Query 014560
Match_columns 422
No_of_seqs 198 out of 2819
Neff 11.0
Searched_HMMs 46136
Date Fri Mar 29 06:20:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014560.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014560hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4194 Membrane glycoprotein 100.0 1.6E-39 3.5E-44 288.7 6.3 370 2-406 55-438 (873)
2 PLN00113 leucine-rich repeat r 100.0 3.3E-35 7.1E-40 302.6 25.2 391 1-404 142-567 (968)
3 KOG0472 Leucine-rich repeat pr 100.0 4.5E-39 9.7E-44 273.7 -3.1 390 2-420 163-564 (565)
4 PLN00113 leucine-rich repeat r 100.0 7.2E-35 1.6E-39 300.1 26.2 386 1-401 95-516 (968)
5 KOG4194 Membrane glycoprotein 100.0 3E-37 6.4E-42 274.3 2.7 377 2-420 81-469 (873)
6 KOG0444 Cytoskeletal regulator 100.0 6.2E-35 1.3E-39 262.0 -3.4 353 3-396 11-374 (1255)
7 KOG0444 Cytoskeletal regulator 100.0 9.6E-33 2.1E-37 248.0 -0.9 353 1-392 34-394 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 4.9E-33 1.1E-37 237.1 -6.6 399 2-403 48-524 (565)
9 KOG0618 Serine/threonine phosp 100.0 4.4E-31 9.6E-36 246.9 -1.5 388 1-406 47-498 (1081)
10 KOG0618 Serine/threonine phosp 99.9 8.5E-30 1.8E-34 238.4 -4.6 391 2-399 24-467 (1081)
11 PLN03210 Resistant to P. syrin 99.9 3.2E-24 7E-29 221.7 27.5 335 13-394 548-903 (1153)
12 PLN03210 Resistant to P. syrin 99.9 1.9E-21 4.1E-26 201.2 25.8 312 14-375 580-909 (1153)
13 PRK15387 E3 ubiquitin-protein 99.9 5E-22 1.1E-26 191.5 17.9 257 24-350 202-458 (788)
14 PRK15387 E3 ubiquitin-protein 99.9 7.6E-22 1.7E-26 190.3 19.0 258 46-373 201-458 (788)
15 KOG4237 Extracellular matrix p 99.9 1E-23 2.2E-28 180.0 -2.5 368 3-409 71-489 (498)
16 KOG4237 Extracellular matrix p 99.8 1.2E-22 2.7E-27 173.5 -2.3 166 238-406 270-466 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 6.4E-20 1.4E-24 178.2 13.1 247 24-327 179-428 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 1.3E-19 2.8E-24 176.1 13.5 100 46-152 178-277 (754)
19 KOG0617 Ras suppressor protein 99.7 7.1E-20 1.5E-24 139.1 -2.6 202 214-417 28-232 (264)
20 KOG0617 Ras suppressor protein 99.7 2.5E-19 5.4E-24 136.1 -2.8 155 2-157 36-193 (264)
21 cd00116 LRR_RI Leucine-rich re 99.7 1E-17 2.3E-22 151.3 0.5 104 2-105 1-121 (319)
22 cd00116 LRR_RI Leucine-rich re 99.6 5.1E-17 1.1E-21 146.8 -1.0 60 337-396 250-319 (319)
23 KOG0532 Leucine-rich repeat (L 99.3 3.1E-14 6.7E-19 128.2 -5.8 190 222-417 78-267 (722)
24 KOG0532 Leucine-rich repeat (L 99.3 1.1E-13 2.4E-18 124.7 -3.1 196 27-259 54-251 (722)
25 COG4886 Leucine-rich repeat (L 99.3 5.5E-12 1.2E-16 117.3 7.9 120 28-147 98-219 (394)
26 PF14580 LRR_9: Leucine-rich r 99.3 4.7E-12 1E-16 100.9 4.8 98 6-107 4-103 (175)
27 COG4886 Leucine-rich repeat (L 99.3 1.9E-11 4.1E-16 113.7 9.6 194 73-305 97-292 (394)
28 KOG1909 Ran GTPase-activating 99.3 3.8E-13 8.2E-18 114.3 -1.8 134 240-373 155-311 (382)
29 PF14580 LRR_9: Leucine-rich r 99.2 7.1E-12 1.5E-16 99.8 2.5 122 267-393 20-149 (175)
30 KOG1909 Ran GTPase-activating 99.2 5.1E-12 1.1E-16 107.5 1.0 214 191-404 25-290 (382)
31 KOG3207 Beta-tubulin folding c 99.2 1.5E-11 3.2E-16 107.8 2.8 130 21-150 119-259 (505)
32 KOG1259 Nischarin, modulator o 99.2 1.7E-11 3.8E-16 102.3 2.9 185 212-401 207-416 (490)
33 KOG1259 Nischarin, modulator o 99.1 4.7E-11 1E-15 99.7 1.9 130 220-354 285-416 (490)
34 KOG4658 Apoptotic ATPase [Sign 99.1 1.3E-10 2.8E-15 115.7 5.1 128 19-147 519-652 (889)
35 KOG3207 Beta-tubulin folding c 99.1 2.9E-11 6.2E-16 106.0 0.5 200 196-396 121-338 (505)
36 KOG0531 Protein phosphatase 1, 99.0 1.1E-10 2.4E-15 108.7 0.0 127 22-149 71-198 (414)
37 KOG4658 Apoptotic ATPase [Sign 98.9 9.8E-10 2.1E-14 109.5 6.3 103 1-103 547-653 (889)
38 KOG0531 Protein phosphatase 1, 98.9 1.9E-10 4E-15 107.2 0.7 174 220-401 141-322 (414)
39 PF13855 LRR_8: Leucine rich r 98.9 7E-10 1.5E-14 72.7 2.9 57 1-57 3-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 7.8E-09 1.7E-13 67.7 3.7 57 244-300 3-59 (61)
41 PLN03150 hypothetical protein; 98.6 9.9E-08 2.1E-12 93.2 7.5 102 24-125 419-526 (623)
42 PLN03150 hypothetical protein; 98.6 1E-07 2.2E-12 93.1 7.4 105 291-395 419-526 (623)
43 KOG1859 Leucine-rich repeat pr 98.5 9.7E-10 2.1E-14 102.5 -9.5 179 212-401 102-296 (1096)
44 KOG2120 SCF ubiquitin ligase, 98.4 3.7E-09 8.1E-14 88.5 -6.2 174 47-300 186-373 (419)
45 KOG1859 Leucine-rich repeat pr 98.4 1.1E-08 2.3E-13 95.8 -4.2 120 3-126 168-291 (1096)
46 COG5238 RNA1 Ran GTPase-activa 98.4 4.3E-08 9.4E-13 81.2 -0.3 87 19-105 26-133 (388)
47 KOG4579 Leucine-rich repeat (L 98.4 1.6E-08 3.4E-13 74.8 -2.7 108 23-130 27-139 (177)
48 PF13306 LRR_5: Leucine rich r 98.3 2.2E-06 4.7E-11 66.0 7.3 9 241-249 11-19 (129)
49 PF12799 LRR_4: Leucine Rich r 98.3 1E-06 2.3E-11 52.6 4.0 39 70-108 2-40 (44)
50 KOG1644 U2-associated snRNP A' 98.3 1.6E-06 3.5E-11 68.8 6.0 125 199-324 22-150 (233)
51 KOG2120 SCF ubiquitin ligase, 98.3 3.2E-08 7E-13 83.0 -3.8 125 24-148 186-324 (419)
52 COG5238 RNA1 Ran GTPase-activa 98.3 6.1E-07 1.3E-11 74.5 3.5 137 263-400 89-258 (388)
53 PF12799 LRR_4: Leucine Rich r 98.2 6.9E-07 1.5E-11 53.4 2.4 36 338-373 2-37 (44)
54 PF13306 LRR_5: Leucine rich r 98.2 3.8E-06 8.2E-11 64.6 6.5 123 258-386 4-128 (129)
55 KOG1644 U2-associated snRNP A' 98.2 3.3E-06 7.1E-11 67.2 5.6 82 244-327 44-126 (233)
56 KOG3665 ZYG-1-like serine/thre 98.2 6.5E-07 1.4E-11 87.4 1.9 104 1-105 124-233 (699)
57 KOG4341 F-box protein containi 98.2 1.3E-07 2.9E-12 83.0 -2.7 299 115-421 139-466 (483)
58 KOG4579 Leucine-rich repeat (L 98.2 1.8E-07 4E-12 69.3 -1.6 112 3-114 31-145 (177)
59 PRK15386 type III secretion pr 98.1 3.3E-05 7.2E-10 69.8 11.9 52 196-252 52-104 (426)
60 KOG2982 Uncharacterized conser 98.1 1E-06 2.2E-11 74.2 0.9 83 67-149 69-158 (418)
61 KOG4341 F-box protein containi 98.0 1.8E-07 4E-12 82.2 -4.4 153 239-392 291-460 (483)
62 KOG2982 Uncharacterized conser 97.9 2.7E-06 5.9E-11 71.7 0.2 199 193-392 68-287 (418)
63 PRK15386 type III secretion pr 97.8 0.00049 1.1E-08 62.4 12.5 153 217-394 50-210 (426)
64 KOG3665 ZYG-1-like serine/thre 97.7 2.5E-05 5.3E-10 76.6 2.7 104 219-324 122-230 (699)
65 KOG2739 Leucine-rich acidic nu 97.2 0.0001 2.2E-09 61.4 0.6 85 240-327 41-129 (260)
66 KOG2123 Uncharacterized conser 97.1 2.8E-05 6.1E-10 65.1 -3.3 74 3-79 23-98 (388)
67 KOG2739 Leucine-rich acidic nu 97.1 0.00023 5E-09 59.3 2.0 87 19-106 39-130 (260)
68 KOG2123 Uncharacterized conser 97.1 2.5E-05 5.5E-10 65.4 -4.1 83 21-105 17-101 (388)
69 PF00560 LRR_1: Leucine Rich R 96.3 0.0015 3.3E-08 32.3 0.7 18 48-65 2-19 (22)
70 PF00560 LRR_1: Leucine Rich R 96.2 0.0019 4.1E-08 31.9 0.6 20 1-21 2-21 (22)
71 KOG0473 Leucine-rich repeat pr 96.1 0.00015 3.2E-09 59.3 -5.8 95 11-105 30-124 (326)
72 PF13504 LRR_7: Leucine rich r 95.3 0.012 2.6E-07 26.9 1.3 12 339-350 3-14 (17)
73 KOG1947 Leucine rich repeat pr 95.2 0.0016 3.4E-08 62.6 -3.5 108 195-302 187-307 (482)
74 PF13504 LRR_7: Leucine rich r 95.2 0.011 2.3E-07 27.0 1.1 15 361-375 2-16 (17)
75 KOG0473 Leucine-rich repeat pr 95.1 0.0018 3.9E-08 53.1 -2.8 80 2-82 45-124 (326)
76 smart00370 LRR Leucine-rich re 94.7 0.031 6.6E-07 28.8 2.2 22 384-405 2-23 (26)
77 smart00369 LRR_TYP Leucine-ric 94.7 0.031 6.6E-07 28.8 2.2 22 384-405 2-23 (26)
78 KOG1947 Leucine rich repeat pr 94.3 0.0046 1E-07 59.3 -2.8 156 218-373 187-375 (482)
79 smart00370 LRR Leucine-rich re 93.9 0.048 1E-06 28.1 1.9 22 360-381 2-23 (26)
80 smart00369 LRR_TYP Leucine-ric 93.9 0.048 1E-06 28.1 1.9 22 360-381 2-23 (26)
81 KOG4308 LRR-containing protein 92.5 0.003 6.5E-08 59.5 -7.1 79 3-81 91-184 (478)
82 KOG4308 LRR-containing protein 92.5 0.00067 1.5E-08 63.8 -11.4 126 25-150 89-246 (478)
83 PF13516 LRR_6: Leucine Rich r 90.3 0.14 2.9E-06 25.7 0.8 18 384-401 2-19 (24)
84 KOG3864 Uncharacterized conser 88.9 0.049 1.1E-06 44.1 -2.2 76 24-102 102-186 (221)
85 KOG3864 Uncharacterized conser 87.6 0.12 2.6E-06 41.8 -0.8 34 291-324 102-135 (221)
86 smart00364 LRR_BAC Leucine-ric 85.6 0.61 1.3E-05 23.9 1.4 17 338-354 3-19 (26)
87 smart00368 LRR_RI Leucine rich 81.7 1.4 3E-05 23.1 1.9 19 384-402 2-20 (28)
88 smart00365 LRR_SD22 Leucine-ri 79.3 1.8 4E-05 22.2 1.8 14 361-374 3-16 (26)
89 KOG3763 mRNA export factor TAP 75.1 2.5 5.4E-05 40.1 2.7 35 313-347 217-254 (585)
90 smart00367 LRR_CC Leucine-rich 69.4 3.7 7.9E-05 20.9 1.5 12 384-395 2-13 (26)
91 KOG3763 mRNA export factor TAP 54.1 4.2 9.1E-05 38.6 -0.0 64 287-350 215-283 (585)
92 KOG4242 Predicted myosin-I-bin 51.7 1.1E+02 0.0023 29.1 8.3 16 241-256 439-454 (553)
93 TIGR00864 PCC polycystin catio 39.0 17 0.00037 42.0 1.6 32 5-36 1-32 (2740)
94 PF05725 FNIP: FNIP Repeat; I 21.5 1.2E+02 0.0025 17.8 2.5 6 94-99 14-19 (44)
No 1
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=1.6e-39 Score=288.66 Aligned_cols=370 Identities=24% Similarity=0.321 Sum_probs=310.5
Q ss_pred ceeeccCCcceecChhHHhhc--ccccceecccccccCC-chhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASW--TMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGN 78 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~--~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~ 78 (422)
+.||++++.+..+....+.+. +.-++|++++|.+..+ ++.|.++++|+.+++.+|.++.+|.......+|+.|+|.+
T Consensus 55 ~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~ 134 (873)
T KOG4194|consen 55 RLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRH 134 (873)
T ss_pred eeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeec
Confidence 357889999988877766666 4556699999999887 5788999999999999999999998777777899999999
Q ss_pred CcCccC-chhhhCCCCCcEEEccCCcccccccccccce--ecEEEcCCCCCCCCC-ccccccCCccEEEcCCCccccccc
Q 014560 79 NALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 79 ~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~--L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~ 154 (422)
|.|+++ .+.+..++.|++||++.|.++.++...++.+ +++|++++|.++.+. ..|..+.+|..|.++.|.++.++.
T Consensus 135 N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~ 214 (873)
T KOG4194|consen 135 NLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQ 214 (873)
T ss_pred cccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCH
Confidence 999987 5669999999999999999999888777664 999999999999853 458888999999999999988876
Q ss_pred cccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCC-CcccccCCCccEEeCCCCcccc
Q 014560 155 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE 233 (422)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~ 233 (422)
..|.. ...++.+++..|.+..+ ...+.++++|+.|.+..|++..
T Consensus 215 r~Fk~-----------------------------------L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~k 259 (873)
T KOG4194|consen 215 RSFKR-----------------------------------LPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISK 259 (873)
T ss_pred HHhhh-----------------------------------cchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCccc
Confidence 55531 14567778887777755 3445567888889999998888
Q ss_pred CCcc-ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCC
Q 014560 234 LPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 312 (422)
Q Consensus 234 ~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 312 (422)
+.+. |..+.++++|+++.|++.....+.+-++.+|+.|+++.|.+..+....|..+++|+.|+++.|.++...+..|..
T Consensus 260 L~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~ 339 (873)
T KOG4194|consen 260 LDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRV 339 (873)
T ss_pred ccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHH
Confidence 7655 778889999999999888888777788899999999999998888888888999999999999999888888888
Q ss_pred CccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCc----ccCccCcCCCCCCEEeCCCCCCcccCCccccCCcccc
Q 014560 313 LPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ----SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 387 (422)
Q Consensus 313 ~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~----~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (422)
+..|++|+++.|.+..+.+. |.++++|++||++.|.+. .-...|..+++|+.|++.||+++.|+.-.+..++.|+
T Consensus 340 L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE 419 (873)
T KOG4194|consen 340 LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALE 419 (873)
T ss_pred HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccc
Confidence 89999999999988877655 567789999999999876 2244588889999999999999988888888889999
Q ss_pred EEEccCCCCCccchHHHhh
Q 014560 388 ALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 388 ~l~l~~n~~~~i~~~~~~~ 406 (422)
.||+.+|.+.+|.+.+|+.
T Consensus 420 ~LdL~~NaiaSIq~nAFe~ 438 (873)
T KOG4194|consen 420 HLDLGDNAIASIQPNAFEP 438 (873)
T ss_pred eecCCCCcceeeccccccc
Confidence 9999999999998888765
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=3.3e-35 Score=302.58 Aligned_cols=391 Identities=31% Similarity=0.380 Sum_probs=256.6
Q ss_pred CceeeccCCcceecChhHHhhcccccceeccccccc-CCchhhhccccCCeEeccCCccc-cCCCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~ 78 (422)
|++|++++|.+.......+.++++|++|++++|.+. .+|..+.++++|++|++++|.+. .+|..+.++++|++|++++
T Consensus 142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~ 221 (968)
T PLN00113 142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGY 221 (968)
T ss_pred CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcC
Confidence 678999999987443344899999999999999884 66888899999999999999877 5688888899999999999
Q ss_pred CcCc-cCchhhhCCCCCcEEEccCCccc-ccccccccce-ecEEEcCCCCCCC-CCccccccCCccEEEcCCCccccccc
Q 014560 79 NALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 79 ~~i~-~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~ 154 (422)
|.+. .+|..+.++++|++|++++|.+. .++..+.... |+.|++++|.+.+ +|..+..+++|++|++++|.+.....
T Consensus 222 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 222 NNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 8887 67888889999999999988876 4555555554 8888888888765 67778888888888888887643211
Q ss_pred cccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcccccCCCccEEeCCCC----
Q 014560 155 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRN---- 229 (422)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~---- 229 (422)
. .+..+.. +..+....... ............+++.+++++|.+. .+|..+..+++|+.|++++|
T Consensus 302 ~--------~~~~l~~-L~~L~l~~n~~--~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~ 370 (968)
T PLN00113 302 E--------LVIQLQN-LEILHLFSNNF--TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG 370 (968)
T ss_pred h--------hHcCCCC-CcEEECCCCcc--CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEe
Confidence 1 1110000 00000000000 0000000111234445555544444 33444444444455555444
Q ss_pred --------------------cccc-CCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCC
Q 014560 230 --------------------SIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKD 288 (422)
Q Consensus 230 --------------------~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 288 (422)
.+.. +|..+..+++|+.+++++|.+....+..+..+++|+.+++++|.+....+..+..
T Consensus 371 ~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 450 (968)
T PLN00113 371 EIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWD 450 (968)
T ss_pred eCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhcc
Confidence 4432 3444555556666666666555444444555666666666666655544444555
Q ss_pred CCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc-cCCcccccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEe
Q 014560 289 IPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELD 366 (422)
Q Consensus 289 ~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~ 366 (422)
+++|+.|++++|.+.+..+..+ ..++|+.|++++|.+. .+|..+.++++|+.|++++|.+. .+|+.+.++++|+.|+
T Consensus 451 l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 529 (968)
T PLN00113 451 MPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529 (968)
T ss_pred CCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEE
Confidence 6666666666666655444333 3467777888877776 55666777888888899888887 5678888889999999
Q ss_pred CCCCCCc-ccCCccccCCccccEEEccCCCCCccchHHH
Q 014560 367 LSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 367 l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~ 404 (422)
+++|.++ .+|..+..+ ++|+.|++++|++...-+..+
T Consensus 530 Ls~N~l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~l 567 (968)
T PLN00113 530 LSHNQLSGQIPASFSEM-PVLSQLDLSQNQLSGEIPKNL 567 (968)
T ss_pred CCCCcccccCChhHhCc-ccCCEEECCCCcccccCChhH
Confidence 9999887 555556555 899999999998875434333
No 3
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=100.00 E-value=4.5e-39 Score=273.75 Aligned_cols=390 Identities=39% Similarity=0.597 Sum_probs=288.9
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
..+++.+|++...+...+. |+.|+.|+..+|.++++|..++.+.+|.-|++..|.+..+| .|.+|..|.++.++.|.+
T Consensus 163 ~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i 240 (565)
T KOG0472|consen 163 SKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQI 240 (565)
T ss_pred HHhhccccchhhCCHHHHH-HHHHHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHH
Confidence 3567778888888877554 88888888888888889888889999999999999998888 688999999999999999
Q ss_pred ccCchhhh-CCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCC
Q 014560 82 SALPAELG-KLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 159 (422)
Q Consensus 82 ~~l~~~l~-~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (422)
..+|+... .+++|.+||+.+|+++++|..++..+ |+.|++++|.++.+|..++++ .|+.|.+.||++.++...+..+
T Consensus 241 ~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~ 319 (565)
T KOG0472|consen 241 EMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISK 319 (565)
T ss_pred HhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcc
Confidence 99987755 78999999999999999999999998 999999999999999999999 9999999999999999999999
Q ss_pred CChHHHHHHHccCCCCccccccchhhh------HHHhhhccccccceeeccCCCCCCCCcccccCCC---ccEEeCCCCc
Q 014560 160 PTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSEIWEAGE---ITKLDLSRNS 230 (422)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~---L~~L~l~~~~ 230 (422)
+..+.++++..++.............. ..........+.+.+++++-.++.+|...+...+ ++.+++++|+
T Consensus 320 gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 320 GTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQ 399 (565)
T ss_pred cHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccch
Confidence 999999999875443222111111000 0000111112344455555555555555544322 5555555555
Q ss_pred cccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCC
Q 014560 231 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPF 310 (422)
Q Consensus 231 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~ 310 (422)
+.++|..+..+..+.+.-+..++..++.+..++.+++|..|++++|.+.++|.+ +
T Consensus 400 L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e-------------------------~ 454 (565)
T KOG0472|consen 400 LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEE-------------------------M 454 (565)
T ss_pred HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchh-------------------------h
Confidence 555554443333332222222222333333334444444455444444444433 3
Q ss_pred CCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCcc-CcCCCCCCEEeCCCCCCcccCCccccCCccccEE
Q 014560 311 SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 389 (422)
Q Consensus 311 ~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l 389 (422)
+.+..|+.++++.|.+..+|.++.....++.+-.++|.++.++.. +.++.+|.+||+.+|.+..+|..+..+ .+|++|
T Consensus 455 ~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~Lgnm-tnL~hL 533 (565)
T KOG0472|consen 455 GSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNM-TNLRHL 533 (565)
T ss_pred hhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChhhccc-cceeEE
Confidence 444557777777777777888877777888888888999988554 899999999999999999999999988 999999
Q ss_pred EccCCCCCccchHHHhhhHHHHHHHHHhhCC
Q 014560 390 RLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 420 (422)
Q Consensus 390 ~l~~n~~~~i~~~~~~~~~~~~~~~~~~~~p 420 (422)
.+++|+|+.-+..+..+++.+++.|+|+++|
T Consensus 534 eL~gNpfr~Pr~~iLmkgT~aiL~ylrdrIp 564 (565)
T KOG0472|consen 534 ELDGNPFRQPRHQILMKGTAAILSYLRDRIP 564 (565)
T ss_pred EecCCccCCCHHHHhccChHHHHHHhcccCC
Confidence 9999999977788999999999999999998
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.2e-35 Score=300.06 Aligned_cols=386 Identities=29% Similarity=0.358 Sum_probs=211.1
Q ss_pred CceeeccCCcce-ecChhHHhhcccccceeccccccc-CCchhhhccccCCeEeccCCccc-cCCCCCccCCCCCEEEcC
Q 014560 1 MSKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMG 77 (422)
Q Consensus 1 L~~L~ls~~~i~-~i~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~ 77 (422)
|++|++++|++. .+|...+.++++|++|++++|.+. .+|. ..+++|++|++++|.+. .+|..+.++++|++|+++
T Consensus 95 L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 172 (968)
T PLN00113 95 IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLG 172 (968)
T ss_pred CCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECc
Confidence 466677777665 566665656677777777666664 2332 34566777777777665 557778888888888888
Q ss_pred CCcCc-cCchhhhCCCCCcEEEccCCccc-ccccccccce-ecEEEcCCCCCCC-CCccccccCCccEEEcCCCcccccc
Q 014560 78 NNALS-ALPAELGKLSKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLR 153 (422)
Q Consensus 78 ~~~i~-~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~-L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~ 153 (422)
+|.+. .+|..+.++++|++|++++|.+. .+|..+...+ |+.|++++|.+.. +|..+..+++|++|++++|.+....
T Consensus 173 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~ 252 (968)
T PLN00113 173 GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPI 252 (968)
T ss_pred cCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceecccc
Confidence 88876 67888888888888888888876 4555555554 8888888888775 7777888888888888888764211
Q ss_pred ccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcccccCCCccEEeCCCCccc
Q 014560 154 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQ 232 (422)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~ 232 (422)
|..+..+.. +..+........ ...........+++.+++++|.+. .+|..+..+++|+.|++++|.+.
T Consensus 253 --------p~~l~~l~~-L~~L~L~~n~l~--~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~ 321 (968)
T PLN00113 253 --------PSSLGNLKN-LQYLFLYQNKLS--GPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFT 321 (968)
T ss_pred --------ChhHhCCCC-CCEEECcCCeee--ccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccC
Confidence 111111100 000000000000 000001111234555555555544 34444455555666666655554
Q ss_pred c-CCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCC
Q 014560 233 E-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFS 311 (422)
Q Consensus 233 ~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 311 (422)
. +|..+..+++|+.|++++|.+....+..+..+++|+.++++.|.+....+..+..+++|+.+++++|.+.+..+..+.
T Consensus 322 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~ 401 (968)
T PLN00113 322 GKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLG 401 (968)
T ss_pred CcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHh
Confidence 3 444455555566666655555543333445555555555555554433333344444444444444444444444444
Q ss_pred CCccCceEEeCCCcCc-cCCcccc------------------------cCCCCcEEECCCCCCc-ccCccCcCCCCCCEE
Q 014560 312 SLPHLQELYLRRMQLR-EAPTDIL------------------------RLQQLRILDLSQNSLQ-SIPEGFKNLTSLTEL 365 (422)
Q Consensus 312 ~~~~L~~L~l~~~~i~-~l~~~~~------------------------~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L 365 (422)
.+++|+.|++++|.++ .+|..+. .+++|+.|++++|.+. .+|..+ ..++|+.|
T Consensus 402 ~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L 480 (968)
T PLN00113 402 ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENL 480 (968)
T ss_pred CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEE
Confidence 4444444444444443 2333344 4455555555555444 223322 23455556
Q ss_pred eCCCCCCc-ccCCccccCCccccEEEccCCCCCccch
Q 014560 366 DLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 366 ~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
++++|+++ .+|..+..+ ++|+.|++++|.+....+
T Consensus 481 ~ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~p 516 (968)
T PLN00113 481 DLSRNQFSGAVPRKLGSL-SELMQLKLSENKLSGEIP 516 (968)
T ss_pred ECcCCccCCccChhhhhh-hccCEEECcCCcceeeCC
Confidence 66665554 333333333 566666666666554333
No 5
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3e-37 Score=274.34 Aligned_cols=377 Identities=26% Similarity=0.344 Sum_probs=325.1
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCc
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 80 (422)
+.||+|+|.+..+.-..|.++++|+.+++.+|.++.+|.......+|+.|++.+|.|+.+ .+.++-++.|++++|+.|.
T Consensus 81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~ 160 (873)
T KOG4194|consen 81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNL 160 (873)
T ss_pred eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhch
Confidence 469999999999998889999999999999999999998877888999999999999977 5678889999999999999
Q ss_pred CccCch-hhhCCCCCcEEEccCCcccccccccccc--eecEEEcCCCCCCCCCcc-ccccCCccEEEcCCCccccccccc
Q 014560 81 LSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSL 156 (422)
Q Consensus 81 i~~l~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 156 (422)
|+++|. +|..-.++++|++++|.|+.+..+.+.. .|..|.+++|+++.+|.. |..+++|+.|++..|.+..+....
T Consensus 161 is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~lt 240 (873)
T KOG4194|consen 161 ISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLT 240 (873)
T ss_pred hhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhh
Confidence 998865 4677789999999999999887765543 399999999999998765 666999999999999886553333
Q ss_pred cCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccc-cCCCccEEeCCCCccccCC
Q 014560 157 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQELP 235 (422)
Q Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~~~ 235 (422)
|.+ ..+++.+.+..|++..+..+++ .+.++++|+++.|++..+.
T Consensus 241 Fqg-----------------------------------L~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn 285 (873)
T KOG4194|consen 241 FQG-----------------------------------LPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVN 285 (873)
T ss_pred hcC-----------------------------------chhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhh
Confidence 322 2477888899998887766554 5899999999999998854
Q ss_pred -ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCc
Q 014560 236 -PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 314 (422)
Q Consensus 236 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 314 (422)
.++.+++.|+.|++++|.|..+....++.+++|++|+++.|+++.++++.|..+..|+.|.++.|.+.......|..+.
T Consensus 286 ~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~ls 365 (873)
T KOG4194|consen 286 EGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLS 365 (873)
T ss_pred cccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhh
Confidence 3588999999999999999998888889999999999999999999999999999999999999999998888899999
Q ss_pred cCceEEeCCCcCc----cCCcccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCCcccCCccccCCccccEE
Q 014560 315 HLQELYLRRMQLR----EAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 389 (422)
Q Consensus 315 ~L~~L~l~~~~i~----~l~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l 389 (422)
+|++|+++.|.+. .....+.++++|+.|++.||+++.+|. +|.+++.|++|++.+|.|.+|-...|.- ..|++|
T Consensus 366 sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~-m~Lk~L 444 (873)
T KOG4194|consen 366 SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEP-MELKEL 444 (873)
T ss_pred hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccccc-chhhhh
Confidence 9999999999876 333346789999999999999999865 5999999999999999999888888777 488888
Q ss_pred EccCCCCCccchHHHhhhHHHHHHHHHhhCC
Q 014560 390 RLDGNPLRSIRRTILDRGTKAVLKYLKDKIP 420 (422)
Q Consensus 390 ~l~~n~~~~i~~~~~~~~~~~~~~~~~~~~p 420 (422)
.+..-.+ ++++..+++..|+.++.|
T Consensus 445 v~nSssf------lCDCql~Wl~qWl~~~~l 469 (873)
T KOG4194|consen 445 VMNSSSF------LCDCQLKWLAQWLYRRKL 469 (873)
T ss_pred hhcccce------EEeccHHHHHHHHHhccc
Confidence 8775443 356677788888877655
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=6.2e-35 Score=262.02 Aligned_cols=353 Identities=26% Similarity=0.391 Sum_probs=290.4
Q ss_pred eeeccCCcce--ecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 3 KLDVEGNKLT--VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 3 ~L~ls~~~i~--~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
-+|+|+|.++ ..|.+ ...++.++-|.|....+..+|+.++.+.+|++|.+++|.+..+-..+..++.|+.+.+..|+
T Consensus 11 GvDfsgNDFsg~~FP~~-v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~ 89 (1255)
T KOG0444|consen 11 GVDFSGNDFSGDRFPHD-VEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNN 89 (1255)
T ss_pred cccccCCcCCCCcCchh-HHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccc
Confidence 4688888887 57776 88888999999988888888988989999999999998888776778888888988888888
Q ss_pred Cc--cCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCcc-ccccCCccEEEcCCCccccccccc
Q 014560 81 LS--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSL 156 (422)
Q Consensus 81 i~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~ 156 (422)
+. .+|..+.++..|..||+|+|++...|..+-..+ +..|++++|+|..+|.. +.+++.|-.|+++.|.+..+|..+
T Consensus 90 LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~ 169 (1255)
T KOG0444|consen 90 LKNSGIPTDIFRLKDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQI 169 (1255)
T ss_pred cccCCCCchhcccccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHH
Confidence 76 678888888899999999999888888877776 88888999988888776 567888888888888887665444
Q ss_pred cCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCC-CcccccCCCccEEeCCCCcc--cc
Q 014560 157 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSI--QE 233 (422)
Q Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l--~~ 233 (422)
-.. ..++.+.+++|.+..+ ..-+..+++|+.|++++.+- ..
T Consensus 170 RRL------------------------------------~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N 213 (1255)
T KOG0444|consen 170 RRL------------------------------------SMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDN 213 (1255)
T ss_pred HHH------------------------------------hhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhc
Confidence 321 3567777777765521 12233467888899988753 34
Q ss_pred CCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCC
Q 014560 234 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 313 (422)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 313 (422)
+|.++..+.+|+.++++.|++..+|.. +-.+++|+.|++++|.++.+... .....+|++|++++|.++.. +..++.+
T Consensus 214 ~Ptsld~l~NL~dvDlS~N~Lp~vPec-ly~l~~LrrLNLS~N~iteL~~~-~~~W~~lEtLNlSrNQLt~L-P~avcKL 290 (1255)
T KOG0444|consen 214 IPTSLDDLHNLRDVDLSENNLPIVPEC-LYKLRNLRRLNLSGNKITELNMT-EGEWENLETLNLSRNQLTVL-PDAVCKL 290 (1255)
T ss_pred CCCchhhhhhhhhccccccCCCcchHH-HhhhhhhheeccCcCceeeeecc-HHHHhhhhhhccccchhccc-hHHHhhh
Confidence 888899999999999999988887765 56789999999999999887654 56678999999999988755 4567888
Q ss_pred ccCceEEeCCCcCc--cCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEc
Q 014560 314 PHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRL 391 (422)
Q Consensus 314 ~~L~~L~l~~~~i~--~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l 391 (422)
++|+.|++.+|+++ .+|.+++.+..|+.+..++|.+.-+|+++..|..|+.|.++.|.+-++|+.+.-+ +.|++||+
T Consensus 291 ~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL-~~l~vLDl 369 (1255)
T KOG0444|consen 291 TKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLL-PDLKVLDL 369 (1255)
T ss_pred HHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhc-CCcceeec
Confidence 99999999999776 8999999999999999999999999999999999999999999999999888777 99999999
Q ss_pred cCCCC
Q 014560 392 DGNPL 396 (422)
Q Consensus 392 ~~n~~ 396 (422)
+.|+-
T Consensus 370 reNpn 374 (1255)
T KOG0444|consen 370 RENPN 374 (1255)
T ss_pred cCCcC
Confidence 99863
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=9.6e-33 Score=248.02 Aligned_cols=353 Identities=25% Similarity=0.317 Sum_probs=302.6
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccc--cCCCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~ 78 (422)
++.|.|.+.++..+|.. ++++.+|+.|++++|.+..+...+..++.||.+.+..|.+. .+|+.+..+..|+.|+++.
T Consensus 34 ~~WLkLnrt~L~~vPeE-L~~lqkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLSh 112 (1255)
T KOG0444|consen 34 MTWLKLNRTKLEQVPEE-LSRLQKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSH 112 (1255)
T ss_pred eeEEEechhhhhhChHH-HHHHhhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecch
Confidence 36788888889999988 99999999999999999999888999999999999999887 7799999999999999999
Q ss_pred CcCccCchhhhCCCCCcEEEccCCcccccccccccce--ecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccc
Q 014560 79 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR--LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 156 (422)
Q Consensus 79 ~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~--L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 156 (422)
|++.+.|..+.+.+++-+|++|+|+|..+|...+..- |-.|+++.|++..+|..+..+..|++|.+++|++..+.-..
T Consensus 113 NqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 113 NQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred hhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 9999999999999999999999999999998876643 88999999999999999999999999999999875432111
Q ss_pred cCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC--CCCcccccCCCccEEeCCCCccccC
Q 014560 157 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS--AIPSEIWEAGEITKLDLSRNSIQEL 234 (422)
Q Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~--~~~~~~~~~~~L~~L~l~~~~l~~~ 234 (422)
. ..-.+++.+++++..-+ .+|..+-.+.+|..++++.|++..+
T Consensus 193 L-----------------------------------PsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~v 237 (1255)
T KOG0444|consen 193 L-----------------------------------PSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIV 237 (1255)
T ss_pred C-----------------------------------ccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcc
Confidence 1 01146677777766533 7888888899999999999999999
Q ss_pred CccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCC-CCCCCCCCCC
Q 014560 235 PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSL 313 (422)
Q Consensus 235 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~ 313 (422)
|.-+.++.+|+.|++++|.++.+.... ..-.+|++|+++.|+++.+|.. +..+++|+.|-..+|+++ ..+++.++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~iteL~~~~-~~W~~lEtLNlSrNQLt~LP~a-vcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITELNMTE-GEWENLETLNLSRNQLTVLPDA-VCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceeeeeccH-HHHhhhhhhccccchhccchHH-HhhhHHHHHHHhccCcccccCCccchhhh
Confidence 998999999999999999998865432 3346899999999999988765 889999999999999887 3457789999
Q ss_pred ccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCC-CcccCCccccCCccccEEEcc
Q 014560 314 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNN-ISALPPELGLLEPSLQALRLD 392 (422)
Q Consensus 314 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~ 392 (422)
.+|+.+...+|++.-+|++++.|+.|+.|.++.|.+-++|+++.-++.|+.||+..|. +..-|..-..- .+++.-++.
T Consensus 316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLVMPPKP~da~-~~lefYNID 394 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLVMPPKPNDAR-KKLEFYNID 394 (1255)
T ss_pred hhhHHHHhhccccccCchhhhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCccCCCCcchhh-hcceeeecc
Confidence 9999999999999999999999999999999999999999999999999999999995 44333322221 566666654
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.96 E-value=4.9e-33 Score=237.06 Aligned_cols=399 Identities=28% Similarity=0.363 Sum_probs=256.1
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
..+++++|.+..+..+ +.++..+.+|.+++|.+.++|++++.+..++.++.++|.+..+|+.+..+..|..++.+.|.+
T Consensus 48 ~~lils~N~l~~l~~d-l~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~ 126 (565)
T KOG0472|consen 48 QKLILSHNDLEVLRED-LKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNEL 126 (565)
T ss_pred hhhhhccCchhhccHh-hhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccce
Confidence 3455666666655555 666666666666666666666666666666666666666666666665566666666666666
Q ss_pred ccCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCC
Q 014560 82 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 160 (422)
Q Consensus 82 ~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 160 (422)
.+++++++.+..|+.++..+|++..+|++..... +..+++.+|++...|...-.++.|++++...|-+..+|.++..-.
T Consensus 127 ~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~tlP~~lg~l~ 206 (565)
T KOG0472|consen 127 KELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLETLPPELGGLE 206 (565)
T ss_pred eecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhhcCChhhcchh
Confidence 6665556655566666655565555555544443 555555555555554444445555555555555555444433222
Q ss_pred ChHHHHHHHccCCCCc-ccc---------ccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCc
Q 014560 161 TPALLKYLRSRLPENE-DSE---------ASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 230 (422)
Q Consensus 161 ~~~~l~~~~~~~~~~~-~~~---------~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 230 (422)
....+..-.+++..+- +.+ +.......-..-...-..+..+++.+|.+..+|..+..+++|+.|++++|.
T Consensus 207 ~L~~LyL~~Nki~~lPef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~ 286 (565)
T KOG0472|consen 207 SLELLYLRRNKIRFLPEFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNND 286 (565)
T ss_pred hhHHHHhhhcccccCCCCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCc
Confidence 2222211122221111 000 011111111111223356788999999999999999989999999999999
Q ss_pred cccCCccccCCCCCcEEEecCCcCCCCChHH--------------------------------------H---hcCCCCC
Q 014560 231 IQELPPELSSCASLQTLILSRNKIKDWPDAI--------------------------------------L---TSLSSLS 269 (422)
Q Consensus 231 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------------------------------~---~~~~~L~ 269 (422)
++.+|..++++ .|+.+-+.||.+..+.... + ....+.+
T Consensus 287 is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tk 365 (565)
T KOG0472|consen 287 ISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTK 365 (565)
T ss_pred cccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhh
Confidence 99999989988 8999998888654221111 1 1123455
Q ss_pred EEECCCCCCCcCCCCCCCCCC--CccEEEccCCcCCC-----------------------CCCCCCCCCccCceEEeCCC
Q 014560 270 CLKLDNNPLRQVPSDGFKDIP--MLQILDLSYNIASL-----------------------PENPPFSSLPHLQELYLRRM 324 (422)
Q Consensus 270 ~L~l~~~~~~~~~~~~~~~~~--~L~~l~l~~~~~~~-----------------------~~~~~~~~~~~L~~L~l~~~ 324 (422)
.|++++-+++.+|.+.|..-. -...+++++|.+.. ..+..+..+++|..|++++|
T Consensus 366 iL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN 445 (565)
T KOG0472|consen 366 ILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNN 445 (565)
T ss_pred hhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccc
Confidence 666666666666665554222 35566777664332 22334566889999999999
Q ss_pred cCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCc-cccCCccccEEEccCCCCCccchHH
Q 014560 325 QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPE-LGLLEPSLQALRLDGNPLRSIRRTI 403 (422)
Q Consensus 325 ~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~~~~~L~~l~l~~n~~~~i~~~~ 403 (422)
-+..+|..+++...|+.++++.|.++.+|++......++.+-.++|++++++.+ +..+ ..|..||+.+|.+..||+..
T Consensus 446 ~Ln~LP~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm-~nL~tLDL~nNdlq~IPp~L 524 (565)
T KOG0472|consen 446 LLNDLPEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGLKNM-RNLTTLDLQNNDLQQIPPIL 524 (565)
T ss_pred hhhhcchhhhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHhhhh-hhcceeccCCCchhhCChhh
Confidence 999999999999999999999999999999988888888888888999988887 5555 99999999999999888864
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.96 E-value=4.4e-31 Score=246.91 Aligned_cols=388 Identities=27% Similarity=0.316 Sum_probs=251.1
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
|++||||+|++...|.. +..+.+|+.|.++.|.+..+|.+..++.+|+++.|.+|.+..+|..+..+++|+.|+++.|.
T Consensus 47 L~~l~lsnn~~~~fp~~-it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~ 125 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQ-ITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNH 125 (1081)
T ss_pred eEEeeccccccccCCch-hhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhc
Confidence 57889999988888877 77888888888888888888888888888888888888888888888888888888888887
Q ss_pred CccCchhhhCCCCCcE-----------------------------------------EEccCCcccccccccccceecEE
Q 014560 81 LSALPAELGKLSKLGT-----------------------------------------LDLHSNQLKEYCVEACQLRLSVL 119 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~-----------------------------------------L~l~~~~~~~l~~~~~~~~L~~L 119 (422)
+..+|..+..++.++. +++++|.+...... ....|+.+
T Consensus 126 f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls-~~~~l~~l 204 (1081)
T KOG0618|consen 126 FGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLS-NLANLEVL 204 (1081)
T ss_pred cCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhh-hccchhhh
Confidence 7766665544332222 33333332200000 00001111
Q ss_pred EcCCCCCCC----------CC---------ccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccc
Q 014560 120 DLSNNSLSG----------LP---------PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 180 (422)
Q Consensus 120 ~l~~~~~~~----------~~---------~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (422)
....|+++. +- .....-.+|++++++.|.+..++.-+......+.+..
T Consensus 205 ~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~------------- 271 (1081)
T KOG0618|consen 205 HCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNA------------- 271 (1081)
T ss_pred hhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEecc-------------
Confidence 111111111 00 0112235666677776666555422221111000000
Q ss_pred cchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcccc-CCC-CCcEEEecCCcCCCCC
Q 014560 181 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELS-SCA-SLQTLILSRNKIKDWP 258 (422)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~-~~~-~L~~L~l~~~~~~~~~ 258 (422)
.......+.........++.+.+..|.+..+|....+.+.|++|++..|.+..+|+.+- -.. .++.+..+.+.+...+
T Consensus 272 n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp 351 (1081)
T KOG0618|consen 272 NHNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLP 351 (1081)
T ss_pred cchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccc
Confidence 00000111111112245566666666666777666666777777777777776666432 111 2455555555555544
Q ss_pred hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCC
Q 014560 259 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 338 (422)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~ 338 (422)
...-...+.|+.|++.+|.++.--.-.+.+.+.|+.|++++|.+.......+.+++.|+.|+++||+++.+|+.+.+|+.
T Consensus 352 ~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~ 431 (1081)
T KOG0618|consen 352 SYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGR 431 (1081)
T ss_pred cccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhh
Confidence 32223456788888888888764333477888999999999999888888889999999999999999999999999999
Q ss_pred CcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc--ccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 339 LRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 339 L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
|++|...+|.+..+| .+.+++.|+.+|++.|.++ .++..... +.|++||+++|.-...+.+.|..
T Consensus 432 L~tL~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~--p~LkyLdlSGN~~l~~d~~~l~~ 498 (1081)
T KOG0618|consen 432 LHTLRAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS--PNLKYLDLSGNTRLVFDHKTLKV 498 (1081)
T ss_pred hHHHhhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCC--cccceeeccCCcccccchhhhHH
Confidence 999999999999999 5778899999999999887 44443332 79999999999865555555544
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.94 E-value=8.5e-30 Score=238.39 Aligned_cols=391 Identities=30% Similarity=0.356 Sum_probs=252.7
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
.+|++++|.+-..|-.+.++.-+|+.|++++|.+..+|..+..+.+|+.|+++.|.+...|....++.+|++++|.+|..
T Consensus 24 ~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n~l 103 (1081)
T KOG0618|consen 24 QILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNNRL 103 (1081)
T ss_pred HhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccchh
Confidence 34555666555544444555556777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCC-------------------CCCC-CCccccccCCcc
Q 014560 82 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNN-------------------SLSG-LPPEIGKMTTLR 140 (422)
Q Consensus 82 ~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~-------------------~~~~-~~~~~~~l~~L~ 140 (422)
..+|.++..+.+|+.|++++|.+..+|..+.... ++++..++| .+.. ++.++..++.
T Consensus 104 ~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 104 QSLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH-- 181 (1081)
T ss_pred hcCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--
Confidence 7777777777777777777777766655544433 344444443 2211 2222222222
Q ss_pred EEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhh------HHHhhhccccccceeeccCCCCCCCCcc
Q 014560 141 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKED------LITMATRLSVTSKELSLEGMNLSAIPSE 214 (422)
Q Consensus 141 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~l~~l~l~~~~~~~~~~~ 214 (422)
.+++.+|.+... ........+.+..-.+.+......+..-.... ........+.+++.++++.+.+..+|.|
T Consensus 182 ~ldLr~N~~~~~--dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~w 259 (1081)
T KOG0618|consen 182 QLDLRYNEMEVL--DLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEW 259 (1081)
T ss_pred eeecccchhhhh--hhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHH
Confidence 355555555411 11111111111111111111111111000000 0111122345778888888888888888
Q ss_pred cccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCC----------
Q 014560 215 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD---------- 284 (422)
Q Consensus 215 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---------- 284 (422)
+..+.+|+.+....|.+..+|......++|+.+.+..|.+.-+++. ......|++|++..|.+..+++.
T Consensus 260 i~~~~nle~l~~n~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~-le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~ 338 (1081)
T KOG0618|consen 260 IGACANLEALNANHNRLVALPLRISRITSLVSLSAAYNELEYIPPF-LEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLN 338 (1081)
T ss_pred HHhcccceEecccchhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCc-ccccceeeeeeehhccccccchHHHhhhhHHHH
Confidence 8888888888888877766554444445555555555554444433 13345555555555544433332
Q ss_pred ---------------CCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCC
Q 014560 285 ---------------GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNS 348 (422)
Q Consensus 285 ---------------~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~ 348 (422)
.=...+.|+.|.+.+|.+++.....+.++++|+.|++++|.+..+|+. +.+++.|++|+++||+
T Consensus 339 ~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNk 418 (1081)
T KOG0618|consen 339 TLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNK 418 (1081)
T ss_pred HHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccch
Confidence 112345677788888999888778889999999999999999999877 6689999999999999
Q ss_pred CcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCcc
Q 014560 349 LQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 349 l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
++.+|.....+..|+.|...+|++..+| ++... +.|+++|++.|.+..+
T Consensus 419 L~~Lp~tva~~~~L~tL~ahsN~l~~fP-e~~~l-~qL~~lDlS~N~L~~~ 467 (1081)
T KOG0618|consen 419 LTTLPDTVANLGRLHTLRAHSNQLLSFP-ELAQL-PQLKVLDLSCNNLSEV 467 (1081)
T ss_pred hhhhhHHHHhhhhhHHHhhcCCceeech-hhhhc-CcceEEecccchhhhh
Confidence 9999999999999999999999999999 66666 9999999999998654
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=3.2e-24 Score=221.68 Aligned_cols=335 Identities=23% Similarity=0.276 Sum_probs=213.1
Q ss_pred ecChhHHhhcccccceecccccc-------cCCchhhhcc-ccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccC
Q 014560 13 VLSNNLIASWTMLTELIASKNLL-------NGMPETIGSL-SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 84 (422)
Q Consensus 13 ~i~~~~~~~~~~L~~L~l~~~~i-------~~~~~~~~~~-~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l 84 (422)
.+...+|.++++|+.|.++++.. ..+|..+..+ .+|+.|.+.++.+..+|..| ...+|++|++.++.+..+
T Consensus 548 ~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L 626 (1153)
T PLN03210 548 HIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKL 626 (1153)
T ss_pred eecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccc
Confidence 57778899999999999976643 1356666665 46999999999999999887 578999999999999999
Q ss_pred chhhhCCCCCcEEEccCCc-ccccccccccceecEEEcCCCC-CCCCCccccccCCccEEEcCCCc-cccccccccCCCC
Q 014560 85 PAELGKLSKLGTLDLHSNQ-LKEYCVEACQLRLSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPT 161 (422)
Q Consensus 85 ~~~l~~~~~L~~L~l~~~~-~~~l~~~~~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~ 161 (422)
|..+..+++|+.|+++++. +..+|.......|+.|++++|. +..+|..+..+++|+.|++++|. +..++....
T Consensus 627 ~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~---- 702 (1153)
T PLN03210 627 WDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGIN---- 702 (1153)
T ss_pred ccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCC----
Confidence 9989999999999999764 5667654444459999999985 55689999999999999999873 444432210
Q ss_pred hHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcccccCCCccEEeCCCCccccCCccccC
Q 014560 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSS 240 (422)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 240 (422)
..+++.+.+.+|... .+|. ...+|++|+++++.+..+|..+ .
T Consensus 703 ---------------------------------l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~~lP~~~-~ 745 (1153)
T PLN03210 703 ---------------------------------LKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIEEFPSNL-R 745 (1153)
T ss_pred ---------------------------------CCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccccccccc-c
Confidence 134555666555322 2221 1245666666666666665443 3
Q ss_pred CCCCcEEEecCCcCC-------CCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCC
Q 014560 241 CASLQTLILSRNKIK-------DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 313 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~-------~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 313 (422)
+++|+.|.+.++... ...+..+..+++|+.|++++|......+..+.++++|+.|++++|..-...+... .+
T Consensus 746 l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L 824 (1153)
T PLN03210 746 LENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NL 824 (1153)
T ss_pred ccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Cc
Confidence 455555555543211 1111122234566666666654332222335566666666666553222222222 45
Q ss_pred ccCceEEeCCC-cCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCC-CCcccCCccccCCccccEEEc
Q 014560 314 PHLQELYLRRM-QLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN-NISALPPELGLLEPSLQALRL 391 (422)
Q Consensus 314 ~~L~~L~l~~~-~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~l~l 391 (422)
++|+.|++++| .+..+|.. .++|+.|++++|.++.+|..+..+++|+.|++++| +++.++.....+ ++|+.+++
T Consensus 825 ~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L-~~L~~L~l 900 (1153)
T PLN03210 825 ESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKL-KHLETVDF 900 (1153)
T ss_pred cccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccc-cCCCeeec
Confidence 56666666665 33333322 24566666666666666666666666666666664 455665555555 56666666
Q ss_pred cCC
Q 014560 392 DGN 394 (422)
Q Consensus 392 ~~n 394 (422)
++|
T Consensus 901 ~~C 903 (1153)
T PLN03210 901 SDC 903 (1153)
T ss_pred CCC
Confidence 665
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.89 E-value=1.9e-21 Score=201.22 Aligned_cols=312 Identities=24% Similarity=0.313 Sum_probs=241.8
Q ss_pred cChhHHhhc-ccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc-CccCchhhhCC
Q 014560 14 LSNNLIASW-TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA-LSALPAELGKL 91 (422)
Q Consensus 14 i~~~~~~~~-~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-i~~l~~~l~~~ 91 (422)
++.. |..+ .+|+.|++.++.++.+|..+ ...+|+.|+++++.+..++..+..+++|+.++++++. +..+|. +..+
T Consensus 580 lp~~-~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l 656 (1153)
T PLN03210 580 LPEG-FDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMA 656 (1153)
T ss_pred cCcc-hhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccC
Confidence 4444 6665 46999999999999999777 5689999999999999999989999999999999864 667774 8889
Q ss_pred CCCcEEEccCCc-ccccccccccce-ecEEEcCCCC-CCCCCccccccCCccEEEcCCCccc-cccccccCCCChHHHHH
Q 014560 92 SKLGTLDLHSNQ-LKEYCVEACQLR-LSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKY 167 (422)
Q Consensus 92 ~~L~~L~l~~~~-~~~l~~~~~~~~-L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~ 167 (422)
++|+.|++++|. +..+|..+...+ |+.|++++|. +..+|..+ .+++|+.|++++|... .++
T Consensus 657 ~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p-------------- 721 (1153)
T PLN03210 657 TNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFP-------------- 721 (1153)
T ss_pred CcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccc--------------
Confidence 999999999875 567787766665 9999999974 56677655 7899999999988532 111
Q ss_pred HHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCC-------c-ccc
Q 014560 168 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-------P-ELS 239 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-------~-~~~ 239 (422)
....+++.++++++.+..+|..+ .+++|++|.+.++....++ + .+.
T Consensus 722 -------------------------~~~~nL~~L~L~~n~i~~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~ 775 (1153)
T PLN03210 722 -------------------------DISTNISWLDLDETAIEEFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTM 775 (1153)
T ss_pred -------------------------cccCCcCeeecCCCccccccccc-cccccccccccccchhhccccccccchhhhh
Confidence 01246788889988888887654 5678888888775432221 1 123
Q ss_pred CCCCCcEEEecCCcC-CCCChHHHhcCCCCCEEECCCCC-CCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCc
Q 014560 240 SCASLQTLILSRNKI-KDWPDAILTSLSSLSCLKLDNNP-LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 317 (422)
Q Consensus 240 ~~~~L~~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 317 (422)
.+++|+.|++++|.. ..+|. .+..+++|+.|++++|. +..+|.. . .+++|+.|++++|......+ ....+|+
T Consensus 776 ~~~sL~~L~Ls~n~~l~~lP~-si~~L~~L~~L~Ls~C~~L~~LP~~-~-~L~sL~~L~Ls~c~~L~~~p---~~~~nL~ 849 (1153)
T PLN03210 776 LSPSLTRLFLSDIPSLVELPS-SIQNLHKLEHLEIENCINLETLPTG-I-NLESLESLDLSGCSRLRTFP---DISTNIS 849 (1153)
T ss_pred ccccchheeCCCCCCccccCh-hhhCCCCCCEEECCCCCCcCeeCCC-C-CccccCEEECCCCCcccccc---ccccccC
Confidence 457899999999854 44554 47899999999999874 5556554 2 68999999999985433222 2236899
Q ss_pred eEEeCCCcCccCCcccccCCCCcEEECCCC-CCcccCccCcCCCCCCEEeCCCCC-Cccc
Q 014560 318 ELYLRRMQLREAPTDILRLQQLRILDLSQN-SLQSIPEGFKNLTSLTELDLSDNN-ISAL 375 (422)
Q Consensus 318 ~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n-~l~~l~~~~~~~~~L~~L~l~~n~-l~~~ 375 (422)
.|++++|.++.+|..+..+++|+.|++++| +++.+|.....+++|+.+++++|. ++.+
T Consensus 850 ~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~ 909 (1153)
T PLN03210 850 DLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEA 909 (1153)
T ss_pred EeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccc
Confidence 999999999999999999999999999996 778888888889999999999993 6543
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=5e-22 Score=191.54 Aligned_cols=257 Identities=23% Similarity=0.254 Sum_probs=143.1
Q ss_pred cccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCc
Q 014560 24 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 103 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~ 103 (422)
.-..|+++++.++.+|..+. .+|+.|++++|.++.+|.. .++|++|++++|.++.+|.. .++|+.|++++|.
T Consensus 202 ~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls~N~ 273 (788)
T PRK15387 202 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLELSIFSNP 273 (788)
T ss_pred CCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccceeeccCCc
Confidence 34566777777777766554 3677777777777776643 46677777777777766642 3567777777777
Q ss_pred ccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccch
Q 014560 104 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 183 (422)
Q Consensus 104 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (422)
+..++... ..|+.|++++|+++.+|.. .++|+.|++++|.++.++..
T Consensus 274 L~~Lp~lp--~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~Lp~l---------------------------- 320 (788)
T PRK15387 274 LTHLPALP--SGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPAL---------------------------- 320 (788)
T ss_pred hhhhhhch--hhcCEEECcCCcccccccc---ccccceeECCCCccccCCCC----------------------------
Confidence 76665422 2366777777777666542 35677777777766544210
Q ss_pred hhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh
Q 014560 184 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 263 (422)
Q Consensus 184 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (422)
+..++.+.+.+|.+..+|.. ..+|+.|++++|.++.+|.. ..+|+.|++++|.+..++..
T Consensus 321 -----------p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l--- 380 (788)
T PRK15387 321 -----------PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL--- 380 (788)
T ss_pred -----------cccccccccccCcccccccc---ccccceEecCCCccCCCCCC---CcccceehhhccccccCccc---
Confidence 01334444555555544431 13556666666666555532 23455556666555554431
Q ss_pred cCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEE
Q 014560 264 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 343 (422)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~ 343 (422)
..+|+.|++++|.+..++.. .++|+.|++++|.+..+.. ...+|+.|++++|.++.+|..+.++++|+.++
T Consensus 381 -~~~L~~LdLs~N~Lt~LP~l----~s~L~~LdLS~N~LssIP~----l~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~Ld 451 (788)
T PRK15387 381 -PSGLKELIVSGNRLTSLPVL----PSELKELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVN 451 (788)
T ss_pred -ccccceEEecCCcccCCCCc----ccCCCEEEccCCcCCCCCc----chhhhhhhhhccCcccccChHHhhccCCCeEE
Confidence 23455666665555544431 2345555555555543221 11244455555555555555555555555555
Q ss_pred CCCCCCc
Q 014560 344 LSQNSLQ 350 (422)
Q Consensus 344 l~~n~l~ 350 (422)
+++|.++
T Consensus 452 Ls~N~Ls 458 (788)
T PRK15387 452 LEGNPLS 458 (788)
T ss_pred CCCCCCC
Confidence 5555554
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.89 E-value=7.6e-22 Score=190.30 Aligned_cols=258 Identities=28% Similarity=0.324 Sum_probs=146.7
Q ss_pred ccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCC
Q 014560 46 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 125 (422)
Q Consensus 46 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 125 (422)
..-..|+++++.++.+|+.+. ++|+.|++.+|.++.+|.. .++|++|++++|+++.+|.. ...|+.|++++|.
T Consensus 201 ~~~~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l--p~sL~~L~Ls~N~ 273 (788)
T PRK15387 201 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL--PPGLLELSIFSNP 273 (788)
T ss_pred CCCcEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc--ccccceeeccCCc
Confidence 456788898888888887664 4788899999888888753 57888888888888877643 2357888888887
Q ss_pred CCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccC
Q 014560 126 LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEG 205 (422)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 205 (422)
++.+|... .+|+.|++++|.++.++.. ...++.|++++
T Consensus 274 L~~Lp~lp---~~L~~L~Ls~N~Lt~LP~~---------------------------------------p~~L~~LdLS~ 311 (788)
T PRK15387 274 LTHLPALP---SGLCKLWIFGNQLTSLPVL---------------------------------------PPGLQELSVSD 311 (788)
T ss_pred hhhhhhch---hhcCEEECcCCcccccccc---------------------------------------ccccceeECCC
Confidence 77665532 5677777777776544310 12455555555
Q ss_pred CCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCC
Q 014560 206 MNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDG 285 (422)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 285 (422)
|.+..+|.. ..+|+.|.+++|.++.+|.. ..+|+.|++++|.+..++.. .++|+.|++++|.+..++..
T Consensus 312 N~L~~Lp~l---p~~L~~L~Ls~N~L~~LP~l---p~~Lq~LdLS~N~Ls~LP~l----p~~L~~L~Ls~N~L~~LP~l- 380 (788)
T PRK15387 312 NQLASLPAL---PSELCKLWAYNNQLTSLPTL---PSGLQELSVSDNQLASLPTL----PSELYKLWAYNNRLTSLPAL- 380 (788)
T ss_pred CccccCCCC---cccccccccccCcccccccc---ccccceEecCCCccCCCCCC----CcccceehhhccccccCccc-
Confidence 555554431 22455555555555554431 13455555555555554431 23455555555555544321
Q ss_pred CCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEE
Q 014560 286 FKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTEL 365 (422)
Q Consensus 286 ~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L 365 (422)
..+|+.|++++|.+..... ..++|+.|++++|.++.+|.. ..+|+.|++++|.++.+|..+.++++|+.|
T Consensus 381 ---~~~L~~LdLs~N~Lt~LP~----l~s~L~~LdLS~N~LssIP~l---~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~L 450 (788)
T PRK15387 381 ---PSGLKELIVSGNRLTSLPV----LPSELKELMVSGNRLTSLPML---PSGLLSLSVYRNQLTRLPESLIHLSSETTV 450 (788)
T ss_pred ---ccccceEEecCCcccCCCC----cccCCCEEEccCCcCCCCCcc---hhhhhhhhhccCcccccChHHhhccCCCeE
Confidence 1345555555554443221 113455555555555544432 123444555555555555555555555555
Q ss_pred eCCCCCCc
Q 014560 366 DLSDNNIS 373 (422)
Q Consensus 366 ~l~~n~l~ 373 (422)
++++|.++
T Consensus 451 dLs~N~Ls 458 (788)
T PRK15387 451 NLEGNPLS 458 (788)
T ss_pred ECCCCCCC
Confidence 55555544
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.86 E-value=1e-23 Score=180.03 Aligned_cols=368 Identities=25% Similarity=0.352 Sum_probs=223.1
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccC-CccccCC-CCCccCCCCCEEEcCCC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQ-NRILSIP-SSISGCCSLAEFYMGNN 79 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~-~~~~~l~-~~~~~~~~L~~L~l~~~ 79 (422)
+++|..|+|+.||..+|+.+++||.|+|++|.|..+ |.+|.++..|..|-+.+ |.|+.+| ..|.++..|+.|.+.-+
T Consensus 71 eirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan 150 (498)
T KOG4237|consen 71 EIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNAN 150 (498)
T ss_pred EEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChh
Confidence 456666667777777777777777777777777665 56666666666666655 5666664 34666666666666666
Q ss_pred cCccC-chhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccc--------
Q 014560 80 ALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR-------- 150 (422)
Q Consensus 80 ~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-------- 150 (422)
.+..+ .+.|..+++|..|.+.+|.+..++... +..+.+++.+.+..|++.
T Consensus 151 ~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~t---------------------f~~l~~i~tlhlA~np~icdCnL~wl 209 (498)
T KOG4237|consen 151 HINCIRQDALRDLPSLSLLSLYDNKIQSICKGT---------------------FQGLAAIKTLHLAQNPFICDCNLPWL 209 (498)
T ss_pred hhcchhHHHHHHhhhcchhcccchhhhhhcccc---------------------ccchhccchHhhhcCccccccccchh
Confidence 66644 344666666666666666666555432 333333333333333311
Q ss_pred -------cccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcc-cccCCCcc
Q 014560 151 -------TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE-IWEAGEIT 222 (422)
Q Consensus 151 -------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~-~~~~~~L~ 222 (422)
.+....+....+..+.+............+. .+. -...+.-.+......|.. +..+++|+
T Consensus 210 a~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~--~es----------l~s~~~~~d~~d~~cP~~cf~~L~~L~ 277 (498)
T KOG4237|consen 210 ADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCS--LES----------LPSRLSSEDFPDSICPAKCFKKLPNLR 277 (498)
T ss_pred hhHHhhchhhcccceecchHHHHHHHhcccchhhhhhh--HHh----------HHHhhccccCcCCcChHHHHhhcccce
Confidence 0111112222333332222111110000000 000 001111111122223332 44579999
Q ss_pred EEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 223 KLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 223 ~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+|++++|.++.+.+ +|.+...+++|.+..|.+..+...+|.++..|+.|++++|+++.+.+.+|....+|..+.+-+|.
T Consensus 278 ~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 278 KLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred EeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 99999999998654 59999999999999999999999999999999999999999999999999999999999998764
Q ss_pred CCCC-------------CCCCC---CCCccCceEEeCCCcCccC----Cc---------ccccCCCCc-EEECCCCCCcc
Q 014560 302 ASLP-------------ENPPF---SSLPHLQELYLRRMQLREA----PT---------DILRLQQLR-ILDLSQNSLQS 351 (422)
Q Consensus 302 ~~~~-------------~~~~~---~~~~~L~~L~l~~~~i~~l----~~---------~~~~~~~L~-~l~l~~n~l~~ 351 (422)
+... ....- +.-..++.+.++...+... |+ +-..|+.+. .+..++..++.
T Consensus 358 ~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~ 437 (498)
T KOG4237|consen 358 FNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKL 437 (498)
T ss_pred ccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhh
Confidence 4310 00001 1112456666666544311 11 112234443 23344445666
Q ss_pred cCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhhhHH
Q 014560 352 IPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTK 409 (422)
Q Consensus 352 l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~~~~ 409 (422)
+|..+. ..-..+.+.+|.++.+|.+. . .++ .+++++|++..+..+.|++-+.
T Consensus 438 lp~~iP--~d~telyl~gn~~~~vp~~~--~-~~l-~~dls~n~i~~Lsn~tf~n~tq 489 (498)
T KOG4237|consen 438 LPRGIP--VDVTELYLDGNAITSVPDEL--L-RSL-LLDLSNNRISSLSNYTFSNMTQ 489 (498)
T ss_pred cCCCCC--chhHHHhcccchhcccCHHH--H-hhh-hcccccCceehhhcccccchhh
Confidence 666553 24567889999999999883 3 677 9999999999888888877544
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.83 E-value=1.2e-22 Score=173.52 Aligned_cols=166 Identities=23% Similarity=0.232 Sum_probs=126.8
Q ss_pred ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCc
Q 014560 238 LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 317 (422)
Q Consensus 238 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 317 (422)
|.++++|+++++++|.++.+.+.+|.+...+++|.+..|++..+....|..+..|+.|++++|.++...+..|.....|.
T Consensus 270 f~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~ 349 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS 349 (498)
T ss_pred HhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence 78999999999999999999999999999999999999999988888899999999999999999999998999999999
Q ss_pred eEEeCCCcCc------cCCcc-----------cccCCCCcEEECCCCCCcc-------------cCccCcCCCCCCEEeC
Q 014560 318 ELYLRRMQLR------EAPTD-----------ILRLQQLRILDLSQNSLQS-------------IPEGFKNLTSLTELDL 367 (422)
Q Consensus 318 ~L~l~~~~i~------~l~~~-----------~~~~~~L~~l~l~~n~l~~-------------l~~~~~~~~~L~~L~l 367 (422)
+|++-+|.+. -+.++ -.....++.+.+++..+.. -+.+=..|+-+.++.=
T Consensus 350 ~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvR 429 (498)
T KOG4237|consen 350 TLNLLSNPFNCNCRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVR 429 (498)
T ss_pred eeehccCcccCccchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHh
Confidence 9999887532 11111 1122356666666654331 1222344555655443
Q ss_pred -CCCCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 368 -SDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 368 -~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
++..++.+|..+.. ...++++.+|.++.++.+.+..
T Consensus 430 cSnk~lk~lp~~iP~---d~telyl~gn~~~~vp~~~~~~ 466 (498)
T KOG4237|consen 430 CSNKLLKLLPRGIPV---DVTELYLDGNAITSVPDELLRS 466 (498)
T ss_pred hcccchhhcCCCCCc---hhHHHhcccchhcccCHHHHhh
Confidence 34457788877653 5789999999999999885544
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=6.4e-20 Score=178.16 Aligned_cols=247 Identities=25% Similarity=0.370 Sum_probs=160.1
Q ss_pred cccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCc
Q 014560 24 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 103 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~ 103 (422)
+...|+++++.++.+|..+. .+|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|.
T Consensus 179 ~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~ 252 (754)
T PRK15370 179 NKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINR 252 (754)
T ss_pred CceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCc
Confidence 45667777777776665443 367777777777777765543 467777777777777766543 367777777777
Q ss_pred ccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccch
Q 014560 104 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 183 (422)
Q Consensus 104 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (422)
+..+|.... ..|+.|++++|++..+|..+. ++|+.|++++|.++.++...
T Consensus 253 L~~LP~~l~-s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l--------------------------- 302 (754)
T PRK15370 253 ITELPERLP-SALQSLDLFHNKISCLPENLP--EELRYLSVYDNSIRTLPAHL--------------------------- 302 (754)
T ss_pred cCcCChhHh-CCCCEEECcCCccCccccccC--CCCcEEECCCCccccCcccc---------------------------
Confidence 776665442 247777777777776665543 46777777777765543211
Q ss_pred hhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh
Q 014560 184 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 263 (422)
Q Consensus 184 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (422)
+..++.+++.+|.+..+|..+. ++|+.|++++|.++.+|..+. ++|+.|++++|.+..++...
T Consensus 303 -----------p~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l-- 365 (754)
T PRK15370 303 -----------PSGITHLNVQSNSLTALPETLP--PGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL-- 365 (754)
T ss_pred -----------hhhHHHHHhcCCccccCCcccc--ccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh--
Confidence 1234556666666666554332 577788888887777776543 57888888888777665432
Q ss_pred cCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCC---CCCCCCccCceEEeCCCcCc
Q 014560 264 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLRRMQLR 327 (422)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~i~ 327 (422)
.++|+.|++++|.+..+|.. +. +.|+.|++++|.+..... .....++++..+++.+|.+.
T Consensus 366 -p~~L~~LdLs~N~Lt~LP~~-l~--~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 366 -PPTITTLDVSRNALTNLPEN-LP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred -cCCcCEEECCCCcCCCCCHh-HH--HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence 25788888888877776654 22 367778888887764321 12234467778888888766
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.82 E-value=1.3e-19 Score=176.08 Aligned_cols=100 Identities=27% Similarity=0.353 Sum_probs=65.5
Q ss_pred ccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCC
Q 014560 46 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNS 125 (422)
Q Consensus 46 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~ 125 (422)
.+...|+++++.++.+|..+ .+.|+.|++++|.++.+|..+. ++|+.|++++|.++.+|.... ..|+.|++++|.
T Consensus 178 ~~~~~L~L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~-~~L~~L~Ls~N~ 252 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACI--PEQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP-DTIQEMELSINR 252 (754)
T ss_pred cCceEEEeCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh-ccccEEECcCCc
Confidence 35667777777777776654 2467777777777777776543 477777777777776665432 247777777777
Q ss_pred CCCCCccccccCCccEEEcCCCccccc
Q 014560 126 LSGLPPEIGKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 126 ~~~~~~~~~~l~~L~~L~l~~~~~~~~ 152 (422)
+..+|..+. .+|+.|++++|.+..+
T Consensus 253 L~~LP~~l~--s~L~~L~Ls~N~L~~L 277 (754)
T PRK15370 253 ITELPERLP--SALQSLDLFHNKISCL 277 (754)
T ss_pred cCcCChhHh--CCCCEEECcCCccCcc
Confidence 666665443 4666676666665443
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.74 E-value=7.1e-20 Score=139.07 Aligned_cols=202 Identities=33% Similarity=0.563 Sum_probs=174.3
Q ss_pred ccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCcc
Q 014560 214 EIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ 293 (422)
Q Consensus 214 ~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 293 (422)
.++.+..++.|.++.|+++.+|+.++.+.+|+.+++.+|++.+++.. ++.+++|+.|++.-|++...| .+|+.+|.|+
T Consensus 28 gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~-issl~klr~lnvgmnrl~~lp-rgfgs~p~le 105 (264)
T KOG0617|consen 28 GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTS-ISSLPKLRILNVGMNRLNILP-RGFGSFPALE 105 (264)
T ss_pred cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChh-hhhchhhhheecchhhhhcCc-cccCCCchhh
Confidence 46677889999999999999999999999999999999999999887 489999999999988876555 5599999999
Q ss_pred EEEccCCcCCC-CCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCC
Q 014560 294 ILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNI 372 (422)
Q Consensus 294 ~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l 372 (422)
.|++..|.+.. ..+..|-.+..|+.|++++|.+..+|..++++++|+.|.+.+|.+-++|..++.++.|+.|.+.+|++
T Consensus 106 vldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 106 VLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence 99999987764 45566777899999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCccccCC--ccccEEEccCCCCCccchHHHhhhHHHHHHHHHh
Q 014560 373 SALPPELGLLE--PSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 417 (422)
Q Consensus 373 ~~~~~~~~~~~--~~L~~l~l~~n~~~~i~~~~~~~~~~~~~~~~~~ 417 (422)
+.+|.++...- .+-+++.+.+|++..-=++-|.-|...+++|+|.
T Consensus 186 ~vlppel~~l~l~~~k~v~r~E~NPwv~pIaeQf~lG~shV~~yirt 232 (264)
T KOG0617|consen 186 TVLPPELANLDLVGNKQVMRMEENPWVNPIAEQFLLGISHVIDYIRT 232 (264)
T ss_pred eecChhhhhhhhhhhHHHHhhhhCCCCChHHHHHHhhHHHHHHHHhh
Confidence 99998876541 2335667888887655555566688888888875
No 20
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.71 E-value=2.5e-19 Score=136.14 Aligned_cols=155 Identities=33% Similarity=0.473 Sum_probs=143.9
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
+.|-+|+|+++.++.. ++++.+|++|++.+|+++.+|.+++.+++|+.|+++-|.+..+|..|+.++.|+.|++..|.+
T Consensus 36 TrLtLSHNKl~~vppn-ia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl 114 (264)
T KOG0617|consen 36 TRLTLSHNKLTVVPPN-IAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNL 114 (264)
T ss_pred hhhhcccCceeecCCc-HHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhcccccc
Confidence 5678999999999988 999999999999999999999999999999999999999999999999999999999999988
Q ss_pred c--cCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCcccccccccc
Q 014560 82 S--ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLV 157 (422)
Q Consensus 82 ~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (422)
. .+|..|..++.|+.|++++|.++.+|+.....+ |+.|.+.+|.+-.+|.+++.++.|++|.+.+|.++-++....
T Consensus 115 ~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vlppel~ 193 (264)
T KOG0617|consen 115 NENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVLPPELA 193 (264)
T ss_pred ccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeecChhhh
Confidence 7 689999999999999999999999999998887 999999999999999999999999999999999887665443
No 21
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.66 E-value=1e-17 Score=151.33 Aligned_cols=104 Identities=24% Similarity=0.289 Sum_probs=70.2
Q ss_pred ceeeccCCccee-cChhHHhhcccccceecccccccC-----CchhhhccccCCeEeccCCcccc-------CCCCCccC
Q 014560 2 SKLDVEGNKLTV-LSNNLIASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-------IPSSISGC 68 (422)
Q Consensus 2 ~~L~ls~~~i~~-i~~~~~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~~~~-------l~~~~~~~ 68 (422)
+.|+|+++.++. --...|..+..|+.|+++++.++. ++..+...++|++++++++.+.. ++..+..+
T Consensus 1 ~~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~ 80 (319)
T cd00116 1 LQLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKG 80 (319)
T ss_pred CccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhc
Confidence 367888888872 223347788889999999998842 45556677889999998876552 12345567
Q ss_pred CCCCEEEcCCCcCc-cCchhhhCCC---CCcEEEccCCccc
Q 014560 69 CSLAEFYMGNNALS-ALPAELGKLS---KLGTLDLHSNQLK 105 (422)
Q Consensus 69 ~~L~~L~l~~~~i~-~l~~~l~~~~---~L~~L~l~~~~~~ 105 (422)
++|+.|++++|.+. ..+..+..+. +|++|++++|.+.
T Consensus 81 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~ 121 (319)
T cd00116 81 CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLG 121 (319)
T ss_pred CceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccc
Confidence 77888888777765 3334444333 3777777777655
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.61 E-value=5.1e-17 Score=146.83 Aligned_cols=60 Identities=28% Similarity=0.305 Sum_probs=34.1
Q ss_pred CCCcEEECCCCCCc-----ccCccCcCCCCCCEEeCCCCCCccc----CCccccCC-ccccEEEccCCCC
Q 014560 337 QQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISAL----PPELGLLE-PSLQALRLDGNPL 396 (422)
Q Consensus 337 ~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~~-~~L~~l~l~~n~~ 396 (422)
+.|+.+++++|.++ .++..+..+++|+.+++++|.++.- ...+.... +.++.+++.+|++
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCCC
Confidence 56677777777664 2334455556777777777776522 11122221 4677777776653
No 23
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.31 E-value=3.1e-14 Score=128.18 Aligned_cols=190 Identities=34% Similarity=0.518 Sum_probs=136.5
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
...+++.|++..+|..+..+..|+.+.+..|.+..++.. +..+..|..++++.|++...+.. +..+ -|+.+-+++|+
T Consensus 78 ~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~-i~~L~~lt~l~ls~NqlS~lp~~-lC~l-pLkvli~sNNk 154 (722)
T KOG0532|consen 78 VFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEA-ICNLEALTFLDLSSNQLSHLPDG-LCDL-PLKVLIVSNNK 154 (722)
T ss_pred hhhhccccccccCchHHHHHHHHHHHHHHhccceecchh-hhhhhHHHHhhhccchhhcCChh-hhcC-cceeEEEecCc
Confidence 344555555555555555555555555555555555443 24555556666666555554443 2222 24555556665
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCcccc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGL 381 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~ 381 (422)
++... ..++..+.|..|+.+.|.+..+|..++++.+|+.+.++.|.+..+|+.+. +-.|..||++.|++..||-++..
T Consensus 155 l~~lp-~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr~ 232 (722)
T KOG0532|consen 155 LTSLP-EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCNKISYLPVDFRK 232 (722)
T ss_pred cccCC-cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccCceeecchhhhh
Confidence 55432 23456678888888888899898888999999999999999998888877 55889999999999999999999
Q ss_pred CCccccEEEccCCCCCccchHHHhhhHHHHHHHHHh
Q 014560 382 LEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 417 (422)
Q Consensus 382 ~~~~L~~l~l~~n~~~~i~~~~~~~~~~~~~~~~~~ 417 (422)
+ ..|++|.|.+|++.+-+++++.+|..++.+|+..
T Consensus 233 m-~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~ 267 (722)
T KOG0532|consen 233 M-RHLQVLQLENNPLQSPPAQICEKGKVHIFKYLST 267 (722)
T ss_pred h-hhheeeeeccCCCCCChHHHHhccceeeeeeecc
Confidence 9 9999999999999999999999999988888753
No 24
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.30 E-value=1.1e-13 Score=124.70 Aligned_cols=196 Identities=31% Similarity=0.444 Sum_probs=155.5
Q ss_pred ceecccccccCCc--hhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcc
Q 014560 27 ELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQL 104 (422)
Q Consensus 27 ~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~ 104 (422)
+|.|++-.+..+| +.-..+..-...|++.|.+..+|..+..+..|+.+.+..|.+..+|..+.++..|.+++++.|++
T Consensus 54 ~l~Ls~rrlk~fpr~a~~~~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~Nql 133 (722)
T KOG0532|consen 54 RLLLSGRRLKEFPRGAASYDLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQL 133 (722)
T ss_pred ccccccchhhcCCCccccccccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchh
Confidence 4556666666654 22245666678888999988898888888889999999998999988899999999999999999
Q ss_pred cccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchh
Q 014560 105 KEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTK 184 (422)
Q Consensus 105 ~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 184 (422)
..+|..+|...|+.|.+++|+++.+|..++....|..++.+.|.+..+++.....
T Consensus 134 S~lp~~lC~lpLkvli~sNNkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l------------------------- 188 (722)
T KOG0532|consen 134 SHLPDGLCDLPLKVLIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYL------------------------- 188 (722)
T ss_pred hcCChhhhcCcceeEEEecCccccCCcccccchhHHHhhhhhhhhhhchHHhhhH-------------------------
Confidence 9999999999999999999999999999998899999999999887765544321
Q ss_pred hhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCCh
Q 014560 185 EDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD 259 (422)
Q Consensus 185 ~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 259 (422)
..++.+.+..|.+..+|..+.. -.|..|+++.|++..+|..|.++..|++|-+.+|.++.-+.
T Consensus 189 -----------~slr~l~vrRn~l~~lp~El~~-LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPA 251 (722)
T KOG0532|consen 189 -----------TSLRDLNVRRNHLEDLPEELCS-LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPA 251 (722)
T ss_pred -----------HHHHHHHHhhhhhhhCCHHHhC-CceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChH
Confidence 3556667777777777777763 35778888888888888888888888888888887766544
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.30 E-value=5.5e-12 Score=117.26 Aligned_cols=120 Identities=35% Similarity=0.448 Sum_probs=65.5
Q ss_pred eecccccccCCchhhhccccCCeEeccCCccccCCCCCccCC-CCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccc
Q 014560 28 LIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCC-SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE 106 (422)
Q Consensus 28 L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~-~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~ 106 (422)
+.+..+.+......+...+.++.|++.++.+..++....... +|+.+++++|.+..+|..+..+++|+.|++++|.+.+
T Consensus 98 l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~ 177 (394)
T COG4886 98 LDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSD 177 (394)
T ss_pred eeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhh
Confidence 344444442223333344556666666666666655555553 6666666666666665555666666666666666666
Q ss_pred ccccccc-ceecEEEcCCCCCCCCCccccccCCccEEEcCCC
Q 014560 107 YCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 147 (422)
Q Consensus 107 l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (422)
++..... ..|+.+.+++|++..++........|+++.+.+|
T Consensus 178 l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N 219 (394)
T COG4886 178 LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN 219 (394)
T ss_pred hhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC
Confidence 5555422 2255566666655555554444444555555555
No 26
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.27 E-value=4.7e-12 Score=100.88 Aligned_cols=98 Identities=24% Similarity=0.388 Sum_probs=25.9
Q ss_pred ccCCcceecChhHHhhcccccceecccccccCCchhhh-ccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccC
Q 014560 6 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIG-SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSAL 84 (422)
Q Consensus 6 ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~-~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l 84 (422)
|..+-|..++. +.+...++.|+|+++.|..+. .+. .+.+|+.|++++|.++.++ .+..++.|++|++++|.++.+
T Consensus 4 lt~~~i~~~~~--~~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i 79 (175)
T PF14580_consen 4 LTANMIEQIAQ--YNNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSI 79 (175)
T ss_dssp -----------------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-
T ss_pred ccccccccccc--ccccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCcc
Confidence 34444555555 556667788888888887664 233 4677888888888887773 467778888888888888877
Q ss_pred chhh-hCCCCCcEEEccCCccccc
Q 014560 85 PAEL-GKLSKLGTLDLHSNQLKEY 107 (422)
Q Consensus 85 ~~~l-~~~~~L~~L~l~~~~~~~l 107 (422)
+..+ ..+++|++|++++|.+.++
T Consensus 80 ~~~l~~~lp~L~~L~L~~N~I~~l 103 (175)
T PF14580_consen 80 SEGLDKNLPNLQELYLSNNKISDL 103 (175)
T ss_dssp CHHHHHH-TT--EEE-TTS---SC
T ss_pred ccchHHhCCcCCEEECcCCcCCCh
Confidence 5544 3577888888887777654
No 27
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.26 E-value=1.9e-11 Score=113.66 Aligned_cols=194 Identities=35% Similarity=0.432 Sum_probs=126.5
Q ss_pred EEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccc--eecEEEcCCCCCCCCCccccccCCccEEEcCCCccc
Q 014560 73 EFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR 150 (422)
Q Consensus 73 ~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 150 (422)
.++...+.+..-...+..++.+..+++.++.+.+++...... .|+.|++++|.+..++..+..+++|+.|+++.|++.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 567777766433344555677888888888888888777776 588888888888877767888888888888888876
Q ss_pred cccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCc
Q 014560 151 TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNS 230 (422)
Q Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~ 230 (422)
.++.... ....++.++++++.+..+|........|+++.++++.
T Consensus 177 ~l~~~~~------------------------------------~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~ 220 (394)
T COG4886 177 DLPKLLS------------------------------------NLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNS 220 (394)
T ss_pred hhhhhhh------------------------------------hhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCc
Confidence 6543221 1135566666666666666655445556777777765
Q ss_pred cccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCC
Q 014560 231 IQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP 305 (422)
Q Consensus 231 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~ 305 (422)
+...+..+.+..++..+.+.++.+...+.. +..+++++.+++++|.+..++. +....+++.++++++.+...
T Consensus 221 ~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~-~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 221 IIELLSSLSNLKNLSGLELSNNKLEDLPES-IGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred ceecchhhhhcccccccccCCceeeeccch-hccccccceecccccccccccc--ccccCccCEEeccCcccccc
Confidence 444444556666666666666655553222 3556667777777776666655 55666677777766655543
No 28
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.26 E-value=3.8e-13 Score=114.31 Aligned_cols=134 Identities=25% Similarity=0.403 Sum_probs=81.7
Q ss_pred CCCCCcEEEecCCcCCCCCh----HHHhcCCCCCEEECCCCCCCc----CCCCCCCCCCCccEEEccCCcCCCCC----C
Q 014560 240 SCASLQTLILSRNKIKDWPD----AILTSLSSLSCLKLDNNPLRQ----VPSDGFKDIPMLQILDLSYNIASLPE----N 307 (422)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~l~l~~~~~~~~~----~ 307 (422)
..+.|+++...+|.+.+.+. ..|..++.|+.+.++.|.+.. ....++..|+.|+.|++.+|.++... .
T Consensus 155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La 234 (382)
T KOG1909|consen 155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA 234 (382)
T ss_pred CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence 34566666666666655433 234555666666666665543 12234566777777777777665321 2
Q ss_pred CCCCCCccCceEEeCCCcCcc-----CCccc-ccCCCCcEEECCCCCCc-----ccCccCcCCCCCCEEeCCCCCCc
Q 014560 308 PPFSSLPHLQELYLRRMQLRE-----APTDI-LRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 308 ~~~~~~~~L~~L~l~~~~i~~-----l~~~~-~~~~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
..+..+++|+.+++++|.+.. +..++ ...|+|+.+.+.+|.|+ .+..++...+.|..|+|++|.+.
T Consensus 235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 234556677777777776661 11122 24678888888888776 23445556788888888888884
No 29
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.19 E-value=7.1e-12 Score=99.84 Aligned_cols=122 Identities=27% Similarity=0.366 Sum_probs=38.4
Q ss_pred CCCEEECCCCCCCcCCCCCCC-CCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCccc-ccCCCCcEEEC
Q 014560 267 SLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDL 344 (422)
Q Consensus 267 ~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~-~~~~~L~~l~l 344 (422)
++++|++.++.+..+.. +. .+.+|+.|++++|.++... .+..+++|++|++++|.|+.+...+ ..+++|+.|++
T Consensus 20 ~~~~L~L~~n~I~~Ie~--L~~~l~~L~~L~Ls~N~I~~l~--~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L 95 (175)
T PF14580_consen 20 KLRELNLRGNQISTIEN--LGATLDKLEVLDLSNNQITKLE--GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYL 95 (175)
T ss_dssp ----------------S----TT-TT--EEE-TTS--S--T--T----TT--EEE--SS---S-CHHHHHH-TT--EEE-
T ss_pred ccccccccccccccccc--hhhhhcCCCEEECCCCCCcccc--CccChhhhhhcccCCCCCCccccchHHhCCcCCEEEC
Confidence 34444444444444322 22 2344445555555444332 2444566666666666666654443 24667777777
Q ss_pred CCCCCcccCc--cCcCCCCCCEEeCCCCCCcccCC----ccccCCccccEEEccC
Q 014560 345 SQNSLQSIPE--GFKNLTSLTELDLSDNNISALPP----ELGLLEPSLQALRLDG 393 (422)
Q Consensus 345 ~~n~l~~l~~--~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~l~l~~ 393 (422)
++|+|..+.+ .+..+++|+.|++.+|.++.-+. .+..+ |+|+.||-..
T Consensus 96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l-P~Lk~LD~~~ 149 (175)
T PF14580_consen 96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL-PSLKVLDGQD 149 (175)
T ss_dssp TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH--TT-SEETTEE
T ss_pred cCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc-ChhheeCCEE
Confidence 7776664432 35667777777777777764432 13333 7777777554
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.18 E-value=5.1e-12 Score=107.52 Aligned_cols=214 Identities=25% Similarity=0.309 Sum_probs=134.4
Q ss_pred hhccccccceeeccCCCCC-----CCCcccccCCCccEEeCCCCcccc----CC-------ccccCCCCCcEEEecCCcC
Q 014560 191 ATRLSVTSKELSLEGMNLS-----AIPSEIWEAGEITKLDLSRNSIQE----LP-------PELSSCASLQTLILSRNKI 254 (422)
Q Consensus 191 ~~~~~~~l~~l~l~~~~~~-----~~~~~~~~~~~L~~L~l~~~~l~~----~~-------~~~~~~~~L~~L~l~~~~~ 254 (422)
......+++.+++++|.+. .+...+...++|+..++++-.... +| +.+..++.|+.++++.|-+
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~ 104 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF 104 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence 3344467778888887665 333444555677777777643221 33 2345667888888888866
Q ss_pred CCCChH----HHhcCCCCCEEECCCCCCCcCCCCC-------------CCCCCCccEEEccCCcCCCCCC----CCCCCC
Q 014560 255 KDWPDA----ILTSLSSLSCLKLDNNPLRQVPSDG-------------FKDIPMLQILDLSYNIASLPEN----PPFSSL 313 (422)
Q Consensus 255 ~~~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~-------------~~~~~~L~~l~l~~~~~~~~~~----~~~~~~ 313 (422)
..-... .++.+..|++|++.+|.+....... .+..+.|+.+.+.+|++..... ..|+..
T Consensus 105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~ 184 (382)
T KOG1909|consen 105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSH 184 (382)
T ss_pred CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhc
Confidence 553322 2355778888888888776433222 3345678888888887764332 235566
Q ss_pred ccCceEEeCCCcCc-----cCCcccccCCCCcEEECCCCCCc-----ccCccCcCCCCCCEEeCCCCCCc-----ccCCc
Q 014560 314 PHLQELYLRRMQLR-----EAPTDILRLQQLRILDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNIS-----ALPPE 378 (422)
Q Consensus 314 ~~L~~L~l~~~~i~-----~l~~~~~~~~~L~~l~l~~n~l~-----~l~~~~~~~~~L~~L~l~~n~l~-----~~~~~ 378 (422)
+.|+.+.+..|.|. .+...+..|++|+.||+.+|.++ .+...+...++|+.|++++|.+. .+...
T Consensus 185 ~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~a 264 (382)
T KOG1909|consen 185 PTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDA 264 (382)
T ss_pred cccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHH
Confidence 78888888877665 22344667888888888888776 34555666677888888888775 22222
Q ss_pred cccCCccccEEEccCCCCCccchHHH
Q 014560 379 LGLLEPSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 379 ~~~~~~~L~~l~l~~n~~~~i~~~~~ 404 (422)
+....|+|+++.+.+|.++.-...+.
T Consensus 265 l~~~~p~L~vl~l~gNeIt~da~~~l 290 (382)
T KOG1909|consen 265 LKESAPSLEVLELAGNEITRDAALAL 290 (382)
T ss_pred HhccCCCCceeccCcchhHHHHHHHH
Confidence 33334788888888887764444333
No 31
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.16 E-value=1.5e-11 Score=107.77 Aligned_cols=130 Identities=24% Similarity=0.154 Sum_probs=58.7
Q ss_pred hcccccceecccccccCCc--hhhhccccCCeEeccCCccccC---CCCCccCCCCCEEEcCCCcCccCchh--hhCCCC
Q 014560 21 SWTMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSALPAE--LGKLSK 93 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~i~~l~~~--l~~~~~ 93 (422)
++.+|+.+.+.++.+...+ +....|++++.|+++.|-+... -.....+++|+.|+++.|.+.....+ -..+++
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 4455555555555554443 2445555555555555544311 12234455555555555554422111 123455
Q ss_pred CcEEEccCCccc--cccccc-ccceecEEEcCCCC-CCCCCccccccCCccEEEcCCCccc
Q 014560 94 LGTLDLHSNQLK--EYCVEA-CQLRLSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLR 150 (422)
Q Consensus 94 L~~L~l~~~~~~--~l~~~~-~~~~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~ 150 (422)
|+.|.++.|.++ ++.... ..+.++.|.+.+|. +..-.....-+..|+.|++++|++.
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 555555555544 111111 11225555555553 1112222334455555555555543
No 32
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=1.7e-11 Score=102.28 Aligned_cols=185 Identities=32% Similarity=0.416 Sum_probs=128.5
Q ss_pred CcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC----hHH-------------------HhcCCCC
Q 014560 212 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP----DAI-------------------LTSLSSL 268 (422)
Q Consensus 212 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~~-------------------~~~~~~L 268 (422)
+..+.-+++|..+.++.|.-..+-..-..-|.|+.+.+.+..+...+ ... ...-..|
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~L 286 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQEL 286 (490)
T ss_pred ccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhh
Confidence 33444467888888888865544332233356666666554333211 000 0111367
Q ss_pred CEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCC
Q 014560 269 SCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNS 348 (422)
Q Consensus 269 ~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~ 348 (422)
++++++.|.++.+... ..-.|.++.|+++.|.+..+.. ++.+++|..|++++|.++.+..+-..+-++++|.+++|.
T Consensus 287 telDLS~N~I~~iDES-vKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N~ 363 (490)
T KOG1259|consen 287 TELDLSGNLITQIDES-VKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQNK 363 (490)
T ss_pred hhccccccchhhhhhh-hhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhhh
Confidence 8888888888877654 6667888999998888876644 777888889999998888776666667788888899988
Q ss_pred CcccCccCcCCCCCCEEeCCCCCCccc--CCccccCCccccEEEccCCCCCccch
Q 014560 349 LQSIPEGFKNLTSLTELDLSDNNISAL--PPELGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 349 l~~l~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
+..+ .++..+-+|..||+++|+|..+ ...+..+ |-|+.+.+.+|+++.+..
T Consensus 364 iE~L-SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~L-PCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 364 IETL-SGLRKLYSLVNLDLSSNQIEELDEVNHIGNL-PCLETLRLTGNPLAGSVD 416 (490)
T ss_pred Hhhh-hhhHhhhhheeccccccchhhHHHhcccccc-cHHHHHhhcCCCccccch
Confidence 8876 4577788899999999988733 3456666 788999999999876654
No 33
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.07 E-value=4.7e-11 Score=99.73 Aligned_cols=130 Identities=29% Similarity=0.343 Sum_probs=69.4
Q ss_pred CccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccC
Q 014560 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 299 (422)
Q Consensus 220 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 299 (422)
.|+++++++|.++.+..+..-.|.++.|+++.|.+..+.. +..+++|+.|++++|.++++.. .-..+-+.+.|.+++
T Consensus 285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n--La~L~~L~~LDLS~N~Ls~~~G-wh~KLGNIKtL~La~ 361 (490)
T KOG1259|consen 285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN--LAELPQLQLLDLSGNLLAECVG-WHLKLGNIKTLKLAQ 361 (490)
T ss_pred hhhhccccccchhhhhhhhhhccceeEEeccccceeeehh--hhhcccceEeecccchhHhhhh-hHhhhcCEeeeehhh
Confidence 4555555555555554444445555555555555555443 3445555555555555544322 112344555555555
Q ss_pred CcCCCCCCCCCCCCccCceEEeCCCcCccCC--cccccCCCCcEEECCCCCCcccCc
Q 014560 300 NIASLPENPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPE 354 (422)
Q Consensus 300 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~~~~L~~l~l~~n~l~~l~~ 354 (422)
|.+... +.+..+-+|..|++.+|+|..+. ..++++|.|+.+.+.+|.++.+++
T Consensus 362 N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd 416 (490)
T KOG1259|consen 362 NKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD 416 (490)
T ss_pred hhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence 554432 22444555666666666665332 335666677777777776665543
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.06 E-value=1.3e-10 Score=115.74 Aligned_cols=128 Identities=23% Similarity=0.332 Sum_probs=79.5
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCCc--cccCCC-CCccCCCCCEEEcCCC-cCccCchhhhCCCCC
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR--ILSIPS-SISGCCSLAEFYMGNN-ALSALPAELGKLSKL 94 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~--~~~l~~-~~~~~~~L~~L~l~~~-~i~~l~~~l~~~~~L 94 (422)
.......|..++.++.+..++... .+++|++|-+..+. +..++. .|..++.|+.|++++| .+.++|..++.+-+|
T Consensus 519 ~~~~~~~rr~s~~~~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~L 597 (889)
T KOG4658|consen 519 VKSWNSVRRMSLMNNKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHL 597 (889)
T ss_pred ccchhheeEEEEeccchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhh
Confidence 344456666677666665554333 33467777776664 444433 3566777777777755 455777777777777
Q ss_pred cEEEccCCcccccccccccce-ecEEEcCCCCCCC-CCccccccCCccEEEcCCC
Q 014560 95 GTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGN 147 (422)
Q Consensus 95 ~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~ 147 (422)
|+|+++++.+..+|.++...+ |.+|++..+.-.. ++.....+.+|++|.+...
T Consensus 598 ryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s 652 (889)
T KOG4658|consen 598 RYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRS 652 (889)
T ss_pred hcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeecc
Confidence 777777777777777766666 7777776654322 3444555777777766544
No 35
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=2.9e-11 Score=105.99 Aligned_cols=200 Identities=28% Similarity=0.279 Sum_probs=89.4
Q ss_pred cccceeeccCCCCCCCC--cccccCCCccEEeCCCCcccc---CCccccCCCCCcEEEecCCcCCCCChH-HHhcCCCCC
Q 014560 196 VTSKELSLEGMNLSAIP--SEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLS 269 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~--~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~ 269 (422)
..++.+.++++.....+ .....+++++.|+++.|-+.. +.....++++|+.|+++.|.+...... .-..++.|+
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK 200 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLK 200 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhh
Confidence 34555555555544333 233445566666666554433 111233555566666655544331111 112345555
Q ss_pred EEECCCCCCCcCCC-CCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc--ccccCCCCcEEECCC
Q 014560 270 CLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLRILDLSQ 346 (422)
Q Consensus 270 ~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~~~~L~~l~l~~ 346 (422)
.|.++.|.++.-.- .....+|+|+.|.+..|..-.........+..|++|++++|.+...++ ..+.++.|+.|+++.
T Consensus 201 ~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~ 280 (505)
T KOG3207|consen 201 QLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSS 280 (505)
T ss_pred eEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccc
Confidence 55555555442000 012334555555555553222222223334455555555555544432 234455555555555
Q ss_pred CCCccc--Ccc-----CcCCCCCCEEeCCCCCCcccC--CccccCCccccEEEccCCCC
Q 014560 347 NSLQSI--PEG-----FKNLTSLTELDLSDNNISALP--PELGLLEPSLQALRLDGNPL 396 (422)
Q Consensus 347 n~l~~l--~~~-----~~~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~l~l~~n~~ 396 (422)
|++.++ |++ ...+++|+.|++..|+|...+ .+++.. ++|+.|.+..|.+
T Consensus 281 tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l-~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 281 TGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTL-ENLKHLRITLNYL 338 (505)
T ss_pred cCcchhcCCCccchhhhcccccceeeecccCccccccccchhhcc-chhhhhhcccccc
Confidence 555533 222 233455555555555553222 223333 4444444444443
No 36
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.96 E-value=1.1e-10 Score=108.66 Aligned_cols=127 Identities=28% Similarity=0.376 Sum_probs=56.0
Q ss_pred cccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccC
Q 014560 22 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 101 (422)
Q Consensus 22 ~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~ 101 (422)
+..++.+.+..+.+..+-..+..+.+|..+++.+|.+..+...+..+++|+++++++|.|+.+ ..+..++.|+.|++++
T Consensus 71 l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~ 149 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSG 149 (414)
T ss_pred hHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheecc
Confidence 334444444444444433334444555555555555544433244445555555555555544 2234444455555555
Q ss_pred CcccccccccccceecEEEcCCCCCCCCCcc-ccccCCccEEEcCCCcc
Q 014560 102 NQLKEYCVEACQLRLSVLDLSNNSLSGLPPE-IGKMTTLRKLLLTGNPL 149 (422)
Q Consensus 102 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~ 149 (422)
|.+..+........|+.+++++|.+..+... ...+.+++.+++.+|.+
T Consensus 150 N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i 198 (414)
T KOG0531|consen 150 NLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSI 198 (414)
T ss_pred CcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCch
Confidence 5444443333322344444444444443221 23444444444444443
No 37
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.95 E-value=9.8e-10 Score=109.53 Aligned_cols=103 Identities=26% Similarity=0.324 Sum_probs=83.2
Q ss_pred CceeeccCCc--ceecChhHHhhcccccceecccccc-cCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcC
Q 014560 1 MSKLDVEGNK--LTVLSNNLIASWTMLTELIASKNLL-NGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 77 (422)
Q Consensus 1 L~~L~ls~~~--i~~i~~~~~~~~~~L~~L~l~~~~i-~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 77 (422)
|+.|-+.+|. +..++...|..++.|++|++++|.- +.+|+.++.+-+||+|+++++.++.+|..+.+++.|.+|++.
T Consensus 547 L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~ 626 (889)
T KOG4658|consen 547 LRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLE 626 (889)
T ss_pred cceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccc
Confidence 4566667775 6777777788899999999997654 678999999999999999999999999999999999999998
Q ss_pred CCcCc-cCchhhhCCCCCcEEEccCCc
Q 014560 78 NNALS-ALPAELGKLSKLGTLDLHSNQ 103 (422)
Q Consensus 78 ~~~i~-~l~~~l~~~~~L~~L~l~~~~ 103 (422)
.+.-. .+|.....+++||+|.+....
T Consensus 627 ~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 627 VTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccccccchhhhcccccEEEeeccc
Confidence 87543 446666668999999887654
No 38
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.93 E-value=1.9e-10 Score=107.18 Aligned_cols=174 Identities=36% Similarity=0.527 Sum_probs=107.8
Q ss_pred CccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCCh-HHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEcc
Q 014560 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 298 (422)
Q Consensus 220 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 298 (422)
.|+.|++++|.+..+. .+..+++|+.+++++|.+..+.. . ...+.+++.+++..+.+..+.. +..+..+..+++.
T Consensus 141 ~L~~L~l~~N~i~~~~-~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~~--~~~~~~l~~~~l~ 216 (414)
T KOG0531|consen 141 LLKELNLSGNLISDIS-GLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIEG--LDLLKKLVLLSLL 216 (414)
T ss_pred chhhheeccCcchhcc-CCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcccc--hHHHHHHHHhhcc
Confidence 3566666666665543 24445666666666666665544 2 3556667777777666655433 3344445555666
Q ss_pred CCcCCCCCCCCCCCCc--cCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc---
Q 014560 299 YNIASLPENPPFSSLP--HLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--- 373 (422)
Q Consensus 299 ~~~~~~~~~~~~~~~~--~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~--- 373 (422)
.|.+..... +.... .|+.+++.++.+...+..+..++.+..+++..+.+..+ +.+...+.+..+....+.+.
T Consensus 217 ~n~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~~~~~~~~~~l~~l~~~~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 217 DNKISKLEG--LNELVMLHLRELYLSGNRISRSPEGLENLKNLPVLDLSSNRISNL-EGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred cccceeccC--cccchhHHHHHHhcccCccccccccccccccccccchhhcccccc-ccccccchHHHhccCcchhcchh
Confidence 665554332 12222 37888888888887766677778888888888888755 33555567777777777654
Q ss_pred ccCCc--cccCCccccEEEccCCCCCccch
Q 014560 374 ALPPE--LGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 374 ~~~~~--~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
..... .... +.++.+.+..+++.....
T Consensus 294 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 322 (414)
T KOG0531|consen 294 AISQEYITSAA-PTLVTLTLELNPIRKISS 322 (414)
T ss_pred hhhcccccccc-ccccccccccCccccccc
Confidence 22222 3444 788888898888876554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.92 E-value=7e-10 Score=72.69 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=36.8
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNR 57 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~ 57 (422)
|++|++++|+|..++..+|.++++|++|++++|.++.++ ..|.++++|++|++++|.
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 456666666666666666666666666666666666553 456666666666666664
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.76 E-value=7.8e-09 Score=67.68 Aligned_cols=57 Identities=42% Similarity=0.693 Sum_probs=23.2
Q ss_pred CcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 244 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
|++|++++|.+..+++..|..+++|+.|++++|.+..+++..|..+++|+++++++|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 344444444444444333344444444444444444443333444444444444333
No 41
>PLN03150 hypothetical protein; Provisional
Probab=98.60 E-value=9.9e-08 Score=93.21 Aligned_cols=102 Identities=25% Similarity=0.389 Sum_probs=85.1
Q ss_pred cccceeccccccc-CCchhhhccccCCeEeccCCccc-cCCCCCccCCCCCEEEcCCCcCc-cCchhhhCCCCCcEEEcc
Q 014560 24 MLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLH 100 (422)
Q Consensus 24 ~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~ 100 (422)
.++.|+|+++.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.+. .+|..+..+++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4788999999985 67888999999999999999987 77888999999999999999988 788999999999999999
Q ss_pred CCccc-ccccccccc--eecEEEcCCCC
Q 014560 101 SNQLK-EYCVEACQL--RLSVLDLSNNS 125 (422)
Q Consensus 101 ~~~~~-~l~~~~~~~--~L~~L~l~~~~ 125 (422)
+|.+. .+|..+... .+..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99887 555554332 35677777775
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.59 E-value=1e-07 Score=93.12 Aligned_cols=105 Identities=31% Similarity=0.390 Sum_probs=88.0
Q ss_pred CccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc-cCCcccccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEeCC
Q 014560 291 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLS 368 (422)
Q Consensus 291 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~l~ 368 (422)
.++.|+++++.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++ .+|+.+.++++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3778899999998888888889999999999999887 77878889999999999999998 678889999999999999
Q ss_pred CCCCc-ccCCccccCCccccEEEccCCC
Q 014560 369 DNNIS-ALPPELGLLEPSLQALRLDGNP 395 (422)
Q Consensus 369 ~n~l~-~~~~~~~~~~~~L~~l~l~~n~ 395 (422)
+|.++ .+|..+......+..+++.+|+
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 99887 7777665543466778887775
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.47 E-value=9.7e-10 Score=102.55 Aligned_cols=179 Identities=29% Similarity=0.359 Sum_probs=126.9
Q ss_pred CcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecC-----------C--cCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 212 PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSR-----------N--KIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 212 ~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~-----------~--~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
|-.++.+..|+.|++.+|.+...-....--..|++|.-.+ | .+.+-+.+ .+|...+++.|.+
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W-----n~L~~a~fsyN~L 176 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW-----NKLATASFSYNRL 176 (1096)
T ss_pred CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh-----hhHhhhhcchhhH
Confidence 6677888999999999998765211111112333332221 1 11122211 3567777788877
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCccCc
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFK 357 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~~~ 357 (422)
..+... +.-++.++.|++++|++.... .+..++.|++|++++|.++.+|.. ..+|. |+.|.+++|-++++ .++.
T Consensus 177 ~~mD~S-Lqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l~tL-~gie 251 (1096)
T KOG1859|consen 177 VLMDES-LQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNALTTL-RGIE 251 (1096)
T ss_pred HhHHHH-HHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhhh-heeeeecccHHHhh-hhHH
Confidence 665443 667789999999999988765 588899999999999999988765 34554 99999999999987 4578
Q ss_pred CCCCCCEEeCCCCCCcccC--CccccCCccccEEEccCCCCCccch
Q 014560 358 NLTSLTELDLSDNNISALP--PELGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 358 ~~~~L~~L~l~~n~l~~~~--~~~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
++.+|..||+++|-|.... ..++.+ ..|++|++.+|++..-++
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCccccCHH
Confidence 8999999999999776322 235555 789999999999864443
No 44
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=3.7e-09 Score=88.47 Aligned_cols=174 Identities=22% Similarity=0.259 Sum_probs=96.9
Q ss_pred cCCeEeccCCccc--cCCCCCccCCCCCEEEcCCCcCc-cCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCC
Q 014560 47 RLIRLDLHQNRIL--SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSN 123 (422)
Q Consensus 47 ~L~~L~l~~~~~~--~l~~~~~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~ 123 (422)
.|++||++...|+ .+-..+..|.+|+.|.+.+..++ .+...+++..+|+.|+++.+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~s-------------------- 245 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCS-------------------- 245 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccc--------------------
Confidence 4666677666555 22233566666666666666665 445556666666666665432
Q ss_pred CCCCC--CCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhcccccccee
Q 014560 124 NSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 201 (422)
Q Consensus 124 ~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 201 (422)
.++. +--.+..|+.|..|++++|.+..-...+
T Consensus 246 -G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv--------------------------------------------- 279 (419)
T KOG2120|consen 246 -GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV--------------------------------------------- 279 (419)
T ss_pred -ccchhHHHHHHHhhhhHhhcCchHhhccchhhhH---------------------------------------------
Confidence 2222 1123667888888888887543210000
Q ss_pred eccCCCCCCCCccccc-CCCccEEeCCCCc--c--ccCCccccCCCCCcEEEecCC-cCCCCChHHHhcCCCCCEEECCC
Q 014560 202 SLEGMNLSAIPSEIWE-AGEITKLDLSRNS--I--QELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 202 ~l~~~~~~~~~~~~~~-~~~L~~L~l~~~~--l--~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
.+.+ ..+++.|+++|+. + ..+..-...|++|.+||++.| .+++.-...|..++.|+++.++.
T Consensus 280 ------------~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsR 347 (419)
T KOG2120|consen 280 ------------AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSR 347 (419)
T ss_pred ------------HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhh
Confidence 0011 2356666676663 1 112222457788888888876 34443334456677788888877
Q ss_pred CCCCcCCCC---CCCCCCCccEEEccCC
Q 014560 276 NPLRQVPSD---GFKDIPMLQILDLSYN 300 (422)
Q Consensus 276 ~~~~~~~~~---~~~~~~~L~~l~l~~~ 300 (422)
|- .+++. .+...|.|.+|++.|+
T Consensus 348 CY--~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 348 CY--DIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred hc--CCChHHeeeeccCcceEEEEeccc
Confidence 63 23332 2445566777776655
No 45
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.41 E-value=1.1e-08 Score=95.78 Aligned_cols=120 Identities=29% Similarity=0.348 Sum_probs=85.5
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCC-CccCCCCCEEEcCCCcC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~i 81 (422)
..+.++|.+...... +.-++.|+.|+|++|++.... .+..|++|++||+++|.+..+|.. ..+|+ |+.|++++|.+
T Consensus 168 ~a~fsyN~L~~mD~S-Lqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~l 244 (1096)
T KOG1859|consen 168 TASFSYNRLVLMDES-LQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNAL 244 (1096)
T ss_pred hhhcchhhHHhHHHH-HHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhhh-heeeeecccHH
Confidence 345666777665554 777788888888888887665 778888888889988888877653 24455 88888888888
Q ss_pred ccCchhhhCCCCCcEEEccCCcccccccc---cccceecEEEcCCCCC
Q 014560 82 SALPAELGKLSKLGTLDLHSNQLKEYCVE---ACQLRLSVLDLSNNSL 126 (422)
Q Consensus 82 ~~l~~~l~~~~~L~~L~l~~~~~~~l~~~---~~~~~L~~L~l~~~~~ 126 (422)
+.+ ..+.++.+|+.||+++|-+.+.... ..-..|..|.+.||.+
T Consensus 245 ~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 245 TTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred Hhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 877 4578888888888888876643322 1222366666666654
No 46
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.41 E-value=4.3e-08 Score=81.15 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=56.5
Q ss_pred HhhcccccceecccccccCC-----chhhhccccCCeEeccCCccc-----------cCCCCCccCCCCCEEEcCCCcCc
Q 014560 19 IASWTMLTELIASKNLLNGM-----PETIGSLSRLIRLDLHQNRIL-----------SIPSSISGCCSLAEFYMGNNALS 82 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~-----~~~~~~~~~L~~L~l~~~~~~-----------~l~~~~~~~~~L~~L~l~~~~i~ 82 (422)
+..+..+..+++++|.|++- ...+.+-.+|+..+++.-... -+.+++-.|+.|+.+++++|.+.
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 33457788888888888642 333455567777777654211 12244667888888888888776
Q ss_pred -cCch----hhhCCCCCcEEEccCCccc
Q 014560 83 -ALPA----ELGKLSKLGTLDLHSNQLK 105 (422)
Q Consensus 83 -~l~~----~l~~~~~L~~L~l~~~~~~ 105 (422)
..|. -++.-+.|.+|.+++|.+.
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnGlG 133 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNGLG 133 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCCCC
Confidence 3333 3566788888888887655
No 47
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.40 E-value=1.6e-08 Score=74.80 Aligned_cols=108 Identities=22% Similarity=0.273 Sum_probs=71.1
Q ss_pred ccccceecccccccCCchhh---hccccCCeEeccCCccccCCCCCc-cCCCCCEEEcCCCcCccCchhhhCCCCCcEEE
Q 014560 23 TMLTELIASKNLLNGMPETI---GSLSRLIRLDLHQNRILSIPSSIS-GCCSLAEFYMGNNALSALPAELGKLSKLGTLD 98 (422)
Q Consensus 23 ~~L~~L~l~~~~i~~~~~~~---~~~~~L~~L~l~~~~~~~l~~~~~-~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~ 98 (422)
..+-.++|++|.+..+++.. ....+|+..++++|.+..+|+.|. ..+..+.+++.+|.++++|..+..++.|+.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 34556777777776555443 445667777888888887777663 44577888888888888888888888888888
Q ss_pred ccCCcccccccccccce-ecEEEcCCCCCCCCC
Q 014560 99 LHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLP 130 (422)
Q Consensus 99 l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~ 130 (422)
++.|.+...+..+.+.. +..|+..++....++
T Consensus 107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEID 139 (177)
T ss_pred cccCccccchHHHHHHHhHHHhcCCCCccccCc
Confidence 87777666555544433 444444444444433
No 48
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.32 E-value=2.2e-06 Score=66.00 Aligned_cols=9 Identities=22% Similarity=0.921 Sum_probs=2.2
Q ss_pred CCCCcEEEe
Q 014560 241 CASLQTLIL 249 (422)
Q Consensus 241 ~~~L~~L~l 249 (422)
+++|+.+.+
T Consensus 11 ~~~l~~i~~ 19 (129)
T PF13306_consen 11 CSNLESITF 19 (129)
T ss_dssp -TT--EEEE
T ss_pred CCCCCEEEE
Confidence 333333333
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.30 E-value=1e-06 Score=52.62 Aligned_cols=39 Identities=36% Similarity=0.628 Sum_probs=22.9
Q ss_pred CCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccc
Q 014560 70 SLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYC 108 (422)
Q Consensus 70 ~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~ 108 (422)
+|++|++++|.++++|..+.++++|+.|++++|.+++++
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 566666666666666555666666666666666665543
No 50
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.29 E-value=1.6e-06 Score=68.84 Aligned_cols=125 Identities=27% Similarity=0.400 Sum_probs=82.0
Q ss_pred ceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 199 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
+.+++.+..+..+...-....+...+++++|.+..++ .|..++.|..|.+.+|.|+.+.+..-..+++|..|.+.+|.+
T Consensus 22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccccccccccchhhccccccccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 3444444444433331112356778888888887664 477788899999999998888887767788899999988877
Q ss_pred CcCCC-CCCCCCCCccEEEccCCcCCCCCC---CCCCCCccCceEEeCCC
Q 014560 279 RQVPS-DGFKDIPMLQILDLSYNIASLPEN---PPFSSLPHLQELYLRRM 324 (422)
Q Consensus 279 ~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~ 324 (422)
..+.. +.+..||+|++|.+-+|.+..... ..+..+|+|+.|++++.
T Consensus 101 ~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 101 QELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred hhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 65433 235667778888777776554321 23445566666666554
No 51
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.2e-08 Score=82.98 Aligned_cols=125 Identities=22% Similarity=0.213 Sum_probs=75.3
Q ss_pred cccceeccccccc--CCchhhhccccCCeEeccCCccc-cCCCCCccCCCCCEEEcCCC-cCccC--chhhhCCCCCcEE
Q 014560 24 MLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRIL-SIPSSISGCCSLAEFYMGNN-ALSAL--PAELGKLSKLGTL 97 (422)
Q Consensus 24 ~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~l~~~-~i~~l--~~~l~~~~~L~~L 97 (422)
.|++++|+...|+ ++..-++.|.+|+.|.+.++.+. .+-..+....+|+.++++.+ .+++. .--+.+++.|..|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4677777776664 33455667777777777777655 22233556667777777765 34422 2336667777777
Q ss_pred EccCCcccc--ccccccc--ceecEEEcCCCCC----CCCCccccccCCccEEEcCCCc
Q 014560 98 DLHSNQLKE--YCVEACQ--LRLSVLDLSNNSL----SGLPPEIGKMTTLRKLLLTGNP 148 (422)
Q Consensus 98 ~l~~~~~~~--l~~~~~~--~~L~~L~l~~~~~----~~~~~~~~~l~~L~~L~l~~~~ 148 (422)
+++.|.... +...... .++..|+++|+.- +++..-...++++.+||++++.
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v 324 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV 324 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence 777765441 1111111 1377788887742 2233345688999999998874
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.28 E-value=6.1e-07 Score=74.51 Aligned_cols=137 Identities=22% Similarity=0.218 Sum_probs=72.0
Q ss_pred hcCCCCCEEECCCCCCCcCCC----CCCCCCCCccEEEccCCcCCCCCCCC-------------CCCCccCceEEeCCCc
Q 014560 263 TSLSSLSCLKLDNNPLRQVPS----DGFKDIPMLQILDLSYNIASLPENPP-------------FSSLPHLQELYLRRMQ 325 (422)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~l~l~~~~~~~~~~~~-------------~~~~~~L~~L~l~~~~ 325 (422)
-.||.|+.+++++|.+..-.+ ..+++-+.|..|.+++|.+.-....- ...-|.|++++...|.
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 445666666666655443111 11233455666666655443221111 1234667777777776
Q ss_pred CccCCcc-----cccCCCCcEEECCCCCCcc--c----CccCcCCCCCCEEeCCCCCCcc-----cCCccccCCccccEE
Q 014560 326 LREAPTD-----ILRLQQLRILDLSQNSLQS--I----PEGFKNLTSLTELDLSDNNISA-----LPPELGLLEPSLQAL 389 (422)
Q Consensus 326 i~~l~~~-----~~~~~~L~~l~l~~n~l~~--l----~~~~~~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~l 389 (422)
+...+.. +..-..|+.+.+.+|.|+. + ...+..+.+|+.||+.+|.++. +...+..+ +.|+.|
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W-~~lrEL 247 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEW-NLLREL 247 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhccc-chhhhc
Confidence 6544332 1222467777777777661 1 2234567777777777776651 11223333 456777
Q ss_pred EccCCCCCccc
Q 014560 390 RLDGNPLRSIR 400 (422)
Q Consensus 390 ~l~~n~~~~i~ 400 (422)
.+.+|-++.-.
T Consensus 248 ~lnDClls~~G 258 (388)
T COG5238 248 RLNDCLLSNEG 258 (388)
T ss_pred cccchhhcccc
Confidence 77777766433
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.25 E-value=6.9e-07 Score=53.39 Aligned_cols=36 Identities=44% Similarity=0.674 Sum_probs=15.7
Q ss_pred CCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc
Q 014560 338 QLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 338 ~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
+|++|++++|+|+.+|..++++++|+.|++++|+|+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCC
Confidence 344444444444444443444444444444444444
No 54
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=98.21 E-value=3.8e-06 Score=64.63 Aligned_cols=123 Identities=17% Similarity=0.312 Sum_probs=57.8
Q ss_pred ChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc-ccccC
Q 014560 258 PDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRL 336 (422)
Q Consensus 258 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~ 336 (422)
+..+|..+.+|+.+.+.. .+..++...|..+++++.+.+.++ +.......|..+++++.+.+.+ .+..++. .+..+
T Consensus 4 ~~~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 4 GNNAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp -TTTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred CHHHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 344566667777777764 456666666777777777777664 5555556667776777777755 3443333 34457
Q ss_pred CCCcEEECCCCCCcccC-ccCcCCCCCCEEeCCCCCCcccCCccccCCccc
Q 014560 337 QQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSL 386 (422)
Q Consensus 337 ~~L~~l~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (422)
+.++.+++..+ ++.++ ..|.++ .|+.+.+.+ .++.++...+..|++|
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 77777777654 55443 346665 777777765 5666666666665554
No 55
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.19 E-value=3.3e-06 Score=67.17 Aligned_cols=82 Identities=26% Similarity=0.332 Sum_probs=35.6
Q ss_pred CcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCC-CCCCCCCCccCceEEeC
Q 014560 244 LQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP-ENPPFSSLPHLQELYLR 322 (422)
Q Consensus 244 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~ 322 (422)
...+++++|.+...+. |+.++.|.+|.+..|+++.+.+.--.-+++|..|.+.+|.+... +...+..||+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l~~--lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKLDN--LPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhccc--CCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 3344455544444322 34445555555555555544443222334445555544443321 11223444444444444
Q ss_pred CCcCc
Q 014560 323 RMQLR 327 (422)
Q Consensus 323 ~~~i~ 327 (422)
+|.++
T Consensus 122 ~Npv~ 126 (233)
T KOG1644|consen 122 GNPVE 126 (233)
T ss_pred CCchh
Confidence 44443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.17 E-value=6.5e-07 Score=87.39 Aligned_cols=104 Identities=23% Similarity=0.305 Sum_probs=76.9
Q ss_pred CceeeccCCcce--ecChhHHhhcccccceeccccccc--CCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEc
Q 014560 1 MSKLDVEGNKLT--VLSNNLIASWTMLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 76 (422)
Q Consensus 1 L~~L~ls~~~i~--~i~~~~~~~~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l 76 (422)
|++||++|.... .=+...-.-+|.|++|.+.+-.+. ++.....++++|+.||+|++.++.+ ..++++++|++|.+
T Consensus 124 L~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~m 202 (699)
T KOG3665|consen 124 LQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSM 202 (699)
T ss_pred hhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhc
Confidence 578888886633 222233445689999999887773 2344567889999999999998888 67889999999999
Q ss_pred CCCcCccC--chhhhCCCCCcEEEccCCccc
Q 014560 77 GNNALSAL--PAELGKLSKLGTLDLHSNQLK 105 (422)
Q Consensus 77 ~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~ 105 (422)
.+-.+..- -..+.++++|++||+|.....
T Consensus 203 rnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~ 233 (699)
T KOG3665|consen 203 RNLEFESYQDLIDLFNLKKLRVLDISRDKNN 233 (699)
T ss_pred cCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence 88777632 245778899999999876533
No 57
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.17 E-value=1.3e-07 Score=83.01 Aligned_cols=299 Identities=18% Similarity=0.119 Sum_probs=166.2
Q ss_pred eecEEEcCCCCCCC---CCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhh
Q 014560 115 RLSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMA 191 (422)
Q Consensus 115 ~L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (422)
.|+.|.+.|+.-.. +-.....++++++|.+.++.. ++ ......+......+..+....+....+..+...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~--iT-----d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~l 211 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKK--IT-----DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYL 211 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhccee--cc-----HHHHHHHHHhcchhhhhhhcccchhHHHHHHHH
Confidence 47888888876443 444466788888888877742 11 111122222223333333333455555666666
Q ss_pred hccccccceeeccCCCCC---CCCcccccCCCccEEeCCCCcccc---CCccccCCCCCcEEEecCC-cCCCCChHHH-h
Q 014560 192 TRLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQE---LPPELSSCASLQTLILSRN-KIKDWPDAIL-T 263 (422)
Q Consensus 192 ~~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~---~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~-~ 263 (422)
...+.+++.++++-+.-. .+.....+.+.++.+...||.-.. +...-+.+..+.++++..| .+++...+.. .
T Consensus 212 a~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~ 291 (483)
T KOG4341|consen 212 AEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIAC 291 (483)
T ss_pred HHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhh
Confidence 666777777777654322 222233334456666566653221 1111234555666666665 3444332222 3
Q ss_pred cCCCCCEEECCCCCC-CcCC-CCCCCCCCCccEEEccCCc-CCCCCCCCC-CCCccCceEEeCCCcCc---cCCcccccC
Q 014560 264 SLSSLSCLKLDNNPL-RQVP-SDGFKDIPMLQILDLSYNI-ASLPENPPF-SSLPHLQELYLRRMQLR---EAPTDILRL 336 (422)
Q Consensus 264 ~~~~L~~L~l~~~~~-~~~~-~~~~~~~~~L~~l~l~~~~-~~~~~~~~~-~~~~~L~~L~l~~~~i~---~l~~~~~~~ 336 (422)
.+..|+.+..+.+.- +... ..--.++++|+.+.+.++. ++......+ .+++.|+.+++.++... .+...-.+|
T Consensus 292 ~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C 371 (483)
T KOG4341|consen 292 GCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNC 371 (483)
T ss_pred hhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCC
Confidence 466788888776532 1110 0112356888888888773 333332233 45678888888888544 243444578
Q ss_pred CCCcEEECCCCCC-c-----ccCccCcCCCCCCEEeCCCCCC-c-ccCCccccCCccccEEEccCCCC-CccchHHHhhh
Q 014560 337 QQLRILDLSQNSL-Q-----SIPEGFKNLTSLTELDLSDNNI-S-ALPPELGLLEPSLQALRLDGNPL-RSIRRTILDRG 407 (422)
Q Consensus 337 ~~L~~l~l~~n~l-~-----~l~~~~~~~~~L~~L~l~~n~l-~-~~~~~~~~~~~~L~~l~l~~n~~-~~i~~~~~~~~ 407 (422)
+.|+.+.++.|.. + .+..+-.....+..+.++++.. + ........+ +.|+.+++-+|.- +.-+...|...
T Consensus 372 ~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c-~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 372 PRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSIC-RNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred chhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhC-cccceeeeechhhhhhhhhHHHHhh
Confidence 9999999998843 2 2234445667889999999964 4 333444444 8999999888853 33333444443
Q ss_pred HH--HHHHHHHhhCCC
Q 014560 408 TK--AVLKYLKDKIPE 421 (422)
Q Consensus 408 ~~--~~~~~~~~~~p~ 421 (422)
.. .+.+|++..-||
T Consensus 451 lp~i~v~a~~a~~t~p 466 (483)
T KOG4341|consen 451 LPNIKVHAYFAPVTPP 466 (483)
T ss_pred CccceehhhccCCCCc
Confidence 22 224666665554
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.17 E-value=1.8e-07 Score=69.28 Aligned_cols=112 Identities=23% Similarity=0.291 Sum_probs=95.1
Q ss_pred eeeccCCcceecChh--HHhhcccccceecccccccCCchhh-hccccCCeEeccCCccccCCCCCccCCCCCEEEcCCC
Q 014560 3 KLDVEGNKLTVLSNN--LIASWTMLTELIASKNLLNGMPETI-GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~--~~~~~~~L~~L~l~~~~i~~~~~~~-~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 79 (422)
.+||+.|++-.++.. .+.+...|...+|++|.+..+|..| ..++.+++|++++|.++.+|..+..++.|+.++++.|
T Consensus 31 ~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N 110 (177)
T KOG4579|consen 31 FLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN 110 (177)
T ss_pred hcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC
Confidence 578999987765543 2455578888999999999998776 4567999999999999999999999999999999999
Q ss_pred cCccCchhhhCCCCCcEEEccCCcccccccccccc
Q 014560 80 ALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL 114 (422)
Q Consensus 80 ~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~ 114 (422)
.+...|..+..+.+|..|+..+|....++......
T Consensus 111 ~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~~s 145 (177)
T KOG4579|consen 111 PLNAEPRVIAPLIKLDMLDSPENARAEIDVDLFYS 145 (177)
T ss_pred ccccchHHHHHHHhHHHhcCCCCccccCcHHHhcc
Confidence 99999999888999999999999888777665443
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.15 E-value=3.3e-05 Score=69.78 Aligned_cols=52 Identities=17% Similarity=0.368 Sum_probs=26.6
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCC-ccccCCccccCCCCCcEEEecCC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQELPPELSSCASLQTLILSRN 252 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~~~~~~~~~~~L~~L~l~~~ 252 (422)
..++.|++++|.+..+|. -..+|++|.+++| .++.+|..+ .++|+.|.+++|
T Consensus 52 ~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 455566666665555551 1234666666554 333344333 245666666655
No 60
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.08 E-value=1e-06 Score=74.23 Aligned_cols=83 Identities=27% Similarity=0.344 Sum_probs=39.2
Q ss_pred cCCCCCEEEcCCCcCc---cCchhhhCCCCCcEEEccCCccccccccc-ccce-ecEEEcCCCCCCC--CCccccccCCc
Q 014560 67 GCCSLAEFYMGNNALS---ALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSNNSLSG--LPPEIGKMTTL 139 (422)
Q Consensus 67 ~~~~L~~L~l~~~~i~---~l~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~-L~~L~l~~~~~~~--~~~~~~~l~~L 139 (422)
.++.++++++.+|.++ ++...+.++|.|++|+++.|.+...-... .+.. |+.+.+.|+.+.. ....+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 3444555555555554 23333445555555555555544211111 1222 5555555544432 33345556666
Q ss_pred cEEEcCCCcc
Q 014560 140 RKLLLTGNPL 149 (422)
Q Consensus 140 ~~L~l~~~~~ 149 (422)
+.+.++.|.+
T Consensus 149 telHmS~N~~ 158 (418)
T KOG2982|consen 149 TELHMSDNSL 158 (418)
T ss_pred hhhhhccchh
Confidence 6666666643
No 61
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.04 E-value=1.8e-07 Score=82.17 Aligned_cols=153 Identities=21% Similarity=0.227 Sum_probs=94.2
Q ss_pred cCCCCCcEEEecCC-cCCCCChHHH-hcCCCCCEEECCCCC-CCcCCCCCC-CCCCCccEEEccCCcCCCC--CCCCCCC
Q 014560 239 SSCASLQTLILSRN-KIKDWPDAIL-TSLSSLSCLKLDNNP-LRQVPSDGF-KDIPMLQILDLSYNIASLP--ENPPFSS 312 (422)
Q Consensus 239 ~~~~~L~~L~l~~~-~~~~~~~~~~-~~~~~L~~L~l~~~~-~~~~~~~~~-~~~~~L~~l~l~~~~~~~~--~~~~~~~ 312 (422)
..+..|+.+..+++ .+++...+.+ .++++|+.+.+..|+ ++...+..+ .+++.|+.+++.++..... ....-.+
T Consensus 291 ~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~ 370 (483)
T KOG4341|consen 291 CGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRN 370 (483)
T ss_pred hhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccC
Confidence 35677788877776 3444433333 346788888887774 333333222 2567788888877643322 2223356
Q ss_pred CccCceEEeCCCc-Ccc-----CCcccccCCCCcEEECCCCCCc--ccCccCcCCCCCCEEeCCCCC-Cc--ccCCcccc
Q 014560 313 LPHLQELYLRRMQ-LRE-----APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNN-IS--ALPPELGL 381 (422)
Q Consensus 313 ~~~L~~L~l~~~~-i~~-----l~~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~L~l~~n~-l~--~~~~~~~~ 381 (422)
|+.|+.+.++.|. ++. +...-.+...|+.+.+.+|... ..-+.+..|++|+.+++-+|+ ++ .+.....+
T Consensus 371 C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~ 450 (483)
T KOG4341|consen 371 CPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATH 450 (483)
T ss_pred CchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhh
Confidence 7888888888773 332 2233345678899999999765 334557889999999999984 44 33333334
Q ss_pred CCccccEEEcc
Q 014560 382 LEPSLQALRLD 392 (422)
Q Consensus 382 ~~~~L~~l~l~ 392 (422)
+ |++++..+.
T Consensus 451 l-p~i~v~a~~ 460 (483)
T KOG4341|consen 451 L-PNIKVHAYF 460 (483)
T ss_pred C-ccceehhhc
Confidence 4 777665544
No 62
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=2.7e-06 Score=71.69 Aligned_cols=199 Identities=22% Similarity=0.265 Sum_probs=125.9
Q ss_pred ccccccceeeccCCCCC---CCCcccccCCCccEEeCCCCccccCCccc-cCCCCCcEEEecCCcCCC-CChHHHhcCCC
Q 014560 193 RLSVTSKELSLEGMNLS---AIPSEIWEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIKD-WPDAILTSLSS 267 (422)
Q Consensus 193 ~~~~~l~~l~l~~~~~~---~~~~~~~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~ 267 (422)
..+..++.+++..|.+. .+...+.+++.++.|+++.|.+..-...+ ....+|+.+.+.+..+.= .....+..+|+
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 33467788888887665 45555667888999999988776532333 356788888887765432 11223466788
Q ss_pred CCEEECCCCCCCcC--CCCCCCC-CCCccEEEccCCcCCCCC--CCCCCCCccCceEEeCCCcCccCCc--ccccCCCCc
Q 014560 268 LSCLKLDNNPLRQV--PSDGFKD-IPMLQILDLSYNIASLPE--NPPFSSLPHLQELYLRRMQLREAPT--DILRLQQLR 340 (422)
Q Consensus 268 L~~L~l~~~~~~~~--~~~~~~~-~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~l~~--~~~~~~~L~ 340 (422)
++++.++.|...++ .++.... -+.+..+++.+|...... ...-..+|++..+-+..|.+..... .....|.+.
T Consensus 148 vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~ 227 (418)
T KOG2982|consen 148 VTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLS 227 (418)
T ss_pred hhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcch
Confidence 88888888855542 2222222 246777777766332110 1112346788888888887764432 244567777
Q ss_pred EEECCCCCCcccC--ccCcCCCCCCEEeCCCCCCcccCCc-------cccCCccccEEEcc
Q 014560 341 ILDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPPE-------LGLLEPSLQALRLD 392 (422)
Q Consensus 341 ~l~l~~n~l~~l~--~~~~~~~~L~~L~l~~n~l~~~~~~-------~~~~~~~L~~l~l~ 392 (422)
-|+++.++|.... +.+..++.|.-|.++++.+..-..+ ++.+ +++++|+=+
T Consensus 228 ~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL-~~v~vLNGs 287 (418)
T KOG2982|consen 228 CLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARL-TKVQVLNGS 287 (418)
T ss_pred hhhhcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeec-cceEEecCc
Confidence 8899999888553 4478889999999999987532221 3334 666666543
No 63
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.78 E-value=0.00049 Score=62.45 Aligned_cols=153 Identities=17% Similarity=0.201 Sum_probs=96.2
Q ss_pred cCCCccEEeCCCCccccCCccccCCCCCcEEEecCC-cCCCCChHHHhcCCCCCEEECCCC-CCCcCCCCCCCCCCCccE
Q 014560 217 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNN-PLRQVPSDGFKDIPMLQI 294 (422)
Q Consensus 217 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~ 294 (422)
.+.+++.|++++|.++.+|. -.++|++|.+.+| .+..++.. + .++|+.|++++| .+..+| +.|+.
T Consensus 50 ~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~-L--P~nLe~L~Ls~Cs~L~sLP-------~sLe~ 116 (426)
T PRK15386 50 EARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGS-I--PEGLEKLTVCHCPEISGLP-------ESVRS 116 (426)
T ss_pred HhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCch-h--hhhhhheEccCcccccccc-------cccce
Confidence 35789999999999988872 2357999999987 45445432 2 368999999987 444332 45778
Q ss_pred EEccCCcCCCCCCCCCCCC-ccCceEEeCCCc-C--ccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCC
Q 014560 295 LDLSYNIASLPENPPFSSL-PHLQELYLRRMQ-L--REAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDN 370 (422)
Q Consensus 295 l~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~-i--~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n 370 (422)
|++.++.... +..+ ++|+.|.+.++. . ..++.. -.++|+.|++++|....+|..+. .+|+.|.++.+
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~LP--~SLk~L~ls~n 187 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKLP--ESLQSITLHIE 187 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCccccc--ccCcEEEeccc
Confidence 8876554332 2333 367777775432 1 122211 23688999999888776666554 58888888876
Q ss_pred CCc--ccCCccccCCccccEEEccCC
Q 014560 371 NIS--ALPPELGLLEPSLQALRLDGN 394 (422)
Q Consensus 371 ~l~--~~~~~~~~~~~~L~~l~l~~n 394 (422)
... .++.+... +++ .|++.+|
T Consensus 188 ~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 188 QKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred ccccccCcccccc--ccc-Eechhhh
Confidence 432 22222221 445 6666655
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.66 E-value=2.5e-05 Score=76.63 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=50.9
Q ss_pred CCccEEeCCCCccc-c-CCccc-cCCCCCcEEEecCCcCCCCC-hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccE
Q 014560 219 GEITKLDLSRNSIQ-E-LPPEL-SSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 294 (422)
Q Consensus 219 ~~L~~L~l~~~~l~-~-~~~~~-~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 294 (422)
.+|+.|+++|...- . -+..+ ..+|+|+.|.+.+-.+.... ......+|+|..||++++.++.+ .+++++++|+.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 46667777664321 1 11111 24566666666665443322 12234566666666666666555 23555666666
Q ss_pred EEccCCcCCC-CCCCCCCCCccCceEEeCCC
Q 014560 295 LDLSYNIASL-PENPPFSSLPHLQELYLRRM 324 (422)
Q Consensus 295 l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~ 324 (422)
|.+.+-.+.. .....+-.+.+|+.||++..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~ 230 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRD 230 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence 6665543332 11112334455555555543
No 65
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.20 E-value=0.0001 Score=61.43 Aligned_cols=85 Identities=21% Similarity=0.262 Sum_probs=38.4
Q ss_pred CCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCC--CCCc-CCCCCCCCCCCccEEEccCCcCCCCCC-CCCCCCcc
Q 014560 240 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN--PLRQ-VPSDGFKDIPMLQILDLSYNIASLPEN-PPFSSLPH 315 (422)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~-~~~~~~~~ 315 (422)
....|+.+.+.++.++.+.. +..+++|+.|.++.| .+.. +..- ...+|+|+.+.+++|.++.+.. ..+..+.+
T Consensus 41 ~~~~le~ls~~n~gltt~~~--~P~Lp~LkkL~lsdn~~~~~~~l~vl-~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTN--FPKLPKLKKLELSDNYRRVSGGLEVL-AEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccchhhhhhhccceeeccc--CCCcchhhhhcccCCcccccccceeh-hhhCCceeEEeecCCccccccccchhhhhcc
Confidence 34455555555555544432 344556666666655 2221 1111 1233555555555555543211 12333444
Q ss_pred CceEEeCCCcCc
Q 014560 316 LQELYLRRMQLR 327 (422)
Q Consensus 316 L~~L~l~~~~i~ 327 (422)
|..|++.+|..+
T Consensus 118 L~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 118 LKSLDLFNCSVT 129 (260)
T ss_pred hhhhhcccCCcc
Confidence 445555544433
No 66
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.14 E-value=2.8e-05 Score=65.12 Aligned_cols=74 Identities=26% Similarity=0.293 Sum_probs=38.8
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCC--CCccCCCCCEEEcCCC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS--SISGCCSLAEFYMGNN 79 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~--~~~~~~~L~~L~l~~~ 79 (422)
.|++=||.+++|.- ..+|+.|++|.|+-|.|+++. .+..|++|+.|.|..|.|..+.+ .+.++++|+.|-|..|
T Consensus 23 KLNcwg~~L~DIsi--c~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~EN 98 (388)
T KOG2123|consen 23 KLNCWGCGLDDISI--CEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDEN 98 (388)
T ss_pred hhcccCCCccHHHH--HHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccC
Confidence 34444555555544 555556666666555555542 34555555555555555554422 2355555555555444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.13 E-value=0.00023 Score=59.34 Aligned_cols=87 Identities=21% Similarity=0.290 Sum_probs=61.1
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCC--ccc-cCCCCCccCCCCCEEEcCCCcCccCc--hhhhCCCC
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQN--RIL-SIPSSISGCCSLAEFYMGNNALSALP--AELGKLSK 93 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~--~~~-~l~~~~~~~~~L~~L~l~~~~i~~l~--~~l~~~~~ 93 (422)
...+..|+.|++.+..++++. .+-.+++|++|.++.| ++. .++.....+++|+++++++|.+..+. ..+..+.+
T Consensus 39 ~d~~~~le~ls~~n~gltt~~-~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTLT-NFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred cccccchhhhhhhccceeecc-cCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 344566777777776665542 3446789999999999 444 44444566799999999999877431 23567788
Q ss_pred CcEEEccCCcccc
Q 014560 94 LGTLDLHSNQLKE 106 (422)
Q Consensus 94 L~~L~l~~~~~~~ 106 (422)
|..|++.+|..+.
T Consensus 118 L~~Ldl~n~~~~~ 130 (260)
T KOG2739|consen 118 LKSLDLFNCSVTN 130 (260)
T ss_pred hhhhhcccCCccc
Confidence 8999998887664
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.07 E-value=2.5e-05 Score=65.40 Aligned_cols=83 Identities=25% Similarity=0.316 Sum_probs=69.3
Q ss_pred hcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCch--hhhCCCCCcEEE
Q 014560 21 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA--ELGKLSKLGTLD 98 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~--~l~~~~~L~~L~ 98 (422)
.+.+.+.|++-+|.+..+. ....++-|+.|.|+-|.|+.+ ..+..|++|++|+|..|.|..+.+ -+.++++|+.|.
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW 94 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW 94 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence 4568889999999998774 345789999999999999998 568999999999999999987743 367789999999
Q ss_pred ccCCccc
Q 014560 99 LHSNQLK 105 (422)
Q Consensus 99 l~~~~~~ 105 (422)
|..|...
T Consensus 95 L~ENPCc 101 (388)
T KOG2123|consen 95 LDENPCC 101 (388)
T ss_pred hccCCcc
Confidence 8877654
No 69
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.30 E-value=0.0015 Score=32.26 Aligned_cols=18 Identities=56% Similarity=0.663 Sum_probs=8.1
Q ss_pred CCeEeccCCccccCCCCC
Q 014560 48 LIRLDLHQNRILSIPSSI 65 (422)
Q Consensus 48 L~~L~l~~~~~~~l~~~~ 65 (422)
|++|++++|.++.+|+.|
T Consensus 2 L~~Ldls~n~l~~ip~~~ 19 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSF 19 (22)
T ss_dssp ESEEEETSSEESEEGTTT
T ss_pred ccEEECCCCcCEeCChhh
Confidence 444444444444444333
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.18 E-value=0.0019 Score=31.92 Aligned_cols=20 Identities=30% Similarity=0.606 Sum_probs=14.4
Q ss_pred CceeeccCCcceecChhHHhh
Q 014560 1 MSKLDVEGNKLTVLSNNLIAS 21 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~ 21 (422)
|++||+++|+|+.+|.. |.+
T Consensus 2 L~~Ldls~n~l~~ip~~-~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSS-FSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTT-TTT
T ss_pred ccEEECCCCcCEeCChh-hcC
Confidence 56788888887777776 554
No 71
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=96.07 E-value=0.00015 Score=59.27 Aligned_cols=95 Identities=24% Similarity=0.232 Sum_probs=79.5
Q ss_pred ceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhC
Q 014560 11 LTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGK 90 (422)
Q Consensus 11 i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~ 90 (422)
++.||...+......++|+++.|.+-.+...|..++.|..|+++.+.+..+|..+.....++.+++..|..+..|.++..
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k 109 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKK 109 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccc
Confidence 55677777778888888999888887777778888888899999888888888888888888888888888888888888
Q ss_pred CCCCcEEEccCCccc
Q 014560 91 LSKLGTLDLHSNQLK 105 (422)
Q Consensus 91 ~~~L~~L~l~~~~~~ 105 (422)
.+++++++.-.+.+.
T Consensus 110 ~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 110 EPHPKKNEQKKTEFF 124 (326)
T ss_pred cCCcchhhhccCcch
Confidence 899998888777644
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.27 E-value=0.012 Score=26.87 Aligned_cols=12 Identities=67% Similarity=0.869 Sum_probs=3.6
Q ss_pred CcEEECCCCCCc
Q 014560 339 LRILDLSQNSLQ 350 (422)
Q Consensus 339 L~~l~l~~n~l~ 350 (422)
|+.|++++|+++
T Consensus 3 L~~L~l~~n~L~ 14 (17)
T PF13504_consen 3 LRTLDLSNNRLT 14 (17)
T ss_dssp -SEEEETSS--S
T ss_pred cCEEECCCCCCC
Confidence 333444444333
No 73
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.22 E-value=0.0016 Score=62.56 Aligned_cols=108 Identities=28% Similarity=0.219 Sum_probs=58.7
Q ss_pred ccccceeeccCCCCC-C--CCcccccCCCccEEeCCCC-c-cccC----CccccCCCCCcEEEecCCc-CCCCChHHHh-
Q 014560 195 SVTSKELSLEGMNLS-A--IPSEIWEAGEITKLDLSRN-S-IQEL----PPELSSCASLQTLILSRNK-IKDWPDAILT- 263 (422)
Q Consensus 195 ~~~l~~l~l~~~~~~-~--~~~~~~~~~~L~~L~l~~~-~-l~~~----~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~- 263 (422)
...++.+.+.++... . +.......+.|+.|+++++ . +... ......+.+|+.++++.+. +++.....+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 456666666554322 2 3344455677788877763 1 1111 1123456777777777775 5554443333
Q ss_pred cCCCCCEEECCCCC-CCcCCC-CCCCCCCCccEEEccCCcC
Q 014560 264 SLSSLSCLKLDNNP-LRQVPS-DGFKDIPMLQILDLSYNIA 302 (422)
Q Consensus 264 ~~~~L~~L~l~~~~-~~~~~~-~~~~~~~~L~~l~l~~~~~ 302 (422)
.|++|+.|.+..|. ++...- .....++.|++++++++..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 37778877766554 332111 1123567777777776643
No 74
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.21 E-value=0.011 Score=27.02 Aligned_cols=15 Identities=47% Similarity=0.782 Sum_probs=5.7
Q ss_pred CCCEEeCCCCCCccc
Q 014560 361 SLTELDLSDNNISAL 375 (422)
Q Consensus 361 ~L~~L~l~~n~l~~~ 375 (422)
+|+.|++++|+++++
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 344555555544443
No 75
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=95.12 E-value=0.0018 Score=53.13 Aligned_cols=80 Identities=21% Similarity=0.179 Sum_probs=74.1
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
+.||++.|++...... |+.+..+..|+++.+.+..+|..+.....++.++...|..+..|.++...+.++.++...+.+
T Consensus 45 tvld~~s~r~vn~~~n-~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~k~~~~ 123 (326)
T KOG0473|consen 45 TVLDLSSNRLVNLGKN-FSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKKNEQKKTEF 123 (326)
T ss_pred eeehhhhhHHHhhccc-hHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcchhhhccCcc
Confidence 5789999999988888 999999999999999999999999999999999999999999999999999999999988875
Q ss_pred c
Q 014560 82 S 82 (422)
Q Consensus 82 ~ 82 (422)
.
T Consensus 124 ~ 124 (326)
T KOG0473|consen 124 F 124 (326)
T ss_pred h
Confidence 4
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=94.73 E-value=0.031 Score=28.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.0
Q ss_pred ccccEEEccCCCCCccchHHHh
Q 014560 384 PSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 384 ~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
++|+.|++++|.++.+++.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777775
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=94.73 E-value=0.031 Score=28.84 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=17.0
Q ss_pred ccccEEEccCCCCCccchHHHh
Q 014560 384 PSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 384 ~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
++|+.|++++|.++.+++.+|+
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677888888888888777775
No 78
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=94.33 E-value=0.0046 Score=59.34 Aligned_cols=156 Identities=24% Similarity=0.213 Sum_probs=84.5
Q ss_pred CCCccEEeCCCC-cccc--CCccccCCCCCcEEEecCC--cCCCCC---hHHHhcCCCCCEEECCCCC-CCcCCCCCCC-
Q 014560 218 AGEITKLDLSRN-SIQE--LPPELSSCASLQTLILSRN--KIKDWP---DAILTSLSSLSCLKLDNNP-LRQVPSDGFK- 287 (422)
Q Consensus 218 ~~~L~~L~l~~~-~l~~--~~~~~~~~~~L~~L~l~~~--~~~~~~---~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~- 287 (422)
.+.++.+.+.++ .+.. +.+....++.|+.++++++ .....+ ......+++|+.++++.+. ++...-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 567777777776 3333 3344567788888888763 122111 1233556788888887776 4443322222
Q ss_pred CCCCccEEEccCCc-CCCCCC-CCCCCCccCceEEeCCCcCc---cCCcccccCCCCcEEECCCCC----Cc--------
Q 014560 288 DIPMLQILDLSYNI-ASLPEN-PPFSSLPHLQELYLRRMQLR---EAPTDILRLQQLRILDLSQNS----LQ-------- 350 (422)
Q Consensus 288 ~~~~L~~l~l~~~~-~~~~~~-~~~~~~~~L~~L~l~~~~i~---~l~~~~~~~~~L~~l~l~~n~----l~-------- 350 (422)
.|++|+.+.+.++. +++... .....++.|++|+++++... .+.....+|++++.+.+.... ++
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 27788888876665 333221 22355777888888877432 122223345555554443332 11
Q ss_pred c-----c-CccCcCCCCCCEEeCCCCCCc
Q 014560 351 S-----I-PEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 351 ~-----l-~~~~~~~~~L~~L~l~~n~l~ 373 (422)
. + ...+.+|+++..+.+..+..+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~~~ 375 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCGIS 375 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhhcc
Confidence 0 0 112456677777777666543
No 79
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.94 E-value=0.048 Score=28.08 Aligned_cols=22 Identities=50% Similarity=0.705 Sum_probs=15.1
Q ss_pred CCCCEEeCCCCCCcccCCcccc
Q 014560 360 TSLTELDLSDNNISALPPELGL 381 (422)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~ 381 (422)
++|+.|++++|.|+.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777777777777766553
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.94 E-value=0.048 Score=28.08 Aligned_cols=22 Identities=50% Similarity=0.705 Sum_probs=15.1
Q ss_pred CCCCEEeCCCCCCcccCCcccc
Q 014560 360 TSLTELDLSDNNISALPPELGL 381 (422)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~ 381 (422)
++|+.|++++|.|+.+|...+.
T Consensus 2 ~~L~~L~L~~N~l~~lp~~~f~ 23 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPGAFQ 23 (26)
T ss_pred CCCCEEECCCCcCCcCCHHHcc
Confidence 5677777777777777766553
No 81
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.52 E-value=0.003 Score=59.49 Aligned_cols=79 Identities=20% Similarity=0.191 Sum_probs=36.1
Q ss_pred eeeccCCcceecC----hhHHhhcccccceecccccccCCc-----hhhhcc-ccCCeEeccCCccc-----cCCCCCcc
Q 014560 3 KLDVEGNKLTVLS----NNLIASWTMLTELIASKNLLNGMP-----ETIGSL-SRLIRLDLHQNRIL-----SIPSSISG 67 (422)
Q Consensus 3 ~L~ls~~~i~~i~----~~~~~~~~~L~~L~l~~~~i~~~~-----~~~~~~-~~L~~L~l~~~~~~-----~l~~~~~~ 67 (422)
+|.|.+|.+..-. +.++.....|..|++++|.++... ..+... ..|++|++..|.++ .+.+.+..
T Consensus 91 ~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~ 170 (478)
T KOG4308|consen 91 HLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEK 170 (478)
T ss_pred HhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhc
Confidence 4555555555322 223334455666666666654211 112221 34455555555444 22233334
Q ss_pred CCCCCEEEcCCCcC
Q 014560 68 CCSLAEFYMGNNAL 81 (422)
Q Consensus 68 ~~~L~~L~l~~~~i 81 (422)
...+++++++.|.+
T Consensus 171 ~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 171 NEHLTELDLSLNGL 184 (478)
T ss_pred ccchhHHHHHhccc
Confidence 55555555555544
No 82
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.47 E-value=0.00067 Score=63.78 Aligned_cols=126 Identities=27% Similarity=0.294 Sum_probs=84.5
Q ss_pred ccceecccccccC-----CchhhhccccCCeEeccCCcccc-----CCCCCcc-CCCCCEEEcCCCcCc-----cCchhh
Q 014560 25 LTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILS-----IPSSISG-CCSLAEFYMGNNALS-----ALPAEL 88 (422)
Q Consensus 25 L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~~~~-----l~~~~~~-~~~L~~L~l~~~~i~-----~l~~~l 88 (422)
+..+.+.+|.+.. +...+.....|..|++++|.+.. +-..+.. -..++.|.+..|.++ .+.+.+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 8888999998864 34556788999999999998761 1122222 256777888888776 456667
Q ss_pred hCCCCCcEEEccCCccc-----ccccccc-----cceecEEEcCCCCCCC-----CCccccccCC-ccEEEcCCCccc
Q 014560 89 GKLSKLGTLDLHSNQLK-----EYCVEAC-----QLRLSVLDLSNNSLSG-----LPPEIGKMTT-LRKLLLTGNPLR 150 (422)
Q Consensus 89 ~~~~~L~~L~l~~~~~~-----~l~~~~~-----~~~L~~L~l~~~~~~~-----~~~~~~~l~~-L~~L~l~~~~~~ 150 (422)
.....++.++++.|.+. .++.... ...++.|++.+|.++. +...+...+. +..+++..|.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 77889999999988764 1222222 2238889999988765 2223444455 666888777653
No 83
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.29 E-value=0.14 Score=25.75 Aligned_cols=18 Identities=28% Similarity=0.479 Sum_probs=10.5
Q ss_pred ccccEEEccCCCCCccch
Q 014560 384 PSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 384 ~~L~~l~l~~n~~~~i~~ 401 (422)
++|++|++++|++.+...
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 677777777777654433
No 84
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.95 E-value=0.049 Score=44.05 Aligned_cols=76 Identities=20% Similarity=0.134 Sum_probs=51.3
Q ss_pred cccceecccccccCC-chhhhccccCCeEeccCCccc------cCCCCCccCCCCCEEEcCCC-cCccC-chhhhCCCCC
Q 014560 24 MLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL------SIPSSISGCCSLAEFYMGNN-ALSAL-PAELGKLSKL 94 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~------~l~~~~~~~~~L~~L~l~~~-~i~~l-~~~l~~~~~L 94 (422)
.++.++-+++.|... -+.+.+++.++.|.+.+|.-- .+. .-.++|+.|++++| .|++- -..+..+++|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~---~~~~~L~~L~lsgC~rIT~~GL~~L~~lknL 178 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLG---GLAPSLQDLDLSGCPRITDGGLACLLKLKNL 178 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhc---ccccchheeeccCCCeechhHHHHHHHhhhh
Confidence 466777777777544 366777777888888777422 221 24578888888866 67733 3567788888
Q ss_pred cEEEccCC
Q 014560 95 GTLDLHSN 102 (422)
Q Consensus 95 ~~L~l~~~ 102 (422)
+.|.+++=
T Consensus 179 r~L~l~~l 186 (221)
T KOG3864|consen 179 RRLHLYDL 186 (221)
T ss_pred HHHHhcCc
Confidence 88887654
No 85
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.62 E-value=0.12 Score=41.85 Aligned_cols=34 Identities=15% Similarity=0.126 Sum_probs=17.3
Q ss_pred CccEEEccCCcCCCCCCCCCCCCccCceEEeCCC
Q 014560 291 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 324 (422)
Q Consensus 291 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 324 (422)
.++.++-+++.+.......+..++.++.|.+.+|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c 135 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC 135 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence 3455555555544444344455555555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=85.56 E-value=0.61 Score=23.90 Aligned_cols=17 Identities=47% Similarity=0.770 Sum_probs=9.3
Q ss_pred CCcEEECCCCCCcccCc
Q 014560 338 QLRILDLSQNSLQSIPE 354 (422)
Q Consensus 338 ~L~~l~l~~n~l~~l~~ 354 (422)
+|+.|++++|.++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555554
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=81.73 E-value=1.4 Score=23.10 Aligned_cols=19 Identities=37% Similarity=0.459 Sum_probs=13.1
Q ss_pred ccccEEEccCCCCCccchH
Q 014560 384 PSLQALRLDGNPLRSIRRT 402 (422)
Q Consensus 384 ~~L~~l~l~~n~~~~i~~~ 402 (422)
++|++|++++|.+..-...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~ 20 (28)
T smart00368 2 PSLRELDLSNNKLGDEGAR 20 (28)
T ss_pred CccCEEECCCCCCCHHHHH
Confidence 5788888888887744333
No 88
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=79.32 E-value=1.8 Score=22.21 Aligned_cols=14 Identities=57% Similarity=0.774 Sum_probs=7.3
Q ss_pred CCCEEeCCCCCCcc
Q 014560 361 SLTELDLSDNNISA 374 (422)
Q Consensus 361 ~L~~L~l~~n~l~~ 374 (422)
+|+.|++++|+|+.
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 45555555555543
No 89
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=75.14 E-value=2.5 Score=40.05 Aligned_cols=35 Identities=29% Similarity=0.338 Sum_probs=16.8
Q ss_pred CccCceEEeCCCcCccCC---cccccCCCCcEEECCCC
Q 014560 313 LPHLQELYLRRMQLREAP---TDILRLQQLRILDLSQN 347 (422)
Q Consensus 313 ~~~L~~L~l~~~~i~~l~---~~~~~~~~L~~l~l~~n 347 (422)
.|.+..+++++|++..+. .-....|+|..|+|++|
T Consensus 217 ~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 217 FPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 455555555555544321 11223455555555555
No 90
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=69.42 E-value=3.7 Score=20.90 Aligned_cols=12 Identities=42% Similarity=0.753 Sum_probs=7.8
Q ss_pred ccccEEEccCCC
Q 014560 384 PSLQALRLDGNP 395 (422)
Q Consensus 384 ~~L~~l~l~~n~ 395 (422)
++|+.|++++|+
T Consensus 2 ~~L~~L~l~~C~ 13 (26)
T smart00367 2 PNLRELDLSGCT 13 (26)
T ss_pred CCCCEeCCCCCC
Confidence 566666666664
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=54.15 E-value=4.2 Score=38.61 Aligned_cols=64 Identities=25% Similarity=0.218 Sum_probs=42.6
Q ss_pred CCCCCccEEEccCCcCCCCCCC--CCCCCccCceEEeCCC--cCccCCc-ccccCCCCcEEECCCCCCc
Q 014560 287 KDIPMLQILDLSYNIASLPENP--PFSSLPHLQELYLRRM--QLREAPT-DILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 287 ~~~~~L~~l~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~--~i~~l~~-~~~~~~~L~~l~l~~n~l~ 350 (422)
.+.+.+..+++++|++...... .-...|+|+.|+|++| .+...++ .-.+...|++|-+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3567888899999977654331 2245689999999998 4442222 1223467788888888765
No 92
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=51.75 E-value=1.1e+02 Score=29.14 Aligned_cols=16 Identities=31% Similarity=0.370 Sum_probs=8.9
Q ss_pred CCCCcEEEecCCcCCC
Q 014560 241 CASLQTLILSRNKIKD 256 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~ 256 (422)
-+.+.+++++++...+
T Consensus 439 tqtl~kldisgn~mgd 454 (553)
T KOG4242|consen 439 TQTLAKLDISGNGMGD 454 (553)
T ss_pred CcccccccccCCCccc
Confidence 3455666666665444
No 93
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=38.96 E-value=17 Score=41.98 Aligned_cols=32 Identities=25% Similarity=0.397 Sum_probs=29.9
Q ss_pred eccCCcceecChhHHhhcccccceeccccccc
Q 014560 5 DVEGNKLTVLSNNLIASWTMLTELIASKNLLN 36 (422)
Q Consensus 5 ~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~ 36 (422)
||++|+|..|+..+|..+++|+.|+|++|.+.
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~ 32 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFE 32 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCccc
Confidence 68999999999999999999999999998775
No 94
>PF05725 FNIP: FNIP Repeat; InterPro: IPR008615 This repeat is approximately 22 residues long and is only found in Dictyostelium discoideum (Slime mould). It appears to be related to IPR001611 from INTERPRO. The alignment consists of two tandem repeats. It is termed the FNIP repeat after the pattern of conserved residues.
Probab=21.51 E-value=1.2e+02 Score=17.75 Aligned_cols=6 Identities=33% Similarity=0.368 Sum_probs=2.4
Q ss_pred CcEEEc
Q 014560 94 LGTLDL 99 (422)
Q Consensus 94 L~~L~l 99 (422)
+++|.+
T Consensus 14 l~~L~~ 19 (44)
T PF05725_consen 14 LKSLIF 19 (44)
T ss_pred CeEEEE
Confidence 333433
Done!