HHHHHHHHHHHHTTC-GGGGHHHHHHHHHHHCSCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHH
T ss_pred --HHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ChHH
Confidence 122233333332322 233356666666543222122 33789999999999999999988864311 1111
Q ss_pred h--------HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 165 L--------LVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 165 ~--------~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
. .++..+.....+...|++.+|...+.++.... +.+|........+-|.++...++|..|...|-.+..
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE---PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 1 12223445788999999999999999887653 224455566777888899999999999988888765
Q ss_pred h
Q 014555 237 A 237 (422)
Q Consensus 237 ~ 237 (422)
.
T Consensus 324 ~ 324 (450)
T 2y4t_A 324 M 324 (450)
T ss_dssp H
T ss_pred h
Confidence 3
No 48
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.61 E-value=0.07 Score=53.37 Aligned_cols=194 Identities=11% Similarity=0.013 Sum_probs=132.2
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+.++|++.|..+++..+.+.+.....-.++..++.++...|+++...+.+.......+. ......+-..+...
T Consensus 217 ~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~~~- 289 (537)
T 3fp2_A 217 LLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT------PNSYIFLALTLADK- 289 (537)
T ss_dssp HHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC------HHHHHHHHHHTCCS-
T ss_pred HHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHh-
Confidence 57899999999998876554434445667899999999999999999888888764432 12222233333222
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
+..+.-++.+...++........ -..++.++...|++++|.+.+...+..- +. ..+.+.....++...
T Consensus 290 ~~~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~--~~~~~~~la~~~~~~ 357 (537)
T 3fp2_A 290 ENSQEFFKFFQKAVDLNPEYPPT------YYHRGQMYFILQDYKNAKEDFQKAQSLN----PE--NVYPYIQLACLLYKQ 357 (537)
T ss_dssp SCCHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT--CSHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHhccCCCCHHH------HHHHHHHHHhcCCHHHHHHHHHHHHHhC----CC--CHHHHHHHHHHHHHc
Confidence 22344466666666643222222 3488999999999999999998886531 11 124455567899999
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 181 ~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
|++.+|...+.++...... ++ .....-|.++...++|..|...|-.+......
T Consensus 358 g~~~~A~~~~~~~~~~~~~---~~----~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 410 (537)
T 3fp2_A 358 GKFTESEAFFNETKLKFPT---LP----EVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410 (537)
T ss_dssp TCHHHHHHHHHHHHHHCTT---CT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---Ch----HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCc
Confidence 9999999999988766321 22 22344588888999999999999988765543
No 49
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=97.61 E-value=0.062 Score=52.52 Aligned_cols=99 Identities=12% Similarity=0.035 Sum_probs=68.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++.+|...|++++|.+.+...+..-. . ..+.+...+.++...|++.+|...+.++...... ++.....+
T Consensus 181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~---~~~~~~~~ 251 (450)
T 2y4t_A 181 ELRAECFIKEGEPRKAISDLKAASKLKN----D--NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD---HKRCFAHY 251 (450)
T ss_dssp HHHHHHHHHTTCGGGGHHHHHHHHHHHC----S--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----C--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---hHHHHHHH
Confidence 4678888888888888888877764311 1 2355566678899999999999999988755221 22222111
Q ss_pred H--------HHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 D--------LQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~--------~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
. ...|..+...++|..|...|-.+....
T Consensus 252 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~ 287 (450)
T 2y4t_A 252 KQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE 287 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 1 123778889999999999998887643
No 50
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.60 E-value=0.011 Score=56.31 Aligned_cols=207 Identities=14% Similarity=0.020 Sum_probs=122.2
Q ss_pred chHHHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH----
Q 014555 10 TDSIAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK---- 84 (422)
Q Consensus 10 ~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~---- 84 (422)
....+..+... +.++|++.|...++..+... .++..++.++...|+++...+.+.......+.-+...
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~ 139 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM-------EAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 44566665544 68999999999988765332 3666888889999999888877776665443221111
Q ss_pred --------HHHHHHHHHHHhhcCCCChhH-------------------------------HHHHHHHHHHHHHhcchhHH
Q 014555 85 --------TAKIVRGIIDAVAKIPGTSEL-------------------------------QIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 85 --------~~k~v~~~l~~~~~~~~~~~~-------------------------------~~~l~~~~i~~~~~~~r~~l 125 (422)
..+.+..+-..+...|+.... -++.++..++......
T Consensus 140 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~---- 215 (368)
T 1fch_A 140 VSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSI---- 215 (368)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSC----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcc----
Confidence 111222222222222322110 0122222222111100
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
....-..++.++...|++++|...++..+.. ++. ..+.+.....++...|++.+|...+.++.... |..
T Consensus 216 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----~~~ 284 (368)
T 1fch_A 216 DPDVQCGLGVLFNLSGEYDKAVDCFTAALSV----RPN--DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-----PGY 284 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCc
Confidence 1122347888888999999998888877643 111 13455556778888899999988888876652 111
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
......-|.++...|+|..|..+|-.+......
T Consensus 285 --~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 317 (368)
T 1fch_A 285 --IRSRYNLGISCINLGAHREAVEHFLEALNMQRK 317 (368)
T ss_dssp --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 233455677778888999998888888665443
No 51
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=97.60 E-value=0.0092 Score=59.96 Aligned_cols=47 Identities=15% Similarity=0.136 Sum_probs=26.0
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
++++|++.|...++..+. ..++..++.++...|+++...+.+.....
T Consensus 258 ~~~~A~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 304 (537)
T 3fp2_A 258 NLLDAQVLLQESINLHPT--------PNSYIFLALTLADKENSQEFFKFFQKAVD 304 (537)
T ss_dssp CHHHHHHHHHHHHHHCCC--------HHHHHHHHHHTCCSSCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCC--------chHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 466666666666654332 12344555566666666665555555444
No 52
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.59 E-value=0.0026 Score=54.68 Aligned_cols=158 Identities=11% Similarity=0.011 Sum_probs=104.0
Q ss_pred HHHh-hcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 14 AQAK-EASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 14 ak~~-~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
+... ...+.++|++.|...++..+... .++..++.++.+.|+++...+.+.......+..+.... ..-
T Consensus 12 G~~~~~~g~~~~A~~~~~~al~~~p~~~-------~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~~-- 80 (184)
T 3vtx_A 12 GDKKRTKGDFDGAIRAYKKVLKADPNNV-------ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY--ILG-- 80 (184)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH--HHH--
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH--HHH--
Confidence 4443 34578999999999998765432 37788999999999999999888887765543322211 111
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLL 172 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~ 172 (422)
.......+ .+.-.+.+...+........ . ...++.+|...|++++|++.+++.+.- ++. ..+++..
T Consensus 81 -~~~~~~~~-~~~a~~~~~~a~~~~~~~~~----~--~~~lg~~~~~~g~~~~A~~~~~~~l~~----~p~--~~~~~~~ 146 (184)
T 3vtx_A 81 -SANFMIDE-KQAAIDALQRAIALNTVYAD----A--YYKLGLVYDSMGEHDKAIEAYEKTISI----KPG--FIRAYQS 146 (184)
T ss_dssp -HHHHHTTC-HHHHHHHHHHHHHHCTTCHH----H--HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHH
T ss_pred -HHHHHcCC-HHHHHHHHHHHHHhCccchH----H--HHHHHHHHHHhCCchhHHHHHHHHHHh----cch--hhhHHHH
Confidence 11111111 23334444444443211111 1 348899999999999999999887643 222 2455666
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
...++...|++.+|...+++|..+
T Consensus 147 lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 147 IGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhC
Confidence 688999999999999999988665
No 53
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=97.56 E-value=0.0059 Score=54.80 Aligned_cols=173 Identities=11% Similarity=0.047 Sum_probs=108.0
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchh-----
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKA----- 83 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~----- 83 (422)
....|..+. ..+.++|++.|..+++..+.+. +...+...++..+++.|+|+...+.+..+....+.-+..
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~----~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGP----YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST----THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 444555544 4578999999999998654322 456688999999999999999999888887766543221
Q ss_pred ----------------------------HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHH
Q 014555 84 ----------------------------KTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAA 135 (422)
Q Consensus 84 ----------------------------~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~ 135 (422)
...+.+..+-..+..-|++.... .....+.. +. ... ......++.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~-~a~~~l~~-~~---~~~--~~~~~~~a~ 155 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT-DATKRLVF-LK---DRL--AKYEYSVAE 155 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH-HHHHHHHH-HH---HHH--HHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH-HHHHHHHH-HH---HHH--HHHHHHHHH
Confidence 11122222222222234332110 00000000 00 000 011357899
Q ss_pred HHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 136 LLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 136 ~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
+|...|++.+|...++.++..-.. ....-+.......++...|++..|...+..+...
T Consensus 156 ~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 156 YYTERGAWVAVVNRVEGMLRDYPD---TQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHSTT---SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHcCcHHHHHHHHHHHHHHCcC---CCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 999999999999999998765322 1233466677788999999999999998866543
No 54
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.56 E-value=0.005 Score=61.39 Aligned_cols=98 Identities=15% Similarity=0.186 Sum_probs=55.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh---hCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS---LRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~---~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
.++.++...|++++|...+...+.......+.......+.....++.. .|++.+|...+.++...... + .
T Consensus 377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~---~----~ 449 (514)
T 2gw1_A 377 FFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR---S----E 449 (514)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTT---C----H
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcc---c----H
Confidence 566677777777777776666654332221111123344445566666 77777777777666554211 1 1
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
.....-|.++...|+|..|..+|-.+..
T Consensus 450 ~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 450 QAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 2233455666667777777777766655
No 55
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.55 E-value=0.0023 Score=61.33 Aligned_cols=204 Identities=12% Similarity=0.009 Sum_probs=96.1
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
....|..+. ..+.++|++.|...++..+.. ..++..++.++...|+++...+.+.......+..+..
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~----- 135 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGD-------AEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKA----- 135 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHH-----
Confidence 455566654 446899999999998865533 2367788999999999999888888776644322111
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH----hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccch
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL----RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKL 164 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l----r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~ 164 (422)
...+-..+....+ .+.-++.++..++........|. ...+...++.++...|++++|.+.+...+.. .+..
T Consensus 136 ~~~l~~~~~~~g~-~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~ 210 (365)
T 4eqf_A 136 LMALAVSYTNTSH-QQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ----NGDM 210 (365)
T ss_dssp HHHHHHHHHHTTC-HHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH----SCSS
T ss_pred HHHHHHHHHcccc-HHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh----CcCc
Confidence 1111221211211 23333344444433221111111 0112335555555555666655555555432 1110
Q ss_pred hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 165 LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 165 ~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...+++.....++...|++.+|...+.++...... + ......-|..+...++|..|...|-.+...
T Consensus 211 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 276 (365)
T 4eqf_A 211 IDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE---D----YSLWNRLGATLANGDRSEEAVEAYTRALEI 276 (365)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 11223333344555555555555555555443110 0 112233444455555555555555555443
No 56
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=97.54 E-value=0.005 Score=63.01 Aligned_cols=203 Identities=10% Similarity=-0.081 Sum_probs=116.3
Q ss_pred HHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhH-------
Q 014555 13 IAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAK------- 84 (422)
Q Consensus 13 ~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~------- 84 (422)
.+..+... +.++|++.|..+++....+. .++..++..+.+.|+++...+.+..+....+.-+...
T Consensus 311 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 311 KADTLFVRSRFIDVLAITTKILEIDPYNL-------DVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCC-------TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHcCcccH-------HHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence 45555444 68999999999986543221 2455678888999999998888877764332111110
Q ss_pred --------HHHHHHHHHHHhhcCCCChhHH----------------HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhc
Q 014555 85 --------TAKIVRGIIDAVAKIPGTSELQ----------------IALCKEMVQWTRAEKRTFLRQRVEARLAALLMES 140 (422)
Q Consensus 85 --------~~k~v~~~l~~~~~~~~~~~~~----------------~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~ 140 (422)
+.+..+++++ ..|+..... +++++..++....+.. .-..++..|...
T Consensus 384 ~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~ 454 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSST---MDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHL------PYLFLGMQHMQL 454 (597)
T ss_dssp HHTTCHHHHHHHHHHHHH---HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSH------HHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHH---hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH------HHHHHHHHHHHc
Confidence 1111222221 122211111 1111111111000111 122566777777
Q ss_pred ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch
Q 014555 141 REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE 220 (422)
Q Consensus 141 g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~ 220 (422)
|++++|.+.+...+.. .+. ....+...+.++...|++.+|...+.++.........+|.........-|..+..
T Consensus 455 g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 455 GNILLANEYLQSSYAL----FQY--DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp TCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 7777777777666532 111 2244556677888889999998888887766444333555445556667777788
Q ss_pred hhcHHHHHHHHHHHhhh
Q 014555 221 EKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 221 ~~dy~~A~~~f~ea~~~ 237 (422)
.|+|..|...|-.+...
T Consensus 529 ~g~~~~A~~~~~~~~~~ 545 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLL 545 (597)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 89999988888877653
No 57
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=97.54 E-value=0.0056 Score=54.43 Aligned_cols=186 Identities=10% Similarity=0.043 Sum_probs=117.4
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.+.++|++.|...++..+.+ ..++..++.++...|+++...+.+.......+..+ .....+...+...
T Consensus 37 ~~~~~A~~~~~~~l~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~la~~~~~~ 104 (243)
T 2q7f_A 37 GDYEKAAEAFTKAIEENKED-------AIPYINFANLLSSVNELERALAFYDKALELDSSAA-----TAYYGAGNVYVVK 104 (243)
T ss_dssp -----CCTTHHHHHTTCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHT
T ss_pred hCHHHHHHHHHHHHHhCccc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcch-----HHHHHHHHHHHHh
Confidence 35789999999988865533 24677889999999999999888887776443221 1112222222222
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
.+ .+.-++.++..++........ -..++.++...|++++|.+.+...+.... . ..+++.....++..
T Consensus 105 ~~-~~~A~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~ 171 (243)
T 2q7f_A 105 EM-YKEAKDMFEKALRAGMENGDL------FYMLGTVLVKLEQPKLALPYLQRAVELNE----N--DTEARFQFGMCLAN 171 (243)
T ss_dssp TC-HHHHHHHHHHHHHHTCCSHHH------HHHHHHHHHHTSCHHHHHHHHHHHHHHCT----T--CHHHHHHHHHHHHH
T ss_pred cc-HHHHHHHHHHHHHhCCCCHHH------HHHHHHHHHHhccHHHHHHHHHHHHHhCC----c--cHHHHHHHHHHHHH
Confidence 22 233355566665543222222 33788899999999999988888764311 1 23455566778889
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
.|++.+|...+.++...... + ......-|.++...++|..|..+|-.+...
T Consensus 172 ~~~~~~A~~~~~~~~~~~~~---~----~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 172 EGMLDEALSQFAAVTEQDPG---H----ADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HTCCHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCcc---c----HHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 99999999998887665211 1 223455677778889999998888887653
No 58
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=97.52 E-value=0.01 Score=56.11 Aligned_cols=171 Identities=9% Similarity=0.066 Sum_probs=109.7
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccch-hHHHHHHHHHHHHhhcC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPK-AKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k-~~~~k~v~~~l~~~~~~ 99 (422)
+.++|++.|...+......+ +....-.++..++.++...|+++.-.+.+..-......... .........+-..+..
T Consensus 51 ~~~~A~~~~~~al~~~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~- 128 (307)
T 2ifu_A 51 QLEQAKDAYLQEAEAHANNR-SLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP- 128 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-
Confidence 45566665555443211000 01233457778888888889888887777766554432222 2233444555555543
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
+..+.-++.++..++.....+........-..++.+|...|+|++|++.+...+.-.............++....+++.
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 3334447778888887655443333333456899999999999999999998876554443333344566777788889
Q ss_pred hCCHHHHHHHHHHHH
Q 014555 180 LRNLPKAKAALTAAR 194 (422)
Q Consensus 180 ~~n~~kak~~l~~a~ 194 (422)
.|++.+|...+.++.
T Consensus 208 ~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 208 RADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 999999999999887
No 59
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.51 E-value=0.044 Score=50.62 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=44.5
Q ss_pred chHHHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh
Q 014555 10 TDSIAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF 77 (422)
Q Consensus 10 ~~~~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 77 (422)
....|..+.. .+.++|++.|...++..+.. ..+...++..+...|+++...+.+.......
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 85 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPER-------EEAWRSLGLTQAENEKDGLAIIALNHARMLD 85 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4556666544 46899999999988765433 2355678889999999999888887766544
No 60
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.49 E-value=0.016 Score=50.39 Aligned_cols=194 Identities=8% Similarity=-0.046 Sum_probs=111.5
Q ss_pred HHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 14 AQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 14 ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
+..+. ..+.++|++.|...++..+... .+...++.++...|+++...+.+.......+.-+ .....+
T Consensus 15 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~l 82 (225)
T 2vq2_A 15 AMEYMRGQDYRQATASIEDALKSDPKNE-------LAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSA-----EINNNY 82 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhCccch-------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh-----HHHHHH
Confidence 44443 3468899999998887654332 2667788889999999988888877665433211 111222
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLL 172 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~ 172 (422)
...+...++..+.-++.++..++.....+... +-..++.++...|++++|.+.+...+... +. ..+++..
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~ 152 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYI----ANLNKGICSAKQGQFGLAEAYLKRSLAAQ----PQ--FPPAFKE 152 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHHS----TT--CHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CC--CchHHHH
Confidence 22333220222333455555544000011111 13377888888888888888887765431 11 1344555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
.+.++...|++.+|...+..+...... .++ ......+.++...+++..|..++-.+.
T Consensus 153 la~~~~~~~~~~~A~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~ 209 (225)
T 2vq2_A 153 LARTKMLAGQLGDADYYFKKYQSRVEV--LQA----DDLLLGWKIAKALGNAQAAYEYEAQLQ 209 (225)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHCS--CCH----HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC--CCH----HHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 677788888888888888877654320 111 123455666667777776665544443
No 61
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=97.44 E-value=0.0085 Score=57.28 Aligned_cols=196 Identities=16% Similarity=0.118 Sum_probs=109.4
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH-HHHHHHHhhcC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI-VRGIIDAVAKI 99 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~-v~~~l~~~~~~ 99 (422)
+.++|++.|...++..+.. ..++..++.++...|+++...+.+.......+..+....... +-.+...+...
T Consensus 114 ~~~~A~~~~~~al~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~ 186 (365)
T 4eqf_A 114 NEQAAIVALQRCLELQPNN-------LKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS 186 (365)
T ss_dssp CHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred CHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence 5788888888877654432 235677888888888888887777766653322111111000 00000011100
Q ss_pred CCChhHHHHHHHHHHHHHH---hcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 100 PGTSELQIALCKEMVQWTR---AEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~---~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
-....-++..++..+ ...........-..++.++...|++++|.+.+...+.. .+. ...++.....+
T Consensus 187 ----~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~ 256 (365)
T 4eqf_A 187 ----PVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV----RPE--DYSLWNRLGAT 256 (365)
T ss_dssp ------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHH
T ss_pred ----HhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHH
Confidence 001111222222221 11111113455667888888888888888888777643 111 23455556778
Q ss_pred HHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 177 HFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 177 ~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
+...|++.+|...+.++.... |.. ......-|.++...|+|..|..+|-.+......
T Consensus 257 ~~~~g~~~~A~~~~~~al~~~------p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 313 (365)
T 4eqf_A 257 LANGDRSEEAVEAYTRALEIQ------PGF-IRSRYNLGISCINLGAYREAVSNFLTALSLQRK 313 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC------TTC-HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred HHHcCCHHHHHHHHHHHHhcC------CCc-hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 888888888888888776652 111 233445677777888888888888887665543
No 62
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.43 E-value=0.0082 Score=53.92 Aligned_cols=189 Identities=15% Similarity=0.023 Sum_probs=114.3
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.+.++|++.|...++..+.. ..++..++.++...|+++...+.+.......+.-+ .....+...+...
T Consensus 51 ~~~~~A~~~~~~al~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~ 118 (252)
T 2ho1_A 51 GNTEQAKVPLRKALEIDPSS-------ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA-----RVLNNYGGFLYEQ 118 (252)
T ss_dssp TCTGGGHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhcCCCh-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----HHHHHHHHHHHHH
Confidence 35678888888777654322 23667888899999999998888887766443221 1112222222222
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
.+ .+.-++.++..++ . ....... ..-..++.++...|++++|.+.+...+.. .+. ..+++...+.++..
T Consensus 119 g~-~~~A~~~~~~~~~-~-~~~~~~~--~~~~~la~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~ 187 (252)
T 2ho1_A 119 KR-YEEAYQRLLEASQ-D-TLYPERS--RVFENLGLVSLQMKKPAQAKEYFEKSLRL----NRN--QPSVALEMADLLYK 187 (252)
T ss_dssp TC-HHHHHHHHHHHTT-C-TTCTTHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSC--CHHHHHHHHHHHHH
T ss_pred hH-HHHHHHHHHHHHh-C-ccCcccH--HHHHHHHHHHHHcCCHHHHHHHHHHHHhc----Ccc--cHHHHHHHHHHHHH
Confidence 21 2222444444443 0 0111111 12347888999999999999888887643 111 23455566778889
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
.|++.+|...+..+.... |.. .......|.++...+++..|..+|-.+...+
T Consensus 188 ~g~~~~A~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 188 EREYVPARQYYDLFAQGG-----GQN--ARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp TTCHHHHHHHHHHHHTTS-----CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHhC-----cCc--HHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999998888775532 111 1223455666778889999888887776544
No 63
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=97.41 E-value=0.036 Score=55.03 Aligned_cols=195 Identities=8% Similarity=0.007 Sum_probs=130.2
Q ss_pred cCChHHHHHHHHhhcC-----C--CCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHH
Q 014555 19 ASNPSDAISMLYRVLD-----D--PSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRG 91 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~-----~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~ 91 (422)
..+.++|++.|...++ . .+.+.+.......++..++..+...|+++...+.+.......+. ......
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~------~~~~~~ 275 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR------VNSYIY 275 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC------HHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc------HHHHHH
Confidence 3468999999999887 4 33222223466778899999999999999999988887764432 222333
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
+...+....+ .+.-++.++..++........ -..++.++...|++++|...+...+.. .+. ..+.+.
T Consensus 276 l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~ 342 (514)
T 2gw1_A 276 MALIMADRND-STEYYNYFDKALKLDSNNSSV------YYHRGQMNFILQNYDQAGKDFDKAKEL----DPE--NIFPYI 342 (514)
T ss_dssp HHHHHHTSSC-CTTGGGHHHHHHTTCTTCTHH------HHHHHHHHHHTTCTTHHHHHHHHHHHT----CSS--CSHHHH
T ss_pred HHHHHHHCCC-HHHHHHHHHHHhhcCcCCHHH------HHHHHHHHHHhCCHHHHHHHHHHHHHh----Chh--hHHHHH
Confidence 3333332222 122244555555432222222 337899999999999999999887642 221 233555
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
....++...|++.+|...+.++...... ++ .....-|.++...++|..|...|-.+.....
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 403 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPE---AP----EVPNFFAEILTDKNDFDKALKQYDLAIELEN 403 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTT---CS----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHccc---CH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhh
Confidence 5678899999999999999988765321 22 2344568888899999999999988876544
No 64
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.34 E-value=0.019 Score=52.00 Aligned_cols=59 Identities=8% Similarity=-0.084 Sum_probs=42.7
Q ss_pred chHHHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhch
Q 014555 10 TDSIAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRP 75 (422)
Q Consensus 10 ~~~~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~ 75 (422)
++..|..+... +.++|++.|...++..+.+.+ ++..++.++...|+++...+.+.....
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~-------~~~~l~~~~~~~~~~~~A~~~~~~a~~ 65 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY-------IYNRRAVCYYELAKYDLAQKDIETYFS 65 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST-------THHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH-------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 55666666544 689999999999887653321 566788899999999887766665554
No 65
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=97.33 E-value=0.0094 Score=54.10 Aligned_cols=213 Identities=9% Similarity=-0.041 Sum_probs=131.5
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHH
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRG 91 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~ 91 (422)
-+.... ..+.++|++.|...++... +. .....++..++.++...|+++...+.+.......+..+. ....
T Consensus 43 l~~~~~~~~~~~~A~~~~~~a~~~~~-~~---~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~ 113 (272)
T 3u4t_A 43 RAVCYYELAKYDLAQKDIETYFSKVN-AT---KAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLD-----MYGQ 113 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTSC-TT---TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH-----HHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhccC-ch---hHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHH-----HHHH
Confidence 444443 3468999999999998432 21 234667889999999999999999888887765443221 1222
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
+-..+....+ .+.-++.++..++........ -..++......+++++|.+.+...+.. ++.. ...+.
T Consensus 114 l~~~~~~~~~-~~~A~~~~~~al~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~a~~~----~p~~--~~~~~ 180 (272)
T 3u4t_A 114 IGSYFYNKGN-FPLAIQYMEKQIRPTTTDPKV------FYELGQAYYYNKEYVKADSSFVKVLEL----KPNI--YIGYL 180 (272)
T ss_dssp HHHHHHHTTC-HHHHHHHHGGGCCSSCCCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTC--HHHHH
T ss_pred HHHHHHHccC-HHHHHHHHHHHhhcCCCcHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHh----Cccc--hHHHH
Confidence 2222221211 122233333332221011112 236773444456999999999887643 2211 44555
Q ss_pred HHHHHHHhhCC---HHHHHHHHHHHHHhhccCCCCc--hhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhH
Q 014555 172 LESKLHFSLRN---LPKAKAALTAARTAANAIYVPP--AQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRA 246 (422)
Q Consensus 172 ~~~~~~~~~~n---~~kak~~l~~a~~~~~~i~~~~--~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~ 246 (422)
...+++...++ +.+|...++++.......+ ++ .........-|.++...++|..|..+|-.+..-.+ +++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p--~~~~a 257 (272)
T 3u4t_A 181 WRARANAAQDPDTKQGLAKPYYEKLIEVCAPGG-AKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDP--TNKKA 257 (272)
T ss_dssp HHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGG-GGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHH
T ss_pred HHHHHHHHcCcchhhHHHHHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--cHHHH
Confidence 56778888888 8889999999887765544 22 22334556678888899999999999999876443 34555
Q ss_pred HHHH
Q 014555 247 VFSL 250 (422)
Q Consensus 247 ~~~l 250 (422)
.+.+
T Consensus 258 ~~~l 261 (272)
T 3u4t_A 258 IDGL 261 (272)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 5543
No 66
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.29 E-value=0.1 Score=50.13 Aligned_cols=53 Identities=6% Similarity=0.045 Sum_probs=38.5
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
..+.++|+..+...++..+.. ..++..++..+...|+++.-.+.+.......+
T Consensus 46 ~~~~~~a~~~~~~a~~~~p~~-------~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 98 (388)
T 1w3b_A 46 CRRLDRSAHFSTLAIKQNPLL-------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKP 98 (388)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred cCCHHHHHHHHHHHHhcCCCc-------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCc
Confidence 446788888888887765433 23677888888889998888888877665443
No 67
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=97.28 E-value=0.051 Score=48.27 Aligned_cols=177 Identities=12% Similarity=0.028 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH-
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF- 124 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~- 124 (422)
.-.++..++..++..|+++...+.+....... .-+.. ...+-..+....+ .+.-++.+...++...+.+..+
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~-----~~~~~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITY-----LNNRAAAEYEKGE-YETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHH-----HHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHH-----HHHHHHHHHHccc-HHHHHHHHHHHHHhCcccccchH
Confidence 34678899999999999999998888777644 22221 1222222222222 2334566666666543321111
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--------------------ccchhHHHHHHHHHHHHHhhCCHH
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL--------------------DDKLLLVDIDLLESKLHFSLRNLP 184 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~--------------------~~~~~~~e~~l~~~~~~~~~~n~~ 184 (422)
.....-..++.++...|++++|.+.+...+...... .......+++.....++...|++.
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHH
Confidence 012224589999999999999999998876521100 011223455566667777777777
Q ss_pred HHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 185 KAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 185 kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+|...+.++...... + ......-|..+...++|..|..+|-.+..
T Consensus 157 ~A~~~~~~a~~~~~~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 201 (258)
T 3uq3_A 157 NAVKAYTEMIKRAPE---D----ARGYSNRAAALAKLMSFPEAIADCNKAIE 201 (258)
T ss_dssp HHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcc---c----HHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777777776554211 1 23344456666777777777777777655
No 68
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.27 E-value=0.053 Score=45.26 Aligned_cols=168 Identities=13% Similarity=0.044 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
...++..++..+...|+++...+.+.......+.-+ .....+...+... +..+.-++.++..++........
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~-- 78 (186)
T 3as5_A 7 RQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV-----DVALHLGIAYVKT-GAVDRGTELLERSLADAPDNVKV-- 78 (186)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH-----HHHHHHHHHHHHT-TCHHHHHHHHHHHHHHCTTCHHH--
T ss_pred hhHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh-----HHHHHHHHHHHHc-CCHHHHHHHHHHHHhcCCCCHHH--
Confidence 456778899999999999999988887775443221 1112222222212 21233355555555542222222
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
-..++.++...|++++|.+.+....... +. ...++.....++...|++.+|...+.++...... +
T Consensus 79 ----~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~---~-- 143 (186)
T 3as5_A 79 ----ATVLGLTYVQVQKYDLAVPLLIKVAEAN----PI--NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPN---E-- 143 (186)
T ss_dssp ----HHHHHHHHHHHTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C--
T ss_pred ----HHHHHHHHHHhcCHHHHHHHHHHHHhcC----cH--hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCcc---c--
Confidence 3378899999999999999888876431 11 2345566678899999999999999888665311 1
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
......-|.++...++|..|..+|-.+....
T Consensus 144 --~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 144 --GKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 2334556777788899999998888776543
No 69
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=97.27 E-value=0.028 Score=52.05 Aligned_cols=198 Identities=13% Similarity=-0.023 Sum_probs=104.3
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccc------------------
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIP------------------ 81 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~------------------ 81 (422)
.+.++|++.|...++..+.. ..++..++.++...|+++...+.+.......+..+
T Consensus 69 ~~~~~A~~~~~~a~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (327)
T 3cv0_A 69 EKDGLAIIALNHARMLDPKD-------IAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV 141 (327)
T ss_dssp TCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred CCHHHHHHHHHHHHhcCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence 46899999999988765433 23677889999999999998888877665332111
Q ss_pred ---------hhHHHHHHHHHHHHhhcCCCChhHH----------------HHHHHHHHHHHHhcchhHHhhHHHHHHHHH
Q 014555 82 ---------KAKTAKIVRGIIDAVAKIPGTSELQ----------------IALCKEMVQWTRAEKRTFLRQRVEARLAAL 136 (422)
Q Consensus 82 ---------k~~~~k~v~~~l~~~~~~~~~~~~~----------------~~l~~~~i~~~~~~~r~~lr~~l~~~La~~ 136 (422)
.....+.+..+-..+...|+..... ++.+...++..... ...-..++.+
T Consensus 142 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~ 215 (327)
T 3cv0_A 142 QSEDFFFAAPNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGAT 215 (327)
T ss_dssp ----CCTTSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHH
T ss_pred HHHhHHHHHcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHH
Confidence 1111222222222222223221111 11111111110000 1112366677
Q ss_pred HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCC-----chhhHHHH
Q 014555 137 LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVP-----PAQQGTID 211 (422)
Q Consensus 137 ~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~-----~~i~a~i~ 211 (422)
+...|++++|.+.++..+..- +. ..+.+.....++...|++.+|...+.++.........+ ........
T Consensus 216 ~~~~~~~~~A~~~~~~a~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 289 (327)
T 3cv0_A 216 LANGNRPQEALDAYNRALDIN----PG--YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMW 289 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHH
Confidence 777777777776666654321 11 22344445667777777777777777766554321100 01133444
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-|..+...+++..|...|-.+..
T Consensus 290 ~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 290 DFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5566666677777777766654443
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=97.26 E-value=0.045 Score=47.47 Aligned_cols=170 Identities=7% Similarity=-0.106 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
...+...++..+...|+++...+.+.......+..+. ....+...+....+ .+.-++.++..++........
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~-- 78 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL-----AWLVRAEIYQYLKV-NDKAQESFRQALSIKPDSAEI-- 78 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH--
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH-----HHHHHHHHHHHcCC-hHHHHHHHHHHHHhCCCChHH--
Confidence 3457788999999999999999888877765443211 11222222222222 233355666665543222112
Q ss_pred hhHHHHHHHHHHHhc-ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 126 RQRVEARLAALLMES-REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 126 r~~l~~~La~~~~~~-g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
-..++.++... |++++|.+.+...+. .. .......++.....++...|++.+|...+.++...... +
T Consensus 79 ----~~~l~~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~- 146 (225)
T 2vq2_A 79 ----NNNYGWFLCGRLNRPAESMAYFDKALA--DP--TYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ---F- 146 (225)
T ss_dssp ----HHHHHHHHHTTTCCHHHHHHHHHHHHT--ST--TCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---C-
T ss_pred ----HHHHHHHHHHhcCcHHHHHHHHHHHHc--Cc--CCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C-
Confidence 34789999999 999999999988875 11 11223456666788999999999999999888665211 1
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
......-|.++...++|..|...|-.+....
T Consensus 147 ---~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 177 (225)
T 2vq2_A 147 ---PPAFKELARTKMLAGQLGDADYYFKKYQSRV 177 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---chHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 2234456777888999999999888876643
No 71
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=97.25 E-value=0.0038 Score=51.00 Aligned_cols=101 Identities=9% Similarity=0.103 Sum_probs=80.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..|+..++..|+|++|++.+++.+.- ++. ...++.....+|+..|++.+|...+.++..+...........+..
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~----~p~--~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 85 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL----DPS--NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKA 85 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHH
Confidence 37899999999999999999887642 222 245666678899999999999999999987765443344566777
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...-|..+...++|..|..+|-.+...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 777899999999999999999888763
No 72
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=97.24 E-value=0.03 Score=47.77 Aligned_cols=165 Identities=13% Similarity=0.006 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
..++..++..+.+.|++++-.+.+......-+.-+.+ ...+-..+....+ .+.-++.+...+....+. ..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~-----~~~la~~~~~~~~-~~~a~~~~~~~~~~~~~~--~~-- 74 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVET-----LLKLGKTYMDIGL-PNDAIESLKKFVVLDTTS--AE-- 74 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHHTTC-HHHHHHHHHHHHHHCCCC--HH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-----HHHHHHHHHHCCC-HHHHHHHHHHHHhcCchh--HH--
Confidence 3467889999999999999999988877654432221 1222222222222 222344444444332111 11
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
....++.++...+++++|.+.+...... ++. ..+.+.....++...|++.+|...++++..+. |.-
T Consensus 75 --~~~~~~~~~~~~~~~~~a~~~~~~a~~~----~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~------p~~ 140 (184)
T 3vtx_A 75 --AYYILGSANFMIDEKQAAIDALQRAIAL----NTV--YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK------PGF 140 (184)
T ss_dssp --HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC
T ss_pred --HHHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc--chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc------chh
Confidence 1347788899999999999888776532 221 23445556789999999999999999887663 111
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
......-|.++...|+|.+|..+|-.+.+
T Consensus 141 -~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 169 (184)
T 3vtx_A 141 -IRAYQSIGLAYEGKGLRDEAVKYFKKALE 169 (184)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 23345578888899999999999998875
No 73
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.18 E-value=0.0078 Score=56.79 Aligned_cols=155 Identities=10% Similarity=-0.006 Sum_probs=108.3
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc-----CChhHHHHHHHHHHHHHHhcCccchhhhhccccc--cc-ccC
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL-----EDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAG--LQ-YVG 280 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~-----~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~--~~-~~~ 280 (422)
.+.+.++++.+..+|+..--+++-.-..-|... .++.....+.|-+|+.+..+...++|..+..... .. .++
T Consensus 60 ~v~E~~a~~si~~~D~~~F~~~~~QLk~~Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d 139 (274)
T 4b4t_T 60 RILEVGALASIQTFNFDSFENYFNQLKPYYFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDD 139 (274)
T ss_dssp -CHHHHHHCCSSCSSHHHHHHHHHHHHHHTTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcC
Confidence 356778888888888775444444433333221 2356677888888888888888888764443211 11 145
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCC-hHH
Q 014555 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELP-IDH 359 (422)
Q Consensus 281 ~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~-~~e 359 (422)
|-+..-..|.+++..|+|.+|.++...-. .-.+.+.-.++.+..++|...+.-+.+.|.+|+++++++.|+++ .++
T Consensus 140 ~~Ik~al~le~al~eGnY~kff~l~~~~~---~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e 216 (274)
T 4b4t_T 140 SLLSYPIKLDRWLMEGSYQKAWDLLQSGS---QNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKE 216 (274)
T ss_dssp HHHHHHHHHHHHHHHTCSHHHHHHHHTCT---TCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHhcCC---CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHH
Confidence 66777788999999999999998765421 01123344567899999999999999999999999999999996 677
Q ss_pred HHHHHHh
Q 014555 360 VEKKLSQ 366 (422)
Q Consensus 360 vE~~l~~ 366 (422)
+...+-+
T Consensus 217 ~~~F~~~ 223 (274)
T 4b4t_T 217 TEKFALE 223 (274)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7766654
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=97.15 E-value=0.078 Score=47.73 Aligned_cols=186 Identities=8% Similarity=-0.058 Sum_probs=115.5
Q ss_pred ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 21 NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 21 ~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
+.++|++.|..+++....+. .....++..++..+...|+++.-.+.+.......+.-+... ..+-..+....
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-----~~la~~~~~~~ 91 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTD---DERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF-----NYLGIYLTQAG 91 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH-----HHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHhcccccC---chhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH-----HHHHHHHHHcc
Confidence 57999999999998743222 24567889999999999999999988888776544322211 12222222222
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
+ .+.-++.++..++........ -..++.++...|++++|.+.+...+.... ++. .... ...++...
T Consensus 92 ~-~~~A~~~~~~al~~~~~~~~~------~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~--~~~~---~~~~~~~~ 157 (275)
T 1xnf_A 92 N-FDAAYEAFDSVLELDPTYNYA------HLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDP--FRSL---WLYLAEQK 157 (275)
T ss_dssp C-HHHHHHHHHHHHHHCTTCTHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH--HHHH---HHHHHHHH
T ss_pred C-HHHHHHHHHHHHhcCccccHH------HHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCh--HHHH---HHHHHHHh
Confidence 2 233356666666643222222 33889999999999999999988865321 111 1111 12344667
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 181 ~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
|++.+|...+.++...... ++.. ...+.++...+++..|...|-.++.
T Consensus 158 ~~~~~A~~~~~~~~~~~~~---~~~~-----~~~~~~~~~~~~~~~a~~~~~~~~~ 205 (275)
T 1xnf_A 158 LDEKQAKEVLKQHFEKSDK---EQWG-----WNIVEFYLGNISEQTLMERLKADAT 205 (275)
T ss_dssp HCHHHHHHHHHHHHHHSCC---CSTH-----HHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred cCHHHHHHHHHHHHhcCCc---chHH-----HHHHHHHHHhcCHHHHHHHHHHHhc
Confidence 9999999988776554321 1111 1244445567777777777777654
No 75
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=97.14 E-value=0.16 Score=48.62 Aligned_cols=53 Identities=9% Similarity=0.007 Sum_probs=37.1
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
..+.++|++.|...++..+... .++..++..+.+.|++++-.+.+.......+
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 132 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFI-------DGYINLAAALVAAGDMEGAVQAYVSALQYNP 132 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT
T ss_pred CCCHHHHHHHHHHHHHcCcchH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3468899999998887654332 2456778888888888887777776665443
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=97.11 E-value=0.055 Score=45.16 Aligned_cols=155 Identities=12% Similarity=-0.001 Sum_probs=102.5
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
..++++|++.|...++..+.. ..++..++.++...|+++...+.+.......+.-+.. ...+...+..
T Consensus 21 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----~~~~a~~~~~ 88 (186)
T 3as5_A 21 AGRYSQAVMLLEQVYDADAFD-------VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKV-----ATVLGLTYVQ 88 (186)
T ss_dssp HTCHHHHHHHHTTTCCTTSCC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-----HHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCccC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHH-----HHHHHHHHHH
Confidence 457899999999998875533 2467788999999999999998888777644322111 1111121211
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
..+ .+.-++.++..+......... -..++.++...|++++|.+.+....... +. ..+++...+.++.
T Consensus 89 ~~~-~~~A~~~~~~~~~~~~~~~~~------~~~~a~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~ 155 (186)
T 3as5_A 89 VQK-YDLAVPLLIKVAEANPINFNV------RFRLGVALDNLGRFDEAIDSFKIALGLR----PN--EGKVHRAIAFSYE 155 (186)
T ss_dssp HTC-HHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHH
T ss_pred hcC-HHHHHHHHHHHHhcCcHhHHH------HHHHHHHHHHcCcHHHHHHHHHHHHhcC----cc--chHHHHHHHHHHH
Confidence 111 222345555555432222122 3478999999999999999998876542 11 2455666788999
Q ss_pred hhCCHHHHHHHHHHHHHhhc
Q 014555 179 SLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~~ 198 (422)
..|++.+|...+..+.....
T Consensus 156 ~~~~~~~A~~~~~~~~~~~~ 175 (186)
T 3as5_A 156 QMGRHEEALPHFKKANELDE 175 (186)
T ss_dssp HTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHcCC
Confidence 99999999999998876543
No 77
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=97.10 E-value=0.19 Score=47.07 Aligned_cols=189 Identities=15% Similarity=0.072 Sum_probs=120.0
Q ss_pred HHHhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHH
Q 014555 14 AQAKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGII 93 (422)
Q Consensus 14 ak~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l 93 (422)
-..+-..+...||+.+..+....+ + ....+..-+++.+...|+++.....+.. . .......++.+.
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p---~---~~~e~~~~l~r~yi~~g~~~~al~~~~~-----~---~~~~~~a~~~la 72 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSP---E---RDVERDVFLYRAYLAQRKYGVVLDEIKP-----S---SAPELQAVRMFA 72 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSH---H---HHHHHHHHHHHHHHHTTCHHHHHHHSCT-----T---SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCc---h---hhHHHHHHHHHHHHHCCCHHHHHHHhcc-----c---CChhHHHHHHHH
Confidence 344556678999999988765432 1 1222445668899999999888865533 1 122345667777
Q ss_pred HHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHH
Q 014555 94 DAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLE 173 (422)
Q Consensus 94 ~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~ 173 (422)
+++....+ .+.-++.++..+..-..-+...+ ...++.++...|++++|++.+.. . ...+.+...
T Consensus 73 ~~~~~~~~-~~~A~~~l~~ll~~~~~P~~~~~----~~~la~~~~~~g~~~~Al~~l~~-------~----~~~~~~~~l 136 (291)
T 3mkr_A 73 EYLASHSR-RDAIVAELDREMSRSVDVTNTTF----LLMAASIYFYDQNPDAALRTLHQ-------G----DSLECMAMT 136 (291)
T ss_dssp HHHHCSTT-HHHHHHHHHHHHHSCCCCSCHHH----HHHHHHHHHHTTCHHHHHHHHTT-------C----CSHHHHHHH
T ss_pred HHHcCCCc-HHHHHHHHHHHHhcccCCCCHHH----HHHHHHHHHHCCCHHHHHHHHhC-------C----CCHHHHHHH
Confidence 77764332 23334555544431000111222 34889999999999999987775 1 235667777
Q ss_pred HHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHH--HHhchhhcHHHHHHHHHHHhhhhh
Q 014555 174 SKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSG--ILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 174 ~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g--~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
++++...|++..|...+.++.... + + .... ....| .++...++|.+|...|-++...+.
T Consensus 137 ~~~~~~~g~~~~A~~~l~~~~~~~---p-~-~~~~--~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p 197 (291)
T 3mkr_A 137 VQILLKLDRLDLARKELKKMQDQD---E-D-ATLT--QLATAWVSLAAGGEKLQDAYYIFQEMADKCS 197 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC---T-T-CHHH--HHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC---c-C-cHHH--HHHHHHHHHHhCchHHHHHHHHHHHHHHhCC
Confidence 889999999999999999887662 2 1 2211 22222 223356899999999998877543
No 78
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=97.09 E-value=0.043 Score=49.36 Aligned_cols=134 Identities=13% Similarity=0.077 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHHhcc--hhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHhhCC
Q 014555 107 IALCKEMVQWTRAEK--RTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL--DDKLLLVDIDLLESKLHFSLRN 182 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~--r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~--~~~~~~~e~~l~~~~~~~~~~n 182 (422)
+.++++.++...... ........-..++.++...|++++|...+...+...... .+......++.....++...|+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 100 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK 100 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc
Confidence 555666666543110 001122235589999999999999999999887665443 3345567778888999999999
Q ss_pred HHHHHHHHHHHHHhhccCC-CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 183 LPKAKAALTAARTAANAIY-VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 183 ~~kak~~l~~a~~~~~~i~-~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
+.+|...+.++........ .+..........-|.++...++|..|..+|-++...+..
T Consensus 101 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 159 (283)
T 3edt_B 101 YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYAT 159 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9999999999877654431 111334555666788888999999999999998876543
No 79
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=97.07 E-value=0.033 Score=52.77 Aligned_cols=203 Identities=16% Similarity=0.036 Sum_probs=110.8
Q ss_pred CChHHHHH-HHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHH------------H
Q 014555 20 SNPSDAIS-MLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKT------------A 86 (422)
Q Consensus 20 ~~~~~Ai~-~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~------------~ 86 (422)
.+.+.|++ .|...++..+.... ....++..++..++..|+++...+.+.......+.-+.... .
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPL---RDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp -------CHHHHCCCCCCSSCTT---TTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcc---cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHH
Confidence 45788998 88877765432211 11235567899999999999998888877764432221111 1
Q ss_pred HHHHHHHHHhhcCCCChhHHHHH----------------HHHHHHHHHhcchhHHhh----------HHHHHHHHHHHhc
Q 014555 87 KIVRGIIDAVAKIPGTSELQIAL----------------CKEMVQWTRAEKRTFLRQ----------RVEARLAALLMES 140 (422)
Q Consensus 87 k~v~~~l~~~~~~~~~~~~~~~l----------------~~~~i~~~~~~~r~~lr~----------~l~~~La~~~~~~ 140 (422)
+.+..+-..+...|+.......+ ++..++........+... .....++.++ ..
T Consensus 116 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 194 (368)
T 1fch_A 116 LAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SD 194 (368)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hc
Confidence 12222222222234332211111 111111000000000000 0000245555 88
Q ss_pred ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch
Q 014555 141 REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE 220 (422)
Q Consensus 141 g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~ 220 (422)
|++++|...+...+.. ++......++.....++...|++.+|...+.++...... + ......-|.++..
T Consensus 195 ~~~~~A~~~~~~a~~~----~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~---~----~~~~~~l~~~~~~ 263 (368)
T 1fch_A 195 SLFLEVKELFLAAVRL----DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN---D----YLLWNKLGATLAN 263 (368)
T ss_dssp HHHHHHHHHHHHHHHH----STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHh----CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC---C----HHHHHHHHHHHHH
Confidence 9999999999887643 221113455666788999999999999999988765211 1 2334557888888
Q ss_pred hhcHHHHHHHHHHHhhh
Q 014555 221 EKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 221 ~~dy~~A~~~f~ea~~~ 237 (422)
.++|..|...|-.+...
T Consensus 264 ~g~~~~A~~~~~~al~~ 280 (368)
T 1fch_A 264 GNQSEEAVAAYRRALEL 280 (368)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999888763
No 80
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=97.06 E-value=0.041 Score=49.17 Aligned_cols=168 Identities=12% Similarity=0.030 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
.-.++..++..+...|+++...+.+.......+..+ .....+-..+....+ .+.-++.++..++........
T Consensus 36 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~la~~~~~~~~-~~~A~~~~~~a~~~~~~~~~~-- 107 (252)
T 2ho1_A 36 ARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA-----DAHAALAVVFQTEME-PKLADEEYRKALASDSRNARV-- 107 (252)
T ss_dssp HHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCHHH--
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH-----HHHHHHHHHHHHcCC-HHHHHHHHHHHHHHCcCcHHH--
Confidence 356788999999999999998888877765433221 111222222222222 233355566665542222112
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
-..++.++...|++++|.+.+..... . ........++.....++...|++.+|...+.++...... +
T Consensus 108 ----~~~la~~~~~~g~~~~A~~~~~~~~~--~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~---~-- 174 (252)
T 2ho1_A 108 ----LNNYGGFLYEQKRYEEAYQRLLEASQ--D--TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN---Q-- 174 (252)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHTT--C--TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC---C--
T ss_pred ----HHHHHHHHHHHhHHHHHHHHHHHHHh--C--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc---c--
Confidence 34789999999999999999988764 1 112234556666788999999999999999988765311 1
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
......-|.++...++|..|...|-.+..
T Consensus 175 --~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 203 (252)
T 2ho1_A 175 --PSVALEMADLLYKEREYVPARQYYDLFAQ 203 (252)
T ss_dssp --HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 23345567778889999999988888765
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.89 E-value=0.05 Score=48.19 Aligned_cols=138 Identities=11% Similarity=-0.031 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ 127 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~ 127 (422)
.++...+..++..|+++.-.+.+.......+. ... .-......-+.. ..+ .+.-++.++..++.. .+ ....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~--~~~-~~~~~~~~~~~~-~~~-~~~A~~~~~~al~~~--p~--~~~~ 78 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN--QDS-VTAYNCGVCADN-IKK-YKEAADYFDIAIKKN--YN--LANA 78 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CCH-HHHHHHHHHHHH-TTC-HHHHHHHHHHHHHTT--CS--HHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCC--CCc-HHHHHHHHHHHH-hhc-HHHHHHHHHHHHHhC--cc--hHHH
Confidence 47788999999999999999888877764430 111 111121111111 211 233345555555421 11 2222
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 128 RVEARLAALLMESREYTEALTLLTSLVKEVRRLD-DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 128 ~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-..++.+|...|++++|.+.++..+.--.... -...+.+++.....++...|++.+|...+.++...
T Consensus 79 --~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 146 (228)
T 4i17_A 79 --YIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV 146 (228)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS
T ss_pred --HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc
Confidence 34899999999999999999988865321110 02235577888889999999999999999887554
No 82
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=96.83 E-value=0.019 Score=45.23 Aligned_cols=102 Identities=12% Similarity=0.072 Sum_probs=76.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+...+... +. ...++.....++...|++.+|...+.++.........++......
T Consensus 8 ~~l~~~~~~~~~~~~A~~~~~~a~~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 81 (131)
T 1elr_A 8 KELGNDAYKKKDFDTALKHYDKAKELD----PT--NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcC----Cc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHH
Confidence 478899999999999999998876431 11 235556667889999999999999998877654322122333555
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|.++...++|..|..+|-.+....
T Consensus 82 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 6677888899999999999998887643
No 83
>1wi9_A Protein C20ORF116 homolog; helix-turn-helix motif, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.4.5.47
Probab=96.79 E-value=0.0031 Score=46.36 Aligned_cols=58 Identities=12% Similarity=0.220 Sum_probs=53.0
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
..++.+++.-+.+.++++|..||++.+++-..+-.+..+|+|.|.||-..+.|.+++.
T Consensus 10 ~~Fi~yIk~~Kvv~LedLA~~F~l~t~~~i~RI~~Le~~g~ltGViDDRGKfIyIs~e 67 (72)
T 1wi9_A 10 TEFINYIKKSKVVLLEDLAFQMGLRTQDAINRIQDLLTEGTLTGVIDDRGKFIYITPS 67 (72)
T ss_dssp HHHHHHHHHCSEECHHHHHHHHCSCHHHHHHHHHHHHHHSSSCEEECTTCCEEECCCS
T ss_pred HHHHHHHHHcCeeeHHHHHHHhCCChHHHHHHHHHHHHCCCeEEEEeCCCCEEEecHH
Confidence 4567788888999999999999999999999999999999999999999999988764
No 84
>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18
Probab=96.77 E-value=0.0059 Score=55.90 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHH
Q 014555 248 FSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYD 327 (422)
Q Consensus 248 ~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~ 327 (422)
.++...+|.+|.....++.+.-+.-.......++.+..+..|.+...+|++..|-+.++. ++-+...+..|.+
T Consensus 64 ~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~-------~~~l~~~i~gf~d 136 (226)
T 1rz4_A 64 TVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDE-------NMDLLEGITGFED 136 (226)
T ss_dssp HHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCT-------TCHHHHTSTTHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhc-------ChhHHHHHhHHHH
Confidence 334445555555555555542111000001146788889999999999999988876532 3434455566788
Q ss_pred HHHHHHHHHhhcccccccchhHHHHhC-CChHHHHHHHHhhhhcCCcee-eeecCCCEEEE
Q 014555 328 TLLEQNLCRLIEPYSRVEIAHIAELIE-LPIDHVEKKLSQMILDKKFAG-TLDQGVGCLII 386 (422)
Q Consensus 328 ~i~~~~l~~i~~pYs~I~l~~la~~l~-l~~~evE~~l~~mI~~g~i~g-kIDq~~g~v~~ 386 (422)
.||......+...|++|+++.+++.|| ++.++++..+.+ .| ++| .+|.|.+
T Consensus 137 sIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~-------~GW~vd-~~g~I~~ 189 (226)
T 1rz4_A 137 SVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSK-------YGWSAD-ESGQIFI 189 (226)
T ss_dssp HHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHH-------HTCEEC-C--CEEC
T ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHH-------CCCEEC-CCccEEe
Confidence 888888888889999999999999995 889999988877 24 566 5566655
No 85
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=96.74 E-value=0.069 Score=42.28 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=75.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..+|..+...|+|++|.+.+..++..-. +.....+.+.....++...|++.+|...+.++...... ++ .....
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~---~~-~~~~~ 78 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYP---NGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT---HD-KAAGG 78 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCS---SSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---ST-THHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC---Cc-ccHHH
Confidence 3778899999999999999998865321 22233356666788999999999999999887665321 21 12333
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...|+|..|...|-.+...+.
T Consensus 79 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 79 LLKLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 45578888899999999999998887664
No 86
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=96.70 E-value=0.2 Score=46.91 Aligned_cols=209 Identities=12% Similarity=0.056 Sum_probs=121.3
Q ss_pred HHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHH
Q 014555 13 IAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRG 91 (422)
Q Consensus 13 ~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~ 91 (422)
.+++... .+++.|+..+.. . +.. ...++..++..+...|+++...+.+..+...- .-|.+...-. ..
T Consensus 40 l~r~yi~~g~~~~al~~~~~----~-~~~-----~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~-~~P~~~~~~~-~l 107 (291)
T 3mkr_A 40 LYRAYLAQRKYGVVLDEIKP----S-SAP-----ELQAVRMFAEYLASHSRRDAIVAELDREMSRS-VDVTNTTFLL-MA 107 (291)
T ss_dssp HHHHHHHTTCHHHHHHHSCT----T-SCH-----HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSC-CCCSCHHHHH-HH
T ss_pred HHHHHHHCCCHHHHHHHhcc----c-CCh-----hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcc-cCCCCHHHHH-HH
Confidence 3566544 468999987654 2 222 24688889999999999999988888765321 0123322111 11
Q ss_pred HHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHH
Q 014555 92 IIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDL 171 (422)
Q Consensus 92 ~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l 171 (422)
..-+.. . +..+.-++.+.. .+ .... ...++.+|...|++++|.+.+..++.. ++......+..
T Consensus 108 a~~~~~-~-g~~~~Al~~l~~-------~~--~~~~--~~~l~~~~~~~g~~~~A~~~l~~~~~~----~p~~~~~~l~~ 170 (291)
T 3mkr_A 108 ASIYFY-D-QNPDAALRTLHQ-------GD--SLEC--MAMTVQILLKLDRLDLARKELKKMQDQ----DEDATLTQLAT 170 (291)
T ss_dssp HHHHHH-T-TCHHHHHHHHTT-------CC--SHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred HHHHHH-C-CCHHHHHHHHhC-------CC--CHHH--HHHHHHHHHHCCCHHHHHHHHHHHHhh----CcCcHHHHHHH
Confidence 111111 1 111111222222 11 1112 347899999999999999999988653 22222222222
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHH
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLK 251 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lk 251 (422)
.-..++...|++..|...++++.... |+. ..+...-|..++..|+|.+|...|-++..... +++ .++.
T Consensus 171 a~~~l~~~~~~~~eA~~~~~~~l~~~-----p~~--~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p--~~~---~~l~ 238 (291)
T 3mkr_A 171 AWVSLAAGGEKLQDAYYIFQEMADKC-----SPT--LLLLNGQAACHMAQGRWEAAEGVLQEALDKDS--GHP---ETLI 238 (291)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHHS-----CCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCH---HHHH
T ss_pred HHHHHHhCchHHHHHHHHHHHHHHhC-----CCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCH---HHHH
Confidence 22344455689999999998876651 221 33455578888999999999999999986432 233 3344
Q ss_pred HHHHHHHHhcC
Q 014555 252 YMLLCKIMVSQ 262 (422)
Q Consensus 252 y~vL~~lL~~~ 262 (422)
.++.+....+.
T Consensus 239 ~l~~~~~~~g~ 249 (291)
T 3mkr_A 239 NLVVLSQHLGK 249 (291)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHcCC
Confidence 44444444444
No 87
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=96.69 E-value=0.073 Score=46.91 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=103.4
Q ss_pred cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 19 ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 19 ~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
..+.++|++.|...++..+.. ..+...++.++...|+++...+.+.......+.-+. ....+...+..
T Consensus 70 ~~~~~~A~~~~~~~~~~~~~~-------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~a~~~~~ 137 (243)
T 2q7f_A 70 VNELERALAFYDKALELDSSA-------ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD-----LFYMLGTVLVK 137 (243)
T ss_dssp TTCHHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH-----HHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHcCCcc-------hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHH
Confidence 346899999999988765432 246678899999999999999988887765442211 11222222222
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
..+ .+.-++.++..++........ -..++.++...|++++|.+.+...+... +. ..+++...+.++.
T Consensus 138 ~~~-~~~A~~~~~~~~~~~~~~~~~------~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~ 204 (243)
T 2q7f_A 138 LEQ-PKLALPYLQRAVELNENDTEA------RFQFGMCLANEGMLDEALSQFAAVTEQD----PG--HADAFYNAGVTYA 204 (243)
T ss_dssp TSC-HHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHHTCCHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHH
T ss_pred hcc-HHHHHHHHHHHHHhCCccHHH------HHHHHHHHHHcCCHHHHHHHHHHHHHhC----cc--cHHHHHHHHHHHH
Confidence 222 233355666666543222222 3488999999999999999998876431 11 2345666788999
Q ss_pred hhCCHHHHHHHHHHHHHhh
Q 014555 179 SLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~ 197 (422)
..|++.+|...+.++....
T Consensus 205 ~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 205 YKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HTTCTTHHHHHHHHHHHHC
T ss_pred HccCHHHHHHHHHHHHccC
Confidence 9999999999999887653
No 88
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=96.64 E-value=0.091 Score=52.98 Aligned_cols=187 Identities=12% Similarity=0.058 Sum_probs=115.2
Q ss_pred HHHHhhcC-Ch-HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHH
Q 014555 13 IAQAKEAS-NP-SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVR 90 (422)
Q Consensus 13 ~ak~~~~~-~~-~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~ 90 (422)
.+..+... +. ++|++.|...++..+... .++..++.++...|+++...+.+.......+ .. ....
T Consensus 108 lg~~~~~~g~~~~~A~~~~~~al~~~p~~~-------~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p---~~---~~~~ 174 (474)
T 4abn_A 108 KGKALNVTPDYSPEAEVLLSKAVKLEPELV-------EAWNQLGEVYWKKGDVTSAHTCFSGALTHCK---NK---VSLQ 174 (474)
T ss_dssp HHHHHTSSSSCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCC---CH---HHHH
T ss_pred HHHHHHhccccHHHHHHHHHHHHhhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CH---HHHH
Confidence 34444333 57 999999999887655332 3677899999999999999988888776443 21 2233
Q ss_pred HHHHHhhcC-CCCh-------hHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhc--------ccHHHHHHHHHHHH
Q 014555 91 GIIDAVAKI-PGTS-------ELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMES--------REYTEALTLLTSLV 154 (422)
Q Consensus 91 ~~l~~~~~~-~~~~-------~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~--------g~~~~A~~~l~~l~ 154 (422)
.+-..+... .... +.-++.++..++...++...| ..|+.+|... |++++|.+.++..+
T Consensus 175 ~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~------~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al 248 (474)
T 4abn_A 175 NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSW------YILGNAYLSLYFNTGQNPKISQQALSAYAQAE 248 (474)
T ss_dssp HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHH------HHHHHHHHHHHHhhccccchHHHHHHHHHHHH
Confidence 333333222 1111 111334444444322222333 3788888888 99999999998876
Q ss_pred HHHhhhcc-chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHH
Q 014555 155 KEVRRLDD-KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYS 229 (422)
Q Consensus 155 ~e~~~~~~-~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~ 229 (422)
.- ++ .....+.+.....++...|++.+|...+.++...... . ......-|.++...+++.+|..
T Consensus 249 ~~----~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~----~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 249 KV----DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA---W----PEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HH----CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hh----CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHHHHHHHHHHH
Confidence 43 11 1134566666788999999999999999998776321 1 1222334455555556655553
No 89
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=96.51 E-value=0.29 Score=43.25 Aligned_cols=164 Identities=17% Similarity=0.066 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ 127 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~ 127 (422)
.+...++..+.+.|+++.-...+......-+.-+.+.. .+-..+....+ .+.-+..++..++...+. ...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-----~lg~~~~~~g~-~~~A~~~~~~al~~~P~~----~~a 75 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALY-----WLARTQLKLGL-VNPALENGKTLVARTPRY----LGG 75 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHH-----HHHHHHHHTTC-HHHHHHHHHHHHHHCTTC----HHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHcCC-HHHHHHHHHHHHHhCCCc----HHH
Confidence 36678899999999999999888877754433222211 11111111111 233345555555532111 111
Q ss_pred HHHHHHHHHHHhc-----------ccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 128 RVEARLAALLMES-----------REYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 128 ~l~~~La~~~~~~-----------g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
...++.++... |++++|...+...+.- ++. ..+.+.....++...|++.+|...++++..+
T Consensus 76 --~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~----~P~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 147 (217)
T 2pl2_A 76 --YMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV----NPR--YAPLHLQRGLVYALLGERDKAEASLKQALAL 147 (217)
T ss_dssp --HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh----Ccc--cHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 33788888888 9999999998887643 222 2345556678999999999999999999877
Q ss_pred hccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 197 ANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 197 ~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
. . +| .....-|..+...|+|.+|...|-.+...
T Consensus 148 ~---~-~~----~~~~~la~~~~~~g~~~~A~~~~~~al~~ 180 (217)
T 2pl2_A 148 E---D-TP----EIRSALAELYLSMGRLDEALAQYAKALEQ 180 (217)
T ss_dssp C---C-CH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred c---c-ch----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5 2 32 23446788888999999999999888763
No 90
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=96.50 E-value=0.4 Score=43.28 Aligned_cols=103 Identities=9% Similarity=0.083 Sum_probs=76.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..+|..+...|+|++|.+.+..++..- .+.....+.+.....++...|++..|...+.++...... +|. ....
T Consensus 19 ~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---~~~-~~~a 91 (261)
T 3qky_A 19 FERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---DPR-VPQA 91 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTT-HHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---Cch-hHHH
Confidence 377888999999999999999886421 112334667777788999999999999999988765311 222 2233
Q ss_pred HHHHHHHhch--------hhcHHHHHHHHHHHhhhhhc
Q 014555 211 DLQSGILHAE--------EKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 211 ~~~~g~~~~~--------~~dy~~A~~~f~ea~~~~~~ 240 (422)
...-|..+.. .++|..|...|-.+...+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~ 129 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN 129 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC
Confidence 4456777777 99999999999999877653
No 91
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=96.48 E-value=0.073 Score=45.39 Aligned_cols=163 Identities=10% Similarity=-0.003 Sum_probs=99.9
Q ss_pred cchHHHHHhhc-CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHH
Q 014555 9 TTDSIAQAKEA-SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 9 ~~~~~ak~~~~-~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k 87 (422)
..+..|..+.. .++++|+..|...++..+.. ..+...++.++...|++++-...+.......+ -+ ....
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~-------~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~--~~~~ 77 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSR-------GDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN--SYKS 77 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTS-------HHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH--HHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCc-------HHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch--HHHH
Confidence 46667776654 46899999999988754432 34778899999999999999988887765433 11 1111
Q ss_pred HHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHH
Q 014555 88 IVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLV 167 (422)
Q Consensus 88 ~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~ 167 (422)
....+........ ..-++.++..++...++ ... -..++.++...|++++|...+..++.. ++...-.
T Consensus 78 -~~~~~~~~~~~~~--~~a~~~~~~al~~~P~~--~~~----~~~la~~~~~~g~~~~A~~~~~~~l~~----~p~~~~~ 144 (176)
T 2r5s_A 78 -LIAKLELHQQAAE--SPELKRLEQELAANPDN--FEL----ACELAVQYNQVGRDEEALELLWNILKV----NLGAQDG 144 (176)
T ss_dssp -HHHHHHHHHHHTS--CHHHHHHHHHHHHSTTC--HHH----HHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTTTTT
T ss_pred -HHHHHHHHhhccc--chHHHHHHHHHHhCCCC--HHH----HHHHHHHHHHcccHHHHHHHHHHHHHh----CcccChH
Confidence 1111111111111 11244455554432111 111 338899999999999999999887643 2111111
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
..+..-..++...|+...|...|.++.
T Consensus 145 ~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 145 EVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 223333568888999999988887653
No 92
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=96.44 E-value=0.045 Score=45.93 Aligned_cols=100 Identities=9% Similarity=0.033 Sum_probs=76.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc------------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDD------------KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~------------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
..++..++..|+|++|+..+...+.-+....+ ......++...+.+++..|++.+|...++++..+.
T Consensus 15 ~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~- 93 (162)
T 3rkv_A 15 RQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE- 93 (162)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-
Confidence 37788899999999999999988765433210 33456778888899999999999999999887762
Q ss_pred cCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 199 AIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 199 ~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|... .....-|..+...|+|..|...|-.+..-
T Consensus 94 ----p~~~--~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 94 ----ETNE--KALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp ----TTCH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----Ccch--HHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 2122 23445788888999999999999888763
No 93
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=96.35 E-value=0.044 Score=44.52 Aligned_cols=93 Identities=10% Similarity=0.046 Sum_probs=72.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..|+..|+|++|++.+++.+.- ++. ..+++.....++...|++.+|...++++..+.. .. ...
T Consensus 17 ~~~G~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-----~~--~~a 83 (126)
T 4gco_A 17 KNKGNEYFKKGDYPTAMRHYNEAVKR----DPE--NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-----KF--IKG 83 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----TC--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-----hh--hHH
Confidence 36889999999999999999887642 222 345666678899999999999999998877632 11 223
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...-|..+...++|.+|...|-.+.+
T Consensus 84 ~~~lg~~~~~~~~~~~A~~~~~~al~ 109 (126)
T 4gco_A 84 YIRKAACLVAMREWSKAQRAYEDALQ 109 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45578888999999999999998876
No 94
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=96.18 E-value=0.52 Score=41.70 Aligned_cols=186 Identities=9% Similarity=-0.058 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch--
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR-- 122 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r-- 122 (422)
|+..++..++..+++.|+|+...+.+..+....+.-+ ......-.+-..+....+ .+.-++.++.+++.-.+...
T Consensus 2 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~a~~~lg~~~~~~~~-~~~A~~~~~~~l~~~P~~~~~~ 78 (225)
T 2yhc_A 2 NPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGP--YSQQVQLDLIYAYYKNAD-LPLAQAAIDRFIRLNPTHPNID 78 (225)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST--THHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCTTHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHHCcCCCcHH
Confidence 3455788889999999999999999988886543211 111111122222211211 22224444444442211111
Q ss_pred -hHH-hhHHH-----------HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccc-----------hhHHHHHHHHHHHHH
Q 014555 123 -TFL-RQRVE-----------ARLAALLMESREYTEALTLLTSLVKEVRRLDDK-----------LLLVDIDLLESKLHF 178 (422)
Q Consensus 123 -~~l-r~~l~-----------~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~-----------~~~~e~~l~~~~~~~ 178 (422)
.++ +..+- ..++..+.+.|++++|...++.++..-..+... ..+.+..+...+++.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 11100 023444556789999999999887542222110 001122244566788
Q ss_pred hhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 179 SLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 179 ~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
..|++..|...++++.... + +..........-|..+...|++..|...|-.+...
T Consensus 159 ~~~~~~~A~~~~~~~l~~~---p-~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGMLRDY---P-DTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp HHTCHHHHHHHHHHHHHHS---T-TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HcCcHHHHHHHHHHHHHHC---c-CCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 8888888888887765542 1 11222234455677777888888888776655443
No 95
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=96.17 E-value=0.14 Score=42.95 Aligned_cols=96 Identities=17% Similarity=0.058 Sum_probs=74.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|+|++|.+.++..+.. ++. ..+++.....++...|++.+|...+.++..+.. .. ...
T Consensus 15 ~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~-~~~ 81 (164)
T 3sz7_A 15 KSEGNAAMARKEYSKAIDLYTQALSI----APA--NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP------KY-SKA 81 (164)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCc--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CC-HHH
Confidence 37889999999999999999987643 211 245666678899999999999999998877632 21 234
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|.++...++|..|..+|-.+..-..
T Consensus 82 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 82 WSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 45578888899999999999999876554
No 96
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=96.13 E-value=0.085 Score=41.93 Aligned_cols=95 Identities=13% Similarity=0.029 Sum_probs=72.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|+|++|+..+...+.. ++. ..+++.....++...|++.+|...+.++..+.. .. ...
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~-~~~ 74 (126)
T 3upv_A 8 RLEGKEYFTKSDWPNAVKAYTEMIKR----APE--DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP------NF-VRA 74 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHh----CCC--ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC------Cc-HHH
Confidence 37888999999999999999887643 221 246666778899999999999999998877631 11 233
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|..+...++|..|...|-.+....
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 4557888889999999999998887543
No 97
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=96.12 E-value=0.1 Score=46.17 Aligned_cols=96 Identities=16% Similarity=0.123 Sum_probs=75.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh---hH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ---QG 208 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i---~a 208 (422)
.++..+...|++++|.+.+...+.. ++. ..+++.....++...|++.+|...+.++...... ++.+ .+
T Consensus 47 ~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~---~~~~~~~~~ 117 (228)
T 4i17_A 47 NCGVCADNIKKYKEAADYFDIAIKK----NYN--LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG---NATIEKLYA 117 (228)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----TCS--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CHHHHHHHH
T ss_pred HHHHHHHHhhcHHHHHHHHHHHHHh----Ccc--hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC---cHHHHHHHH
Confidence 5889999999999999998887632 222 4566777788999999999999999988776422 2222 33
Q ss_pred HHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 209 TIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 209 ~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
.....-|..+...++|..|...|-.+..
T Consensus 118 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 145 (228)
T 4i17_A 118 IYYLKEGQKFQQAGNIEKAEENYKHATD 145 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence 5566788999999999999999999876
No 98
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=96.04 E-value=0.092 Score=42.02 Aligned_cols=96 Identities=14% Similarity=0.089 Sum_probs=73.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|+|++|...+...+.. ++. ..+++.....++...|++.+|...+.++..... . ....
T Consensus 13 ~~~g~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~-~~~~ 79 (137)
T 3q49_B 13 KEQGNRLFVGRKYPEAAACYGRAITR----NPL--VAVYYTNRALCYLKMQQPEQALADCRRALELDG------Q-SVKA 79 (137)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T-CHHH
T ss_pred HHHHHHHHHhCcHHHHHHHHHHHHhh----CcC--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------h-hHHH
Confidence 37889999999999999999887653 111 245666678899999999999999998877531 1 1234
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...++|..|...|-.+.....
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 45578888899999999999988876443
No 99
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=96.01 E-value=0.047 Score=52.33 Aligned_cols=98 Identities=13% Similarity=0.134 Sum_probs=76.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc-----hh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP-----AQ 206 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~-----~i 206 (422)
-+|.++...|++++|++++...+. .++....++.++..+++++..|+.+.|+..+...... +| .-
T Consensus 105 ~la~i~~~~g~~eeAL~~l~~~i~----~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~------~~d~~~~~d 174 (310)
T 3mv2_B 105 LLATAQAILGDLDKSLETCVEGID----NDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA------IEDTVSGDN 174 (310)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHT----SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------SCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhc----cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------Cccccccch
Confidence 789999999999999999887531 1222468899999999999999999999999877665 33 23
Q ss_pred hHHHHHHHHHHhchhh--cHHHHHHHHHHHhhhhh
Q 014555 207 QGTIDLQSGILHAEEK--DYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~--dy~~A~~~f~ea~~~~~ 239 (422)
...+....|.+.+..| +|.+|+..|-|....|.
T Consensus 175 ~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 175 EMILNLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 3446677787777666 99999988888877664
No 100
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=95.96 E-value=0.16 Score=38.81 Aligned_cols=94 Identities=11% Similarity=-0.043 Sum_probs=70.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+...+.. ++. ..+++.....++...|++.+|...+.++..... . ....
T Consensus 8 ~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~-~~~~ 74 (118)
T 1elw_A 8 KEKGNKALSVGNIDDALQCYSEAIKL----DPH--NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------D-WGKG 74 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------T-CHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHH----CCC--cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------c-cHHH
Confidence 47888999999999999999887643 111 244566667889999999999999988876521 1 1233
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...-|..+...++|..|...|-.+...
T Consensus 75 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 75 YSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 455677788899999999998888753
No 101
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.94 E-value=0.12 Score=41.54 Aligned_cols=98 Identities=11% Similarity=-0.013 Sum_probs=73.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+...+... .+......++.....++...+++.+|...+.++.... |.. ...
T Consensus 32 ~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~ 101 (148)
T 2dba_A 32 RKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-----GGD--VKA 101 (148)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-----SCC--HHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-----ccC--HHH
Confidence 478889999999999999998876321 1122346677777889999999999999999887652 111 233
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|..+...++|..|...|-.+....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 4557888889999999999998887643
No 102
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=95.93 E-value=0.077 Score=41.79 Aligned_cols=95 Identities=13% Similarity=0.043 Sum_probs=72.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+...+.. ++. ..+++.....++...|++.+|...+.++..... . ....
T Consensus 20 ~~~~~~~~~~~~~~~A~~~~~~al~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~-~~~~ 86 (133)
T 2lni_A 20 KNKGNECFQKGDYPQAMKHYTEAIKR----NPK--DAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------T-FIKG 86 (133)
T ss_dssp HHHHHHHHHTTCSHHHHHHHHHHHTT----CTT--CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT------T-CHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------C-chHH
Confidence 37888999999999999998887632 221 245666678899999999999999998876521 1 1234
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|.++...++|..|..+|-.+....
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 4557788889999999999998887643
No 103
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=95.78 E-value=0.16 Score=39.56 Aligned_cols=94 Identities=13% Similarity=0.029 Sum_probs=71.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+...+... +. ...++.....++...|++.+|...+.++.... |.. ...
T Consensus 16 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~ 82 (131)
T 2vyi_A 16 KTEGNEQMKVENFEAAVHFYGKAIELN----PA--NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-----PAY--SKA 82 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHcC----CC--CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-----ccC--HHH
Confidence 378889999999999999998876531 11 24456666888999999999999998887652 111 234
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...-|.++...++|..|...|-.+...
T Consensus 83 ~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 83 YGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 456788888999999999999888764
No 104
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.78 E-value=0.092 Score=43.79 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=64.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.||.+|.+.|+|++|.+.+++.+.- ++. ..+.+.....++...|++.+|...+.++..+.. .- ....
T Consensus 36 ~la~~y~~~~~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~-~~~~ 102 (150)
T 4ga2_A 36 YFAKLYYEAKEYDLAKKYICTYINV----QER--DPKAHRFLGLLYELEENTDKAVECYRRSVELNP------TQ-KDLV 102 (150)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC------CC-HHHH
Confidence 7899999999999999988887642 222 245556667788999999999999988877632 11 1123
Q ss_pred HHHHHHhchhhcHHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFFE 233 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~e 233 (422)
..-|.++...++|.+|...|++
T Consensus 103 ~~la~~~~~~~~~~~aa~~~~~ 124 (150)
T 4ga2_A 103 LKIAELLCKNDVTDGRAKYWVE 124 (150)
T ss_dssp HHHHHHHHHHCSSSSHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHH
Confidence 3456777788888888887765
No 105
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.76 E-value=0.49 Score=36.53 Aligned_cols=130 Identities=8% Similarity=0.009 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~ 128 (422)
++..++..+...|+++...+.+.......+.-+. ....+...+....+ .+.-.+.++..+.........
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~~~a~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~----- 71 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE-----AWYNLGNAYYKQGD-YDEAIEYYQKALELDPRSAEA----- 71 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH-----HHHHHHHHHHHHTC-HHHHHHHHHHHHHHCTTCHHH-----
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh-----HHHHHHHHHHHhcC-HHHHHHHHHHHHHHCCCchHH-----
Confidence 5667889999999999988888777654332111 11122222211111 222345555555432121112
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-..++.++...|++++|.+.+....... +. ..+++...++++...|++.+|...+..+...
T Consensus 72 -~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 72 -WYNLGNAYYKQGDYDEAIEYYQKALELD----PR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp -HHHHHHHHHTTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhcCHHHHHHHHHHHHHhC----CC--ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 3378999999999999999988876431 11 1344555678899999999999998877654
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=95.75 E-value=0.28 Score=45.58 Aligned_cols=162 Identities=15% Similarity=0.033 Sum_probs=100.8
Q ss_pred chHHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHH
Q 014555 10 TDSIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKI 88 (422)
Q Consensus 10 ~~~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~ 88 (422)
.+..|..+. ..++++|++.|...+...+... .+...++.++...|++++-.+.+..+....+ ......
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~-------~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p----~~~~~~ 188 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNG-------EIGLLLAETLIALNRSEDAEAVLXTIPLQDQ----DTRYQG 188 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCH-------HHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC----SHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcch-------hHHHHHHHHHHHCCCHHHHHHHHHhCchhhc----chHHHH
Confidence 344555544 4468999999999988765432 3778899999999999999988887765433 222233
Q ss_pred HHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 89 VRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 89 v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
....+.....-.. ..-++.+...++..-.+ . .. ...||.++...|++++|.+.+..++..-.... -.+
T Consensus 189 ~~~~~~l~~~~~~--~~a~~~l~~al~~~P~~--~--~~--~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~----~~~ 256 (287)
T 3qou_A 189 LVAQIELLXQAAD--TPEIQQLQQQVAENPED--A--AL--ATQLALQLHQVGRNEEALELLFGHLRXDLTAA----DGQ 256 (287)
T ss_dssp HHHHHHHHHHHTS--CHHHHHHHHHHHHCTTC--H--HH--HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG----GGH
T ss_pred HHHHHHHHhhccc--CccHHHHHHHHhcCCcc--H--HH--HHHHHHHHHHcccHHHHHHHHHHHHhcccccc----cch
Confidence 3333333332111 11234444444321111 1 12 34899999999999999999999876422211 122
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 169 IDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 169 ~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
....-..++...|+...|...|.++.
T Consensus 257 a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 257 TRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 23333557778898888877777653
No 107
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=95.74 E-value=0.27 Score=40.25 Aligned_cols=134 Identities=10% Similarity=0.020 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
.....+..++..++..|+++.....+...... .|+. ...
T Consensus 11 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----------------------~~~~------------------~~~- 49 (166)
T 1a17_A 11 KRAEELKTQANDYFKAKDYENAIKFYSQAIEL----------------------NPSN------------------AIY- 49 (166)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------STTC------------------HHH-
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------------------CCCC------------------hHH-
Confidence 44556777888888888887777665544431 1221 011
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
-..++.++...|++++|.+.+...+.. ++. ....+.....++...|++.+|...+.++...... ++
T Consensus 50 -----~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~---~~ 115 (166)
T 1a17_A 50 -----YGNRSLAYLRTECYGYALGDATRAIEL----DKK--YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DK 115 (166)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHHHHHHh----Ccc--cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC---CH
Confidence 226777888889999998888877643 111 2345556677888899999999888887665321 22
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
. +......+..+...++|..|...|-.+-
T Consensus 116 ~--~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 116 D--AKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 2 2222334444556777777776665543
No 108
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=95.72 E-value=0.29 Score=39.94 Aligned_cols=96 Identities=16% Similarity=0.057 Sum_probs=72.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+..++.. ++. -.+++.....++...|++..|...+.++...... +|. .
T Consensus 22 ~~~a~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~---~~~----~ 88 (142)
T 2xcb_A 22 YALGFNQYQAGKWDDAQKIFQALCML----DHY--DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN---EPR----F 88 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTH----H
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---CcH----H
Confidence 37888999999999999999887642 222 2344555677899999999999999988776422 222 2
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...|+|..|...|-.+.....
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 34578888899999999999988876443
No 109
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=95.68 E-value=0.81 Score=40.80 Aligned_cols=52 Identities=10% Similarity=-0.052 Sum_probs=39.6
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
.+.++|++.|...++..+... .+...++.++...|+++.-.+.+.......+
T Consensus 57 ~~~~~A~~~~~~al~~~~~~~-------~~~~~la~~~~~~~~~~~A~~~~~~al~~~~ 108 (275)
T 1xnf_A 57 GLRALARNDFSQALAIRPDMP-------EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP 108 (275)
T ss_dssp TCHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccHHHHHHHHHHHHHcCCCcH-------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCc
Confidence 368899999998887654332 3567788999999999998888887776443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=95.67 E-value=0.34 Score=49.56 Aligned_cols=152 Identities=15% Similarity=0.031 Sum_probs=79.2
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.+.++|++.|...++...... .++..++..+...|++++..+.+.......
T Consensus 3 g~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------- 53 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDF-------VAWLMLADAELGMGDTTAGEMAVQRGLALH---------------------- 53 (568)
T ss_dssp ------------------CCH-------HHHHHHHHHHHHHTCHHHHHHHHHHHHTTS----------------------
T ss_pred ccHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------
Confidence 357889999998887655332 367788999999999988877766555421
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
|+.. .. -..++.+|...|++++|.+.+++.+.. ++. ..+.+.....++..
T Consensus 54 p~~~------------------~~------~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~ 103 (568)
T 2vsy_A 54 PGHP------------------EA------VARLGRVRWTQQRHAEAAVLLQQASDA----APE--HPGIALWLGHALED 103 (568)
T ss_dssp TTCH------------------HH------HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHH
T ss_pred CCCH------------------HH------HHHHHHHHHHCCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHH
Confidence 2210 01 125666777777777777777666532 111 13344445667777
Q ss_pred hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh---hcHHHHHHHHHHHhhh
Q 014555 180 LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE---KDYKTAYSYFFEAFEA 237 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~---~dy~~A~~~f~ea~~~ 237 (422)
.|++.+|...+.++...... + ......-|..+... +++.+|...|-++...
T Consensus 104 ~g~~~~A~~~~~~al~~~p~---~----~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 104 AGQAEAAAAAYTRAHQLLPE---E----PYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC---C----HHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 77777777777776555211 1 12223345555556 7777777777666543
No 111
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=95.65 E-value=0.35 Score=51.72 Aligned_cols=164 Identities=12% Similarity=0.100 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
-.++..++.++.+.|++++-.+.+.......+..+.+.. .+=..+..... .+.-++.+++.++.-.+. ..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~-----nLg~~l~~~g~-~~eA~~~~~~Al~l~P~~----~~ 78 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHS-----NLASVLQQQGK-LQEALMHYKEAIRISPTF----AD 78 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-----HHHHHHHHTTC-HHHHHHHHHHHHHHCTTC----HH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHcCC-HHHHHHHHHHHHHhCCCC----HH
Confidence 458899999999999999999998887765544322221 11111211211 233355555555532111 11
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ 206 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i 206 (422)
+ -..|+.+|.+.|++++|.+.+++.+.- ++. ..+.+.....++...|++.+|...|++|..+.. ..
T Consensus 79 a--~~nLg~~l~~~g~~~~A~~~~~kAl~l----~P~--~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P------~~ 144 (723)
T 4gyw_A 79 A--YSNMGNTLKEMQDVQGALQCYTRAIQI----NPA--FADAHSNLASIHKDSGNIPEAIASYRTALKLKP------DF 144 (723)
T ss_dssp H--HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CC
T ss_pred H--HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC
Confidence 2 338899999999999999998887642 222 345566668899999999999999999887632 11
Q ss_pred hHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 207 QGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 207 ~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
......-|..+...++|.+|...|-.+.
T Consensus 145 -~~a~~~L~~~l~~~g~~~~A~~~~~kal 172 (723)
T 4gyw_A 145 -PDAYCNLAHCLQIVCDWTDYDERMKKLV 172 (723)
T ss_dssp -HHHHHHHHHHHHHTTCCTTHHHHHHHHH
T ss_pred -hHHHhhhhhHHHhcccHHHHHHHHHHHH
Confidence 1223345666677788888877776554
No 112
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=95.55 E-value=1.3 Score=44.44 Aligned_cols=95 Identities=15% Similarity=0.038 Sum_probs=73.7
Q ss_pred HHHHHHHHHhcccH-HHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 130 EARLAALLMESREY-TEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 130 ~~~La~~~~~~g~~-~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
-..++..+...|+| ++|.+.+++.+.. ++. ..+.+.....+|...|++.+|...+.++... +|. .
T Consensus 105 ~~~lg~~~~~~g~~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~--~ 170 (474)
T 4abn_A 105 LMLKGKALNVTPDYSPEAEVLLSKAVKL----EPE--LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH------CKN--K 170 (474)
T ss_dssp HHHHHHHHTSSSSCCHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT------CCC--H
T ss_pred HHHHHHHHHhccccHHHHHHHHHHHHhh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCC--H
Confidence 34888999999999 9999999887643 221 3456666788999999999999999988665 234 3
Q ss_pred HHHHHHHHHhchh---------hcHHHHHHHHHHHhhhh
Q 014555 209 TIDLQSGILHAEE---------KDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 209 ~i~~~~g~~~~~~---------~dy~~A~~~f~ea~~~~ 238 (422)
.....-|.++... ++|.+|...|-++....
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 209 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD 209 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC
Confidence 4555667777778 99999999999987643
No 113
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=95.47 E-value=0.15 Score=44.12 Aligned_cols=100 Identities=11% Similarity=0.029 Sum_probs=75.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLD----------DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~----------~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
..++..+...|+|++|.+.+...+.-..... .......++.....++...|++.+|...+.++....
T Consensus 42 ~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 118 (198)
T 2fbn_A 42 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID--- 118 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---
Confidence 4788899999999999999998875322211 112235777788889999999999999999887762
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|.. ......-|..+...++|..|..+|-.+...
T Consensus 119 --p~~--~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 119 --KNN--VKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp --TTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred --ccc--HHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 211 233455788888999999999999888764
No 114
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=95.44 E-value=0.3 Score=40.51 Aligned_cols=95 Identities=16% Similarity=0.041 Sum_probs=71.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+..++.. ++. -.+.+.....++...|++.+|...+.++..+... +| ..
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~---~~----~~ 91 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVL----DHY--DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX---EP----RF 91 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT---CT----HH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc----Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC---Cc----hH
Confidence 37889999999999999999887643 222 2334445577899999999999999988776322 22 22
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|..+...|+|..|...|-.+..-.
T Consensus 92 ~~~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 92 PFHAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3456888899999999999998887644
No 115
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=95.44 E-value=0.13 Score=38.90 Aligned_cols=97 Identities=12% Similarity=0.014 Sum_probs=72.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.++..+...|++++|...+...+.. ++. ..+.+.....++...|++.+|...+.++...... .......
T Consensus 11 ~~~~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~ 79 (112)
T 2kck_A 11 LEGVLQYDAGNYTESIDLFEKAIQL----DPE--ESKYWLMKGKALYNLERYEEAVDCYNYVINVIED-----EYNKDVW 79 (112)
T ss_dssp GHHHHHHSSCCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC-----TTCHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh----CcC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-----cchHHHH
Confidence 6788899999999999999887643 111 2345566678899999999999999988765321 1123345
Q ss_pred HHHHHHhchh-hcHHHHHHHHHHHhhhhh
Q 014555 212 LQSGILHAEE-KDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 212 ~~~g~~~~~~-~dy~~A~~~f~ea~~~~~ 239 (422)
..-|..+... ++|..|..+|-.+.....
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 5678888899 999999999988876543
No 116
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=95.39 E-value=0.38 Score=37.24 Aligned_cols=92 Identities=15% Similarity=0.158 Sum_probs=58.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.++.++...|++++|...+...... .+. ....+...+.++...|++.+|...+..+...... + ....
T Consensus 40 ~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~----~~~~ 106 (136)
T 2fo7_A 40 NLGNAYYKQGDYDEAIEYYQKALEL----DPR--SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR---S----AEAW 106 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---C----HHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH----CCC--chHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC---C----hHHH
Confidence 5677788888888888877776532 111 1233444566778888888888888776654211 1 1222
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-|.++...++|..|...|-++..
T Consensus 107 ~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 107 YNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccHHHHHHHHHHHHc
Confidence 3356666777888888877777654
No 117
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=95.33 E-value=0.081 Score=44.16 Aligned_cols=92 Identities=11% Similarity=0.046 Sum_probs=64.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.|+.++...|++++|++.++.... .+ ...-..++...++|+..|++.+|...+.++..+... + ....
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~----~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~---~----~~a~ 68 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTP----SP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER---D----PKAH 68 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSC----SH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C----HHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhcc----cC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---C----HHHH
Confidence 477888889999999887776532 11 122233445588999999999999999998776321 1 2334
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
..-|.++...++|..|...|-.+.+
T Consensus 69 ~~lg~~~~~~~~~~~A~~~~~~al~ 93 (150)
T 4ga2_A 69 RFLGLLYELEENTDKAVECYRRSVE 93 (150)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHH
Confidence 5578888899999999999988876
No 118
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=95.31 E-value=0.19 Score=42.42 Aligned_cols=95 Identities=15% Similarity=-0.036 Sum_probs=72.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|+|++|...+..++.- ++. ..+++.....++...|++.+|...|.++..+... +| ..
T Consensus 40 ~~lg~~~~~~g~~~eA~~~~~~al~~----~P~--~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~---~~----~~ 106 (151)
T 3gyz_A 40 YSYAYDFYNKGRIEEAEVFFRFLCIY----DFY--NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN---DY----TP 106 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS---CC----HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC---Cc----HH
Confidence 37888999999999999999987643 222 2344555577899999999999999999877432 22 22
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
...-|..+...|+|..|...|-.+..-.
T Consensus 107 ~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 107 VFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3457888889999999999999887643
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=95.28 E-value=0.25 Score=42.73 Aligned_cols=101 Identities=14% Similarity=0.077 Sum_probs=74.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC----------
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY---------- 201 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~---------- 201 (422)
.++.+|...|++++|.+.+...+.. ++. ..+.+.....++...|++.+|...+.++........
T Consensus 42 ~lg~~~~~~g~~~~A~~~~~~al~~----~~~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 115 (213)
T 1hh8_A 42 NIGCMYTILKNMTEAEKAFTRSINR----DKH--LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQ 115 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----Ccc--chHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccc
Confidence 7788899999999999999887643 221 245566678899999999999999998877543211
Q ss_pred CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 202 VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 202 ~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
..|. .......-|..+...++|..|..+|-.+.....
T Consensus 116 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 116 FKLF-ACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp CEEE-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cCcc-chHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 1111 234456678888899999999999998876544
No 120
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=95.22 E-value=0.92 Score=47.88 Aligned_cols=155 Identities=14% Similarity=0.007 Sum_probs=97.5
Q ss_pred HHhhcCChHHHHHHHHhhc--------CCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHH
Q 014555 15 QAKEASNPSDAISMLYRVL--------DDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTA 86 (422)
Q Consensus 15 k~~~~~~~~~Ai~~l~~i~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~ 86 (422)
.++...++++|++.|...+ +..... ..++..++..+.+.|++++..+.+.......+.-+.+..
T Consensus 400 ~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~- 471 (681)
T 2pzi_A 400 QATVLSQPVQTLDSLRAARHGALDADGVDFSES-------VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVW- 471 (681)
T ss_dssp HHTTTCCHHHHHHHHHHHHTC-------CCTTC-------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHH-
T ss_pred hcccccCHHHHHHHHHHhhhhcccccccccccc-------hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHH-
Confidence 3356667899999999988 433322 236778899999999999999888887765443222221
Q ss_pred HHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhH
Q 014555 87 KIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLL 166 (422)
Q Consensus 87 k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~ 166 (422)
..-.-++. . +..+.-++.++..++..-++-.. -..|+.++...|++++ .+.++..+.- ++. .
T Consensus 472 ---~lg~~~~~-~-g~~~~A~~~~~~al~l~P~~~~~------~~~lg~~~~~~g~~~~-~~~~~~al~~----~P~--~ 533 (681)
T 2pzi_A 472 ---YRAVAELL-T-GDYDSATKHFTEVLDTFPGELAP------KLALAATAELAGNTDE-HKFYQTVWST----NDG--V 533 (681)
T ss_dssp ---HHHHHHHH-H-TCHHHHHHHHHHHHHHSTTCSHH------HHHHHHHHHHHTCCCT-TCHHHHHHHH----CTT--C
T ss_pred ---HHHHHHHH-c-CCHHHHHHHHHHHHHhCCCChHH------HHHHHHHHHHcCChHH-HHHHHHHHHh----CCc--h
Confidence 11111111 1 11222344555555432222222 2378899999999999 8888877642 222 2
Q ss_pred HHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Q 014555 167 VDIDLLESKLHFSLRNLPKAKAALTAART 195 (422)
Q Consensus 167 ~e~~l~~~~~~~~~~n~~kak~~l~~a~~ 195 (422)
.+.+.....++...|++.+|...|+++..
T Consensus 534 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 562 (681)
T 2pzi_A 534 ISAAFGLARARSAEGDRVGAVRTLDEVPP 562 (681)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcc
Confidence 34556668899999999999888876644
No 121
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=95.14 E-value=0.2 Score=48.91 Aligned_cols=100 Identities=13% Similarity=0.101 Sum_probs=76.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhh----------ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRL----------DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~----------~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
..++..+...|+|++|++.+++.+...... ........++...+.+++..+++.+|...++++....
T Consensus 227 ~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--- 303 (370)
T 1ihg_A 227 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID--- 303 (370)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC---
Confidence 478999999999999999999887643321 0223456778888899999999999999998887642
Q ss_pred CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 201 YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 201 ~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|.. ......-|..+...++|.+|..+|-.+..-
T Consensus 304 ---p~~-~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 304 ---PSN-TKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp ---TTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---chh-HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 221 233445778888999999999999988764
No 122
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=95.06 E-value=0.98 Score=36.15 Aligned_cols=117 Identities=12% Similarity=0.102 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
..-.+.+.++..+++.|+|+.-.+.+...... -|+.. ..|
T Consensus 6 d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~----------------------~p~~~------------------~~~ 45 (127)
T 4gcn_A 6 DAAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL----------------------DPSNI------------------TFY 45 (127)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTCH------------------HHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCH------------------HHH
Confidence 34456778999999999999988777543321 23321 111
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCC
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD-DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVP 203 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~ 203 (422)
..++.+|...|+|++|++.+...+.--.... +.......+.....++...|++.+|...+.++.... + +
T Consensus 46 ------~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~---~-~ 115 (127)
T 4gcn_A 46 ------NNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF---R-D 115 (127)
T ss_dssp ------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---C-C
T ss_pred ------HhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---c-C
Confidence 2678889999999999998888765433221 223455677777888999999999999999886542 2 4
Q ss_pred chhhHHHH
Q 014555 204 PAQQGTID 211 (422)
Q Consensus 204 ~~i~a~i~ 211 (422)
|.+...+.
T Consensus 116 ~~~~~~l~ 123 (127)
T 4gcn_A 116 PELVKKVK 123 (127)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 123
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=95.03 E-value=0.3 Score=39.02 Aligned_cols=93 Identities=11% Similarity=0.009 Sum_probs=70.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|...+...+.. ++. ..+.+.....++...|++.+|...+.++..+.. .- ...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~----~P~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~-~~~ 87 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK----EPE--REEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KD-IAV 87 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CC-HHH
Confidence 37788899999999999999887643 222 244555567789999999999999998877632 11 123
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...-|..+...|+|.+|...|-.+..
T Consensus 88 ~~~la~~~~~~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 88 HAALAVSHTNEHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34577788899999999998888765
No 124
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=95.01 E-value=0.48 Score=48.25 Aligned_cols=108 Identities=9% Similarity=0.053 Sum_probs=80.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC--CCchhh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY--VPPAQQ 207 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~--~~~~i~ 207 (422)
..+.-+...|+|++|..++.+.+.-..+.- +-...+..+-..+.+|..+|++.+|..++.++..+...++ .||.+-
T Consensus 314 e~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a 393 (490)
T 3n71_A 314 EKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLG 393 (490)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 445556789999999999998876655442 2234566666778899999999999999999987766543 366665
Q ss_pred HHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 208 GTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 208 a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
..+.-. |.+|...|+|.+|..+|-.|+..+..
T Consensus 394 ~~l~nL-a~~~~~~G~~~eA~~~~~~Al~i~~~ 425 (490)
T 3n71_A 394 MAVMRA-GLTNWHAGHIEVGHGMICKAYAILLV 425 (490)
T ss_dssp HHHHHH-HHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 555544 55566899999999999988766643
No 125
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=94.97 E-value=0.42 Score=36.56 Aligned_cols=94 Identities=15% Similarity=0.132 Sum_probs=69.4
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+...+..- +. ..+++...+.++...|++.+|...+.++.... |.. ...
T Consensus 13 ~~~~~~~~~~~~~~~A~~~~~~~~~~~----~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-----~~~--~~~ 79 (125)
T 1na0_A 13 YNLGNAYYKQGDYDEAIEYYQKALELD----PN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-----PNN--AEA 79 (125)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC----TT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----TTC--HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHC----cC--cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-----Ccc--HHH
Confidence 378888999999999999998886531 11 23455566788999999999999998886652 111 123
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...-|.++...++|..|...|-++...
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 345677788899999999998888753
No 126
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=94.93 E-value=0.56 Score=40.44 Aligned_cols=133 Identities=11% Similarity=0.037 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~ 128 (422)
.+..++..++..|+++...+.+....+ . .. .....+-..+....+ .+.-++.++..++...... ..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~---~--~~---~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~----~~- 73 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQD---P--HS---RICFNIGCMYTILKN-MTEAEKAFTRSINRDKHLA----VA- 73 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSS---C--CH---HHHHHHHHHHHHTTC-HHHHHHHHHHHHHHCTTCH----HH-
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcC---C--Ch---HHHHHHHHHHHHcCC-HHHHHHHHHHHHHhCccch----HH-
Confidence 456788999999999999888876642 1 11 122222222222222 2333555666555421111 12
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc----------cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLD----------DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~----------~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-..++.+|...|++++|.+.++..+....... ......+++.....++...|++.+|...+.++...
T Consensus 74 -~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 74 -YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 34889999999999999999988875433211 12234567777888999999999999999988665
No 127
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=94.88 E-value=2.4 Score=39.27 Aligned_cols=191 Identities=13% Similarity=0.136 Sum_probs=112.7
Q ss_pred HHHHHHHHhhcCC-CCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCC
Q 014555 23 SDAISMLYRVLDD-PSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPG 101 (422)
Q Consensus 23 ~~Ai~~l~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~ 101 (422)
++|++.|...++. .+... .+...++.++...|+++...+.+.......+.-+. .+-.....+.....+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~-------~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~ 149 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNM-------LLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT----LVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTH----HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhCcccH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCcc----HHHHHHHHHHHHhcC
Confidence 8899999998883 44322 24556778888999999999888887763322111 011122222211111
Q ss_pred ChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHH-hcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh
Q 014555 102 TSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLM-ESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL 180 (422)
Q Consensus 102 ~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~-~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~ 180 (422)
.+.-.++++..++........|+ ..+.+.. ..|++++|.++++..+..... ..+++..-+.++...
T Consensus 150 -~~~A~~~~~~a~~~~p~~~~~~~------~~a~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 150 -IKSGRMIFKKAREDARTRHHVYV------TAALMEYYCSKDKSVAFKIFELGLKKYGD------IPEYVLAYIDYLSHL 216 (308)
T ss_dssp -HHHHHHHHHHHHTSTTCCTHHHH------HHHHHHHHTSCCHHHHHHHHHHHHHHHTT------CHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhcCCCCHHHHH------HHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHC
Confidence 11123344444332111122333 3333322 269999999999887754321 234555556788889
Q ss_pred CCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 181 RNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 181 ~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
|++.+|+.+++++.... ..+|.-...+...-+.+....|++..|...+-.+...+..
T Consensus 217 g~~~~A~~~~~~al~~~---~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~ 273 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSG---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 273 (308)
T ss_dssp CCHHHHHHHHHHHHHSS---SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999999999886631 0133333344444555666778999999888888766553
No 128
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=94.87 E-value=2.1 Score=38.49 Aligned_cols=184 Identities=14% Similarity=0.111 Sum_probs=109.7
Q ss_pred HHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHhchhhcccchhHHHH
Q 014555 13 IAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQ----ENRAQDLCNLLTQLRPFFSLIPKAKTAK 87 (422)
Q Consensus 13 ~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~l~~~~~~~~k~~~~k 87 (422)
.+..+. ..++++|++.|...++... . .+...++.++.. .++++.-.+.+......- -+.
T Consensus 12 lg~~~~~~~~~~~A~~~~~~a~~~~~--~-------~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~----- 75 (273)
T 1ouv_A 12 LGAKSYKEKDFTQAKKYFEKACDLKE--N-------SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN----- 75 (273)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTC--H-------HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH-----
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--H-------HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH-----
Confidence 344443 3478999999998887221 1 367788899999 999988888777665431 111
Q ss_pred HHHHHHHHhhc---CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhh
Q 014555 88 IVRGIIDAVAK---IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLME----SREYTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 88 ~v~~~l~~~~~---~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~----~g~~~~A~~~l~~l~~e~~~~ 160 (422)
....+-..+.. .....+.-++.++..++. +... ....|+.+|.. .|++++|.+.+......
T Consensus 76 a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~----a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~---- 143 (273)
T 1ouv_A 76 GCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAE----GCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---- 143 (273)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHH----HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCcc----HHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc----
Confidence 11122222222 122223335555555542 2111 13478888888 88898888888877642
Q ss_pred ccchhHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch----hhcHHHHHHHHH
Q 014555 161 DDKLLLVDIDLLESKLHFS----LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE----EKDYKTAYSYFF 232 (422)
Q Consensus 161 ~~~~~~~e~~l~~~~~~~~----~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~----~~dy~~A~~~f~ 232 (422)
++ .+.+.....++.. .+|+.+|...+.++.... ++. ....-|.++.. .++|..|..+|-
T Consensus 144 ~~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~-----~~~----a~~~lg~~~~~g~~~~~~~~~A~~~~~ 210 (273)
T 1ouv_A 144 ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK-----DSP----GCFNAGNMYHHGEGATKNFKEALARYS 210 (273)
T ss_dssp TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHH----HHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred Cc----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC-----CHH----HHHHHHHHHHcCCCCCccHHHHHHHHH
Confidence 11 2233334556666 888888888888776542 211 12234566666 888888888887
Q ss_pred HHhhh
Q 014555 233 EAFEA 237 (422)
Q Consensus 233 ea~~~ 237 (422)
.+.+.
T Consensus 211 ~a~~~ 215 (273)
T 1ouv_A 211 KACEL 215 (273)
T ss_dssp HHHHT
T ss_pred HHHhC
Confidence 66543
No 129
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.86 E-value=1.4 Score=38.36 Aligned_cols=112 Identities=11% Similarity=0.078 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~ 128 (422)
.+...+..+++.|+++.-.+.+.......+ .....-.. .. ...... +..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~~------~~-~~~~~~--------------------~~~~ 55 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNI---DRTEMYYW------TN-VDKNSE--------------------ISSK 55 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCH---HHHHHHHH------HH-SCTTSH--------------------HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHH------hh-hcchhh--------------------hhHH
Confidence 445667788889999998888777665332 11110000 00 011000 0011
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
+...++.+|...|++++|...+...+.. ++. ..+.+.....++...|++.+|...++++..+
T Consensus 56 ~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 56 LATELALAYKKNRNYDKAYLFYKELLQK----APN--NVDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 1235666666777777776666665432 111 2334444456666667777776666666554
No 130
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=94.82 E-value=0.39 Score=40.38 Aligned_cols=96 Identities=9% Similarity=0.084 Sum_probs=70.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH-HHhhCCH--HHHHHHHHHHHHhhccCCCCchhh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL-HFSLRNL--PKAKAALTAARTAANAIYVPPAQQ 207 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~-~~~~~n~--~kak~~l~~a~~~~~~i~~~~~i~ 207 (422)
..++.+|...|++++|...+...+..-. . ..+++.....+ +...|++ .+|...+.++..... .-
T Consensus 48 ~~lg~~~~~~~~~~~A~~~~~~al~~~p----~--~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p------~~- 114 (177)
T 2e2e_A 48 ALLGEYYLWQNDYSNSLLAYRQALQLRG----E--NAELYAALATVLYYQASQHMTAQTRAMIDKALALDS------NE- 114 (177)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHC----S--CHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCT------TC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCC----C--CHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCC------Cc-
Confidence 3789999999999999999988765322 1 13344455666 7788998 999999988876521 11
Q ss_pred HHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 208 GTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 208 a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
......-|.++...++|..|...|-.+.....
T Consensus 115 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 146 (177)
T 2e2e_A 115 ITALMLLASDAFMQANYAQAIELWQKVMDLNS 146 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhhCC
Confidence 12344577888899999999999999876544
No 131
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=94.81 E-value=1.3 Score=35.92 Aligned_cols=65 Identities=18% Similarity=0.144 Sum_probs=46.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
.++.++...|++++|...+...+.. ++....+...+.....+...|++.+|...+..+..+....
T Consensus 86 ~~a~~~~~~~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 150 (166)
T 1a17_A 86 RRAASNMALGKFRAALRDYETVVKV----KPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRSVVDSL 150 (166)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHhccc
Confidence 7888899999999999999887643 2222223333445556778899999999888876665443
No 132
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=94.69 E-value=1.5 Score=38.12 Aligned_cols=94 Identities=11% Similarity=0.004 Sum_probs=68.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHH----------------HHHHHHhhCCHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLL----------------ESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~----------------~~~~~~~~~n~~kak~~l~~a~ 194 (422)
...+..+...|++++|...+...+..-.. ..+.+.. ...++...|++.+|...++++.
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNID------RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHH------HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCC------ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 36777888999999999999887653111 1222333 6788999999999999999887
Q ss_pred HhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 195 TAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 195 ~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
... | .- ......-|.++...|+|..|...|-.+...
T Consensus 82 ~~~-----p-~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (208)
T 3urz_A 82 QKA-----P-NN-VDCLEACAEMQVCRGQEKDALRMYEKILQL 117 (208)
T ss_dssp HHC-----T-TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHC-----C-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 763 1 11 123344688888999999999999988763
No 133
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=94.55 E-value=1.8 Score=42.24 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhh---ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch-h
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRL---DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA-Q 206 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~---~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~-i 206 (422)
-.||.++...|++++|++.+++-+.-.... ......+..+.-...+|...|++.+|..+++++..+......+.. -
T Consensus 55 n~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~ 134 (472)
T 4g1t_A 55 NLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIE 134 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchh
Confidence 378999999999999999998765433222 111223444555677899999999999999999877554431111 1
Q ss_pred hHHHHHHHHH--HhchhhcHHHHHHHHHHHhh
Q 014555 207 QGTIDLQSGI--LHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 207 ~a~i~~~~g~--~~~~~~dy~~A~~~f~ea~~ 236 (422)
.+.+....|. +.+..++|..|..+|-.+.+
T Consensus 135 ~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~ 166 (472)
T 4g1t_A 135 SPELDCEEGWTRLKCGGNQNERAKVCFEKALE 166 (472)
T ss_dssp CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHccccHHHHHHHHHHHHH
Confidence 2333433443 34456799999999988865
No 134
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.44 E-value=0.34 Score=46.27 Aligned_cols=100 Identities=15% Similarity=0.142 Sum_probs=76.5
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLD---------DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY 201 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~---------~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~ 201 (422)
..++..+...|+|++|...+...+.-..... .......++.....+++..|++.+|...++++..+.
T Consensus 151 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---- 226 (336)
T 1p5q_A 151 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD---- 226 (336)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 3788999999999999999998875533221 022346788888999999999999999999887763
Q ss_pred CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 202 VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 202 ~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|.. ......-|..+...++|..|..+|-.+..-
T Consensus 227 -p~~--~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 259 (336)
T 1p5q_A 227 -SNN--EKGLSRRGEAHLAVNDFELARADFQKVLQL 259 (336)
T ss_dssp -TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -CCc--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 212 223445788888999999999999888763
No 135
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=94.42 E-value=2.5 Score=40.14 Aligned_cols=150 Identities=9% Similarity=0.085 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
....++..++..+++.|+++...+.+.......+..+. ... ....++ . ..
T Consensus 145 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~----------------~~~--~~~~~~-~----------~~- 194 (336)
T 1p5q_A 145 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESS----------------FSN--EEAQKA-Q----------AL- 194 (336)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCC----------------CCS--HHHHHH-H----------HH-
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhcccc----------------CCh--HHHHHH-H----------HH-
Confidence 34567889999999999999988887766654432211 000 111110 0 11
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
+..+-..++.+|...|+|++|+..++..+.- ++. ....+.....++...|++.+|...+.++..+..
T Consensus 195 -~~~~~~nla~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------ 261 (336)
T 1p5q_A 195 -RLASHLNLAMCHLKLQAFSAAIESCNKALEL----DSN--NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP------ 261 (336)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------
T ss_pred -HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC------
Confidence 1112448999999999999999999888643 222 345566678899999999999999999877632
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHH-HHHHHhhhh
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYS-YFFEAFEAF 238 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~-~f~ea~~~~ 238 (422)
.- ......-|.++...+++..|.. .|-..|..+
T Consensus 262 ~~-~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 295 (336)
T 1p5q_A 262 NN-KAAKTQLAVCQQRIRRQLAREKKLYANMFERL 295 (336)
T ss_dssp SC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11 1233445666777888888854 344445443
No 136
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=94.37 E-value=0.52 Score=50.40 Aligned_cols=159 Identities=13% Similarity=0.124 Sum_probs=105.0
Q ss_pred HHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 14 AQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 14 ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
+..+.+. +.++|++.|.+.++...... .++..++.++.+.|++++..+.+......-+..+.+. ..+
T Consensus 16 G~~~~~~G~~~eAi~~~~kAl~l~P~~~-------~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~-----~nL 83 (723)
T 4gyw_A 16 ANIKREQGNIEEAVRLYRKALEVFPEFA-------AAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAY-----SNM 83 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCSCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH-----HHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHH-----HHH
Confidence 4444444 68999999999998765432 3778899999999999999988887776544332222 222
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHH
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLL 172 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~ 172 (422)
-..+....+ .+.-++.++..++.-.+ +..+ -..|+.+|.+.|++++|.+.+++.++- ++. ..+.+..
T Consensus 84 g~~l~~~g~-~~~A~~~~~kAl~l~P~----~~~a--~~~Lg~~~~~~g~~~eAi~~~~~Al~l----~P~--~~~a~~~ 150 (723)
T 4gyw_A 84 GNTLKEMQD-VQGALQCYTRAIQINPA----FADA--HSNLASIHKDSGNIPEAIASYRTALKL----KPD--FPDAYCN 150 (723)
T ss_dssp HHHHHHTTC-HHHHHHHHHHHHHHCTT----CHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHH----CSC--CHHHHHH
T ss_pred HHHHHHcCC-HHHHHHHHHHHHHhCCC----CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--ChHHHhh
Confidence 222222222 23335555555553211 1222 348999999999999999999887642 222 2344555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
...++...+++..|...+.++..+.
T Consensus 151 L~~~l~~~g~~~~A~~~~~kal~l~ 175 (723)
T 4gyw_A 151 LAHCLQIVCDWTDYDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred hhhHHHhcccHHHHHHHHHHHHHhC
Confidence 5778899999999999998876543
No 137
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=94.17 E-value=0.44 Score=47.70 Aligned_cols=99 Identities=14% Similarity=0.098 Sum_probs=76.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhc---------cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLD---------DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY 201 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~---------~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~ 201 (422)
..++..++..|+|.+|...+...+.-..... .......++.....+++..+++.+|...++++..+.
T Consensus 272 ~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~---- 347 (457)
T 1kt0_A 272 KEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD---- 347 (457)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC----
Confidence 3788999999999999999998876543321 023446788888999999999999999999987763
Q ss_pred CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 202 VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 202 ~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
|.. ......-|..+...++|..|..+|-.+..
T Consensus 348 -p~~--~~a~~~~g~a~~~~g~~~~A~~~~~~al~ 379 (457)
T 1kt0_A 348 -SAN--EKGLYRRGEAQLLMNEFESAKGDFEKVLE 379 (457)
T ss_dssp -TTC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred -Ccc--HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 212 22344578888899999999999998876
No 138
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=94.08 E-value=2.7 Score=42.56 Aligned_cols=127 Identities=12% Similarity=0.103 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHh----cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHh
Q 014555 106 QIALCKEMVQWTRA----EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 106 ~~~l~~~~i~~~~~----~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~ 179 (422)
-..+++..++.... +.-..++. --.||.+|...|+|++|..+++..+.-..+.- +-......+.....+|..
T Consensus 328 A~~l~~~aL~~~~~~lg~~Hp~~a~~--~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~ 405 (490)
T 3n71_A 328 VVKLCRECLEKQEPVFADTNLYVLRL--LSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWH 405 (490)
T ss_dssp HHHHHHHHHHHHTTTBCTTSHHHHHH--HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 35666666664421 11112233 55899999999999999999988754433321 122344455566789999
Q ss_pred hCCHHHHHHHHHHHHHhhccC--CCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHh
Q 014555 180 LRNLPKAKAALTAARTAANAI--YVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAF 235 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~~~i--~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~ 235 (422)
+|++.+|..++.+|..+...+ +.||.+.. +...-+..++..+.|+.|-..|+.+-
T Consensus 406 ~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~-~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 406 AGHIEVGHGMICKAYAILLVTHGPSHPITKD-LEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998877654 34666554 44566666778888998888887763
No 139
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=94.03 E-value=4.8 Score=39.17 Aligned_cols=255 Identities=10% Similarity=0.062 Sum_probs=141.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
...+...++.++...|+++...+.+......-+.-..+.. ....++... ....+.-++.++..++..-+.-..|.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~--~~g~~l~~~---g~d~~eAl~~~~~al~l~P~~~~a~~ 170 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWH--FRRVLLKSL---QKDLHEEMNYITAIIEEQPKNYQVWH 170 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHT---TCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHH--HHHHHHHHc---ccCHHHHHHHHHHHHHHCCCCHHHHH
Confidence 3457778889999999999998888877764443222211 111222211 11123345666666664322233443
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
.++.++...|++++|+..++..+.- +++. ...+.....++...|++..|...++++..+. |.
T Consensus 171 ------~~g~~~~~~g~~~eAl~~~~kal~l----dP~~--~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~------P~ 232 (382)
T 2h6f_A 171 ------HRRVLVEWLRDPSQELEFIADILNQ----DAKN--YHAWQHRQWVIQEFKLWDNELQYVDQLLKED------VR 232 (382)
T ss_dssp ------HHHHHHHHHTCCTTHHHHHHHHHHH----CTTC--HHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC------TT
T ss_pred ------HHHHHHHHccCHHHHHHHHHHHHHh----CccC--HHHHHHHHHHHHHcCChHHHHHHHHHHHHhC------CC
Confidence 6778888999999999999887642 3332 3444555678888999999999999887763 22
Q ss_pred hhHHHHHHHHHHhch-hhcHHHH-----HHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCc-cchhhhhcccccccc
Q 014555 206 QQGTIDLQSGILHAE-EKDYKTA-----YSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQA-DDVAGIISSKAGLQY 278 (422)
Q Consensus 206 i~a~i~~~~g~~~~~-~~dy~~A-----~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~-~el~~ll~~~~~~~~ 278 (422)
-... ...-|.++.. .+.+..| ..+|-.+...- |....+..| +..++.... .+....+..-....
T Consensus 233 ~~~a-~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~-----P~~~~a~~~--l~~ll~~~g~~~~~~a~~~~~~~~- 303 (382)
T 2h6f_A 233 NNSV-WNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-----PHNESAWNY--LKGILQDRGLSKYPNLLNQLLDLQ- 303 (382)
T ss_dssp CHHH-HHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-----TTCHHHHHH--HHHHHTTTCGGGCHHHHHHHHHHT-
T ss_pred CHHH-HHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHC-----CCCHHHHHH--HHHHHHccCccchHHHHHHHHHhc-
Confidence 2222 2234444444 3443555 35566665421 222223222 233333221 01111111000001
Q ss_pred cCcc-hHHHHHHHHHHhcC------CHHH-HHHHHHHhHHh-hhcChhHHHhHHHHHHHHHHH
Q 014555 279 VGPE-LDAMKAVADAHSKR------SLKL-FETALRDFKAQ-LEEDPIVHRHLSSLYDTLLEQ 332 (422)
Q Consensus 279 ~~~~-i~~~~~L~~af~~~------dl~~-f~~~l~~~~~~-l~~D~~l~~~~~~L~~~i~~~ 332 (422)
.+|+ ...+..|..++... +... +.+.+.-+... +..||.-..+|..+...+..+
T Consensus 304 ~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 304 PSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 1232 34456677777542 2233 46677777776 789999888888887665544
No 140
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=93.92 E-value=0.17 Score=38.63 Aligned_cols=61 Identities=11% Similarity=0.007 Sum_probs=48.2
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
..++..+...|+|++|.+.++..+.. ++. ..+++.....++...|++.+|...+.++....
T Consensus 8 ~~~g~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 8 KEQGNSLFKQGLYREAVHCYDQLITA----QPQ--NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 37889999999999999999888653 221 23556667889999999999999999887653
No 141
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=93.86 E-value=1.7 Score=33.36 Aligned_cols=65 Identities=14% Similarity=0.088 Sum_probs=51.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhh-ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRL-DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~-~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|...+...+...... .+......++.....++...|++.+|...+.++...
T Consensus 43 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 43 NQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 67888999999999999999887654332 222334677777888999999999999999988765
No 142
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=93.81 E-value=1.9 Score=42.11 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=35.0
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchh-hHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQ-QGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i-~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
...++...|++.+|...+.++.... + ++.. ......+++......++|..|..+|-++..
T Consensus 340 lg~~~~~~~~~~~A~~~~~kaL~~~---~-~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~ 400 (472)
T 4g1t_A 340 LASLHALADQYEEAEYYFQKEFSKE---L-TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK 400 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC---C-CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC---C-CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3456667778888877777765432 1 2222 222233344444466778888777777765
No 143
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.73 E-value=5.1 Score=38.47 Aligned_cols=128 Identities=14% Similarity=0.136 Sum_probs=81.1
Q ss_pred hhcCCh---HHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHH
Q 014555 17 KEASNP---SDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGI 92 (422)
Q Consensus 17 ~~~~~~---~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~ 92 (422)
+++.+. =+|-+.+..+...- +... ....-..+.+=+..+.+.|++..-.++...+..-+..-........+.++
T Consensus 23 I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~--y~eAidLL~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL 100 (336)
T 3lpz_A 23 IAEGQPEEQYEAAQETRLVAARYSKQGN--WAAAVDILASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKL 100 (336)
T ss_dssp HHHCCHHHHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HhCCCCccccHHHHHHHHHHHHHHhhcC--HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 455566 56777776665321 0110 12233456666777788888887777765555433211111234677888
Q ss_pred HHHhhcCCCChhHHHHHHHHHHHHHHhc-----chhHHhhHHHHHHHHHHHhcccHHHHHHHH
Q 014555 93 IDAVAKIPGTSELQIALCKEMVQWTRAE-----KRTFLRQRVEARLAALLMESREYTEALTLL 150 (422)
Q Consensus 93 l~~~~~~~~~~~~~~~l~~~~i~~~~~~-----~r~~lr~~l~~~La~~~~~~g~~~~A~~~l 150 (422)
++.+...|.+...+.++++..|.|..+. |.-.| ...+|..|...|++.+|...+
T Consensus 101 ~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~L----H~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 101 LGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPEL----HHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHH----HHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHH----HHHHHHHHHccCCHHHHHHHH
Confidence 8888888876667889999999998742 33344 448899999999988875443
No 144
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=93.64 E-value=0.47 Score=47.51 Aligned_cols=100 Identities=7% Similarity=-0.019 Sum_probs=75.3
Q ss_pred hcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC--CCchhhHHHHHHH
Q 014555 139 ESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY--VPPAQQGTIDLQS 214 (422)
Q Consensus 139 ~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~--~~~~i~a~i~~~~ 214 (422)
..|+|++|..++.+.+.-..+.- +-...+..+-..+.+|..+|++.+|..++.++..+..+++ .||.+-..+.- -
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n-L 388 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLK-L 388 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH-H
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH-H
Confidence 35789999999988876544432 2234556666678899999999999999999988776653 36666655554 4
Q ss_pred HHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 215 GILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 215 g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
|.+|...|+|.+|..+|-.|+.-+.
T Consensus 389 a~~~~~qg~~~eA~~~~~~Al~i~~ 413 (433)
T 3qww_A 389 GRLYMGLENKAAGEKALKKAIAIME 413 (433)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccCHHHHHHHHHHHHHHHH
Confidence 5666789999999999998876554
No 145
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=93.60 E-value=4.5 Score=37.38 Aligned_cols=159 Identities=9% Similarity=-0.029 Sum_probs=101.2
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcC
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKI 99 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~ 99 (422)
.+.++|.+.|...++..+.+.+ .+...++.++...|+++.....+......-+.-...... ...+++. .
T Consensus 113 ~~~~~A~~~~~~al~~~p~~~~------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~---~a~~~~~--~ 181 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAIEDIDPT------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVT---AALMEYY--C 181 (308)
T ss_dssp TCHHHHHHHHHHHHTSSSSCTH------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHH---HHHHHHH--T
T ss_pred CCHHHHHHHHHHHHhccccCcc------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHH---HHHHHHH--H
Confidence 3689999999999987653321 156677888889999999888887776533221122211 1111111 1
Q ss_pred CCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh
Q 014555 100 PGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS 179 (422)
Q Consensus 100 ~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~ 179 (422)
.+..+.-.++++..++........|+ .++.++...|++++|..+++..+.... .+.....+++..-+++...
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~~~~~~------~~~~~~~~~g~~~~A~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~ 253 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDIPEYVL------AYIDYLSHLNEDNNTRVLFERVLTSGS--LPPEKSGEIWARFLAFESN 253 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHH------HHHHHHHTTCCHHHHHHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCcHHHHH------HHHHHHHHCCCHHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHHHH
Confidence 12233446677777665433334443 789999999999999999988764210 1112234455555667778
Q ss_pred hCCHHHHHHHHHHHHHhh
Q 014555 180 LRNLPKAKAALTAARTAA 197 (422)
Q Consensus 180 ~~n~~kak~~l~~a~~~~ 197 (422)
.|++..|..++.++....
T Consensus 254 ~g~~~~a~~~~~~a~~~~ 271 (308)
T 2ond_A 254 IGDLASILKVEKRRFTAF 271 (308)
T ss_dssp HSCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 899999999998887653
No 146
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.55 E-value=2.3 Score=40.55 Aligned_cols=132 Identities=14% Similarity=0.088 Sum_probs=84.0
Q ss_pred hhcCChHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHH
Q 014555 17 KEASNPSDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDA 95 (422)
Q Consensus 17 ~~~~~~~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~ 95 (422)
+.+.+.=+|-+.+..+...- +... ....-..+.+-+..+.+.|++..-.++...+..-...-.....+..+.++++.
T Consensus 24 I~~G~yYEAhQ~~Rtl~~Ry~~~~~--~~eAidlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 24 IKAGDYYEAHQTLRTIANRYVRSKS--YEHAIELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 45556667888877776431 1110 22334466777788888898888777655555433211112235577888888
Q ss_pred hhcCCCChhHHHHHHHHHHHHHHhcchh-HHhhHHHHHHHHHHHhcccHHHHHHHH
Q 014555 96 VAKIPGTSELQIALCKEMVQWTRAEKRT-FLRQRVEARLAALLMESREYTEALTLL 150 (422)
Q Consensus 96 ~~~~~~~~~~~~~l~~~~i~~~~~~~r~-~lr~~l~~~La~~~~~~g~~~~A~~~l 150 (422)
+...|.+...+.++++..+.|..+.+.. +=--.|..-+|..|...|++.+|...+
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~ 157 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYF 157 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Confidence 8877766567889999999998643211 111233558999999999998887544
No 147
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=93.41 E-value=4.1 Score=36.44 Aligned_cols=155 Identities=12% Similarity=0.001 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc---CCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK---IPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~---~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
.++..++.++...|+++.-.+.+..... ..-+. + ...+-..+.. .....+.-++.++..++. +.
T Consensus 7 ~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~--a---~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~-- 73 (273)
T 1ouv_A 7 KELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS--G---CFNLGVLYYQGQGVEKNLKKAASFYAKACDL----NY-- 73 (273)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH--H---HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC--
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH--H---HHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC----CC--
Confidence 4667788888888888887777766654 11111 1 1111111221 122223334555554442 11
Q ss_pred HhhHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 014555 125 LRQRVEARLAALLME----SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS----LRNLPKAKAALTAARTA 196 (422)
Q Consensus 125 lr~~l~~~La~~~~~----~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~----~~n~~kak~~l~~a~~~ 196 (422)
... ...|+.+|.. .|++++|.+.++..... + ..+.+..-..+|.. .+|+.+|...+.++...
T Consensus 74 ~~a--~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~ 143 (273)
T 1ouv_A 74 SNG--CHLLGNLYYSGQGVSQNTNKALQYYSKACDL----K----YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL 143 (273)
T ss_dssp HHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHH--HHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----C----CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc
Confidence 112 2377888888 88888888888776532 1 23344445667777 88888888888877664
Q ss_pred hccCCCCchhhHHHHHHHHHHhch----hhcHHHHHHHHHHH
Q 014555 197 ANAIYVPPAQQGTIDLQSGILHAE----EKDYKTAYSYFFEA 234 (422)
Q Consensus 197 ~~~i~~~~~i~a~i~~~~g~~~~~----~~dy~~A~~~f~ea 234 (422)
. ++.. ...-|.++.. .++|.+|..+|-.+
T Consensus 144 ~-----~~~a----~~~lg~~~~~~~~~~~~~~~A~~~~~~a 176 (273)
T 1ouv_A 144 N-----DGDG----CTILGSLYDAGRGTPKDLKKALASYDKA 176 (273)
T ss_dssp T-----CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred C-----cHHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 2 2121 1223555554 77888887777654
No 148
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=93.33 E-value=0.55 Score=43.43 Aligned_cols=96 Identities=14% Similarity=0.092 Sum_probs=72.1
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..+|..+...|+|++|.+.+...+.. ++. ...++.....++...|++.+|...++++..+. |... ..
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-----p~~~--~~ 74 (281)
T 2c2l_A 8 KEQGNRLFVGRKYPEAAACYGRAITR----NPL--VAVYYTNRALCYLKMQQPEQALADCRRALELD-----GQSV--KA 74 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CSC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-----TTCH--HH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-----CCCH--HH
Confidence 37889999999999999999887653 221 24556667889999999999999998876542 2122 23
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...|+|..|...|-.+.....
T Consensus 75 ~~~lg~~~~~~g~~~~A~~~~~~al~l~p 103 (281)
T 2c2l_A 75 HFFLGQCQLEMESYDEAIANLQRAYSLAK 103 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34568888899999999999988876443
No 149
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=92.89 E-value=1.3 Score=34.32 Aligned_cols=67 Identities=10% Similarity=0.029 Sum_probs=53.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD-DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
...++.+++..|+|..|...+...+....... .+....+++..-...+...|++.+|...+.++...
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45899999999999999999998876553322 13346677777788999999999999999988765
No 150
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=92.84 E-value=0.25 Score=36.88 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=43.4
Q ss_pred HHHHHhhcccc---cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 332 QNLCRLIEPYS---RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 332 ~~l~~i~~pYs---~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+.|+.++..-. +++..+||+.+|++...|.+.|.+|..+|.|.+.-+.+ |.=.+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~I~~~g~~~-~~W~i 73 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKEAGTP-PLWKI 73 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTSEEEECSSS-CEEEE
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEecCCCC-CceEe
Confidence 45556666555 89999999999999999999999999999998765544 44333
No 151
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=92.80 E-value=17 Score=41.78 Aligned_cols=90 Identities=23% Similarity=0.223 Sum_probs=59.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCC--------
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVP-------- 203 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~-------- 203 (422)
.+|+.+++.|++.+|++.+.+ .++....++ .+..+...|++..|-.+|..|+........+
T Consensus 1110 qLAKAql~~G~~kEAIdsYiK-------AdD~say~e----Va~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1110 QLAKAQLQKGMVKEAIDSYIK-------ADDPSSYME----VVQAANTSGNWEELVKYLQMARKKARESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHh-------cCChHHHHH----HHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHH
Confidence 789999999999999887743 344444444 4667888888888888888777554211000
Q ss_pred --------------chhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 204 --------------PAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 204 --------------~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
+.. +.+. .-|..+..+++|..|..+|..+
T Consensus 1179 Kl~rleele~fI~~~n~-ad~~-~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1179 KTNRLAELEEFINGPNN-AHIQ-QVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred hhcCHHHHHHHHhCCCH-HHHH-HHHHHHHhcCCHHHHHHHHHhh
Confidence 111 1222 3677778889999888766544
No 152
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=92.70 E-value=3 Score=34.27 Aligned_cols=118 Identities=13% Similarity=0.123 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
.-.+++..+..+++.|+|+...+.+.......+.. .. ...|.... .. ... ....
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~------------~~--~~~~~~~~-~~-------~~~--~~~~-- 63 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTL------------IL--REKPGEPE-WV-------ELD--RKNI-- 63 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HH--TSCTTSHH-HH-------HHH--HTHH--
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh------------cc--cCCCCHHH-HH-------HHH--HHHH--
Confidence 45578899999999999999988887666433211 00 11233211 10 000 0111
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
.+-..+|..|...|+|++|+..+...+.- ++. ....+.....++...|++..|...+.++..+.
T Consensus 64 --~~~~nla~~~~~~~~~~~A~~~~~~al~~----~p~--~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 64 --PLYANMSQCYLNIGDLHEAEETSSEVLKR----EET--NEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred --HHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCc--chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 11337899999999999999988887643 222 34566667889999999999999999987763
No 153
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=92.37 E-value=8.7 Score=38.44 Aligned_cols=189 Identities=13% Similarity=0.115 Sum_probs=103.6
Q ss_pred HHHHHHHhhcC-CCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCC
Q 014555 24 DAISMLYRVLD-DPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGT 102 (422)
Q Consensus 24 ~Ai~~l~~i~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~ 102 (422)
+|++.|...++ ..+.. ..+...++.++.+.|+++...+.+......-+ ... +.+-.....+.....+
T Consensus 304 ~A~~~~~~Al~~~~p~~-------~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p---~~~-~~~~~~~~~~~~~~~~- 371 (530)
T 2ooe_A 304 EAANIYERAISTLLKKN-------MLLYFAYADYEESRMKYEKVHSIYNRLLAIED---IDP-TLVYIQYMKFARRAEG- 371 (530)
T ss_dssp HHHHHHHHHTTTTCSSC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSS---SCH-HHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCccc-------HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccc---cCc-hHHHHHHHHHHHHhcC-
Confidence 88899988886 33322 22455677888889999999988887775322 111 1111222221110000
Q ss_pred hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHH-HHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC
Q 014555 103 SELQIALCKEMVQWTRAEKRTFLRQRVEARLAAL-LMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR 181 (422)
Q Consensus 103 ~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~-~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~ 181 (422)
.+.-.+++...++.....-..|+ ..+.+ +...|++++|.++++..+.... ++ .++.+.-+.+....|
T Consensus 372 ~~~A~~~~~~Al~~~~~~~~~~~------~~a~~~~~~~~~~~~A~~~~e~al~~~p--~~----~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 372 IKSGRMIFKKAREDARTRHHVYV------TAALMEYYCSKDKSVAFKIFELGLKKYG--DI----PEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHTCTTCCTHHHH------HHHHHHHHHTCCHHHHHHHHHHHHHHHT--TC----HHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHhccCCchHHHH------HHHHHHHHHcCChhHHHHHHHHHHHHCC--CC----HHHHHHHHHHHHhCC
Confidence 01112233333221111111222 22222 2358999999999998876432 11 344555566778899
Q ss_pred CHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 182 NLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 182 n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
+..+|+.+++++.... +.+|.-...+-..-+.+....|+..++...+-.+...+.
T Consensus 440 ~~~~Ar~~~~~al~~~---~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSG---SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp CHHHHHHHHHHHHHSC---CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred CHhhHHHHHHHHHhcc---CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999999999886642 224443333333334444455777777776666655553
No 154
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=92.35 E-value=0.64 Score=36.33 Aligned_cols=90 Identities=11% Similarity=0.050 Sum_probs=61.6
Q ss_pred cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhc
Q 014555 140 SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHA 219 (422)
Q Consensus 140 ~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~ 219 (422)
.|++++|...+++.+.. ..+......++.....++...|++.+|...+.++.... |.- ......-|..+.
T Consensus 3 ~g~~~~A~~~~~~al~~---~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~------p~~-~~~~~~l~~~~~ 72 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS---GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF------PNH-QALRVFYAMVLY 72 (117)
T ss_dssp ----CCCHHHHHHHHSS---CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTC-HHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHc---CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCc-hHHHHHHHHHHH
Confidence 57888888888877631 00012345666777889999999999999999887662 111 334455788888
Q ss_pred hhhcHHHHHHHHHHHhhhhh
Q 014555 220 EEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 220 ~~~dy~~A~~~f~ea~~~~~ 239 (422)
..|+|.+|...|-.+.....
T Consensus 73 ~~g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 73 NLGRYEQGVELLLKIIAETS 92 (117)
T ss_dssp HHTCHHHHHHHHHHHHHHHC
T ss_pred HcCCHHHHHHHHHHHHHhCC
Confidence 99999999999998876543
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=92.30 E-value=0.68 Score=43.54 Aligned_cols=122 Identities=11% Similarity=0.074 Sum_probs=84.9
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCch
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
|..+.+-+|.++.+.|+|++|.+.+..+.. ..+. .+ .......+++..++++.|...++.+. ..+ +|.
T Consensus 101 r~dl~LayA~~L~~~g~y~eA~~~l~~~~~----~~p~--~~-~~~~~a~l~~~~~r~~dA~~~l~~a~----~~~-d~~ 168 (282)
T 4f3v_A 101 PLAITMGFAACEAAQGNYADAMEALEAAPV----AGSE--HL-VAWMKAVVYGAAERWTDVIDQVKSAG----KWP-DKF 168 (282)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHTSSCC----TTCH--HH-HHHHHHHHHHHTTCHHHHHHHHTTGG----GCS-CHH
T ss_pred HhHHHHHHHHHHHHCCCHHHHHHHHHHHHh----cCCc--hH-HHHHHHHHHHHcCCHHHHHHHHHHhh----ccC-Ccc
Confidence 455566889999999999999988887642 1121 22 44555679999999999999886331 222 556
Q ss_pred hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChh-HHHHHHHHHHHHHHhcC
Q 014555 206 QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPR-AVFSLKYMLLCKIMVSQ 262 (422)
Q Consensus 206 i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~-~~~~lky~vL~~lL~~~ 262 (422)
..+.+..+-|..+...|+|.+|..+|-.+..+.. +|. ...+..+..+|-.-.+.
T Consensus 169 ~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~---~P~~~~da~~~~glaL~~lGr 223 (282)
T 4f3v_A 169 LAGAAGVAHGVAAANLALFTEAERRLTEANDSPA---GEACARAIAWYLAMARRSQGN 223 (282)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTT---TTTTHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCC---CccccHHHHHHHHHHHHHcCC
Confidence 5667888899999999999999999998864321 133 34454555555544443
No 156
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=92.05 E-value=2.9 Score=35.71 Aligned_cols=107 Identities=14% Similarity=-0.028 Sum_probs=74.9
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhh------ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc-cCCCC
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRL------DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN-AIYVP 203 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~------~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~-~i~~~ 203 (422)
..++..++..|+|++|++.+...+.-.... +........+.....++..+|++..|-..+++|..+-| ....+
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 377888999999999999999887654431 00112334788888899999999999999999877611 11112
Q ss_pred chh-hHHHH--HHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 204 PAQ-QGTID--LQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 204 ~~i-~a~i~--~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
|.- .+-++ .--|..+..-++|.+|...|-.+.+-
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel 131 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 131 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 322 22200 33677778889999999999888653
No 157
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=91.88 E-value=1.9 Score=42.87 Aligned_cols=105 Identities=12% Similarity=0.106 Sum_probs=76.1
Q ss_pred HHHHhcccHHHHHHHHHHHHHHHhhh--ccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC--CCchhhHHH
Q 014555 135 ALLMESREYTEALTLLTSLVKEVRRL--DDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIY--VPPAQQGTI 210 (422)
Q Consensus 135 ~~~~~~g~~~~A~~~l~~l~~e~~~~--~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~--~~~~i~a~i 210 (422)
.-+...|+|++|.++++..+.-..+. .+-...+.++-.-+.+|..+|++.+|..++.++..+..+++ .||.+-..+
T Consensus 295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l 374 (429)
T 3qwp_A 295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV 374 (429)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence 33556789999999888776432222 12345666777778899999999999999999987776653 356665555
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
.. -|.+|...|+|.+|..+|-.|+.-+..
T Consensus 375 ~n-La~~~~~~g~~~eA~~~~~~Al~i~~~ 403 (429)
T 3qwp_A 375 MK-VGKLQLHQGMFPQAMKNLRLAFDIMRV 403 (429)
T ss_dssp HH-HHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HH-HHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 54 456677899999999999988765543
No 158
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=91.67 E-value=6.9 Score=38.78 Aligned_cols=152 Identities=11% Similarity=0.104 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
..-.++..++..+++.|+|+.....+.......+..+. + ..+...+ ....
T Consensus 266 ~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------------~-----~~~~~~~-----------~~~~- 315 (457)
T 1kt0_A 266 EQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYG-------------L-----SEKESKA-----------SESF- 315 (457)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCS-------------C-----CHHHHHH-----------HHHH-
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccccc-------------C-----ChHHHHH-----------HHHH-
Confidence 44567889999999999999988887766654432211 0 0010100 0011
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
+..+-..++..|...|+|++|+..++..+.- ++. ....+.....+|...+++.+|...+.+|..+...
T Consensus 316 -~~~~~~nla~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~----- 383 (457)
T 1kt0_A 316 -LLAAFLNLAMCYLKLREYTKAVECCDKALGL----DSA--NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ----- 383 (457)
T ss_dssp -HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------
T ss_pred -HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc----CCc--cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----
Confidence 1222448899999999999999999888643 222 3455667788999999999999999988765321
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHH-Hhhhhhc
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFE-AFEAFNA 240 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~e-a~~~~~~ 240 (422)
-. .....-|.++...+++..|.+..|. .|..+.+
T Consensus 384 -~~-~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k~~~ 418 (457)
T 1kt0_A 384 -NK-AARLQISMCQKKAKEHNERDRRIYANMFKKFAE 418 (457)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred -CH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 11 2233455666677788877765543 3544443
No 159
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=91.48 E-value=5.9 Score=33.63 Aligned_cols=118 Identities=14% Similarity=0.119 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 43 LRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
....-..+..++..++..|+|+...+.+.......+.-+ +...... ... .
T Consensus 34 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-------------------~~~~~~~---~~~------~-- 83 (198)
T 2fbn_A 34 KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------------EWDDQIL---LDK------K-- 83 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------------TCCCHHH---HHH------H--
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc-------------------ccchhhH---HHH------H--
Confidence 344556788899999999999998887776665332211 1000000 000 0
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.-++..+-..++..+...|+|++|...+...+.- ++. ....+.....++...|++.+|...+.++..+
T Consensus 84 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 151 (198)
T 2fbn_A 84 KNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI----DKN--NVKALYKLGVANMYFGFLEEAKENLYKAASL 151 (198)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----Ccc--cHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 0011122348899999999999999999887653 222 2455666788999999999999999988776
No 160
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=91.31 E-value=1.5 Score=44.77 Aligned_cols=94 Identities=14% Similarity=0.047 Sum_probs=71.6
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
..++..+...|++++|.+.+++.+.. ++. ..+.+.....++...|++.+|...+.++..... .- ...
T Consensus 27 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~-~~~ 93 (568)
T 2vsy_A 27 LMLADAELGMGDTTAGEMAVQRGLAL----HPG--HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAP------EH-PGI 93 (568)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTT----STT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CC-HHH
Confidence 37899999999999999998887642 221 245566668899999999999999998877631 11 233
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...-|..+...++|.+|...|-.+...
T Consensus 94 ~~~la~~~~~~g~~~~A~~~~~~al~~ 120 (568)
T 2vsy_A 94 ALWLGHALEDAGQAEAAAAAYTRAHQL 120 (568)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445678888999999999999888654
No 161
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=91.07 E-value=1.2 Score=34.61 Aligned_cols=62 Identities=15% Similarity=0.051 Sum_probs=48.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|.+.+..++..-. +.....+.+.....++...|++.+|...++.+...
T Consensus 44 ~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 44 WLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 778889999999999999998875321 12223556666788999999999999999887665
No 162
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=90.85 E-value=1.4 Score=33.36 Aligned_cols=63 Identities=22% Similarity=0.160 Sum_probs=49.7
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
..++.+|...|++++|.+.++..+.. ++. ..+.+.....++...|++.+|...+.++..+...
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVET----DPD--YVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----STT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 38899999999999999999988743 221 2335666688999999999999999998776543
No 163
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.81 E-value=2.1 Score=34.11 Aligned_cols=98 Identities=14% Similarity=0.102 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
-.+.+..+..+++.|+|+.-.+.+...... .|+.. ..|
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~----------------------~p~~~------------------~~~-- 50 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR----------------------DPENA------------------ILY-- 50 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTCH------------------HHH--
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCCH------------------HHH--
Confidence 346678889999999998888776544321 23321 112
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
..++..|...|++++|++.++..+.- ++. ..+.+.....++...|++.+|...+.++..+
T Consensus 51 ----~~~~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 51 ----SNRAACLTKLMEFQRALDDCDTCIRL----DSK--FIKGYIRKAACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp ----HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ----HHHhhHHHhhccHHHHHHHHHHHHHh----hhh--hhHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 26788899999999999988887632 222 3455666788999999999999999998776
No 164
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=90.65 E-value=2.8 Score=34.87 Aligned_cols=126 Identities=11% Similarity=0.056 Sum_probs=69.2
Q ss_pred HHHHHhh-cCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHH
Q 014555 12 SIAQAKE-ASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVR 90 (422)
Q Consensus 12 ~~ak~~~-~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~ 90 (422)
..+..+. ..+.++|++.|...++..+... .+...++.++...|+++.-.+.+.......+.-+.. ..
T Consensus 15 ~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~-----~~ 82 (177)
T 2e2e_A 15 DPLHQFASQQNPEAQLQALQDKIRANPQNS-------EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAEL-----YA 82 (177)
T ss_dssp TTTCCCC-----CCCCHHHHHHHHHCCSCH-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHH-----HH
T ss_pred hhhhhhhhccCHHHHHHHHHHHHHhCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHH-----HH
Confidence 3333433 3357889999998887655332 367789999999999999888887776644322111 11
Q ss_pred HHHHH-hhcCCCC-hhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHH
Q 014555 91 GIIDA-VAKIPGT-SELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVK 155 (422)
Q Consensus 91 ~~l~~-~~~~~~~-~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~ 155 (422)
.+-.. +....+- .+.-+..++..++...+.... -..++.++...|++++|...+...+.
T Consensus 83 ~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~------~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 83 ALATVLYYQASQHMTAQTRAMIDKALALDSNEITA------LMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHH------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHH------HHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 11111 1111110 022344455554432111111 23677777788888888777777654
No 165
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=90.65 E-value=0.32 Score=36.73 Aligned_cols=58 Identities=12% Similarity=0.150 Sum_probs=43.4
Q ss_pred HHHHHHhhcccc---cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 331 EQNLCRLIEPYS---RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 331 ~~~l~~i~~pYs---~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
++.|+.++.... +++..+||+.||++...|.+.|.+|-.+|.|.-. +...|.=.+..+
T Consensus 12 ~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~I~~~-g~~~~~W~i~~~ 72 (81)
T 1qbj_A 12 EQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGKLQKE-AGTPPLWKIAVS 72 (81)
T ss_dssp HHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-SSSSCEEEEC--
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEec-CCCCCeeEEeCc
Confidence 344556666555 9999999999999999999999999999999543 333355555443
No 166
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=90.48 E-value=0.19 Score=37.69 Aligned_cols=44 Identities=20% Similarity=0.204 Sum_probs=39.7
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
...|+.++....++++++||+.|++|+.-|.+.|..+...|.|.
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~l~ 47 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGKAV 47 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEE
Confidence 35677788888999999999999999999999999999999874
No 167
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=90.41 E-value=10 Score=36.47 Aligned_cols=119 Identities=9% Similarity=0.034 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcch
Q 014555 43 LRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKR 122 (422)
Q Consensus 43 ~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r 122 (422)
....-.++..++..+++.|+|+...+.+..........+ . . . . .....+ ...
T Consensus 219 ~~~~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~------------~--~-~-~-~~~~~~-----------~~~ 270 (370)
T 1ihg_A 219 ILLISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSR------------A--A-A-E-DADGAK-----------LQP 270 (370)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH------------H--H-S-C-HHHHGG-----------GHH
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCc------------c--c-c-C-hHHHHH-----------HHH
Confidence 344456788999999999999999888876665433211 0 0 0 0 000000 000
Q ss_pred hHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 123 TFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 123 ~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
. ...+-..+|..|...|+|++|++.++..+. .++. ....+.....++...+++.+|...+.+|..+.
T Consensus 271 ~--~~~~~~nla~~~~~~g~~~~A~~~~~~al~----~~p~--~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 271 V--ALSCVLNIGACKLKMSDWQGAVDSCLEALE----IDPS--NTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp H--HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----TCTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHhccCHHHHHHHHHHHHH----hCch--hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 1 111234889999999999999999888764 2222 34556667889999999999999999988763
No 168
>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=90.32 E-value=1.3 Score=42.34 Aligned_cols=113 Identities=11% Similarity=0.055 Sum_probs=71.3
Q ss_pred hhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcchHHHHHHHHHHhc---------------CCHHHHHHHHHHh
Q 014555 244 PRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPELDAMKAVADAHSK---------------RSLKLFETALRDF 308 (422)
Q Consensus 244 ~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~i~~~~~L~~af~~---------------~dl~~f~~~l~~~ 308 (422)
+...+...|.+|..+... ++...+...-....++|.+..-..+..++.+ ++|..|..+...
T Consensus 113 ~ne~EF~aY~lL~~l~~~---~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~~~- 188 (316)
T 3t5v_A 113 PNEAEFRAYALLSKIRDP---QYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLMQS- 188 (316)
T ss_dssp TTHHHHHHHHHHHSTTCT---HHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHHTC-
T ss_pred CCHHHHHHHHHHHHhccc---hHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHHhc-
Confidence 444555557777765432 3321111110011245666555567777652 789999986542
Q ss_pred HHhhhcChhHHHhH-HHHHHHHHHHHHHHhhccc----ccccchhHHHHhCCC-hHHHHHHH
Q 014555 309 KAQLEEDPIVHRHL-SSLYDTLLEQNLCRLIEPY----SRVEIAHIAELIELP-IDHVEKKL 364 (422)
Q Consensus 309 ~~~l~~D~~l~~~~-~~L~~~i~~~~l~~i~~pY----s~I~l~~la~~l~l~-~~evE~~l 364 (422)
...|++..++ +....++|..+|..+.+.| .+++++++++.|+.+ .++++..+
T Consensus 189 ----~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~ 246 (316)
T 3t5v_A 189 ----PSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFC 246 (316)
T ss_dssp ----TTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHH
T ss_pred ----cCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHH
Confidence 1135554433 3356788999999999998 489999999999996 78877666
No 169
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=90.00 E-value=0.47 Score=36.37 Aligned_cols=46 Identities=13% Similarity=0.182 Sum_probs=41.2
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL 377 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkI 377 (422)
..|+.++....++++++||+.||+|+.-|.+.|..+...|.|.-.-
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEe
Confidence 4577788888999999999999999999999999999999887643
No 170
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=89.99 E-value=15 Score=35.65 Aligned_cols=183 Identities=10% Similarity=0.074 Sum_probs=107.7
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENR-AQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK 98 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~ 98 (422)
.+.++|++.|..+++..+... .+...++.++...|+ +++-.+.+......-+.-..+.. -...++.....
T Consensus 111 g~~~~Al~~~~~al~l~P~~~-------~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~--~~g~~~~~~g~ 181 (382)
T 2h6f_A 111 ERSERAFKLTRDAIELNAANY-------TVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWH--HRRVLVEWLRD 181 (382)
T ss_dssp CCCHHHHHHHHHHHHHCTTCH-------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH--HHHHHHHHHTC
T ss_pred CChHHHHHHHHHHHHhCccCH-------HHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHH--HHHHHHHHccC
Confidence 357999999999998765432 356677888999996 99988888877764443222221 22223333321
Q ss_pred CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Q 014555 99 IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF 178 (422)
Q Consensus 99 ~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~ 178 (422)
.+.-+..++..++.-.++-..|. .++.++...|++++|++.+...+.. +... ...+.....++.
T Consensus 182 ----~~eAl~~~~kal~ldP~~~~a~~------~lg~~~~~~g~~~eAl~~~~~al~l----~P~~--~~a~~~lg~~l~ 245 (382)
T 2h6f_A 182 ----PSQELEFIADILNQDAKNYHAWQ------HRQWVIQEFKLWDNELQYVDQLLKE----DVRN--NSVWNQRYFVIS 245 (382)
T ss_dssp ----CTTHHHHHHHHHHHCTTCHHHHH------HHHHHHHHHTCCTTHHHHHHHHHHH----CTTC--HHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHhCccCHHHHH------HHHHHHHHcCChHHHHHHHHHHHHh----CCCC--HHHHHHHHHHHH
Confidence 12235666666664322223333 7788899999999999999887643 2222 223333445666
Q ss_pred h-hCCHHHHH-----HHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhh--cHHHHHHHHHHH
Q 014555 179 S-LRNLPKAK-----AALTAARTAANAIYVPPAQQGTIDLQSGILHAEEK--DYKTAYSYFFEA 234 (422)
Q Consensus 179 ~-~~n~~kak-----~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~--dy~~A~~~f~ea 234 (422)
. .+....|. ..+.+|..+ +|.-.......++.+.. .+ +|..|...+.++
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l------~P~~~~a~~~l~~ll~~-~g~~~~~~a~~~~~~~ 302 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKL------VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDL 302 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHH------STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred HhcCcchHHHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHc-cCccchHHHHHHHHHh
Confidence 6 44446663 556666554 33333334444444433 33 788887655554
No 171
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=89.95 E-value=1.9 Score=33.15 Aligned_cols=61 Identities=18% Similarity=0.066 Sum_probs=48.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
..++.+|...|++++|...+...+.. ++. ..+.+.....++...|++.+|...+.++....
T Consensus 23 ~~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 83 (115)
T 2kat_A 23 FTLGKTYAEHEQFDAALPHLRAALDF----DPT--YSVAWKWLGKTLQGQGDRAGARQAWESGLAAA 83 (115)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHH----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 37899999999999999999887643 221 24455566789999999999999999887664
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=89.80 E-value=2.1 Score=34.53 Aligned_cols=100 Identities=20% Similarity=0.104 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
..++..++..++..|++++-.+.+..... ..|+.. ..|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~----------------------~~p~~~------------------~~~~- 56 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM----------------------LDHYDA------------------RYFL- 56 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HCTTCH------------------HHHH-
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH----------------------hCCccH------------------HHHH-
Confidence 34667788888888888877666543332 123321 1222
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
.++.++...|++++|...+...+.- ++. ..+.+.....++...|++.+|...+.++.....
T Consensus 57 -----~lg~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 117 (142)
T 2xcb_A 57 -----GLGACRQSLGLYEQALQSYSYGALM----DIN--EPRFPFHAAECHLQLGDLDGAESGFYSARALAA 117 (142)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhHHHHHHHHHHHHhc----CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 6788899999999999999887643 221 123445557789999999999999999877653
No 173
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=89.74 E-value=1.2 Score=34.66 Aligned_cols=62 Identities=15% Similarity=0.129 Sum_probs=49.1
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
-..|+.+|...|++++|.+.++..+.. ++.. .+++.....++...|++.+|...+.++....
T Consensus 30 ~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 30 YLGLGSTFRTLGEYRKAEAVLANGVKQ----FPNH--QALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCc--hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 348999999999999999999988643 2211 4555666789999999999999999887654
No 174
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=89.72 E-value=14 Score=35.00 Aligned_cols=143 Identities=12% Similarity=0.062 Sum_probs=85.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc----chhHHHHHHHHHHHHHhhC--CHHHHHHHHHHHHHhhccCCCC
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDD----KLLLVDIDLLESKLHFSLR--NLPKAKAALTAARTAANAIYVP 203 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~----~~~~~e~~l~~~~~~~~~~--n~~kak~~l~~a~~~~~~i~~~ 203 (422)
...++.+++..|+.+.|.+.++.+..- ++ ...-+-+.+.++.+.+..| ++..|-.+|+.... ..+ +
T Consensus 139 ~~l~vqi~L~~~r~d~A~k~l~~~~~~----~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~---~~p-~ 210 (310)
T 3mv2_B 139 LLLAIEVALLNNNVSTASTIFDNYTNA----IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQ---TFP-T 210 (310)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHT---TSC-S
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc----CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH---hCC-C
Confidence 448999999999999999999887532 22 1234556777887787777 88888777776522 221 1
Q ss_pred ch-hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccC-----ChhHHHHHHHHHHHHHHhcCccchhhhhccccccc
Q 014555 204 PA-QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALE-----DPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQ 277 (422)
Q Consensus 204 ~~-i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~-----~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~ 277 (422)
+. ....+. .++..|+|.+|-..+-.....+.+.+ +|.--.++..++.+....+. +-..++.....
T Consensus 211 ~~~~~lLln-----~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~-- 281 (310)
T 3mv2_B 211 WKTQLGLLN-----LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK-- 281 (310)
T ss_dssp HHHHHHHHH-----HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH--
T ss_pred cccHHHHHH-----HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH--
Confidence 11 111122 68889999999988765544443321 23445566666655555544 33333332211
Q ss_pred ccCcchHHHHHHH
Q 014555 278 YVGPELDAMKAVA 290 (422)
Q Consensus 278 ~~~~~i~~~~~L~ 290 (422)
..|+-+++.++.
T Consensus 282 -~~P~hp~i~d~~ 293 (310)
T 3mv2_B 282 -LDHEHAFIKHHQ 293 (310)
T ss_dssp -TTCCCHHHHHHH
T ss_pred -hCCCChHHHHHH
Confidence 245555555543
No 175
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=89.56 E-value=3.1 Score=30.73 Aligned_cols=61 Identities=16% Similarity=0.105 Sum_probs=48.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHH-HHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVD-IDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e-~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
..++..+...|++++|.+.++..+.. ++. ... .+.....++...|++.+|...+.++....
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT----EPV--GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH----CSS--THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH----CCC--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 37788999999999999999887653 221 123 56666889999999999999999887763
No 176
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=89.25 E-value=19 Score=35.89 Aligned_cols=114 Identities=11% Similarity=0.042 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHh-------cccHH-------HHHHHHHHHHHHHhhhccchhHHHHHHH
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLME-------SREYT-------EALTLLTSLVKEVRRLDDKLLLVDIDLL 172 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~-------~g~~~-------~A~~~l~~l~~e~~~~~~~~~~~e~~l~ 172 (422)
+.+++.++......-.+|+ .++.++.. .|+++ +|.+++...+.. ..+. ...++..
T Consensus 258 ~~~y~~al~~~p~~~~~w~------~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~---~~p~--~~~l~~~ 326 (530)
T 2ooe_A 258 MFAYEQCLLVLGHHPDIWY------EAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST---LLKK--NMLLYFA 326 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHH------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTT---TCSS--CHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHH------HHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHH---hCcc--cHHHHHH
Confidence 4566666665434445666 56666665 68876 777776665421 1222 2344555
Q ss_pred HHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 173 ESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 173 ~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
-+.++...|++.+|+..|+++..+. |.-...+....|.+....+++..|...|-.+...
T Consensus 327 ~~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~ 385 (530)
T 2ooe_A 327 YADYEESRMKYEKVHSIYNRLLAIE------DIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED 385 (530)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSS------SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCHHHHHHHHHHHhCcc------ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5667778899999999999887642 2211234455566666788899998888888764
No 177
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=89.13 E-value=4.9 Score=32.97 Aligned_cols=101 Identities=15% Similarity=0.017 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHH
Q 014555 46 KELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFL 125 (422)
Q Consensus 46 ~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~l 125 (422)
.-.++..++..++..|+|+...+.+....... |+.. ..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~----------------------p~~~------------------~~-- 47 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA----------------------PANP------------------IY-- 47 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------TTCH------------------HH--
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------CcCH------------------HH--
Confidence 45577888899999999888887775554321 2210 11
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
-..++.+|...|++++|...+...+.- ++. ....+.....++...|++.+|...+.++..+..
T Consensus 48 ----~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 110 (164)
T 3sz7_A 48 ----LSNRAAAYSASGQHEKAAEDAELATVV----DPK--YSKAWSRLGLARFDMADYKGAKEAYEKGIEAEG 110 (164)
T ss_dssp ----HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHS
T ss_pred ----HHHHHHHHHHccCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 227788899999999999998887643 222 245566678899999999999999999887754
No 178
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=89.13 E-value=1.8 Score=33.13 Aligned_cols=100 Identities=11% Similarity=-0.052 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
....++..++..++..|+++...+.+...... .|+.. ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----------------------~~~~~------------------~~- 48 (131)
T 2vyi_A 10 AEAERLKTEGNEQMKVENFEAAVHFYGKAIEL----------------------NPANA------------------VY- 48 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTCH------------------HH-
T ss_pred hhhHHHHHHHHHHHHccCHHHHHHHHHHHHHc----------------------CCCCH------------------HH-
Confidence 44567778888888888888777665444321 12210 11
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-..++.++...|++++|.+.+...+.. ++. ....+.....++...|++.+|...+.++...
T Consensus 49 -----~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 49 -----FCNRAAAYSKLGNYAGAVQDCERAICI----DPA--YSKAYGRMGLALSSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp -----HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhhchHHHHHHHHHHHhc----Ccc--CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 226788899999999999999887653 111 1345566678999999999999999988766
No 179
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=88.82 E-value=0.83 Score=46.01 Aligned_cols=92 Identities=9% Similarity=-0.027 Sum_probs=53.2
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHH
Q 014555 133 LAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDL 212 (422)
Q Consensus 133 La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~ 212 (422)
+|..+...|+|++|.+.+++.+.. ++. ..+.+.....++...|++.+|...+++|..+. |.. +....
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~----~p~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~------p~~-~~~~~ 78 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIEL----NPS--NAIYYGNRSLAYLRTECYGYALGDATRAIELD------KKY-IKGYY 78 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC------TTC-HHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCC-HHHHH
Confidence 445556667777777776665532 111 13444555666777777777777777665542 111 12223
Q ss_pred HHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 213 QSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 213 ~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
.-|..+...++|.+|...|-.+.+.
T Consensus 79 ~lg~~~~~~g~~~eA~~~~~~al~~ 103 (477)
T 1wao_1 79 RRAASNMALGKFRAALRDYETVVKV 103 (477)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3466666777777777777666553
No 180
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=88.67 E-value=1 Score=42.97 Aligned_cols=99 Identities=14% Similarity=0.026 Sum_probs=72.0
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhc---------c--chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLD---------D--KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~---------~--~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
..++..+...|+|.+|...+...+....... + ......+++....+++..+++.+|...++++....
T Consensus 183 ~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-- 260 (338)
T 2if4_A 183 KMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEE-- 260 (338)
T ss_dssp HHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 3778888999999999999988764322110 0 11122477778889999999999999999887652
Q ss_pred CCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 200 IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 200 i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
|... .....-|..+...++|..|..+|-.+..
T Consensus 261 ---p~~~--~a~~~lg~a~~~~g~~~~A~~~l~~al~ 292 (338)
T 2if4_A 261 ---EKNP--KALFRRGKAKAELGQMDSARDDFRKAQK 292 (338)
T ss_dssp ---TTCH--HHHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred ---CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2122 2344578888899999999999988865
No 181
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=88.46 E-value=6.9 Score=29.89 Aligned_cols=100 Identities=12% Similarity=0.016 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
....++..++..+...|+++...+.+....... |+.. ..
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----------------------~~~~------------------~~- 52 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN----------------------PKDA------------------KL- 52 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC----------------------TTCH------------------HH-
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------------CCcH------------------HH-
Confidence 556788899999999999998887776665421 1110 01
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
-..++.++...|++++|.+.+...+.. ++. ...++.....++...|++.+|...+.++...
T Consensus 53 -----~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 53 -----YSNRAACYTKLLEFQLALKDCEECIQL----EPT--FIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp -----HHHHHHHHTTTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHhccHHHHHHHHHHHHHh----CCC--chHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 114555566666666666666655432 111 1233344455666666666666666666554
No 182
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=88.38 E-value=3.2 Score=32.27 Aligned_cols=60 Identities=22% Similarity=0.279 Sum_probs=48.0
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
.++..+...|++++|...+...+.- ++. ....+.....++...|++.+|...+.++..+.
T Consensus 43 ~~a~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 43 NRAAALAKLMSFPEAIADCNKAIEK----DPN--FVRAYIRKATAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh----CCC--cHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhC
Confidence 7788899999999999999887643 222 24556667889999999999999999887764
No 183
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.00 E-value=8.2 Score=30.18 Aligned_cols=102 Identities=16% Similarity=0.010 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
...+..++..++..|+|+...+.+....... |+. ... ...
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----------------------~~~-~~~--------------~~~--- 67 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD----------------------ATP-QDQ--------------AVL--- 67 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC----------------------CCH-HHH--------------HHH---
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc----------------------ccc-hHH--------------HHH---
Confidence 3467788999999999998887776655422 110 000 011
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
-..++..+...|++++|...+...+.. ++. ..+++.....++...|++.+|...+.++....
T Consensus 68 ---~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~ 129 (148)
T 2dba_A 68 ---HRNRAACHLKLEDYDKAETEASKAIEK----DGG--DVKALYRRSQALEKLGRLDQAVLDLQRCVSLE 129 (148)
T ss_dssp ---HHHHHHHHHHTTCHHHHHHHHHHHHHH----TSC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHccHHHHHHHHHHHHhh----Ccc--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 237788899999999999988887643 221 24556667888999999999999999887653
No 184
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=87.72 E-value=7.2 Score=30.32 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ 127 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~ 127 (422)
.++..++..++..|+|+...+.+...... .|+.. ..
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~----------------------~~~~~------------------~~---- 45 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITR----------------------NPLVA------------------VY---- 45 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTCH------------------HH----
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhh----------------------CcCcH------------------HH----
Confidence 45677888888888888777666555431 12210 11
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 128 RVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 128 ~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
-..++.++...|++++|...+...+.- ++. ..+.+.....++...|++.+|...+.++.....
T Consensus 46 --~~~l~~~~~~~~~~~~A~~~~~~al~~----~p~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 46 --YTNRALCYLKMQQPEQALADCRRALEL----DGQ--SVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHhcCHHHHHHHHHHHHHh----Cch--hHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHCh
Confidence 227788899999999999988887643 222 344566667899999999999999998876653
No 185
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=87.53 E-value=0.8 Score=32.97 Aligned_cols=42 Identities=10% Similarity=0.257 Sum_probs=35.0
Q ss_pred HHHhhccc-ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPY-SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pY-s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
|+.++... ..++..+||+.+|+|...|.+.|..|..+|.|..
T Consensus 15 IL~~L~~~~~~~s~~eLA~~lglsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 15 ILQVLSDDGGPVAIFQLVKKCQVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHCSCEEHHHHHHHHCSCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEec
Confidence 44444433 5699999999999999999999999999999754
No 186
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=87.48 E-value=0.73 Score=34.38 Aligned_cols=45 Identities=18% Similarity=0.158 Sum_probs=37.2
Q ss_pred HHHHHHhhccc------ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 331 EQNLCRLIEPY------SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 331 ~~~l~~i~~pY------s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
...|+.+++.+ -.++..+||+.||+|+.-|.+.|..|-..|.|.-
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS~~TVrr~L~~Le~kG~I~R 56 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAAGLSIYQVRLYLEQLHDVGVLEK 56 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 34455555555 6799999999999999999999999999999853
No 187
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=87.24 E-value=3.2 Score=31.27 Aligned_cols=59 Identities=12% Similarity=0.083 Sum_probs=45.4
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|...+...... ++. ....+.....++...|++.+|...+.++...
T Consensus 48 ~la~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 48 NLGNAYYKQGDYDEAIEYYQKALEL----DPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh----CCc--cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 6788889999999999998887643 111 1344455677899999999999999888665
No 188
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=86.93 E-value=3.5 Score=33.77 Aligned_cols=61 Identities=15% Similarity=0.052 Sum_probs=47.2
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhc
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAAN 198 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~ 198 (422)
.++.++...|++++|.+.+...+.- ++.. .+.+.....++...|++.+|...+.++.....
T Consensus 60 ~lg~~~~~~g~~~~A~~~~~~al~l----~p~~--~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 60 GLGACRQAMGQYDLAIHSYSYGAVM----DIXE--PRFPFHAAECLLQXGELAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----STTC--THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHhc----CCCC--chHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 6788899999999999999887642 2211 23445557789999999999999999877653
No 189
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=86.91 E-value=2.7 Score=31.13 Aligned_cols=61 Identities=13% Similarity=0.041 Sum_probs=46.6
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh-CCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL-RNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~-~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|.+.++..+.. .+.....+++.....++... |++.+|...+..+...
T Consensus 45 ~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 45 MKGKALYNLERYEEAVDCYNYVINV----IEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHT----SCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHh----CcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 7888899999999999998887643 22211345666678899999 9999999998876443
No 190
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=86.79 E-value=2.5 Score=30.41 Aligned_cols=60 Identities=12% Similarity=0.070 Sum_probs=47.3
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
..++..+...|++++|...+...+.. ++. ..+.+.....++...|++.+|...+.++...
T Consensus 13 ~~la~~~~~~~~~~~A~~~~~~a~~~----~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 13 YNLGNAYYKQGDYDEAIEYYQKALEL----DPN--NAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 37889999999999999999887643 111 2345556678899999999999999988765
No 191
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=86.63 E-value=4.5 Score=30.07 Aligned_cols=59 Identities=12% Similarity=-0.039 Sum_probs=45.7
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|...+...+.. ++. ..+++.....++...|++.+|...+.++...
T Consensus 43 ~~a~~~~~~~~~~~A~~~~~~~~~~----~~~--~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 43 NRSAAYAKKGDYQKAYEDGCKTVDL----KPD--WGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHh----Ccc--cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 6788888999999999998887653 111 2345556677899999999999999887654
No 192
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=86.31 E-value=4 Score=30.88 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=46.2
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHH
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVD 411 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~ 411 (422)
...+++.+||+.+|++..-+-..|.+|...|.|...-+..+|-.....-.+. ..+.+..|...+..+++
T Consensus 28 ~~~~~~~ela~~l~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~--g~~~~~~~~~~~~~~~~ 96 (100)
T 1ub9_A 28 RRKAPFSQIQKVLDLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDF--GMEEAKRFLSSLKAVID 96 (100)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH--HHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHH--HHHHHHHHHHHHHHHHH
Confidence 3579999999999999999999999999999998766443332222221111 12344455555555443
No 193
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=86.02 E-value=2.6 Score=42.24 Aligned_cols=90 Identities=12% Similarity=0.036 Sum_probs=59.1
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
.+|..|...|++++|.+.+++.+.- ++. ....+.....++...|++.+|...+.++...... ++.. ...
T Consensus 45 ~lg~~~~~~g~~~~A~~~~~~al~l----~p~--~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~---~~~~--~~~ 113 (477)
T 1wao_1 45 NRSLAYLRTECYGYALGDATRAIEL----DKK--YIKGYYRRAASNMALGKFRAALRDYETVVKVKPH---DKDA--KMK 113 (477)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS----CTT--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT---CTTH--HHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---CHHH--HHH
Confidence 7889999999999999988887642 222 2345556688999999999999999998776322 2222 122
Q ss_pred HHHHHHhchhhcHHHHHHHHH
Q 014555 212 LQSGILHAEEKDYKTAYSYFF 232 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ 232 (422)
...+..+...++|.+|...|-
T Consensus 114 l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 114 YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 222222566788888887766
No 194
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=85.86 E-value=16 Score=38.17 Aligned_cols=183 Identities=9% Similarity=-0.025 Sum_probs=103.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
-..+|..+.+.|++++|.+.++..+.. ++. ..+.+.....++...|++.+|...+++|....... ..
T Consensus 436 ~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~-------~~ 502 (681)
T 2pzi_A 436 PLMEVRALLDLGDVAKATRKLDDLAER----VGW--RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGE-------LA 502 (681)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH----HCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC-------SH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhcc----Ccc--hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-------hH
Confidence 348899999999999999999888753 221 23455666778999999999999999987764221 12
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhcccccccccCcc-hHHHHH
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSKAGLQYVGPE-LDAMKA 288 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~~~~~~~~~~-i~~~~~ 288 (422)
....-|..+...++|.. ..+|-.+.+.- |....+...+..+-.-.+...+--..+..- .. .+|. ..++..
T Consensus 503 ~~~~lg~~~~~~g~~~~-~~~~~~al~~~-----P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a--l~-l~P~~~~a~~~ 573 (681)
T 2pzi_A 503 PKLALAATAELAGNTDE-HKFYQTVWSTN-----DGVISAAFGLARARSAEGDRVGAVRTLDEV--PP-TSRHFTTARLT 573 (681)
T ss_dssp HHHHHHHHHHHHTCCCT-TCHHHHHHHHC-----TTCHHHHHHHHHHHHHTTCHHHHHHHHHTS--CT-TSTTHHHHHHH
T ss_pred HHHHHHHHHHHcCChHH-HHHHHHHHHhC-----CchHHHHHHHHHHHHHcCCHHHHHHHHHhh--cc-cCcccHHHHHH
Confidence 23456777778888888 76776665421 222233222333332222222211112221 11 2344 345566
Q ss_pred HHHHHhcCC------HHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhh
Q 014555 289 VADAHSKRS------LKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLI 338 (422)
Q Consensus 289 L~~af~~~d------l~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~ 338 (422)
+..++..+. ...|.+.+..+...-..+|- ...+...+.+..+..+.
T Consensus 574 ~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~----~~~l~~~ll~~~l~~~~ 625 (681)
T 2pzi_A 574 SAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR----VLQIRALVLGGALDWLK 625 (681)
T ss_dssp HHHHTC-------CCHHHHHHHHHHHHTSCTTSTT----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH----HHHHHHHHHHHHHHHHH
Confidence 777764422 56777776665443333332 12344445554444443
No 195
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=85.30 E-value=8 Score=28.96 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP 244 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~ 244 (422)
+.+.....++...|++.+|...++++....... ......-|..+...++|..|...|-.+..-....++.
T Consensus 8 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~-------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 77 (100)
T 3ma5_A 8 FTRYALAQEHLKHDNASRALALFEELVETDPDY-------VGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ 77 (100)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC-------THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCch
Confidence 344556778999999999999999887763221 1234457888889999999999998887654433443
No 196
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=85.27 E-value=6.2 Score=30.00 Aligned_cols=39 Identities=13% Similarity=0.218 Sum_probs=35.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
...++..+||+.+|++..-|-+.|.+|...|.|...-|.
T Consensus 32 ~~~~s~~ela~~l~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 32 RGGMRVSEIARELDLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 456999999999999999999999999999999876654
No 197
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=85.03 E-value=4.4 Score=40.31 Aligned_cols=78 Identities=15% Similarity=0.105 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC--CCCch
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI--YVPPA 205 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i--~~~~~ 205 (422)
--.|+.+|...|+|++|..++++.+.-..+.. +-......+.....+|..+|++.+|..+|++|..+.... +.||.
T Consensus 343 ~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~ 422 (433)
T 3qww_A 343 MYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPY 422 (433)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH
T ss_pred HHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 44899999999999999999988754433321 122334445566789999999999999999998877654 24565
Q ss_pred hh
Q 014555 206 QQ 207 (422)
Q Consensus 206 i~ 207 (422)
+.
T Consensus 423 ~~ 424 (433)
T 3qww_A 423 IS 424 (433)
T ss_dssp HH
T ss_pred HH
Confidence 55
No 198
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=84.84 E-value=5.6 Score=33.03 Aligned_cols=99 Identities=12% Similarity=0.034 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHh
Q 014555 47 ELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLR 126 (422)
Q Consensus 47 ~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr 126 (422)
..++..++..+++.|++++-.+.+...... -|+. -..|.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~----------------------~P~~------------------~~~~~- 74 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY----------------------DFYN------------------VDYIM- 74 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------------CTTC------------------HHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----------------------CCCC------------------HHHHH-
Confidence 447778888888888888877666644321 2332 11222
Q ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 127 QRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 127 ~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
.|+..|...|+|++|++.+...+.- ++. ..+.+.....++...|++.+|...+.++..+.
T Consensus 75 -----~lg~~~~~~g~~~~Ai~~~~~al~l----~P~--~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 75 -----GLAAIYQIKEQFQQAADLYAVAFAL----GKN--DYTPVFHTGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp -----HHHHHHHHTTCHHHHHHHHHHHHHH----SSS--CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHccHHHHHHHHHHHHhh----CCC--CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 7888999999999999999887642 222 12345556779999999999999999987764
No 199
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=84.82 E-value=17 Score=35.92 Aligned_cols=79 Identities=14% Similarity=-0.038 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhc--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC--CCCch
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLD--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI--YVPPA 205 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i--~~~~~ 205 (422)
--.|+.+|...|+|++|..+..+.+.-..+.. +-......+.....+|..+|++.+|..+|.+|..+.... +.||.
T Consensus 332 ~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 332 LDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 34789999999999999999988754433322 122334445566789999999999999999998877654 24566
Q ss_pred hhH
Q 014555 206 QQG 208 (422)
Q Consensus 206 i~a 208 (422)
+..
T Consensus 412 ~~~ 414 (429)
T 3qwp_A 412 IED 414 (429)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 200
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=84.67 E-value=2.8 Score=34.67 Aligned_cols=61 Identities=11% Similarity=0.035 Sum_probs=49.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCcee--eeecCCCEEEEecCCchhhHHHHHHHHHH
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG--TLDQGVGCLIIFEDPKADAIYPATLETIS 404 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--kIDq~~g~v~~~~~~~~~~~~~~l~~~~~ 404 (422)
..-.+.+.||+.+|+++.+|.+.|.+++..|-|.= +.|..++....++-.+ .|+.+..+..
T Consensus 49 ~~~ps~~~LA~~~~~s~~~v~~~L~~L~~KGlI~i~~~~d~~g~~~~~ydL~p---L~ekL~~~~~ 111 (135)
T 2v79_A 49 SYFPTPNQLQEGMSISVEECTNRLRMFIQKGFLFIEECEDQNGIKFEKYSLQP---LWGKLYEYIQ 111 (135)
T ss_dssp CCSCCHHHHHTTSSSCHHHHHHHHHHHHHHTSCEEEEEECTTCCEEEEEECHH---HHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEecCCCceEEEeeHHH---HHHHHHHHHH
Confidence 45678999999999999999999999999999975 6677777777776554 6777766553
No 201
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=84.52 E-value=39 Score=35.49 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=109.8
Q ss_pred HHHHHHHHhcccHHHHHHHHHHHHHHHhhhc-------c---------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Q 014555 131 ARLAALLMESREYTEALTLLTSLVKEVRRLD-------D---------KLLLVDIDLLESKLHFSLRNLPKAKAALTAAR 194 (422)
Q Consensus 131 ~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~-------~---------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~ 194 (422)
+.+|.+.+..|++++|-+++...+..+.+.- + +.....+.+.-+++....++..+|+.++.+|.
T Consensus 382 l~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 382 FSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678888889999999998888876542110 0 00133466666777778899999999999997
Q ss_pred HhhccCCCCchhhHHHHHHHHHHhc-hhhcHHHHHHHHHHHhhhhhccCChhHHHHHHHHHHHHHHhcCccchhhhhccc
Q 014555 195 TAANAIYVPPAQQGTIDLQSGILHA-EEKDYKTAYSYFFEAFEAFNALEDPRAVFSLKYMLLCKIMVSQADDVAGIISSK 273 (422)
Q Consensus 195 ~~~~~i~~~~~i~a~i~~~~g~~~~-~~~dy~~A~~~f~ea~~~~~~~~~~~~~~~lky~vL~~lL~~~~~el~~ll~~~ 273 (422)
...... .+. +....+.+-. ..+++..|...|-.+.+.|.. ++... +.|+-+-.-+ +.......+|.+.
T Consensus 462 ~~~~~~--~~~----lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~--~~~~w--~~y~~fe~~~-~~~~~AR~lfera 530 (679)
T 4e6h_A 462 RLKKLV--TPD----IYLENAYIEYHISKDTKTACKVLELGLKYFAT--DGEYI--NKYLDFLIYV-NEESQVKSLFESS 530 (679)
T ss_dssp HTGGGS--CTH----HHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTT--CHHHH--HHHHHHHHHH-TCHHHHHHHHHHH
T ss_pred HhcCCC--ChH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC--chHHH--HHHHHHHHhC-CCHHHHHHHHHHH
Confidence 752111 222 2334444433 346689999999888887753 33322 2333221111 2222233455543
Q ss_pred ccccccCcchHHHHHHHHHH-----hcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchh
Q 014555 274 AGLQYVGPELDAMKAVADAH-----SKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAH 348 (422)
Q Consensus 274 ~~~~~~~~~i~~~~~L~~af-----~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~ 348 (422)
... .+.......|...| ..|++.....+.+.....+..|+-+. .++.-|+--++.-
T Consensus 531 l~~---~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~~~~~~----------------~f~~ry~~~~~~~ 591 (679)
T 4e6h_A 531 IDK---ISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPEVNKLE----------------EFTNKYKVLDVNY 591 (679)
T ss_dssp TTT---SSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTTCCHHH----------------HHHHHTCBTTBCH
T ss_pred HHh---cCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcHHH----------------HHHHHhcCCcchh
Confidence 221 12101112222222 45666666666666655565555322 2255577777777
Q ss_pred HHHH-hCCC
Q 014555 349 IAEL-IELP 356 (422)
Q Consensus 349 la~~-l~l~ 356 (422)
|.+. ||.-
T Consensus 592 i~~~~l~~~ 600 (679)
T 4e6h_A 592 LQRLELDYM 600 (679)
T ss_dssp HHHHTCTTC
T ss_pred HHHHHhhhc
Confidence 7665 6644
No 202
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=84.13 E-value=11 Score=28.63 Aligned_cols=70 Identities=14% Similarity=-0.043 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhccCCh
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNALEDP 244 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~~~~ 244 (422)
..+.....++...|++.+|...+.++..... .. ......-|..+...++|..|...|-.+.......++.
T Consensus 20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TY-SVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccH
Confidence 4555567889999999999999998876531 11 2233456888889999999999999887755544443
No 203
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=83.70 E-value=1.4 Score=41.91 Aligned_cols=152 Identities=13% Similarity=0.117 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhH
Q 014555 45 VKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTF 124 (422)
Q Consensus 45 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~ 124 (422)
..-..+..++..+++.|+|+.....+.......+ .... +. .. ...-+ ... .
T Consensus 177 ~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p---~~~~----------~~-~~---~~~~~----~~~--------~ 227 (338)
T 2if4_A 177 GAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMG---DDFM----------FQ-LY---GKYQD----MAL--------A 227 (338)
T ss_dssp HHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSC---HHHH----------HT-CC---HHHHH----HHH--------H
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc---cchh----------hh-hc---ccHHH----HHH--------H
Confidence 3445678889999999999998887776654332 1110 10 00 00001 111 1
Q ss_pred HhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCc
Q 014555 125 LRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPP 204 (422)
Q Consensus 125 lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~ 204 (422)
++..+-..++..|...|+|++|+..++..+.. ++. ....+.....++...|++.+|...+.++..+... ++
T Consensus 228 l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~----~p~--~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~---~~ 298 (338)
T 2if4_A 228 VKNPCHLNIAACLIKLKRYDEAIGHCNIVLTE----EEK--NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD---DK 298 (338)
T ss_dssp HHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CH
Confidence 11122448899999999999999999887642 222 2455666788999999999999999887554321 11
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
... .....+.....+.+..+...|..+|..
T Consensus 299 ~a~---~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 299 AIR---RELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp ---------------------------------
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 222 222222233345555566666666543
No 204
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=83.26 E-value=7.8 Score=27.52 Aligned_cols=65 Identities=14% Similarity=0.065 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 166 LVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 166 ~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
..+.+......+...+++.+|...+.++...... + ......-|..+...++|..|..+|-.+...
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~---~----~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN---N----AEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC---C----HHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4455666678899999999999999988765311 1 233445688888999999999999888764
No 205
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=82.80 E-value=2.6 Score=31.14 Aligned_cols=42 Identities=12% Similarity=0.027 Sum_probs=35.2
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
|+.++.....++..+||+.+|+|...|-+.|..|...|.|..
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~GlI~~ 46 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGMVQR 46 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE
Confidence 334443345699999999999999999999999999999974
No 206
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=81.95 E-value=6.8 Score=31.45 Aligned_cols=67 Identities=9% Similarity=0.201 Sum_probs=46.3
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecC--CCEEEEecCCchhhHH----HHHHHHHHHHHHHH
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQG--VGCLIIFEDPKADAIY----PATLETISNMGKVV 410 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~--~g~v~~~~~~~~~~~~----~~l~~~~~~l~~l~ 410 (422)
++..+||+.+|++..-|-+.|.+|...|.|.-.-+.. .|....+.+.+..+.+ +.+.+|.+.+...+
T Consensus 43 ~t~~eLa~~l~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~~y~~~~~~~~~~~i~~~~~~~~~~~~~~l 115 (123)
T 3r0a_A 43 IDTDALSKSLKLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVYIYKIYSKNQIRNIIQKIVQSWADRLGQEL 115 (123)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceEEEecCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999998754443 3334444443443333 33345555554443
No 207
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=81.80 E-value=2.4 Score=36.42 Aligned_cols=48 Identities=17% Similarity=0.326 Sum_probs=40.3
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....+++..+||+.+|+|...|-+.+.+|...|.|.+ .+|+.
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~I~~~~~~~d~~ 71 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGVIERYTIILGEQ 71 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecccCCHH
Confidence 3455555567899999999999999999999999999999964 56665
No 208
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=81.47 E-value=7.5 Score=35.63 Aligned_cols=94 Identities=20% Similarity=0.155 Sum_probs=64.3
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
...+|..+...|++++|...++..+.. ++. ..+.+....++++..|++.+|...+.++... +|.- ..
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~----~P~--~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~------~p~~-~~ 186 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQL----SNQ--NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ------DQDT-RY 186 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----TTS--CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG------GCSH-HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHh----CCc--chhHHHHHHHHHHHCCCHHHHHHHHHhCchh------hcch-HH
Confidence 348899999999999999999988653 222 2345566678999999999999888765333 1211 12
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
.....|..+...+++..|...|-.+..
T Consensus 187 ~~~~~~~~l~~~~~~~~a~~~l~~al~ 213 (287)
T 3qou_A 187 QGLVAQIELLXQAADTPEIQQLQQQVA 213 (287)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccCccHHHHHHHHh
Confidence 233455556666777777777766654
No 209
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=81.06 E-value=9 Score=29.74 Aligned_cols=37 Identities=8% Similarity=0.048 Sum_probs=33.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
..++..+||+.+|++..-+-+.|..|...|.|...-+
T Consensus 33 ~~~~~~ela~~l~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 33 ADQSASSLATRLPVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp SCBCHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeEEec
Confidence 4589999999999999999999999999999987655
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=80.42 E-value=8.2 Score=28.26 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=45.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
.....++..|++.+|...+.++.... |.-.......-|..+...++|..|...|-.+....
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 45678889999999999999886652 11111145567888889999999999999887643
No 211
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=80.28 E-value=91 Score=35.96 Aligned_cols=200 Identities=15% Similarity=0.092 Sum_probs=101.7
Q ss_pred HHHHhhcC-ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHH-----
Q 014555 13 IAQAKEAS-NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTA----- 86 (422)
Q Consensus 13 ~ak~~~~~-~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~----- 86 (422)
-|++..+. ..++||+.|.+ . .+ ..++.+++..+.+.|+|+++.+++..-++..+. +...+.
T Consensus 1111 LAKAql~~G~~kEAIdsYiK---A--dD-------~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~LafaY 1177 (1630)
T 1xi4_A 1111 LAKAQLQKGMVKEAIDSYIK---A--DD-------PSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIFAL 1177 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHh---c--CC-------hHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHHHH
Confidence 35555444 47899999854 1 11 235667899999999999999999876654321 110110
Q ss_pred ---HHHHHHHHHhhcCCCChhHHHHHHHHHHHHH--HhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHH-Hhh-
Q 014555 87 ---KIVRGIIDAVAKIPGTSELQIALCKEMVQWT--RAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKE-VRR- 159 (422)
Q Consensus 87 ---k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~--~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e-~~~- 159 (422)
.-+..+-+++. .++..+.. .+=+.+.+.- ...+..|-++.--.+|+..|...|++++|.+...+-... +-+
T Consensus 1178 AKl~rleele~fI~-~~n~ad~~-~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWke 1255 (1630)
T 1xi4_A 1178 AKTNRLAELEEFIN-GPNNAHIQ-QVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKE 1255 (1630)
T ss_pred HhhcCHHHHHHHHh-CCCHHHHH-HHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHH
Confidence 12233333432 23211111 1111111100 012344445555668888999999999988777544110 000
Q ss_pred -----hccc--------h----hHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhc-hh
Q 014555 160 -----LDDK--------L----LLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHA-EE 221 (422)
Q Consensus 160 -----~~~~--------~----~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~-~~ 221 (422)
.+.+ . .--+.+-..+++|...|.+..|-.+++.+..+ ++.-++.+.+.+-.+.. ..
T Consensus 1256 v~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L------eraH~gmftELaiLyaKy~p 1329 (1630)
T 1xi4_A 1256 VCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL------ERAHMGMFTELAILYSKFKP 1329 (1630)
T ss_pred HHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc------ChhHhHHHHHHHHHHHhCCH
Confidence 0000 0 01123335566788888998888888776443 22333333333333322 23
Q ss_pred hcHHHHHHHHHH
Q 014555 222 KDYKTAYSYFFE 233 (422)
Q Consensus 222 ~dy~~A~~~f~e 233 (422)
++..++.++|..
T Consensus 1330 eklmEhlk~f~~ 1341 (1630)
T 1xi4_A 1330 QKMREHLELFWS 1341 (1630)
T ss_pred HHHHHHHHHHHH
Confidence 444455554443
No 212
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=80.21 E-value=6.1 Score=29.77 Aligned_cols=45 Identities=9% Similarity=0.128 Sum_probs=37.2
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecC
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQG 380 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~ 380 (422)
.++.....++..+||+.+|++..-+-+.|..|...|.|...-|..
T Consensus 31 ~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~glv~~~~~~r 75 (99)
T 3cuo_A 31 CMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGLIDSQRDAQ 75 (99)
T ss_dssp HHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSS
T ss_pred HHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCC
Confidence 333344579999999999999999999999999999998765533
No 213
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=80.14 E-value=8 Score=32.17 Aligned_cols=94 Identities=15% Similarity=0.115 Sum_probs=47.3
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH-hhCCHHHHHHHHHHHHHhhccCCCCchhhHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHF-SLRNLPKAKAALTAARTAANAIYVPPAQQGTI 210 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~-~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i 210 (422)
.++.++...|++++|...+..++.. ++ .. .+......+.+ ..++...+...+.++.... |.- ...
T Consensus 45 ~la~~~~~~g~~~~A~~~~~~a~~~----~p-~~--~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~------P~~-~~~ 110 (176)
T 2r5s_A 45 AKADCLLETKQFELAQELLATIPLE----YQ-DN--SYKSLIAKLELHQQAAESPELKRLEQELAAN------PDN-FEL 110 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTCCGG----GC-CH--HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHS------TTC-HHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHhhhc----cC-Ch--HHHHHHHHHHHHhhcccchHHHHHHHHHHhC------CCC-HHH
Confidence 6777777888888887777665321 11 11 11111111111 1122223445555554431 111 122
Q ss_pred HHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 211 DLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 211 ~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...-|..+...|+|..|...|-.+.....
T Consensus 111 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p 139 (176)
T 2r5s_A 111 ACELAVQYNQVGRDEEALELLWNILKVNL 139 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHhCc
Confidence 33456666777788888777777765544
No 214
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=79.63 E-value=12 Score=28.45 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=37.3
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCC
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGV 381 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~ 381 (422)
..+......++..+||+.+|++..-|-+.|..|...|.|...-+..+
T Consensus 28 ~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 28 LKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred HHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 33343356799999999999999999999999999999987666444
No 215
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=79.60 E-value=50 Score=33.12 Aligned_cols=165 Identities=9% Similarity=0.023 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCC--------hhHHHHHHHHHHHHHHh-
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGT--------SELQIALCKEMVQWTRA- 119 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~--------~~~~~~l~~~~i~~~~~- 119 (422)
.+..++..|++.|++++..+++..+... + +..+.. .-+.+|..+...... .+.-.+++++....--.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~-G-v~pd~~--tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~P 103 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN-G-VQLSQY--HYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVP 103 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH-T-CCCCHH--HHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc-C-CCCCHh--HHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCC
Confidence 4567789999999999999999988752 3 322222 245666666543211 01124445444331000
Q ss_pred cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhcc
Q 014555 120 EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANA 199 (422)
Q Consensus 120 ~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~ 199 (422)
+-.+| ..|...|...|++++|.+++.++... +..+ -+..|-.-+..|...|++.+|..++..-... .
T Consensus 104 d~~ty------n~lI~~~~~~g~~~~A~~l~~~M~~~--g~~P---d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~--G 170 (501)
T 4g26_A 104 NEATF------TNGARLAVAKDDPEMAFDMVKQMKAF--GIQP---RLRSYGPALFGFCRKGDADKAYEVDAHMVES--E 170 (501)
T ss_dssp CHHHH------HHHHHHHHHHTCHHHHHHHHHHHHHT--TCCC---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--T
T ss_pred CHHHH------HHHHHHHHhcCCHHHHHHHHHHHHHc--CCCC---ccceehHHHHHHHHCCCHHHHHHHHHHHHhc--C
Confidence 11112 26788899999999999999887643 1111 1233444466888999999999998765432 3
Q ss_pred CCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHH
Q 014555 200 IYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEA 234 (422)
Q Consensus 200 i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea 234 (422)
+. |.... +..--..+...|++.+|...|-+-
T Consensus 171 ~~--Pd~~t--y~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 171 VV--PEEPE--LAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp CC--CCHHH--HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CC--CCHHH--HHHHHHHHhhCCCHHHHHHHHHHH
Confidence 32 22211 111111234678899998777653
No 216
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=79.56 E-value=6.4 Score=31.24 Aligned_cols=65 Identities=8% Similarity=0.061 Sum_probs=47.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhHHHHHHHHHHHHHHHHH
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAIYPATLETISNMGKVVD 411 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~~~~l~~~~~~l~~l~~ 411 (422)
..++..+||+.+|++..-|-+.|..|...|.|...-+.......+. ++ ....+.+|...+....+
T Consensus 30 ~~~~~~eLa~~l~is~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~--~~---~~~~l~~~~~~~~~~~~ 94 (118)
T 3f6o_A 30 GPATVSELAKPFDMALPSFMKHIHFLEDSGWIRTHKQGRVRTCAIE--KE---PFTAVEAWLAEQQELWE 94 (118)
T ss_dssp CCEEHHHHHTTCCSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEC--SH---HHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEEecCCEEEEEEC--HH---HHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999988776322222222 21 34556677776655544
No 217
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=78.73 E-value=17 Score=26.69 Aligned_cols=66 Identities=9% Similarity=-0.031 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhc
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~ 240 (422)
+.+......+...|++.+|...+.++...... + ......-|..+...++|..|...|-.+......
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~---~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 70 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ---N----PVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST 70 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT---C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---C----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 44556677889999999999999988776311 1 233456788888999999999999998765443
No 218
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=78.52 E-value=52 Score=32.15 Aligned_cols=90 Identities=18% Similarity=0.186 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcc---cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhhccCCC
Q 014555 130 EARLAALLMESR---EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS----LRNLPKAKAALTAARTAANAIYV 202 (422)
Q Consensus 130 ~~~La~~~~~~g---~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~----~~n~~kak~~l~~a~~~~~~i~~ 202 (422)
...|+.+|...| ++++|.+.+...... . ..+.+..-..+|.. .+|+.+|...+.+|....
T Consensus 331 ~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~----- 397 (490)
T 2xm6_A 331 QANLGAIYFRLGSEEEHKKAVEWFRKAAAK----G----EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG----- 397 (490)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred HHHHHHHHHhCCCcccHHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC-----
Confidence 346666766644 677777766665432 1 12333333456666 678888877777765431
Q ss_pred CchhhHHHHHHHHHHhch----hhcHHHHHHHHHHHhh
Q 014555 203 PPAQQGTIDLQSGILHAE----EKDYKTAYSYFFEAFE 236 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~~~----~~dy~~A~~~f~ea~~ 236 (422)
+|.. ...-|.++.. .+|+..|..+|-.+..
T Consensus 398 ~~~a----~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 431 (490)
T 2xm6_A 398 LSAA----QVQLGEIYYYGLGVERDYVQAWAWFDTAST 431 (490)
T ss_dssp CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred CHHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 2221 1223444444 6788888777777765
No 219
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=78.27 E-value=6.9 Score=30.64 Aligned_cols=59 Identities=20% Similarity=0.051 Sum_probs=44.5
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.++.++...|++++|+..+...+.- ++. ..+.+.....++...|++.+|...+.++...
T Consensus 56 ~lg~~~~~~g~~~~A~~~~~~al~l----~P~--~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 56 SLGLTQAENEKDGLAIIALNHARML----DPK--DIAVHAALAVSHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH----CTT--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh----CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 7888899999999999988887642 222 2345555677888999999999998877543
No 220
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=78.10 E-value=1.5 Score=34.54 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=46.3
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee-e-ecCCCEEEE
Q 014555 315 DPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT-L-DQGVGCLII 386 (422)
Q Consensus 315 D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk-I-Dq~~g~v~~ 386 (422)
+|.+.+.+..+....+...+..+..+=..++...||+.+|+|...|-+.+..|...|.+... . |+..|....
T Consensus 5 ~~~~~~~~~~~~~~~~l~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 5 EDLFINLAKSLLGDDVIDVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp TTHHHHHHHTTSCSTTHHHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHHHcChHHHHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 34433333333333333334444455556999999999999999999999999999999764 2 244554443
No 221
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=77.89 E-value=31 Score=31.27 Aligned_cols=97 Identities=14% Similarity=0.104 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhh
Q 014555 48 LAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQ 127 (422)
Q Consensus 48 ~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~ 127 (422)
.++..++..++..|+++...+.+.......+.-+.... .+-..+....+ .+.-++.++..++. .....+.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-----~la~~~~~~~~-~~~A~~~~~~al~~----~p~~~~~ 74 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYT-----NRALCYLKMQQ-PEQALADCRRALEL----DGQSVKA 74 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHH-----HHHHHHHHTTC-HHHHHHHHHHHTTS----CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHH-----HHHHHHHHhcC-HHHHHHHHHHHHHh----CCCCHHH
Confidence 46778899999999999999888877765443222111 11111111211 12223333333332 1112222
Q ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHH
Q 014555 128 RVEARLAALLMESREYTEALTLLTSLVKE 156 (422)
Q Consensus 128 ~l~~~La~~~~~~g~~~~A~~~l~~l~~e 156 (422)
-..+|..|...|++++|...+...+.-
T Consensus 75 --~~~lg~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 75 --HFFLGQCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp --HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 348899999999999999999887654
No 222
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=77.88 E-value=55 Score=32.01 Aligned_cols=176 Identities=10% Similarity=0.017 Sum_probs=93.6
Q ss_pred CChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHH----cccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHH
Q 014555 20 SNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQ----ENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDA 95 (422)
Q Consensus 20 ~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~ 95 (422)
.|++.|++.|....+... -.+...++.++.. .++++.-.+.+...... + -..+. ..+=..
T Consensus 57 ~~~~~A~~~~~~a~~~~~---------~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~---~~Lg~~ 120 (490)
T 2xm6_A 57 KDLTQAMDWFRRAAEQGY---------TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQAQ---QNLGVM 120 (490)
T ss_dssp CCHHHHHHHHHHHHHTTC---------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHH---HHHHHH
T ss_pred cCHHHHHHHHHHHHHCCC---------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHH---HHHHHH
Confidence 456677777766554311 2366788899988 88888888777765532 1 11111 111111
Q ss_pred hhc---CCCChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhccchhHHH
Q 014555 96 VAK---IPGTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLME----SREYTEALTLLTSLVKEVRRLDDKLLLVD 168 (422)
Q Consensus 96 ~~~---~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~----~g~~~~A~~~l~~l~~e~~~~~~~~~~~e 168 (422)
+.. .+...+.-++.++...+ .+. ..+ ...|+.+|.. .+++++|.+.+...... .+ .+
T Consensus 121 y~~g~g~~~~~~~A~~~~~~a~~----~~~--~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~~----~~ 184 (490)
T 2xm6_A 121 YHEGNGVKVDKAESVKWFRLAAE----QGR--DSG--QQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----GN----VW 184 (490)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHH----TTC--HHH--HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHH----CCC--HHH--HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HH
Confidence 211 12212222333333222 121 122 4478888887 77888888888776532 11 22
Q ss_pred HHHHHHHHHHh----hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch----hhcHHHHHHHHHHHhh
Q 014555 169 IDLLESKLHFS----LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE----EKDYKTAYSYFFEAFE 236 (422)
Q Consensus 169 ~~l~~~~~~~~----~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~----~~dy~~A~~~f~ea~~ 236 (422)
.+..-..+|.. .+|+.+|...+.++.... +|.. ...-|.++.. .+|+..|..+|-.+.+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~-----~~~a----~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~ 251 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG-----DELG----QLHLADMYYFGIGVTQDYTQSRVLFSQSAE 251 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----CHHH----HHHHHHHHHHTSSSCCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC-----CHHH----HHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 33333445555 678888888887765431 2111 1123333432 6777777777776654
No 223
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=77.21 E-value=11 Score=29.33 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=39.0
Q ss_pred cccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 341 YSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 341 Ys~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
...+++.+|++.+ |++..-+-..|.+|...|.|..+.|..++-
T Consensus 25 ~~~~~~~eLa~~l~~is~~tls~~L~~Le~~GlI~r~~~~~d~r 68 (107)
T 2hzt_A 25 HGKKRTSELKRLMPNITQKMLTQQLRELEADGVINRIVYNQVPP 68 (107)
T ss_dssp TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSC
T ss_pred hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEEeecCCCCC
Confidence 4678999999999 999999999999999999999988876653
No 224
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=77.17 E-value=16 Score=27.79 Aligned_cols=69 Identities=7% Similarity=-0.047 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 168 DIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 168 e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+-++...+.++..+++.+|..-+..|......-..+......+...-|..+...|+|..|..++-++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 345567789999999999999999987664322111233456677788888899999999998888864
No 225
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=76.94 E-value=3.4 Score=34.45 Aligned_cols=48 Identities=10% Similarity=0.196 Sum_probs=41.1
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....++++.+||+.+|+|...+-+.+.+|...|.|.+ .+|+.
T Consensus 12 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 62 (152)
T 2cg4_A 12 GILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGIITGARIDVSPK 62 (152)
T ss_dssp HHHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTSEEEEEEEECTT
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCCcceEEEecCHH
Confidence 4555556668999999999999999999999999999999975 67765
No 226
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=76.81 E-value=2.9 Score=31.50 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=34.3
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
+.+++... ++..+||+.||++...|-+.|-+|-.+|.|..
T Consensus 23 L~lL~~~g-~sa~eLAk~LgiSk~aVr~~L~~Le~eG~I~~ 62 (82)
T 1oyi_A 23 IKTIGIEG-ATAAQLTRQLNMEKREVNKALYDLQRSAMVYS 62 (82)
T ss_dssp HHHHSSST-EEHHHHHHHSSSCHHHHHHHHHHHHHHTSSEE
T ss_pred HHHHHHcC-CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 34444433 99999999999999999999999999999865
No 227
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=76.69 E-value=11 Score=28.52 Aligned_cols=38 Identities=8% Similarity=0.182 Sum_probs=34.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
..++..+||+.+|++..-+-+.|..|...|.|...-+.
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g 72 (98)
T 3jth_A 35 QELSVGELCAKLQLSQSALSQHLAWLRRDGLVTTRKEA 72 (98)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 68999999999999999999999999999999876443
No 228
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=76.56 E-value=3.1 Score=35.30 Aligned_cols=50 Identities=18% Similarity=0.302 Sum_probs=43.4
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce---eeeecC
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA---GTLDQG 380 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~---gkIDq~ 380 (422)
.+.|+.+++.-.++++.+||+.+|+|+..+-+.+-+|...|.|. +.+|+.
T Consensus 5 d~~il~~L~~~~~~s~~~la~~lg~s~~tv~~rl~~L~~~g~i~~~~a~~~~~ 57 (162)
T 3i4p_A 5 DRKILRILQEDSTLAVADLAKKVGLSTTPCWRRIQKMEEDGVIRRRVALLDPV 57 (162)
T ss_dssp HHHHHHHHTTCSCSCHHHHHHHHTCCHHHHHHHHHHHHHTTSSCCCCCCCCTT
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeeeceeeeCHH
Confidence 35677777777899999999999999999999999999999986 467764
No 229
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=76.20 E-value=3.6 Score=33.98 Aligned_cols=48 Identities=19% Similarity=0.224 Sum_probs=40.8
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....+++..+||+.+|+|...+-+.+.+|...|.|.+ .+|+.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 59 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQK 59 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEecccChh
Confidence 4555666668899999999999999999999999999999974 46654
No 230
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=75.85 E-value=3 Score=34.65 Aligned_cols=48 Identities=10% Similarity=0.247 Sum_probs=40.5
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....+++..+||+.+|+|...+-+.+.+|...|.|.+ .+|..
T Consensus 13 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~~~~ 63 (151)
T 2dbb_A 13 QLVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGIIRKFTIIPDID 63 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEecCChH
Confidence 4555566668999999999999999999999999999999964 46654
No 231
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=75.33 E-value=17 Score=29.01 Aligned_cols=44 Identities=9% Similarity=-0.095 Sum_probs=39.0
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
...++..+||+.+|++..-+-..|.+|...|-|.-..|..++-.
T Consensus 48 ~~~~t~~ela~~l~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~ 91 (142)
T 2fbi_A 48 QGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRR 91 (142)
T ss_dssp HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCCCe
Confidence 45699999999999999999999999999999998887766643
No 232
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=75.24 E-value=3.7 Score=34.61 Aligned_cols=48 Identities=13% Similarity=0.174 Sum_probs=40.3
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+.++....+++..+||+.+|+|...+-+.+.+|...|.|.+ .+|+.
T Consensus 14 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 64 (162)
T 2p5v_A 14 KILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPE 64 (162)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEeeecccCChH
Confidence 4555566667899999999999999999999999999999974 56653
No 233
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=75.20 E-value=8.1 Score=30.13 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=33.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
..+++.+||+.+|++..-|-+.|..|...|.|...-|
T Consensus 37 ~~~s~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 73 (108)
T 2kko_A 37 GERAVEAIATATGMNLTTASANLQALKSGGLVEARRE 73 (108)
T ss_dssp CCEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 5689999999999999999999999999999987654
No 234
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=73.45 E-value=43 Score=28.67 Aligned_cols=187 Identities=13% Similarity=0.046 Sum_probs=106.8
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhc--CC
Q 014555 23 SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAK--IP 100 (422)
Q Consensus 23 ~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~--~~ 100 (422)
++|++.|..-.+... -.+...++.++...++++.-.+.+...... + -+. ....+=..+.. .+
T Consensus 3 ~eA~~~~~~aa~~g~---------~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g-~~~-----a~~~lg~~y~~~g~~ 66 (212)
T 3rjv_A 3 TEPGSQYQQQAEAGD---------RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G-DGD-----ALALLAQLKIRNPQQ 66 (212)
T ss_dssp -CTTHHHHHHHHTTC---------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T-CHH-----HHHHHHHHTTSSTTS
T ss_pred chHHHHHHHHHHCCC---------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C-CHH-----HHHHHHHHHHcCCCC
Confidence 456666666554311 237778999999999999988888766542 1 111 11222222222 11
Q ss_pred CChhHHHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 101 GTSELQIALCKEMVQWTRAEKRTFLRQRVEARLAALLME----SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~----~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
...+.-++.++...+ .+ ...+ ...|+.+|.. .+++.+|.+.+...... .+.....+.+..-..+
T Consensus 67 ~~~~~A~~~~~~A~~----~g--~~~a--~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~----~~~~~~~~a~~~Lg~~ 134 (212)
T 3rjv_A 67 ADYPQARQLAEKAVE----AG--SKSG--EIVLARVLVNRQAGATDVAHAITLLQDAARD----SESDAAVDAQMLLGLI 134 (212)
T ss_dssp CCHHHHHHHHHHHHH----TT--CHHH--HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS----TTSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----CC--CHHH--HHHHHHHHHcCCCCccCHHHHHHHHHHHHHc----CCCcchHHHHHHHHHH
Confidence 112222444443322 11 1122 4588999988 78999999988875421 1111224445555667
Q ss_pred HHh----hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhc------hhhcHHHHHHHHHHHhhhhhccCChhH
Q 014555 177 HFS----LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHA------EEKDYKTAYSYFFEAFEAFNALEDPRA 246 (422)
Q Consensus 177 ~~~----~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~------~~~dy~~A~~~f~ea~~~~~~~~~~~~ 246 (422)
|.. .+|+.+|...+.+|-.... +|. +. . .-|.+|. ..+|+..|..+|-.+.+ .+++.+
T Consensus 135 y~~g~g~~~d~~~A~~~~~~A~~~~~----~~~--a~-~-~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~----~g~~~A 202 (212)
T 3rjv_A 135 YASGVHGPEDDVKASEYFKGSSSLSR----TGY--AE-Y-WAGMMFQQGEKGFIEPNKQKALHWLNVSCL----EGFDTG 202 (212)
T ss_dssp HHHTSSSSCCHHHHHHHHHHHHHTSC----TTH--HH-H-HHHHHHHHCBTTTBCCCHHHHHHHHHHHHH----HTCHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHcCC----CHH--HH-H-HHHHHHHcCCCCCCCCCHHHHHHHHHHHHH----cCCHHH
Confidence 777 7899999999998865511 222 21 2 2344443 23499999999988875 355554
Q ss_pred HHH
Q 014555 247 VFS 249 (422)
Q Consensus 247 ~~~ 249 (422)
...
T Consensus 203 ~~~ 205 (212)
T 3rjv_A 203 CEE 205 (212)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 235
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=73.12 E-value=21 Score=28.56 Aligned_cols=41 Identities=15% Similarity=0.106 Sum_probs=37.8
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
..++..+||+.+|+|..-+-..|.+|...|-|.-.-|..++
T Consensus 40 ~~~t~~ela~~l~~~~stvs~~l~~L~~~G~v~r~~~~~d~ 80 (152)
T 1ku9_A 40 KPLTISDIMEELKISKGNVSMSLKKLEELGFVRKVWIKGER 80 (152)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCTTCS
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCc
Confidence 57999999999999999999999999999999988777665
No 236
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=72.70 E-value=3.9 Score=35.12 Aligned_cols=47 Identities=6% Similarity=0.261 Sum_probs=39.8
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
.|+..+....++++.+||+.+|+|...+-+.+.+|...|.|.+ .+|+
T Consensus 31 ~IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 31 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 4555555567999999999999999999999999999999964 5665
No 237
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=72.38 E-value=15 Score=31.74 Aligned_cols=89 Identities=19% Similarity=0.201 Sum_probs=60.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhC----CHHHHHHHHHHHHHhhccCCCCch
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLR----NLPKAKAALTAARTAANAIYVPPA 205 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~----n~~kak~~l~~a~~~~~~i~~~~~ 205 (422)
...|+.+|...+++++|.+.+...... .+ .+.+..-..+|.. + |+.+|...+.+|.... +|.
T Consensus 21 ~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~----~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g-----~~~ 86 (212)
T 3rjv_A 21 QYYLADTWVSSGDYQKAEYWAQKAAAQ----GD----GDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG-----SKS 86 (212)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHT----TC----HHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT-----CHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC-----CHH
Confidence 448999999999999999999886531 11 2223333445665 6 9999999999884321 222
Q ss_pred hhHHHHHHHHHHhch----hhcHHHHHHHHHHHhh
Q 014555 206 QQGTIDLQSGILHAE----EKDYKTAYSYFFEAFE 236 (422)
Q Consensus 206 i~a~i~~~~g~~~~~----~~dy~~A~~~f~ea~~ 236 (422)
+. ..-|.++.. .+|+..|..+|-.+.+
T Consensus 87 --a~--~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 87 --GE--IVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp --HH--HHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred --HH--HHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 11 224555554 7899999999998875
No 238
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=72.15 E-value=5.3 Score=33.13 Aligned_cols=48 Identities=15% Similarity=0.262 Sum_probs=39.6
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....++++.+||+.+|++...+-+.+.+|...|.|.+ .+|+.
T Consensus 11 ~iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 11 ILVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 3444555567899999999999999999999999999999964 45654
No 239
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=71.50 E-value=17 Score=27.46 Aligned_cols=52 Identities=8% Similarity=0.045 Sum_probs=42.2
Q ss_pred hhcccccccchhH----HHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 337 LIEPYSRVEIAHI----AELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 337 i~~pYs~I~l~~l----a~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.+.....++..+| |+.+|++..-+-..|.+|...|-|.-..|.....+.+++
T Consensus 16 ~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~ 71 (99)
T 1tbx_A 16 YLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGFVKERQERGEKRLYLTE 71 (99)
T ss_dssp HHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred HHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCEEEEecCCceEEEECH
Confidence 3333467889999 899999999999999999999999888887555555544
No 240
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=71.47 E-value=19 Score=28.53 Aligned_cols=43 Identities=7% Similarity=0.068 Sum_probs=38.5
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
...++..+||+.+|++..-+-..|.+|...|-|.-..|..++-
T Consensus 50 ~~~~t~~ela~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R 92 (140)
T 2nnn_A 50 TGPCPQNQLGRLTAMDAATIKGVVERLDKRGLIQRSADPDDGR 92 (140)
T ss_dssp HSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTCEEEEEETTEEE
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCC
Confidence 3479999999999999999999999999999999887776664
No 241
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=71.00 E-value=18 Score=28.65 Aligned_cols=43 Identities=2% Similarity=0.081 Sum_probs=38.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
...++..+||+.+|++..-+-..+.+|...|-|.-..|..++-
T Consensus 46 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~R 88 (138)
T 1jgs_A 46 AACITPVELKKVLSVDLGALTRMLDRLVCKGWVERLPNPNDKR 88 (138)
T ss_dssp HSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECTTCSS
T ss_pred cCCCCHHHHHHHHCCChHHHHHHHHHHHHCCCEEecCCcccCc
Confidence 4568999999999999999999999999999999888776663
No 242
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=70.95 E-value=37 Score=31.49 Aligned_cols=99 Identities=14% Similarity=0.072 Sum_probs=71.9
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
-++.++.+.|+|++|+..++... ...++...-++++.-...+-.+|++.+|...|+++..- +.+|.......
T Consensus 140 ~~a~l~~~~~r~~dA~~~l~~a~----~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g----~~~P~~~~da~ 211 (282)
T 4f3v_A 140 MKAVVYGAAERWTDVIDQVKSAG----KWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS----PAGEACARAIA 211 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHTTGG----GCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS----TTTTTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHhh----ccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC----CCCccccHHHH
Confidence 66678999999999998886432 11123223456666677889999999999999977521 21244444455
Q ss_pred HHHHHHhchhhcHHHHHHHHHHHhhhh
Q 014555 212 LQSGILHAEEKDYKTAYSYFFEAFEAF 238 (422)
Q Consensus 212 ~~~g~~~~~~~dy~~A~~~f~ea~~~~ 238 (422)
.+.|..+...|+..+|...|-.+....
T Consensus 212 ~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 212 WYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 678999999999999999998887643
No 243
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=70.78 E-value=24 Score=28.20 Aligned_cols=44 Identities=11% Similarity=0.043 Sum_probs=39.2
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
...++..+||+.+|++..-+-..+.+|...|-|.-.-|..++-.
T Consensus 45 ~~~~~~~~la~~l~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~ 88 (145)
T 2a61_A 45 EGPKRPGELSVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRA 88 (145)
T ss_dssp HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCCce
Confidence 45799999999999999999999999999999998887776643
No 244
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=70.71 E-value=13 Score=29.22 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=51.8
Q ss_pred HHHHHHHhhcccccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCc-hhhHHHHHHHHHHHHH
Q 014555 330 LEQNLCRLIEPYSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPK-ADAIYPATLETISNMG 407 (422)
Q Consensus 330 ~~~~l~~i~~pYs~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~-~~~~~~~l~~~~~~l~ 407 (422)
+...|..+..--.++++.+|++.+ |++..-+-+.|..|-..|.|.-+.+ ......+++.-. .......+.+|+..++
T Consensus 29 rl~IL~~L~~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~-r~~~y~LT~~G~~l~~~l~~l~~w~~~~~ 107 (111)
T 3df8_A 29 TMLIISVLGNGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGLVERRSG-QITTYALTEKGMNVRNSLMPLLQYISVLD 107 (111)
T ss_dssp HHHHHHHHTSSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTSEEEEES-SSEEEEECHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCCEEEeec-CcEEEEECccHHHHHHHHHHHHHHHHHhc
Confidence 333344443322346699999999 9999999999999999999998888 444444443221 1123455667777654
No 245
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.48 E-value=4.3 Score=33.76 Aligned_cols=47 Identities=6% Similarity=0.261 Sum_probs=39.4
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeec
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQ 379 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq 379 (422)
.|+..+....++++.+||+.+|+|...+-+.+.+|...|.|.+ .+|+
T Consensus 11 ~il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 11 KIIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 3455555567899999999999999999999999999999864 5665
No 246
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=70.48 E-value=4.7 Score=33.48 Aligned_cols=56 Identities=11% Similarity=-0.012 Sum_probs=42.2
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.+.+.-+...+.. +.++||+.+++|+..+++.+.+|...|.|...=. ..|+.-..+
T Consensus 12 l~~L~~La~~~~~-s~~~IA~~~~i~~~~l~kIl~~L~~aGlv~s~rG-~GGy~Lar~ 67 (145)
T 1xd7_A 12 IHILSLISMDEKT-SSEIIADSVNTNPVVVRRMISLLKKADILTSRAG-VPGASLKKD 67 (145)
T ss_dssp HHHHHHHHTCSCC-CHHHHHHHHTSCHHHHHHHHHHHHHTTSEECCSS-SSSCEESSC
T ss_pred HHHHHHHHhCCCC-CHHHHHHHHCcCHHHHHHHHHHHHHCCceEeecC-CCCceecCC
Confidence 3455555544445 9999999999999999999999999999987655 445544333
No 247
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=70.29 E-value=23 Score=31.93 Aligned_cols=46 Identities=15% Similarity=0.157 Sum_probs=38.9
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.+-..+...||+.+|+|+.+|+..|.+|...|-+. -..+|.|.+.+
T Consensus 175 ~~~~~t~~~la~~~~l~~~~V~~~l~~L~~~~~v~---~~~~~~~~~~~ 220 (232)
T 2qlz_A 175 LNGRATVEELSDRLNLKEREVREKISEMARFVPVK---IINDNTVVLDE 220 (232)
T ss_dssp HSSEEEHHHHHHHHTCCHHHHHHHHHHHTTTSCEE---EETTTEEEECH
T ss_pred hcCCCCHHHHHHHhCcCHHHHHHHHHHHHhcCCeE---EecCCeEEecH
Confidence 45789999999999999999999999999999887 33567777643
No 248
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=70.25 E-value=5.3 Score=33.06 Aligned_cols=48 Identities=13% Similarity=0.324 Sum_probs=40.8
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee---eeecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG---TLDQG 380 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g---kIDq~ 380 (422)
.|+..+....+++..+||+.+|+|...+-+.+.+|...|.|.+ .+|..
T Consensus 7 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 57 (150)
T 2pn6_A 7 RILKILQYNAKYSLDEIAREIRIPKATLSYRIKKLEKDGVIKGYYAYINPA 57 (150)
T ss_dssp HHHHHHTTCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSSCCCCCCCCGG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEEEeecCHH
Confidence 4555666667899999999999999999999999999999975 57753
No 249
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=69.91 E-value=29 Score=26.25 Aligned_cols=46 Identities=4% Similarity=-0.001 Sum_probs=37.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
...++.+||+.+|++..-+-+.|..|...|.|..+-+.......++
T Consensus 35 ~~~~~~ela~~l~is~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~ 80 (102)
T 3pqk_A 35 GEFSVGELEQQIGIGQPTLSQQLGVLRESGIVETRRNIKQIFYRLT 80 (102)
T ss_dssp CCBCHHHHHHHHTCCTTHHHHHHHHHHHTTSEEEECSSSCCEEEEC
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEeCCEEEEEEC
Confidence 4589999999999999999999999999999987655444344443
No 250
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=69.78 E-value=32 Score=27.73 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
..+++.|+..-+..-+.|=.++ +-..||+.||+|..-|-+-+..|..+|.|..+ +..|+.+...
T Consensus 17 ~QI~~~i~~~I~~G~l~pG~~LPser~La~~~gVSr~tVReAl~~L~~eGlv~~~--~g~G~~V~~~ 81 (134)
T 4ham_A 17 EQIVQKIKEQVVKGVLQEGEKILSIREFASRIGVNPNTVSKAYQELERQEVIITV--KGKGTFIANQ 81 (134)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCccHHHHHHHHCCCHHHHHHHHHHHHHCCcEEEE--cCcEEEEeCC
Confidence 4466666666666677888999 78899999999999999999999999999754 5667766543
No 251
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=69.50 E-value=41 Score=26.74 Aligned_cols=42 Identities=14% Similarity=0.097 Sum_probs=37.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
...++...||+.+|++..-+-..+.+|...|-|.-.-|..++
T Consensus 41 ~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gli~r~~~~~d~ 82 (144)
T 1lj9_A 41 NPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNK 82 (144)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeecCCCCC
Confidence 457999999999999999999999999999999887766554
No 252
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=69.09 E-value=17 Score=28.79 Aligned_cols=49 Identities=8% Similarity=0.044 Sum_probs=41.4
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
.+.....++..+||+.+|++..-+-..+.+|...|-|.-.-|..++-..
T Consensus 37 ~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~glv~~~~~~~d~R~~ 85 (138)
T 3bpv_A 37 RIHREPGIKQDELATFFHVDKGTIARTLRRLEESGFIEREQDPENRRRY 85 (138)
T ss_dssp HHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEE
T ss_pred HHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCceeE
Confidence 3333567999999999999999999999999999999988887766433
No 253
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=68.88 E-value=96 Score=30.80 Aligned_cols=85 Identities=13% Similarity=0.168 Sum_probs=48.2
Q ss_pred HHHHHHHHcccHHHHHHHHHHhchhhcc-------cchh----HHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhc
Q 014555 52 ELSDLLRQENRAQDLCNLLTQLRPFFSL-------IPKA----KTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAE 120 (422)
Q Consensus 52 ~l~~~~~~~~~~~~l~~~~~~l~~~~~~-------~~k~----~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~ 120 (422)
.++.+|.+.|.|+++..++..-.+.-+. ++.. +-+|++..+--+.+.+. +..++.+|. +
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~in---------i~k~~~~~~-~ 281 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN---------IPKVLRAAE-Q 281 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSC---------HHHHHHHHH-T
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhc---------CcHHHHHHH-H
Confidence 4568888999999998887766532110 1111 22233333333222111 112334442 2
Q ss_pred chhHHhhHHHHHHHHHHHhcccHHHHHHHHHH
Q 014555 121 KRTFLRQRVEARLAALLMESREYTEALTLLTS 152 (422)
Q Consensus 121 ~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~ 152 (422)
-.+|. .++-+|.+.++|+.|...+.+
T Consensus 282 ~~~w~------e~~~ly~~~~e~d~A~~tm~~ 307 (449)
T 1b89_A 282 AHLWA------ELVFLYDKYEEYDNAIITMMN 307 (449)
T ss_dssp TTCHH------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHH------HHHHHHHhhchHHHHHHHHHh
Confidence 35666 788999999999999865543
No 254
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.85 E-value=30 Score=26.85 Aligned_cols=45 Identities=7% Similarity=-0.018 Sum_probs=39.5
Q ss_pred ccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 342 SRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 342 s~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.+||+.+ |++..-+-..|.+|...|.|....|..++-...
T Consensus 34 ~~~~~~eLa~~l~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~ 79 (112)
T 1z7u_A 34 GTKRNGELMRALDGITQRVLTDRLREMEKDGLVHRESFNELPPRVE 79 (112)
T ss_dssp SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEE
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEE
Confidence 568999999999 999999999999999999999988876664433
No 255
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=68.73 E-value=7.6 Score=31.25 Aligned_cols=46 Identities=13% Similarity=0.021 Sum_probs=35.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..++..+||+.+|+|...+++.+..|...|-|...=....|+.-..
T Consensus 25 ~~~s~~ela~~~~i~~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~ 70 (129)
T 2y75_A 25 GPTSLKSIAQTNNLSEHYLEQLVSPLRNAGLVKSIRGAYGGYVLGS 70 (129)
T ss_dssp CCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CcCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEecCCCCCceEeCC
Confidence 5689999999999999999999999999999876433334444433
No 256
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=68.57 E-value=6 Score=32.22 Aligned_cols=44 Identities=16% Similarity=0.236 Sum_probs=37.2
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
.|+..+....++++.+||+.+|+|...+-+.+.+|...|.|.+.
T Consensus 8 ~il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~i~~~ 51 (141)
T 1i1g_A 8 IILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGIIEGY 51 (141)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTSSCCC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEecc
Confidence 34445555678999999999999999999999999999999653
No 257
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=68.38 E-value=17 Score=29.20 Aligned_cols=49 Identities=12% Similarity=0.172 Sum_probs=35.8
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
++..+.... ++..+||+.+|++..-|-..|.+|...|.|.-.-|..++-
T Consensus 43 iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R 91 (146)
T 3tgn_A 43 ILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGMLETSKDSKDAR 91 (146)
T ss_dssp HHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC--------
T ss_pred HHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeccCCCCCc
Confidence 344444455 9999999999999999999999999999999888665554
No 258
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.75 E-value=19 Score=28.79 Aligned_cols=50 Identities=4% Similarity=-0.056 Sum_probs=41.5
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
.....++..+||+.+|++..-|-..|.+|...|-|.-..|..++ .+.+++
T Consensus 48 ~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~ 100 (146)
T 2fbh_A 48 RHRDSPTQRELAQSVGVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTP 100 (146)
T ss_dssp HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECT
T ss_pred HcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECH
Confidence 45678999999999999999999999999999999877765544 455544
No 259
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=67.75 E-value=11 Score=29.62 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|+..-+..-..|=.++ +...||+.||+|..-|.+-+..+..+|.|... +..|+.+.
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~al~~L~~~Gli~~~--~~~G~~V~ 74 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEYQINPLTVSKAYQSLLDDNVIEKR--RGLGMLVK 74 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--cCCeEEEe
Confidence 4455556565555566778889 89999999999999999999999999998643 55666554
No 260
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=67.37 E-value=22 Score=28.44 Aligned_cols=47 Identities=9% Similarity=-0.038 Sum_probs=39.8
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
+..+. ...++..+||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 43 L~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 89 (146)
T 2gxg_A 43 LRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGLVVRVRDREDR 89 (146)
T ss_dssp HHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCCEEeecCCCCC
Confidence 33344 678999999999999999999999999999999887765554
No 261
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=67.03 E-value=29 Score=27.79 Aligned_cols=48 Identities=10% Similarity=0.039 Sum_probs=37.5
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++...||+.+|++..-|-..|.+|...|.|.-..|..++ .+.+++
T Consensus 48 ~~~~~~~~la~~l~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 98 (147)
T 2hr3_A 48 GGDVTPSELAAAERMRSSNLAALLRELERGGLIVRHADPQDGRRTRVSLSS 98 (147)
T ss_dssp TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEC------CCEEEECH
T ss_pred CCCCCHHHHHHHhCCChhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECH
Confidence 567999999999999999999999999999999877665544 455443
No 262
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=66.72 E-value=12 Score=27.52 Aligned_cols=41 Identities=2% Similarity=0.094 Sum_probs=35.1
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
.-+.+=...+...||+.||++..+|-+.|-+|-..|.+...
T Consensus 22 ~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V~~~ 62 (75)
T 1sfu_A 22 LSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTVKMV 62 (75)
T ss_dssp HTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCEecC
Confidence 34445566999999999999999999999999999988654
No 263
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=66.58 E-value=24 Score=28.47 Aligned_cols=43 Identities=9% Similarity=0.062 Sum_probs=36.5
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
...++..+||+.+|++..-|-..|.+|...|.|.-.-|..++-
T Consensus 54 ~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R 96 (150)
T 2rdp_A 54 EGDLTVGELSNKMYLACSTTTDLVDRMERNGLVARVRDEHDRR 96 (150)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC---
T ss_pred cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCCeeecCCCCCcc
Confidence 4579999999999999999999999999999998877766553
No 264
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=66.46 E-value=20 Score=29.10 Aligned_cols=47 Identities=15% Similarity=0.123 Sum_probs=39.4
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.++.....++...||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 44 ~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~ 90 (155)
T 1s3j_A 44 ASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNLIARTHNTKDR 90 (155)
T ss_dssp HHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeecCCCCCC
Confidence 33334567999999999999999999999999999999887766554
No 265
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=66.30 E-value=23 Score=27.34 Aligned_cols=44 Identities=7% Similarity=-0.062 Sum_probs=38.6
Q ss_pred cccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 341 YSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 341 Ys~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
...+++.+|++.+ |++..-+-..|.+|...|.|..+.|..++-.
T Consensus 36 ~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~ 80 (107)
T 2fsw_A 36 RRIIRYGELKRAIPGISEKMLIDELKFLCGKGLIKKKQYPEVPPR 80 (107)
T ss_dssp TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEECSSSCE
T ss_pred hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCCEEEeecCCCCCe
Confidence 4678999999999 5999999999999999999999888766543
No 266
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=66.20 E-value=27 Score=29.03 Aligned_cols=42 Identities=7% Similarity=0.112 Sum_probs=37.8
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
...++..+||+.+|++..-+-..|.+|...|.|.-..|..++
T Consensus 57 ~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 98 (168)
T 2nyx_A 57 HGPINLATLATLLGVQPSATGRMVDRLVGAELIDRLPHPTSR 98 (168)
T ss_dssp HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 457999999999999999999999999999999887776655
No 267
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=65.86 E-value=1e+02 Score=29.99 Aligned_cols=79 Identities=14% Similarity=-0.021 Sum_probs=60.8
Q ss_pred HHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhhcc-CChhHHHHH
Q 014555 172 LESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFNAL-EDPRAVFSL 250 (422)
Q Consensus 172 ~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~~~-~~~~~~~~l 250 (422)
--+.+|+..|++.+|-..+.....--.+.. ++...-.+......+|...+|+..+...+..|-...+.+ .+|.....+
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d-d~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i 182 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLD-DKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGAL 182 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSS-CTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence 447799999999999888887765444443 567778888999999999999999998888886666655 556555544
Q ss_pred H
Q 014555 251 K 251 (422)
Q Consensus 251 k 251 (422)
+
T Consensus 183 ~ 183 (394)
T 3txn_A 183 D 183 (394)
T ss_dssp H
T ss_pred H
Confidence 4
No 268
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=65.86 E-value=22 Score=28.12 Aligned_cols=45 Identities=9% Similarity=0.092 Sum_probs=38.5
Q ss_pred hcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 338 IEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 338 ~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
+.....++..+||+.+|++..-+-..|.+|...|-|.-.-|..++
T Consensus 42 l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 86 (139)
T 3bja_A 42 LAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGYVMTEKNPNDQ 86 (139)
T ss_dssp HHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTSEEEEECSSCT
T ss_pred HHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCeeeccCCCCC
Confidence 333457999999999999999999999999999999887666555
No 269
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=65.64 E-value=32 Score=26.17 Aligned_cols=33 Identities=6% Similarity=-0.070 Sum_probs=31.3
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
++...||..+|+++..+...+-.+...|.|.-.
T Consensus 21 ~~~t~La~~~~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 21 SPKTRIMYGANLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCHHHHHHHhCcCHHHHHHHHHHHHHCCCeEEE
Confidence 999999999999999999999999999998765
No 270
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=65.61 E-value=28 Score=27.64 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=36.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
..++..+||+.+|++..-+-..|.+|...|-|.-.-|..++
T Consensus 46 ~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~D~ 86 (139)
T 3eco_A 46 DGLTQNDIAKALQRTGPTVSNLLRNLERKKLIYRYVDAQDT 86 (139)
T ss_dssp TCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECCC--
T ss_pred CCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCCCCC
Confidence 48999999999999999999999999999999887776655
No 271
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=65.50 E-value=5.8 Score=29.56 Aligned_cols=43 Identities=16% Similarity=0.196 Sum_probs=37.4
Q ss_pred HHHHHhhcccccccchhHHHHhCCChH-HHHHHHHhhhhcCCce
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPID-HVEKKLSQMILDKKFA 374 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~-evE~~l~~mI~~g~i~ 374 (422)
.-|+.+++.-...+...||+.||++.. .|-..|.+|-.+|.|.
T Consensus 14 ~~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGlV~ 57 (79)
T 1xmk_A 14 EKICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGDVY 57 (79)
T ss_dssp HHHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCCEE
Confidence 344466666677899999999999998 9999999999999997
No 272
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=65.48 E-value=21 Score=29.41 Aligned_cols=47 Identities=15% Similarity=0.159 Sum_probs=40.4
Q ss_pred HhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 336 RLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 336 ~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.++.....++..+||+.+|++..-|-..|-+|...|.|.-.-|..++
T Consensus 53 ~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~Dr 99 (162)
T 3k0l_A 53 SVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGWIEKAPDPTHG 99 (162)
T ss_dssp HHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTSEEEEECCSSS
T ss_pred HHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCeEecCCCCcC
Confidence 33333457999999999999999999999999999999988877766
No 273
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=65.47 E-value=14 Score=30.62 Aligned_cols=45 Identities=13% Similarity=-0.059 Sum_probs=35.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..++..+||+.+|+|+..+++.+.+|...|.|...=. ..|+.-..
T Consensus 29 ~~~~~~~iA~~~~i~~~~l~kil~~L~~~Glv~s~rG-~GGy~L~~ 73 (149)
T 1ylf_A 29 SLCTSDYMAESVNTNPVVIRKIMSYLKQAGFVYVNRG-PGGAGLLK 73 (149)
T ss_dssp GGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC----CCEEESS
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEccC-CCceEeCC
Confidence 5699999999999999999999999999999876544 34444333
No 274
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=65.42 E-value=22 Score=28.95 Aligned_cols=55 Identities=11% Similarity=0.065 Sum_probs=40.4
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
++.++.....++..+||+.+|++..-|-..|.+|...|-|.-..|..++ .+.+++
T Consensus 48 iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 105 (155)
T 3cdh_A 48 VLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTD 105 (155)
T ss_dssp HHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC------CCCEEECH
T ss_pred HHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECH
Confidence 3444444567999999999999999999999999999999876655444 455543
No 275
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=65.31 E-value=19 Score=29.07 Aligned_cols=55 Identities=2% Similarity=-0.001 Sum_probs=43.0
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
++..+.....++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 45 iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~ 102 (152)
T 3bj6_A 45 ILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWLTP 102 (152)
T ss_dssp HHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECH
T ss_pred HHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEECh
Confidence 3334444557999999999999999999999999999999877665444 555544
No 276
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=65.20 E-value=10 Score=30.33 Aligned_cols=46 Identities=7% Similarity=0.007 Sum_probs=38.9
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.+.....++..+||+.+|++..-|-..+.+|...|.|.-.-|..++
T Consensus 39 ~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gli~~~~~~~d~ 84 (142)
T 3bdd_A 39 TLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGYIIRKRNPDNQ 84 (142)
T ss_dssp HHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 3333457999999999999999999999999999999887775554
No 277
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=65.18 E-value=17 Score=29.13 Aligned_cols=48 Identities=8% Similarity=0.070 Sum_probs=38.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-+-..|.+|...|-|.-.-|..++ .|.+++
T Consensus 49 ~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 99 (143)
T 3oop_A 49 NEPISQKEIALWTKKDTPTVNRIVDVLLRKELIVREISTEDRRISLLSLTD 99 (143)
T ss_dssp HSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEEECH
T ss_pred cCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCCeeccCCCccCceeeeeECH
Confidence 467999999999999999999999999999999877755544 555554
No 278
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=65.17 E-value=64 Score=27.46 Aligned_cols=67 Identities=10% Similarity=0.016 Sum_probs=45.1
Q ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhh-c--cchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccC
Q 014555 134 AALLMESREYTEALTLLTSLVKEVRRL-D--DKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAI 200 (422)
Q Consensus 134 a~~~~~~g~~~~A~~~l~~l~~e~~~~-~--~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i 200 (422)
.+-+++.|.|+.|.-+.+-++.-.... + ......++.+.-+..++..++|.+|...|.+|......+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l 96 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKAL 96 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHH
Confidence 344677788888765544443332111 1 245667777777889999999999999999986554443
No 279
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=64.92 E-value=14 Score=29.79 Aligned_cols=43 Identities=2% Similarity=-0.021 Sum_probs=30.1
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++-
T Consensus 49 ~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR 91 (142)
T 3ech_A 49 QRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQR 91 (142)
T ss_dssp TTTCCHHHHHHHHC---CHHHHHHHHHHHTTSEEC--------
T ss_pred CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCCEeeccCCCCCC
Confidence 4579999999999999999999999999999999887776663
No 280
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=64.42 E-value=29 Score=29.67 Aligned_cols=70 Identities=13% Similarity=0.022 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHhhccCC--CCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 170 DLLESKLHFSLRNLPKAKAALTAARTAANAIY--VPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 170 ~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~--~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
++.+++..+..+-++-|......+.+..+.-+ .+|...+....+-|..+..+++|..|...|..|..-..
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45678888899999999888887666553321 26788888999999999999999999999999865443
No 281
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=63.64 E-value=18 Score=29.04 Aligned_cols=48 Identities=17% Similarity=0.032 Sum_probs=40.3
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-+-..|.+|...|-|.-.-|..++ .|.+++
T Consensus 43 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~ 93 (145)
T 3g3z_A 43 EGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTE 93 (145)
T ss_dssp HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeECh
Confidence 345999999999999999999999999999999876665555 556654
No 282
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=63.60 E-value=16 Score=30.15 Aligned_cols=54 Identities=13% Similarity=0.040 Sum_probs=40.6
Q ss_pred HHHHHhhcc--cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 332 QNLCRLIEP--YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 332 ~~l~~i~~p--Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
+.+.-+... -..++.++||+.+|+|+..+++.+.+|-..|.|..+=....|+.-
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~L 70 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGPLRNAGLIRSVRGAKGGYQL 70 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECSSSSSEEEE
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCEEEecCCCCCCeee
Confidence 444444432 246999999999999999999999999999998875444344443
No 283
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=63.24 E-value=24 Score=28.94 Aligned_cols=48 Identities=4% Similarity=0.128 Sum_probs=39.0
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 62 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~ 112 (159)
T 3s2w_A 62 EDGINQESLSDYLKIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTE 112 (159)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECH
Confidence 467999999999999999999999999999999988766665 445543
No 284
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=63.08 E-value=25 Score=29.71 Aligned_cols=57 Identities=11% Similarity=0.018 Sum_probs=42.9
Q ss_pred HHHHHhhcc--cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 332 QNLCRLIEP--YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 332 ~~l~~i~~p--Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
+.+.-+... -..++.++||+.+|+|+..+++.+.++...|.|..+=....|+.-..+
T Consensus 31 r~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~ 89 (159)
T 3lwf_A 31 TITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGD 89 (159)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEECSTTCEEEECSC
T ss_pred HHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEecCCCCceEecCC
Confidence 444444432 246999999999999999999999999999999877555455544433
No 285
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=62.99 E-value=31 Score=28.05 Aligned_cols=42 Identities=12% Similarity=0.150 Sum_probs=37.2
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++
T Consensus 56 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 97 (154)
T 2eth_A 56 FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDR 97 (154)
T ss_dssp HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTS
T ss_pred cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCc
Confidence 347999999999999999999999999999999887766554
No 286
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=62.74 E-value=14 Score=29.77 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..+++.|+..-+..-+.|=.++ +...||+.||++..-|.+-+..+..+|.|..+ +..|+.+..
T Consensus 16 ~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 79 (125)
T 3neu_A 16 SQISDWMKKQMITGEWKGEDKLPSVREMGVKLAVNPNTVSRAYQELERAGYIYAK--RGMGSFVTS 79 (125)
T ss_dssp HHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCeEEEe--cCCEEEEec
Confidence 4456556565555566788888 59999999999999999999999999998653 556766654
No 287
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=62.31 E-value=13 Score=29.95 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..+++.|+..-+..-+.|=.++ +...||+.||+|..-|.+-+..|..+|.|.. -+..|+.+..
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~~vSr~tvr~Al~~L~~~Gli~~--~~g~G~~V~~ 77 (126)
T 3by6_A 14 LQLVDRIKNEVATDVLSANDQLPSVRETALQEKINPNTVAKAYKELEAQKVIRT--IPGKGTFITG 77 (126)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEECS
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--ecCCeEEEcc
Confidence 4455555555555566778899 9999999999999999999999999999854 4566776653
No 288
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=60.20 E-value=43 Score=26.64 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=57.9
Q ss_pred HHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHhhccCCCCchhhH
Q 014555 133 LAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS----LRNLPKAKAALTAARTAANAIYVPPAQQG 208 (422)
Q Consensus 133 La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~----~~n~~kak~~l~~a~~~~~~i~~~~~i~a 208 (422)
|+.+|...+.+++|.+.+...... .+ .+.+..-..+|.. .+|+.+|...+++|-... +|. +
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----~~~--a 95 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----DQD--G 95 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----CHH--H
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC----CC----HHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC-----CHH--H
Confidence 888888888888888887765432 11 2222333456666 789999999999886542 111 1
Q ss_pred HHHHHHHHHhch----hhcHHHHHHHHHHHhh
Q 014555 209 TIDLQSGILHAE----EKDYKTAYSYFFEAFE 236 (422)
Q Consensus 209 ~i~~~~g~~~~~----~~dy~~A~~~f~ea~~ 236 (422)
. ..-|.+|.. .+|+..|..+|-.+.+
T Consensus 96 ~--~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 125 (138)
T 1klx_A 96 C--LILGYKQYAGKGVVKNEKQAVKTFEKACR 125 (138)
T ss_dssp H--HHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHCCCCCCcCHHHHHHHHHHHHH
Confidence 1 124555555 8999999999998875
No 289
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=59.99 E-value=31 Score=27.73 Aligned_cols=49 Identities=20% Similarity=0.218 Sum_probs=39.5
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
+......++...||+.+|++..-|-+.|.+|...|.|.-. +++.+.+++
T Consensus 16 l~~~~~~~~~~ela~~l~vs~~tvs~~l~~Le~~Glv~r~---~~~~~~LT~ 64 (142)
T 1on2_A 16 LIEEKGYARVSDIAEALAVHPSSVTKMVQKLDKDEYLIYE---KYRGLVLTS 64 (142)
T ss_dssp HHHHHSSCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEE---TTTEEEECH
T ss_pred HHhhcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe---eCceEEEch
Confidence 3334467999999999999999999999999999988654 346677664
No 290
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=59.85 E-value=5.6 Score=30.68 Aligned_cols=63 Identities=10% Similarity=0.128 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..+.+.++..-+...+.|=..+ +..+||+.||+|..-|-+.+..|...|.|.. -+..|+.+..
T Consensus 14 ~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~~vSr~tvr~al~~L~~~Gli~~--~~g~G~~v~~ 77 (102)
T 1v4r_A 14 ADVATHFRTLIKSGELAPGDTLPSVADIRAQFGVAAKTVSRALAVLKSEGLVSS--RGALGTVVEK 77 (102)
T ss_dssp HHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHSSSCTTHHHHHTTTTTTSSCCEE--ETTTEEESCS
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEE--eCCCeEEEcc
Confidence 3455555544444455666788 9999999999999999999999999999864 3445655443
No 291
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=59.55 E-value=12 Score=29.11 Aligned_cols=51 Identities=10% Similarity=0.048 Sum_probs=40.9
Q ss_pred Hhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 336 RLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 336 ~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+.|-.++ +...||+.||++..-|.+-+..|..+|.|...-.-..|+.+.
T Consensus 35 ~~l~~g~~lps~~eLa~~lgVSr~tVr~al~~L~~~GlI~~~~gG~~G~~V~ 86 (102)
T 2b0l_A 35 EELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGTYIK 86 (102)
T ss_dssp TSSBTTEEEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSSCEEEE
T ss_pred hhhcCCCcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeCCCCcEEEe
Confidence 666777777 999999999999999999999999999986543223465544
No 292
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=59.53 E-value=29 Score=28.41 Aligned_cols=45 Identities=9% Similarity=0.121 Sum_probs=36.9
Q ss_pred hcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 338 IEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 338 ~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
+.....++..+||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 61 l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gli~r~~~~~d~ 105 (162)
T 3cjn_A 61 LSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGLVRREVDSDDQ 105 (162)
T ss_dssp HHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC--CC
T ss_pred HHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEecCCCCCC
Confidence 333457999999999999999999999999999999877655444
No 293
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=59.00 E-value=34 Score=27.04 Aligned_cols=41 Identities=10% Similarity=0.088 Sum_probs=37.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
..++..+||+.++++..-+-..|-+|...|-|.-..|..++
T Consensus 52 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 92 (127)
T 2frh_A 52 KEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDE 92 (127)
T ss_dssp SEEEHHHHHHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSS
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCCCCCC
Confidence 57999999999999999999999999999999877666655
No 294
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=58.52 E-value=14 Score=30.19 Aligned_cols=48 Identities=6% Similarity=0.014 Sum_probs=39.5
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCcee--eeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG--TLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--kIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-+-..|.+|...|.|.- .-|..++ .+.+++
T Consensus 53 ~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~ 105 (154)
T 2qww_A 53 TPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSK 105 (154)
T ss_dssp STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECH
Confidence 45699999999999999999999999999999988 6666655 566654
No 295
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=58.46 E-value=22 Score=26.63 Aligned_cols=32 Identities=9% Similarity=0.015 Sum_probs=30.9
Q ss_pred cccchhHHHHhCCChHH-HHHHHHhhhhcCCce
Q 014555 343 RVEIAHIAELIELPIDH-VEKKLSQMILDKKFA 374 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~e-vE~~l~~mI~~g~i~ 374 (422)
.++..+||+.+|++..- +-..|.+|...|-|.
T Consensus 30 ~~t~~eLa~~l~is~~t~vs~~l~~Le~~Glv~ 62 (95)
T 2pg4_A 30 EPSLAEIVKASGVSEKTFFMGLKDRLIRAGLVK 62 (95)
T ss_dssp CCCHHHHHHHHCCCHHHHHTTHHHHHHHTTSEE
T ss_pred CCCHHHHHHHHCCCchHHHHHHHHHHHHCCCee
Confidence 69999999999999999 999999999999998
No 296
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=58.14 E-value=20 Score=27.00 Aligned_cols=44 Identities=7% Similarity=0.021 Sum_probs=36.4
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
..++..+||+.+|++..-|-+.|..|...|.|...- |...+...
T Consensus 42 ~~~~~~eLa~~l~is~~tv~~~L~~L~~~Glv~~~~----g~y~l~~~ 85 (96)
T 1y0u_A 42 KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFCIERVG----ERWVVTDA 85 (96)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET----TEEEECTT
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEC----CEEEECCC
Confidence 568999999999999999999999999999997532 55555443
No 297
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=58.05 E-value=25 Score=28.78 Aligned_cols=42 Identities=5% Similarity=0.078 Sum_probs=33.1
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
...++...||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 61 ~~~~t~~ela~~l~is~~tvs~~l~~Le~~glv~r~~~~~d~ 102 (162)
T 2fa5_A 61 YPGSSASEVSDRTAMDKVAVSRAVARLLERGFIRRETHGDDR 102 (162)
T ss_dssp STTCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeecCCCCC
Confidence 567999999999999999999999999999999876655544
No 298
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=57.59 E-value=30 Score=28.42 Aligned_cols=42 Identities=5% Similarity=0.082 Sum_probs=38.5
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
...+++++|++.+|++..-+-..|.+|...|.|....+..++
T Consensus 35 ~g~~~~~eLa~~lgis~~tls~~L~~Le~~GlI~r~~~~~d~ 76 (146)
T 2f2e_A 35 EGLTRFGEFQKSLGLAKNILAARLRNLVEHGVMVAVPAESGS 76 (146)
T ss_dssp TTCCSHHHHHHHHCCCHHHHHHHHHHHHHTTSEEEEECSSSS
T ss_pred hCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEEecCCCC
Confidence 457899999999999999999999999999999998877766
No 299
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=57.43 E-value=30 Score=28.47 Aligned_cols=48 Identities=10% Similarity=0.242 Sum_probs=38.7
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 65 ~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~ 115 (161)
T 3e6m_A 65 YGELTVGQLATLGVMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTR 115 (161)
T ss_dssp HSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEEECH
T ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECH
Confidence 357999999999999999999999999999999877665554 555554
No 300
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=57.32 E-value=14 Score=29.27 Aligned_cols=54 Identities=11% Similarity=0.168 Sum_probs=43.8
Q ss_pred HHHHHhhcccccccchhHHHHh--CCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELI--ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l--~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
..|+.++....+++...||+.+ |++..-|-+.|.+|...|.|... ..|+..+++
T Consensus 16 ~~IL~~L~~~g~~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~---~rg~Y~LT~ 71 (111)
T 3b73_A 16 DRILEIIHEEGNGSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL---ANGVYVITE 71 (111)
T ss_dssp HHHHHHHHHHSCBCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC---STTCEEECH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec---CCceEEECc
Confidence 4455556556799999999999 99999999999999999999874 556555543
No 301
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=57.26 E-value=19 Score=29.16 Aligned_cols=62 Identities=10% Similarity=0.160 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|+..-+..-+.|=.++ +...||+.||+|..-|-+-+..|..+|.|.. -+..|+.+.
T Consensus 7 ~~i~~~i~~~I~~g~l~~G~~LPse~~La~~~gvSr~tVr~Al~~L~~~Gli~~--~~g~G~~V~ 69 (129)
T 2ek5_A 7 KQIASLIEDSIVDGTLSIDQRVPSTNELAAFHRINPATARNGLTLLVEAGILYK--KRGIGMFVS 69 (129)
T ss_dssp HHHHHHHHHHHHTTSSCTTSCBCCHHHHHHHTTCCHHHHHHHHHHHHTTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE--ecCCEEEEe
Confidence 3455555555555556677889 8999999999999999999999999999854 455676654
No 302
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=56.66 E-value=13 Score=30.12 Aligned_cols=46 Identities=11% Similarity=0.144 Sum_probs=34.6
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.+.....++..+||+.+|++..-+-..|.+|...|-|.-.-|..++
T Consensus 48 ~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~ 93 (148)
T 3nrv_A 48 VLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKYIEVNGHSEDK 93 (148)
T ss_dssp HHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEC-------
T ss_pred HHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 3334458999999999999999999999999999999877665554
No 303
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=56.59 E-value=20 Score=28.52 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=39.3
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
.++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 50 ~~~~~ela~~l~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~ 98 (141)
T 3bro_A 50 EVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTK 98 (141)
T ss_dssp CCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECH
T ss_pred CcCHHHHHHHHCCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECH
Confidence 7999999999999999999999999999999887776555 444443
No 304
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=56.22 E-value=15 Score=29.48 Aligned_cols=55 Identities=15% Similarity=0.122 Sum_probs=41.2
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
++.++.....++..+||+.++++..-+-..+.+|...|-|.-.-|..++ .|.+++
T Consensus 41 vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 98 (140)
T 3hsr_A 41 VLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTE 98 (140)
T ss_dssp HHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred HHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeECh
Confidence 3444444578999999999999999999999999999999988776665 555544
No 305
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=55.33 E-value=18 Score=27.27 Aligned_cols=46 Identities=17% Similarity=0.098 Sum_probs=37.5
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.++..+||+.+|++..-+-..|.+|...|-|...-|.-...|.+++
T Consensus 30 ~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 30 DVYIQYIASKVNSPHSYVWLIIKKFEEAKMVECELEGRTKIIRLTD 75 (95)
T ss_dssp CEEHHHHHHHSSSCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CcCHHHHHHHHCcCHHHHHHHHHHHHHCcCccCCCCCCeEEEEECh
Confidence 3999999999999999999999999999999444454444566653
No 306
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=55.28 E-value=40 Score=28.74 Aligned_cols=43 Identities=7% Similarity=0.067 Sum_probs=39.4
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
|...++...||+.+|++..-+-..|.+|...|-|.-.-|..++
T Consensus 54 ~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~Dr 96 (189)
T 3nqo_A 54 PEEETTLNNIARKMGTSKQNINRLVANLEKNGYVDVIPSPHDK 96 (189)
T ss_dssp CGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCS
T ss_pred cCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeccCCCCC
Confidence 4568999999999999999999999999999999988887776
No 307
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=54.93 E-value=48 Score=26.37 Aligned_cols=40 Identities=5% Similarity=-0.014 Sum_probs=36.9
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
+.++||+.+|++..-+-..|.+|...|-|.-.-|..++-.
T Consensus 52 ~~~~la~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~ 91 (144)
T 3f3x_A 52 SMVYLANRYFVTQSAITAAVDKLEAKGLVRRIRDSKDRRI 91 (144)
T ss_dssp EHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred CHHHHHHHHCCChhHHHHHHHHHHHCCCEEeccCCCCCce
Confidence 9999999999999999999999999999999888877743
No 308
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=54.62 E-value=28 Score=26.65 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=33.4
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
..+++.+||+.+|++..-+-+.|..|...|.|...-+
T Consensus 38 ~~~~~~ela~~l~is~stvs~~L~~L~~~Glv~~~~~ 74 (106)
T 1r1u_A 38 SEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQ 74 (106)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4579999999999999999999999999999987644
No 309
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=54.49 E-value=17 Score=29.15 Aligned_cols=46 Identities=13% Similarity=0.051 Sum_probs=38.7
Q ss_pred hhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 337 LIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 337 i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
++.....++..+||+.+|++..-|-..|.+|...|.|.-.-|..++
T Consensus 45 ~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gli~r~~~~~d~ 90 (142)
T 2bv6_A 45 ILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQ 90 (142)
T ss_dssp HHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSST
T ss_pred HHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCc
Confidence 3333456999999999999999999999999999999887775554
No 310
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=53.88 E-value=84 Score=25.18 Aligned_cols=45 Identities=7% Similarity=-0.003 Sum_probs=39.6
Q ss_pred cccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 341 YSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 341 Ys~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
...+++.+|++.+ |++..-+-..|.+|...|.|.-+.|..++-..
T Consensus 46 ~g~~~~~eLa~~l~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~ 91 (131)
T 1yyv_A 46 DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHV 91 (131)
T ss_dssp GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEE
T ss_pred cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeE
Confidence 4678999999999 79999999999999999999998887666433
No 311
>2k9l_A RNA polymerase sigma factor RPON; protein, transcription; NMR {Aquifex aeolicus}
Probab=53.60 E-value=9.3 Score=28.05 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=23.9
Q ss_pred cccccchhHHHHhCCChHHHHHHHHh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQ 366 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~ 366 (422)
|-+.++..||..+|++.++||..+..
T Consensus 46 YL~~~l~eia~~l~~~~~eve~vL~~ 71 (76)
T 2k9l_A 46 FLSKSVEEISDVLRCSVEELEKVRQK 71 (76)
T ss_dssp TTCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 88999999999999999999998764
No 312
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=53.39 E-value=52 Score=27.27 Aligned_cols=48 Identities=10% Similarity=0.009 Sum_probs=36.9
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.++++..-|-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 66 ~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 116 (166)
T 3deu_A 66 PPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTE 116 (166)
T ss_dssp CSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEC--------CEEEECG
T ss_pred CCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECH
Confidence 346999999999999999999999999999999887755554 555554
No 313
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=53.03 E-value=18 Score=29.47 Aligned_cols=48 Identities=13% Similarity=0.077 Sum_probs=37.7
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-|-..|.+|...|.|.-..|..++ .+.+++
T Consensus 59 ~~~~t~~ela~~l~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~ 109 (153)
T 2pex_A 59 TDERSVSEIGERLYLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTE 109 (153)
T ss_dssp SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEC-------CEEEECH
T ss_pred CCCcCHHHHHHHhCCCcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECH
Confidence 467999999999999999999999999999999877765554 555554
No 314
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=53.00 E-value=15 Score=31.14 Aligned_cols=46 Identities=20% Similarity=0.191 Sum_probs=37.7
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
-..++.++||+.+|+|+..+++.+.++-..|-|...=-...|+.-.
T Consensus 26 ~~~~s~~~IA~~~~is~~~l~kil~~L~~aGlv~s~rG~~GGy~La 71 (162)
T 3k69_A 26 DSKVASRELAQSLHLNPVMIRNILSVLHKHGYLTGTVGKNGGYQLD 71 (162)
T ss_dssp TSCBCHHHHHHHHTSCGGGTHHHHHHHHHTTSSEEECSTTCEEECC
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEeecCCCCCeEec
Confidence 3569999999999999999999999999999997664444454433
No 315
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=52.77 E-value=90 Score=25.20 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=51.1
Q ss_pred cccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeecCCCEE---EEecCCc-hhhHHHHHHHHHHHHHHHH
Q 014555 341 YSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQGVGCL---IIFEDPK-ADAIYPATLETISNMGKVV 410 (422)
Q Consensus 341 Ys~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v---~~~~~~~-~~~~~~~l~~~~~~l~~l~ 410 (422)
....++++|++.+ |++..-+-..|.+|..+|.|.-+.+..++-- .+++.-. -......+.+|+..-..-+
T Consensus 37 ~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~~~l~~l~~W~~~~~~~~ 111 (131)
T 4a5n_A 37 DGKKRFNEFRRICPSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLEPIVLQMKEWGESNRDVL 111 (131)
T ss_dssp TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGHHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999 9999999999999999999998887765532 3333221 1123566778887654443
No 316
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=52.52 E-value=14 Score=30.11 Aligned_cols=54 Identities=7% Similarity=0.034 Sum_probs=38.5
Q ss_pred HHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 335 CRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 335 ~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
+.++.....++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 47 L~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~ 103 (149)
T 4hbl_A 47 MLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTD 103 (149)
T ss_dssp HHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTSEEC---------CEEEECS
T ss_pred HHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECH
Confidence 333333477999999999999999999999999999999877766555 455544
No 317
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=52.01 E-value=1.4e+02 Score=29.84 Aligned_cols=121 Identities=15% Similarity=0.227 Sum_probs=77.1
Q ss_pred hHHHHHHHHhhcCCC-CCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCC
Q 014555 22 PSDAISMLYRVLDDP-SSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIP 100 (422)
Q Consensus 22 ~~~Ai~~l~~i~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~ 100 (422)
.+.|.+.|....... ..+ ..++..++..|++.|+++...+++..+... +..|.. ..-+.+|..+.+..
T Consensus 86 l~~A~~lf~~M~~~G~~Pd-------~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~-g~~Pd~---~tyn~lI~~~~~~g 154 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPN-------EATFTNGARLAVAKDDPEMAFDMVKQMKAF-GIQPRL---RSYGPALFGFCRKG 154 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCH---HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCcc---ceehHHHHHHHHCC
Confidence 467777777766542 222 224567889999999999999999888753 222222 23466777776544
Q ss_pred CChhHHHHHHHHHHHHHHh-cchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhh
Q 014555 101 GTSELQIALCKEMVQWTRA-EKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRL 160 (422)
Q Consensus 101 ~~~~~~~~l~~~~i~~~~~-~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~ 160 (422)
+ .+.-.+++++..+.--. +..+| .-|.+.+...|++++|.++++++......+
T Consensus 155 ~-~~~A~~l~~~M~~~G~~Pd~~ty------~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~p 208 (501)
T 4g26_A 155 D-ADKAYEVDAHMVESEVVPEEPEL------AALLKVSMDTKNADKVYKTLQRLRDLVRQV 208 (501)
T ss_dssp C-HHHHHHHHHHHHHTTCCCCHHHH------HHHHHHHHHTTCHHHHHHHHHHHHHHTSSB
T ss_pred C-HHHHHHHHHHHHhcCCCCCHHHH------HHHHHHHhhCCCHHHHHHHHHHHHHhCCCc
Confidence 3 34445666665442000 11122 268888999999999999999987654433
No 318
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=51.99 E-value=8.2 Score=37.40 Aligned_cols=57 Identities=18% Similarity=0.187 Sum_probs=37.3
Q ss_pred HHHhHHHHHHHHHHHH---HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 318 VHRHLSSLYDTLLEQN---LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 318 l~~~~~~L~~~i~~~~---l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
+++|...+-+.++..| +++++. ...+|-.+||+.+|++..-|-+.+.+|+.+|.|..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~il~~l~-~~~~sr~~la~~~gls~~tv~~~v~~L~~~gli~~ 65 (380)
T 2hoe_A 6 IHHHHHHMPKSVRAENISRILKRIM-KSPVSRVELAEELGLTKTTVGEIAKIFLEKGIVVE 65 (380)
T ss_dssp ----------------CCCSHHHHH-HSCBCHHHHHHHHTCCHHHHHHHHHHHHHHTSEEE
T ss_pred cccccccCchhHHHHHHHHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe
Confidence 3445555556666654 567777 88999999999999999999999999999999953
No 319
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=51.62 E-value=54 Score=27.00 Aligned_cols=42 Identities=7% Similarity=-0.035 Sum_probs=35.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
..++..+||+.+|++..-|-..|.+|...|.|.-.-|..++-
T Consensus 61 ~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR 102 (168)
T 3u2r_A 61 EGMATLQIADRLISRAPDITRLIDRLDDRGLVLRTRKPENRR 102 (168)
T ss_dssp SCEEHHHHHHHC---CTHHHHHHHHHHHTTSEEEEEETTEEE
T ss_pred CCcCHHHHHHHHCCChhhHHHHHHHHHHCCCEeecCCCCCCC
Confidence 479999999999999999999999999999999988887773
No 320
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=51.61 E-value=55 Score=25.79 Aligned_cols=37 Identities=11% Similarity=0.139 Sum_probs=32.9
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeee
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTL 377 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkI 377 (422)
...+++.+||+.+|++..-+-+.|..|...|.|...-
T Consensus 54 ~~~~s~~eLa~~l~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 54 DEELCVCDIANILGVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp SSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3568999999999999999999999999999997743
No 321
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.53 E-value=42 Score=25.10 Aligned_cols=61 Identities=13% Similarity=-0.009 Sum_probs=46.8
Q ss_pred chHHHHHhh-cCC---hHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhh
Q 014555 10 TDSIAQAKE-ASN---PSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFF 77 (422)
Q Consensus 10 ~~~~ak~~~-~~~---~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~ 77 (422)
...-|..+. ..+ .++|...|...++.++.. .+++..++..+++.|+|+.-.+..+.+...-
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~-------~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYN-------EAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTC-------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 444566653 223 689999999999876633 5688899999999999999999998887633
No 322
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=51.42 E-value=65 Score=23.95 Aligned_cols=57 Identities=11% Similarity=0.058 Sum_probs=39.7
Q ss_pred HHHHHhhCC---HHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 174 SKLHFSLRN---LPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 174 ~~~~~~~~n---~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
..+.+..++ ..+|+..+.+|.... |....+.+ .-|..+...++|..|..+|-.+...
T Consensus 13 a~al~~~~~~~~~~~A~~~l~~AL~~d-----p~~~rA~~--~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 13 ATTLYYLHKQAMTDEVSLLLEQALQLE-----PYNEAALS--LIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHTTTTCCCHHHHHHHHHHHHHC-----TTCHHHHH--HHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHC-----cCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 444443443 689999999887763 22233333 3588999999999999988887764
No 323
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=50.78 E-value=16 Score=25.28 Aligned_cols=42 Identities=19% Similarity=0.169 Sum_probs=33.3
Q ss_pred HHHHhhcc-cccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 333 NLCRLIEP-YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 333 ~l~~i~~p-Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
-++.+++. =--+.++..|+.+|++.++|-..|.++=..|.|.
T Consensus 14 ~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 14 ELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCee
Confidence 34444442 2457889999999999999999999999988874
No 324
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=50.48 E-value=20 Score=31.22 Aligned_cols=42 Identities=7% Similarity=0.191 Sum_probs=36.2
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
|+.++. -.+++..+||+.+|++..-+-+.+.+|...|.|.+.
T Consensus 25 IL~~L~-~~~~s~~eLA~~lglS~stv~~~l~~Le~~GlI~~~ 66 (192)
T 1uly_A 25 ILKLLR-NKEMTISQLSEILGKTPQTIYHHIEKLKEAGLVEVK 66 (192)
T ss_dssp HHHHHT-TCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHH-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 334444 368999999999999999999999999999999876
No 325
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=50.42 E-value=31 Score=25.49 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=31.0
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
+.=+-++-..||+.+|++..+|.+.+-+|=.+|+|.
T Consensus 30 eaG~PlkageIae~~GvdKKeVdKaik~LKkEgkI~ 65 (80)
T 2lnb_A 30 EAGSPVKLAQLVKECQAPKRELNQVLYRMKKELKVS 65 (80)
T ss_dssp HHTSCEEHHHHHHHHTSCHHHHHHHHHHHHHTTSEE
T ss_pred HcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHcCCcc
Confidence 334568889999999999999999999999998864
No 326
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=49.81 E-value=16 Score=29.41 Aligned_cols=48 Identities=10% Similarity=0.086 Sum_probs=39.7
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++..+||+.+|++..-|-..|.+|...|.|.-..|..++ .+.+++
T Consensus 52 ~~~~~~~~la~~l~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~ 102 (147)
T 1z91_A 52 HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTE 102 (147)
T ss_dssp HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECH
T ss_pred CCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECH
Confidence 347899999999999999999999999999999876665444 455554
No 327
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=49.18 E-value=1.2e+02 Score=25.46 Aligned_cols=115 Identities=11% Similarity=0.010 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHhcchhHHhhH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTRAEKRTFLRQR 128 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~~~~r~~lr~~ 128 (422)
.++..+..+++.|++++-.+.+.....+-+..+.+ . +-.. .. +..+ .
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~--------------~-a~~~-~~------~~a~------a----- 59 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPE--------------E-AFDH-AG------FDAF------C----- 59 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTT--------------S-CCCH-HH------HHHH------H-----
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcch--------------h-hhhh-cc------chHH------H-----
Confidence 45778889999999999888887776655543322 0 1000 00 0001 2
Q ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHh-----hhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 129 VEARLAALLMESREYTEALTLLTSLVKEVR-----RLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 129 l~~~La~~~~~~g~~~~A~~~l~~l~~e~~-----~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
-..++..+...|+|++|+......+.-.. .+++....+..+......+..+|++..|-..|.+|..+.
T Consensus 60 -~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 60 -HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp -HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 22778889999999999999888775311 112222333333677788899999999999999998775
No 328
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=48.89 E-value=1.1e+02 Score=32.09 Aligned_cols=117 Identities=6% Similarity=-0.059 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHH-HHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHH
Q 014555 109 LCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEAL-TLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAK 187 (422)
Q Consensus 109 l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~-~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak 187 (422)
++++++..+-....+|+ ..|+++...|+.++|. +++..-..-+.. . ..+.+.-+.+.-..|++.+|+
T Consensus 331 ~Ye~aL~~~p~~~~lW~------~ya~~~~~~~~~~~a~r~il~rAi~~~P~----s--~~Lwl~~a~~ee~~~~~e~aR 398 (679)
T 4e6h_A 331 VYMQAAQHVCFAPEIWF------NMANYQGEKNTDSTVITKYLKLGQQCIPN----S--AVLAFSLSEQYELNTKIPEIE 398 (679)
T ss_dssp HHHHHHHHTTTCHHHHH------HHHHHHHHHSCCTTHHHHHHHHHHHHCTT----C--HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHcCCCHHHHH------HHHHHHHhcCcHHHHHHHHHHHHHHhCCC----C--HHHHHHHHHHHHHhCCHHHHH
Confidence 34444443333334555 5677888888888886 888776644332 2 233444566777889999999
Q ss_pred HHHHHHHHhh--------ccCCCCch-------hhHHHHHHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 188 AALTAARTAA--------NAIYVPPA-------QQGTIDLQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 188 ~~l~~a~~~~--------~~i~~~~~-------i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
.+|+++.... ..++.++. -...+-.....+....++...|...|-.|...
T Consensus 399 ~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 399 TTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999887542 11110000 01112222233333456777788888777654
No 329
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=48.76 E-value=17 Score=29.57 Aligned_cols=54 Identities=6% Similarity=0.095 Sum_probs=38.9
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee--eeecCCC---EEEEec
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG--TLDQGVG---CLIIFE 388 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--kIDq~~g---~v~~~~ 388 (422)
++.++ ....++..+||+.+|++..-+-..|.+|...|.|.- ..|..++ .|.+++
T Consensus 43 iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~ 101 (151)
T 3kp7_A 43 VLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSN 101 (151)
T ss_dssp HHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTSEEC-----------CCBEECH
T ss_pred HHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECH
Confidence 33444 567899999999999999999999999999999986 3465555 445543
No 330
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=48.23 E-value=52 Score=26.40 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=32.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGC 383 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~ 383 (422)
..++..+||+.++++..-+-..|.+|...|.|.-.-|..++-
T Consensus 53 ~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R 94 (150)
T 3fm5_A 53 EGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRR 94 (150)
T ss_dssp TCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC--------
T ss_pred CCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccc
Confidence 358999999999999999999999999999998877766663
No 331
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=46.68 E-value=28 Score=27.87 Aligned_cols=51 Identities=14% Similarity=0.114 Sum_probs=40.3
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
|..+...-..+++.+||+.+|++..-|-+.+.+|...|.|.-. . +.+.++.
T Consensus 22 l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~Le~~Gli~r~--~--~~~~Lt~ 72 (139)
T 2x4h_A 22 IKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHLEEKGLVKKK--E--DGVWITN 72 (139)
T ss_dssp HHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--T--TEEEECH
T ss_pred HHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHHHHCCCEEec--C--CeEEECh
Confidence 3444445578999999999999999999999999999988642 2 5666654
No 332
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=46.25 E-value=1.3e+02 Score=26.09 Aligned_cols=93 Identities=19% Similarity=0.145 Sum_probs=56.8
Q ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHH
Q 014555 132 RLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTID 211 (422)
Q Consensus 132 ~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~ 211 (422)
-+.-.+.-.|+|..|+-+|..+-.- .-...+.-++..++|+.+|...+++.. ..++..+|.+-+.++
T Consensus 38 L~~I~LyyngEY~R~Lf~L~~lNT~-----------Ts~YYk~LCy~klKdYkkA~~~le~il--~~kvd~d~~~d~~~~ 104 (242)
T 3kae_A 38 LMSIVLYLNGEYTRALFHLHKLNTC-----------TSKYYESLCYKKKKDYKKAIKSLESIL--EGKVERDPDVDARIQ 104 (242)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTCCBH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH--TTCSBCCCCCCHHHH
T ss_pred hhhhhhhhcchHhHHHHHHHhcchH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHH--hcccccCcccccccc
Confidence 3444566789999998877664211 111223446778999999988877543 234444556555554
Q ss_pred -------------HHHHHHhchhhcHHHHHHHHHHHhhh
Q 014555 212 -------------LQSGILHAEEKDYKTAYSYFFEAFEA 237 (422)
Q Consensus 212 -------------~~~g~~~~~~~dy~~A~~~f~ea~~~ 237 (422)
...|.++-..++-++|-.+|.-+|..
T Consensus 105 ~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 105 EMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp TTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred eeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 23555555556666666666666543
No 333
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=46.24 E-value=32 Score=28.01 Aligned_cols=50 Identities=6% Similarity=0.125 Sum_probs=37.3
Q ss_pred cccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 339 EPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 339 ~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
.....++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .+.+++
T Consensus 58 ~~~~~~~~~ela~~l~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~ 110 (160)
T 3boq_A 58 RNPDGLSMGKLSGALKVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTD 110 (160)
T ss_dssp HCTTCEEHHHHHHHCSSCCSCHHHHHHHHHHHTSEEEC--------CEEEECH
T ss_pred HcCCCCCHHHHHHHHCCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEEEECh
Confidence 34467999999999999999999999999999999876655444 455543
No 334
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.79 E-value=2.2e+02 Score=27.62 Aligned_cols=99 Identities=16% Similarity=0.091 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHH---hcchhHH
Q 014555 49 AITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGTSELQIALCKEMVQWTR---AEKRTFL 125 (422)
Q Consensus 49 ~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~~~~~~~l~~~~i~~~~---~~~r~~l 125 (422)
+...+++++++.|+++...+.+..++.+... ++.++. ++-.++...-...+ .......+..+. .++.-|-
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~-~~~kid-~~l~~irl~l~~~d-----~~~~~~~~~ka~~~~~~~~d~~ 205 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAIS-TGAKID-VMLTIARLGFFYND-----QLYVKEKLEAVNSMIEKGGDWE 205 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTC-CCSHHH-HHHHHHHHHHHHTC-----HHHHHHHHHHHHHHHTTCCCTH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-hHHHHH-HHHHHHHHHHHhcc-----HHHHHHHHHHHHHhhhcCCCHH
Confidence 5567888888999888888888888776643 244432 22222221110111 111122222221 1111222
Q ss_pred -hhHHHHHHHHHHHhcccHHHHHHHHHHHH
Q 014555 126 -RQRVEARLAALLMESREYTEALTLLTSLV 154 (422)
Q Consensus 126 -r~~l~~~La~~~~~~g~~~~A~~~l~~l~ 154 (422)
+.++..--+.++...++|.+|+..+-++.
T Consensus 206 ~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~ 235 (429)
T 4b4t_R 206 RRNRYKTYYGIHCLAVRNFKEAAKLLVDSL 235 (429)
T ss_dssp HHHHHHHHHHHGGGGTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhChHHHHHHHHHHHh
Confidence 33344455555666778888777666553
No 335
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=45.69 E-value=19 Score=30.08 Aligned_cols=39 Identities=21% Similarity=0.443 Sum_probs=32.4
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee-eeecCCCEEEEe
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG-TLDQGVGCLIIF 387 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g-kIDq~~g~v~~~ 387 (422)
.-+++.++|+.||++...|- ++|.+|+|-| +++ |...|.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~----~LIr~G~L~AVr~G---r~~rVP 69 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVA----QQLREGHLVAVRRA---GGVVIP 69 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHH----HHHHTTSCCCEEET---TEEEEE
T ss_pred ceEcHHHHHHHhCCCHHHHH----HHHHCCCceEEEEC---CEEEec
Confidence 56899999999999988877 6889999998 785 666553
No 336
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=44.63 E-value=56 Score=22.04 Aligned_cols=50 Identities=6% Similarity=0.147 Sum_probs=36.6
Q ss_pred HHHHHHhhcccccccchhHHHHh-----CCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELI-----ELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l-----~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
...|..++..-..++.++|++.| +++..-|-+.|-+ .|.+ ++..++|...
T Consensus 7 ~~~i~~ll~~~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~---lg~v--~~~~~~~~~~ 61 (64)
T 2p5k_A 7 HIKIREIITSNEIETQDELVDMLKQDGYKVTQATVSRDIKE---LHLV--KVPTNNGSYK 61 (64)
T ss_dssp HHHHHHHHHHSCCCSHHHHHHHHHHTTCCCCHHHHHHHHHH---HTCE--EEEETTTEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhCCCcCHHHHHHHHHH---cCCE--EEecCCCcee
Confidence 34455555555789999999999 9999999988884 3666 5666666544
No 337
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=44.45 E-value=99 Score=24.34 Aligned_cols=37 Identities=14% Similarity=0.119 Sum_probs=33.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
...++.+||+.+|++..-+-+.|..|...|.+...-+
T Consensus 58 ~~~s~~ela~~lgis~stvs~~L~~Le~~Glv~~~~~ 94 (122)
T 1r1t_A 58 SELCVGDLAQAIGVSESAVSHQLRSLRNLRLVSYRKQ 94 (122)
T ss_dssp CCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4578999999999999999999999999999987544
No 338
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=44.45 E-value=98 Score=25.95 Aligned_cols=47 Identities=15% Similarity=0.194 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhchh-----------hcHHHHHHHHHHHhh
Q 014555 183 LPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAEE-----------KDYKTAYSYFFEAFE 236 (422)
Q Consensus 183 ~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~~-----------~dy~~A~~~f~ea~~ 236 (422)
+.+|...|++|..+. |..... ..+-|..|... ++|.+|..+|-.|.+
T Consensus 62 ~~eAi~~le~AL~ld------P~~~~A-~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~ 119 (158)
T 1zu2_A 62 IQEAITKFEEALLID------PKKDEA-VWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 119 (158)
T ss_dssp HHHHHHHHHHHHHHC------TTCHHH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC------cCcHHH-HHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH
Confidence 668888888887763 232222 23345555443 578888888877754
No 339
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=44.33 E-value=36 Score=29.20 Aligned_cols=49 Identities=12% Similarity=0.111 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhccc-ccccchhHHHHhCCChHHHHHHHHhhhhcCC-cee
Q 014555 327 DTLLEQNLCRLIEPY-SRVEIAHIAELIELPIDHVEKKLSQMILDKK-FAG 375 (422)
Q Consensus 327 ~~i~~~~l~~i~~pY-s~I~l~~la~~l~l~~~evE~~l~~mI~~g~-i~g 375 (422)
..-|...|+.++..- ..++..+||+.||+|..-|.+.|..|-..|. |.+
T Consensus 19 ~~~R~~~Il~~L~~~~~~~s~~eLa~~l~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 19 RQERLKSIVRILERSKEPVSGAQLAEELSVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHHHHHCSSCBCHHHHHHHHTSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCeEEE
Confidence 334556677777643 4499999999999999999999999998888 764
No 340
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=42.71 E-value=49 Score=27.40 Aligned_cols=53 Identities=8% Similarity=0.009 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 325 LYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 325 L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
|-+..+...|..+. -..++..+||+.+|++..-|-+.|..|...|.|..+-|.
T Consensus 55 L~~p~R~~IL~~L~--~~~~t~~eLa~~lgls~stvs~hL~~L~~aGlV~~~~~G 107 (151)
T 3f6v_A 55 AAEPTRRRLVQLLT--SGEQTVNNLAAHFPASRSAISQHLRVLTEAGLVTPRKDG 107 (151)
T ss_dssp HTSHHHHHHHHHGG--GCCEEHHHHHTTSSSCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred hCCHHHHHHHHHHH--hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecC
Confidence 33344444444443 356899999999999999999999999999999886543
No 341
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=42.57 E-value=5.2 Score=37.11 Aligned_cols=38 Identities=5% Similarity=0.256 Sum_probs=0.0
Q ss_pred ccccchhHHHHh-CCChHHHHHHHHhhhhcCCceeeeec
Q 014555 342 SRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 342 s~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
.=|+++.|++.+ ++++++|.+.+-.|+.+|.|+-.||.
T Consensus 223 ~Gi~~~~I~~~l~~~~~~~v~~al~~L~~eG~IYsTiDd 261 (270)
T 2pi2_A 223 EGLNFQDLKNQLKHMSVSSIKQAVDFLSNEGHIYSTVDD 261 (270)
T ss_dssp ---------------------------------------
T ss_pred cCCCHHHHHHHhcCCCHHHHHHHHHHHHhCCEEeccccc
Confidence 568889999998 79999999999999999999999985
No 342
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=42.32 E-value=58 Score=25.45 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=32.6
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
..+..+||+.+|++..-+-+.|..|...|.+...-|
T Consensus 34 ~~~~~eLa~~lgis~stvs~~L~~L~~~GlV~~~~~ 69 (118)
T 2jsc_A 34 VCYPGQLAAHLGLTRSNVSNHLSCLRGCGLVVATYE 69 (118)
T ss_dssp CCSTTTHHHHHSSCHHHHHHHHHHHTTTTSEEEEEC
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEEE
Confidence 478899999999999999999999999999987644
No 343
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=42.13 E-value=1.4e+02 Score=24.22 Aligned_cols=47 Identities=11% Similarity=0.065 Sum_probs=40.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
..++..+||+.+|++..-+-..|-+|...|-|.=..|..|+ .|.+++
T Consensus 45 ~~~~~~eLa~~l~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~ 94 (151)
T 4aik_A 45 PEQSQIQLAKAIGIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTE 94 (151)
T ss_dssp TTSCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECG
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCH
Confidence 34566899999999999999999999999999988888877 455554
No 344
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=41.82 E-value=32 Score=23.08 Aligned_cols=29 Identities=21% Similarity=0.195 Sum_probs=24.9
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+|+.-|...+.++..
T Consensus 11 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 39 (61)
T 2jpc_A 11 DEGYTNHGISEKLHISIKTVETHRMNMMR 39 (61)
T ss_dssp HTSCCSHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 45678899999999999999998887654
No 345
>2pft_A Exocytosis protein; helix-turn-helix, endocytosis-exocytosis complex; 2.25A {Mus musculus}
Probab=40.86 E-value=69 Score=32.78 Aligned_cols=81 Identities=10% Similarity=0.168 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccch-hHHHHhCCChHHHHH
Q 014555 284 DAMKAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIA-HIAELIELPIDHVEK 362 (422)
Q Consensus 284 ~~~~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~-~la~~l~l~~~evE~ 362 (422)
..+++-.+.|+. .|+++...++.--..||-++.-+..-....+.-++..+..-|..+.+. .-.+-+.-+++++|.
T Consensus 486 ~~iKe~fk~Fn~----~Fee~~~~q~~w~VpD~~LR~~Lr~~i~~~v~paY~~F~~r~~~~~~~k~~~KyiKytpe~le~ 561 (571)
T 2pft_A 486 QMIKERFKGFND----GLEELCKIQKVWAIPDTEQRDKIRQAQKDIVKETYGAFLHRYGSVPFTKNPEKYIKYRVEQVGD 561 (571)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCSCHHHHCCCCHHHHHH
T ss_pred HHHHHHHHHHHH----HHHHHHHhCCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCCCCccccCHHHHHH
Confidence 345666677765 677777776655567998876555555555555667777777777664 355667899999999
Q ss_pred HHHhhh
Q 014555 363 KLSQMI 368 (422)
Q Consensus 363 ~l~~mI 368 (422)
.|.++-
T Consensus 562 ~L~~LF 567 (571)
T 2pft_A 562 MIDRLF 567 (571)
T ss_dssp HHHTSS
T ss_pred HHHHHh
Confidence 998764
No 346
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=40.55 E-value=12 Score=30.16 Aligned_cols=62 Identities=15% Similarity=0.282 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|+..-+..-..|=.++ +...||+.||+|..-|-+-+..+..+|.|..+ +..|+.+.
T Consensus 14 ~~i~~~l~~~I~~g~~~~G~~lPs~~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~~~G~~V~ 76 (126)
T 3ic7_A 14 LQIADRICDDILLGQYEEEGRIPSVREYASIVEVNANTVMRSYEYLQSQEVIYNK--RGIGFFVA 76 (126)
T ss_dssp THHHHHHHHHHHTTSSCBTSEECCTTTTTTCC-CCSGGGHHHHHHHHTTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEE--cCCccEEc
Confidence 4456666666566666788899 89999999999999999999999999998654 55666654
No 347
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=40.40 E-value=22 Score=28.57 Aligned_cols=33 Identities=12% Similarity=0.207 Sum_probs=30.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCC-ce
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKK-FA 374 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~-i~ 374 (422)
.-.++..||+.-|++...++.+|.+++..|. ++
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v~~G~~l~ 64 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIVYSGTRIN 64 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHHHTTCCCC
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHHHcCCccC
Confidence 7889999999999999999999999999995 54
No 348
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=40.28 E-value=62 Score=29.12 Aligned_cols=61 Identities=15% Similarity=0.145 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
+..+++.|+..-. . ..|=.++ +-..||+.+|+|..-|-+-+..+..+|.|.. +..|+.+..
T Consensus 16 y~~i~~~l~~~I~-~-~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~---~g~Gt~V~~ 77 (248)
T 3f8m_A 16 HQVVRAELDRMLD-G-MRIGDPFPAEREIAEQFEVARETVRQALRELLIDGRVER---RGRTTVVAR 77 (248)
T ss_dssp HHHHHHHHHHHHH-H-CCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE---ETTEEEECC
T ss_pred HHHHHHHHHHHHh-C-CCCCCcCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEe---CCCEEEEcc
Confidence 3445555555444 5 7788899 8999999999999999999999999999976 778877654
No 349
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=40.15 E-value=33 Score=30.68 Aligned_cols=62 Identities=11% Similarity=0.116 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEE
Q 014555 322 LSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLI 385 (422)
Q Consensus 322 ~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~ 385 (422)
.+..++.|+..-+...+.|=.+++...||+.||+|..-|-+-|..+-.+|.+.- -+..|+.+
T Consensus 28 ~~~v~~~L~~~I~~g~l~pG~~L~e~~La~~lgVSr~~VReAL~~L~~~Glv~~--~~~~G~~V 89 (237)
T 3c7j_A 28 RTVIEEKLRNAIIDGSLPSGTALRQQELATLFGVSRMPVREALRQLEAQSLLRV--ETHKGAVV 89 (237)
T ss_dssp HHHHHHHHHHHHHTSSSCTTCBCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE--ETTTEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcCeeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--eCCCceEE
Confidence 344777777776767788999999999999999999999999999999999864 34456554
No 350
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=40.09 E-value=1.9e+02 Score=27.65 Aligned_cols=62 Identities=11% Similarity=-0.038 Sum_probs=47.4
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhh
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAA 197 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~ 197 (422)
-..++..++..|++.+|+..+..++.. ++-.+- ++..-|+.+...|+...|...|..++...
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~----~P~~E~--~~~~lm~al~~~Gr~~~Al~~y~~~r~~L 235 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFE----HPYREP--LWTQLITAYYLSDRQSDALGAYRRVKTTL 235 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHH--HHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 457888899999999999888887532 222222 44555789999999999999999887754
No 351
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=39.09 E-value=1e+02 Score=24.98 Aligned_cols=45 Identities=9% Similarity=0.034 Sum_probs=36.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
..++...||+.+|++..-|-+.|.+|...|.|.-+- ++.+.+++.
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Glv~r~~---~~~~~lT~~ 97 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGLIEMIP---WRGVFLTAE 97 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTCEEEET---TTEEEECHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCCEEEec---CCceEEChh
Confidence 567899999999999999999999999999776442 345666543
No 352
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=38.95 E-value=34 Score=33.17 Aligned_cols=44 Identities=18% Similarity=0.266 Sum_probs=38.4
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
..+++++.....+|-.+||+.+|++..-|-+.+.+|+.+|.|..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls~~tv~~~v~~L~~~g~i~~ 62 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVHEMLEAHLVQE 62 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEe
Confidence 34566666788999999999999999999999999999998853
No 353
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=38.94 E-value=54 Score=29.61 Aligned_cols=46 Identities=9% Similarity=0.052 Sum_probs=39.4
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
...+++.+||+.+|+|..-+-+.|.+|...|-|... ...+.+..+.
T Consensus 164 ~~~~s~~eLA~~lglsksTv~r~L~~Le~~GlV~r~--~r~~~~~LT~ 209 (244)
T 2wte_A 164 TKGTGITELAKMLDKSEKTLINKIAELKKFGILTQK--GKDRKVELNE 209 (244)
T ss_dssp HTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTTEEEECH
T ss_pred cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEe--CCccEEEECH
Confidence 357999999999999999999999999999999875 4466677654
No 354
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=37.94 E-value=36 Score=25.67 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=29.3
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
++.++.+. +.-.+..+||+.+|+++.-|...+.++..
T Consensus 32 e~~vl~l~--~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 32 ERTLLGLL--SEGLTNKQIADRMFLAEKTVKNYVSRLLA 68 (95)
T ss_dssp HHHHHHHH--HTTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 34444443 67788999999999999999999988765
No 355
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=37.82 E-value=33 Score=29.94 Aligned_cols=48 Identities=8% Similarity=-0.035 Sum_probs=38.3
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
...++...||+.++++..-+-..|-+|...|.|.-.-|..++ .|.+++
T Consensus 60 ~~~~t~~eLa~~l~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~ 110 (207)
T 2fxa_A 60 LNGASISEIAKFGVMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTE 110 (207)
T ss_dssp HTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTSEEEECC------CEEEECH
T ss_pred CCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECH
Confidence 357999999999999999999999999999999988877666 455543
No 356
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=37.71 E-value=76 Score=28.36 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..+.+.++..-...-..|=.++ +...||+.+|+|..-|.+-+..|..+|.|..+ +..|+.+..
T Consensus 13 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~ 76 (243)
T 2wv0_A 13 YQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRL--KGRGTFVSK 76 (243)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--TTSCEEECC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEEe--CCCeEEEeC
Confidence 4455555555555556677899 89999999999999999999999999998743 566776643
No 357
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=37.59 E-value=1.8e+02 Score=24.20 Aligned_cols=63 Identities=17% Similarity=0.154 Sum_probs=45.8
Q ss_pred HHHHHHHHHhcc---cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHh
Q 014555 130 EARLAALLMESR---EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSLRNLPKAKAALTAARTA 196 (422)
Q Consensus 130 ~~~La~~~~~~g---~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~ 196 (422)
.-++|-.+...+ +++++..+|+++.+.- .+...-|....-+-.|+..+|+.+|+.+++.+..+
T Consensus 35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~i 100 (152)
T 1pc2_A 35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 446677777766 7889999999987642 12233454455566789999999999999888766
No 358
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=37.46 E-value=33 Score=27.60 Aligned_cols=43 Identities=7% Similarity=-0.002 Sum_probs=27.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
..++..+||+.+|++..-+-..|.+|...|.|.-.-|..++-.
T Consensus 56 ~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~ 98 (148)
T 3jw4_A 56 SGIIQKDLAQFFGRRGASITSMLQGLEKKGYIERRIPENNARQ 98 (148)
T ss_dssp TCCCHHHHHHC------CHHHHHHHHHHTTSBCCC--------
T ss_pred CCCCHHHHHHHHCCChhHHHHHHHHHHHCCCEEeeCCCCCchh
Confidence 6799999999999999999999999999999988777666643
No 359
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=36.87 E-value=41 Score=32.89 Aligned_cols=44 Identities=14% Similarity=0.166 Sum_probs=37.8
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
..+++++.....+|-.+||+.+|++..-|-+.+.+|+.+|.|..
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~~tv~~~v~~L~~~gli~~ 85 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHE 85 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEe
Confidence 34556666678899999999999999999999999999998853
No 360
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=36.68 E-value=1.4e+02 Score=22.83 Aligned_cols=35 Identities=17% Similarity=0.200 Sum_probs=31.7
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
..+++.++|+.+|++..-+-+.|.+|...|.+.-.
T Consensus 44 ~~~s~~ela~~l~is~stvsr~l~~Le~~Glv~~~ 78 (119)
T 2lkp_A 44 GPLPVTDLAEAIGMEQSAVSHQLRVLRNLGLVVGD 78 (119)
T ss_dssp CCCCHHHHHHHHSSCHHHHHHHHHHHHHHCSEEEE
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE
Confidence 46899999999999999999999999999988653
No 361
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=36.39 E-value=1.2e+02 Score=23.32 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=34.4
Q ss_pred cccccchhHHHHhC----CChHHHHHHHHhhhhcCCceeeee
Q 014555 341 YSRVEIAHIAELIE----LPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 341 Ys~I~l~~la~~l~----l~~~evE~~l~~mI~~g~i~gkID 378 (422)
...++..+||+.++ ++..-|-..|-+|...|.|.-.-|
T Consensus 22 ~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 22 KKYASANNIIEEIQMQKDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 46799999999999 889999999999999999987666
No 362
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=36.33 E-value=56 Score=26.47 Aligned_cols=43 Identities=12% Similarity=0.176 Sum_probs=37.3
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
+...++.++||+.++++..-+-..|.+|...|.|.=.-|..|+
T Consensus 48 ~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Glv~r~~~~~Dr 90 (147)
T 4b8x_A 48 KSGELPMSKIGERLMVHPTSVTNTVDRLVRSGLVAKRPNPNDG 90 (147)
T ss_dssp GGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECC---
T ss_pred CCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCEEEeecCCcC
Confidence 4567999999999999999999999999999999988888776
No 363
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=36.30 E-value=1.3e+02 Score=22.51 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=31.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
...++.+||+.+|++..-+-+.+..|-.. .+..+-+
T Consensus 40 ~~~~~~ela~~l~is~stvs~hL~~L~~~-lv~~~~~ 75 (99)
T 2zkz_A 40 KALNVTQIIQILKLPQSTVSQHLCKMRGK-VLKRNRQ 75 (99)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHHHHBTT-TBEEEEE
T ss_pred CCcCHHHHHHHHCcCHHHHHHHHHHHHHH-hhhheEe
Confidence 56899999999999999999999999998 8877544
No 364
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=36.23 E-value=42 Score=24.87 Aligned_cols=29 Identities=17% Similarity=0.205 Sum_probs=25.8
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+++.-|...+.++..
T Consensus 42 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 70 (91)
T 2rnj_A 42 AKGYSNQEIASASHITIKTVKTHVSNILS 70 (91)
T ss_dssp HTTCCTTHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56789999999999999999999988764
No 365
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=35.99 E-value=58 Score=28.40 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+..++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..+-.+|.+.-+ +..|+.+.
T Consensus 15 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 76 (218)
T 3sxy_A 15 TKVYNLLKEMILNHELKLGEKLNVRELSEKLGISFTPVRDALLQLATEGLVKVV--PRVGFFVT 76 (218)
T ss_dssp HHHHHHHHHHHHTTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHHTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCceEEc
Confidence 445666666666667788899999999999999999999999999999999654 55566654
No 366
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=35.96 E-value=45 Score=24.29 Aligned_cols=29 Identities=14% Similarity=0.185 Sum_probs=25.6
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|++..-|...+.++..
T Consensus 34 ~~g~s~~eIA~~l~is~~tV~~~l~r~~~ 62 (82)
T 1je8_A 34 AQGLPNKMIARRLDITESTVKVHVKHMLK 62 (82)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 57789999999999999999999887654
No 367
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=35.96 E-value=91 Score=24.02 Aligned_cols=45 Identities=18% Similarity=0.235 Sum_probs=36.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHH
Q 014555 287 KAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQ 332 (422)
Q Consensus 287 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~ 332 (422)
.++...|. +|-......+.+....+..|+-+...++.|.+++...
T Consensus 54 ~~IG~~fg-RDHsTV~ha~~ki~~~~~~d~~l~~~i~~l~~~l~~~ 98 (101)
T 3pvv_A 54 PKIGQAFG-RDHTTVMYAQRKILSEMAERREVFDHVKELTTRIRQR 98 (101)
T ss_dssp HHHHHHTT-CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHC-CCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHhh
Confidence 45677777 7877777778888888999999999999998877643
No 368
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=35.57 E-value=46 Score=26.68 Aligned_cols=36 Identities=11% Similarity=0.077 Sum_probs=31.9
Q ss_pred ccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 344 VEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 344 I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
++.+.||+.+|+++..|.+.|.+++..|-|.=+-|.
T Consensus 52 ps~~~LA~~l~~s~~~V~~~l~~Le~kGlI~~~~~~ 87 (128)
T 2vn2_A 52 PTPAELAERMTVSAAECMEMVRRLLQKGMIAIEEHT 87 (128)
T ss_dssp CCHHHHHHTSSSCHHHHHHHHHHHHHTTSSEECC--
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEEeEE
Confidence 799999999999999999999999999999765553
No 369
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=35.50 E-value=29 Score=24.13 Aligned_cols=29 Identities=0% Similarity=0.164 Sum_probs=26.1
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+|+.-|...+.+++.
T Consensus 23 ~~g~s~~eIA~~lgis~~tV~~~~~ra~~ 51 (68)
T 2p7v_B 23 NTDYTLEEVGKQFDVTRERIRQIEAKALR 51 (68)
T ss_dssp SSCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 47899999999999999999999988764
No 370
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=35.34 E-value=48 Score=23.01 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.6
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+++.-|...+.++..
T Consensus 24 ~~g~s~~eIA~~l~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 24 VQDKTTKEIASELFISEKTVRNHISNAMQ 52 (74)
T ss_dssp TTTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 45569999999999999999998887653
No 371
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=34.68 E-value=36 Score=25.08 Aligned_cols=35 Identities=17% Similarity=0.327 Sum_probs=31.8
Q ss_pred ccccccchhHHHHh-CCChHHHHHHHHhhhhcCCce
Q 014555 340 PYSRVEIAHIAELI-ELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 340 pYs~I~l~~la~~l-~l~~~evE~~l~~mI~~g~i~ 374 (422)
+=++.-|.++++.| +..+.+|.+.+..||.+|++.
T Consensus 18 ~KskfYf~D~~k~~P~~k~r~vKK~~~~LV~Eg~le 53 (78)
T 1ucr_A 18 SKSKFYFNDFTDLFPDMKQREVKKILTALVNDEVLE 53 (78)
T ss_dssp HSSCEEHHHHHHHCTTSCHHHHHHHHHHHHHTTSEE
T ss_pred ccccchHHHHHHHccccCHHHHHHHHHHHHhcCceE
Confidence 45688899999999 999999999999999999884
No 372
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=34.63 E-value=91 Score=27.16 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
+..++.|+..-+..-+.|=.+++-..||+.||+|..-|-.-|..+-.+|.|.-+ +..|+.+.
T Consensus 19 ~~v~~~l~~~I~~g~l~pG~~L~E~~La~~lgVSRtpVREAl~~L~~eGlv~~~--~~~G~~V~ 80 (222)
T 3ihu_A 19 DTVFFGIMSGLELGTFVPGQRLVETDLVAHFGVGRNSVREALQRLAAEGIVDLQ--RHRGAVIR 80 (222)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEC--STTCEEEC
T ss_pred HHHHHHHHHHHHhCCCCCCCccCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--cCCCeEEe
Confidence 456667777777777788899999999999999999999999999999999754 45566554
No 373
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=34.55 E-value=50 Score=23.35 Aligned_cols=29 Identities=14% Similarity=0.123 Sum_probs=25.7
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+..+||+.+|+++.-|...+.++..
T Consensus 29 ~~g~s~~eIA~~l~is~~tV~~~~~r~~~ 57 (79)
T 1x3u_A 29 VAGLPNKSIAYDLDISPRTVEVHRANVMA 57 (79)
T ss_dssp TTTCCHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 67789999999999999999999888764
No 374
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=34.54 E-value=2.9e+02 Score=28.83 Aligned_cols=119 Identities=9% Similarity=0.093 Sum_probs=65.5
Q ss_pred HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCC-
Q 014555 23 SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPG- 101 (422)
Q Consensus 23 ~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~- 101 (422)
+..|+.|..+++.+. +++ -....+.+.+..+-+.|.+++...++..... -..+-.++++.+...-..++
T Consensus 423 ~G~i~~~~~li~l~d--~~~--~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~------~d~vl~lln~~Ls~~l~~~~~ 492 (661)
T 2qx5_A 423 PGVIEERQPLLHVRD--EKE--FLHTITEQAARRADEDGRIYDSILLYQLAEE------YDIVITLVNSLLSDTLSASDL 492 (661)
T ss_dssp CCHHHHTCGGGTCSC--HHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------HHHHHHHHHHHHHHHHHHSCT
T ss_pred cchHHHhhccccccc--HHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHhcC------HHHHHHHHHHHHHHHhccccc
Confidence 466666666666532 111 2455667777788888988888877755442 13333444444443322221
Q ss_pred -C---------hhHHHHHHHHHHHHHHhc----------chhHHhhHHHHHHHHHH--HhcccHHHHHHHHHHH
Q 014555 102 -T---------SELQIALCKEMVQWTRAE----------KRTFLRQRVEARLAALL--MESREYTEALTLLTSL 153 (422)
Q Consensus 102 -~---------~~~~~~l~~~~i~~~~~~----------~r~~lr~~l~~~La~~~--~~~g~~~~A~~~l~~l 153 (422)
. .+....+..++.+.-..+ .+.-++. -++++.++ ...|+|+.|++.++++
T Consensus 493 ~~~~~~~~~~~~~~l~~la~~i~~~y~~~~~~~~~~~~~~~~t~~l--Ll~l~~f~~~~~~g~~~~AL~~i~~L 564 (661)
T 2qx5_A 493 DQPLVGPDDNSETNPVLLARRMASIYFDNAGISRQIHVKNKEICML--LLNISSIRELYFNKQWQETLSQMELL 564 (661)
T ss_dssp TSCSSCSSCCTTTCHHHHHHHHHHHHTTCHHHHTTSCHHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred ccccccccccccccHHHHHHHHHHHHhcCchhhhhccHHHHHHHHH--HHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 0 112345555555543222 1122233 34566665 7789999999888775
No 375
>2cru_A Programmed cell death protein 5; three helix bundle, apoptosis, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.6.1 PDB: 2k6b_A
Probab=34.13 E-value=18 Score=29.13 Aligned_cols=49 Identities=18% Similarity=0.304 Sum_probs=37.3
Q ss_pred HHHHHHHHHhhcccccccchhHHHHhCCC--hHHHHHHHHhhhhcCCceeeee
Q 014555 328 TLLEQNLCRLIEPYSRVEIAHIAELIELP--IDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 328 ~i~~~~l~~i~~pYs~I~l~~la~~l~l~--~~evE~~l~~mI~~g~i~gkID 378 (422)
..+...|.+++.|=-+=.|.+|+=. =| ...||..|.+|...|.|.++||
T Consensus 37 e~r~~iL~qiLtpeAreRL~rI~lV--KPEkA~~VE~~LI~lAq~Gqi~~kIt 87 (118)
T 2cru_A 37 EMRNSILAQVLDQSARARLSNLALV--KPEKTKAVENYLIQMARYGQLSEKVS 87 (118)
T ss_dssp HHHHHHHHHHBCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHTCCCSCBC
T ss_pred HHHHHHHHHHcCHHHHHHHHhhhhc--CHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 4456778888888766666666531 22 4789999999999999999986
No 376
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=33.97 E-value=49 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.174 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhc
Q 014555 325 LYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILD 370 (422)
Q Consensus 325 L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~ 370 (422)
+.+.=|.+.|++++.....++.++||+.||+|++-+.+-+..+=.-
T Consensus 8 m~k~eR~~~i~~~l~~~~~~~~~~la~~~~vs~~TiRrDl~eL~~~ 53 (190)
T 4a0z_A 8 LKKDKRREAIRQQIDSNPFITDHELSDLFQVSIQTIRLDRTYLNIP 53 (190)
T ss_dssp HHHHHHHHHHHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHTCC
T ss_pred cCHHHHHHHHHHHHHHCCCEeHHHHHHHHCCCHHHHHHHHHHhcCc
Confidence 3455567888889988999999999999999999988887766433
No 377
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=33.88 E-value=3.3e+02 Score=26.19 Aligned_cols=92 Identities=15% Similarity=0.060 Sum_probs=53.8
Q ss_pred HHHHHHHHHhcc---cHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHhh----CCHHHHHHHHHHHHHhhccCCC
Q 014555 130 EARLAALLMESR---EYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFSL----RNLPKAKAALTAARTAANAIYV 202 (422)
Q Consensus 130 ~~~La~~~~~~g---~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~~----~n~~kak~~l~~a~~~~~~i~~ 202 (422)
...|+.+|...| ++.+|++.+...... .+.. ...+..-..+|... +|+.+|...+.++. . .
T Consensus 179 ~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~----g~~~--a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa--~-g--- 246 (452)
T 3e4b_A 179 YVELATVYQKKQQPEQQAELLKQMEAGVSR----GTVT--AQRVDSVARVLGDATLGTPDEKTAQALLEKIA--P-G--- 246 (452)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHT----TCSC--HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG--G-G---
T ss_pred HHHHHHHHHHcCCcccHHHHHHHHHHHHHC----CCHH--HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc--C-C---
Confidence 457888888888 888888877765421 1111 11111123344333 68999988888774 1 1
Q ss_pred CchhhHHHHHHHHHHh--chhhcHHHHHHHHHHHhh
Q 014555 203 PPAQQGTIDLQSGILH--AEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 203 ~~~i~a~i~~~~g~~~--~~~~dy~~A~~~f~ea~~ 236 (422)
+|..+ ...+-.++ ...+|+.+|..+|-.+.+
T Consensus 247 ~~~a~---~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~ 279 (452)
T 3e4b_A 247 YPASW---VSLAQLLYDFPELGDVEQMMKYLDNGRA 279 (452)
T ss_dssp STHHH---HHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred CHHHH---HHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence 22222 22222223 458899999998888864
No 378
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=33.81 E-value=1.7e+02 Score=23.54 Aligned_cols=64 Identities=13% Similarity=-0.062 Sum_probs=48.4
Q ss_pred chHHHHHhhcC-Ch---HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 10 TDSIAQAKEAS-NP---SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 10 ~~~~ak~~~~~-~~---~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
...-|-+|..+ ++ ..+|..|..+.+... .+ ....+++.++--+++.|+|+.-...+..+...-+
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~--p~---~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS--KE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC--HH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cc---hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence 44456666655 34 459999999999642 11 4567899999999999999999999998887444
No 379
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=33.77 E-value=10 Score=31.87 Aligned_cols=42 Identities=7% Similarity=0.144 Sum_probs=36.9
Q ss_pred HHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
|+..+.|-.+++...||+.+|+|...|-+-+.+|..+|.|.+
T Consensus 18 Il~~l~~~~~ls~~eLa~~lgvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 18 ILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp HHHHHHHCSSCCTTGGGTSSSCCTTTSSSTHHHHHHHTSEEE
T ss_pred HHHHHHhCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCcEEE
Confidence 333567888999999999999999999999999999999975
No 380
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=33.66 E-value=81 Score=21.82 Aligned_cols=43 Identities=14% Similarity=0.272 Sum_probs=35.3
Q ss_pred HHHHhhccc-ccccchhHHHHhCCChHHHHHHHHhhhhcCCcee
Q 014555 333 NLCRLIEPY-SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 333 ~l~~i~~pY-s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~g 375 (422)
+|+..+.+. .-++-.++|..||+|.+....-|-++..+|.+.-
T Consensus 7 aLLall~s~~QGMTaGEVAA~f~w~Le~ar~aLeqLf~~G~LRK 50 (68)
T 3i71_A 7 ELLALLTSVRQGMTAGEVAAHFGWPLEKARNALEQLFSAGTLRK 50 (68)
T ss_dssp HHHHHHHHCTTCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHhccccHHHHHHHhCCcHHHHHHHHHHHHhcchhhh
Confidence 344444444 5788999999999999999999999999999864
No 381
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=33.65 E-value=60 Score=28.94 Aligned_cols=64 Identities=6% Similarity=0.067 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
..+++.|+..-...-..|=.++ +-..||+.+|+|..-|-+-+..+..+|.|..+ +..|+.+...
T Consensus 12 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~~--~g~G~~V~~~ 76 (236)
T 3edp_A 12 EVIASKIKDSINRDEYKTGMLMPNETALQEIYSSSRTTIRRAVDLLVEEGLVVRK--NGVGLYVQPK 76 (236)
T ss_dssp HHHHHHHHHHHHTTSSCCCC--CCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEECCC
T ss_pred HHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCCEEEE--CCceEEEccC
Confidence 4455555555555556778899 89999999999999999999999999998764 6667766543
No 382
>2k9m_A RNA polymerase sigma factor RPON; core binding domain, transcription; NMR {Aquifex aeolicus}
Probab=33.60 E-value=28 Score=28.38 Aligned_cols=26 Identities=12% Similarity=0.374 Sum_probs=24.1
Q ss_pred cccccchhHHHHhCCChHHHHHHHHh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQ 366 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~ 366 (422)
|-+.+++.||+.+|++.++||..+..
T Consensus 37 YL~~~l~eia~~l~~~~~eve~vL~~ 62 (130)
T 2k9m_A 37 FLSKSVEEISDVLRCSVEELEKVRQK 62 (130)
T ss_dssp SBSSCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHcCCCHHHHHHHHHH
Confidence 89999999999999999999998764
No 383
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=32.94 E-value=67 Score=26.84 Aligned_cols=64 Identities=14% Similarity=-0.047 Sum_probs=47.1
Q ss_pred chHHHHHhhcCC-h---HHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhc
Q 014555 10 TDSIAQAKEASN-P---SDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFS 78 (422)
Q Consensus 10 ~~~~ak~~~~~~-~---~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 78 (422)
...-|-.|..++ + .++|..|..+++.+. .+ ....+++.++--+++.|+++.-.+++..+...-+
T Consensus 35 ~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~--p~---~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 35 QFEYAWCLVRSKYNDDIRKGIVLLEELLPKGS--KE---EQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC--HH---HHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC--cc---chHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 333455565553 3 599999999998651 11 3456899999999999999999999888886433
No 384
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=32.73 E-value=1.8e+02 Score=26.83 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=45.4
Q ss_pred HhhcCChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcc
Q 014555 16 AKEASNPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSL 79 (422)
Q Consensus 16 ~~~~~~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~ 79 (422)
-++..++++||+.+..-++..+.+.+ .+| .++++++=.|+|+....++..+.+..+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~da~-~R~------~LfqLLcv~G~w~RA~~QL~~~a~l~p~ 63 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPKDAS-LRS------SFIELLCIDGDFERADEQLMQSIKLFPE 63 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTTCHH-HHH------HHHHHHHHHTCHHHHHHHHHHHHHHCGG
T ss_pred HHhCCCHHHHHHHHHHHHHhCCcCHH-HHH------HHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 35666799999999999998776643 332 4679999999999999999888876553
No 385
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=32.68 E-value=93 Score=22.25 Aligned_cols=43 Identities=12% Similarity=0.138 Sum_probs=35.7
Q ss_pred HHHHhhccc--ccccchhHHHHh-----CCChHHHHHHHHhhhhcCCcee
Q 014555 333 NLCRLIEPY--SRVEIAHIAELI-----ELPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 333 ~l~~i~~pY--s~I~l~~la~~l-----~l~~~evE~~l~~mI~~g~i~g 375 (422)
.|+.++... ..++..+|++.+ +++..-|-+.|..|...|.|.-
T Consensus 21 ~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~ 70 (83)
T 2fu4_A 21 KILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTR 70 (83)
T ss_dssp HHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEE
Confidence 445555433 579999999999 9999999999999999999874
No 386
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=31.23 E-value=3.9e+02 Score=26.26 Aligned_cols=118 Identities=7% Similarity=-0.027 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc------------------------
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDD------------------------ 162 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~------------------------ 162 (422)
..+++.++..+.....+|+ ..+.++...|+.++|.+++..-+.. ..+..
T Consensus 199 ~~~ye~al~~~p~~~~lW~------~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~ 271 (493)
T 2uy1_A 199 HFIHNYILDSFYYAEEVYF------FYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSM 271 (493)
T ss_dssp HHHHHHHHHHTTTCHHHHH------HHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC-
T ss_pred HHHHHHHHHcCCCCHHHHH------HHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHh
Confidence 3567777765444567787 5678888999999999888876654 22110
Q ss_pred ----------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch-hhcHHHHHHHH
Q 014555 163 ----------KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE-EKDYKTAYSYF 231 (422)
Q Consensus 163 ----------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~-~~dy~~A~~~f 231 (422)
......+++.-+++....+++.+|+.++.+| .. ++ ....+....+.+-.. .+++..|...|
T Consensus 272 ~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~------~~-~~~~v~i~~A~lE~~~~~d~~~ar~if 343 (493)
T 2uy1_A 272 GEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN------EG-VGPHVFIYCAFIEYYATGSRATPYNIF 343 (493)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT------SC-CCHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred hccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC------CC-CChHHHHHHHHHHHHHCCChHHHHHHH
Confidence 0000122233333444567889999999988 22 11 122233334444333 33688898888
Q ss_pred HHHhhhhh
Q 014555 232 FEAFEAFN 239 (422)
Q Consensus 232 ~ea~~~~~ 239 (422)
-.+...|.
T Consensus 344 e~al~~~~ 351 (493)
T 2uy1_A 344 SSGLLKHP 351 (493)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 88888774
No 387
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=30.89 E-value=2e+02 Score=22.76 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=44.7
Q ss_pred ChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHH-----hCCChHHHHHHHHhhhhcCCceeeeec
Q 014555 315 DPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAEL-----IELPIDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 315 D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~-----l~l~~~evE~~l~~mI~~g~i~gkIDq 379 (422)
|+.+......+.+......++.++. ....--.|.+. ++++...+-..|.+|-.+|.|...-+.
T Consensus 7 ~~~~~~~~~~l~~g~l~~~IL~lL~--~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~ 74 (123)
T 3ri2_A 7 DDIVSSMVLELRRGTLVMLVLSQLR--EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDN 74 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT--SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHc--CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEecc
Confidence 3444455566777777777777775 33444444444 588999999999999999999987644
No 388
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=30.71 E-value=2.6e+02 Score=26.68 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=31.8
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEE
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCL 384 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v 384 (422)
.++.+.+++.+|++..-+.+.|.+|...|.|.- +....+.+
T Consensus 311 ~~t~~~~~~~~gvS~~Ta~r~L~~L~e~GiL~~-~~~gR~~~ 351 (373)
T 2qc0_A 311 YCRIQNLVESGLAKRQTASVYLKQLCDIGVLEE-VQSGKEKL 351 (373)
T ss_dssp EEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCEE-C--CCSCE
T ss_pred cccHHHHHHHhCCCHHHHHHHHHHHHHCCcEEE-ecCCCceE
Confidence 356678999999999999999999999999963 33344433
No 389
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=30.62 E-value=78 Score=28.92 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~ 387 (422)
..+++.|+..-...-..|=.++ +-..||+.+|++..-|-+-+..+..+|.|.. -+..|+.+..
T Consensus 32 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~G~i~~--~~g~G~~V~~ 95 (272)
T 3eet_A 32 LRVAGDLRKKIVDGSLPPHTRLPSQARIREEYGVSDTVALEARKVLMAEGLVEG--RSGSGTYVRE 95 (272)
T ss_dssp HHHHHHHHHHHHHTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--CCC--EEECC
T ss_pred HHHHHHHHHHHHcCCCCCcCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEE--ecCceEEEec
Confidence 4455555555555566778899 8999999999999999999999999999854 3445665543
No 390
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=30.01 E-value=50 Score=27.95 Aligned_cols=42 Identities=7% Similarity=0.203 Sum_probs=34.4
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.++-.+||..+|++.+-+-+.+.+|-.+|.|.- ..|.+.+.+
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 208 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGRILKMLEDQNLISA----HGKTIVVYG 208 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEEC
T ss_pred ccCHHHHHHHhCCcHHHHHHHHHHHHHCCcEEe----CCCEEEEEe
Confidence 678899999999999999999999999988752 345555544
No 391
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.84 E-value=2.3e+02 Score=27.17 Aligned_cols=58 Identities=14% Similarity=0.111 Sum_probs=44.6
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhcc--chhHHHHHHHHHHHHHhhCCHHHHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVRRLDD--KLLLVDIDLLESKLHFSLRNLPKAK 187 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~--~~~~~e~~l~~~~~~~~~~n~~kak 187 (422)
.+..+.+|+..||..+|-+.+.++...+...++ ......+|...+.+|...+++..+.
T Consensus 130 ~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y 189 (393)
T 4b4t_O 130 DSEIARTYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFY 189 (393)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 448899999999999999999888766665543 4456667777778888888887653
No 392
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=29.80 E-value=2.5e+02 Score=23.53 Aligned_cols=100 Identities=21% Similarity=0.322 Sum_probs=60.6
Q ss_pred HHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHHHHHHHHHHHHhhcCCCC-hhH
Q 014555 27 SMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKTAKIVRGIIDAVAKIPGT-SEL 105 (422)
Q Consensus 27 ~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~~k~v~~~l~~~~~~~~~-~~~ 105 (422)
..|+++++.... ++++..-+.++.++. .+..+.+........+.. | ....++++.+++.+. |+. ...
T Consensus 20 ~~L~~Lirs~~P--eDL~~AN~LiK~m~~--~d~~r~e~~~k~~seLe~----V--~~nv~LL~EML~~~~--pg~~~~~ 87 (158)
T 1naf_A 20 KMLARLLKSSHP--EDLRAANKLIKEMVQ--EDQKRMEKISKRVNAIEE----V--NNNVKLLTEMVMSHS--QGGAAAG 87 (158)
T ss_dssp HHHHHHHSSCST--THHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH----H--HHHHHHHHHHHHHTT--TC-----
T ss_pred HHHHHHHhcCCh--hhHHHHHHHHHHHhc--cchhhHHHHHHHHHHHHH----H--HHHHHHHHHHHHhcC--CCcCCCc
Confidence 378889987542 358888888888886 344445555555554443 2 234678888888875 332 122
Q ss_pred -HHHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHH
Q 014555 106 -QIALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEAL 147 (422)
Q Consensus 106 -~~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~ 147 (422)
..+++.++.+.|++- +-++.++-.+.++-++++
T Consensus 88 ~d~Ell~eL~~~Ck~~---------qp~i~~Li~e~~ddee~L 121 (158)
T 1naf_A 88 SSEDLMKELYQRCERM---------RPTLFRLASDTEDNDEAL 121 (158)
T ss_dssp CCTTHHHHHHHHHHTH---------HHHHHHHHHHCCSCHHHH
T ss_pred ccHHHHHHHHHHHHHH---------HHHHHHHHHHccCCHHHH
Confidence 347888888888643 335555555655545444
No 393
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=29.76 E-value=3.4e+02 Score=28.74 Aligned_cols=87 Identities=11% Similarity=0.154 Sum_probs=50.8
Q ss_pred cHHHHHHHHHHHHHHHhhhc------c------chhHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHhhccCCCCchhhHH
Q 014555 142 EYTEALTLLTSLVKEVRRLD------D------KLLLVDIDLLESKLHFSLRNLPKAKAALTAARTAANAIYVPPAQQGT 209 (422)
Q Consensus 142 ~~~~A~~~l~~l~~e~~~~~------~------~~~~~e~~l~~~~~~~~~~n~~kak~~l~~a~~~~~~i~~~~~i~a~ 209 (422)
+--+|..++.+.++++.... + .....++...|++.++.+|++.-|-.+-.+|-..+ |.....=
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-----PseF~tW 374 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-----LDSFESW 374 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----SSCHHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-----chhhHHH
Confidence 44567777776665543210 1 01223566779999999999988866655554333 2222211
Q ss_pred HHHHHHHHhchhhcHHHHHHHHHHHhh
Q 014555 210 IDLQSGILHAEEKDYKTAYSYFFEAFE 236 (422)
Q Consensus 210 i~~~~g~~~~~~~dy~~A~~~f~ea~~ 236 (422)
+ .-+..|..-+||+.|. ..+.+|.
T Consensus 375 ~--~La~vYi~l~d~e~AL-LtLNScP 398 (754)
T 4gns_B 375 Y--NLARCHIKKEEYEKAL-FAINSMP 398 (754)
T ss_dssp H--HHHHHHHHTTCHHHHH-HHHHHSC
T ss_pred H--HHHHHHHHhccHHHHH-HHHhcCC
Confidence 1 2345567789999887 4555553
No 394
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=29.75 E-value=50 Score=28.36 Aligned_cols=45 Identities=7% Similarity=0.031 Sum_probs=36.6
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~ 390 (422)
-.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.+++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~~ 221 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSRIMHRLGDEGIIH----LDGREISILDRE 221 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHHHHHHHHHHTSEE----ESSSCEEESCST
T ss_pred ecCCHHHHHHHhCCCHHHHHHHHHHHHHCCcEE----ecCCEEEEeCHH
Confidence 457889999999999999999999999999884 235666665543
No 395
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=29.41 E-value=62 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=25.2
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
+.-.+...||+.+|+++.-|...+.++..
T Consensus 51 ~~g~s~~eIA~~lgis~~tV~~~l~ra~~ 79 (92)
T 3hug_A 51 YRGWSTAQIATDLGIAEGTVKSRLHYAVR 79 (92)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 56779999999999999999988887653
No 396
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=29.17 E-value=73 Score=26.76 Aligned_cols=42 Identities=10% Similarity=0.157 Sum_probs=34.4
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.++-.+||..+|++.+-+-+.+.+|-.+|.|.- ..|.|.+.+
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d 205 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRVLKSLEEQGLVHV----KGKTMVVFG 205 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEEET
T ss_pred ccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEe----cCCEEEEEe
Confidence 578899999999999999999999999998742 245555544
No 397
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=29.03 E-value=3.6e+02 Score=25.12 Aligned_cols=61 Identities=10% Similarity=-0.075 Sum_probs=42.7
Q ss_pred HHHHHh-----hCCHHHHHHHHHHHHHhhccCCCCchhhHHHHHHHHHHhch-hhcHHHHHHHHHHHhhhhhc
Q 014555 174 SKLHFS-----LRNLPKAKAALTAARTAANAIYVPPAQQGTIDLQSGILHAE-EKDYKTAYSYFFEAFEAFNA 240 (422)
Q Consensus 174 ~~~~~~-----~~n~~kak~~l~~a~~~~~~i~~~~~i~a~i~~~~g~~~~~-~~dy~~A~~~f~ea~~~~~~ 240 (422)
.-+|.. .||..+|+..+++|..+... . ....+...|.+++. .+|+..|..+|-.+......
T Consensus 206 G~lY~~vPp~~gGd~ekA~~~ferAL~LnP~-----~-~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 206 TKFYAAAPESFGGGMEKAHTAFEHLTRYCSA-----H-DPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHSCTTTTCCHHHHHHHHHHHHHHCCT-----T-CSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHhCCCccCCCHHHHHHHHHHHHHhCCC-----C-CchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 456666 49999999999999888531 1 11224446676666 59999999988888764443
No 398
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=28.75 E-value=1e+02 Score=27.26 Aligned_cols=62 Identities=15% Similarity=0.226 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|+..-+..-++|=.+++-..||+.||+|..-|-.-|..+-.+|.|.-+ +..|+.+.
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgVSRtpVREAL~~L~~eGlv~~~--~~~G~~V~ 92 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAALDVSRNTVREAFQILIEDRLVAHE--LNRGVFVR 92 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE--TTTEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEe--CCCeeEEe
Confidence 446666666666667788899999999999999999999999999999998643 45566554
No 399
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=28.58 E-value=1.4e+02 Score=30.35 Aligned_cols=68 Identities=21% Similarity=0.215 Sum_probs=46.7
Q ss_pred HHHHHHHHhHHhhhcChhHHHhHHHHHHHHHHHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 300 LFETALRDFKAQLEEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 300 ~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
.|+++...++.--..||-++..+..-...++.-++..+..-|.. ....-.+-+..+++++|..|.++.
T Consensus 496 ~Fee~~~~q~~w~vpD~~LR~~Lr~~i~~~v~P~Y~~F~~ry~~-~~k~~~KyiKytpe~le~~l~~L~ 563 (564)
T 2b1e_A 496 GFEDLVSKTKQYKLSDPSLKVTLKSEIISLVMPMYERFYSRYKD-SFKNPRKHIKYTPDELTTVLNQLV 563 (564)
T ss_dssp HHHHHHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GSSSGGGTCSCCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcccCcCHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ccCCCCCcccCCHHHHHHHHHHhc
Confidence 45555555544445799988666655555556667777777776 334456667889999999998874
No 400
>1eij_A Hypothetical protein MTH1615; beta-helix, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: a.5.6.1
Probab=28.53 E-value=30 Score=25.74 Aligned_cols=46 Identities=17% Similarity=0.409 Sum_probs=29.9
Q ss_pred HHHHHhhcccccccchhHHHHhCCC--hHHHHHHHHhhhhcCCceeeeec
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELP--IDHVEKKLSQMILDKKFAGTLDQ 379 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~--~~evE~~l~~mI~~g~i~gkIDq 379 (422)
..|.++..|=-+=.|++|+ +-=| .+.||..|.+|...|.|.|+||.
T Consensus 11 ~iL~qiL~~eAreRL~rI~--lvKPe~A~~VE~~Li~lAq~Gqi~~ki~e 58 (80)
T 1eij_A 11 QIMMQILTPEARSRLANLR--LTRPDFVEQIELQLIQLAQMGRVRSKITD 58 (80)
T ss_dssp HHHTTTCCHHHHHHHHHHT--TTCHHHHHHHHHHHHHHHHCCSSCCCCCH
T ss_pred HHHHHHcCHHHHHHHHhhh--hcCHHHHHHHHHHHHHHHHcCCCCCCcCH
Confidence 3445555554444444433 1112 36899999999999999999863
No 401
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=28.35 E-value=48 Score=25.26 Aligned_cols=32 Identities=19% Similarity=0.186 Sum_probs=23.9
Q ss_pred HHHHHhhcccccccchhHHHHhCCChHHHHHHH
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELPIDHVEKKL 364 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l 364 (422)
..|..++.... +++.++|+.+|+|..-|-+.|
T Consensus 10 ~~I~~~l~~~~-~ti~dlA~~~gVS~~TVsR~L 41 (93)
T 2l0k_A 10 IKIGKYIVETK-KTVRVIAKEFGVSKSTVHKDL 41 (93)
T ss_dssp HHHHHHHHHHC-CCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCCCHHHHHHHH
Confidence 34445554433 899999999999988887766
No 402
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=28.19 E-value=2.8e+02 Score=29.39 Aligned_cols=41 Identities=17% Similarity=0.300 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhcchhHHhhHHHHHHHHHHHhcccHHHHHHHHHHH
Q 014555 107 IALCKEMVQWTRAEKRTFLRQRVEARLAALLMESREYTEALTLLTSL 153 (422)
Q Consensus 107 ~~l~~~~i~~~~~~~r~~lr~~l~~~La~~~~~~g~~~~A~~~l~~l 153 (422)
+++-+..+.-+-++=+.|. +||+.|...|||+.|+-.|+.+
T Consensus 357 L~~Ak~AV~~aPseF~tW~------~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 357 LGVSNTSTELALDSFESWY------NLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHCSSCHHHHH------HHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHhcCchhhHHHH------HHHHHHHHhccHHHHHHHHhcC
Confidence 4444444444445567777 8999999999999999999887
No 403
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=27.78 E-value=92 Score=27.23 Aligned_cols=54 Identities=11% Similarity=0.170 Sum_probs=43.5
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.|..+.+....++..+||+.+|++..-|-+.|.+|...|.|.-.- ++.|.+++.
T Consensus 10 ~I~~l~~~~~~~~~~~lA~~l~vs~~tvs~~l~~Le~~GlV~r~~---~~~i~LT~~ 63 (214)
T 3hrs_A 10 CLYELGTRHNKITNKEIAQLMQVSPPAVTEMMKKLLAEELLIKDK---KAGYLLTDL 63 (214)
T ss_dssp HHHHTTSSCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEET---TTEEEECHH
T ss_pred HHHHHHhcCCCcCHHHHHHHHCCChhHHHHHHHHHHHCCCEEEec---CCCeEECHH
Confidence 344455566789999999999999999999999999999987643 367777654
No 404
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=27.70 E-value=71 Score=23.83 Aligned_cols=28 Identities=18% Similarity=0.243 Sum_probs=24.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
.-.+..+||+.+|+++.-|+..+.++..
T Consensus 43 ~G~s~~eIA~~L~iS~~TV~~~~~~i~~ 70 (90)
T 3ulq_B 43 KGFTNQEIADALHLSKRSIEYSLTSIFN 70 (90)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6678999999999999999999988754
No 405
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=27.36 E-value=2.1e+02 Score=24.79 Aligned_cols=38 Identities=5% Similarity=0.017 Sum_probs=35.0
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeee
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkID 378 (422)
....+...||+.+|++..-+-..|..|...|.|...-+
T Consensus 26 ~~~~s~~eLa~~l~is~stvs~hLk~Le~~GLV~~~~~ 63 (202)
T 2p4w_A 26 KRPYFVSELSRELGVGQKAVLEHLRILEEAGLIESRVE 63 (202)
T ss_dssp HSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred hCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCceEEEee
Confidence 35689999999999999999999999999999998766
No 406
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=27.15 E-value=85 Score=27.94 Aligned_cols=61 Identities=8% Similarity=0.096 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 324 SLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 324 ~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
.+.+.|+..-...-..|=.++ +-..||+.+|++..-|-+-+..+..+|.|.- -+..|+.+.
T Consensus 9 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~~vSr~tvr~Al~~L~~~g~i~~--~~g~G~~V~ 70 (239)
T 3bwg_A 9 QIATEIETYIEEHQLQQGDKLPVLETLMAQFEVSKSTITKSLELLEQKGAIFQ--VRGSGIFVR 70 (239)
T ss_dssp HHHHHHHHHHHHTTCCTTCBCCCHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE--ETTTEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--eCCceEEEe
Confidence 355555555445566777899 8999999999999999999999999999964 366677654
No 407
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=27.14 E-value=77 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.057 Sum_probs=36.4
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDP 390 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~ 390 (422)
-.++-.+||..+|++.+-+-+.+.+|..+|.|.- ..|.|.+.+++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR~l~~L~~~GlI~~----~~~~i~I~d~~ 236 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTRLLGDLREKKMISI----HKKKITVHKPV 236 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEECC--
T ss_pred ccCCHHHHHHHHCCcHHHHHHHHHHHHHCCCEEE----cCCEEEECCHH
Confidence 3578899999999999999999999999998752 35777776654
No 408
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=27.13 E-value=1.2e+02 Score=22.84 Aligned_cols=43 Identities=26% Similarity=0.270 Sum_probs=32.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhHHhhhcChhHHHhHHHHHHHH
Q 014555 287 KAVADAHSKRSLKLFETALRDFKAQLEEDPIVHRHLSSLYDTL 329 (422)
Q Consensus 287 ~~L~~af~~~dl~~f~~~l~~~~~~l~~D~~l~~~~~~L~~~i 329 (422)
.++...|-.+|-......+.+....+..||.+...++.|.+.+
T Consensus 50 ~~IG~~fggrdHsTV~ha~~ki~~~~~~d~~~~~~i~~l~~~l 92 (94)
T 1j1v_A 50 PEIGDAFGGRDHTTVLHACRKIEQLREESHDIKEDFSNLIRTL 92 (94)
T ss_dssp HHHHHHTTSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHH
Confidence 4466667666777777777777778889999988888887765
No 409
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=26.91 E-value=95 Score=27.25 Aligned_cols=62 Identities=13% Similarity=0.116 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..+++.|++.-+..-..|=.++ +-..||+.||+|..-|-+-|..+..+|.|.- -+..|+.+.
T Consensus 10 ~~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~gVSR~tVReAL~~L~~eGlv~~--~~g~G~~V~ 72 (239)
T 1hw1_A 10 GFAEEYIIESIWNNRFPPGTILPAERELSELIGVTRTTLREVLQRLARDGWLTI--QHGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHHTTSSCTTSBCCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE--ETTEEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCcEEE--ecCCCcEee
Confidence 3455555555555566788999 7999999999999999999999999999874 355676654
No 410
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=26.87 E-value=76 Score=24.30 Aligned_cols=28 Identities=0% Similarity=0.186 Sum_probs=24.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
...|+.+||+.+|+|..-|...+.+++.
T Consensus 38 e~~s~~EIA~~lgiS~~tVr~~~~rAlk 65 (99)
T 3t72_q 38 TDYTLEEVGKQFDVTRERIRQIEAKALR 65 (99)
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 6789999999999999999998887764
No 411
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=26.51 E-value=74 Score=27.58 Aligned_cols=44 Identities=11% Similarity=0.108 Sum_probs=36.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-.++-.+||+.+|++.+-+-+.+.++..+|.|.- ..|.|.+.++
T Consensus 185 ~~~t~~~lA~~lG~sr~tvsR~l~~l~~~glI~~----~~~~i~I~d~ 228 (232)
T 1zyb_A 185 FKVKMDDLARCLDDTRLNISKTLNELQDNGLIEL----HRKEILIPDA 228 (232)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSCEE----ETTEEEESCG
T ss_pred ecCCHHHHHHHhCCChhHHHHHHHHHHHCCCEEe----cCCEEEEeCh
Confidence 3578899999999999999999999999998852 2456666543
No 412
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=26.46 E-value=50 Score=23.21 Aligned_cols=28 Identities=0% Similarity=0.125 Sum_probs=24.5
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
...+..+||+.+|+|+.-|...+.+.+.
T Consensus 29 ~~~s~~eIA~~l~is~~tV~~~~~ra~~ 56 (73)
T 1ku3_A 29 REHTLEEVGAYFGVTRERIRQIENKALR 56 (73)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6789999999999999999998877653
No 413
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=26.34 E-value=50 Score=21.18 Aligned_cols=25 Identities=12% Similarity=0.264 Sum_probs=20.6
Q ss_pred cccchhHHHHhCCChHHHHHHHHhh
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQM 367 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~m 367 (422)
.+++..+|+.+|++++++-..+.++
T Consensus 2 k~rv~~lAkel~~~~k~l~~~l~~~ 26 (49)
T 1nd9_A 2 DVTIKTLAAERQTSVERLVQQFADA 26 (49)
T ss_dssp EECTTHHHHHHSSSHHHHHHHHHHH
T ss_pred cccHHHHHHHHCcCHHHHHHHHHHc
Confidence 4678999999999998887777654
No 414
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.32 E-value=48 Score=22.73 Aligned_cols=28 Identities=11% Similarity=0.229 Sum_probs=24.3
Q ss_pred cccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 341 YSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 341 Ys~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
+...+...||+.+|+|+.-|...+.++.
T Consensus 29 ~~g~s~~eIA~~lgis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 29 LLGLSYADAAAVCGCPVGTIRSRVARAR 56 (70)
T ss_dssp TSCCCHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4668999999999999999998887765
No 415
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=26.07 E-value=44 Score=20.72 Aligned_cols=28 Identities=11% Similarity=0.103 Sum_probs=23.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
.-++...||+.+|++..-|...+.+.-.
T Consensus 20 ~g~s~~~IA~~lgis~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 20 LNVSLHEMSRKISRSRHCIRVYLKDPVS 47 (51)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHCSTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhhHHh
Confidence 4578999999999999999988866533
No 416
>2fh0_A Hypothetical 16.0 kDa protein in ABF2-CHL12 intergenic region; ensemble, YMR074CP, unknown function; NMR {Saccharomyces cerevisiae}
Probab=25.11 E-value=33 Score=25.54 Aligned_cols=45 Identities=16% Similarity=0.270 Sum_probs=31.1
Q ss_pred HHHHHhhcccccccchhHHHHhCCC--hHHHHHHHHhhhhcCCceeeee
Q 014555 332 QNLCRLIEPYSRVEIAHIAELIELP--IDHVEKKLSQMILDKKFAGTLD 378 (422)
Q Consensus 332 ~~l~~i~~pYs~I~l~~la~~l~l~--~~evE~~l~~mI~~g~i~gkID 378 (422)
..|.+++.|=-+=+|.+|+= -=| ...||..|.+|...|.|.++||
T Consensus 9 ~iL~qiL~~eAreRL~rI~l--vKPe~A~~VE~~Li~lAq~Gqi~~ki~ 55 (81)
T 2fh0_A 9 AAIANFLEPQALERLSRVAL--VRRDRAQAVETYLKKLIATNNVTHKIT 55 (81)
T ss_dssp HHHHTTBCHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHTCCSCCBC
T ss_pred HHHHHHcCHHHHHHHHhhhh--cCHHHHHHHHHHHHHHHHcCCCCCCcC
Confidence 34555666655555555542 112 3689999999999999999886
No 417
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=24.90 E-value=1.4e+02 Score=26.49 Aligned_cols=43 Identities=14% Similarity=0.147 Sum_probs=35.9
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEE
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLII 386 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~ 386 (422)
..||...+|+.+|+++.-+...|-.++.+|.+.-- |++.| +.+
T Consensus 167 g~vt~~~la~~l~ws~~~a~e~L~~~e~~G~l~~D-~~~eg-~~y 209 (218)
T 3cuq_B 167 GSLTSEEFAKLVGMSVLLAKERLLLAEKMGHLCRD-DSVEG-LRF 209 (218)
T ss_dssp SCBCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEE-ESSSC-EEE
T ss_pred CCcCHHHHHHHhCCCHHHHHHHHHHHHHcCCEEEE-CCCCc-eEE
Confidence 56899999999999999999999999999987542 46667 444
No 418
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=24.63 E-value=1.2e+02 Score=22.04 Aligned_cols=42 Identities=7% Similarity=0.262 Sum_probs=27.6
Q ss_pred HHHhhcccccccchhHHHHhC-----------CChHHHHHHHHhhhhcCCcee
Q 014555 334 LCRLIEPYSRVEIAHIAELIE-----------LPIDHVEKKLSQMILDKKFAG 375 (422)
Q Consensus 334 l~~i~~pYs~I~l~~la~~l~-----------l~~~evE~~l~~mI~~g~i~g 375 (422)
|.-.+..+.++++++|...|. ++.++++..|.+++.+|++..
T Consensus 13 I~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~ 65 (74)
T 1ldd_A 13 IEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKY 65 (74)
T ss_dssp HHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEE
Confidence 333444455666666655432 345889999999999998863
No 419
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=24.52 E-value=77 Score=26.91 Aligned_cols=43 Identities=12% Similarity=0.194 Sum_probs=36.4
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 211 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITRMLRYFQVEGLVK----LSRGKITILDS 211 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 67889999999999999999999999999874 34677777553
No 420
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=24.31 E-value=1.9e+02 Score=21.97 Aligned_cols=35 Identities=9% Similarity=0.040 Sum_probs=28.2
Q ss_pred hHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC
Q 014555 348 HIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG 382 (422)
Q Consensus 348 ~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g 382 (422)
.|++.++++..-+-..|.+|..+|.|...-+..+|
T Consensus 31 ~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~ 65 (108)
T 3l7w_A 31 TIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQG 65 (108)
T ss_dssp HHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETT
T ss_pred HHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCC
Confidence 34445789999999999999999999987765444
No 421
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=24.24 E-value=82 Score=29.53 Aligned_cols=44 Identities=9% Similarity=-0.021 Sum_probs=36.9
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
...|+.++..-..++.++||+.||+|..-+.+.+..|-..|.+-
T Consensus 7 ~~~Il~~L~~~~~~s~~eLa~~l~vS~~ti~r~l~~L~~~G~~i 50 (321)
T 1bia_A 7 PLKLIALLANGEFHSGEQLGETLGMSRAAINKHIQTLRDWGVDV 50 (321)
T ss_dssp HHHHHHHHTTSSCBCHHHHHHHHTSCHHHHHHHHHHHHHTTCCC
T ss_pred HHHHHHHHHcCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCCcE
Confidence 34566666666789999999999999999999999998888764
No 422
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=23.98 E-value=1.1e+02 Score=29.57 Aligned_cols=42 Identities=14% Similarity=0.003 Sum_probs=34.1
Q ss_pred HHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 333 NLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 333 ~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.++.++...-.++.+.+++.+|++..-+.+.|.+|+..|.|.
T Consensus 301 ~ll~~l~~~p~~t~~~~~~~~~~S~~TA~r~L~~L~e~GiL~ 342 (373)
T 3eqx_A 301 ELVQVIFEQPYCRIQNLVESGLAKRQTASVYLKQLCDIGVLE 342 (373)
T ss_dssp HHHHHHHHCSEEEHHHHHHTSSSCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHCCCccHHHHHHHhCcCHHHHHHHHHHHHHCCcEE
Confidence 344444433457889999999999999999999999999986
No 423
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=23.80 E-value=70 Score=26.73 Aligned_cols=46 Identities=4% Similarity=0.080 Sum_probs=35.6
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCC---EEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVG---CLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g---~v~~~~ 388 (422)
.++..+||+.+|++..-+-..|.+|...|.|.-.-|..++ .|.+++
T Consensus 86 ~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~ 134 (181)
T 2fbk_A 86 GLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTP 134 (181)
T ss_dssp CBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECH
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECH
Confidence 4999999999999999999999999999999877665554 445543
No 424
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=23.67 E-value=2.2e+02 Score=21.55 Aligned_cols=50 Identities=18% Similarity=0.171 Sum_probs=32.8
Q ss_pred hhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHH
Q 014555 126 RQRVEARLAALLMESREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKL 176 (422)
Q Consensus 126 r~~l~~~La~~~~~~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~ 176 (422)
++|+-+.-|+=+...|+|.+|+-++.++..-+... .-...+++|+.+-|-
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~-~i~ki~~fyl~ec~k 101 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNE-EIKKIASFYLEECRK 101 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCH-HHHHHHHHHHHHHHH
Confidence 35556677778889999999999888875332111 123456677776543
No 425
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A*
Probab=23.26 E-value=1.3e+02 Score=24.79 Aligned_cols=49 Identities=14% Similarity=0.148 Sum_probs=34.0
Q ss_pred HHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Q 014555 24 DAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQL 73 (422)
Q Consensus 24 ~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l 73 (422)
.+.+.|+..-+.+ .++++-+|.++++..+++-+-+.++.+.|.+.+++=
T Consensus 10 ~~v~~ll~~~~~~-~~~~~e~~~~kai~sLvKkLK~~~~Le~L~~AV~s~ 58 (144)
T 1ozj_A 10 PIVKRLLGWKKGE-QNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQ 58 (144)
T ss_dssp HHHHHHHTSCCCS-CCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHHhhhccC-CCcchHHHHHHHHHHHHHHhcccccHHHHHHHHhCC
Confidence 3445555544432 334457899999999999998866788887766653
No 426
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=23.18 E-value=59 Score=23.84 Aligned_cols=28 Identities=0% Similarity=0.134 Sum_probs=25.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
...|..+||+.+|+|+.-|...+.+++.
T Consensus 37 ~~~s~~EIA~~lgis~~tV~~~~~ra~~ 64 (87)
T 1tty_A 37 KPKTLEEVGQYFNVTRERIRQIEVKALR 64 (87)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5789999999999999999999888764
No 427
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=23.03 E-value=1.1e+02 Score=26.17 Aligned_cols=34 Identities=9% Similarity=-0.015 Sum_probs=30.7
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
..|..+||+.+|++..-+-+.|..|-..|.|...
T Consensus 24 ~~s~~eia~~lgl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 24 PPSVREIARRFRITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEECC
T ss_pred CCCHHHHHHHcCCCcHHHHHHHHHHHHCCCEEec
Confidence 4899999999999988899999999999998654
No 428
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=22.76 E-value=1.3e+02 Score=25.24 Aligned_cols=43 Identities=7% Similarity=0.080 Sum_probs=38.7
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
...++.+.+ .-..+..+||+.+|+|-..+...|-.+=.+|.+.
T Consensus 13 k~~ILE~Lk-~G~~~t~~Iak~LGlShg~aq~~Ly~LeREG~V~ 55 (165)
T 2vxz_A 13 LRDILALLA-DGCKTTSLIQQRLGLSHGRAKALIYVLEKEGRVT 55 (165)
T ss_dssp HHHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHTTSCE
T ss_pred HHHHHHHHH-hCCccHHHHHHHhCCcHHHHHHHHHHHHhcCceE
Confidence 456778888 8999999999999999999999999999999885
No 429
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=22.64 E-value=59 Score=27.61 Aligned_cols=44 Identities=16% Similarity=0.189 Sum_probs=37.0
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-.++-.+||..+|++.+-+-+.+.++-.+|.|. ...|.+.+.++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 205 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSRVLHALAEEGVVR----LGPGTVEVREA 205 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 567899999999999999999999999999885 23577777543
No 430
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=22.59 E-value=1.4e+02 Score=26.24 Aligned_cols=65 Identities=11% Similarity=0.065 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHhhcccccc-cchhHHHHhCCChHHHHHHHHhhhhcCCcee--eeecCCCEEEEe
Q 014555 323 SSLYDTLLEQNLCRLIEPYSRV-EIAHIAELIELPIDHVEKKLSQMILDKKFAG--TLDQGVGCLIIF 387 (422)
Q Consensus 323 ~~L~~~i~~~~l~~i~~pYs~I-~l~~la~~l~l~~~evE~~l~~mI~~g~i~g--kIDq~~g~v~~~ 387 (422)
+..++.|+..-+..-++|=.++ +-..||+.||+|..-|-.-|..+-.+|.|.- +-....|+.+..
T Consensus 7 ~~v~~~L~~~I~~g~l~pG~~LpsE~~La~~lgVSRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~ 74 (239)
T 2di3_A 7 ESVMDWVTEELRSGRLKIGDHLPSERALSETLGVSRSSLREALRVLEALGTISTATGSGPRSGTIITA 74 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCBCCCHHHHHHHHTCCHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECC
T ss_pred HHHHHHHHHHHHhCCCCCCCcCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCeEeecccCCCCCceeeC
Confidence 4466666666666677788999 5679999999999999999999999999875 322225766554
No 431
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=22.40 E-value=1.9e+02 Score=23.57 Aligned_cols=76 Identities=9% Similarity=0.008 Sum_probs=49.0
Q ss_pred chHHHHHhhcC----ChHHHHHHHHhhcCCCCCchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHhchhhcccchhHH
Q 014555 10 TDSIAQAKEAS----NPSDAISMLYRVLDDPSSSSEALRVKELAITELSDLLRQENRAQDLCNLLTQLRPFFSLIPKAKT 85 (422)
Q Consensus 10 ~~~~ak~~~~~----~~~~Ai~~l~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~~~~k~~~ 85 (422)
...-|-+|.++ +...+|..|.++.+... + .....++.++--+++.|+++.-...+..+...- |-+.-
T Consensus 43 ~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~--~----~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e---P~N~Q 113 (134)
T 3o48_A 43 RFNYAWGLIKSTDVNDERLGVKILTDIYKEAE--S----RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE---RNNKQ 113 (134)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCG--G----GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---TTCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCc--c----hhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC---CCCHH
Confidence 33445555554 23578888888887442 1 245688899999999999999888888777533 33444
Q ss_pred HHHHHHHHH
Q 014555 86 AKIVRGIID 94 (422)
Q Consensus 86 ~k~v~~~l~ 94 (422)
+..+++.++
T Consensus 114 A~~Lk~~Ie 122 (134)
T 3o48_A 114 VGALKSMVE 122 (134)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 432
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=22.38 E-value=91 Score=24.51 Aligned_cols=34 Identities=9% Similarity=-0.043 Sum_probs=30.1
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceee
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGT 376 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gk 376 (422)
-.+..++|+.+|++...+..++..+...|.+...
T Consensus 20 p~~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~i 53 (121)
T 2pjp_A 20 PWWVRDLAKETGTDEQAMRLTLRQAAQQGIITAI 53 (121)
T ss_dssp CEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEEEe
Confidence 3477799999999999999999999999988653
No 433
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=22.36 E-value=62 Score=27.89 Aligned_cols=44 Identities=7% Similarity=0.061 Sum_probs=36.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-.++-.+||..+|++.+-+-+.+.+|-.+|.|. ...|.+.+.++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 217 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSRVLKRLEAHNILE----VSPRSVTLLDL 217 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----ECSSCEEESCH
T ss_pred cCCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE----ecCCEEEEeCH
Confidence 357889999999999999999999999998875 23566666543
No 434
>3kp1_E D-ornithine aminomutase S component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_E* 3koy_E* 3koz_E* 3kp0_E* 3kox_E*
Probab=22.33 E-value=1.9e+02 Score=23.06 Aligned_cols=60 Identities=7% Similarity=0.060 Sum_probs=45.0
Q ss_pred hcChhHHHhHHHHHHHHHHHHHHHhhcccccccchh-HHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 313 EEDPIVHRHLSSLYDTLLEQNLCRLIEPYSRVEIAH-IAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 313 ~~D~~l~~~~~~L~~~i~~~~l~~i~~pYs~I~l~~-la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
+.|.-+..+...|-++|.. -+..++++|+++|+++ +..++|++.-+...++-.+...|.+
T Consensus 17 l~d~el~~rar~LA~kIv~-pv~el~~~hTTvSVERtVlr~mGidgvda~~iVd~~~e~gLL 77 (121)
T 3kp1_E 17 LSDEELQTRFWEMAEKIVD-PLLDLGKKNTTPSIERSVLLRMGFSSLEAKAIVDKTMDRGLM 77 (121)
T ss_dssp CCHHHHHHHHHHHHHHHHH-HHHHHHHHEECHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCG
T ss_pred CCHHHHHHHHHHHHHHHHH-HHHHHHHcCCccHHHHHHHHHhCCCccchHHHHHHHHHcccc
Confidence 3566667777777777654 4678899999999986 7888999977777766666666655
No 435
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.22 E-value=62 Score=27.29 Aligned_cols=43 Identities=12% Similarity=0.206 Sum_probs=35.9
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.++-++||..+|++.+-+-+.+.+|-.+|.|. ...|.|.+.++
T Consensus 146 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 188 (202)
T 2zcw_A 146 KATHDELAAAVGSVRETVTKVIGELAREGYIR----SGYGKIQLLDL 188 (202)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----eCCCEEEEeCH
Confidence 47889999999999999999999999999885 23577777543
No 436
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=22.04 E-value=83 Score=25.21 Aligned_cols=29 Identities=7% Similarity=0.203 Sum_probs=25.6
Q ss_pred ccccccchhHHHHhCCChHHHHHHHHhhh
Q 014555 340 PYSRVEIAHIAELIELPIDHVEKKLSQMI 368 (422)
Q Consensus 340 pYs~I~l~~la~~l~l~~~evE~~l~~mI 368 (422)
.+.-.+..+||+.+|+|+.-|...+.++.
T Consensus 121 ~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 121 LIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 56788999999999999999998888765
No 437
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=21.85 E-value=64 Score=27.73 Aligned_cols=43 Identities=16% Similarity=0.161 Sum_probs=35.8
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.++-.+||..+|++.+-+-+.+.+|..+|.|.- ..|.+.+.++
T Consensus 177 ~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~~----~~~~i~i~d~ 219 (227)
T 3d0s_A 177 DLTQEEIAQLVGASRETVNKALADFAHRGWIRL----EGKSVLISDS 219 (227)
T ss_dssp CCCHHHHHHHHTSCHHHHHHHHHHHHHTTSEEE----ETTEEEESCH
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEe----cCCEEEEcCH
Confidence 578899999999999999999999999998743 4567777553
No 438
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=21.79 E-value=2.8e+02 Score=21.48 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=42.4
Q ss_pred HHHHHHHHHh----cccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHh----hCCHHHHHHHHHHHHHh
Q 014555 130 EARLAALLME----SREYTEALTLLTSLVKEVRRLDDKLLLVDIDLLESKLHFS----LRNLPKAKAALTAARTA 196 (422)
Q Consensus 130 ~~~La~~~~~----~g~~~~A~~~l~~l~~e~~~~~~~~~~~e~~l~~~~~~~~----~~n~~kak~~l~~a~~~ 196 (422)
...|+.+|.. .+|+.+|.+.++.-... . ..+.+..-..+|.. .+|+.+|...+.+|-..
T Consensus 60 ~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~----g----~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 60 CRFLGDFYENGKYVKKDLRKAAQYYSKACGL----N----DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHHHcC----C----CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 4488888988 78999999998876532 1 12223334557777 78999999999988654
No 439
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=21.72 E-value=65 Score=27.64 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=29.5
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCce
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFA 374 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~ 374 (422)
.++-.+||..+|++.+-+-+.+.+|..+|.|.
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~l~~L~~~g~I~ 194 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTALNSLIKEGYIS 194 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHHHHHHHHTTSSE
T ss_pred cCCHHHHHHHhCCcHHHHHHHHHHHHHCCcEE
Confidence 47889999999999999999999999999874
No 440
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=21.63 E-value=65 Score=27.76 Aligned_cols=44 Identities=14% Similarity=0.205 Sum_probs=36.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
-.++-++||..+|++.+-+-+.+.++-.+|.|. ...|.|.+.++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I~----~~~~~i~i~d~ 222 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRTLSTFVSERMLA----LDGKRIKIIDC 222 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHHHHHHHHTTSEE----EETTEEEESCH
T ss_pred cccCHHHHHHHhCCCHHHHHHHHHHHHHCCCEe----eCCCEEEEeCH
Confidence 467889999999999999999999999999874 23566777543
No 441
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=21.27 E-value=65 Score=27.62 Aligned_cols=42 Identities=14% Similarity=0.246 Sum_probs=34.5
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEec
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFE 388 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~ 388 (422)
.++-++||..+|++.+-+-+.+.+|-.+|.|.- ..|.|.+.+
T Consensus 187 ~lt~~~lA~~lg~sr~tvsR~l~~L~~~g~I~~----~~~~i~i~d 228 (230)
T 3iwz_A 187 RVSRQELARLVGCSREMAGRVLKKLQADGLLHA----RGKTVVLYG 228 (230)
T ss_dssp ECCHHHHHHHHTCCHHHHHHHHHHHHHTTSEEE----ETTEEEEEC
T ss_pred CCCHHHHHHHhCCcHHHHHHHHHHHHHCCCEEE----CCCEEEEee
Confidence 478899999999999999999999999998752 345566554
No 442
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=21.26 E-value=5e+02 Score=24.12 Aligned_cols=33 Identities=6% Similarity=0.098 Sum_probs=26.3
Q ss_pred cchHHHHHHHHHHhcCCHHHHHHHHHHhHHhhh
Q 014555 281 PELDAMKAVADAHSKRSLKLFETALRDFKAQLE 313 (422)
Q Consensus 281 ~~i~~~~~L~~af~~~dl~~f~~~l~~~~~~l~ 313 (422)
|.+..+.-|+.+...++...|..+.+.|++.+.
T Consensus 243 pllnF~~lLl~t~e~~~~~lF~~L~~~Y~~~L~ 275 (312)
T 2wpv_A 243 SDLNFLQLLLITCQTKDKSYFLNLKNHYLDFSQ 275 (312)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHCHHHHH
T ss_pred ccHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 456666778888999999999998888887654
No 443
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=21.25 E-value=1.6e+02 Score=21.86 Aligned_cols=35 Identities=14% Similarity=0.213 Sum_probs=23.8
Q ss_pred hhhHHHHHHHHHHhchhhcHHHHHHHHHHHhhhhh
Q 014555 205 AQQGTIDLQSGILHAEEKDYKTAYSYFFEAFEAFN 239 (422)
Q Consensus 205 ~i~a~i~~~~g~~~~~~~dy~~A~~~f~ea~~~~~ 239 (422)
...|.--...++-....|+|.+|..+|.++.+.|.
T Consensus 13 ~~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 13 STAAATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 33444444556666678999999998888876553
No 444
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=21.24 E-value=3.3e+02 Score=26.89 Aligned_cols=65 Identities=18% Similarity=0.054 Sum_probs=39.2
Q ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHh--hh--------cc-------c---hhHHHHHHHHHHHHHhhCCHHHHHHH
Q 014555 130 EARLAALLMESREYTEALTLLTSLVKEVR--RL--------DD-------K---LLLVDIDLLESKLHFSLRNLPKAKAA 189 (422)
Q Consensus 130 ~~~La~~~~~~g~~~~A~~~l~~l~~e~~--~~--------~~-------~---~~~~e~~l~~~~~~~~~~n~~kak~~ 189 (422)
-.+||..+...|+|++|.+...+.. .+. +. .+ . ...-+-...-+.+|...|.+..|-.+
T Consensus 151 ~~~LA~~L~~Lg~yq~AVea~~KA~-~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~l 229 (449)
T 1b89_A 151 FGRLASTLVHLGEYQAAVDGARKAN-STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITM 229 (449)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHT-CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHcC-CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHH
Confidence 5599999999999999988777651 110 00 00 0 00001111234577788888888777
Q ss_pred HHHHHH
Q 014555 190 LTAART 195 (422)
Q Consensus 190 l~~a~~ 195 (422)
++.+..
T Consensus 230 Le~aL~ 235 (449)
T 1b89_A 230 LEAALG 235 (449)
T ss_dssp HHHHTT
T ss_pred HHHHhC
Confidence 776643
No 445
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=21.10 E-value=54 Score=27.54 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=35.5
Q ss_pred cccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecC
Q 014555 343 RVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFED 389 (422)
Q Consensus 343 ~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~ 389 (422)
.++-++||..+|++.+-+-+.+.+|..+|.|. ...|.+.+.++
T Consensus 139 ~~t~~~lA~~lg~sr~tvsR~l~~L~~~g~I~----~~~~~i~i~d~ 181 (195)
T 3b02_A 139 TVSHEEIADATASIRESVSKVLADLRREGLIA----TAYRRVYLLDL 181 (195)
T ss_dssp ECCHHHHHHTTTSCHHHHHHHHHHHHHHTSEE----EETTEEEECCH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHHHHHCCCEE----ecCCEEEEeCH
Confidence 47788999999999999999999999999874 23566777553
No 446
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=21.01 E-value=20 Score=36.97 Aligned_cols=43 Identities=0% Similarity=0.081 Sum_probs=0.0
Q ss_pred HHHHHHhhcccccccchhHHHHhCCChHHHHHHHHhhhhcCCc
Q 014555 331 EQNLCRLIEPYSRVEIAHIAELIELPIDHVEKKLSQMILDKKF 373 (422)
Q Consensus 331 ~~~l~~i~~pYs~I~l~~la~~l~l~~~evE~~l~~mI~~g~i 373 (422)
+.-++.+++-+.+|+-+++++++|++...+...|.+|+..|.|
T Consensus 518 ~~~I~~~l~~~g~it~~di~~l~~ls~~qa~~~L~~Lv~~G~l 560 (583)
T 3lmm_A 518 TNAAMLWLSEVGDLATSDLMAMCGVSRGTAKACVDGLVDEERV 560 (583)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCcE
No 447
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=20.93 E-value=2.8e+02 Score=22.97 Aligned_cols=46 Identities=22% Similarity=0.167 Sum_probs=35.2
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhH
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI 395 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~ 395 (422)
.|.+||+.++=+++-+-+.+..= =--.|+|| +|.+++...-+....
T Consensus 48 Nf~dIa~~L~R~p~hv~ky~~~E---LGt~g~id--~~rlii~G~~~~~~i 93 (148)
T 2d74_B 48 NFKDIADALNRDPQHLLKFLLRE---IATAGTLE--GRRVVLQGRFTPYLI 93 (148)
T ss_dssp CHHHHHHHHTCCSHHHHHHHHHH---SCCCEEEE--TTEEEESSCCCHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHH---hCCceeec--CCEEEEEeeeCHHHH
Confidence 68999999999999888776652 23578999 888998877664433
No 448
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=20.93 E-value=68 Score=27.41 Aligned_cols=43 Identities=12% Similarity=0.084 Sum_probs=35.2
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecC-CCEEEEec
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQG-VGCLIIFE 388 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~-~g~v~~~~ 388 (422)
-.++-.+||+.+|++.+-+-+.+.++..+|.| ... .|.+.+.+
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~l~~l~~~g~I----~~~~~~~i~i~d 209 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVLLNDFKKMGIL----ERVNQRTLLLKD 209 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHHHHHHHHTTSE----EESSSSEEEESC
T ss_pred ccCCHHHHHHHhCCcHHHHHHHHHHHHHCCCE----EEcCCCEEEEcC
Confidence 36788999999999999999999999998876 333 46677654
No 449
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.65 E-value=3.4e+02 Score=22.64 Aligned_cols=48 Identities=13% Similarity=0.115 Sum_probs=37.3
Q ss_pred cchhHHHHhCCChHHHHHHHHhhhhcCCceeeeecCCCEEEEecCCchhhH
Q 014555 345 EIAHIAELIELPIDHVEKKLSQMILDKKFAGTLDQGVGCLIIFEDPKADAI 395 (422)
Q Consensus 345 ~l~~la~~l~l~~~evE~~l~~mI~~g~i~gkIDq~~g~v~~~~~~~~~~~ 395 (422)
.|.+||+.|+-+++.+-+++..=.. -.|.||..+|.+++...-+....
T Consensus 45 Nf~dIak~L~R~p~hv~ky~~~ELG---t~g~id~~~~rlii~G~~~~~~i 92 (157)
T 2e9h_A 45 NMVDVAKALNRPPTYPTKYFGCELG---AQTQFDVKNDRYIVNGSHEANKL 92 (157)
T ss_dssp THHHHHHHTTSCTHHHHHHHHHHHT---CCEEEETTTTEEEEEBCCCHHHH
T ss_pred cHHHHHHHHCCCHHHHHHHHHHHhC---CceeecCCCCEEEEEeeeCHHHH
Confidence 5889999999999988877765332 46899998899999877665433
No 450
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=20.16 E-value=98 Score=23.54 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=24.1
Q ss_pred ccccchhHHHHhCCChHHHHHHHHhhhh
Q 014555 342 SRVEIAHIAELIELPIDHVEKKLSQMIL 369 (422)
Q Consensus 342 s~I~l~~la~~l~l~~~evE~~l~~mI~ 369 (422)
.-.+..+||+.+|+++.-|...+.++..
T Consensus 48 ~G~s~~EIA~~L~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 48 EGFLVTEIAKKLNRSIKTISSQKKSAMM 75 (99)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 5668899999999999999999887654
Done!