BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014560
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 4 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS 63
LD+ ++ +S N I + LT L + N L +P I +LS L LDL NR+ S+P+
Sbjct: 229 LDLSNLQIFNISAN-IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPA 287
Query: 64 SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 106
+ C L FY +N ++ LP E G L L L + N L++
Sbjct: 288 ELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK 330
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%)
Query: 201 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258
L L G +L+ +P+EI + LDLS N + LP EL SC L+ N + P
Sbjct: 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLP 309
Score = 35.0 bits (79), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 35/58 (60%)
Query: 201 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258
L L + + I + I++ +T+L L+ NS+ ELP E+ + ++L+ L LS N++ P
Sbjct: 229 LDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLP 286
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 33/135 (24%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 288 DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQN 347
D+ LQI ++S NI L LYL L E P S N
Sbjct: 230 DLSNLQIFNISANIFKYD---------FLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHN 280
Query: 348 SLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPL-RSIRRTILDR 406
L S+P + L DN ++ Q L ++GNPL + + + ++
Sbjct: 281 RLTSLPAELGSCFQLKYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEK 339
Query: 407 GTKAVLKYLKDKIPE 421
++ YL+D PE
Sbjct: 340 SVTGLIFYLRDNRPE 354
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 56/203 (27%), Positives = 91/203 (44%), Gaps = 10/203 (4%)
Query: 175 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL---SRNSI 231
N + + + L + + + +K+L L+ LS++PS+ + +TKL L + N +
Sbjct: 16 NNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFH--RLTKLRLLYLNDNKL 73
Query: 232 QELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIP 290
Q LP + +L+TL ++ NK++ P + D N L+ +P F +
Sbjct: 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLT 133
Query: 291 MLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNS 348
L L L YN + SLP+ F L L+EL L QL+ P N
Sbjct: 134 KLTYLSLGYNELQSLPKG-VFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 349 LQSIPEG-FKNLTSLTELDLSDN 370
L+ +PEG F +L L L L +N
Sbjct: 193 LKRVPEGAFDSLEKLKMLQLQEN 215
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/202 (28%), Positives = 83/202 (41%), Gaps = 31/202 (15%)
Query: 208 LSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAIXXXXX 266
L+AIPS I + KLDL N + LP + L+ L L+ NK++ P I
Sbjct: 28 LTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGI----- 80
Query: 267 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQ 325
FK++ L+ L ++ N + +LP F L +L EL L R Q
Sbjct: 81 -------------------FKELKNLETLWVTDNKLQALPIGV-FDQLVNLAELRLDRNQ 120
Query: 326 LRE-APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXX 383
L+ P N LQS+P+G F LTSL EL L +N +
Sbjct: 121 LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180
Query: 384 XXXQALRLDGNPLRSIRRTILD 405
+ L+LD N L+ + D
Sbjct: 181 TELKTLKLDNNQLKRVPEGAFD 202
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 345 SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 403
+ N LQ++P G FK L +L L ++DN + A LRLD N L+S+ +
Sbjct: 69 NDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRV 128
Query: 404 LDRGTKAVLKYL 415
D TK L YL
Sbjct: 129 FDSLTK--LTYL 138
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 51/106 (48%), Gaps = 3/106 (2%)
Query: 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 61
KLD++ NKL+ L + T L L + N L +P I L L L + N++ ++
Sbjct: 41 KLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL 100
Query: 62 PSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 105
P + +LAE + N L +LP L+KL L L N+L+
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ 146
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 78/175 (44%), Gaps = 28/175 (16%)
Query: 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 257
+ L+L G L I S + E +T L L+ N +Q LP +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 258 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 316
PD + +N L+ +P F + L LDLSYN + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEG-VFDKLTQL 183
Query: 317 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 370
++L L QN L+S+P+G F LTSL + L DN
Sbjct: 184 KDLRLY-----------------------QNQLKSVPDGVFDRLTSLQYIWLHDN 215
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 64/136 (47%), Gaps = 4/136 (2%)
Query: 285 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 343
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 344 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 401
+ N LQS+P+G F LT+LTELDLS N + + + LRL N L+S+
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 402 TILDRGTKAVLKYLKD 417
+ DR T +L D
Sbjct: 199 GVFDRLTSLQYIWLHD 214
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 59
++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L+L N++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ 146
Query: 60 SIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 105
S+P + +L E + N L +LP KL++L L L+ NQLK
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Score = 37.7 bits (86), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 60/129 (46%), Gaps = 13/129 (10%)
Query: 135 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 194
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 195 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 252
++ + L ++P +++ +T+LDLS N +Q LP L+ L L +N
Sbjct: 139 NLAHNQ-------LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191
Query: 253 KIKDWPDAI 261
++K PD +
Sbjct: 192 QLKSVPDGV 200
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 59
++ L++ N+L L + T LTEL S N L +PE + L++L L L+QN++
Sbjct: 135 LTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194
Query: 60 SIPSSI 65
S+P +
Sbjct: 195 SVPDGV 200
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 59
++ L + GN+L L N + T L EL+ +N L +P+ + L+ L L L+ N++
Sbjct: 87 LTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLYLYHNQLQ 146
Query: 60 SIPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 105
S+P + +L + NN L +LP KL++L L L+ NQLK
Sbjct: 147 SLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLK 194
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 77/175 (44%), Gaps = 28/175 (16%)
Query: 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 257
+ L+L G L I S + E +T L L+ N +Q LP +L+ L+L N+++
Sbjct: 66 RYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSL 124
Query: 258 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHL 316
PD + +N L+ +P F + L LDL N + SLPE F L L
Sbjct: 125 PDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEG-VFDKLTQL 183
Query: 317 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 370
++L L + N L+S+P+G F LTSLT + L +N
Sbjct: 184 KQLSL-----------------------NDNQLKSVPDGVFDRLTSLTHIWLLNN 215
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 59/127 (46%), Gaps = 4/127 (3%)
Query: 285 GFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXX 343
K++ L L L+ N + SLP N F L +L+EL L QL+ P
Sbjct: 80 ALKELTNLTYLILTGNQLQSLP-NGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 344 X-SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRR 401
N LQS+P+G F LT+LT LDL +N + + + L L+ N L+S+
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 402 TILDRGT 408
+ DR T
Sbjct: 199 GVFDRLT 205
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 63/152 (41%), Gaps = 13/152 (8%)
Query: 135 KMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRL 194
++T L L+LTGN L+ SL NG L L EN+ D +T T L
Sbjct: 83 ELTNLTYLILTGNQLQ----SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 195 SVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPE-LSSCASLQTLILSRN 252
+ + L ++P +++ +T+LDL N +Q LP L+ L L+ N
Sbjct: 139 YLYHNQ-------LQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDN 191
Query: 253 KIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSD 284
++K PD + NNP SD
Sbjct: 192 QLKSVPDGVFDRLTSLTHIWLLNNPWDCACSD 223
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 67/163 (41%), Gaps = 5/163 (3%)
Query: 209 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 268
+A PS+ +G T +D +P + + A Q L L N+I +
Sbjct: 11 AACPSQCSCSG--TTVDCRSKRHASVPAGIPTNA--QILYLHDNQITKLEPGVFDSLINL 66
Query: 269 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE 328
+N L +P F + L +LDL N ++ + F L HL+EL++ +L E
Sbjct: 67 KELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTE 126
Query: 329 APTXXXXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDN 370
P QN L+SIP G F L+SLT L N
Sbjct: 127 LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 4 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIP 62
L + N++T L + S L EL N L +P + SL++L LDL N++ +P
Sbjct: 45 LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 63 SSI-SGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 105
S++ L E +M N L+ LP + +L+ L L L NQLK
Sbjct: 105 SAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLK 148
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
++ LD+ N+LTVL + + L EL N L +P I L+ L L L QN++ S
Sbjct: 90 LTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKS 149
Query: 61 IP 62
IP
Sbjct: 150 IP 151
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 45.8 bits (107), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 185 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 242
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 243 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 302
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDAFQDLHNLNLLSLYDNKL 140
Query: 303 SLPENPPFSSLPHLQELYL 321
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 52/115 (45%), Gaps = 1/115 (0%)
Query: 217 EAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDN 275
EA + DLS++ I L S L+ L L++N+I D
Sbjct: 273 EASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQ 332
Query: 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 330
N L + S F+++ L++LDLSYN + F LP+L+EL L QL+ P
Sbjct: 333 NFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 345 SQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 403
SQN L SI F+NL L LDLS N+I A + L LD N L+S+ I
Sbjct: 331 SQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGI 390
Query: 404 LDRGT 408
DR T
Sbjct: 391 FDRLT 395
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 3/110 (2%)
Query: 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILS 60
++L++E NKL L + + T LT+L S+N + +P+ + L++L L LH+N++ S
Sbjct: 31 TRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQS 90
Query: 61 IPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYC 108
+P+ + L E + N L ++P +L+ L + LH+N C
Sbjct: 91 LPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 56/125 (44%), Gaps = 2/125 (1%)
Query: 178 SEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPP 236
+E + L ++ T + ++ L LE L ++P +++ ++TKL LS+N IQ LP
Sbjct: 10 TEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPD 69
Query: 237 E-LSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQIL 295
L L L NK++ P+ + D N L+ VP F + LQ +
Sbjct: 70 GVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKI 129
Query: 296 DLSYN 300
L N
Sbjct: 130 WLHTN 134
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 5/133 (3%)
Query: 192 TRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILS 250
+R S + E+ L+++P+ I T+L+L N +Q LP L L LS
Sbjct: 3 SRCSCSGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLS 60
Query: 251 RNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPP 309
+N+I+ PD + N L+ +P+ F + L+ L L N + S+P+
Sbjct: 61 QNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDG-I 119
Query: 310 FSSLPHLQELYLR 322
F L LQ+++L
Sbjct: 120 FDRLTSLQKIWLH 132
Score = 38.1 bits (87), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 345 SQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTI 403
SQN +QS+P+G F LT LT L L +N + + + L LD N L+S+ I
Sbjct: 60 SQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119
Query: 404 LDRGT 408
DR T
Sbjct: 120 FDRLT 124
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
Query: 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILS 60
+ LD+E N L L N + T LT+L N L +P + L+ L L+L N++ S
Sbjct: 31 TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90
Query: 61 IPSSI-SGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLK 105
+P+ + L E + N L +LP KL++L L L+ NQLK
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 295 LDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXX-SQNSLQSI 352
LDL N + SLP N F L L +LYL +L+ P S N LQS+
Sbjct: 33 LDLETNSLKSLP-NGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL 91
Query: 353 PEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILDRGTKAV 411
P G F LT L EL L+ N + + + LRL N L+S+ + DR T
Sbjct: 92 PNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQ 151
Query: 412 LKYLKD 417
+L D
Sbjct: 152 YIWLHD 157
Score = 35.0 bits (79), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 47/103 (45%), Gaps = 2/103 (1%)
Query: 200 ELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDW 257
+L L G L ++P+ ++ + +T L+LS N +Q LP L+ L L+ N+++
Sbjct: 56 QLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSL 115
Query: 258 PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
PD + N L+ VP F + LQ + L N
Sbjct: 116 PDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRIL 59
++ L++ N+L L N + T L EL + N L +P+ + L++L L L+QN++
Sbjct: 78 LTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLK 137
Query: 60 SIPSSI 65
S+P +
Sbjct: 138 SVPDGV 143
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 62/139 (44%), Gaps = 2/139 (1%)
Query: 185 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPE-LSSCA 242
+ L + T L T E+ LE + IP + ++ ++DLS N I EL P+
Sbjct: 21 KGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR 80
Query: 243 SLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIA 302
SL +L+L NKI + P ++ + N + + D F+D+ L +L L N
Sbjct: 81 SLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKL 140
Query: 303 SLPENPPFSSLPHLQELYL 321
FS L +Q ++L
Sbjct: 141 QTIAKGTFSPLRAIQTMHL 159
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 44.7 bits (104), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/185 (27%), Positives = 71/185 (38%), Gaps = 28/185 (15%)
Query: 224 LDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 282
L LSRN I+ + + A+L TL L N++ P+ NNP+ +P
Sbjct: 93 LQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIP 152
Query: 283 SDGFKDIPMLQILDLS--YNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 340
S F IP L+ LDL ++ + E F L +L+ L L LRE P
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLREIPN--------- 202
Query: 341 XXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIR 400
L L ELDLS N++SA Q L + + ++ I
Sbjct: 203 ---------------LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247
Query: 401 RTILD 405
R D
Sbjct: 248 RNAFD 252
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/275 (22%), Positives = 101/275 (36%), Gaps = 33/275 (12%)
Query: 175 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE 233
N+ S+ T+ L + + ++ L+L N+ I ++ + + L L RNSI++
Sbjct: 54 NQFSKVVCTRRGLSEVPQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQ 113
Query: 234 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 292
+ + ASL TL L N + P NNP+ +PS F +P L
Sbjct: 114 IEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173
Query: 293 QILDLS----------------YNI-------ASLPENPPFSSLPHLQELYLRRMQLREA 329
LDL +N+ ++ + P + L L+EL + E
Sbjct: 174 MRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHFPEI 233
Query: 330 PTXXXXXXXXXXXXXSQNSLQSIPE--GFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQ 387
NS S+ E F L SL EL+L+ NN+S+
Sbjct: 234 RPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLV 293
Query: 388 ALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 422
L L NP D + +L++ IP N
Sbjct: 294 ELHLHHNPWNC------DCDILWLAWWLREYIPTN 322
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 70/173 (40%), Gaps = 30/173 (17%)
Query: 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 264
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 323
NP++ + F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---- 129
Query: 324 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 -------------------NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 68/141 (48%), Gaps = 16/141 (11%)
Query: 137 TTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITM-----A 191
T+L+ L L+ N + T+ S+ + L + S L + + + +LI +
Sbjct: 373 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432
Query: 192 TRLS---VTSKELSLEGMNLSA-------IPSEIWEAGEITKLDLSRNSIQELPP-ELSS 240
TR++ + + SLE + ++ +P E +T LDLS+ +++L P +S
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492
Query: 241 CASLQTLILSRNKIKDWPDAI 261
+SLQ L ++ N++K PD I
Sbjct: 493 LSSLQVLNMASNQLKSVPDGI 513
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 50/130 (38%), Gaps = 4/130 (3%)
Query: 283 SDGFKDIPMLQILDLSY-NIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXX-XXXXX 340
S F + L+ LD + N+ + E F SL +L L + R A
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 341 XXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRS 398
+ NS Q +P+ F L +LT LDLS + Q L + N L+S
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508
Query: 399 IRRTILDRGT 408
+ I DR T
Sbjct: 509 VPDGIFDRLT 518
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 72/175 (41%), Gaps = 30/175 (17%)
Query: 204 EGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIX 262
E +N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 16 EELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 73
Query: 263 XXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYL 321
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 74 QSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV 132
Query: 322 RRMQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 -----------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.5 bits (62), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 58
+ KL L L N I L EL + NL+ +PE +L+ L LDL N+I
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 59 LSI 61
SI
Sbjct: 163 QSI 165
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 224 LDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 282
LDLS N ++ L S LQ L LSR +I+ D NP++ +
Sbjct: 33 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 283 SDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXX 341
F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---------------------- 129
Query: 342 XXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 130 -NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 42.4 bits (98), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 264
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 323
NP++ + F + LQ ++ L N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 324 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 58
+ KL L L N I L EL + NL+ +PE +L+ L LDL N+I
Sbjct: 104 LQKLVALETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 59 LSI 61
SI
Sbjct: 164 QSI 166
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 209 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 267
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 94 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 136
Query: 268 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 326
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 137 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 184
Query: 327 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 385
QN + + P F++L L L L NN+SA
Sbjct: 185 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 225
Query: 386 XQALRLDGNP 395
Q LRL+ NP
Sbjct: 226 LQYLRLNDNP 235
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 59
+ L ++ L L L L L N L +P+ T L L L LH NRI
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 165
Query: 60 SIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA 111
S+P + G SL + N ++ + P L +L TL L +N L EA
Sbjct: 166 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 219
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 242 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 301
A+ Q + L N+I P A +N L ++ + F + +L+ LDLS N
Sbjct: 31 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 90
Query: 302 ASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 360
+P F L L L+L R L+E P F+ L
Sbjct: 91 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLA 128
Query: 361 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
+L L L DN + A L L GN + S+
Sbjct: 129 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 167
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 65/155 (41%), Gaps = 28/155 (18%)
Query: 224 LDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVP 282
LDLS N ++ L S LQ L LSR +I+ D NP++ +
Sbjct: 57 LDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 116
Query: 283 SDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXX 341
F + LQ ++ + N+ASL EN P L L+EL
Sbjct: 117 LGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKEL---------------------- 153
Query: 342 XXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 154 -NVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 70/190 (36%), Gaps = 51/190 (26%)
Query: 209 SAIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKDWPDAIXXXXXX 267
S P+ G + L L R +QEL P L A+LQ L L
Sbjct: 95 SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQ----------------- 137
Query: 268 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQL 326
+N L+ +P D F+D+ L L L N I+S+PE F L L L L
Sbjct: 138 -------DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA-FRGLHSLDRLLLH---- 185
Query: 327 REAPTXXXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXX 385
QN + + P F++L L L L NN+SA
Sbjct: 186 -------------------QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226
Query: 386 XQALRLDGNP 395
Q LRL+ NP
Sbjct: 227 LQYLRLNDNP 236
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 47/114 (41%), Gaps = 3/114 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 59
+ L ++ L L L L L N L +P+ T L L L LH NRI
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRIS 166
Query: 60 SIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA 111
S+P + G SL + N ++ + P L +L TL L +N L EA
Sbjct: 167 SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA 220
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 57/159 (35%), Gaps = 23/159 (14%)
Query: 242 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 301
A+ Q + L N+I P A +N L ++ + F + +L+ LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 302 ASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 360
+P F L L L+L R L+E P F+ L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELG----------------------PGLFRGLA 129
Query: 361 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
+L L L DN + A L L GN + S+
Sbjct: 130 ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 264
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 18 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 75
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 323
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 132
Query: 324 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 133 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 164
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 58
+ KL L L N I L EL + NL+ +PE +L+ L LDL N+I
Sbjct: 103 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 162
Query: 59 LSI 61
SI
Sbjct: 163 QSI 165
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 264
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 17 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 74
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 323
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 131
Query: 324 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 132 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 163
Score = 28.5 bits (62), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 58
+ KL L L N I L EL + NL+ +PE +L+ L LDL N+I
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 59 LSI 61
SI
Sbjct: 162 QSI 164
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 71/173 (41%), Gaps = 30/173 (17%)
Query: 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAIXXX 264
+N IP + LDLS N ++ L S LQ L LSR +I+ D
Sbjct: 19 LNFYKIPDNL--PFSTKNLDLSWNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQS 76
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQELYLRR 323
NP++ + F + LQ ++ + N+ASL EN P L L+EL +
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASL-ENFPIGHLKTLKELNV-- 133
Query: 324 MQLREAPTXXXXXXXXXXXXXSQNSLQS--IPEGFKNLTSLTELDLSDNNISA 374
+ N +QS +PE F NLT+L LDLS N I +
Sbjct: 134 ---------------------AHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 165
Score = 28.5 bits (62), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG--MPETIGSLSRLIRLDLHQNRI 58
+ KL L L N I L EL + NL+ +PE +L+ L LDL N+I
Sbjct: 104 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 163
Query: 59 LSI 61
SI
Sbjct: 164 QSI 166
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Query: 200 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWP 258
EL L+G + +P E+ +T +DLS N I L + S+ L TLILS N+++ P
Sbjct: 35 ELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 259 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
N + VP F D+ L L + N
Sbjct: 95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL 59
++ +D+ N+++ LSN ++ T L LI S N L + P T L L L LH N I
Sbjct: 56 LTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Query: 60 SIP-SSISGCCSLAEFYMGNNAL 81
+P + + +L+ +G N L
Sbjct: 116 VVPEGAFNDLSALSHLAIGANPL 138
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 54/135 (40%), Gaps = 7/135 (5%)
Query: 239 SSCASLQTLILSRNK-IKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDL 297
+ C L T++ NK +K P I D N VP + + L ++DL
Sbjct: 6 TECTCLDTVVRCSNKGLKVLPKGIPRDVTELYL---DGNQFTLVPKE-LSNYKHLTLIDL 61
Query: 298 SYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXXSQNSLQSIPEG- 355
S N S N FS++ L L L +LR P N + +PEG
Sbjct: 62 SNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGA 121
Query: 356 FKNLTSLTELDLSDN 370
F +L++L+ L + N
Sbjct: 122 FNDLSALSHLAIGAN 136
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Query: 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLR 279
++T+L L N +P ELS+ L + LS N+I + N LR
Sbjct: 32 DVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLR 91
Query: 280 QVPSDGFKDIPMLQILDLSYN-IASLPENP--PFSSLPHL 316
+P F + L++L L N I+ +PE S+L HL
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 53/114 (46%), Gaps = 11/114 (9%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLI-----RLDLHQ 55
+ LDV N L + + +W E I NL + M GS+ R + LDLH
Sbjct: 405 LETLDVSLNSLNSHAYDRTCAWA---ESILVLNLSSNM--LTGSVFRCLPPKVKVLDLHN 459
Query: 56 NRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYC 108
NRI+SIP ++ +L E + +N L ++P +L+ L + LH N C
Sbjct: 460 NRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC 513
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNP 277
++ LDL N I +P +++ +LQ L ++ N++K PD + +NP
Sbjct: 451 KVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNP 508
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 90/244 (36%), Gaps = 53/244 (21%)
Query: 181 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSE----------IW---------EAGEI 221
S ++ L + T + +S+ + L G +S +P+ +W +A
Sbjct: 16 SCPQQGLQAVPTGIPASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAF 75
Query: 222 T------KLDLSRNSIQEL--PPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXX 273
T +LDLS N+ + P L TL L R +++ +
Sbjct: 76 TGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYL 135
Query: 274 DNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYLRRMQLREAPTX 332
+N L+ +P + F+D+ L L L N I S+PE+ F L L L L
Sbjct: 136 QDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHA-FRGLHSLDRLLLH---------- 184
Query: 333 XXXXXXXXXXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRL 391
QN + + P F++L L L L NN+S Q LRL
Sbjct: 185 -------------QNHVARVHPHAFRDLGRLMTLYLFANNLSMLPAEVLVPLRSLQYLRL 231
Query: 392 DGNP 395
+ NP
Sbjct: 232 NDNP 235
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 58/159 (36%), Gaps = 23/159 (14%)
Query: 242 ASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNI 301
AS Q + L N+I P A +N L + + F + +L+ LDLS N
Sbjct: 31 ASSQRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNA 90
Query: 302 ASLPENPP-FSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLT 360
+P F L HL L+L R L+E P F+ L
Sbjct: 91 QLRVVDPTTFRGLGHLHTLHLDRCGLQELG----------------------PGLFRGLA 128
Query: 361 SLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
+L L L DNN+ A L L GN + S+
Sbjct: 129 ALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSV 167
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 3/107 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRIL 59
+ L ++ L L L L L N L +P+ T L L L LH NRI
Sbjct: 106 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIP 165
Query: 60 SIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQL 104
S+P + G SL + N ++ + P L +L TL L +N L
Sbjct: 166 SVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNL 212
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 35/276 (12%)
Query: 175 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 233
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 234 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 292
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 293 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 327
+ LDL + + +L + P ++L L+EL L R+ L
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 328 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 386
P + +I F +L SL EL+LS NN+ +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 387 QALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 422
+ + L+ NP + + +LK+ +P N
Sbjct: 253 ERVHLNHNPWHC------NCDVLWLSWWLKETVPSN 282
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 236 PELSSCASLQT-LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQI 294
P SC++ + +I +R ++ + P +I N ++ + +D FK + L+I
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEI 63
Query: 295 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNS-LQSIP 353
L LS N+ E F+ LP L L L +L PT +N+ ++SIP
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 354 E-GFKNLTSLTELDLSD 369
F + SL LDL +
Sbjct: 124 SYAFNRVPSLRRLDLGE 140
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 61
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 62 PSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 105
P + L + Y+G N L +LP+ +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.0 bits (71), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 347 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 405
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 406 RGTK 409
R TK
Sbjct: 129 RLTK 132
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 61
KLD++ L LS+ T LT L N L + + L+ L L L N++ S+
Sbjct: 39 KLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASL 98
Query: 62 PSSI-SGCCSLAEFYMGNNALSALPAE-LGKLSKLGTLDLHSNQLK 105
P + L + Y+G N L +LP+ +L+KL L L++NQL+
Sbjct: 99 PLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQ 144
Score = 32.0 bits (71), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 347 NSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTILD 405
N LQ++ G F +LT L L L++N +++ L L GN L+S+ + D
Sbjct: 69 NQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD 128
Query: 406 RGTK 409
R TK
Sbjct: 129 RLTK 132
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 69/315 (21%), Positives = 124/315 (39%), Gaps = 64/315 (20%)
Query: 75 YMGNNALSALPAE--LGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXXPPE 132
Y+G N L P E L K KLG L+ NQL+ P
Sbjct: 311 YIGYNNLKTFPVETSLQKXKKLGXLECLYNQLE----------------------GKLPA 348
Query: 133 IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPAL--LKYLRSRL---PENEDSEASTTKEDL 187
G L L L N + + ++ G T + L + ++L P D+++
Sbjct: 349 FGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKS------- 400
Query: 188 ITMATRLSVTSKEL-SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS-LQ 245
+++ + + + E+ S++G N + ++ ++ ++LS N I + P EL S S L
Sbjct: 401 VSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 246 TLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASL 304
++ L N + + P N L+ ++ FK+ +L +DL +N + L
Sbjct: 461 SINLXGNXLTEIP----------------KNSLKD-ENENFKNTYLLTSIDLRFNKLTKL 503
Query: 305 PENPPFSSLPHLQELYLRRMQLREAPTX-------XXXXXXXXXXXXSQNSLQSIPEGFK 357
++ ++LP+L + L + PT +L+ PEG
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 358 NLTSLTELDLSDNNI 372
SLT+L + N+I
Sbjct: 564 LCPSLTQLQIGSNDI 578
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 38.5 bits (88), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/276 (21%), Positives = 108/276 (39%), Gaps = 35/276 (12%)
Query: 175 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQE 233
N+ S T+ +L + + V ++ L+L+ ++ I ++ ++ + L LS+N +++
Sbjct: 14 NQASRVICTRRELAEVPASIPVNTRYLNLQENSIQVIRTDTFKHLRHLEILQLSKNLVRK 73
Query: 234 LP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPML 292
+ + SL TL L N++ P NNP+ +PS F +P L
Sbjct: 74 IEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 133
Query: 293 QILDL-----------------------SYNIASLPENPPFSSLPHLQELYL--RRMQLR 327
+ LDL + + +L + P ++L L+EL L R+ L
Sbjct: 134 RRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPNLTALVRLEELELSGNRLDLI 193
Query: 328 EAPTXXXXXXXXXXXXXSQNSLQSIPE-GFKNLTSLTELDLSDNNISAXXXXXXXXXXXX 386
P + +I F +L SL EL+LS NN+ +
Sbjct: 194 R-PGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRL 252
Query: 387 QALRLDGNPLRSIRRTILDRGTKAVLKYLKDKIPEN 422
+ + L+ NP + + +LK+ +P N
Sbjct: 253 ERVHLNHNPWHC------NCDVLWLSWWLKETVPSN 282
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 236 PELSSCASLQT-LILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQI 294
P SC++ + +I +R ++ + P +I N ++ + +D FK + L+I
Sbjct: 7 PAACSCSNQASRVICTRRELAEVPASIPVNTRYLNL---QENSIQVIRTDTFKHLRHLEI 63
Query: 295 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNS-LQSIP 353
L LS N+ E F+ LP L L L +L PT +N+ ++SIP
Sbjct: 64 LQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIP 123
Query: 354 E-GFKNLTSLTELDLSD 369
F + SL LDL +
Sbjct: 124 SYAFNRVPSLRRLDLGE 140
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 201 LSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWP 258
L+L + + I + + A I KL + N+I+ LPP + L T L+L RN + P
Sbjct: 80 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 139
Query: 259 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
I NN L ++ D F+ LQ L LS N
Sbjct: 140 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 181
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 8/130 (6%)
Query: 275 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 331
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 60 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 116
Query: 332 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 389
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 117 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 176
Query: 390 RLDGNPLRSI 399
+L N L +
Sbjct: 177 QLSSNRLTHV 186
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 201 LSLEGMNLSAIPSEIWE-AGEITKLDLSRNSIQELPPELSSCASLQT-LILSRNKIKDWP 258
L+L + + I + + A I KL + N+I+ LPP + L T L+L RN + P
Sbjct: 74 LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133
Query: 259 DAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
I NN L ++ D F+ LQ L LS N
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN 175
Score = 33.1 bits (74), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 62/145 (42%), Gaps = 8/145 (5%)
Query: 275 NNPLRQVPS---DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 331
N+ +R++P+ D F+ + +L + DL I + + F+ +Q+LY+ +R P
Sbjct: 54 NSTMRKLPAALLDSFRQVELLNLNDLQ--IEEI-DTYAFAYAHTIQKLYMGFNAIRYLPP 110
Query: 332 XXXXXX-XXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQAL 389
+N L S+P G F N LT L +S+NN+ Q L
Sbjct: 111 HVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNL 170
Query: 390 RLDGNPLRSIRRTILDRGTKAVLKY 414
+L N L + +++ A + Y
Sbjct: 171 QLSSNRLTHVDLSLIPSLFHANVSY 195
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 68/250 (27%), Positives = 104/250 (41%), Gaps = 52/250 (20%)
Query: 14 LSNNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLDLHQNRILSIPSSISGCC 69
LS+N I+ + L+ L + + L G T + +L+ L RLD+ N++ I S ++
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLT 194
Query: 70 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXX 129
+L NN +S + LG L+ L L L+ NQLK+ A
Sbjct: 195 NLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTLAS----------------- 236
Query: 130 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 189
+T L L L N + L P L K +L N+ S S
Sbjct: 237 ------LTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNIS-------P 277
Query: 190 MATRLSVTSKELS---LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 246
+A ++T+ EL+ LE + S I +T L L N+I ++ P +SS LQ
Sbjct: 278 LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 330
Query: 247 LILSRNKIKD 256
L S NK+ D
Sbjct: 331 LFFSNNKVSD 340
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 84/200 (42%), Gaps = 33/200 (16%)
Query: 199 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCA----SLQTLILSRNK 253
K +++E + +P + + LDLS N + E + S+C SLQTL+LS+N
Sbjct: 313 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 372
Query: 254 IKDWPDA--IXXXXXXXXXXXXDNNPLRQVP---------------SDGFKDIPM----- 291
++ I N +P S G + +
Sbjct: 373 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 432
Query: 292 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQS 351
L++LD+S N +L F LP LQELY+ R +L+ P S+N L+S
Sbjct: 433 LEVLDVSNN--NLDSFSLF--LPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKS 487
Query: 352 IPEG-FKNLTSLTELDLSDN 370
+P+G F LTSL ++ L N
Sbjct: 488 VPDGIFDRLTSLQKIWLHTN 507
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 354 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 404
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 68 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 118
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/116 (31%), Positives = 55/116 (47%), Gaps = 6/116 (5%)
Query: 207 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAIXXX 264
+ ++IPS + A + LDLS N I + +L +CA+LQ LIL ++I DA
Sbjct: 16 SFTSIPSGLTAA--MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 73
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 319
DN+ L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 74 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 128
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 89/218 (40%), Gaps = 48/218 (22%)
Query: 42 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 101
+ +L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 226
Query: 102 NQLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 161
NQLK+ A +T L L L N + L P
Sbjct: 227 NQLKDIGTLAS-----------------------LTNLTDLDLANNQISNL------APL 257
Query: 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEA 218
L K +L N+ S S +A ++T+ EL+ LE + S I
Sbjct: 258 SGLTKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNL 304
Query: 219 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256
+T L L N+I ++ P +SS LQ L S NK+ D
Sbjct: 305 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFSNNKVSD 341
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 36.6 bits (83), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 104/250 (41%), Gaps = 52/250 (20%)
Query: 14 LSNNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLDLHQNRILSIPSSISGCC 69
LS+N I+ + L+ L + + L G T + +L+ L RLD+ N++ I S ++
Sbjct: 140 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLT 198
Query: 70 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXX 129
+L NN +S + LG L+ L L L+ NQLK+ A
Sbjct: 199 NLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTLAS----------------- 240
Query: 130 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 189
+T L L L N + L P L K +L N+ S S
Sbjct: 241 ------LTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNIS-------P 281
Query: 190 MATRLSVTSKELS---LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 246
+A ++T+ EL+ LE + S I +T L L N+I ++ P +SS LQ
Sbjct: 282 LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 334
Query: 247 LILSRNKIKD 256
L + NK+ D
Sbjct: 335 LFFANNKVSD 344
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 83/200 (41%), Gaps = 33/200 (16%)
Query: 199 KELSLEGMNLSAIPSEIWEA-GEITKLDLSRNSIQELPPELSSCA----SLQTLILSRNK 253
K +++E + +P + + LDLS N + E + S+C SLQTL+LS+N
Sbjct: 339 KRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNH 398
Query: 254 IKDWPDA--IXXXXXXXXXXXXDNNPLRQVP---------------SDGFKDIPM----- 291
++ I N +P S G + +
Sbjct: 399 LRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT 458
Query: 292 LQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQS 351
L++LD+S N +L F LP LQELY+ R +L+ P S N L+S
Sbjct: 459 LEVLDVSNN--NLDSFSLF--LPRLQELYISRNKLKTLPDASLFPVLLVMKIAS-NQLKS 513
Query: 352 IPEG-FKNLTSLTELDLSDN 370
+P+G F LTSL ++ L N
Sbjct: 514 VPDGIFDRLTSLQKIWLHTN 533
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 354 EGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 404
+ F +L SL LDLSDN++S+ + L L GNP +++ T L
Sbjct: 94 DAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSL 144
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 54/116 (46%), Gaps = 6/116 (5%)
Query: 207 NLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWP-DAIXXX 264
+ ++IPS + + LDLS N I + +L +CA+LQ LIL ++I DA
Sbjct: 42 SFTSIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSL 99
Query: 265 XXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQEL 319
DN+ L + S F + L+ L+L N +L F +L +LQ L
Sbjct: 100 GSLEHLDLSDNH-LSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTL 154
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 36.2 bits (82), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 52/106 (49%), Gaps = 7/106 (6%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTM-LTELIASKNLLNGMPETIGSL--SRLIRLDLHQNR 57
+ +LD+ N ++ SWT L L S N+L +TI R+ LDLH N+
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILT---DTIFRCLPPRIKVLDLHSNK 432
Query: 58 ILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSN 102
I SIP + +L E + +N L ++P +L+ L + LH+N
Sbjct: 433 IKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTN 478
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 221 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAI 261
I LDL N I+ +P ++ +LQ L ++ N++K PD I
Sbjct: 423 IKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGI 463
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 35.8 bits (81), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +NQL E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 35.8 bits (81), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +NQL E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 35.8 bits (81), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +NQL E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 52/250 (20%)
Query: 14 LSNNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLDLHQNRILSIPSSISGCC 69
LS+N I+ + L+ L + + L G T + +L+ L RLD+ N++ I S ++
Sbjct: 141 LSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLT 199
Query: 70 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXX 129
+L NN +S + LG L+ L L L+ NQLK+ A
Sbjct: 200 NLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTLAS----------------- 241
Query: 130 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 189
+T L L L N + L P L K +L N+ S S
Sbjct: 242 ------LTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNIS-------P 282
Query: 190 MATRLSVTSKELS---LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 246
+A ++T+ EL+ LE + S I +T L L N+I ++ P +SS LQ
Sbjct: 283 LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 335
Query: 247 LILSRNKIKD 256
L NK+ D
Sbjct: 336 LFFYNNKVSD 345
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 35/108 (32%), Positives = 54/108 (50%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +NQL E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 35.4 bits (80), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 40 ETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 98
E + S+L RL L N+I I + S+S +L E ++ NN LS +PA L L L +
Sbjct: 211 EDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVY 270
Query: 99 LHSNQLKEYCV 109
LH+N + + V
Sbjct: 271 LHTNNITKVGV 281
Score = 31.6 bits (70), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 46/124 (37%), Gaps = 25/124 (20%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXX 334
NN + ++ D FK + L L L N S FS L LQ+LY+ + L E P
Sbjct: 63 NNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPP--- 119
Query: 335 XXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGN 394
++P +SL EL + DN I + + GN
Sbjct: 120 ----------------NLP------SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGN 157
Query: 395 PLRS 398
PL +
Sbjct: 158 PLEN 161
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPL 278
++ KL +S+N + E+PP L S SL L + N+I+ P + NPL
Sbjct: 103 KLQKLYISKNHLVEIPPNLPS--SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPL 159
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 67/250 (26%), Positives = 103/250 (41%), Gaps = 52/250 (20%)
Query: 14 LSNNLIASWTMLTELIASKNLLNGMPET----IGSLSRLIRLDLHQNRILSIPSSISGCC 69
LS+N I+ + L+ L + + L G T + +L+ L RLD+ N++ I S ++
Sbjct: 136 LSSNTISDISALSGLTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI-SVLAKLT 194
Query: 70 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXX 129
+L NN +S + LG L+ L L L+ NQLK+ A
Sbjct: 195 NLESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDIGTLAS----------------- 236
Query: 130 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLIT 189
+T L L L N + L P L K +L N+ S S
Sbjct: 237 ------LTNLTDLDLANNQISNL------APLSGLTKLTELKLGANQISNIS-------P 277
Query: 190 MATRLSVTSKELS---LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQT 246
+A ++T+ EL+ LE + S I +T L L N+I ++ P +SS LQ
Sbjct: 278 LAGLTALTNLELNENQLEDI------SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQR 330
Query: 247 LILSRNKIKD 256
L NK+ D
Sbjct: 331 LFFYNNKVSD 340
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 35.0 bits (79), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 48/115 (41%), Gaps = 27/115 (23%)
Query: 208 LSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXX 266
L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 43 LNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------- 89
Query: 267 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 321
+ D F + L+ LDLSYN S + F L L L L
Sbjct: 90 -------------TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNL 131
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP 62
LD+ N++T +SN+ + L L+ + N +N + E + SL L LDL N + ++
Sbjct: 57 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 116
Query: 63 SS 64
SS
Sbjct: 117 SS 118
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 42 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 101
+ +L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 226
Query: 102 NQLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 161
NQLK+ A +T L L L N + L P
Sbjct: 227 NQLKDIGTLAS-----------------------LTNLTDLDLANNQISNL------APL 257
Query: 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEA 218
L K +L N+ S S +A ++T+ EL+ LE + S I
Sbjct: 258 SGLTKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNL 304
Query: 219 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256
+T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 305 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 88/218 (40%), Gaps = 48/218 (22%)
Query: 42 IGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 101
+ +L+ L RLD+ N++ I S ++ +L NN +S + LG L+ L L L+
Sbjct: 169 LANLTTLERLDISSNKVSDI-SVLAKLTNLESLIATNNQISDI-TPLGILTNLDELSLNG 226
Query: 102 NQLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 161
NQLK+ A +T L L L N + L P
Sbjct: 227 NQLKDIGTLAS-----------------------LTNLTDLDLANNQISNL------APL 257
Query: 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS---LEGMNLSAIPSEIWEA 218
L K +L N+ S S +A ++T+ EL+ LE + S I
Sbjct: 258 SGLTKLTELKLGANQISNIS-------PLAGLTALTNLELNENQLEDI------SPISNL 304
Query: 219 GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256
+T L L N+I ++ P +SS LQ L NK+ D
Sbjct: 305 KNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNKVSD 341
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 34.7 bits (78), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 27/97 (27%)
Query: 208 LSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXX 266
L++IPS + EA + LDLS N I + +L C +LQ L+L+ N I
Sbjct: 17 LNSIPSGLTEA--VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGIN----------- 63
Query: 267 XXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 303
+ D F + L+ LDLSYN S
Sbjct: 64 -------------TIEEDSFSSLGSLEHLDLSYNYLS 87
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 4 LDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP 62
LD+ N++T +SN+ + L L+ + N +N + E + SL L LDL N + ++
Sbjct: 31 LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS 90
Query: 63 SS 64
SS
Sbjct: 91 SS 92
Score = 28.1 bits (61), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 40/103 (38%), Gaps = 27/103 (26%)
Query: 25 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC--------------- 69
LT + SKN + MPET ++ L+L RI S++GC
Sbjct: 389 LTNIDISKNSFHSMPETCQWPEKMKYLNLSSTRI----HSVTGCIPKTLEILDVSNNNLN 444
Query: 70 -------SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLK 105
L E Y+ N L LP + L L L + NQLK
Sbjct: 445 LFSLNLPQLKELYISRNKLMTLP-DASLLPMLLVLKISRNQLK 486
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 286 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXX 344
F + + LD+SYN+ S S+P+L L L + + P
Sbjct: 625 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 684
Query: 345 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 374
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 685 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 715
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 59
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N++
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 60 S-IPSSISGCCSLAEFYMGNNALSALPAELGKL 91
IP ++S L E + NN LS E+G+
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 723
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 25 LTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALS 82
L LI N L G +P + + + L + L NR+ IP I +LA + NN+ S
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 524
Query: 83 A-LPAELGKLSKLGTLDLHSN 102
+PAELG L LDL++N
Sbjct: 525 GNIPAELGDCRSLIWLDLNTN 545
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 23/75 (30%)
Query: 31 SKNLLNG-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 89
S N+L+G +P+ IGS+ L L+L N ISG ++P E+G
Sbjct: 637 SYNMLSGYIPKEIGSMPYLFILNLGHN-------DISG---------------SIPDEVG 674
Query: 90 KLSKLGTLDLHSNQL 104
L L LDL SN+L
Sbjct: 675 DLRGLNILDLSSNKL 689
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK-DW 257
K L++ G +S ++ + LD+S N+ P L C++LQ L +S NK+ D+
Sbjct: 178 KHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 236
Query: 258 PDAI 261
AI
Sbjct: 237 SRAI 240
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 286 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXX 344
F + + LD+SYN+ S S+P+L L L + + P
Sbjct: 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDL 687
Query: 345 SQNSLQS-IPEGFKNLTSLTELDLSDNNISA 374
S N L IP+ LT LTE+DLS+NN+S
Sbjct: 688 SSNKLDGRIPQAMSALTMLTEIDLSNNNLSG 718
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 44/93 (47%), Gaps = 2/93 (2%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRIL 59
M LD+ N L+ I S L L N ++G +P+ +G L L LDL N++
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 60 S-IPSSISGCCSLAEFYMGNNALSALPAELGKL 91
IP ++S L E + NN LS E+G+
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQF 726
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 25 LTELIASKNLLNG-MPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGNNALS 82
L LI N L G +P + + + L + L NR+ IP I +LA + NN+ S
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFS 527
Query: 83 A-LPAELGKLSKLGTLDLHSN 102
+PAELG L LDL++N
Sbjct: 528 GNIPAELGDCRSLIWLDLNTN 548
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 36/75 (48%), Gaps = 23/75 (30%)
Query: 31 SKNLLNG-MPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELG 89
S N+L+G +P+ IGS+ L L+L N ISG ++P E+G
Sbjct: 640 SYNMLSGYIPKEIGSMPYLFILNLGHN-------DISG---------------SIPDEVG 677
Query: 90 KLSKLGTLDLHSNQL 104
L L LDL SN+L
Sbjct: 678 DLRGLNILDLSSNKL 692
Score = 28.5 bits (62), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 33/64 (51%), Gaps = 2/64 (3%)
Query: 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK-DW 257
K L++ G +S ++ + LD+S N+ P L C++LQ L +S NK+ D+
Sbjct: 181 KHLAISGNKISG-DVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239
Query: 258 PDAI 261
AI
Sbjct: 240 SRAI 243
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Query: 293 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTXXXXXXXXXXXXXSQNSLQS 351
++LDL N F+S PHL+EL L + P N L+
Sbjct: 35 RLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL 94
Query: 352 IPEG-FKNLTSLTELDLSDNNI 372
IP G F L++LT+LD+S+N I
Sbjct: 95 IPLGVFTGLSNLTKLDISENKI 116
Score = 32.0 bits (71), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 88/380 (23%), Positives = 138/380 (36%), Gaps = 74/380 (19%)
Query: 28 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-P 85
++ + +PE I + +RL LDL +NRI ++ + L E + N +SA+ P
Sbjct: 16 VLCHRKRFVAVPEGIPTETRL--LDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP 73
Query: 86 AELGKLSKLGTLDLHSNQLKEYCVEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLT 145
L L TL L SN+LK P +G T L L
Sbjct: 74 GAFNNLFNLRTLGLRSNRLK----------------------LIP--LGVFTGLSNLT-- 107
Query: 146 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSV---TSKELS 202
+ + LL Y+ L + E DL+ ++ R + ++L+
Sbjct: 108 -------KLDISENKIVILLDYMFQDLYNLKSLEVG--DNDLVYISHRAFSGLNSLEQLT 158
Query: 203 LEGMNLSAIPSEIWEAGE---ITKL-DLSRNSIQELPPELSSCASLQTLILSRNKIKDW- 257
LE NL++IP+E + +L L+ N+I++ L+ L +S D
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY--SFKRLYRLKVLEISHWPYLDTM 216
Query: 258 -PDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHL 316
P+ + N L VP + + L+ L+LSYN S E L L
Sbjct: 217 TPNCLYGLNLTSLSITHCN--LTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRL 274
Query: 317 QELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISAXX 376
QE+ L QL P F+ L L L++S N ++
Sbjct: 275 QEIQLVGGQLAVVE----------------------PYAFRGLNYLRVLNVSGNQLTTLE 312
Query: 377 XXXXXXXXXXQALRLDGNPL 396
+ L LD NPL
Sbjct: 313 ESVFHSVGNLETLILDSNPL 332
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 33.9 bits (76), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRAELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 274 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXX 333
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 334 XXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 374
+ N L +P G + + + L +NNISA
Sbjct: 248 -----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 18/262 (6%)
Query: 51 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 108
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 109 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 168
+ + + + + L NPL++ S + NG + K
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 169 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 227
R+ + ++ T+ L + EL L+G ++ + + + + KL LS
Sbjct: 175 YIRIADT----------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 228 RNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGF 286
NSI + L++ L+ L L+ NK+ P + +NN + + S+ F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283
Query: 287 KDIPMLQILDLSYNIASLPENP 308
P SY+ SL NP
Sbjct: 284 CP-PGYNTKKASYSGVSLFSNP 304
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 330
NN + ++ FK++ L L L N S F+ L L+ LYL + QL+E P
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 40/93 (43%), Gaps = 22/93 (23%)
Query: 281 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXX 340
+ + F+++P L+ILDL + F L HL EL L L +A
Sbjct: 64 IDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV---------- 113
Query: 341 XXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNI 372
+ +G F+NL +LT LDLS N I
Sbjct: 114 -----------LKDGYFRNLKALTRLDLSKNQI 135
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 23/101 (22%)
Query: 274 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXX 333
D N + +V + K + L L LS+N S +N ++ PHL+EL+L
Sbjct: 200 DGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL------------ 247
Query: 334 XXXXXXXXXXXSQNSLQSIPEGFKNLTSLTELDLSDNNISA 374
+ N L +P G + + + L +NNISA
Sbjct: 248 -----------NNNKLVKVPGGLADHKYIQVVYLHNNNISA 277
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 100/262 (38%), Gaps = 18/262 (6%)
Query: 51 LDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYC 108
LDL N+I I +L + NN +S + P L KL L L NQLKE
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
Query: 109 VEACQXXXXXXXXXXXXXXXXPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 168
+ + + + + L NPL++ S + NG + K
Sbjct: 117 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS--SGIENGAFQGMKKLS 174
Query: 169 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEA-GEITKLDLS 227
R+ + ++ T+ L + EL L+G ++ + + + + KL LS
Sbjct: 175 YIRIADT----------NITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 228 RNSIQELP-PELSSCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGF 286
NSI + L++ L+ L L+ NK+ P + +NN + + S+ F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDF 283
Query: 287 KDIPMLQILDLSYNIASLPENP 308
P SY+ SL NP
Sbjct: 284 CP-PGYNTKKASYSGVSLFSNP 304
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 330
NN + ++ FK++ L L L N S F+ L L+ LYL + QL+E P
Sbjct: 61 NNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 116
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 33.5 bits (75), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 58 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 115
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 116 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 86 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 140
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNDLTE 162
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILS 60
+++L+++ +LT L + + +L L S N L +P +L L LD+ NR+ S
Sbjct: 57 LTQLNLDRCELTKLQVD--GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114
Query: 61 IP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKE 106
+P ++ G L E Y+ N L L P L KL L L +N L E
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 30.0 bits (66), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 345 SQNSLQSIPEGFKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSI 399
S N LQS+P + L +LT LD+S N +++ Q L L GN L+++
Sbjct: 85 SHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 6/104 (5%)
Query: 9 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGS-LSRLIRLDLHQNRILSIP-SSIS 66
N L +S+ L L S N L+ + E + S L L L L+ N I+ + ++
Sbjct: 74 NHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFE 133
Query: 67 GCCSLAEFYMGNNALSALPAEL----GKLSKLGTLDLHSNQLKE 106
L + Y+ N +S P EL KL KL LDL SN+LK+
Sbjct: 134 DMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 28/110 (25%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Query: 224 LDLSRNSIQELPPELS--SCASLQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQV 281
LDLS N++ L E + +L +L+LS N + +N L +
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTL 103
Query: 282 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT 331
F D+ L++L L N + + F + LQ+LYL + Q+ P
Sbjct: 104 DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPV 153
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 310 FSSLPHLQELYLRRMQLREAPTXXXXX-XXXXXXXXSQNSLQSIPEG-FKNLTSLTELDL 367
F L +LQ+LY +L PT + N L+SIP G F NL SLT + L
Sbjct: 53 FDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL 112
Query: 368 SDN 370
+N
Sbjct: 113 YNN 115
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 43/106 (40%), Gaps = 6/106 (5%)
Query: 301 IASLPENPPFSSLPHLQELYLRRMQLRE-APTXXXXXXXXXXXXXSQNSLQSIPEG-FKN 358
+AS+P P Q L+L Q+ + P + N L +IP G F
Sbjct: 24 LASVPAGIPTDK----QRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDK 79
Query: 359 LTSLTELDLSDNNISAXXXXXXXXXXXXQALRLDGNPLRSIRRTIL 404
LT LT+LDL+DN++ + + L NP R I+
Sbjct: 80 LTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRDIM 125
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSI 61
+L + N++T L + L +L + N L +P + L++L +LDL+ N + SI
Sbjct: 37 RLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI 96
Query: 62 P-SSISGCCSLAEFYMGNN 79
P + SL Y+ NN
Sbjct: 97 PRGAFDNLKSLTHIYLYNN 115
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.7 bits (73), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
Query: 63 SSISGCCSLAEF---YMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEAC 112
S I+G L + Y+GNN ++ + L +L+KL TL L NQ+ + AC
Sbjct: 120 SDINGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTLSLEDNQISDIVPLAC 171
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 49/124 (39%), Gaps = 10/124 (8%)
Query: 278 LRQVPSDGFKDIPMLQILDLSYN---IASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 333
L+++P +DIP L +L N + + + F LPHL +L L+R QL P
Sbjct: 20 LKEIP----RDIP-LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAF 74
Query: 334 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 392
+N ++ I F L L L+L DN IS +L L
Sbjct: 75 EGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLA 134
Query: 393 GNPL 396
NP
Sbjct: 135 SNPF 138
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Query: 9 NKLTVLSNNLIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSI-S 66
N++T L + S T LT L + N L +P + L++L L LH N++ SIP +
Sbjct: 50 NQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTKLTHLALHINQLKSIPMGVFD 109
Query: 67 GCCSLAEFYMGNN 79
SL Y+ NN
Sbjct: 110 NLKSLTHIYLFNN 122
Score = 28.9 bits (63), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Query: 35 LNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP-AELGKLSK 93
L +P I + ++++ L ++Q L P L + N L+ALP KL+K
Sbjct: 31 LASVPAGIPTTTQVLHLYINQITKLE-PGVFDSLTQLTYLNLAVNQLTALPVGVFDKLTK 89
Query: 94 LGTLDLHSNQLKE 106
L L LH NQLK
Sbjct: 90 LTHLALHINQLKS 102
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 333
+N LR++P F L ILD +N S E LP L+ L L+ +L + +
Sbjct: 34 HNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNELSQISDQTF 93
Query: 334 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISA 374
NS+ I FKN +L +LDLS N +S+
Sbjct: 94 VFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSS 135
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 7/117 (5%)
Query: 185 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS- 243
+DL + T L++T +L P+ ++ LD NSI +L PEL
Sbjct: 21 DDLPSNITVLNLTHNQLR------RLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPL 74
Query: 244 LQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
L+ L L N++ D +N + ++ S+ FK+ L LDLS+N
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHN 131
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 20/77 (25%)
Query: 297 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTXXXXXXXXXXXXXSQNSLQSIPEGF 356
LSYN F+ +P LQ L LRR+ L+ P F
Sbjct: 437 LSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDIS--------------------PSPF 476
Query: 357 KNLTSLTELDLSDNNIS 373
+ L +LT LDLS+NNI+
Sbjct: 477 RPLRNLTILDLSNNNIA 493
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 333
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 34 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 93
Query: 334 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 392
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 94 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 153
Query: 393 GNPLRSIRRTILDRGTKAVLKYLK 416
N +++++ LD + LK L+
Sbjct: 154 NNKIQALKSEELDIFANSSLKKLE 177
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 185 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 243
+DL T T L++T +L L N + ++T LD+ N+I +L PEL C
Sbjct: 21 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPEL--CQK 71
Query: 244 ---LQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 131
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 333
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 44 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 103
Query: 334 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 392
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 104 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 163
Query: 393 GNPLRSIRRTILDRGTKAVLKYLK 416
N +++++ LD + LK L+
Sbjct: 164 NNKIQALKSEELDIFANSSLKKLE 187
Score = 29.3 bits (64), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 185 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 243
+DL T T L++T +L L N + ++T LD+ N+I +L PEL C
Sbjct: 31 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPEL--CQK 81
Query: 244 ---LQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 82 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 141
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 60/144 (41%), Gaps = 2/144 (1%)
Query: 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTXX 333
+N LR++P+ F L LD+ +N S E LP L+ L L+ +L + +
Sbjct: 39 HNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF 98
Query: 334 XXXXXXXXXXXSQNSLQSIPEG-FKNLTSLTELDLSDNNISAXXXXXXXXXXXXQALRLD 392
NS+Q I F +L LDLS N +S+ Q L L
Sbjct: 99 AFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLS 158
Query: 393 GNPLRSIRRTILDRGTKAVLKYLK 416
N +++++ LD + LK L+
Sbjct: 159 NNKIQALKSEELDIFANSSLKKLE 182
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 13/120 (10%)
Query: 185 EDLITMATRLSVTSKELS-LEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCAS 243
+DL T T L++T +L L N + ++T LD+ N+I +L PEL C
Sbjct: 26 DDLPTNITVLNLTHNQLRRLPAANFT-------RYSQLTSLDVGFNTISKLEPEL--CQK 76
Query: 244 ---LQTLILSRNKIKDWPDAIXXXXXXXXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN 300
L+ L L N++ D +N ++++ ++ F L LDLS+N
Sbjct: 77 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHN 136
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 30.4 bits (67), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 2/88 (2%)
Query: 174 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 233
E A DL+ AT+ + L L + L P + + + + + E
Sbjct: 61 ETRTGRALKATADLLEDATQPGRVA--LELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXE 118
Query: 234 LPPELSSCASLQTLILSRNKIKDWPDAI 261
LP A L+TL L+RN ++ P +I
Sbjct: 119 LPDTXQQFAGLETLTLARNPLRALPASI 146
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 42/91 (46%), Gaps = 10/91 (10%)
Query: 19 IASWTMLTEL-IASKNLLNGMPETIGS---------LSRLIRLDLHQNRILSIPSSISGC 68
IAS L EL I + L +PE + S L L L L I S+P+SI+
Sbjct: 146 IASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANL 205
Query: 69 CSLAEFYMGNNALSALPAELGKLSKLGTLDL 99
+L + N+ LSAL + L KL LDL
Sbjct: 206 QNLKSLKIRNSPLSALGPAIHHLPKLEELDL 236
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 65/172 (37%), Gaps = 23/172 (13%)
Query: 219 GEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNK--------IKDWPDAIXXXXXX 267
G + LDLS N I+ +L + + LQTL LS N+ K+ P
Sbjct: 347 GNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 268 XXXXXXDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 327
P F+++ LQ+L+L+Y + LP L+ L L+ +
Sbjct: 407 TRLHI-------NAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQ 459
Query: 328 EAPTXXXXXXXXX----XXXXSQNSLQSI-PEGFKNLTSLTELDLSDNNISA 374
+ S L SI + F +L ++ +DLS N+++
Sbjct: 460 DGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC 511
>pdb|1LTX|A Chain A, Structure Of Rab Escort Protein-1 In Complex With Rab
Geranylgeranyl Transferase And Isoprenoid
Length = 567
Score = 29.6 bits (65), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 221 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 6/63 (9%)
Query: 200 ELSLEGMNLSA-----IPSEIWEA-GEITKLDLSRNSIQELPPELSSCASLQTLILSRNK 253
E+S+E +NL I S + + +LDL+ + ELP L ++L+ L+LS NK
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANK 312
Query: 254 IKD 256
++
Sbjct: 313 FEN 315
>pdb|1DCE|A Chain A, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
pdb|1DCE|C Chain C, Crystal Structure Of Rab Geranylgeranyltransferase From
Rat Brain
Length = 567
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 221 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256
+T LDLS N ++ LPP L++ L+ L S N +++
Sbjct: 465 VTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 500
>pdb|3G3A|A Chain A, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|C Chain C, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|E Chain E, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
pdb|3G3A|G Chain G, Structure Of A Lamprey Variable Lymphocyte Receptor In
Complex With A Protein Antigen
Length = 178
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 6/114 (5%)
Query: 209 SAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAIXXXXXXX 268
SA PS+ +G T +D S S+ +P + + + Q L L N+I +
Sbjct: 9 SACPSQCSCSG--TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDRLTQL 64
Query: 269 XXXXXDNNPLRQVPSDGFKDIPMLQILDLSYN-IASLPENPPFSSLPHLQELYL 321
DNN L +P+ F + L L L+ N + S+P F +L L ++L
Sbjct: 65 TRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPRG-AFDNLKSLTHIWL 117
Score = 28.1 bits (61), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE 40
+++LD++ N+LTVL + T LT+L + N L +P
Sbjct: 64 LTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIPR 103
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 43/85 (50%), Gaps = 10/85 (11%)
Query: 23 TMLTELIASKNLL---NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 79
T L EL ++N L NG+P LSRL LD N L S+ +L + NN
Sbjct: 85 TKLEELSVNRNRLKNLNGIPS--ACLSRLF-LD---NNELRDTDSLIHLKNLEILSIRNN 138
Query: 80 ALSALPAELGKLSKLGTLDLHSNQL 104
L ++ LG LSKL LDLH N++
Sbjct: 139 KLKSI-VMLGFLSKLEVLDLHGNEI 162
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,227,630
Number of Sequences: 62578
Number of extensions: 341632
Number of successful extensions: 1210
Number of sequences better than 100.0: 91
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 32
Number of HSP's that attempted gapping in prelim test: 681
Number of HSP's gapped (non-prelim): 393
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)