Query 014560
Match_columns 422
No_of_seqs 198 out of 2819
Neff 11.0
Searched_HMMs 29240
Date Mon Mar 25 13:47:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014560.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014560hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4eco_A Uncharacterized protein 100.0 9E-41 3.1E-45 326.9 28.1 351 10-402 194-605 (636)
2 4eco_A Uncharacterized protein 100.0 6.2E-41 2.1E-45 328.1 25.1 364 2-404 84-586 (636)
3 3t6q_A CD180 antigen; protein- 100.0 3.7E-39 1.3E-43 315.7 32.0 405 1-406 35-498 (606)
4 4ecn_A Leucine-rich repeat pro 100.0 2.9E-39 9.8E-44 321.6 30.7 357 8-406 434-849 (876)
5 3vq2_A TLR4, TOLL-like recepto 100.0 5.8E-39 2E-43 314.3 30.3 381 1-398 58-559 (606)
6 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-39 8.9E-44 316.7 27.3 397 1-402 34-539 (606)
7 3t6q_A CD180 antigen; protein- 100.0 3.5E-38 1.2E-42 308.8 33.9 393 1-406 59-545 (606)
8 2z63_A TOLL-like receptor 4, v 100.0 2E-39 6.9E-44 315.4 23.2 398 1-399 30-533 (570)
9 4ecn_A Leucine-rich repeat pro 100.0 9.4E-39 3.2E-43 317.9 27.8 364 2-404 326-826 (876)
10 3rgz_A Protein brassinosteroid 100.0 2.2E-38 7.5E-43 317.0 25.7 393 1-405 153-560 (768)
11 1ziw_A TOLL-like receptor 3; i 100.0 8.1E-37 2.8E-41 303.0 36.6 154 1-154 27-188 (680)
12 1ziw_A TOLL-like receptor 3; i 100.0 5.5E-37 1.9E-41 304.2 34.8 405 1-405 51-605 (680)
13 3rgz_A Protein brassinosteroid 100.0 6.5E-38 2.2E-42 313.6 27.5 384 1-399 202-695 (768)
14 1o6v_A Internalin A; bacterial 100.0 1.3E-36 4.5E-41 287.5 31.4 346 1-402 48-393 (466)
15 2z7x_B TOLL-like receptor 1, v 100.0 3.5E-37 1.2E-41 296.1 26.9 390 1-398 23-482 (520)
16 2z81_A CD282 antigen, TOLL-lik 100.0 2.7E-37 9.2E-42 299.0 24.6 395 1-397 28-510 (549)
17 3v47_A TOLL-like receptor 5B a 100.0 1.1E-36 3.8E-41 287.8 24.6 361 2-399 13-410 (455)
18 3j0a_A TOLL-like receptor 5; m 100.0 8.8E-37 3E-41 308.5 25.4 303 1-304 26-376 (844)
19 2z81_A CD282 antigen, TOLL-lik 100.0 5.6E-36 1.9E-40 289.7 28.9 371 1-373 52-510 (549)
20 2z63_A TOLL-like receptor 4, v 100.0 4.5E-36 1.5E-40 291.8 26.4 395 2-406 10-516 (570)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.8E-35 6.3E-40 286.3 28.8 380 3-398 35-511 (562)
22 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-36 1E-40 289.6 21.7 389 2-405 3-465 (520)
23 4fmz_A Internalin; leucine ric 100.0 1.3E-34 4.6E-39 263.6 28.9 306 19-397 40-346 (347)
24 4g8a_A TOLL-like receptor 4; l 100.0 2.1E-34 7.2E-39 283.7 30.2 411 1-417 54-594 (635)
25 3j0a_A TOLL-like receptor 5; m 100.0 4.6E-35 1.6E-39 296.0 25.6 400 1-404 50-546 (844)
26 4fmz_A Internalin; leucine ric 100.0 3.8E-34 1.3E-38 260.6 28.3 299 1-374 46-347 (347)
27 1o6v_A Internalin A; bacterial 100.0 3.8E-34 1.3E-38 270.6 28.9 325 1-379 70-394 (466)
28 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 3.9E-34 1.3E-38 277.1 26.4 376 21-405 29-494 (562)
29 1jl5_A Outer protein YOPM; leu 100.0 1.3E-33 4.6E-38 264.6 29.1 345 1-398 13-371 (454)
30 3o6n_A APL1; leucine-rich repe 100.0 1.7E-33 5.8E-38 260.3 26.8 304 21-397 43-352 (390)
31 1jl5_A Outer protein YOPM; leu 100.0 1.1E-32 3.7E-37 258.4 31.3 322 1-398 73-410 (454)
32 3v47_A TOLL-like receptor 5B a 100.0 4.7E-33 1.6E-37 262.9 26.7 345 25-406 12-393 (455)
33 3o6n_A APL1; leucine-rich repe 100.0 1.6E-33 5.3E-38 260.5 22.8 301 1-373 47-352 (390)
34 3bz5_A Internalin-J, INLJ; leu 100.0 6.3E-33 2.1E-37 260.2 23.4 298 19-375 38-354 (457)
35 3oja_B Anopheles plasmodium-re 100.0 2.1E-32 7.1E-37 266.3 27.0 303 22-373 50-358 (597)
36 2id5_A Lingo-1, leucine rich r 100.0 1.1E-32 3.8E-37 261.8 24.3 312 3-397 15-333 (477)
37 3bz5_A Internalin-J, INLJ; leu 100.0 9.2E-32 3.1E-36 252.3 28.8 326 1-397 44-387 (457)
38 2id5_A Lingo-1, leucine rich r 100.0 2.9E-32 1E-36 258.9 25.1 292 1-350 34-333 (477)
39 3oja_B Anopheles plasmodium-re 100.0 3.3E-32 1.1E-36 264.9 23.2 305 44-397 49-358 (597)
40 4g8a_A TOLL-like receptor 4; l 100.0 3.4E-31 1.2E-35 260.9 28.9 395 3-406 35-564 (635)
41 2ft3_A Biglycan; proteoglycan, 100.0 6.6E-31 2.3E-35 237.4 24.2 300 10-395 15-331 (332)
42 1xku_A Decorin; proteoglycan, 100.0 6.3E-30 2.1E-34 230.9 26.3 287 24-395 32-330 (330)
43 1xku_A Decorin; proteoglycan, 100.0 1.6E-29 5.5E-34 228.2 26.6 274 46-406 31-317 (330)
44 1z7x_W Ribonuclease inhibitor; 100.0 1.8E-33 6E-38 266.3 0.5 368 1-398 5-441 (461)
45 2ft3_A Biglycan; proteoglycan, 100.0 3.9E-29 1.3E-33 225.8 21.0 285 1-370 35-330 (332)
46 3g06_A SSPH2 (leucine-rich rep 100.0 1.7E-26 5.8E-31 222.8 31.0 257 24-373 41-297 (622)
47 3g06_A SSPH2 (leucine-rich rep 100.0 1.1E-26 3.7E-31 224.2 28.8 158 220-399 142-299 (622)
48 1z7x_W Ribonuclease inhibitor; 99.9 1.4E-30 4.9E-35 246.3 -4.4 351 23-405 3-419 (461)
49 2z80_A TOLL-like receptor 2, v 99.9 6E-27 2.1E-31 213.3 15.9 277 43-400 28-317 (353)
50 2z66_A Variable lymphocyte rec 99.9 4.3E-26 1.5E-30 203.5 20.1 182 217-398 76-262 (306)
51 2z80_A TOLL-like receptor 2, v 99.9 3E-26 1E-30 208.7 18.5 272 21-373 29-314 (353)
52 2z66_A Variable lymphocyte rec 99.9 8.4E-26 2.9E-30 201.6 20.3 240 26-325 10-259 (306)
53 3zyi_A Leucine-rich repeat-con 99.9 3.8E-25 1.3E-29 208.2 25.5 197 215-419 119-319 (452)
54 1ogq_A PGIP-2, polygalacturona 99.9 2E-26 7E-31 205.8 15.8 244 46-371 50-302 (313)
55 1ogq_A PGIP-2, polygalacturona 99.9 1.1E-26 3.6E-31 207.6 13.8 242 23-325 50-302 (313)
56 4fcg_A Uncharacterized protein 99.9 4.7E-26 1.6E-30 204.6 17.5 224 22-304 80-315 (328)
57 3zyj_A Leucine-rich repeat-con 99.9 6.5E-25 2.2E-29 205.8 25.9 196 216-419 109-308 (440)
58 4fcg_A Uncharacterized protein 99.9 1.6E-25 5.5E-30 201.1 19.0 227 44-329 79-316 (328)
59 3zyi_A Leucine-rich repeat-con 99.9 1.2E-24 4E-29 204.8 22.2 241 25-326 56-302 (452)
60 1ozn_A Reticulon 4 receptor; N 99.9 3.8E-24 1.3E-28 188.8 22.4 203 196-398 32-239 (285)
61 3o53_A Protein LRIM1, AGAP0063 99.9 3.2E-26 1.1E-30 205.0 8.9 255 3-324 14-272 (317)
62 3zyj_A Leucine-rich repeat-con 99.9 4.8E-24 1.7E-28 199.9 23.3 109 217-326 183-291 (440)
63 3ogk_B Coronatine-insensitive 99.9 4.9E-27 1.7E-31 229.2 -1.4 374 20-405 109-534 (592)
64 2o6q_A Variable lymphocyte rec 99.9 4.5E-23 1.5E-27 180.3 23.4 201 197-399 17-220 (270)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-24 7.4E-29 193.2 13.6 171 218-397 79-250 (317)
66 1wwl_A Monocyte differentiatio 99.9 1.6E-24 5.6E-29 193.5 12.0 246 19-328 39-310 (312)
67 1wwl_A Monocyte differentiatio 99.9 6.5E-26 2.2E-30 202.6 2.7 178 218-399 120-311 (312)
68 1ozn_A Reticulon 4 receptor; N 99.9 1.4E-22 4.8E-27 178.7 22.2 205 199-406 14-223 (285)
69 3ogk_B Coronatine-insensitive 99.9 2.6E-25 8.8E-30 217.0 3.3 383 1-394 114-548 (592)
70 3oja_A Leucine-rich immune mol 99.9 3.8E-24 1.3E-28 202.4 10.4 234 44-368 32-270 (487)
71 3oja_A Leucine-rich immune mol 99.9 7.5E-24 2.6E-28 200.4 10.9 235 67-392 32-270 (487)
72 1p9a_G Platelet glycoprotein I 99.9 6.8E-22 2.3E-26 174.2 22.0 197 196-398 10-209 (290)
73 2z62_A TOLL-like receptor 4, v 99.9 2.8E-22 9.6E-27 175.9 19.0 203 196-398 28-238 (276)
74 2p1m_B Transport inhibitor res 99.9 4.4E-26 1.5E-30 222.6 -6.5 386 1-397 68-519 (594)
75 1p9a_G Platelet glycoprotein I 99.9 7.1E-22 2.4E-26 174.1 20.6 134 217-350 75-208 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 4.7E-22 1.6E-26 174.5 18.1 204 200-406 11-222 (276)
77 2o6q_A Variable lymphocyte rec 99.9 3.4E-21 1.2E-25 168.3 23.0 175 199-373 40-218 (270)
78 1h6u_A Internalin H; cell adhe 99.9 2.4E-21 8.3E-26 172.4 18.5 209 6-283 26-234 (308)
79 3m19_A Variable lymphocyte rec 99.9 9.8E-21 3.3E-25 163.5 21.3 177 221-399 16-194 (251)
80 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.5E-26 172.3 17.6 195 196-402 41-235 (308)
81 2p1m_B Transport inhibitor res 99.9 2E-24 7E-29 210.8 -3.5 385 3-400 47-497 (594)
82 2xwt_C Thyrotropin receptor; s 99.9 6.5E-22 2.2E-26 169.7 12.5 192 208-404 23-225 (239)
83 2xwt_C Thyrotropin receptor; s 99.9 2.3E-21 8E-26 166.2 13.9 195 196-395 31-237 (239)
84 3rfs_A Internalin B, repeat mo 99.9 2.7E-20 9.3E-25 162.7 20.7 182 215-399 37-220 (272)
85 3m19_A Variable lymphocyte rec 99.9 6.3E-20 2.1E-24 158.4 20.6 178 196-375 14-194 (251)
86 3rfs_A Internalin B, repeat mo 99.9 2.3E-20 7.8E-25 163.2 17.4 193 196-397 41-235 (272)
87 2ast_B S-phase kinase-associat 99.8 9.6E-22 3.3E-26 177.8 6.2 123 25-149 49-181 (336)
88 2ca6_A RAN GTPase-activating p 99.8 5.9E-23 2E-27 189.3 -2.0 168 214-400 117-319 (386)
89 2ca6_A RAN GTPase-activating p 99.8 4.2E-22 1.4E-26 183.5 1.4 234 19-305 28-318 (386)
90 3goz_A Leucine-rich repeat-con 99.8 3E-21 1E-25 176.1 6.8 107 3-109 2-126 (362)
91 3cvr_A Invasion plasmid antige 99.8 4.7E-19 1.6E-23 168.9 20.1 187 196-406 59-252 (571)
92 4glp_A Monocyte differentiatio 99.8 3.6E-20 1.2E-24 165.2 11.4 83 312-398 222-308 (310)
93 4glp_A Monocyte differentiatio 99.8 3.5E-20 1.2E-24 165.3 10.6 180 219-401 91-289 (310)
94 1h6t_A Internalin B; cell adhe 99.8 5.2E-19 1.8E-23 155.9 16.0 191 24-281 25-215 (291)
95 2ast_B S-phase kinase-associat 99.8 1.6E-20 5.4E-25 169.8 6.1 219 47-324 48-282 (336)
96 3cvr_A Invasion plasmid antige 99.8 3.8E-19 1.3E-23 169.6 15.5 191 18-263 49-251 (571)
97 1h6t_A Internalin B; cell adhe 99.8 3.9E-19 1.3E-23 156.7 14.4 171 218-399 45-215 (291)
98 3goz_A Leucine-rich repeat-con 99.8 1.8E-20 6.3E-25 170.9 4.8 249 97-399 3-299 (362)
99 4ay9_X Follicle-stimulating ho 99.8 3.1E-19 1E-23 161.9 12.6 106 2-110 12-122 (350)
100 4ay9_X Follicle-stimulating ho 99.8 5.4E-19 1.9E-23 160.3 13.8 207 198-406 11-224 (350)
101 2o6s_A Variable lymphocyte rec 99.8 2.7E-18 9.4E-23 143.7 14.9 177 198-382 9-188 (208)
102 1m9s_A Internalin B; cell inva 99.8 1E-18 3.4E-23 168.5 13.6 138 6-149 28-165 (605)
103 3e6j_A Variable lymphocyte rec 99.8 1.1E-17 3.7E-22 142.1 18.0 151 221-373 21-172 (229)
104 2o6s_A Variable lymphocyte rec 99.8 7.2E-18 2.5E-22 141.1 15.1 167 222-397 10-178 (208)
105 2xot_A Amphoterin-induced prot 99.8 2.2E-18 7.7E-23 156.9 12.8 175 222-398 21-203 (361)
106 1m9s_A Internalin B; cell inva 99.8 3E-18 1E-22 165.2 14.2 169 218-397 42-210 (605)
107 1xeu_A Internalin C; cellular 99.8 4.4E-18 1.5E-22 147.6 13.5 172 21-258 17-188 (263)
108 2v9t_B SLIT homolog 2 protein 99.8 2.4E-17 8.3E-22 138.9 16.7 150 222-397 14-165 (220)
109 1xeu_A Internalin C; cellular 99.8 2.4E-18 8.3E-23 149.2 10.7 171 197-378 20-190 (263)
110 3e6j_A Variable lymphocyte rec 99.8 3.3E-17 1.1E-21 139.0 17.1 155 243-400 20-175 (229)
111 4ezg_A Putative uncharacterize 99.8 3.3E-18 1.1E-22 141.8 10.2 150 218-397 43-194 (197)
112 2v9t_B SLIT homolog 2 protein 99.8 2.5E-17 8.5E-22 138.8 15.6 152 197-350 12-165 (220)
113 4fs7_A Uncharacterized protein 99.7 8.2E-17 2.8E-21 148.4 19.5 322 11-406 59-386 (394)
114 2v70_A SLIT-2, SLIT homolog 2 99.7 2.6E-17 8.8E-22 138.7 14.8 148 200-349 15-165 (220)
115 4ezg_A Putative uncharacterize 99.7 9.2E-18 3.1E-22 139.1 11.7 132 263-400 41-175 (197)
116 3sb4_A Hypothetical leucine ri 99.7 1.8E-17 6E-22 149.0 14.0 101 241-343 225-327 (329)
117 2xot_A Amphoterin-induced prot 99.7 1.4E-17 4.9E-22 151.6 13.0 175 197-373 19-202 (361)
118 4fdw_A Leucine rich hypothetic 99.7 2.4E-16 8.1E-21 144.6 19.1 262 19-350 109-383 (401)
119 2v70_A SLIT-2, SLIT homolog 2 99.7 1E-16 3.5E-21 135.1 13.9 150 222-373 14-166 (220)
120 3sb4_A Hypothetical leucine ri 99.7 5.2E-17 1.8E-21 146.0 12.5 123 241-366 201-327 (329)
121 4fs7_A Uncharacterized protein 99.7 3.7E-16 1.3E-20 144.0 18.0 313 1-389 73-393 (394)
122 4fdw_A Leucine rich hypothetic 99.7 1E-15 3.6E-20 140.4 20.4 259 68-396 112-382 (401)
123 4gt6_A Cell surface protein; l 99.7 1.7E-15 5.8E-20 139.6 21.3 133 11-147 51-192 (394)
124 1dce_A Protein (RAB geranylger 99.7 7E-18 2.4E-22 161.7 0.9 193 20-273 346-567 (567)
125 1dce_A Protein (RAB geranylger 99.7 2E-18 6.8E-23 165.5 -4.3 180 43-283 346-550 (567)
126 2ell_A Acidic leucine-rich nuc 99.6 7.4E-16 2.5E-20 124.2 9.6 132 22-154 23-164 (168)
127 2ell_A Acidic leucine-rich nuc 99.6 8.4E-16 2.9E-20 123.8 9.9 132 266-401 24-164 (168)
128 4gt6_A Cell surface protein; l 99.6 2.9E-14 9.9E-19 131.3 21.0 313 35-394 51-388 (394)
129 2je0_A Acidic leucine-rich nuc 99.6 3.9E-15 1.3E-19 117.3 9.5 126 265-393 16-149 (149)
130 4b8c_D Glucose-repressible alc 99.6 1.5E-15 5.2E-20 150.1 8.1 150 2-152 176-331 (727)
131 2je0_A Acidic leucine-rich nuc 99.6 4.9E-15 1.7E-19 116.7 9.1 124 21-145 15-148 (149)
132 2wfh_A SLIT homolog 2 protein 99.6 3.2E-14 1.1E-18 117.0 13.8 125 223-350 14-139 (193)
133 1a9n_A U2A', U2A'; complex (nu 99.6 3E-15 1E-19 121.5 7.3 105 291-398 43-154 (176)
134 4h09_A Hypothetical leucine ri 99.6 7.2E-13 2.5E-17 121.5 23.7 309 18-383 41-355 (379)
135 1a9n_A U2A', U2A'; complex (nu 99.6 1.9E-15 6.5E-20 122.7 5.4 132 19-151 15-154 (176)
136 2wfh_A SLIT homolog 2 protein 99.6 7.9E-14 2.7E-18 114.6 14.9 128 198-327 12-139 (193)
137 1w8a_A SLIT protein; signaling 99.6 4.3E-14 1.5E-18 116.3 12.7 126 199-326 11-138 (192)
138 1w8a_A SLIT protein; signaling 99.6 4.8E-14 1.6E-18 116.0 13.0 127 222-350 11-139 (192)
139 2o6r_A Variable lymphocyte rec 99.5 1.3E-13 4.5E-18 111.9 15.1 127 222-350 10-137 (177)
140 2o6r_A Variable lymphocyte rec 99.5 2.6E-13 8.9E-18 110.1 16.1 130 268-400 9-140 (177)
141 4h09_A Hypothetical leucine ri 99.5 1.8E-12 6.3E-17 118.7 22.6 300 2-360 49-356 (379)
142 4b8c_D Glucose-repressible alc 99.5 4.9E-14 1.7E-18 139.4 12.7 124 282-407 216-339 (727)
143 1ds9_A Outer arm dynein; leuci 99.5 4.4E-16 1.5E-20 129.1 -4.9 131 19-150 14-153 (198)
144 2r9u_A Variable lymphocyte rec 99.4 1.5E-12 5E-17 105.0 9.9 104 2-108 15-121 (174)
145 3g39_A Variable lymphocyte rec 99.4 1.5E-12 5.1E-17 104.6 9.9 103 2-107 12-117 (170)
146 1ds9_A Outer arm dynein; leuci 99.3 3.9E-14 1.3E-18 117.2 -1.6 143 3-150 22-185 (198)
147 3g39_A Variable lymphocyte rec 99.3 1E-11 3.4E-16 99.8 12.4 104 222-327 12-115 (170)
148 2r9u_A Variable lymphocyte rec 99.3 1.5E-11 5E-16 99.1 12.9 104 222-327 15-118 (174)
149 3un9_A NLR family member X1; l 99.3 7E-13 2.4E-17 120.4 2.8 152 1-152 74-254 (372)
150 3un9_A NLR family member X1; l 99.2 1.6E-13 5.6E-18 124.6 -4.0 156 218-373 71-252 (372)
151 2ifg_A High affinity nerve gro 99.1 2.5E-10 8.6E-15 103.2 8.0 100 4-105 13-116 (347)
152 2ifg_A High affinity nerve gro 99.0 9.8E-10 3.4E-14 99.2 10.0 104 199-304 11-117 (347)
153 1io0_A Tropomodulin; LRR prote 98.8 4E-09 1.4E-13 85.7 4.1 112 16-127 29-164 (185)
154 2ra8_A Uncharacterized protein 98.7 4.3E-09 1.5E-13 94.7 3.2 154 217-373 137-320 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 1E-08 3.6E-13 83.2 3.2 113 39-151 29-165 (185)
156 2ra8_A Uncharacterized protein 98.5 5.4E-08 1.8E-12 87.5 4.0 173 196-371 139-341 (362)
157 3rw6_A Nuclear RNA export fact 98.2 1.1E-06 3.7E-11 75.0 5.7 61 44-105 168-233 (267)
158 3e4g_A ATP synthase subunit S, 98.1 5.8E-07 2E-11 71.0 1.3 81 23-103 61-150 (176)
159 1pgv_A TMD-1, tropomodulin TMD 98.1 2.2E-06 7.6E-11 69.0 4.2 84 19-102 37-136 (197)
160 3rw6_A Nuclear RNA export fact 98.0 4.4E-06 1.5E-10 71.2 4.5 103 41-143 136-257 (267)
161 3e4g_A ATP synthase subunit S, 97.8 3.9E-06 1.3E-10 66.2 1.0 82 219-300 61-149 (176)
162 1pgv_A TMD-1, tropomodulin TMD 97.8 1.7E-05 5.7E-10 63.9 4.1 110 40-149 35-169 (197)
163 3rfe_A Platelet glycoprotein I 97.6 0.00024 8.1E-09 53.4 8.2 55 341-397 12-68 (130)
164 3rfe_A Platelet glycoprotein I 96.6 0.0054 1.9E-07 45.8 6.5 54 223-278 12-67 (130)
165 2lz0_A Uncharacterized protein 90.8 0.68 2.3E-05 32.4 6.1 44 254-298 8-51 (100)
166 2lz0_A Uncharacterized protein 89.9 0.71 2.4E-05 32.3 5.6 48 276-324 6-53 (100)
No 1
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=9e-41 Score=326.93 Aligned_cols=351 Identities=23% Similarity=0.343 Sum_probs=285.6
Q ss_pred cceecChhHHhhcccccceecccccccC------------------Cchhhh--ccccCCeEeccCCccc-cCCCCCccC
Q 014560 10 KLTVLSNNLIASWTMLTELIASKNLLNG------------------MPETIG--SLSRLIRLDLHQNRIL-SIPSSISGC 68 (422)
Q Consensus 10 ~i~~i~~~~~~~~~~L~~L~l~~~~i~~------------------~~~~~~--~~~~L~~L~l~~~~~~-~l~~~~~~~ 68 (422)
+++.||.. |.++++|++|++++|.++. +|..+. ++++|++|++++|.+. .+|..+.++
T Consensus 194 ~l~~ip~~-l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l 272 (636)
T 4eco_A 194 NITFVSKA-VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKAL 272 (636)
T ss_dssp EEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTC
T ss_pred CCccCCHH-HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcC
Confidence 44556664 7788888888888888876 777777 8888888888888755 567778888
Q ss_pred CCCCEEEcCCCc-Cc--cCchhhhCC------CCCcEEEccCCccccccc--ccccce-ecEEEcCCCCCC-CCCccccc
Q 014560 69 CSLAEFYMGNNA-LS--ALPAELGKL------SKLGTLDLHSNQLKEYCV--EACQLR-LSVLDLSNNSLS-GLPPEIGK 135 (422)
Q Consensus 69 ~~L~~L~l~~~~-i~--~l~~~l~~~------~~L~~L~l~~~~~~~l~~--~~~~~~-L~~L~l~~~~~~-~~~~~~~~ 135 (422)
++|++|++++|. ++ .+|..+..+ ++|++|++++|.++.+|. .+.... |+.|++++|.+. .+| .+..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~ 351 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS 351 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC
Confidence 888888888887 76 377777665 788888888888887776 555554 888888888887 477 7778
Q ss_pred cCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccc-cceeeccCCCCCCCCcc
Q 014560 136 MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT-SKELSLEGMNLSAIPSE 214 (422)
Q Consensus 136 l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~~~ 214 (422)
+++|+.|++++|.++.++.... .... ++.+++++|.+..+|..
T Consensus 352 l~~L~~L~L~~N~l~~lp~~l~------------------------------------~l~~~L~~L~Ls~N~l~~lp~~ 395 (636)
T 4eco_A 352 EIKLASLNLAYNQITEIPANFC------------------------------------GFTEQVENLSFAHNKLKYIPNI 395 (636)
T ss_dssp EEEESEEECCSSEEEECCTTSE------------------------------------EECTTCCEEECCSSCCSSCCSC
T ss_pred CCCCCEEECCCCccccccHhhh------------------------------------hhcccCcEEEccCCcCcccchh
Confidence 8888888888887765543321 1245 89999999999999887
Q ss_pred cccCC--CccEEeCCCCcccc-CCcccc-------CCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCC
Q 014560 215 IWEAG--EITKLDLSRNSIQE-LPPELS-------SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 284 (422)
Q Consensus 215 ~~~~~--~L~~L~l~~~~l~~-~~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 284 (422)
+...+ +|+.|++++|.+.. +|..+. .+++|+.|++++|.+..++...+..+++|+.|++++|.+..++..
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 76654 89999999999977 556676 778999999999999999998888899999999999999988877
Q ss_pred CCCCCC-------CccEEEccCCcCCCCCCCCCC--CCccCceEEeCCCcCccCCcccccCCCCcEEECCC------CCC
Q 014560 285 GFKDIP-------MLQILDLSYNIASLPENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSL 349 (422)
Q Consensus 285 ~~~~~~-------~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~------n~l 349 (422)
.+.... +|+.|++++|.++.. +..+. .+++|+.|++++|.++.+|..+.++++|+.|++++ |.+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l 554 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLTKL-SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRT 554 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCCBC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCSSCCEEECCSCBCTTCCBC
T ss_pred HhccccccccccCCccEEECcCCcCCcc-ChhhhhccCCCcCEEECCCCCCCCcChhhhcCCCCCEEECCCCcccccCcc
Confidence 665443 999999999999854 44454 89999999999999999999999999999999954 555
Q ss_pred c-ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchH
Q 014560 350 Q-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRT 402 (422)
Q Consensus 350 ~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~ 402 (422)
. .+|..+.++++|+.|++++|.++.+|..+. ++|++|++++|++.+++..
T Consensus 555 ~~~~p~~l~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~~~~ 605 (636)
T 4eco_A 555 LREWPEGITLCPSLTQLQIGSNDIRKVNEKIT---PNISVLDIKDNPNISIDLS 605 (636)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---TTCCEEECCSCTTCEEECT
T ss_pred cccChHHHhcCCCCCEEECCCCcCCccCHhHh---CcCCEEECcCCCCccccHH
Confidence 4 679999999999999999999999998754 7999999999999887754
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=6.2e-41 Score=328.07 Aligned_cols=364 Identities=20% Similarity=0.254 Sum_probs=316.3
Q ss_pred ceeeccCCcce-ecChhHHhhcccccceecccccc---------------------------------------------
Q 014560 2 SKLDVEGNKLT-VLSNNLIASWTMLTELIASKNLL--------------------------------------------- 35 (422)
Q Consensus 2 ~~L~ls~~~i~-~i~~~~~~~~~~L~~L~l~~~~i--------------------------------------------- 35 (422)
+.|+|+++++. .++ .++.++++|++|++++|.+
T Consensus 84 ~~L~L~~~~l~g~lp-~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~ 162 (636)
T 4eco_A 84 TGLSLEGFGASGRVP-DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLI 162 (636)
T ss_dssp EEEECTTSCCEEEEC-GGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEEecCcccCCcCC-hHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHH
Confidence 57999999998 455 4599999999999998843
Q ss_pred ---------------------------------cCCchhhhccccCCeEeccCCcccc------------------CCCC
Q 014560 36 ---------------------------------NGMPETIGSLSRLIRLDLHQNRILS------------------IPSS 64 (422)
Q Consensus 36 ---------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~ 64 (422)
+.+|..+.++++|++|++++|.++. +|+.
T Consensus 163 ~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~ 242 (636)
T 4eco_A 163 KDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242 (636)
T ss_dssp HHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchh
Confidence 2367789999999999999999998 9999
Q ss_pred Cc--cCCCCCEEEcCCCcCc-cCchhhhCCCCCcEEEccCCc-ccc--ccccccc-------ceecEEEcCCCCCCCCCc
Q 014560 65 IS--GCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQ-LKE--YCVEACQ-------LRLSVLDLSNNSLSGLPP 131 (422)
Q Consensus 65 ~~--~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~-~~~--l~~~~~~-------~~L~~L~l~~~~~~~~~~ 131 (422)
+. ++++|++|++++|.+. .+|..+.++++|++|++++|. ++. +|..+.. .+|+.|++++|.++.+|.
T Consensus 243 l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 243 LKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp CCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred hhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 98 9999999999999876 789999999999999999998 874 7777665 459999999999999998
Q ss_pred --cccccCCccEEEcCCCccc-cccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCC
Q 014560 132 --EIGKMTTLRKLLLTGNPLR-TLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 208 (422)
Q Consensus 132 --~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 208 (422)
.+..+++|++|++++|.++ .++ .. .....++.+++++|.+
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~------------------------------------~~l~~L~~L~L~~N~l 365 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AF------------------------------------GSEIKLASLNLAYNQI 365 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CC------------------------------------EEEEEESEEECCSSEE
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hh------------------------------------CCCCCCCEEECCCCcc
Confidence 8999999999999999987 554 11 1125889999999999
Q ss_pred CCCCcccccCCC-ccEEeCCCCccccCCccccCCC--CCcEEEecCCcCCCCChHHHh-------cCCCCCEEECCCCCC
Q 014560 209 SAIPSEIWEAGE-ITKLDLSRNSIQELPPELSSCA--SLQTLILSRNKIKDWPDAILT-------SLSSLSCLKLDNNPL 278 (422)
Q Consensus 209 ~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~~ 278 (422)
..+|..+..+++ |++|++++|.++.+|..+...+ +|+.|++++|.+....+..+. .+++|+.|++++|.+
T Consensus 366 ~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l 445 (636)
T 4eco_A 366 TEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445 (636)
T ss_dssp EECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCC
T ss_pred ccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCcc
Confidence 999999988888 9999999999999998877654 899999999999886655555 677999999999999
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCC-------ccCceEEeCCCcCccCCcccc--cCCCCcEEECCCCCC
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL-------PHLQELYLRRMQLREAPTDIL--RLQQLRILDLSQNSL 349 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-------~~L~~L~l~~~~i~~l~~~~~--~~~~L~~l~l~~n~l 349 (422)
..++...+..+++|+.|++++|.++......+... ++|+.|++++|.++.+|..+. .+++|+.|++++|.+
T Consensus 446 ~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l 525 (636)
T 4eco_A 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF 525 (636)
T ss_dssp CSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCC
T ss_pred CcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCC
Confidence 98888767789999999999999986555444433 399999999999999998887 899999999999999
Q ss_pred cccCccCcCCCCCCEEeCC------CCCCc-ccCCccccCCccccEEEccCCCCCccchHHH
Q 014560 350 QSIPEGFKNLTSLTELDLS------DNNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 350 ~~l~~~~~~~~~L~~L~l~------~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~ 404 (422)
+.+|..+.++++|+.|+++ +|.+. .+|..+..+ ++|++|++++|++..++..++
T Consensus 526 ~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~ip~~~~ 586 (636)
T 4eco_A 526 SKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLC-PSLTQLQIGSNDIRKVNEKIT 586 (636)
T ss_dssp SSCCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCCCBCCSCCC
T ss_pred CCcChhhhcCCCCCEEECCCCcccccCcccccChHHHhcC-CCCCEEECCCCcCCccCHhHh
Confidence 9999999999999999995 45554 788888777 999999999999999987654
No 3
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.7e-39 Score=315.65 Aligned_cols=405 Identities=24% Similarity=0.289 Sum_probs=258.6
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
+++|++++|+|+.++..+|.++++|++|++++|.+..+ |.+|.++++|++|++++|.+..+ |..|.++++|++|++++
T Consensus 35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~ 114 (606)
T 3t6q_A 35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQ 114 (606)
T ss_dssp CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTT
T ss_pred CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccc
Confidence 57899999999999888899999999999999999776 68899999999999999999865 77899999999999999
Q ss_pred CcCccC-chhhhCCCCCcEEEccCCccccc--ccccccceecEEEcCCCCCCCC-CccccccCCcc--EEEcCCCccccc
Q 014560 79 NALSAL-PAELGKLSKLGTLDLHSNQLKEY--CVEACQLRLSVLDLSNNSLSGL-PPEIGKMTTLR--KLLLTGNPLRTL 152 (422)
Q Consensus 79 ~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l--~~~~~~~~L~~L~l~~~~~~~~-~~~~~~l~~L~--~L~l~~~~~~~~ 152 (422)
|.++.+ +..+.++++|++|++++|.+..+ +......+|+.|++++|.+..+ +..+..+++|+ .+++++|.+..+
T Consensus 115 n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~ 194 (606)
T 3t6q_A 115 TGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGI 194 (606)
T ss_dssp SCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEE
T ss_pred cCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCcc
Confidence 999987 67799999999999999999876 4434434499999999999884 56688999999 899999998877
Q ss_pred cccccCCC------------ChHHHHHHHcc------CCCCccccccchhhhHHHhh----------------------h
Q 014560 153 RSSLVNGP------------TPALLKYLRSR------LPENEDSEASTTKEDLITMA----------------------T 192 (422)
Q Consensus 153 ~~~~~~~~------------~~~~l~~~~~~------~~~~~~~~~~~~~~~~~~~~----------------------~ 192 (422)
+...+... .+..+..+... .................... .
T Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~ 274 (606)
T 3t6q_A 195 EPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF 274 (606)
T ss_dssp CTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTT
T ss_pred ChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHh
Confidence 66554332 11111111100 00000000000000000000 1
Q ss_pred ccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCCcCC-CCChHHHhcCCCCCE
Q 014560 193 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIK-DWPDAILTSLSSLSC 270 (422)
Q Consensus 193 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~ 270 (422)
.....++.++++++.+..+|..+..+++|++|++++|.+..+ +..+..+++|++|++++|.+. ..+...+..+++|+.
T Consensus 275 ~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~ 354 (606)
T 3t6q_A 275 HCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRE 354 (606)
T ss_dssp TTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCE
T ss_pred ccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCE
Confidence 112344444444444444444444444455555554444443 223444445555555544433 233333445555555
Q ss_pred EECCCCCCCcCC--CCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC-C-cccccCCCCcEEECCC
Q 014560 271 LKLDNNPLRQVP--SDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-P-TDILRLQQLRILDLSQ 346 (422)
Q Consensus 271 L~l~~~~~~~~~--~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~-~~~~~~~~L~~l~l~~ 346 (422)
|++++|.+.... +..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+... + ..+.++++|+.|++++
T Consensus 355 L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~ 434 (606)
T 3t6q_A 355 LDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434 (606)
T ss_dssp EECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTT
T ss_pred EECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCC
Confidence 555555554433 33355556666666666655555555566666666666666666533 2 2255667777777777
Q ss_pred CCCccc-CccCcCCCCCCEEeCCCCCCcc--cC--CccccCCccccEEEccCCCCCccchHHHhh
Q 014560 347 NSLQSI-PEGFKNLTSLTELDLSDNNISA--LP--PELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 347 n~l~~l-~~~~~~~~~L~~L~l~~n~l~~--~~--~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
|.++.. |..+..+++|+.|++++|.++. ++ ..+..+ ++|++|++++|.++.+.+..|..
T Consensus 435 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~ 498 (606)
T 3t6q_A 435 SLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL-GRLEILVLSFCDLSSIDQHAFTS 498 (606)
T ss_dssp CCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGC-TTCCEEECTTSCCCEECTTTTTT
T ss_pred CccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccC-CCccEEECCCCccCccChhhhcc
Confidence 777643 5556777777777777777763 22 223333 77788888887777776655543
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.9e-39 Score=321.55 Aligned_cols=357 Identities=23% Similarity=0.333 Sum_probs=305.0
Q ss_pred CCcceecChhHHhhcccccceecccccccC------------------Cchhhh--ccccCCeEeccCCccc-cCCCCCc
Q 014560 8 GNKLTVLSNNLIASWTMLTELIASKNLLNG------------------MPETIG--SLSRLIRLDLHQNRIL-SIPSSIS 66 (422)
Q Consensus 8 ~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~------------------~~~~~~--~~~~L~~L~l~~~~~~-~l~~~~~ 66 (422)
+|++..||.. |.++++|++|++++|.+.. +|..+. ++++|++|++++|.+. .+|..+.
T Consensus 434 ~N~L~~IP~~-l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~ 512 (876)
T 4ecn_A 434 TNRITFISKA-IQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLY 512 (876)
T ss_dssp SCEEEEECGG-GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGG
T ss_pred cCcccchhHH-HhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHh
Confidence 4778889876 9999999999999999987 888877 9999999999999865 7799999
Q ss_pred cCCCCCEEEcCCCc-Ccc--CchhhhCCC-------CCcEEEccCCccccccc--ccccce-ecEEEcCCCCCCCCCccc
Q 014560 67 GCCSLAEFYMGNNA-LSA--LPAELGKLS-------KLGTLDLHSNQLKEYCV--EACQLR-LSVLDLSNNSLSGLPPEI 133 (422)
Q Consensus 67 ~~~~L~~L~l~~~~-i~~--l~~~l~~~~-------~L~~L~l~~~~~~~l~~--~~~~~~-L~~L~l~~~~~~~~~~~~ 133 (422)
++++|++|++++|. ++. +|..+..++ +|++|++++|.++.+|. .+.... |+.|++++|.+..+| .+
T Consensus 513 ~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~ 591 (876)
T 4ecn_A 513 DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AF 591 (876)
T ss_dssp GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CC
T ss_pred CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hh
Confidence 99999999999998 874 787766554 99999999999999988 666665 999999999999888 89
Q ss_pred cccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccc-cceeeccCCCCCCCC
Q 014560 134 GKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVT-SKELSLEGMNLSAIP 212 (422)
Q Consensus 134 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~l~l~~~~~~~~~ 212 (422)
..+++|+.|++++|.+..++..... ... ++.+++++|.+..+|
T Consensus 592 ~~L~~L~~L~Ls~N~l~~lp~~l~~------------------------------------l~~~L~~L~Ls~N~L~~lp 635 (876)
T 4ecn_A 592 GTNVKLTDLKLDYNQIEEIPEDFCA------------------------------------FTDQVEGLGFSHNKLKYIP 635 (876)
T ss_dssp CTTSEESEEECCSSCCSCCCTTSCE------------------------------------ECTTCCEEECCSSCCCSCC
T ss_pred cCCCcceEEECcCCccccchHHHhh------------------------------------ccccCCEEECcCCCCCcCc
Confidence 9999999999999998765433221 235 899999999999888
Q ss_pred cccccCC--CccEEeCCCCccccCCccc----c--CCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCC
Q 014560 213 SEIWEAG--EITKLDLSRNSIQELPPEL----S--SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD 284 (422)
Q Consensus 213 ~~~~~~~--~L~~L~l~~~~l~~~~~~~----~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 284 (422)
..+...+ +|+.|++++|.+...++.+ . .+++|+.|++++|.+..++...+..+++|+.|++++|.+..++..
T Consensus 636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~ 715 (876)
T 4ecn_A 636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPEN 715 (876)
T ss_dssp SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTT
T ss_pred hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChH
Confidence 8776654 4999999999987633222 2 456899999999999999998888999999999999999988876
Q ss_pred CCCCC-------CCccEEEccCCcCCCCCCCCCC--CCccCceEEeCCCcCccCCcccccCCCCcEEECCC------CCC
Q 014560 285 GFKDI-------PMLQILDLSYNIASLPENPPFS--SLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQ------NSL 349 (422)
Q Consensus 285 ~~~~~-------~~L~~l~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~------n~l 349 (422)
.+... ++|+.|++++|.+... +..+. .+++|+.|++++|.+..+|..+.++++|+.|++++ |.+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~~l-p~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l 794 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLTSL-SDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRI 794 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCCCC-CGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBC
T ss_pred HhccccccccccCCccEEECCCCCCccc-hHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccc
Confidence 55533 3999999999999854 44454 89999999999999999999999999999999987 555
Q ss_pred c-ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 350 Q-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 350 ~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
. .+|..+.++++|+.|++++|.++.+|..+. ++|+.|++++|++..++...|..
T Consensus 795 ~~~ip~~l~~L~~L~~L~Ls~N~L~~Ip~~l~---~~L~~LdLs~N~l~~i~~~~~~~ 849 (876)
T 4ecn_A 795 LRQWPTGITTCPSLIQLQIGSNDIRKVDEKLT---PQLYILDIADNPNISIDVTSVCP 849 (876)
T ss_dssp CCCCCTTGGGCSSCCEEECCSSCCCBCCSCCC---SSSCEEECCSCTTCEEECGGGHH
T ss_pred cccChHHHhcCCCCCEEECCCCCCCccCHhhc---CCCCEEECCCCCCCccChHHccc
Confidence 4 678899999999999999999999998854 69999999999999888765533
No 5
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.8e-39 Score=314.27 Aligned_cols=381 Identities=21% Similarity=0.227 Sum_probs=279.7
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~ 78 (422)
|++|++++|++..++..+|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.++ ..+.++++|++|++++
T Consensus 58 L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 137 (606)
T 3vq2_A 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAH 137 (606)
T ss_dssp CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCS
T ss_pred CcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCC
Confidence 46677777777766666667777777777777777655 566677777777777777766554 5567777777777777
Q ss_pred CcCc--cCchhhhCCCCCcEEEccCCcccccccccc----------------------------c-ceecEEEcCCCCC-
Q 014560 79 NALS--ALPAELGKLSKLGTLDLHSNQLKEYCVEAC----------------------------Q-LRLSVLDLSNNSL- 126 (422)
Q Consensus 79 ~~i~--~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~----------------------------~-~~L~~L~l~~~~~- 126 (422)
|.+. .+|..+.++++|++|++++|.++.++.... . .+|+.|++++|.+
T Consensus 138 n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~ 217 (606)
T 3vq2_A 138 NFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS 217 (606)
T ss_dssp SCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSC
T ss_pred CcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccc
Confidence 7776 457777778888888887776664432210 0 0233344333322
Q ss_pred --------------------------------------------------------------------------------
Q 014560 127 -------------------------------------------------------------------------------- 126 (422)
Q Consensus 127 -------------------------------------------------------------------------------- 126 (422)
T Consensus 218 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 297 (606)
T 3vq2_A 218 SNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297 (606)
T ss_dssp HHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCC
T ss_pred hhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccc
Confidence
Q ss_pred CCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCC
Q 014560 127 SGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGM 206 (422)
Q Consensus 127 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~ 206 (422)
..++ .+..+++|+.|++++|.+..++.. ... .+..+......... .........++.+++++|
T Consensus 298 ~~l~-~l~~~~~L~~L~l~~n~l~~lp~~--~l~----------~L~~L~l~~n~~~~----~~~~~~l~~L~~L~ls~n 360 (606)
T 3vq2_A 298 KYLE-DVPKHFKWQSLSIIRCQLKQFPTL--DLP----------FLKSLTLTMNKGSI----SFKKVALPSLSYLDLSRN 360 (606)
T ss_dssp CCCC-CCCTTCCCSEEEEESCCCSSCCCC--CCS----------SCCEEEEESCSSCE----ECCCCCCTTCCEEECCSS
T ss_pred hhhh-hccccccCCEEEcccccCcccccC--CCC----------ccceeeccCCcCcc----chhhccCCCCCEEECcCC
Confidence 2222 344455667777777766555421 110 00111111110000 001223468999999999
Q ss_pred CCCCC---CcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCCh-HHHhcCCCCCEEECCCCCCCcCC
Q 014560 207 NLSAI---PSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVP 282 (422)
Q Consensus 207 ~~~~~---~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~ 282 (422)
.+... +..+..+++|++|++++|.+..+|..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+....
T Consensus 361 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 440 (606)
T 3vq2_A 361 ALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDF 440 (606)
T ss_dssp CEEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECC
T ss_pred ccCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccc
Confidence 88755 677778899999999999999988889999999999999999888766 56788999999999999999888
Q ss_pred CCCCCCCCCccEEEccCCcCCC-CCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCC
Q 014560 283 SDGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNL 359 (422)
Q Consensus 283 ~~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~ 359 (422)
+..+..+++|+.|++++|.+.+ ..+..+..+++|+.|++++|.++.+ |..+.++++|+.|++++|.++.+ |..+.++
T Consensus 441 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 520 (606)
T 3vq2_A 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQL 520 (606)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCC
Confidence 8889999999999999999987 4677789999999999999999865 55688999999999999999976 7889999
Q ss_pred CCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCc
Q 014560 360 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
++|+.|++++|+++.+|..+....++|+++++++|++..
T Consensus 521 ~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 521 YSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp TTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCCCCC
T ss_pred CcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCCccc
Confidence 999999999999999999877773369999999999874
No 6
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-39 Score=316.73 Aligned_cols=397 Identities=23% Similarity=0.267 Sum_probs=247.7
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
+++|++++|++..++..+|.++++|++|++++|.++.+ +.+|.++++|++|++++|.++.+ |..|.++++|++|++++
T Consensus 34 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~ 113 (606)
T 3vq2_A 34 TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE 113 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTT
T ss_pred cCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccC
Confidence 57899999999999888899999999999999999877 56788999999999999998877 78899999999999999
Q ss_pred CcCccCc-hhhhCCCCCcEEEccCCcccc--cccccccce-ecEEEcCCCCCCCC-CccccccCCcc----EEEcCCCcc
Q 014560 79 NALSALP-AELGKLSKLGTLDLHSNQLKE--YCVEACQLR-LSVLDLSNNSLSGL-PPEIGKMTTLR----KLLLTGNPL 149 (422)
Q Consensus 79 ~~i~~l~-~~l~~~~~L~~L~l~~~~~~~--l~~~~~~~~-L~~L~l~~~~~~~~-~~~~~~l~~L~----~L~l~~~~~ 149 (422)
|.+..++ ..+.++++|++|++++|.+.. +|..+...+ |+.|++++|.++.+ +..+..+++|+ ++++++|.+
T Consensus 114 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l 193 (606)
T 3vq2_A 114 TKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPI 193 (606)
T ss_dssp SCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCC
T ss_pred CccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCc
Confidence 9998775 668999999999999999884 566666665 99999999988873 45566666554 788888888
Q ss_pred ccccccccCCCC----------------hHHHHHHHccC---------CCC------ccc----------------cccc
Q 014560 150 RTLRSSLVNGPT----------------PALLKYLRSRL---------PEN------EDS----------------EAST 182 (422)
Q Consensus 150 ~~~~~~~~~~~~----------------~~~l~~~~~~~---------~~~------~~~----------------~~~~ 182 (422)
+.++...+.... +..+..+.... ... ... ....
T Consensus 194 ~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 273 (606)
T 3vq2_A 194 DFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273 (606)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTT
T ss_pred ceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheecccccc
Confidence 776655443221 11111110000 000 000 0000
Q ss_pred hhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCC---------------------------
Q 014560 183 TKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP--------------------------- 235 (422)
Q Consensus 183 ~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~--------------------------- 235 (422)
....... .....+++.+++.++.+..++ .+..+++|++|++++|.+..+|
T Consensus 274 -~~~~~~~-~~~l~~L~~L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l~~lp~~~l~~L~~L~l~~n~~~~~~~~~~l~ 350 (606)
T 3vq2_A 274 -FSDDIVK-FHCLANVSAMSLAGVSIKYLE-DVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALP 350 (606)
T ss_dssp -CCGGGGS-CGGGTTCSEEEEESCCCCCCC-CCCTTCCCSEEEEESCCCSSCCCCCCSSCCEEEEESCSSCEECCCCCCT
T ss_pred -ccccccc-cccCCCCCEEEecCccchhhh-hccccccCCEEEcccccCcccccCCCCccceeeccCCcCccchhhccCC
Confidence 0000000 111233444444444443333 2333333333333333332222
Q ss_pred -------------------ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC-CCCCCCCCccEE
Q 014560 236 -------------------PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQIL 295 (422)
Q Consensus 236 -------------------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l 295 (422)
..+..+++|+.|++++|.+...+ ..+..+++|+.|++++|.+...++ ..+..+++|+.|
T Consensus 351 ~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 429 (606)
T 3vq2_A 351 SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYL 429 (606)
T ss_dssp TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEE
T ss_pred CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCCCCCCeeECCCCccCCccChhhhhccccCCEE
Confidence 22333344444444444333333 223444555555555554444433 345556666666
Q ss_pred EccCCcCCCCCCCCCCCCccCceEEeCCCcCcc--CCcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCC
Q 014560 296 DLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNI 372 (422)
Q Consensus 296 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l 372 (422)
++++|.+.+..+..+..+++|++|++++|.+.. +|..+.++++|+.|++++|.++.+ |..+..+++|+.|++++|++
T Consensus 430 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l 509 (606)
T 3vq2_A 430 DISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNL 509 (606)
T ss_dssp ECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred ECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcC
Confidence 666666665555566666777777777776664 456666777777777777777754 45577777777777777777
Q ss_pred ccc-CCccccCCccccEEEccCCCCCccchH
Q 014560 373 SAL-PPELGLLEPSLQALRLDGNPLRSIRRT 402 (422)
Q Consensus 373 ~~~-~~~~~~~~~~L~~l~l~~n~~~~i~~~ 402 (422)
+.+ |..+..+ ++|++|++++|+++.++..
T Consensus 510 ~~~~~~~~~~l-~~L~~L~l~~N~l~~~p~~ 539 (606)
T 3vq2_A 510 LFLDSSHYNQL-YSLSTLDCSFNRIETSKGI 539 (606)
T ss_dssp SCEEGGGTTTC-TTCCEEECTTSCCCCEESC
T ss_pred CCcCHHHccCC-CcCCEEECCCCcCcccCHh
Confidence 755 3344444 7778888888777777765
No 7
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-38 Score=308.76 Aligned_cols=393 Identities=23% Similarity=0.276 Sum_probs=273.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
|++|++++|++..+...+|.++++|++|++++|.+..+ |..+.++++|++|++++|.++.+ +..+.++++|++|++++
T Consensus 59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~ 138 (606)
T 3t6q_A 59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGS 138 (606)
T ss_dssp CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCS
T ss_pred ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCC
Confidence 56777777777777666677777777777777777554 55667777777777777766655 45566666666666666
Q ss_pred CcCccCc-hhhhCCCCCcEEEccCCccccc--------------------------cccccc------------------
Q 014560 79 NALSALP-AELGKLSKLGTLDLHSNQLKEY--------------------------CVEACQ------------------ 113 (422)
Q Consensus 79 ~~i~~l~-~~l~~~~~L~~L~l~~~~~~~l--------------------------~~~~~~------------------ 113 (422)
|.+..++ ..+..+++|++|++++|.++.+ ++..+.
T Consensus 139 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 218 (606)
T 3t6q_A 139 NHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVI 218 (606)
T ss_dssp SCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHH
T ss_pred CcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHH
Confidence 6665441 2233355555555555554433 221111
Q ss_pred -----------------------------------ceecEEEcCCCCCCCCCc-cccccCCccEEEcCCCcccccccccc
Q 014560 114 -----------------------------------LRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLV 157 (422)
Q Consensus 114 -----------------------------------~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~ 157 (422)
..++.+++++|.+..++. .+..+++|++|++++|.+++++....
T Consensus 219 ~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~ 298 (606)
T 3t6q_A 219 FKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV 298 (606)
T ss_dssp HHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCC
T ss_pred hhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhc
Confidence 135555555555555433 36677777888887777766654332
Q ss_pred CCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcc-cccCCCccEEeCCCCccccC-
Q 014560 158 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSE-IWEAGEITKLDLSRNSIQEL- 234 (422)
Q Consensus 158 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~-~~~~~~L~~L~l~~~~l~~~- 234 (422)
..... ..+...... ..............++.++++++.+. .++.. +..+++|++|++++|.+..+
T Consensus 299 ~l~~L----------~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 366 (606)
T 3t6q_A 299 GLSTL----------KKLVLSANK--FENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366 (606)
T ss_dssp SCTTC----------CEEECTTCC--CSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEE
T ss_pred ccccC----------CEEECccCC--cCcCchhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCcccccc
Confidence 21110 000000000 00111122233467888888888766 45443 56688999999999988764
Q ss_pred --CccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC-CCCCCCCCccEEEccCCcCCCCCCCCCC
Q 014560 235 --PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDLSYNIASLPENPPFS 311 (422)
Q Consensus 235 --~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l~~~~~~~~~~~~~~ 311 (422)
+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+ ..+..+++|+.|++++|.+.+..+..+.
T Consensus 367 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 446 (606)
T 3t6q_A 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFD 446 (606)
T ss_dssp ESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTT
T ss_pred CcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHh
Confidence 5568889999999999998888777778889999999999998876543 4478899999999999999888888888
Q ss_pred CCccCceEEeCCCcCcc----CCcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccc
Q 014560 312 SLPHLQELYLRRMQLRE----APTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSL 386 (422)
Q Consensus 312 ~~~~L~~L~l~~~~i~~----l~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (422)
.+++|++|++++|.+.. .+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.++...+..+++|
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L 526 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI 526 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc
Confidence 99999999999998874 224578899999999999999976 6778999999999999999985544433334889
Q ss_pred cEEEccCCCCCccchHHHhh
Q 014560 387 QALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 387 ~~l~l~~n~~~~i~~~~~~~ 406 (422)
+|++++|+++.+++..+..
T Consensus 527 -~L~L~~N~l~~~~~~~~~~ 545 (606)
T 3t6q_A 527 -YLNLASNHISIILPSLLPI 545 (606)
T ss_dssp -EEECCSSCCCCCCGGGHHH
T ss_pred -EEECcCCcccccCHhhccc
Confidence 9999999999988877654
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-39 Score=315.41 Aligned_cols=398 Identities=24% Similarity=0.271 Sum_probs=280.1
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~ 78 (422)
+++|++++|++..++..+|.++++|++|++++|.++.++ ..|.++++|++|++++|.++.++ ..|.++++|++|++++
T Consensus 30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 109 (570)
T 2z63_A 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 109 (570)
T ss_dssp CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence 578999999999998888999999999999999998774 67889999999999999988764 6789999999999999
Q ss_pred CcCccCch-hhhCCCCCcEEEccCCcccc--cccccccce-ecEEEcCCCCCCCC-CccccccCCc----cEEEcCCCcc
Q 014560 79 NALSALPA-ELGKLSKLGTLDLHSNQLKE--YCVEACQLR-LSVLDLSNNSLSGL-PPEIGKMTTL----RKLLLTGNPL 149 (422)
Q Consensus 79 ~~i~~l~~-~l~~~~~L~~L~l~~~~~~~--l~~~~~~~~-L~~L~l~~~~~~~~-~~~~~~l~~L----~~L~l~~~~~ 149 (422)
|.++.++. .+..+++|++|++++|.+.. +|..+...+ |+.|++++|.+..+ +..+..+++| +.+++++|.+
T Consensus 110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l 189 (570)
T 2z63_A 110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189 (570)
T ss_dssp SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred cccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCc
Confidence 99988765 58899999999999998885 566666555 99999999988874 4567778888 7889998888
Q ss_pred ccccccccCCCC----------------hHHHHHHHcc------------------CCCCcccccc-----------c-h
Q 014560 150 RTLRSSLVNGPT----------------PALLKYLRSR------------------LPENEDSEAS-----------T-T 183 (422)
Q Consensus 150 ~~~~~~~~~~~~----------------~~~l~~~~~~------------------~~~~~~~~~~-----------~-~ 183 (422)
..++...+.... +..+..+... .......... . .
T Consensus 190 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~ 269 (570)
T 2z63_A 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269 (570)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTE
T ss_pred eecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchh
Confidence 766554433210 0001100000 0000000000 0 0
Q ss_pred hhhHHHhhhccccccceeeccCCCCCCCCcccc------------------------------------------cCCCc
Q 014560 184 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIW------------------------------------------EAGEI 221 (422)
Q Consensus 184 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~------------------------------------------~~~~L 221 (422)
..............++.+++.++.+..+|..+. .+++|
T Consensus 270 ~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L 349 (570)
T 2z63_A 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 349 (570)
T ss_dssp EESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTC
T ss_pred hhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCccccccccccCCCC
Confidence 000000011112344444444444444443332 33455
Q ss_pred cEEeCCCCccccC---CccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC-CCCCCCCCccEEEc
Q 014560 222 TKLDLSRNSIQEL---PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS-DGFKDIPMLQILDL 297 (422)
Q Consensus 222 ~~L~l~~~~l~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~l~l 297 (422)
++|++++|.+... +..+..+++|+.|++++|.+...+.. +..+++|+.|++++|.+...++ ..+..+++|+.|++
T Consensus 350 ~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l 428 (570)
T 2z63_A 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI 428 (570)
T ss_dssp CEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEEC
T ss_pred CEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeC
Confidence 5555555555442 33455566666666666666555544 5667777777777777666543 45778888888888
Q ss_pred cCCcCCCCCCCCCCCCccCceEEeCCCcCc--cCCcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcc
Q 014560 298 SYNIASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISA 374 (422)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~ 374 (422)
++|.+.+..+..+..+++|+.|++++|.+. .+|..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|+++.
T Consensus 429 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 508 (570)
T 2z63_A 429 SHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKS 508 (570)
T ss_dssp TTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC
T ss_pred cCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCC
Confidence 888888777778888899999999999886 5777888899999999999999876 7788899999999999999988
Q ss_pred cCCccccCCccccEEEccCCCCCcc
Q 014560 375 LPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 375 ~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
++...+..+++|++|++++|++..-
T Consensus 509 ~~~~~~~~l~~L~~L~l~~N~~~~~ 533 (570)
T 2z63_A 509 VPDGIFDRLTSLQKIWLHTNPWDCS 533 (570)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CCHHHhhcccCCcEEEecCCcccCC
Confidence 8776555558999999999988753
No 9
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.4e-39 Score=317.85 Aligned_cols=364 Identities=21% Similarity=0.271 Sum_probs=309.3
Q ss_pred ceeeccCCcce-ecChhHHhhcccccceec-ccccc--------------------------------------------
Q 014560 2 SKLDVEGNKLT-VLSNNLIASWTMLTELIA-SKNLL-------------------------------------------- 35 (422)
Q Consensus 2 ~~L~ls~~~i~-~i~~~~~~~~~~L~~L~l-~~~~i-------------------------------------------- 35 (422)
+.|+|+++++. .+|. ++.++++|++|+| ++|.+
T Consensus 326 ~~L~Ls~~~L~G~ip~-~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~ 404 (876)
T 4ecn_A 326 TGLSLAGFGAKGRVPD-AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404 (876)
T ss_dssp EEEECTTTCCEEEECG-GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHH
T ss_pred EEEECccCCCCCcCch-HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHH
Confidence 57999999998 5664 5999999999999 65532
Q ss_pred ---------------------------------cCCchhhhccccCCeEeccCCcccc------------------CCCC
Q 014560 36 ---------------------------------NGMPETIGSLSRLIRLDLHQNRILS------------------IPSS 64 (422)
Q Consensus 36 ---------------------------------~~~~~~~~~~~~L~~L~l~~~~~~~------------------l~~~ 64 (422)
+.+|..+.++++|++|++++|.++. +|+.
T Consensus 405 ~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~ 484 (876)
T 4ecn_A 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEE 484 (876)
T ss_dssp HHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSC
T ss_pred HHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChh
Confidence 1277889999999999999999998 9999
Q ss_pred Cc--cCCCCCEEEcCCCcCc-cCchhhhCCCCCcEEEccCCc-ccc--cccccccc--------eecEEEcCCCCCCCCC
Q 014560 65 IS--GCCSLAEFYMGNNALS-ALPAELGKLSKLGTLDLHSNQ-LKE--YCVEACQL--------RLSVLDLSNNSLSGLP 130 (422)
Q Consensus 65 ~~--~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~L~l~~~~-~~~--l~~~~~~~--------~L~~L~l~~~~~~~~~ 130 (422)
+. ++++|++|++++|.+. .+|..+.++++|+.|++++|. ++. +|..+... +|+.|++++|.+..+|
T Consensus 485 l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip 564 (876)
T 4ecn_A 485 LSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFP 564 (876)
T ss_dssp CCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCC
T ss_pred hhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccC
Confidence 87 9999999999999865 789999999999999999998 775 66655443 5999999999999999
Q ss_pred c--cccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCC
Q 014560 131 P--EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNL 208 (422)
Q Consensus 131 ~--~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~ 208 (422)
. .+..+++|+.|++++|.++.++ .+. ....++.+++++|.+
T Consensus 565 ~~~~l~~L~~L~~L~Ls~N~l~~lp--~~~-----------------------------------~L~~L~~L~Ls~N~l 607 (876)
T 4ecn_A 565 ASASLQKMVKLGLLDCVHNKVRHLE--AFG-----------------------------------TNVKLTDLKLDYNQI 607 (876)
T ss_dssp CHHHHTTCTTCCEEECTTSCCCBCC--CCC-----------------------------------TTSEESEEECCSSCC
T ss_pred ChhhhhcCCCCCEEECCCCCcccch--hhc-----------------------------------CCCcceEEECcCCcc
Confidence 8 8999999999999999987665 111 125899999999999
Q ss_pred CCCCcccccCCC-ccEEeCCCCccccCCccccCCC--CCcEEEecCCcCCCCChHH---Hh--cCCCCCEEECCCCCCCc
Q 014560 209 SAIPSEIWEAGE-ITKLDLSRNSIQELPPELSSCA--SLQTLILSRNKIKDWPDAI---LT--SLSSLSCLKLDNNPLRQ 280 (422)
Q Consensus 209 ~~~~~~~~~~~~-L~~L~l~~~~l~~~~~~~~~~~--~L~~L~l~~~~~~~~~~~~---~~--~~~~L~~L~l~~~~~~~ 280 (422)
..+|..+..+++ |+.|++++|.+..+|..+...+ +|+.|++++|.+....+.. +. .+++|+.|++++|.+..
T Consensus 608 ~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~ 687 (876)
T 4ecn_A 608 EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQK 687 (876)
T ss_dssp SCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCS
T ss_pred ccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCc
Confidence 999999888888 9999999999999998777665 4999999999887643321 11 34589999999999998
Q ss_pred CCCCCCCCCCCccEEEccCCcCCCCCCCCCC-------CCccCceEEeCCCcCccCCcccc--cCCCCcEEECCCCCCcc
Q 014560 281 VPSDGFKDIPMLQILDLSYNIASLPENPPFS-------SLPHLQELYLRRMQLREAPTDIL--RLQQLRILDLSQNSLQS 351 (422)
Q Consensus 281 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~-------~~~~L~~L~l~~~~i~~l~~~~~--~~~~L~~l~l~~n~l~~ 351 (422)
++...+..+++|+.|++++|.+.......+. ++++|+.|++++|.++.+|..+. .+++|+.|++++|.++.
T Consensus 688 lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~ 767 (876)
T 4ecn_A 688 FPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSS 767 (876)
T ss_dssp CCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSS
T ss_pred cCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCc
Confidence 8877666899999999999999865554443 33499999999999999999887 89999999999999999
Q ss_pred cCccCcCCCCCCEEeCCC------CCCc-ccCCccccCCccccEEEccCCCCCccchHHH
Q 014560 352 IPEGFKNLTSLTELDLSD------NNIS-ALPPELGLLEPSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 352 l~~~~~~~~~L~~L~l~~------n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~ 404 (422)
+|..+..+++|+.|++++ |.+. .+|..+..+ ++|+.|++++|++..|+..++
T Consensus 768 lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L-~~L~~L~Ls~N~L~~Ip~~l~ 826 (876)
T 4ecn_A 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTC-PSLIQLQIGSNDIRKVDEKLT 826 (876)
T ss_dssp CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGC-SSCCEEECCSSCCCBCCSCCC
T ss_pred cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcC-CCCCEEECCCCCCCccCHhhc
Confidence 999999999999999977 5554 777777777 999999999999998888754
No 10
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2.2e-38 Score=317.02 Aligned_cols=393 Identities=24% Similarity=0.261 Sum_probs=297.8
Q ss_pred CceeeccCCcceecChhH---HhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcC
Q 014560 1 MSKLDVEGNKLTVLSNNL---IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMG 77 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~---~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~ 77 (422)
|++|++++|+++...... +.++++|++|++++|.+..... +..+++|++|++++|.+...++.+.++++|++|+++
T Consensus 153 L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls 231 (768)
T 3rgz_A 153 LEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDIS 231 (768)
T ss_dssp CSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB-CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECC
T ss_pred CCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC-cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECc
Confidence 456666666666555444 5666777777777776654322 267788888888888887654448889999999999
Q ss_pred CCcCc-cCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCC-CCCcccccc-CCccEEEcCCCccccccc
Q 014560 78 NNALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLS-GLPPEIGKM-TTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 78 ~~~i~-~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~-~~~~~~~~l-~~L~~L~l~~~~~~~~~~ 154 (422)
+|.++ .+|..+..+++|++|++++|.+....+......|++|++++|.+. .+|..+... ++|++|++++|.++....
T Consensus 232 ~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p 311 (768)
T 3rgz_A 232 GNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311 (768)
T ss_dssp SSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCC
T ss_pred CCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccc
Confidence 99888 568888999999999999998875444333334888888888877 467766654 888889888887763322
Q ss_pred cccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcccccCC-CccEEeCCCCccc
Q 014560 155 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAG-EITKLDLSRNSIQ 232 (422)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~-~L~~L~l~~~~l~ 232 (422)
..+.. +. .+..+......... ............++.+++++|.+. .+|..+..++ +|++|++++|.+.
T Consensus 312 ~~~~~--------l~-~L~~L~L~~n~l~~-~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~ 381 (768)
T 3rgz_A 312 PFFGS--------CS-LLESLALSSNNFSG-ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFS 381 (768)
T ss_dssp GGGGG--------CT-TCCEEECCSSEEEE-ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEE
T ss_pred hHHhc--------CC-CccEEECCCCcccC-cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcC
Confidence 11110 00 00111111000000 000011223467899999998887 7787777776 8999999999887
Q ss_pred c-CCccccC--CCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCC
Q 014560 233 E-LPPELSS--CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPP 309 (422)
Q Consensus 233 ~-~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~ 309 (422)
. ++..+.. +++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.+..+..
T Consensus 382 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 461 (768)
T 3rgz_A 382 GPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQE 461 (768)
T ss_dssp EECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGG
T ss_pred CCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHH
Confidence 5 6666555 789999999999988766666889999999999999998777777899999999999999999888888
Q ss_pred CCCCccCceEEeCCCcCc-cCCcccccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEeCCCCCCc-ccCCccccCCccc
Q 014560 310 FSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNIS-ALPPELGLLEPSL 386 (422)
Q Consensus 310 ~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L 386 (422)
+..+++|+.|++++|.+. .+|..+.++++|+.|++++|.++ .+|.++..+++|+.|++++|+++ .+|..+..+ ++|
T Consensus 462 ~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l-~~L 540 (768)
T 3rgz_A 462 LMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC-RSL 540 (768)
T ss_dssp GGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGC-TTC
T ss_pred HcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCC-CCC
Confidence 999999999999999998 67888999999999999999998 67999999999999999999998 777777777 999
Q ss_pred cEEEccCCCCC-ccchHHHh
Q 014560 387 QALRLDGNPLR-SIRRTILD 405 (422)
Q Consensus 387 ~~l~l~~n~~~-~i~~~~~~ 405 (422)
++|++++|++. .++..++.
T Consensus 541 ~~L~Ls~N~l~g~ip~~~~~ 560 (768)
T 3rgz_A 541 IWLDLNTNLFNGTIPAAMFK 560 (768)
T ss_dssp CEEECCSSEEESBCCGGGGT
T ss_pred CEEECCCCccCCcCChHHhc
Confidence 99999999987 67777665
No 11
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.1e-37 Score=302.96 Aligned_cols=154 Identities=27% Similarity=0.378 Sum_probs=129.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCCC-CCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~ 78 (422)
+++|++++|++..++..+|.++++|++|++++|.+..+ +..+.++++|++|++++|.++.+|. .|.++++|++|++++
T Consensus 27 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~ 106 (680)
T 1ziw_A 27 ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106 (680)
T ss_dssp CSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCS
T ss_pred CcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCC
Confidence 57899999999999988899999999999999999776 6788999999999999999998876 689999999999999
Q ss_pred CcCccCc-hhhhCCCCCcEEEccCCccccccccc-ccce-ecEEEcCCCCCCCCCcc-c--cccCCccEEEcCCCccccc
Q 014560 79 NALSALP-AELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSNNSLSGLPPE-I--GKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 79 ~~i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~-L~~L~l~~~~~~~~~~~-~--~~l~~L~~L~l~~~~~~~~ 152 (422)
|.+..++ ..|.++++|++|++++|.+...+... ...+ |+.|++++|.++.++.. + ..+++|++|++++|.++.+
T Consensus 107 n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 186 (680)
T 1ziw_A 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEF 186 (680)
T ss_dssp SCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCB
T ss_pred CccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCccccc
Confidence 9998775 57899999999999999888665443 3333 99999999988875443 3 3558899999999887765
Q ss_pred cc
Q 014560 153 RS 154 (422)
Q Consensus 153 ~~ 154 (422)
..
T Consensus 187 ~~ 188 (680)
T 1ziw_A 187 SP 188 (680)
T ss_dssp CT
T ss_pred Ch
Confidence 44
No 12
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.5e-37 Score=304.18 Aligned_cols=405 Identities=24% Similarity=0.265 Sum_probs=241.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCch-hhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~ 78 (422)
|++|++++|++..++..+|.++++|++|++++|.+..++. .|.++++|++|++++|.+..++ ..|.++++|++|++++
T Consensus 51 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 130 (680)
T 1ziw_A 51 LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSH 130 (680)
T ss_dssp CSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCS
T ss_pred CcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCC
Confidence 5778888888887777778888888888888888877764 5777888888888888777664 5677777888888877
Q ss_pred CcCccC-chhhhCCCCCcEEEccCCcccccccccc---c-ceecEEEcCCCCCCCCC-----------------------
Q 014560 79 NALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEAC---Q-LRLSVLDLSNNSLSGLP----------------------- 130 (422)
Q Consensus 79 ~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~---~-~~L~~L~l~~~~~~~~~----------------------- 130 (422)
|.+..+ +..+.++++|++|++++|.++.++.... . ..|+.|++++|.+..++
T Consensus 131 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~ 210 (680)
T 1ziw_A 131 NGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPS 210 (680)
T ss_dssp SCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHH
T ss_pred CcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChh
Confidence 777644 4556667777777777776665443211 1 22555555555443311
Q ss_pred -----------------------------ccccccC--CccEEEcCCCccccccccccCC-CChHHHHHHHccC------
Q 014560 131 -----------------------------PEIGKMT--TLRKLLLTGNPLRTLRSSLVNG-PTPALLKYLRSRL------ 172 (422)
Q Consensus 131 -----------------------------~~~~~l~--~L~~L~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~~------ 172 (422)
..+..++ +|+.|++++|.+..++...+.. ...+.+..-...+
T Consensus 211 ~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 290 (680)
T 1ziw_A 211 LTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSH 290 (680)
T ss_dssp HHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTT
T ss_pred hHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChh
Confidence 1122222 2555555555444333221110 0000000000000
Q ss_pred -----CCC---ccccccc-------hhhhHHHhhhccccc----------------------------------------
Q 014560 173 -----PEN---EDSEAST-------TKEDLITMATRLSVT---------------------------------------- 197 (422)
Q Consensus 173 -----~~~---~~~~~~~-------~~~~~~~~~~~~~~~---------------------------------------- 197 (422)
..+ ....... ...............
T Consensus 291 ~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l 370 (680)
T 1ziw_A 291 SLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTL 370 (680)
T ss_dssp TTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEE
T ss_pred hhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhc
Confidence 000 0000000 000000000111123
Q ss_pred ------------cceeeccCCCCCCC-CcccccCCCccEEeCCCCcccc-CC-ccccCCCCCcEEEecCCcCCCCChHHH
Q 014560 198 ------------SKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQE-LP-PELSSCASLQTLILSRNKIKDWPDAIL 262 (422)
Q Consensus 198 ------------l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~ 262 (422)
++.+++++|.+..+ +..+..+++|+.|++++|.+.. ++ ..+..+++|+.+++++|.+....+..+
T Consensus 371 ~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 450 (680)
T 1ziw_A 371 TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSF 450 (680)
T ss_dssp CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTT
T ss_pred chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhh
Confidence 33333344433322 2233334455555555555432 33 234455555555555555555444445
Q ss_pred hcCCCCCEEECCCCCCCc--CCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc---------
Q 014560 263 TSLSSLSCLKLDNNPLRQ--VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT--------- 331 (422)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~--------- 331 (422)
..+++|+.|++++|.+.. ..+..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++.++.
T Consensus 451 ~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 530 (680)
T 1ziw_A 451 ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIY 530 (680)
T ss_dssp TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCC
T ss_pred hcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcch
Confidence 555566666665555432 233446777888888888888887777778888888888888888775422
Q ss_pred ccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHh
Q 014560 332 DILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 332 ~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
.+.++++|+.|++++|.++.+|. .|.++++|+.|++++|+++.+|...+..+++|++|++++|+++.+++..|.
T Consensus 531 ~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 605 (680)
T 1ziw_A 531 FLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFG 605 (680)
T ss_dssp TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHH
T ss_pred hhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhc
Confidence 25678889999999998888875 488899999999999999988888766668999999999999988888765
No 13
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=6.5e-38 Score=313.62 Aligned_cols=384 Identities=27% Similarity=0.276 Sum_probs=242.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceeccccccc-CCchhhhccccCCeEeccCCcccc-CCCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSRLIRLDLHQNRILS-IPSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~L~~L~l~~~~~~~-l~~~~~~~~~L~~L~l~~ 78 (422)
|++|++++|++...... +.++++|++|++++|.+. .++..+..+++|++|++++|.+.. +|.. .+++|++|++++
T Consensus 202 L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~ 278 (768)
T 3rgz_A 202 LEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278 (768)
T ss_dssp CCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCS
T ss_pred CCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcC
Confidence 57788888887764444 778888888888888886 446777778888888888777663 3322 566666666666
Q ss_pred CcCc-cCchhhhCC-CCCcEEEccCCccc-ccccccccce-ecEEEcCCCCCC-CCCcc-ccccCCccEEEcCCCccc-c
Q 014560 79 NALS-ALPAELGKL-SKLGTLDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLS-GLPPE-IGKMTTLRKLLLTGNPLR-T 151 (422)
Q Consensus 79 ~~i~-~l~~~l~~~-~~L~~L~l~~~~~~-~l~~~~~~~~-L~~L~l~~~~~~-~~~~~-~~~l~~L~~L~l~~~~~~-~ 151 (422)
|.+. .+|..+... ++|++|++++|.++ .++..+.... |+.|++++|.+. .+|.. +..+++|++|++++|.++ .
T Consensus 279 n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~ 358 (768)
T 3rgz_A 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGE 358 (768)
T ss_dssp SEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEEC
T ss_pred CccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcc
Confidence 6665 555555443 66666666666665 3333333333 666666666655 24443 556666666666666553 1
Q ss_pred ccccccCCCChHHHHHHHccC--------------------------CCCccccccchhhhHHHhhhccccccceeeccC
Q 014560 152 LRSSLVNGPTPALLKYLRSRL--------------------------PENEDSEASTTKEDLITMATRLSVTSKELSLEG 205 (422)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~ 205 (422)
++. .+..+...+ ..+...... ..............++.+++++
T Consensus 359 ~p~---------~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~p~~l~~l~~L~~L~Ls~ 427 (768)
T 3rgz_A 359 LPE---------SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNG--FTGKIPPTLSNCSELVSLHLSF 427 (768)
T ss_dssp CCT---------THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSE--EEEECCGGGGGCTTCCEEECCS
T ss_pred ccH---------HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCc--cccccCHHHhcCCCCCEEECcC
Confidence 111 111111000 000000000 0000111222335677888888
Q ss_pred CCCC-CCCcccccCCCccEEeCCCCcccc-CCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC
Q 014560 206 MNLS-AIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 283 (422)
Q Consensus 206 ~~~~-~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 283 (422)
|.+. .+|..+..+++|+.|++++|.+.. +|..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+
T Consensus 428 N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p 507 (768)
T 3rgz_A 428 NYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIP 507 (768)
T ss_dssp SEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred CcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCC
Confidence 7776 566677777888888888888774 67778888888888888888886666667888888888888888886666
Q ss_pred CCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc-cCCcc------------------------------
Q 014560 284 DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTD------------------------------ 332 (422)
Q Consensus 284 ~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~------------------------------ 332 (422)
..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.+. .+|..
T Consensus 508 ~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 508 KWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred hHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccc
Confidence 66788888888888888888777777777788888777777554 33322
Q ss_pred ----------------------------------------cccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEeCCCCC
Q 014560 333 ----------------------------------------ILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNN 371 (422)
Q Consensus 333 ----------------------------------------~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~ 371 (422)
+..+++|+.|++++|.++ .+|..+.++++|+.|++++|.
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~ 667 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND 667 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSC
T ss_pred cccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCc
Confidence 122345666666666665 456666666666666666666
Q ss_pred Cc-ccCCccccCCccccEEEccCCCCCcc
Q 014560 372 IS-ALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 372 l~-~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
++ .+|..+..+ ++|++|++++|+++..
T Consensus 668 l~g~ip~~l~~L-~~L~~LdLs~N~l~g~ 695 (768)
T 3rgz_A 668 ISGSIPDEVGDL-RGLNILDLSSNKLDGR 695 (768)
T ss_dssp CCSCCCGGGGGC-TTCCEEECCSSCCEEC
T ss_pred cCCCCChHHhCC-CCCCEEECCCCcccCc
Confidence 65 555555555 6666666666666533
No 14
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=1.3e-36 Score=287.46 Aligned_cols=346 Identities=22% Similarity=0.337 Sum_probs=293.6
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
+++|+++++.+..++. +..+++|++|++++|.+..++. +..+++|++|++++|.+..++. +.++++|++|++++|.
T Consensus 48 l~~L~l~~~~i~~l~~--~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 48 VTTLQADRLGIKSIDG--VEYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp CCEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred ccEEecCCCCCccCcc--hhhhcCCCEEECCCCccCCchh-hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCC
Confidence 5789999999999886 8899999999999999988876 8899999999999999998866 8999999999999999
Q ss_pred CccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCC
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 160 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 160 (422)
+..++. +.++++|++|++++|.+..++......+|+.|+++ +.+...+. +..+++|+.|++++|.+..++.
T Consensus 124 l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~------ 194 (466)
T 1o6v_A 124 ITDIDP-LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSDISV------ 194 (466)
T ss_dssp CCCCGG-GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCCCGG------
T ss_pred CCCChH-HcCCCCCCEEECCCCccCCChhhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCCChh------
Confidence 998865 89999999999999999887754333449999986 45555543 8899999999999998765421
Q ss_pred ChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccC
Q 014560 161 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS 240 (422)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 240 (422)
.....+++.++++++.+..++. +..+++|++|++++|.++.++ .+..
T Consensus 195 -------------------------------l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~ 241 (466)
T 1o6v_A 195 -------------------------------LAKLTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLKDIG-TLAS 241 (466)
T ss_dssp -------------------------------GGGCTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG-GGGG
T ss_pred -------------------------------hccCCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcccch-hhhc
Confidence 1123578999999998887665 666889999999999988774 5788
Q ss_pred CCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEE
Q 014560 241 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 320 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (422)
+++|+.|++++|.+...++ +..+++|+.|++++|.+..+++ +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 242 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 315 (466)
T 1o6v_A 242 LTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLT 315 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEE
T ss_pred CCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEE
Confidence 9999999999999888765 6889999999999999988766 7889999999999999887654 78899999999
Q ss_pred eCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccc
Q 014560 321 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 321 l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
+++|.++.++. +..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++. +..+ ++|+.|++++|+++.++
T Consensus 316 L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~l-~~L~~L~l~~n~~~~~p 391 (466)
T 1o6v_A 316 LYFNNISDISP-VSSLTKLQRLFFYNNKVSDVS-SLANLTNINWLSAGHNQISDLTP-LANL-TRITQLGLNDQAWTNAP 391 (466)
T ss_dssp CCSSCCSCCGG-GGGCTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCCBCGG-GTTC-TTCCEEECCCEEEECCC
T ss_pred CcCCcCCCchh-hccCccCCEeECCCCccCCch-hhccCCCCCEEeCCCCccCccch-hhcC-CCCCEEeccCCcccCCc
Confidence 99999987765 778999999999999999874 68889999999999999987665 5555 99999999999988765
Q ss_pred hH
Q 014560 401 RT 402 (422)
Q Consensus 401 ~~ 402 (422)
..
T Consensus 392 ~~ 393 (466)
T 1o6v_A 392 VN 393 (466)
T ss_dssp BC
T ss_pred hh
Confidence 44
No 15
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=3.5e-37 Score=296.05 Aligned_cols=390 Identities=21% Similarity=0.208 Sum_probs=239.5
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~ 79 (422)
|++|++++|++..++..+|.++++|++|++++|.++.+ |..|.++++|++|++++|.++.+|.. .+++|++|++++|
T Consensus 23 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~L~~L~L~~N 100 (520)
T 2z7x_B 23 TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCH--PTVNLKHLDLSFN 100 (520)
T ss_dssp CSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCCCSEEECCSS
T ss_pred ccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceeecCcc--ccCCccEEeccCC
Confidence 45677777777766666677777777777777777655 45666777777777777776666554 5677777777777
Q ss_pred cCcc--CchhhhCCCCCcEEEccCCcccccccccccc-ee--cEEEcCCCCC--CC-CCcccc-----------------
Q 014560 80 ALSA--LPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RL--SVLDLSNNSL--SG-LPPEIG----------------- 134 (422)
Q Consensus 80 ~i~~--l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-~L--~~L~l~~~~~--~~-~~~~~~----------------- 134 (422)
.++. +|..++++++|++|++++|.+.... +... .| +.|++++|.+ .. .|..+.
T Consensus 101 ~l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~--~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~ 178 (520)
T 2z7x_B 101 AFDALPICKEFGNMSQLKFLGLSTTHLEKSS--VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEF 178 (520)
T ss_dssp CCSSCCCCGGGGGCTTCCEEEEEESSCCGGG--GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCC
T ss_pred ccccccchhhhccCCcceEEEecCcccchhh--ccccccceeeEEEeecccccccccccccccccccceEEEEeccCcch
Confidence 6664 4566777777777777776665411 1111 13 6666666655 22 222222
Q ss_pred ---------ccCCccEEEcCCCc-------cccccccccCCC------------ChHHHHHHH-----ccCCCCcccccc
Q 014560 135 ---------KMTTLRKLLLTGNP-------LRTLRSSLVNGP------------TPALLKYLR-----SRLPENEDSEAS 181 (422)
Q Consensus 135 ---------~l~~L~~L~l~~~~-------~~~~~~~~~~~~------------~~~~l~~~~-----~~~~~~~~~~~~ 181 (422)
.+++|+.+++++|. +........... ....+.... ..+..+......
T Consensus 179 ~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 23344444444332 000000000000 000000000 000000000000
Q ss_pred ---chhhhHHHhhhccccccceeeccCCCCCCCC-cccccC---CCccEEeCCCCccccCCccccCCCCCcEEEecCCcC
Q 014560 182 ---TTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEA---GEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 254 (422)
Q Consensus 182 ---~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~---~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 254 (422)
..+.............++.+++..+.+ .+| ..+... .+++.|++++|.+..++. +..+++|++|++++|.+
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~Ls~n~l 336 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC-PSKISPFLHLDFSNNLL 336 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESSCCCCCCC-CSSCCCCCEEECCSSCC
T ss_pred ccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCCccccccc-hhhCCcccEEEeECCcc
Confidence 000000000001122344444444444 333 122221 456666666666654431 26788999999999999
Q ss_pred CCCChHHHhcCCCCCEEECCCCCCCcCCC--CCCCCCCCccEEEccCCcCCC-CCCCCCCCCccCceEEeCCCcCc-cCC
Q 014560 255 KDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASL-PENPPFSSLPHLQELYLRRMQLR-EAP 330 (422)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~-~l~ 330 (422)
.+..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+.+ .....+..+++|+.|++++|.++ .++
T Consensus 337 ~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~ 416 (520)
T 2z7x_B 337 TDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416 (520)
T ss_dssp CTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGG
T ss_pred ChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchh
Confidence 88666667889999999999999886432 347789999999999999987 44455788899999999999886 444
Q ss_pred cccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCc
Q 014560 331 TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 331 ~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
..+. ++|+.|++++|.++.+|..+..+++|+.|++++|+++.+|...+..+++|++|++++|++..
T Consensus 417 ~~l~--~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 417 RCLP--PRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp GSCC--TTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred hhhc--ccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcc
Confidence 4433 79999999999999999988899999999999999999998844444999999999999874
No 16
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.7e-37 Score=298.96 Aligned_cols=395 Identities=21% Similarity=0.222 Sum_probs=245.8
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccCCCC-CccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~ 78 (422)
|++|++++|+++.++..+|.++++|++|++++|.++.++ ..|.++++|++|++++|.++.++.. |.++++|++|++++
T Consensus 28 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 107 (549)
T 2z81_A 28 MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107 (549)
T ss_dssp CCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTT
T ss_pred ccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCC
Confidence 578888888888887667888888999999888887664 6788888899999988888877554 88888899999988
Q ss_pred CcCcc--CchhhhCCCCCcEEEccCCc-cccccc-ccccce-ecEEEcCCCCCCC-CCccccccCCccEEEcCCCccccc
Q 014560 79 NALSA--LPAELGKLSKLGTLDLHSNQ-LKEYCV-EACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 79 ~~i~~--l~~~l~~~~~L~~L~l~~~~-~~~l~~-~~~~~~-L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~ 152 (422)
|.++. +|..+.++++|++|++++|. +..++. .+...+ |++|++++|.+.+ .+..+..+++|++|++++|.+..+
T Consensus 108 n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~ 187 (549)
T 2z81_A 108 NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFL 187 (549)
T ss_dssp CCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTH
T ss_pred CcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccccc
Confidence 88874 45678888888999888887 556653 333333 8888888888877 666777777777777777665433
Q ss_pred cccccCC-CChHHHHHHHccCC-----------------CCcccccc--chhhhHHHhhhccccccceeeccCCCCCCCC
Q 014560 153 RSSLVNG-PTPALLKYLRSRLP-----------------ENEDSEAS--TTKEDLITMATRLSVTSKELSLEGMNLSAIP 212 (422)
Q Consensus 153 ~~~~~~~-~~~~~l~~~~~~~~-----------------~~~~~~~~--~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~ 212 (422)
+...+.. ...+.+..-...+. .+...... ................++.++++++.+..+.
T Consensus 188 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 188 LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 2211000 00000000000000 00000000 0011112222233456677777666543221
Q ss_pred cc-------c-----------------------------ccCCCccEEeCCCCccccCCccc-cCCCCCcEEEecCCcCC
Q 014560 213 SE-------I-----------------------------WEAGEITKLDLSRNSIQELPPEL-SSCASLQTLILSRNKIK 255 (422)
Q Consensus 213 ~~-------~-----------------------------~~~~~L~~L~l~~~~l~~~~~~~-~~~~~L~~L~l~~~~~~ 255 (422)
.. + ....+++.|++++|.+..+|..+ ..+++|+.|++++|.+.
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~ 347 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccc
Confidence 10 0 11245777777777777777664 46778888888888776
Q ss_pred CCCh---HHHhcCCCCCEEECCCCCCCcCCC--CCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCC
Q 014560 256 DWPD---AILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP 330 (422)
Q Consensus 256 ~~~~---~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~ 330 (422)
+..+ ..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.++.. +..+..+++|++|++++|.++.++
T Consensus 348 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~~~~L~~L~Ls~N~l~~l~ 426 (549)
T 2z81_A 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQWPEKMRFLNLSSTGIRVVK 426 (549)
T ss_dssp HHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCCCCTTCCEEECTTSCCSCCC
T ss_pred cccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccC-ChhhcccccccEEECCCCCccccc
Confidence 5322 124567788888888887776542 3366778888888888877743 445677788888888888877665
Q ss_pred cccc------------------cCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEcc
Q 014560 331 TDIL------------------RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLD 392 (422)
Q Consensus 331 ~~~~------------------~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~ 392 (422)
..+. .+++|+.|++++|.++.+|. ...+++|+.|++++|+++.++...+..+++|++|+++
T Consensus 427 ~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~ 505 (549)
T 2z81_A 427 TCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLH 505 (549)
T ss_dssp TTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECC
T ss_pred chhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEec
Confidence 4432 34555555555555555554 2345555555555555555544432222556666666
Q ss_pred CCCCC
Q 014560 393 GNPLR 397 (422)
Q Consensus 393 ~n~~~ 397 (422)
+|++.
T Consensus 506 ~N~~~ 510 (549)
T 2z81_A 506 TNPWD 510 (549)
T ss_dssp SSCBC
T ss_pred CCCcc
Confidence 65553
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-36 Score=287.79 Aligned_cols=361 Identities=22% Similarity=0.244 Sum_probs=287.8
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccc-cC-CCCCccCCCCCEEEcCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRIL-SI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~-~l-~~~~~~~~~L~~L~l~~ 78 (422)
+.++.+++.+..+|. + .++|++|++++|.++.+ +..+.++++|++|++++|.+. .+ +..|.++++|++|++++
T Consensus 13 ~~~~c~~~~l~~lp~--l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 13 YNAICINRGLHQVPE--L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TEEECCSSCCSSCCC--C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred cccCcCCCCcccCCC--C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 357788888888886 2 27899999999999776 678899999999999999876 44 56788999999999999
Q ss_pred CcCccC-chhhhCCCCCcEEEccCCcccc-cccc--cccc-eecEEEcCCCCCCCC-Ccc-ccccCCccEEEcCCCcccc
Q 014560 79 NALSAL-PAELGKLSKLGTLDLHSNQLKE-YCVE--ACQL-RLSVLDLSNNSLSGL-PPE-IGKMTTLRKLLLTGNPLRT 151 (422)
Q Consensus 79 ~~i~~l-~~~l~~~~~L~~L~l~~~~~~~-l~~~--~~~~-~L~~L~l~~~~~~~~-~~~-~~~l~~L~~L~l~~~~~~~ 151 (422)
|.+..+ |..+..+++|++|++++|.++. ++.. +... .|+.|++++|.+..+ +.. +..+++|++|++++|.++.
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 998865 7789999999999999999875 2322 3333 399999999998885 444 7889999999999998865
Q ss_pred ccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcc---------cccCCCcc
Q 014560 152 LRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE---------IWEAGEIT 222 (422)
Q Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~---------~~~~~~L~ 222 (422)
+....+.. .....++.++++++.+..++.. +...++|+
T Consensus 169 ~~~~~l~~---------------------------------l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~ 215 (455)
T 3v47_A 169 ICEEDLLN---------------------------------FQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSIT 215 (455)
T ss_dssp CCTTTSGG---------------------------------GTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEE
T ss_pred cChhhhhc---------------------------------cccccccccccccCcccccchhhccccccccccccceee
Confidence 43322210 0114678888888887765543 23457899
Q ss_pred EEeCCCCcccc-CCcccc---CCCCCcEEEecCCcCCC----------CChHHHhc--CCCCCEEECCCCCCCcCCCCCC
Q 014560 223 KLDLSRNSIQE-LPPELS---SCASLQTLILSRNKIKD----------WPDAILTS--LSSLSCLKLDNNPLRQVPSDGF 286 (422)
Q Consensus 223 ~L~l~~~~l~~-~~~~~~---~~~~L~~L~l~~~~~~~----------~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~ 286 (422)
+|++++|.+.. .+..+. ..++|+.++++++.... .....+.. .++|+.+++++|.+....+..+
T Consensus 216 ~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 295 (455)
T 3v47_A 216 TLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVF 295 (455)
T ss_dssp EEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTT
T ss_pred eEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhhc
Confidence 99999998875 333333 34789999998874332 11222222 3689999999999999888889
Q ss_pred CCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCCCCCCE
Q 014560 287 KDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTE 364 (422)
Q Consensus 287 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~ 364 (422)
..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.+ +..+.++++|+.|++++|.++.+ |..+..+++|++
T Consensus 296 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 375 (455)
T 3v47_A 296 SHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKE 375 (455)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred ccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccE
Confidence 9999999999999999988888899999999999999999976 45678899999999999999977 778999999999
Q ss_pred EeCCCCCCcccCCccccCCccccEEEccCCCCCcc
Q 014560 365 LDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 365 L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
|++++|+++.++...+..+++|++|++++|++..-
T Consensus 376 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~ 410 (455)
T 3v47_A 376 LALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 410 (455)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred EECCCCccccCCHhHhccCCcccEEEccCCCcccC
Confidence 99999999999887766559999999999998754
No 18
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=8.8e-37 Score=308.48 Aligned_cols=303 Identities=21% Similarity=0.212 Sum_probs=218.2
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccc-cCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMG 77 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i-~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~ 77 (422)
+++|||++|.|+.+....|.++++|++|++++|.. ..+ +.+|.++++|++|++++|.+..+ |+.|.++++|++|+++
T Consensus 26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls 105 (844)
T 3j0a_A 26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLY 105 (844)
T ss_dssp CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECT
T ss_pred cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCc
Confidence 57899999999988777799999999999998844 555 67888999999999999988866 7888999999999999
Q ss_pred CCcCcc-Cchh--hhCCCCCcEEEccCCccccccc--ccccce-ecEEEcCCCCCCC-CCcccccc--CCccEEEcCCCc
Q 014560 78 NNALSA-LPAE--LGKLSKLGTLDLHSNQLKEYCV--EACQLR-LSVLDLSNNSLSG-LPPEIGKM--TTLRKLLLTGNP 148 (422)
Q Consensus 78 ~~~i~~-l~~~--l~~~~~L~~L~l~~~~~~~l~~--~~~~~~-L~~L~l~~~~~~~-~~~~~~~l--~~L~~L~l~~~~ 148 (422)
+|.+.. ++.. +.++++|++|++++|.+..+.. .+...+ |+.|++++|.+.. .+..+..+ ++|+.|++++|.
T Consensus 106 ~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~ 185 (844)
T 3j0a_A 106 FCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANS 185 (844)
T ss_dssp TCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSB
T ss_pred CCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCc
Confidence 998874 4554 8889999999999998886543 344444 9999999998877 55666666 788888888887
Q ss_pred cccccccccCCCChHHHHH--HHc-cCCCCcccccc--ch-----------------------------hhhHHHhhhcc
Q 014560 149 LRTLRSSLVNGPTPALLKY--LRS-RLPENEDSEAS--TT-----------------------------KEDLITMATRL 194 (422)
Q Consensus 149 ~~~~~~~~~~~~~~~~l~~--~~~-~~~~~~~~~~~--~~-----------------------------~~~~~~~~~~~ 194 (422)
+.......+... +..+.. +.. .+......... .. ...........
T Consensus 186 l~~~~~~~~~~~-~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~ 264 (844)
T 3j0a_A 186 LYSRVSVDWGKC-MNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLA 264 (844)
T ss_dssp SCCCCCCCCCSS-SCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTT
T ss_pred cccccccchhhc-CCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccc
Confidence 654222111000 000000 000 00000000000 00 00000000111
Q ss_pred ccccceeeccCCCCCCC-CcccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEE
Q 014560 195 SVTSKELSLEGMNLSAI-PSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 272 (422)
Q Consensus 195 ~~~l~~l~l~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 272 (422)
..+++.++++++.+..+ +..+..+++|+.|++++|.+..+ +..|..+++|+.|++++|.+....+..+..+++|+.|+
T Consensus 265 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 344 (844)
T 3j0a_A 265 RSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYID 344 (844)
T ss_dssp TSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEE
T ss_pred cCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEE
Confidence 25788899998888755 44456688999999999998875 45688899999999999999888777788899999999
Q ss_pred CCCCCCCcCCCCCCCCCCCccEEEccCCcCCC
Q 014560 273 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 304 (422)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 304 (422)
+++|.+..+++..|..+++|+.|++++|.+++
T Consensus 345 L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 345 LQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp CCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC
T ss_pred CCCCCCCccChhhhcCCCCCCEEECCCCCCCc
Confidence 99999988888888999999999999987764
No 19
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=5.6e-36 Score=289.74 Aligned_cols=371 Identities=23% Similarity=0.300 Sum_probs=265.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCcccc--CCCCCccCCCCCEEEcC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILS--IPSSISGCCSLAEFYMG 77 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~--l~~~~~~~~~L~~L~l~ 77 (422)
|++|++++|++..++..+|.++++|++|++++|.+..++ ..+.++++|++|++++|.++. .|..+.++++|++|+++
T Consensus 52 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~ 131 (549)
T 2z81_A 52 LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIG 131 (549)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEE
T ss_pred ccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECC
Confidence 689999999999999888999999999999999998886 459999999999999999985 46789999999999999
Q ss_pred CCc-CccCc-hhhhCCCCCcEEEccCCccccc-ccccccce-ecEEEcCCCCCCCCCccc-cccCCccEEEcCCCccccc
Q 014560 78 NNA-LSALP-AELGKLSKLGTLDLHSNQLKEY-CVEACQLR-LSVLDLSNNSLSGLPPEI-GKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 78 ~~~-i~~l~-~~l~~~~~L~~L~l~~~~~~~l-~~~~~~~~-L~~L~l~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~ 152 (422)
+|. +..+| ..+..+++|++|++++|.++.. +..+...+ |+.|+++++.+..++..+ ..+++|++|++++|.++.+
T Consensus 132 ~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~ 211 (549)
T 2z81_A 132 NVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARF 211 (549)
T ss_dssp ESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTC
T ss_pred CCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccc
Confidence 997 66775 5799999999999999998853 44444443 777888777766654443 4567777777777766543
Q ss_pred cccccC-------------------CCChHHHHHHHccCCCCc---ccccc-----------------------------
Q 014560 153 RSSLVN-------------------GPTPALLKYLRSRLPENE---DSEAS----------------------------- 181 (422)
Q Consensus 153 ~~~~~~-------------------~~~~~~l~~~~~~~~~~~---~~~~~----------------------------- 181 (422)
+..... +..+..+........... .....
T Consensus 212 ~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~ 291 (549)
T 2z81_A 212 QFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRL 291 (549)
T ss_dssp CCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESC
T ss_pred cccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhccccccccccc
Confidence 210000 000000100000000000 00000
Q ss_pred chhh----hHHHhhhccccccceeeccCCCCCCCCcccc-cCCCccEEeCCCCcccc-CC---ccccCCCCCcEEEecCC
Q 014560 182 TTKE----DLITMATRLSVTSKELSLEGMNLSAIPSEIW-EAGEITKLDLSRNSIQE-LP---PELSSCASLQTLILSRN 252 (422)
Q Consensus 182 ~~~~----~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~-~~~~L~~L~l~~~~l~~-~~---~~~~~~~~L~~L~l~~~ 252 (422)
.... ............++.++++++.+..+|..++ .+++|++|++++|.+.. +| ..+..+++|+.|++++|
T Consensus 292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 371 (549)
T 2z81_A 292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN 371 (549)
T ss_dssp BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS
T ss_pred ccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCC
Confidence 0000 0000111223467888888888888887764 57888888888888765 22 23567788888888888
Q ss_pred cCCCCCh--HHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCC-----------------CCCCC
Q 014560 253 KIKDWPD--AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENP-----------------PFSSL 313 (422)
Q Consensus 253 ~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~-----------------~~~~~ 313 (422)
.+..++. ..+..+++|+.|++++|.+..++.. +..+++|+.|++++|.+...... ....+
T Consensus 372 ~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~~~~L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l 450 (549)
T 2z81_A 372 HLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFL 450 (549)
T ss_dssp CCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSC-CCCCTTCCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCC
T ss_pred cccccccchhhhhcCCCCCEEECCCCCCccCChh-hcccccccEEECCCCCcccccchhcCCceEEECCCCChhhhcccC
Confidence 8877653 4467788888888888888776654 66677777777777766543221 12367
Q ss_pred ccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCCc
Q 014560 314 PHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 314 ~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~ 373 (422)
++|++|++++|.++.+|. ...+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 451 ~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 510 (549)
T 2z81_A 451 PRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510 (549)
T ss_dssp TTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBC
T ss_pred ChhcEEECCCCccCcCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCcc
Confidence 899999999999998887 4678999999999999998754 5899999999999999975
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=4.5e-36 Score=291.81 Aligned_cols=395 Identities=23% Similarity=0.241 Sum_probs=284.2
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 79 (422)
+.++.++.++..+|.. + .+.+++|++++|.++.++ .+|.++++|++|++++|.++.+ +..|.++++|++|++++|
T Consensus 10 ~~~~c~~~~l~~ip~~-l--~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n 86 (570)
T 2z63_A 10 ITYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (570)
T ss_dssp TEEECCSSCCSSCCSS-S--CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred cEEEeCCCCccccCCC-c--cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCC
Confidence 3577888888888875 2 357999999999998774 6799999999999999999977 567999999999999999
Q ss_pred cCccCc-hhhhCCCCCcEEEccCCcccccccc-cccce-ecEEEcCCCCCCC--CCccccccCCccEEEcCCCccccccc
Q 014560 80 ALSALP-AELGKLSKLGTLDLHSNQLKEYCVE-ACQLR-LSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 80 ~i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~-~~~~~-L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~ 154 (422)
.++.++ ..|..+++|++|++++|.++.++.. +...+ |++|++++|.+.. +|..+..+++|++|++++|.++.++.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~ 166 (570)
T 2z63_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC 166 (570)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECG
T ss_pred cCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecH
Confidence 999774 6799999999999999999988763 44444 9999999999986 68899999999999999999876543
Q ss_pred cccCCCChHHHHHHHc-----cCCCCccccccc---------------------hhhhHHHhhhc---------------
Q 014560 155 SLVNGPTPALLKYLRS-----RLPENEDSEAST---------------------TKEDLITMATR--------------- 193 (422)
Q Consensus 155 ~~~~~~~~~~l~~~~~-----~~~~~~~~~~~~---------------------~~~~~~~~~~~--------------- 193 (422)
..+ ..+..+.. .+.......... ...........
T Consensus 167 ~~~-----~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~ 241 (570)
T 2z63_A 167 TDL-----RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG 241 (570)
T ss_dssp GGG-----HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCS
T ss_pred HHc-----cchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCch
Confidence 221 11111100 000000000000 00000000000
Q ss_pred -------------cccccceeeccCC-CCC-CCCcccccCCCccEEeCCCCccccCCccccCC-----------------
Q 014560 194 -------------LSVTSKELSLEGM-NLS-AIPSEIWEAGEITKLDLSRNSIQELPPELSSC----------------- 241 (422)
Q Consensus 194 -------------~~~~l~~l~l~~~-~~~-~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~----------------- 241 (422)
....++.+.+..+ .+. ..+..+..+++|++|+++++.+..+|..+..+
T Consensus 242 ~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~~L~~L~l~~n~~~~l~~ 321 (570)
T 2z63_A 242 NLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT 321 (570)
T ss_dssp SCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBCCSCCCCSEEEEESCBCSSCCB
T ss_pred hhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhhhccCCccEEeeccCcccccCc
Confidence 0001222223222 111 34455566788999999988887777665444
Q ss_pred -------------------------CCCcEEEecCCcCCCCC--hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccE
Q 014560 242 -------------------------ASLQTLILSRNKIKDWP--DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 294 (422)
Q Consensus 242 -------------------------~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 294 (422)
++|++|++++|.+.... +..+..+++|+.|++++|.+..+++. +..+++|+.
T Consensus 322 ~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~ 400 (570)
T 2z63_A 322 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEH 400 (570)
T ss_dssp CBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCE
T ss_pred ccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCE
Confidence 33444444444333322 23345667777777777766666555 777889999
Q ss_pred EEccCCcCCCCCC-CCCCCCccCceEEeCCCcCcc-CCcccccCCCCcEEECCCCCCc--ccCccCcCCCCCCEEeCCCC
Q 014560 295 LDLSYNIASLPEN-PPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSLQ--SIPEGFKNLTSLTELDLSDN 370 (422)
Q Consensus 295 l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~l~l~~n~l~--~l~~~~~~~~~L~~L~l~~n 370 (422)
|++++|.+.+..+ ..+..+++|+.|++++|.+.. .+..+.++++|+.|++++|.++ .+|..+..+++|+.|++++|
T Consensus 401 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n 480 (570)
T 2z63_A 401 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480 (570)
T ss_dssp EECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred EEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC
Confidence 9999988877654 568889999999999998885 5566788999999999999997 58999999999999999999
Q ss_pred CCccc-CCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 371 NISAL-PPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 371 ~l~~~-~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
.++.+ |..+..+ ++|++|++++|+++.+++..|..
T Consensus 481 ~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 516 (570)
T 2z63_A 481 QLEQLSPTAFNSL-SSLQVLNMASNQLKSVPDGIFDR 516 (570)
T ss_dssp CCCEECTTTTTTC-TTCCEEECCSSCCSCCCTTTTTT
T ss_pred ccccCChhhhhcc-cCCCEEeCCCCcCCCCCHHHhhc
Confidence 99977 4455555 99999999999999998877654
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.8e-35 Score=286.34 Aligned_cols=380 Identities=22% Similarity=0.209 Sum_probs=237.8
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCc
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 80 (422)
++++++|+++.+|.... ++|++|++++|.++.++ ..+.++++|++|++++|.++.+ |++|.++++|++|++++|.
T Consensus 35 ~l~ls~~~L~~ip~~~~---~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~ 111 (562)
T 3a79_B 35 MVDYSNRNLTHVPKDLP---PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111 (562)
T ss_dssp EEECTTSCCCSCCTTSC---TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEEcCCCCCccCCCCCC---CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCc
Confidence 45566666665555422 45566666666665553 4555566666666666655544 4455555666666666665
Q ss_pred CccCchhhhCCCCCcEEEccCCcccccc--cccccce-ecEEEcCCCCCCCCCccccccCCc--cEEEcCCCcc--cccc
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLKEYC--VEACQLR-LSVLDLSNNSLSGLPPEIGKMTTL--RKLLLTGNPL--RTLR 153 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~~l~--~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~~ 153 (422)
++.+|.. .+++|++|++++|.++.++ ..+...+ |+.|++++|.+... .+..+++| +.|++++|.+ +...
T Consensus 112 l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~ 187 (562)
T 3a79_B 112 LQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGE 187 (562)
T ss_dssp CCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSS
T ss_pred CCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccC
Confidence 5555544 5556666666666555443 2333333 56666665555441 23333333 5555555544 1111
Q ss_pred ccccCC-------------------------------------------CChHHHHHHHccCC---------CCcccccc
Q 014560 154 SSLVNG-------------------------------------------PTPALLKYLRSRLP---------ENEDSEAS 181 (422)
Q Consensus 154 ~~~~~~-------------------------------------------~~~~~l~~~~~~~~---------~~~~~~~~ 181 (422)
...+.. ..+..+..+..... ........
T Consensus 188 ~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~ 267 (562)
T 3a79_B 188 TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSV 267 (562)
T ss_dssp CCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHH
T ss_pred cccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHH
Confidence 100000 00000000000000 00000000
Q ss_pred chhhhHHHhhhccccccceeeccCCCCC-CCCcccc-----c--------------------------CCCccEEeCCCC
Q 014560 182 TTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIW-----E--------------------------AGEITKLDLSRN 229 (422)
Q Consensus 182 ~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~-----~--------------------------~~~L~~L~l~~~ 229 (422)
.. ... .....++.++++++.+. .+|..++ . ..++++|++++|
T Consensus 268 ~~----~~~--~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n 341 (562)
T 3a79_B 268 KL----FQF--FWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDT 341 (562)
T ss_dssp HH----HHH--HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESS
T ss_pred HH----HHh--hhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCC
Confidence 00 000 01136667777666655 4554431 1 135777777777
Q ss_pred ccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC--CCCCCCCCccEEEccCCcCCC-CC
Q 014560 230 SIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS--DGFKDIPMLQILDLSYNIASL-PE 306 (422)
Q Consensus 230 ~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~l~l~~~~~~~-~~ 306 (422)
.+..++. ...+++|++|++++|.+.+..+..+..+++|+.|++++|.+..++. ..+..+++|+.|++++|.+.+ ..
T Consensus 342 ~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 420 (562)
T 3a79_B 342 PFIHMVC-PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAY 420 (562)
T ss_dssp CCCCCCC-CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCS
T ss_pred CcccccC-ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccC
Confidence 7654431 2678999999999999998666667889999999999999987653 347889999999999999988 55
Q ss_pred CCCCCCCccCceEEeCCCcCcc-CCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCcc
Q 014560 307 NPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPS 385 (422)
Q Consensus 307 ~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~ 385 (422)
...+..+++|+.|++++|.++. ++..+. ++|+.|++++|.++.+|..+..+++|+.|++++|+++.+|...+..+++
T Consensus 421 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 498 (562)
T 3a79_B 421 DRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTS 498 (562)
T ss_dssp SCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTT
T ss_pred hhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCC
Confidence 5568889999999999999873 433332 7999999999999999998889999999999999999999984444499
Q ss_pred ccEEEccCCCCCc
Q 014560 386 LQALRLDGNPLRS 398 (422)
Q Consensus 386 L~~l~l~~n~~~~ 398 (422)
|+.+++++|++..
T Consensus 499 L~~L~l~~N~~~c 511 (562)
T 3a79_B 499 LQYIWLHDNPWDC 511 (562)
T ss_dssp CCCEECCSCCBCC
T ss_pred CCEEEecCCCcCC
Confidence 9999999999874
No 22
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-36 Score=289.62 Aligned_cols=389 Identities=21% Similarity=0.210 Sum_probs=291.8
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 79 (422)
++||+++|+++.+|.... ++|++|++++|.+..++ ..+.++++|++|++++|.++.+ |..|.++++|++|++++|
T Consensus 3 ~~l~ls~n~l~~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSSCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 589999999999998643 89999999999998875 7899999999999999999977 778999999999999999
Q ss_pred cCccCchhhhCCCCCcEEEccCCccccc--ccccccce-ecEEEcCCCCCCCCCccccccCCc--cEEEcCCCcc--ccc
Q 014560 80 ALSALPAELGKLSKLGTLDLHSNQLKEY--CVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTL--RKLLLTGNPL--RTL 152 (422)
Q Consensus 80 ~i~~l~~~l~~~~~L~~L~l~~~~~~~l--~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L--~~L~l~~~~~--~~~ 152 (422)
.++.+|.. .+++|++|++++|.++.+ |..+...+ |+.|++++|.+.. ..+..+++| +.|++++|.+ ...
T Consensus 80 ~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~ 155 (520)
T 2z7x_B 80 KLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKE 155 (520)
T ss_dssp CCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSC
T ss_pred ceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccccc
Confidence 99999876 899999999999999864 45665555 9999999999876 457778888 9999999887 222
Q ss_pred cccccCCCC-----------------h-------------------------HHHHHHH--ccCCCCc---cccccch--
Q 014560 153 RSSLVNGPT-----------------P-------------------------ALLKYLR--SRLPENE---DSEASTT-- 183 (422)
Q Consensus 153 ~~~~~~~~~-----------------~-------------------------~~l~~~~--~~~~~~~---~~~~~~~-- 183 (422)
....+.... + .....+. ..+..+. .......
T Consensus 156 ~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~ 235 (520)
T 2z7x_B 156 DPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235 (520)
T ss_dssp CTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHH
T ss_pred ccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHH
Confidence 111111100 0 0000000 0000000 0000000
Q ss_pred -hhhHHHhhhccccccceeeccCCCCC-CCCccc-----ccCCCccEEeCCCCccccCC-ccccCC---CCCcEEEecCC
Q 014560 184 -KEDLITMATRLSVTSKELSLEGMNLS-AIPSEI-----WEAGEITKLDLSRNSIQELP-PELSSC---ASLQTLILSRN 252 (422)
Q Consensus 184 -~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~-----~~~~~L~~L~l~~~~l~~~~-~~~~~~---~~L~~L~l~~~ 252 (422)
....... .....++.++++++.+. .+|..+ ..+++|+.++++++.+ .+| ..+..+ .+|+.|++++|
T Consensus 236 ~~~~~~~~--~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~L~~L~l~~n 312 (520)
T 2z7x_B 236 SFIRILQL--VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF-GFPQSYIYEIFSNMNIKNFTVSGT 312 (520)
T ss_dssp HHHHHHHH--HHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC-CSCTHHHHHHHHTCCCSEEEEESS
T ss_pred HHHHHHHH--hhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce-ecchhhhhcccccCceeEEEcCCC
Confidence 0000000 01236777777777776 667766 6677888888888777 565 223322 57888888888
Q ss_pred cCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCC--CCCCCCCCccCceEEeCCCcCcc-C
Q 014560 253 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLP--ENPPFSSLPHLQELYLRRMQLRE-A 329 (422)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~i~~-l 329 (422)
.+..... ...+++|+.|++++|.+....+..+..+++|+.|++++|.+.+. .+..+..+++|+.|++++|.+.. +
T Consensus 313 ~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l 390 (520)
T 2z7x_B 313 RMVHMLC--PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDE 390 (520)
T ss_dssp CCCCCCC--CSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCG
T ss_pred ccccccc--hhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCccc
Confidence 7766542 25788999999999999886666688999999999999988863 23457888999999999999987 7
Q ss_pred Ccc-cccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHh
Q 014560 330 PTD-ILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 330 ~~~-~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
|.. +..+++|+.|++++|.++ .+|..+. ++|+.|++++|+++.+|..++.+ ++|++|++++|+++.++...|.
T Consensus 391 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~ 465 (520)
T 2z7x_B 391 KKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQVVKL-EALQELNVASNQLKSVPDGIFD 465 (520)
T ss_dssp GGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGGGGGC-TTCCEEECCSSCCCCCCTTTTT
T ss_pred ccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchhhhcC-CCCCEEECCCCcCCccCHHHhc
Confidence 765 677899999999999996 4455453 79999999999999999988866 9999999999999999887554
No 23
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.3e-34 Score=263.57 Aligned_cols=306 Identities=25% Similarity=0.354 Sum_probs=235.5
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEE
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 98 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~ 98 (422)
+..+++|++|+++++.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+..+++|++|+
T Consensus 40 ~~~l~~L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELY 116 (347)
T ss_dssp HHHHTTCSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEE
T ss_pred chhcccccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEE
Confidence 5677778888888887777653 6777788888888887777755 777788888888888777764 477778888888
Q ss_pred ccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccc
Q 014560 99 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 178 (422)
Q Consensus 99 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 178 (422)
+++|.+..++......+|+.|++++|.....+..+..+++|++|++++|.+..+
T Consensus 117 l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-------------------------- 170 (347)
T 4fmz_A 117 LNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-------------------------- 170 (347)
T ss_dssp CTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC--------------------------
T ss_pred CcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc--------------------------
Confidence 888777776663333337777777775444344467777777777777655322
Q ss_pred cccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC
Q 014560 179 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258 (422)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (422)
+. +..+++|++|++++|.+..++. +..+++|+.+++++|.+...+
T Consensus 171 ---------------------------------~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~ 215 (347)
T 4fmz_A 171 ---------------------------------TP-IANLTDLYSLSLNYNQIEDISP-LASLTSLHYFTAYVNQITDIT 215 (347)
T ss_dssp ---------------------------------GG-GGGCTTCSEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCG
T ss_pred ---------------------------------hh-hccCCCCCEEEccCCccccccc-ccCCCccceeecccCCCCCCc
Confidence 22 4456788999999988887765 778889999999998888776
Q ss_pred hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCC
Q 014560 259 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQ 338 (422)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~ 338 (422)
. +..+++|+.|++++|.+..+++ +..+++|+.|++++|.++.. ..+..+++|+.|++++|.++.++ .+..+++
T Consensus 216 ~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~~-~~~~l~~ 288 (347)
T 4fmz_A 216 P--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDIS-VLNNLSQ 288 (347)
T ss_dssp G--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCCG-GGGGCTT
T ss_pred h--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCCh-hhcCCCC
Confidence 5 6788999999999998888766 78889999999999988775 35788899999999999988874 4778899
Q ss_pred CcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCC
Q 014560 339 LRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 339 L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
|+.|++++|.++.. +..+..+++|+.|++++|.++.++. +..+ ++|++|++++|+++
T Consensus 289 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l-~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 289 LNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASL-SKMDSADFANQVIK 346 (347)
T ss_dssp CSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGC-TTCSEESSSCC---
T ss_pred CCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhh-hccceeehhhhccc
Confidence 99999999999854 5668889999999999999987766 5555 89999999999875
No 24
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.1e-34 Score=283.75 Aligned_cols=411 Identities=24% Similarity=0.272 Sum_probs=284.6
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~ 78 (422)
+++|||++|+|+.++..+|.++++|++|+|++|.++.++ .+|.++++|++|++++|.++.+| .+|.++++|++|++++
T Consensus 54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~ 133 (635)
T 4g8a_A 54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE 133 (635)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTT
T ss_pred CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCC
Confidence 578999999999999888999999999999999998885 57899999999999999999886 4688999999999999
Q ss_pred CcCccCch-hhhCCCCCcEEEccCCccccc--ccccccce-ecEEEcCCCCCCCC-CccccccCCcc----EEEcCCCcc
Q 014560 79 NALSALPA-ELGKLSKLGTLDLHSNQLKEY--CVEACQLR-LSVLDLSNNSLSGL-PPEIGKMTTLR----KLLLTGNPL 149 (422)
Q Consensus 79 ~~i~~l~~-~l~~~~~L~~L~l~~~~~~~l--~~~~~~~~-L~~L~l~~~~~~~~-~~~~~~l~~L~----~L~l~~~~~ 149 (422)
|.++.++. .|+++++|++|++++|.++.+ +....... |+.|++++|+++.+ +..+..+.+++ .++++.|.+
T Consensus 134 N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l 213 (635)
T 4g8a_A 134 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 213 (635)
T ss_dssp SCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCC
T ss_pred CcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcc
Confidence 99998865 488999999999999988754 44444444 99999999998873 44455554433 567777776
Q ss_pred ccccccccCCCC------------hHHHHHHHccCCCCc-------------------cccc------------------
Q 014560 150 RTLRSSLVNGPT------------PALLKYLRSRLPENE-------------------DSEA------------------ 180 (422)
Q Consensus 150 ~~~~~~~~~~~~------------~~~l~~~~~~~~~~~-------------------~~~~------------------ 180 (422)
..++...+.... ..........+.... ....
T Consensus 214 ~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~ 293 (635)
T 4g8a_A 214 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 293 (635)
T ss_dssp CEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCS
T ss_pred cccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcc
Confidence 655443322210 011111000000000 0000
Q ss_pred ----cchhhhHH---------------HhhhccccccceeeccCCCCCCCCc--------------------ccccCCCc
Q 014560 181 ----STTKEDLI---------------TMATRLSVTSKELSLEGMNLSAIPS--------------------EIWEAGEI 221 (422)
Q Consensus 181 ----~~~~~~~~---------------~~~~~~~~~l~~l~l~~~~~~~~~~--------------------~~~~~~~L 221 (422)
........ .........++.+++.++.+..++. ....++++
T Consensus 294 ~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L 373 (635)
T 4g8a_A 294 YLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSL 373 (635)
T ss_dssp CEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTC
T ss_pred cccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCccccccccc
Confidence 00000000 0000111234444444443322211 11224566
Q ss_pred cEEeCCCCccc--------------------------cCCccccCCCCCcEEEecCCcCCC-CChHHHhcCCCCCEEECC
Q 014560 222 TKLDLSRNSIQ--------------------------ELPPELSSCASLQTLILSRNKIKD-WPDAILTSLSSLSCLKLD 274 (422)
Q Consensus 222 ~~L~l~~~~l~--------------------------~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~ 274 (422)
+.++++.+.+. .++..+..+++|+.+++..+.... .+...+..+++++.++++
T Consensus 374 ~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls 453 (635)
T 4g8a_A 374 EFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 453 (635)
T ss_dssp CEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECT
T ss_pred ccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccc
Confidence 66666666543 223345566677777777664443 334456778899999999
Q ss_pred CCCCCcCCCCCCCCCCCccEEEccCCcC-CCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc
Q 014560 275 NNPLRQVPSDGFKDIPMLQILDLSYNIA-SLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI 352 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l 352 (422)
.|.+....+..+..++.++.+++++|.+ ....+..+..+++|+.|++++|.++.+ |..+.++++|+.|++++|+++.+
T Consensus 454 ~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l 533 (635)
T 4g8a_A 454 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL 533 (635)
T ss_dssp TSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBC
T ss_pred ccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCC
Confidence 9998888888888999999999999864 345667789999999999999999976 55688999999999999999988
Q ss_pred C-ccCcCCCCCCEEeCCCCCCcccCCccc-cCCccccEEEccCCCCCccchHHHhhhHHHHHHHHHh
Q 014560 353 P-EGFKNLTSLTELDLSDNNISALPPELG-LLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKD 417 (422)
Q Consensus 353 ~-~~~~~~~~L~~L~l~~n~l~~~~~~~~-~~~~~L~~l~l~~n~~~~i~~~~~~~~~~~~~~~~~~ 417 (422)
+ ..|.++++|+.|++++|+|+.++...+ ...++|++|++++|++. +++....+..|+++
T Consensus 534 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~------C~C~~~~~~~wl~~ 594 (635)
T 4g8a_A 534 DTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA------CTCEHQSFLQWIKD 594 (635)
T ss_dssp CCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC------CSGGGHHHHHHHHH
T ss_pred ChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc------ccCCcHHHHHHHHh
Confidence 4 458999999999999999997766544 44368999999999987 34445556666665
No 25
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=4.6e-35 Score=295.95 Aligned_cols=400 Identities=23% Similarity=0.252 Sum_probs=282.2
Q ss_pred CceeeccCCc-ceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCcccc-CCCC--CccCCCCCEEE
Q 014560 1 MSKLDVEGNK-LTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILS-IPSS--ISGCCSLAEFY 75 (422)
Q Consensus 1 L~~L~ls~~~-i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~-l~~~--~~~~~~L~~L~ 75 (422)
|++|++++|. +..++..+|.++++|++|++++|.+..+ |..|.++++|++|++++|.+.. +|.. +.++++|++|+
T Consensus 50 L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~ 129 (844)
T 3j0a_A 50 LQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLD 129 (844)
T ss_dssp CSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEE
T ss_pred CeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEE
Confidence 6899999995 5678777899999999999999999876 7889999999999999999885 4444 89999999999
Q ss_pred cCCCcCccC--chhhhCCCCCcEEEccCCcccccccc-ccc---ceecEEEcCCCCCCC-CCccccccCC------ccEE
Q 014560 76 MGNNALSAL--PAELGKLSKLGTLDLHSNQLKEYCVE-ACQ---LRLSVLDLSNNSLSG-LPPEIGKMTT------LRKL 142 (422)
Q Consensus 76 l~~~~i~~l--~~~l~~~~~L~~L~l~~~~~~~l~~~-~~~---~~L~~L~l~~~~~~~-~~~~~~~l~~------L~~L 142 (422)
+++|.+..+ +..+.++++|++|++++|.+..+... +.. ..|+.|++++|.+.. .+..+..+.+ |+.|
T Consensus 130 Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L 209 (844)
T 3j0a_A 130 LSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEIL 209 (844)
T ss_dssp EESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEE
T ss_pred CCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEE
Confidence 999999865 46799999999999999998865433 222 349999999998877 5555665555 9999
Q ss_pred EcCCCccccccccccCCC----C------------------------hHHHHHH-HccCCCCccccccchhhhHHHhhhc
Q 014560 143 LLTGNPLRTLRSSLVNGP----T------------------------PALLKYL-RSRLPENEDSEASTTKEDLITMATR 193 (422)
Q Consensus 143 ~l~~~~~~~~~~~~~~~~----~------------------------~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (422)
++++|.+.......+... . ...+..+ ...+..+...... ..........
T Consensus 210 ~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~--l~~~~~~~~~ 287 (844)
T 3j0a_A 210 DVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGF--VFSLNSRVFE 287 (844)
T ss_dssp BCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCC--CCEECSCCSS
T ss_pred ecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCc--ccccChhhhh
Confidence 999986542111111000 0 0000000 0000000000000 0001111223
Q ss_pred cccccceeeccCCCCCCCC-cccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEE
Q 014560 194 LSVTSKELSLEGMNLSAIP-SEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCL 271 (422)
Q Consensus 194 ~~~~l~~l~l~~~~~~~~~-~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 271 (422)
....++.+++.+|.+..++ ..+..+++|++|++++|.+..+ +..|..+++|+.|++++|.+..+++..|..+++|+.|
T Consensus 288 ~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L 367 (844)
T 3j0a_A 288 TLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTL 367 (844)
T ss_dssp SCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEE
T ss_pred cCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEE
Confidence 3468999999999998664 4566789999999999999886 5569999999999999999999888888899999999
Q ss_pred ECCCCCCCcCCC-------------------C---------------------CCCCCCCccEEEccCCcCCCCCCC-CC
Q 014560 272 KLDNNPLRQVPS-------------------D---------------------GFKDIPMLQILDLSYNIASLPENP-PF 310 (422)
Q Consensus 272 ~l~~~~~~~~~~-------------------~---------------------~~~~~~~L~~l~l~~~~~~~~~~~-~~ 310 (422)
++++|.+..++. . .+..+++|+.|++++|.+.+.... .+
T Consensus 368 ~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 447 (844)
T 3j0a_A 368 DLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTP 447 (844)
T ss_dssp EEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSS
T ss_pred ECCCCCCCcccCCCCcchhccCCCCcccccccccccceeecccCccccCchhhhhhcCCccceeeCCCCccccccccccc
Confidence 999998765432 0 011455666666666665543222 23
Q ss_pred CCCccCceEEeCCCcCccC------CcccccCCCCcEEECCCCCCcccC-ccCcCCCCCCEEeCCCCCCcccCCccccCC
Q 014560 311 SSLPHLQELYLRRMQLREA------PTDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE 383 (422)
Q Consensus 311 ~~~~~L~~L~l~~~~i~~l------~~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 383 (422)
..+++|+.|++++|.+... +..+.++++|+.|++++|.++.++ ..|..+++|+.|++++|+++.++...+.
T Consensus 448 ~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~-- 525 (844)
T 3j0a_A 448 SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP-- 525 (844)
T ss_dssp CSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--
T ss_pred ccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--
Confidence 4456666777776666422 233556777888888888777664 3477788888888888888877766554
Q ss_pred ccccEEEccCCCCCccchHHH
Q 014560 384 PSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 384 ~~L~~l~l~~n~~~~i~~~~~ 404 (422)
++|+.|++++|.++.+.+..|
T Consensus 526 ~~L~~L~Ls~N~l~~~~~~~~ 546 (844)
T 3j0a_A 526 ANLEILDISRNQLLAPNPDVF 546 (844)
T ss_dssp SCCCEEEEEEECCCCCCSCCC
T ss_pred ccccEEECCCCcCCCCChhHh
Confidence 677777777777776665544
No 26
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=3.8e-34 Score=260.60 Aligned_cols=299 Identities=25% Similarity=0.393 Sum_probs=252.0
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
|++|++++|.+..++. +..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .+.++++|++|++++|.
T Consensus 46 L~~L~l~~~~i~~~~~--~~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L~l~~n~ 121 (347)
T 4fmz_A 46 ITKLVVAGEKVASIQG--IEYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLRELYLNEDN 121 (347)
T ss_dssp CSEEECCSSCCCCCTT--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCSEEECTTSC
T ss_pred ccEEEEeCCccccchh--hhhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCCEEECcCCc
Confidence 6899999999999986 8999999999999999998876 899999999999999999885 68999999999999999
Q ss_pred CccCchhhhCCCCCcEEEccCCccc-ccccccccc-eecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccC
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLK-EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 158 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (422)
+..++. +..+++|++|++++|... .++. .... .|+.|++++|.+..++. +..+++|++|++++|.+..++
T Consensus 122 i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~----- 193 (347)
T 4fmz_A 122 ISDISP-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDIS----- 193 (347)
T ss_dssp CCCCGG-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCG-----
T ss_pred ccCchh-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccc-----
Confidence 998876 899999999999999544 4444 4444 49999999999988765 889999999999998774331
Q ss_pred CCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccc
Q 014560 159 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 238 (422)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 238 (422)
. +..+++|+.+++++|.+..++. +
T Consensus 194 ------------------------------------------------------~-~~~l~~L~~L~l~~n~l~~~~~-~ 217 (347)
T 4fmz_A 194 ------------------------------------------------------P-LASLTSLHYFTAYVNQITDITP-V 217 (347)
T ss_dssp ------------------------------------------------------G-GGGCTTCCEEECCSSCCCCCGG-G
T ss_pred ------------------------------------------------------c-ccCCCccceeecccCCCCCCch-h
Confidence 1 3446678888888888887655 7
Q ss_pred cCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCce
Q 014560 239 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQE 318 (422)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 318 (422)
..+++|++|++++|.+...+. +..+++|+.|++++|.+..++ .+..+++|+.|++++|.+.+. ..+..+++|+.
T Consensus 218 ~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~ 291 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDIN--AVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNS 291 (347)
T ss_dssp GGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSE
T ss_pred hcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCCh--hHhcCCCcCEEEccCCccCCC--hhhcCCCCCCE
Confidence 788899999999998888766 678899999999999888764 378889999999999988876 34788899999
Q ss_pred EEeCCCcCccC-CcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcc
Q 014560 319 LYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA 374 (422)
Q Consensus 319 L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~ 374 (422)
|++++|.++.. +..+.++++|+.|++++|.++.++. +..+++|+.|++++|.|++
T Consensus 292 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~N~i~~ 347 (347)
T 4fmz_A 292 LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFANQVIKK 347 (347)
T ss_dssp EECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSCC----
T ss_pred EECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhhhcccC
Confidence 99999998854 4557889999999999999998866 8889999999999998863
No 27
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=3.8e-34 Score=270.63 Aligned_cols=325 Identities=27% Similarity=0.428 Sum_probs=281.5
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
|++|++++|.+..++. +.++++|++|++++|.+..++. +.++++|++|++++|.++.++. +.++++|++|++++|.
T Consensus 70 L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~ 145 (466)
T 1o6v_A 70 LTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP-LANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSSNT 145 (466)
T ss_dssp CCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-GTTCTTCSEEEEEEEE
T ss_pred CCEEECCCCccCCchh--hhccccCCEEECCCCccccChh-hcCCCCCCEEECCCCCCCCChH-HcCCCCCCEEECCCCc
Confidence 6899999999999887 9999999999999999988876 9999999999999999998865 8999999999999999
Q ss_pred CccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCC
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 160 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 160 (422)
+..++. +..+++|+.|+++ +.+..++.......|+.|++++|.+..++ .+..+++|++|++++|.+..+..
T Consensus 146 l~~~~~-~~~l~~L~~L~l~-~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~------ 216 (466)
T 1o6v_A 146 ISDISA-LSGLTSLQQLSFG-NQVTDLKPLANLTTLERLDISSNKVSDIS-VLAKLTNLESLIATNNQISDITP------ 216 (466)
T ss_dssp ECCCGG-GTTCTTCSEEEEE-ESCCCCGGGTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG------
T ss_pred cCCChh-hccCCcccEeecC-CcccCchhhccCCCCCEEECcCCcCCCCh-hhccCCCCCEEEecCCccccccc------
Confidence 998864 8999999999996 45555555333334999999999998874 48899999999999998765432
Q ss_pred ChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccC
Q 014560 161 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS 240 (422)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 240 (422)
......++.++++++.+..++ .+..+++|++|++++|.+..+++ +..
T Consensus 217 -------------------------------~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~-~~~ 263 (466)
T 1o6v_A 217 -------------------------------LGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP-LSG 263 (466)
T ss_dssp -------------------------------GGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG-GTT
T ss_pred -------------------------------ccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh-hhc
Confidence 011357899999999888764 56778999999999999988765 889
Q ss_pred CCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEE
Q 014560 241 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELY 320 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 320 (422)
+++|+.|++++|.+...++ +..+++|+.|++++|.+..+++ +..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~ 337 (466)
T 1o6v_A 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLF 337 (466)
T ss_dssp CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEE
T ss_pred CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeE
Confidence 9999999999999988766 6889999999999999988766 7889999999999999987765 78899999999
Q ss_pred eCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCcc
Q 014560 321 LRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 379 (422)
Q Consensus 321 l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~ 379 (422)
+++|.++.+ ..+.++++|+.|++++|.++.++. +..+++|+.|++++|.++.+|...
T Consensus 338 l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~~p~~~ 394 (466)
T 1o6v_A 338 FYNNKVSDV-SSLANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTNAPVNY 394 (466)
T ss_dssp CCSSCCCCC-GGGTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEECCCBCC
T ss_pred CCCCccCCc-hhhccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccCCchhh
Confidence 999999987 467889999999999999997765 889999999999999998766554
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=3.9e-34 Score=277.07 Aligned_cols=376 Identities=21% Similarity=0.174 Sum_probs=263.9
Q ss_pred hcccccceecccccccCCchhhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCCCcCccC-chhhhCCCCCcEEE
Q 014560 21 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLD 98 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~ 98 (422)
.+...++++++++.++.+|..+. ++|++|++++|.++.++ ..|.++++|++|++++|.++.+ |..|..+++|++|+
T Consensus 29 ~~~~~~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 29 SNELESMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp ----CCEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred ccCCCcEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 44556899999999999987664 79999999999999885 6899999999999999999977 67799999999999
Q ss_pred ccCCcccccccccccceecEEEcCCCCCCCC--CccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccC--CC
Q 014560 99 LHSNQLKEYCVEACQLRLSVLDLSNNSLSGL--PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL--PE 174 (422)
Q Consensus 99 l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~--~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~ 174 (422)
+++|.++.++.. ...+|+.|++++|.+..+ |..+..+++|++|++++|.+..........-..+.+..-...+ ..
T Consensus 107 Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~ 185 (562)
T 3a79_B 107 VSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKG 185 (562)
T ss_dssp CTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCS
T ss_pred CCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccc
Confidence 999999999887 444599999999999885 4789999999999999998864221111000000000000000 00
Q ss_pred Cccccccc-h-------------hhhHHHhhhccccccceeeccCC----------------------------CCC---
Q 014560 175 NEDSEAST-T-------------KEDLITMATRLSVTSKELSLEGM----------------------------NLS--- 209 (422)
Q Consensus 175 ~~~~~~~~-~-------------~~~~~~~~~~~~~~l~~l~l~~~----------------------------~~~--- 209 (422)
........ . ..............++.+++.++ .+.
T Consensus 186 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~ 265 (562)
T 3a79_B 186 GETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKC 265 (562)
T ss_dssp SSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHH
T ss_pred cCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHH
Confidence 00000000 0 00000000001123333333332 111
Q ss_pred --CCCcccccCCCccEEeCCCCccc-cCCccc-----cCCC--------------------------CCcEEEecCCcCC
Q 014560 210 --AIPSEIWEAGEITKLDLSRNSIQ-ELPPEL-----SSCA--------------------------SLQTLILSRNKIK 255 (422)
Q Consensus 210 --~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~-----~~~~--------------------------~L~~L~l~~~~~~ 255 (422)
.++... ...+|++|++++|.+. .+|..+ ..++ +|+.+++++|.+.
T Consensus 266 ~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~ 344 (562)
T 3a79_B 266 SVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFI 344 (562)
T ss_dssp HHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCC
T ss_pred HHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcc
Confidence 111111 1248999999999887 566654 3333 3555555555554
Q ss_pred CCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCC--CCCCCCCccCceEEeCCCcCcc-CCcc
Q 014560 256 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE--NPPFSSLPHLQELYLRRMQLRE-APTD 332 (422)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~i~~-l~~~ 332 (422)
.... ...+++|+.|++++|.+....+..+..+++|+.|++++|.+++.. +..+..+++|+.|++++|.++. +|..
T Consensus 345 ~~~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 422 (562)
T 3a79_B 345 HMVC--PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDR 422 (562)
T ss_dssp CCCC--CSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSC
T ss_pred cccC--ccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChh
Confidence 4321 156789999999999988866667888999999999999888754 3457888999999999999886 7765
Q ss_pred -cccCCCCcEEECCCCCCc-ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHh
Q 014560 333 -ILRLQQLRILDLSQNSLQ-SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 333 -~~~~~~L~~l~l~~n~l~-~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
+..+++|+.|++++|.++ .+|..+. ++|+.|++++|+++.+|..++.+ ++|++|++++|+++.+++..|.
T Consensus 423 ~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~ip~~~~~l-~~L~~L~L~~N~l~~l~~~~~~ 494 (562)
T 3a79_B 423 TCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSIPKDVTHL-QALQELNVASNQLKSVPDGVFD 494 (562)
T ss_dssp CCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCCCTTTTSS-CCCSEEECCSSCCCCCCTTSTT
T ss_pred hhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCcccChhhcCC-CCCCEEECCCCCCCCCCHHHHh
Confidence 667899999999999987 3444443 69999999999999999999866 9999999999999999987544
No 29
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.3e-33 Score=264.56 Aligned_cols=345 Identities=24% Similarity=0.256 Sum_probs=212.1
Q ss_pred CceeeccCCcceecChhHHhhcccccceeccccccc-CCchhhhcccc-------------CCeEeccCCccccCCCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLN-GMPETIGSLSR-------------LIRLDLHQNRILSIPSSIS 66 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~-~~~~~~~~~~~-------------L~~L~l~~~~~~~l~~~~~ 66 (422)
|++|++++|+++.+|.. +.++++|++|++++|.+. .+|..++.+++ +++|++++|.++.+|..
T Consensus 13 L~~L~l~~n~l~~iP~~-i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~-- 89 (454)
T 1jl5_A 13 LQEPLRHSSNLTEMPVE-AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPEL-- 89 (454)
T ss_dssp ----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSC--
T ss_pred chhhhcccCchhhCChh-HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCC--
Confidence 67899999999999987 999999999999999985 77888877766 49999999999988773
Q ss_pred cCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCC
Q 014560 67 GCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTG 146 (422)
Q Consensus 67 ~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~ 146 (422)
.++|++|++++|.++.+|.. .++|++|++++|.++.++... ..|++|++++|.++++| .+..+++|++|++++
T Consensus 90 -~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~--~~L~~L~L~~n~l~~lp-~~~~l~~L~~L~l~~ 162 (454)
T 1jl5_A 90 -PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP--PLLEYLGVSNNQLEKLP-ELQNSSFLKIIDVDN 162 (454)
T ss_dssp -CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCS
T ss_pred -cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC--CCCCEEECcCCCCCCCc-ccCCCCCCCEEECCC
Confidence 47899999999999998864 489999999999999876532 45999999999999988 599999999999999
Q ss_pred CccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeC
Q 014560 147 NPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDL 226 (422)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l 226 (422)
|.++.++.... .+..+......... +. .......++.+++++|.+..+|... ++|++|++
T Consensus 163 N~l~~lp~~~~-------------~L~~L~L~~n~l~~---l~-~~~~l~~L~~L~l~~N~l~~l~~~~---~~L~~L~l 222 (454)
T 1jl5_A 163 NSLKKLPDLPP-------------SLEFIAAGNNQLEE---LP-ELQNLPFLTAIYADNNSLKKLPDLP---LSLESIVA 222 (454)
T ss_dssp SCCSCCCCCCT-------------TCCEEECCSSCCSS---CC-CCTTCTTCCEEECCSSCCSSCCCCC---TTCCEEEC
T ss_pred CcCcccCCCcc-------------cccEEECcCCcCCc---Cc-cccCCCCCCEEECCCCcCCcCCCCc---CcccEEEC
Confidence 99876543211 00000000000000 00 0122345666666666666554432 36666777
Q ss_pred CCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCC
Q 014560 227 SRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE 306 (422)
Q Consensus 227 ~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~ 306 (422)
++|.+..+| .+..+++|+.|++++|.+..++. .+++|+.|++++|.+..++.. +++|+.+++++|.+++..
T Consensus 223 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~l~~----~~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 223 GNNILEELP-ELQNLPFLTTIYADNNLLKTLPD----LPPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCS----CCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEES
T ss_pred cCCcCCccc-ccCCCCCCCEEECCCCcCCcccc----cccccCEEECCCCcccccCcc----cCcCCEEECcCCccCccc
Confidence 776666665 36666777777777776666543 235677777777666665432 356677777766665421
Q ss_pred CCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccc
Q 014560 307 NPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSL 386 (422)
Q Consensus 307 ~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L 386 (422)
. ..++|+.|++++|.++.++.. .++|+.|++++|.++.+|.. +++|+.|++++|.++.+|. .. ++|
T Consensus 294 ~----~~~~L~~L~l~~N~l~~i~~~---~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l-~~L 359 (454)
T 1jl5_A 294 E----LPPNLYYLNASSNEIRSLCDL---PPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LP-QNL 359 (454)
T ss_dssp C----CCTTCCEEECCSSCCSEECCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CC-TTC
T ss_pred C----cCCcCCEEECcCCcCCcccCC---cCcCCEEECCCCcccccccc---CCcCCEEECCCCccccccc---hh-hhc
Confidence 1 013455555555555443211 13566666666666665543 3566666666666666655 12 566
Q ss_pred cEEEccCCCCCc
Q 014560 387 QALRLDGNPLRS 398 (422)
Q Consensus 387 ~~l~l~~n~~~~ 398 (422)
++|++++|++..
T Consensus 360 ~~L~L~~N~l~~ 371 (454)
T 1jl5_A 360 KQLHVEYNPLRE 371 (454)
T ss_dssp CEEECCSSCCSS
T ss_pred cEEECCCCCCCc
Confidence 666666666655
No 30
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.7e-33 Score=260.27 Aligned_cols=304 Identities=24% Similarity=0.299 Sum_probs=163.2
Q ss_pred hcccccceecccccccCCchh-hhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCCCcCccC-chhhhCCCCCcEE
Q 014560 21 SWTMLTELIASKNLLNGMPET-IGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTL 97 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~~~-~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L 97 (422)
.+.++++|+++++.++.+|.. +..+++|++|++++|.+..++ ..|..+++|++|++++|.+..+ |..+..+++|++|
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 122 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 122 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence 345666666666666666533 566666777777666666553 3566666777777776666655 3446666677777
Q ss_pred EccCCcccccccccc-cc-eecEEEcCCCCCCCC-CccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCC
Q 014560 98 DLHSNQLKEYCVEAC-QL-RLSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPE 174 (422)
Q Consensus 98 ~l~~~~~~~l~~~~~-~~-~L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 174 (422)
++++|.++.++...+ .. +|+.|++++|.+..+ +..+..+++|++|++++|.++.++.
T Consensus 123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-------------------- 182 (390)
T 3o6n_A 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDL-------------------- 182 (390)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCG--------------------
T ss_pred ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcccc--------------------
Confidence 777766666665542 22 267777777766664 3346777777777777776643311
Q ss_pred CccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcC
Q 014560 175 NEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKI 254 (422)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~ 254 (422)
..+++|+.+++++|.+..+ ...++|+.+++++|.+
T Consensus 183 -----------------------------------------~~l~~L~~L~l~~n~l~~~----~~~~~L~~L~l~~n~l 217 (390)
T 3o6n_A 183 -----------------------------------------SLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSI 217 (390)
T ss_dssp -----------------------------------------GGCTTCSEEECCSSCCSEE----ECCSSCSEEECCSSCC
T ss_pred -----------------------------------------ccccccceeeccccccccc----CCCCcceEEECCCCee
Confidence 1122334444444433321 1123344444444443
Q ss_pred CCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccc
Q 014560 255 KDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDIL 334 (422)
Q Consensus 255 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~ 334 (422)
...+. ...++|+.|++++|.+...+ .+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++..+.
T Consensus 218 ~~~~~---~~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 292 (390)
T 3o6n_A 218 NVVRG---PVNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQ 292 (390)
T ss_dssp CEEEC---CCCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEECSSS
T ss_pred eeccc---cccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCcccC
Confidence 33322 11234444444444444331 23444444444444444444444444455555555555555555544444
Q ss_pred cCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCC
Q 014560 335 RLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 335 ~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
.+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++ +... ++|++|++++|++.
T Consensus 293 ~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~-~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTH-HTLKNLTLSHNDWD 352 (390)
T ss_dssp CCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTT-CCCSEEECCSSCEE
T ss_pred CCCCCCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhh-ccCCEEEcCCCCcc
Confidence 555555566655555555555555555666666666555543 2222 55666666666554
No 31
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=1.1e-32 Score=258.40 Aligned_cols=322 Identities=27% Similarity=0.332 Sum_probs=249.2
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
+++|++++|+++.++.. .++|++|++++|.++.+|+. ..+|++|++++|.++.+|... ++|++|++++|.
T Consensus 73 l~~L~l~~~~l~~lp~~----~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L~~n~ 142 (454)
T 1jl5_A 73 AHELELNNLGLSSLPEL----PPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKALSDLP---PLLEYLGVSNNQ 142 (454)
T ss_dssp CSEEECTTSCCSCCCSC----CTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCSCC---TTCCEEECCSSC
T ss_pred CCEEEecCCccccCCCC----cCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCcccCCC---CCCCEEECcCCC
Confidence 47889999998888762 37899999999999888753 378999999999988876532 789999999999
Q ss_pred CccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCC
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 160 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 160 (422)
++.+| .+.++++|++|++++|.++.++... ..|++|++++|.++.++ .+..+++|+.|++++|.++.++..
T Consensus 143 l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~--~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~l~~~----- 213 (454)
T 1jl5_A 143 LEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP--PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKKLPDL----- 213 (454)
T ss_dssp CSSCC-CCTTCTTCCEEECCSSCCSCCCCCC--TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSSCCCC-----
T ss_pred CCCCc-ccCCCCCCCEEECCCCcCcccCCCc--ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCcCCCC-----
Confidence 99998 5999999999999999999877643 36999999999999987 589999999999999988654321
Q ss_pred ChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccC
Q 014560 161 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSS 240 (422)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~ 240 (422)
...++.+++++|.+..+|. +..+++|++|++++|.++.+|..
T Consensus 214 ----------------------------------~~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~l~~N~l~~l~~~--- 255 (454)
T 1jl5_A 214 ----------------------------------PLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDL--- 255 (454)
T ss_dssp ----------------------------------CTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSC---
T ss_pred ----------------------------------cCcccEEECcCCcCCcccc-cCCCCCCCEEECCCCcCCccccc---
Confidence 1378899999999888874 77889999999999999887753
Q ss_pred CCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCC-ccCceE
Q 014560 241 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL-PHLQEL 319 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~-~~L~~L 319 (422)
+++|+.|++++|.+..++.. +++|+.|++++|.+..++. + .++|+.|++++|.+.+.. .+ ++|+.|
T Consensus 256 ~~~L~~L~l~~N~l~~l~~~----~~~L~~L~ls~N~l~~l~~--~--~~~L~~L~l~~N~l~~i~-----~~~~~L~~L 322 (454)
T 1jl5_A 256 PPSLEALNVRDNYLTDLPEL----PQSLTFLDVSENIFSGLSE--L--PPNLYYLNASSNEIRSLC-----DLPPSLEEL 322 (454)
T ss_dssp CTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSEESC--C--CTTCCEEECCSSCCSEEC-----CCCTTCCEE
T ss_pred ccccCEEECCCCcccccCcc----cCcCCEEECcCCccCcccC--c--CCcCCEEECcCCcCCccc-----CCcCcCCEE
Confidence 47899999999998887642 4789999999998887653 2 278999999999887532 23 589999
Q ss_pred EeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcc---cCCccccC------------Cc
Q 014560 320 YLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISA---LPPELGLL------------EP 384 (422)
Q Consensus 320 ~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~---~~~~~~~~------------~~ 384 (422)
++++|.++.+|.. +++|+.|++++|.++.+|. .+++|+.|++++|.++. +|..+..+ ++
T Consensus 323 ~Ls~N~l~~lp~~---~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~ 396 (454)
T 1jl5_A 323 NVSNNKLIELPAL---PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQ 396 (454)
T ss_dssp ECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC----------
T ss_pred ECCCCcccccccc---CCcCCEEECCCCccccccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccC
Confidence 9999998887764 5789999999999998887 46889999999998876 44444332 15
Q ss_pred cccEEEccCCCCCc
Q 014560 385 SLQALRLDGNPLRS 398 (422)
Q Consensus 385 ~L~~l~l~~n~~~~ 398 (422)
+|++|++++|++..
T Consensus 397 ~L~~L~ls~N~l~~ 410 (454)
T 1jl5_A 397 NLKQLHVETNPLRE 410 (454)
T ss_dssp --------------
T ss_pred cCCEEECCCCcCCc
Confidence 78999999998874
No 32
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=4.7e-33 Score=262.90 Aligned_cols=345 Identities=27% Similarity=0.262 Sum_probs=276.1
Q ss_pred ccceecccccccCCchhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCc-cC-chhhhCCCCCcEEEccC
Q 014560 25 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALS-AL-PAELGKLSKLGTLDLHS 101 (422)
Q Consensus 25 L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~-~l-~~~l~~~~~L~~L~l~~ 101 (422)
-+.++.+++.++.+|. + .++|++|++++|.++.+ |..|.++++|++|++++|.+. .+ +..|..+++|++|++++
T Consensus 12 ~~~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~ 88 (455)
T 3v47_A 12 GYNAICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88 (455)
T ss_dssp TTEEECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTT
T ss_pred ccccCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCC
Confidence 3467788888888887 3 37999999999999976 778999999999999999886 55 56799999999999999
Q ss_pred Ccccccc-cccccce-ecEEEcCCCCCCC-CCcc--ccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCc
Q 014560 102 NQLKEYC-VEACQLR-LSVLDLSNNSLSG-LPPE--IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENE 176 (422)
Q Consensus 102 ~~~~~l~-~~~~~~~-L~~L~l~~~~~~~-~~~~--~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (422)
|.+..+. ..+.... |++|++++|.+++ .+.. +..+++|++|++++|.++.+....+
T Consensus 89 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------------------- 149 (455)
T 3v47_A 89 NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASF------------------- 149 (455)
T ss_dssp CTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGG-------------------
T ss_pred CccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccc-------------------
Confidence 9999774 4455444 9999999999987 3333 8899999999999999876532211
Q ss_pred cccccchhhhHHHhhhccccccceeeccCCCCCCCC-cccccC--CCccEEeCCCCccccCCcc---------ccCCCCC
Q 014560 177 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIWEA--GEITKLDLSRNSIQELPPE---------LSSCASL 244 (422)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~~~--~~L~~L~l~~~~l~~~~~~---------~~~~~~L 244 (422)
......++.+++++|.+..++ ..+..+ .+++.++++++.+..++.. +..+++|
T Consensus 150 ---------------~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L 214 (455)
T 3v47_A 150 ---------------FLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSI 214 (455)
T ss_dssp ---------------GGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEE
T ss_pred ---------------cCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccccccccccee
Confidence 111257899999999988554 344443 7899999999998876532 3356889
Q ss_pred cEEEecCCcCCCCChHHHhcC---CCCCEEECCCCCCCcC----------CCCCCC--CCCCccEEEccCCcCCCCCCCC
Q 014560 245 QTLILSRNKIKDWPDAILTSL---SSLSCLKLDNNPLRQV----------PSDGFK--DIPMLQILDLSYNIASLPENPP 309 (422)
Q Consensus 245 ~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~----------~~~~~~--~~~~L~~l~l~~~~~~~~~~~~ 309 (422)
+.|++++|.+....+..+... ++|+.++++++..... ....+. ..++|+.+++++|.+.+..+..
T Consensus 215 ~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 294 (455)
T 3v47_A 215 TTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV 294 (455)
T ss_dssp EEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred eeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCccccccchhh
Confidence 999999998887555544443 8899999998754321 111122 2368999999999999888888
Q ss_pred CCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCcccc
Q 014560 310 FSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 387 (422)
Q Consensus 310 ~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (422)
+..+++|+.|++++|.+..+ +..+.++++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++...+..+++|+
T Consensus 295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 374 (455)
T 3v47_A 295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK 374 (455)
T ss_dssp TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence 99999999999999999966 55688999999999999999977 56789999999999999999977544444449999
Q ss_pred EEEccCCCCCccchHHHhh
Q 014560 388 ALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 388 ~l~l~~n~~~~i~~~~~~~ 406 (422)
+|++++|+++.++..+|..
T Consensus 375 ~L~L~~N~l~~~~~~~~~~ 393 (455)
T 3v47_A 375 ELALDTNQLKSVPDGIFDR 393 (455)
T ss_dssp EEECCSSCCSCCCTTTTTT
T ss_pred EEECCCCccccCCHhHhcc
Confidence 9999999999999877654
No 33
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-33 Score=260.52 Aligned_cols=301 Identities=22% Similarity=0.244 Sum_probs=263.4
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
+++|++++|.+..++...|.++++|++|++++|.+..++ ..+..+++|++|++++|.++.+ |..+.++++|++|++++
T Consensus 47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 126 (390)
T 3o6n_A 47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLER 126 (390)
T ss_dssp CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCC
Confidence 578999999999999999999999999999999998875 5899999999999999999977 55689999999999999
Q ss_pred CcCccCchh-hhCCCCCcEEEccCCcccccccc-cccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCcccccccc
Q 014560 79 NALSALPAE-LGKLSKLGTLDLHSNQLKEYCVE-ACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 155 (422)
Q Consensus 79 ~~i~~l~~~-l~~~~~L~~L~l~~~~~~~l~~~-~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 155 (422)
|.++.+|.. +..+++|++|++++|.+..+++. +...+ |+.|++++|.++.+ .+..+++|+.+++++|.++.+
T Consensus 127 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~L~~L~l~~n~l~~~--- 201 (390)
T 3o6n_A 127 NDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--DLSLIPSLFHANVSYNLLSTL--- 201 (390)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC--CGGGCTTCSEEECCSSCCSEE---
T ss_pred CccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc--ccccccccceeeccccccccc---
Confidence 999999776 68999999999999999987665 33334 99999999999886 467789999999999876432
Q ss_pred ccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCC
Q 014560 156 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 235 (422)
Q Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 235 (422)
....++++|++++|.+..++
T Consensus 202 ------------------------------------------------------------~~~~~L~~L~l~~n~l~~~~ 221 (390)
T 3o6n_A 202 ------------------------------------------------------------AIPIAVEELDASHNSINVVR 221 (390)
T ss_dssp ------------------------------------------------------------ECCSSCSEEECCSSCCCEEE
T ss_pred ------------------------------------------------------------CCCCcceEEECCCCeeeecc
Confidence 12247899999999988775
Q ss_pred ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCcc
Q 014560 236 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 315 (422)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 315 (422)
.. ..++|+.|++++|.+.+.+ .+..+++|+.|++++|.+..+.+..+..+++|+.|++++|.+++.. ..+..+++
T Consensus 222 ~~--~~~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~l~~ 296 (390)
T 3o6n_A 222 GP--VNVELTILKLQHNNLTDTA--WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALN-LYGQPIPT 296 (390)
T ss_dssp CC--CCSSCCEEECCSSCCCCCG--GGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEE-CSSSCCTT
T ss_pred cc--ccccccEEECCCCCCcccH--HHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccC-cccCCCCC
Confidence 43 3579999999999998873 4788999999999999999887777999999999999999988753 34577899
Q ss_pred CceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc
Q 014560 316 LQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 316 L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
|+.|++++|.+..+|..+..+++|+.|++++|.++.++ +..+++|+.|++++|.++
T Consensus 297 L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 297 LKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp CCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCEEECCCCcceecCccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCcc
Confidence 99999999999999988889999999999999999886 778899999999999886
No 34
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=6.3e-33 Score=260.21 Aligned_cols=298 Identities=20% Similarity=0.220 Sum_probs=175.5
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEE
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLD 98 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~ 98 (422)
+.++++|++|++++|.++.+| .+..+++|++|++++|.++.+| +..+++|++|++++|.++.++ +..+++|++|+
T Consensus 38 ~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLN 112 (457)
T ss_dssp HHHHTTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEE
T ss_pred hhHcCCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEE
Confidence 556666666666666666555 4666666666666666666654 566666666666666666653 56666666666
Q ss_pred ccCCcccccccccccc-eecEEEcCCCCCCCCCccccccCCccEEEcCCCc-cccccccccCCCChHHHHHHHccCCCCc
Q 014560 99 LHSNQLKEYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENE 176 (422)
Q Consensus 99 l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 176 (422)
+++|.++.++ +... +|+.|++++|.++.++ +..+++|++|++++|. +..++
T Consensus 113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~~----------------------- 165 (457)
T 3bz5_A 113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKLD----------------------- 165 (457)
T ss_dssp CCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCCC-----------------------
T ss_pred CCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCcccccc-----------------------
Confidence 6666666553 2222 2666666666666652 5566666666666663 21110
Q ss_pred cccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCC
Q 014560 177 DSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKD 256 (422)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~ 256 (422)
......++.+++++|.+..++ +..+++|+.|++++|.++.++ +..+++|+.|++++|.+.+
T Consensus 166 ---------------~~~l~~L~~L~ls~n~l~~l~--l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ 226 (457)
T 3bz5_A 166 ---------------VTPQTQLTTLDCSFNKITELD--VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTE 226 (457)
T ss_dssp ---------------CTTCTTCCEEECCSSCCCCCC--CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC
T ss_pred ---------------cccCCcCCEEECCCCccceec--cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccc
Confidence 001135666666666666654 455666677777776666652 5666667777777766666
Q ss_pred CChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCC--------CCCCCCccCceEEeCCCcCc-
Q 014560 257 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPEN--------PPFSSLPHLQELYLRRMQLR- 327 (422)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~--------~~~~~~~~L~~L~l~~~~i~- 327 (422)
++ +..+++|+.|++++|.+..++.. .+++|+.++++++.+..... ..+..+++|+.|++++|...
T Consensus 227 ip---~~~l~~L~~L~l~~N~l~~~~~~---~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~ 300 (457)
T 3bz5_A 227 ID---VTPLTQLTYFDCSVNPLTELDVS---TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLY 300 (457)
T ss_dssp CC---CTTCTTCSEEECCSSCCSCCCCT---TCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCC
T ss_pred cC---ccccCCCCEEEeeCCcCCCcCHH---HCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccc
Confidence 54 45666677777776666665433 33444444443333322111 01345566777777666422
Q ss_pred cCCc--------ccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCccc
Q 014560 328 EAPT--------DILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISAL 375 (422)
Q Consensus 328 ~l~~--------~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~ 375 (422)
.+|. .+.++++|+.|++++|.++.++ +.++++|+.|++++|+++.+
T Consensus 301 ~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l 354 (457)
T 3bz5_A 301 LLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF 354 (457)
T ss_dssp EEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC
T ss_pred eeccCCCcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc
Confidence 2211 1445667777777777777663 66777777777777777654
No 35
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=2.1e-32 Score=266.33 Aligned_cols=303 Identities=24% Similarity=0.265 Sum_probs=192.3
Q ss_pred cccccceecccccccCCch-hhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCCCcCccCc-hhhhCCCCCcEEE
Q 014560 22 WTMLTELIASKNLLNGMPE-TIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLD 98 (422)
Q Consensus 22 ~~~L~~L~l~~~~i~~~~~-~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~ 98 (422)
+.+++.++++++.++.+|. .+..+++|++|++++|.+..++ ..|..+++|++|++++|.++.++ ..|..+++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 3455555666655555542 3455556666666666555442 35555566666666666555443 3345556666666
Q ss_pred ccCCccccccccc-ccce-ecEEEcCCCCCCCC-CccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCC
Q 014560 99 LHSNQLKEYCVEA-CQLR-LSVLDLSNNSLSGL-PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPEN 175 (422)
Q Consensus 99 l~~~~~~~l~~~~-~~~~-L~~L~l~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 175 (422)
+++|.++.++... .... |+.|++++|.+..+ +..+..+++|+.|++++|.++.++...
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~------------------- 190 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSL------------------- 190 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGG-------------------
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhh-------------------
Confidence 6666655555543 2222 66666666655553 234566666666666666654432111
Q ss_pred ccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCC
Q 014560 176 EDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIK 255 (422)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~ 255 (422)
...++.++++++.+..+ ....+|+.|++++|.+..++..+ .++|+.|++++|.+.
T Consensus 191 -------------------l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~ 245 (597)
T 3oja_B 191 -------------------IPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLT 245 (597)
T ss_dssp -------------------CTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCC
T ss_pred -------------------hhhhhhhhcccCccccc----cCCchhheeeccCCccccccccc--CCCCCEEECCCCCCC
Confidence 12445555555544322 22346788888888777665433 357888888888777
Q ss_pred CCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCccccc
Q 014560 256 DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILR 335 (422)
Q Consensus 256 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~ 335 (422)
+. ..+..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+.+. +..+..+++|+.|++++|.+..+|..+..
T Consensus 246 ~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 322 (597)
T 3oja_B 246 DT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322 (597)
T ss_dssp CC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCCGGGHHH
T ss_pred CC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCccCccccc
Confidence 65 3357778888888888888777666677788888888888877764 33345677888888888888888777777
Q ss_pred CCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc
Q 014560 336 LQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 336 ~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
+++|+.|++++|.++.++ +..+++|+.|++++|.+.
T Consensus 323 l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358 (597)
T ss_dssp HTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCC
Confidence 888888888888887764 566778888888888764
No 36
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.1e-32 Score=261.77 Aligned_cols=312 Identities=21% Similarity=0.252 Sum_probs=149.6
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCc
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~ 80 (422)
.++.+++++..+|... .+++++|++++|.++.+ +..|.++++|++|++++|.++.+ |..|.++++|++|++++|.
T Consensus 15 ~v~c~~~~l~~ip~~~---~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 15 AVLCHRKRFVAVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EEECCSCCCSSCCSCC---CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcCcCCCCC---CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 4455555555555431 13556666666666554 34555566666666666655544 4555566666666666665
Q ss_pred CccCch-hhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCC
Q 014560 81 LSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNG 159 (422)
Q Consensus 81 i~~l~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (422)
++.+|. .|.++++|++|++++|.+..+. +..+..+++|++|++++|.+..+...
T Consensus 92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~---------------------~~~~~~l~~L~~L~l~~n~l~~~~~~---- 146 (477)
T 2id5_A 92 LKLIPLGVFTGLSNLTKLDISENKIVILL---------------------DYMFQDLYNLKSLEVGDNDLVYISHR---- 146 (477)
T ss_dssp CCSCCTTSSTTCTTCCEEECTTSCCCEEC---------------------TTTTTTCTTCCEEEECCTTCCEECTT----
T ss_pred CCccCcccccCCCCCCEEECCCCccccCC---------------------hhHccccccCCEEECCCCccceeChh----
Confidence 555543 2455556666665555554332 33455556666666665554332211
Q ss_pred CChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc-c
Q 014560 160 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-L 238 (422)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~ 238 (422)
.+..+++|++|++++|.++.++.. +
T Consensus 147 ------------------------------------------------------~~~~l~~L~~L~l~~n~l~~~~~~~l 172 (477)
T 2id5_A 147 ------------------------------------------------------AFSGLNSLEQLTLEKCNLTSIPTEAL 172 (477)
T ss_dssp ------------------------------------------------------SSTTCTTCCEEEEESCCCSSCCHHHH
T ss_pred ------------------------------------------------------hccCCCCCCEEECCCCcCcccChhHh
Confidence 122233444444444444443322 4
Q ss_pred cCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCc-CCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCc
Q 014560 239 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ 317 (422)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~ 317 (422)
..+++|+.|++++|.+...+...+..+++|+.|+++++.... ++.. .....+|+.|++++|.++......+..+++|+
T Consensus 173 ~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 251 (477)
T 2id5_A 173 SHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPN-CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251 (477)
T ss_dssp TTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTT-TTTTCCCSEEEEESSCCCSCCHHHHTTCTTCC
T ss_pred cccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcc-cccCccccEEECcCCcccccCHHHhcCccccC
Confidence 444444444444444444444334444444444444433222 2222 12223445555554444433333344444555
Q ss_pred eEEeCCCcCccCCc-ccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCC
Q 014560 318 ELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 395 (422)
Q Consensus 318 ~L~l~~~~i~~l~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 395 (422)
.|++++|.++.++. .+.++++|+.|++++|.++.+ |..|..+++|+.|++++|.++.++...+..+++|+.|++++|+
T Consensus 252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 252 FLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp EEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSC
T ss_pred eeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCC
Confidence 55555554443332 234445555555555555433 3344455555555555555554444443333455555555554
Q ss_pred CC
Q 014560 396 LR 397 (422)
Q Consensus 396 ~~ 397 (422)
+.
T Consensus 332 l~ 333 (477)
T 2id5_A 332 LA 333 (477)
T ss_dssp EE
T ss_pred cc
Confidence 43
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=9.2e-32 Score=252.31 Aligned_cols=326 Identities=21% Similarity=0.256 Sum_probs=226.9
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~ 80 (422)
|++|++++|++..++. +.++++|++|++++|.++.++ +..+++|++|++++|.++.++ +.++++|++|++++|.
T Consensus 44 L~~L~Ls~n~l~~~~~--l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 44 LTSLDCHNSSITDMTG--IEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp CCEEECCSSCCCCCTT--GGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCCEEECCSSC
T ss_pred CCEEEccCCCcccChh--hcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCCEEECCCCc
Confidence 5778888888887763 788888888888888887775 777888888888888887774 7778888888888888
Q ss_pred CccCchhhhCCCCCcEEEccCCcccccccccccc-eecEEEcCCCC-CCCCCccccccCCccEEEcCCCccccccccccC
Q 014560 81 LSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNS-LSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVN 158 (422)
Q Consensus 81 i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~ 158 (422)
++.++ +..+++|++|++++|.++.++ .... .|++|++++|. +..+ .+..+++|+.|++++|.++.++..
T Consensus 118 l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l~l~--- 188 (457)
T 3bz5_A 118 LTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITELDVS--- 188 (457)
T ss_dssp CSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCCCCT---
T ss_pred CCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccceeccc---
Confidence 88775 777888888888888887764 2333 38888888884 3334 467778888888888877654310
Q ss_pred CCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccc
Q 014560 159 GPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPEL 238 (422)
Q Consensus 159 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~ 238 (422)
....++.+++++|.+..++ +..+++|+.|++++|.++.+| +
T Consensus 189 -----------------------------------~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~ 229 (457)
T 3bz5_A 189 -----------------------------------QNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--V 229 (457)
T ss_dssp -----------------------------------TCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C
T ss_pred -----------------------------------cCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--c
Confidence 1246778888888777663 566778888888888888776 6
Q ss_pred cCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCC--------CCCCCCCccEEEccCCcCCCC-----
Q 014560 239 SSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSD--------GFKDIPMLQILDLSYNIASLP----- 305 (422)
Q Consensus 239 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------~~~~~~~L~~l~l~~~~~~~~----- 305 (422)
..+++|+.|++++|.+...+. ..+++|+.++++.+.+..+... .+..+++|+.|++++|...+.
T Consensus 230 ~~l~~L~~L~l~~N~l~~~~~---~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~ 306 (457)
T 3bz5_A 230 TPLTQLTYFDCSVNPLTELDV---STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306 (457)
T ss_dssp TTCTTCSEEECCSSCCSCCCC---TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTT
T ss_pred cccCCCCEEEeeCCcCCCcCH---HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCC
Confidence 777888888888888877663 3455565555555444332111 134567888888887754321
Q ss_pred ---CCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccC
Q 014560 306 ---ENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLL 382 (422)
Q Consensus 306 ---~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~ 382 (422)
..-.+..+++|+.|++++|.++.++ +.++++|+.|++++|.++.+ +.|..|++++|.+...+ ..
T Consensus 307 ~~L~~L~l~~~~~L~~L~L~~N~l~~l~--l~~l~~L~~L~l~~N~l~~l-------~~L~~L~l~~n~l~g~~----~~ 373 (457)
T 3bz5_A 307 AGITELDLSQNPKLVYLYLNNTELTELD--VSHNTKLKSLSCVNAHIQDF-------SSVGKIPALNNNFEAEG----QT 373 (457)
T ss_dssp CCCSCCCCTTCTTCCEEECTTCCCSCCC--CTTCTTCSEEECCSSCCCBC-------TTGGGSSGGGTSEEEEE----EE
T ss_pred CcceEechhhcccCCEEECCCCcccccc--cccCCcCcEEECCCCCCCCc-------cccccccccCCcEEecc----ee
Confidence 1123566778888888888888763 77788888888888888764 34455566666665431 22
Q ss_pred CccccEEEccCCCCC
Q 014560 383 EPSLQALRLDGNPLR 397 (422)
Q Consensus 383 ~~~L~~l~l~~n~~~ 397 (422)
..++.+++++|.++
T Consensus 374 -~~l~~l~l~~N~l~ 387 (457)
T 3bz5_A 374 -ITMPKETLTNNSLT 387 (457)
T ss_dssp -EECCCBCCBTTBEE
T ss_pred -eecCccccccCcEE
Confidence 45666666666654
No 38
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=2.9e-32 Score=258.86 Aligned_cols=292 Identities=23% Similarity=0.303 Sum_probs=237.5
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCCC-CCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~ 78 (422)
+++|+|++|++..++..+|.++++|++|++++|.+..+ +..|.++++|++|++++|.++.+|. .|.++++|++|++++
T Consensus 34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 113 (477)
T 2id5_A 34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISE 113 (477)
T ss_dssp CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTT
T ss_pred CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEECCC
Confidence 57999999999999888899999999999999999877 6889999999999999999998865 579999999999999
Q ss_pred CcCccC-chhhhCCCCCcEEEccCCccccccccc-ccc-eecEEEcCCCCCCCCCc-cccccCCccEEEcCCCccccccc
Q 014560 79 NALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEA-CQL-RLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 79 ~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~-~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~ 154 (422)
|.+..+ +..+..+++|++|++++|.+..+.... ... +|+.|++++|.++.++. .+..+++|+.|++++|.+..++.
T Consensus 114 n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~ 193 (477)
T 2id5_A 114 NKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRD 193 (477)
T ss_dssp SCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECT
T ss_pred CccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeCh
Confidence 999965 667999999999999999988765433 333 38888888888887654 47778888888888877654321
Q ss_pred cccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccc-c
Q 014560 155 SLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-E 233 (422)
Q Consensus 155 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~ 233 (422)
..+..+++|+.|++++|... .
T Consensus 194 ----------------------------------------------------------~~~~~l~~L~~L~l~~~~~~~~ 215 (477)
T 2id5_A 194 ----------------------------------------------------------YSFKRLYRLKVLEISHWPYLDT 215 (477)
T ss_dssp ----------------------------------------------------------TCSCSCTTCCEEEEECCTTCCE
T ss_pred ----------------------------------------------------------hhcccCcccceeeCCCCccccc
Confidence 12334567888888877543 3
Q ss_pred CCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCC
Q 014560 234 LPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSL 313 (422)
Q Consensus 234 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~ 313 (422)
++.......+|+.|++++|.+..++...+..+++|+.|++++|.+..+++..|..+++|+.|++++|.+.+..+..+..+
T Consensus 216 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 295 (477)
T 2id5_A 216 MTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295 (477)
T ss_dssp ECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTC
T ss_pred cCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCc
Confidence 55555555688888888888888887778888888888888888888877778888888888888888888777778888
Q ss_pred ccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCc
Q 014560 314 PHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 314 ~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~ 350 (422)
++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 296 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 296 NYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333 (477)
T ss_dssp TTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred ccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence 8888888888888877654 567788888888888766
No 39
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-32 Score=264.89 Aligned_cols=305 Identities=21% Similarity=0.272 Sum_probs=263.6
Q ss_pred ccccCCeEeccCCccccCCCC-CccCCCCCEEEcCCCcCccCc-hhhhCCCCCcEEEccCCccccccccc-ccce-ecEE
Q 014560 44 SLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVL 119 (422)
Q Consensus 44 ~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~-L~~L 119 (422)
.+.+++.++++++.+..+|.. +.++++|++|++++|.+..++ ..|..+++|++|++++|.+..+++.. .... |+.|
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 128 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL 128 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence 468999999999999988765 688999999999999999775 58999999999999999999888765 3444 9999
Q ss_pred EcCCCCCCCCCcc-ccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhcccccc
Q 014560 120 DLSNNSLSGLPPE-IGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTS 198 (422)
Q Consensus 120 ~l~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (422)
++++|.++.+|.. +..+++|++|++++|.++.++...+.. ..++
T Consensus 129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-----------------------------------l~~L 173 (597)
T 3oja_B 129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQA-----------------------------------TTSL 173 (597)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTT-----------------------------------CTTC
T ss_pred EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhc-----------------------------------CCcC
Confidence 9999999998776 589999999999999987665443321 2578
Q ss_pred ceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 199 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
+.+++++|.+..++ +..+++|+.|++++|.+..+ ...++|+.|++++|.+..++.. ..++|+.|++++|.+
T Consensus 174 ~~L~L~~N~l~~~~--~~~l~~L~~L~l~~n~l~~l----~~~~~L~~L~ls~n~l~~~~~~---~~~~L~~L~L~~n~l 244 (597)
T 3oja_B 174 QNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLSTL----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNL 244 (597)
T ss_dssp CEEECTTSCCSBCC--GGGCTTCSEEECCSSCCSEE----ECCTTCSEEECCSSCCCEEECS---CCSCCCEEECCSSCC
T ss_pred cEEECcCCCCCCcC--hhhhhhhhhhhcccCccccc----cCCchhheeeccCCcccccccc---cCCCCCEEECCCCCC
Confidence 99999999988775 45578999999999988754 3457899999999998876543 247899999999998
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcC
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKN 358 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~ 358 (422)
... ..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..
T Consensus 245 ~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~ 322 (597)
T 3oja_B 245 TDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQ 322 (597)
T ss_dssp CCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEEECSSSCCTTCCEEECCSSCCCCCGGGHHH
T ss_pred CCC--hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCCCcccccCCCCcEEECCCCCCCccCccccc
Confidence 875 347889999999999999998888889999999999999999999988888899999999999999999999999
Q ss_pred CCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCC
Q 014560 359 LTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 359 ~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
+++|+.|++++|.++.++ +..+ ++|+.|++++|++.
T Consensus 323 l~~L~~L~L~~N~l~~~~--~~~~-~~L~~L~l~~N~~~ 358 (597)
T 3oja_B 323 FDRLENLYLDHNSIVTLK--LSTH-HTLKNLTLSHNDWD 358 (597)
T ss_dssp HTTCSEEECCSSCCCCCC--CCTT-CCCSEEECCSSCEE
T ss_pred CCCCCEEECCCCCCCCcC--hhhc-CCCCEEEeeCCCCC
Confidence 999999999999999876 3444 89999999999975
No 40
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.4e-31 Score=260.85 Aligned_cols=395 Identities=22% Similarity=0.220 Sum_probs=273.3
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccCC-CCCccCCCCCEEEcCCCc
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIP-SSISGCCSLAEFYMGNNA 80 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l~-~~~~~~~~L~~L~l~~~~ 80 (422)
..+.++-+++.||.. + -+++++|+|++|.|+.++ .+|.++++|++|++++|.++.++ .+|.++++|++|+|++|.
T Consensus 35 ~~~c~~~~l~~vP~~-l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~ 111 (635)
T 4g8a_A 35 TYQCMELNFYKIPDN-L--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 111 (635)
T ss_dssp EEECTTSCCSSCCSS-S--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEECCCCCcCccCCC-C--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc
Confidence 456667778888865 2 147999999999999986 67999999999999999999884 579999999999999999
Q ss_pred CccCc-hhhhCCCCCcEEEccCCccccccccc-ccce-ecEEEcCCCCCCC--CCccccccCCccEEEcCCCcccccccc
Q 014560 81 LSALP-AELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSNNSLSG--LPPEIGKMTTLRKLLLTGNPLRTLRSS 155 (422)
Q Consensus 81 i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~-L~~L~l~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~ 155 (422)
++.+| ..|.++++|++|++++|.++.++... ...+ |++|++++|.+.. .+..+..+++|++|++++|.++.+...
T Consensus 112 l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 191 (635)
T 4g8a_A 112 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 191 (635)
T ss_dssp CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccc
Confidence 99886 46899999999999999999988754 3344 9999999999876 567789999999999999998776443
Q ss_pred ccCCCChHHHHHHHcc-----CCC--Ccc---cc------------ccchhhhHHHhhhccccc----------------
Q 014560 156 LVNGPTPALLKYLRSR-----LPE--NED---SE------------ASTTKEDLITMATRLSVT---------------- 197 (422)
Q Consensus 156 ~~~~~~~~~l~~~~~~-----~~~--~~~---~~------------~~~~~~~~~~~~~~~~~~---------------- 197 (422)
.+. .+...... +.. ... .. ..................
T Consensus 192 ~l~-----~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 266 (635)
T 4g8a_A 192 DLR-----VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 266 (635)
T ss_dssp GGH-----HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred ccc-----chhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccc
Confidence 221 11111100 000 000 00 000000000000000000
Q ss_pred -----------------------------------------cceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc
Q 014560 198 -----------------------------------------SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP 236 (422)
Q Consensus 198 -----------------------------------------l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~ 236 (422)
++.+.+.++.+..+. .+.....++.|++.++.+..++.
T Consensus 267 l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~ 345 (635)
T 4g8a_A 267 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK-DFSYNFGWQHLELVNCKFGQFPT 345 (635)
T ss_dssp CSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECG-GGGSCCCCSEEEEESCEESSCCC
T ss_pred cccccccccccccchhhhhhhhhhhcccccchhhhhhhhccccccccccccccccc-ccccchhhhhhhcccccccCcCc
Confidence 111111111111111 12223456777777665443221
Q ss_pred --------------------cccCCCCCcEEEecCCcCCCC--ChHHHhcCCCCCEEECCCC------------------
Q 014560 237 --------------------ELSSCASLQTLILSRNKIKDW--PDAILTSLSSLSCLKLDNN------------------ 276 (422)
Q Consensus 237 --------------------~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~------------------ 276 (422)
....+++|+.+++++|.+... .+..+..+.+|+.+++..+
T Consensus 346 ~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l 425 (635)
T 4g8a_A 346 LKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHL 425 (635)
T ss_dssp CBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEE
T ss_pred ccchhhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccch
Confidence 123467888888888766431 1222334445555554443
Q ss_pred -----CCCc-CCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc--cCCcccccCCCCcEEECCCCC
Q 014560 277 -----PLRQ-VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR--EAPTDILRLQQLRILDLSQNS 348 (422)
Q Consensus 277 -----~~~~-~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~--~l~~~~~~~~~L~~l~l~~n~ 348 (422)
.... .+...+..+++++.++++.|.+....+..+..+++++.|++++|.+. ..|..+..+++|+.|++++|.
T Consensus 426 ~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~ 505 (635)
T 4g8a_A 426 DFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 505 (635)
T ss_dssp ECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCc
Confidence 3222 22334666778888888888887777778888999999999999644 356778899999999999999
Q ss_pred Cccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 349 LQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 349 l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
++.+ |..|.++++|+.|+|++|+|+.++...+..+++|++|++++|+++.++++.|..
T Consensus 506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~ 564 (635)
T 4g8a_A 506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQH 564 (635)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTC
T ss_pred cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHh
Confidence 9977 667999999999999999999988876666699999999999999998877654
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.98 E-value=6.6e-31 Score=237.41 Aligned_cols=300 Identities=23% Similarity=0.293 Sum_probs=191.4
Q ss_pred cceecChhHHhhc-----ccccceecccccccCCchhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCcc
Q 014560 10 KLTVLSNNLIASW-----TMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSA 83 (422)
Q Consensus 10 ~i~~i~~~~~~~~-----~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~ 83 (422)
.+..+|......+ .++++++++++.++.+|..+. ++|++|++++|.+..+ |..|.++++|++|++++|.++.
T Consensus 15 ~l~~lp~~~~~~cp~~c~c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~ 92 (332)
T 2ft3_A 15 DLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92 (332)
T ss_dssp ----------CCCCSSCEEETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred ccccCCCcccCCCCCCCcccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCc
Confidence 3445555433333 267778888777777775553 5778888888877766 4467777888888888887775
Q ss_pred C-chhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCc-cccccCCccEEEcCCCccccccccccCCCC
Q 014560 84 L-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPT 161 (422)
Q Consensus 84 l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 161 (422)
+ |..+.++++|++|++++|.++.++.... ..|++|++++|.+..++. .+..+++|+.|++++|.++..+
T Consensus 93 ~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~-~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~-------- 163 (332)
T 2ft3_A 93 IHEKAFSPLRKLQKLYISKNHLVEIPPNLP-SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSG-------- 163 (332)
T ss_dssp ECGGGSTTCTTCCEEECCSSCCCSCCSSCC-TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGG--------
T ss_pred cCHhHhhCcCCCCEEECCCCcCCccCcccc-ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCC--------
Confidence 5 6667777888888887777776665544 346666666666666443 2555666666666665543210
Q ss_pred hHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCC
Q 014560 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSC 241 (422)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~ 241 (422)
..+..+..+
T Consensus 164 -----------------------------------------------------------------------~~~~~~~~l 172 (332)
T 2ft3_A 164 -----------------------------------------------------------------------FEPGAFDGL 172 (332)
T ss_dssp -----------------------------------------------------------------------SCTTSSCSC
T ss_pred -----------------------------------------------------------------------CCcccccCC
Confidence 012223333
Q ss_pred CCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEe
Q 014560 242 ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYL 321 (422)
Q Consensus 242 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 321 (422)
+|+.+++++|.+..++... .++|+.|++++|.+..+++..+..+++|+.|++++|.+.+..+..+..+++|+.|++
T Consensus 173 -~L~~L~l~~n~l~~l~~~~---~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L 248 (332)
T 2ft3_A 173 -KLNYLRISEAKLTGIPKDL---PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHL 248 (332)
T ss_dssp -CCSCCBCCSSBCSSCCSSS---CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEEC
T ss_pred -ccCEEECcCCCCCccCccc---cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEEC
Confidence 4444555555444443321 146666666666666666666677777777777777777766666777788888888
Q ss_pred CCCcCccCCcccccCCCCcEEECCCCCCcccCcc-CcC------CCCCCEEeCCCCCCc--ccCCccccCCccccEEEcc
Q 014560 322 RRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG-FKN------LTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLD 392 (422)
Q Consensus 322 ~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~------~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~l~l~ 392 (422)
++|.++.+|..+..+++|+.|++++|.++.++.. |.. ...++.|++++|.++ .++...+..+++|+.++++
T Consensus 249 ~~N~l~~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~ 328 (332)
T 2ft3_A 249 DNNKLSRVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFG 328 (332)
T ss_dssp CSSCCCBCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC-
T ss_pred CCCcCeecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcc
Confidence 8888888888788888888888888888876432 332 356888899988876 5666666666888888888
Q ss_pred CCC
Q 014560 393 GNP 395 (422)
Q Consensus 393 ~n~ 395 (422)
+|+
T Consensus 329 ~n~ 331 (332)
T 2ft3_A 329 NYK 331 (332)
T ss_dssp ---
T ss_pred ccc
Confidence 874
No 42
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.3e-30 Score=230.87 Aligned_cols=287 Identities=24% Similarity=0.320 Sum_probs=171.8
Q ss_pred cccceecccccccCCchhhhccccCCeEeccCCccccCCC-CCccCCCCCEEEcCCCcCccC-chhhhCCCCCcEEEccC
Q 014560 24 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHS 101 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~ 101 (422)
++++++++++.++.+|..+. ++|++|++++|.++.++. .|.++++|++|++++|.++.+ |..+..+++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 67777777777777765443 577777777777776643 577777777777777777765 66677777777777777
Q ss_pred CcccccccccccceecEEEcCCCCCCCCCc-cccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccc
Q 014560 102 NQLKEYCVEACQLRLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 180 (422)
Q Consensus 102 ~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (422)
|.++.++.... ..|+.|++++|.+..++. .+..+++|+.|++++|.+...+
T Consensus 110 n~l~~l~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------- 161 (330)
T 1xku_A 110 NQLKELPEKMP-KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSG--------------------------- 161 (330)
T ss_dssp SCCSBCCSSCC-TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGG---------------------------
T ss_pred CcCCccChhhc-ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccC---------------------------
Confidence 77776665443 346666666666655332 3555666666666555442110
Q ss_pred cchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChH
Q 014560 181 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA 260 (422)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 260 (422)
..+..+..+++|++|++++|.++.+|..+.
T Consensus 162 -----------------------------~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~--------------------- 191 (330)
T 1xku_A 162 -----------------------------IENGAFQGMKKLSYIRIADTNITTIPQGLP--------------------- 191 (330)
T ss_dssp -----------------------------BCTTGGGGCTTCCEEECCSSCCCSCCSSCC---------------------
T ss_pred -----------------------------cChhhccCCCCcCEEECCCCccccCCcccc---------------------
Confidence 011122333444555555544444433221
Q ss_pred HHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCc
Q 014560 261 ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLR 340 (422)
Q Consensus 261 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~ 340 (422)
++|+.|++++|.+..+++..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.+|..+..+++|+
T Consensus 192 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~L~ 266 (330)
T 1xku_A 192 -----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266 (330)
T ss_dssp -----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCC
T ss_pred -----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCCCcC
Confidence 445555555555554444445555555555555555555444455666666666666666666666666677777
Q ss_pred EEECCCCCCcccCcc-Cc------CCCCCCEEeCCCCCCc--ccCCccccCCccccEEEccCCC
Q 014560 341 ILDLSQNSLQSIPEG-FK------NLTSLTELDLSDNNIS--ALPPELGLLEPSLQALRLDGNP 395 (422)
Q Consensus 341 ~l~l~~n~l~~l~~~-~~------~~~~L~~L~l~~n~l~--~~~~~~~~~~~~L~~l~l~~n~ 395 (422)
.|++++|.++.++.. |. ..+.++.|++++|.+. .++...+.++++++.+++++|+
T Consensus 267 ~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 267 VVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp EEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred EEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 777777777765432 32 2367778888888775 3555555555788888888774
No 43
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=1.6e-29 Score=228.20 Aligned_cols=274 Identities=20% Similarity=0.304 Sum_probs=222.8
Q ss_pred ccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCch-hhhCCCCCcEEEccCCcccccccccccceecEEEcCCC
Q 014560 46 SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNN 124 (422)
Q Consensus 46 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~ 124 (422)
.+++.++++++.++.+|..+. +.++.|++++|.++.++. .+.++++|++|++++|.++.+
T Consensus 31 c~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~----------------- 91 (330)
T 1xku_A 31 CHLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKI----------------- 91 (330)
T ss_dssp EETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCB-----------------
T ss_pred CCCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCee-----------------
Confidence 378888888888888877653 678888888888887754 678888888888877765543
Q ss_pred CCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeecc
Q 014560 125 SLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLE 204 (422)
Q Consensus 125 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~ 204 (422)
.+..+..+++|++|++++|.++.++
T Consensus 92 ----~~~~~~~l~~L~~L~Ls~n~l~~l~--------------------------------------------------- 116 (330)
T 1xku_A 92 ----SPGAFAPLVKLERLYLSKNQLKELP--------------------------------------------------- 116 (330)
T ss_dssp ----CTTTTTTCTTCCEEECCSSCCSBCC---------------------------------------------------
T ss_pred ----CHHHhcCCCCCCEEECCCCcCCccC---------------------------------------------------
Confidence 2446778888999988888765432
Q ss_pred CCCCCCCCcccccCCCccEEeCCCCccccCCcc-ccCCCCCcEEEecCCcCCC--CChHHHhcCCCCCEEECCCCCCCcC
Q 014560 205 GMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD--WPDAILTSLSSLSCLKLDNNPLRQV 281 (422)
Q Consensus 205 ~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~ 281 (422)
..+. ++|++|++++|.+..++.. +.++++|+.+++++|.+.. ..+..+..+++|+.|++++|.+..+
T Consensus 117 --------~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 117 --------EKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp --------SSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred --------hhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 1111 4788888888888876654 7889999999999998764 5556678899999999999999888
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc-ccccCCCCcEEECCCCCCcccCccCcCCC
Q 014560 282 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIPEGFKNLT 360 (422)
Q Consensus 282 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~l~l~~n~l~~l~~~~~~~~ 360 (422)
+... .++|+.|++++|.+++..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.+|..+..++
T Consensus 187 ~~~~---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~l~ 263 (330)
T 1xku_A 187 PQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHK 263 (330)
T ss_dssp CSSC---CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTTCS
T ss_pred Cccc---cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhccCC
Confidence 7653 2899999999999998888889999999999999999997654 68889999999999999999999999999
Q ss_pred CCCEEeCCCCCCcccCCccccC------CccccEEEccCCCCCc--cchHHHhh
Q 014560 361 SLTELDLSDNNISALPPELGLL------EPSLQALRLDGNPLRS--IRRTILDR 406 (422)
Q Consensus 361 ~L~~L~l~~n~l~~~~~~~~~~------~~~L~~l~l~~n~~~~--i~~~~~~~ 406 (422)
+|+.|++++|.|+.++...+.. .++++.+++.+|++.. +++..|..
T Consensus 264 ~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~ 317 (330)
T 1xku_A 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317 (330)
T ss_dssp SCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTT
T ss_pred CcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccc
Confidence 9999999999999888776632 2688999999999865 66666654
No 44
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.8e-33 Score=266.34 Aligned_cols=368 Identities=20% Similarity=0.203 Sum_probs=274.5
Q ss_pred CceeeccCCcceecChh-HHhhcccccceeccccccc-----CCchhhhccccCCeEeccCCccccC-CCC-CccCC---
Q 014560 1 MSKLDVEGNKLTVLSNN-LIASWTMLTELIASKNLLN-----GMPETIGSLSRLIRLDLHQNRILSI-PSS-ISGCC--- 69 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~-~~~~~~~L~~L~l~~~~i~-----~~~~~~~~~~~L~~L~l~~~~~~~l-~~~-~~~~~--- 69 (422)
|++||+++|+++..+.. .+..+++|++|++++|.++ .++..+..+++|++|++++|.+... +.. +..++
T Consensus 5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~ 84 (461)
T 1z7x_W 5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPS 84 (461)
T ss_dssp EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTT
T ss_pred ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCC
Confidence 57899999999876544 3889999999999999997 3467788899999999999988632 212 23344
Q ss_pred -CCCEEEcCCCcCc-----cCchhhhCCCCCcEEEccCCccccccc-----ccc--cceecEEEcCCCCCCC-----CCc
Q 014560 70 -SLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCV-----EAC--QLRLSVLDLSNNSLSG-----LPP 131 (422)
Q Consensus 70 -~L~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~l~~-----~~~--~~~L~~L~l~~~~~~~-----~~~ 131 (422)
+|++|++++|.++ .++..+..+++|++|++++|.+.+... ... ..+|++|++++|.++. ++.
T Consensus 85 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~ 164 (461)
T 1z7x_W 85 CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164 (461)
T ss_dssp CCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHH
Confidence 7999999999988 457889999999999999999874321 211 1249999999999876 345
Q ss_pred cccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCC-
Q 014560 132 EIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA- 210 (422)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~- 210 (422)
.+..+++|++|++++|.+....... ...........++.+++++|.+..
T Consensus 165 ~l~~~~~L~~L~L~~n~i~~~~~~~------------------------------l~~~l~~~~~~L~~L~L~~n~l~~~ 214 (461)
T 1z7x_W 165 VLRAKPDFKELTVSNNDINEAGVRV------------------------------LCQGLKDSPCQLEALKLESCGVTSD 214 (461)
T ss_dssp HHHHCTTCCEEECCSSBCHHHHHHH------------------------------HHHHHHHSCCCCCEEECTTSCCBTT
T ss_pred HHhhCCCCCEEECcCCCcchHHHHH------------------------------HHHHHhcCCCCceEEEccCCCCcHH
Confidence 5778899999999999875321111 111112223588999999998875
Q ss_pred ----CCcccccCCCccEEeCCCCccccC-----Cc-cccCCCCCcEEEecCCcCCCCC----hHHHhcCCCCCEEECCCC
Q 014560 211 ----IPSEIWEAGEITKLDLSRNSIQEL-----PP-ELSSCASLQTLILSRNKIKDWP----DAILTSLSSLSCLKLDNN 276 (422)
Q Consensus 211 ----~~~~~~~~~~L~~L~l~~~~l~~~-----~~-~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~ 276 (422)
++..+..+++|++|++++|.+... .+ .+..+++|++|++++|.++... ...+..+++|+.|++++|
T Consensus 215 ~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 294 (461)
T 1z7x_W 215 NCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGN 294 (461)
T ss_dssp HHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTC
T ss_pred HHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCC
Confidence 455666789999999999987652 12 2346899999999999888742 234567899999999999
Q ss_pred CCCcCCCCC-----CCCCCCccEEEccCCcCCCCC----CCCCCCCccCceEEeCCCcCccC-Ccccc----c-CCCCcE
Q 014560 277 PLRQVPSDG-----FKDIPMLQILDLSYNIASLPE----NPPFSSLPHLQELYLRRMQLREA-PTDIL----R-LQQLRI 341 (422)
Q Consensus 277 ~~~~~~~~~-----~~~~~~L~~l~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~i~~l-~~~~~----~-~~~L~~ 341 (422)
.+....... ....++|+.|++++|.+++.. +..+..+++|++|++++|.++.. +..+. . .++|+.
T Consensus 295 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~ 374 (461)
T 1z7x_W 295 ELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRV 374 (461)
T ss_dssp CCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCE
T ss_pred CCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEE
Confidence 876432211 223479999999999887542 23355679999999999988743 22222 2 679999
Q ss_pred EECCCCCCc-----ccCccCcCCCCCCEEeCCCCCCccc-----CCccccCCccccEEEccCCCCCc
Q 014560 342 LDLSQNSLQ-----SIPEGFKNLTSLTELDLSDNNISAL-----PPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 342 l~l~~n~l~-----~l~~~~~~~~~L~~L~l~~n~l~~~-----~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
|++++|.++ .+|..+..+++|+.|++++|.++.. ...+.....+|+.|.+.++.+..
T Consensus 375 L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 375 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 999999998 5788888899999999999998732 12222222579999999988763
No 45
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=3.9e-29 Score=225.80 Aligned_cols=285 Identities=22% Similarity=0.328 Sum_probs=206.7
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
++.++++++.+..+|... .++|++|++++|.+..+ +..+.++++|++|++++|.++.+ |..|.++++|++|++++
T Consensus 35 l~~l~~~~~~l~~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 111 (332)
T 2ft3_A 35 LRVVQCSDLGLKAVPKEI---SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111 (332)
T ss_dssp TTEEECCSSCCSSCCSCC---CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCS
T ss_pred CCEEECCCCCccccCCCC---CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCC
Confidence 578999999999999763 36899999999999887 46899999999999999999976 77899999999999999
Q ss_pred CcCccCchhhhCCCCCcEEEccCCccccccccc-ccce-ecEEEcCCCCCCC---CCccccccCCccEEEcCCCcccccc
Q 014560 79 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEA-CQLR-LSVLDLSNNSLSG---LPPEIGKMTTLRKLLLTGNPLRTLR 153 (422)
Q Consensus 79 ~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~-~~~~-L~~L~l~~~~~~~---~~~~~~~l~~L~~L~l~~~~~~~~~ 153 (422)
|.++.+|..+. ++|++|++++|.+..++... .... |+.|++++|.++. .+..+..+ +|+.|++++|.++.++
T Consensus 112 n~l~~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~ 188 (332)
T 2ft3_A 112 NHLVEIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIP 188 (332)
T ss_dssp SCCCSCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCC
T ss_pred CcCCccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccC
Confidence 99999987665 89999999999999888753 3334 9999999999863 45556666 8888888887764432
Q ss_pred ccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCcccc
Q 014560 154 SSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE 233 (422)
Q Consensus 154 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~ 233 (422)
..+. ++|++|++++|.++.
T Consensus 189 -----------------------------------------------------------~~~~--~~L~~L~l~~n~i~~ 207 (332)
T 2ft3_A 189 -----------------------------------------------------------KDLP--ETLNELHLDHNKIQA 207 (332)
T ss_dssp -----------------------------------------------------------SSSC--SSCSCCBCCSSCCCC
T ss_pred -----------------------------------------------------------cccc--CCCCEEECCCCcCCc
Confidence 2111 467777777777776
Q ss_pred CC-ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCC
Q 014560 234 LP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 312 (422)
Q Consensus 234 ~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 312 (422)
++ ..+..+++|+.|++++|.+...++..+..+++|+.|++++|.+..++.. +..+++|+.|++++|.++......+..
T Consensus 208 ~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~-l~~l~~L~~L~l~~N~l~~~~~~~~~~ 286 (332)
T 2ft3_A 208 IELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG-LPDLKLLQVVYLHTNNITKVGVNDFCP 286 (332)
T ss_dssp CCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTT-GGGCTTCCEEECCSSCCCBCCTTSSSC
T ss_pred cCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChh-hhcCccCCEEECCCCCCCccChhHccc
Confidence 54 4577777888888888877777766677777888888887777766554 666677777777777666554444432
Q ss_pred CccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCc--cc-CccCcCCCCCCEEeCCCC
Q 014560 313 LPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SI-PEGFKNLTSLTELDLSDN 370 (422)
Q Consensus 313 ~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~--~l-~~~~~~~~~L~~L~l~~n 370 (422)
.. .....+.|+.+++++|.+. .+ |..|..+++|+.+++++|
T Consensus 287 ~~-----------------~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 287 VG-----------------FGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp SS-----------------CCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred cc-----------------cccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 10 0001244555666666554 22 344566666666666655
No 46
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.7e-26 Score=222.82 Aligned_cols=257 Identities=26% Similarity=0.286 Sum_probs=153.6
Q ss_pred cccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCc
Q 014560 24 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 103 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~ 103 (422)
++++|+++++.++.+|..+. ++|++|++++|.++.+|. .+++|++|++++|.++.+|. .+++|++|++++|.
T Consensus 41 ~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNP 112 (622)
T ss_dssp CCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC---CCTTCCEEEECSCC
T ss_pred CCcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC---CCCCCCEEECcCCc
Confidence 45666666666666554443 466666666666665554 34566666666666665554 45566666666665
Q ss_pred ccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccch
Q 014560 104 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 183 (422)
Q Consensus 104 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (422)
++.++. ....|+.|++++|.++.+|.. +++|++|++++|.+
T Consensus 113 l~~l~~--~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l---------------------------------- 153 (622)
T 3g06_A 113 LTHLPA--LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQL---------------------------------- 153 (622)
T ss_dssp CCCCCC--CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCC----------------------------------
T ss_pred CCCCCC--CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcC----------------------------------
Confidence 555544 222355555555555554432 24455555544443
Q ss_pred hhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh
Q 014560 184 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 263 (422)
Q Consensus 184 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (422)
..++. .+.+|+.|++++|.++.+| ..+++|+.|++++|.+..++.
T Consensus 154 -------------------------~~l~~---~~~~L~~L~L~~N~l~~l~---~~~~~L~~L~Ls~N~l~~l~~---- 198 (622)
T 3g06_A 154 -------------------------ASLPA---LPSELCKLWAYNNQLTSLP---MLPSGLQELSVSDNQLASLPT---- 198 (622)
T ss_dssp -------------------------SCCCC---CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC----
T ss_pred -------------------------CCcCC---ccCCCCEEECCCCCCCCCc---ccCCCCcEEECCCCCCCCCCC----
Confidence 22222 1246677777777777666 345677777777777766553
Q ss_pred cCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEE
Q 014560 264 SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILD 343 (422)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~ 343 (422)
..++|+.|++++|.+..++. .+++|+.|++++|.+++.. ..+++|+.|++++|.++.+|. .+++|+.|+
T Consensus 199 ~~~~L~~L~L~~N~l~~l~~----~~~~L~~L~Ls~N~L~~lp----~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~ 267 (622)
T 3g06_A 199 LPSELYKLWAYNNRLTSLPA----LPSGLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPM---LPSGLLSLS 267 (622)
T ss_dssp CCTTCCEEECCSSCCSSCCC----CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCC---CCTTCCEEE
T ss_pred ccchhhEEECcCCcccccCC----CCCCCCEEEccCCccCcCC----CCCCcCcEEECCCCCCCcCCc---ccccCcEEe
Confidence 23667777777777666553 2366777777777666543 334666777777776666665 456677777
Q ss_pred CCCCCCcccCccCcCCCCCCEEeCCCCCCc
Q 014560 344 LSQNSLQSIPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 344 l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
+++|.++.+|..+.++++|+.|++++|.++
T Consensus 268 Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 268 VYRNQLTRLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCSSCCCSCCGGGGGSCTTCEEECCSCCCC
T ss_pred CCCCCCCcCCHHHhhccccCEEEecCCCCC
Confidence 777777766666666677777777777665
No 47
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.96 E-value=1.1e-26 Score=224.18 Aligned_cols=158 Identities=27% Similarity=0.312 Sum_probs=74.3
Q ss_pred CccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccC
Q 014560 220 EITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSY 299 (422)
Q Consensus 220 ~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~ 299 (422)
+|++|++++|.++.+|. .+++|+.|++++|.+..++ ..+++|+.|++++|.+..++.. +++|+.|++++
T Consensus 142 ~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~l~----~~~~~L~~L~Ls~N~l~~l~~~----~~~L~~L~L~~ 210 (622)
T 3g06_A 142 GLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTSLP----MLPSGLQELSVSDNQLASLPTL----PSELYKLWAYN 210 (622)
T ss_dssp TCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCS
T ss_pred CCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCCCc----ccCCCCcEEECCCCCCCCCCCc----cchhhEEECcC
Confidence 44555555555444432 1234555555555554443 2234555555555554444321 24455555555
Q ss_pred CcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCcc
Q 014560 300 NIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPEL 379 (422)
Q Consensus 300 ~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~ 379 (422)
|.++.... .+++|+.|++++|.++.+| ..+++|+.|++++|.++.+|. .+++|+.|++++|.|+.+|..+
T Consensus 211 N~l~~l~~----~~~~L~~L~Ls~N~L~~lp---~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~L~~lp~~l 280 (622)
T 3g06_A 211 NRLTSLPA----LPSGLKELIVSGNRLTSLP---VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQLTRLPESL 280 (622)
T ss_dssp SCCSSCCC----CCTTCCEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCCSCCGGG
T ss_pred CcccccCC----CCCCCCEEEccCCccCcCC---CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCCCCcCCHHH
Confidence 54443321 1244555555555555444 223445555555555554444 3344555555555555554444
Q ss_pred ccCCccccEEEccCCCCCcc
Q 014560 380 GLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 380 ~~~~~~L~~l~l~~n~~~~i 399 (422)
..+ ++|+.|++++|++...
T Consensus 281 ~~l-~~L~~L~L~~N~l~~~ 299 (622)
T 3g06_A 281 IHL-SSETTVNLEGNPLSER 299 (622)
T ss_dssp GGS-CTTCEEECCSCCCCHH
T ss_pred hhc-cccCEEEecCCCCCCc
Confidence 444 5555555555554433
No 48
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.95 E-value=1.4e-30 Score=246.34 Aligned_cols=351 Identities=22% Similarity=0.178 Sum_probs=258.4
Q ss_pred ccccceecccccccCCc--hhhhccccCCeEeccCCccc-----cCCCCCccCCCCCEEEcCCCcCccC-chh-hhCCC-
Q 014560 23 TMLTELIASKNLLNGMP--ETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALSAL-PAE-LGKLS- 92 (422)
Q Consensus 23 ~~L~~L~l~~~~i~~~~--~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~i~~l-~~~-l~~~~- 92 (422)
+.|++|+++++.++..+ ..+..+++|++|++++|.+. .++..+..+++|++|++++|.++.. +.. ...++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 57899999999997653 34788999999999999987 4567788899999999999998742 222 33455
Q ss_pred ---CCcEEEccCCcccc-----cccccccce-ecEEEcCCCCCCC-CCccc-----cccCCccEEEcCCCcccccccccc
Q 014560 93 ---KLGTLDLHSNQLKE-----YCVEACQLR-LSVLDLSNNSLSG-LPPEI-----GKMTTLRKLLLTGNPLRTLRSSLV 157 (422)
Q Consensus 93 ---~L~~L~l~~~~~~~-----l~~~~~~~~-L~~L~l~~~~~~~-~~~~~-----~~l~~L~~L~l~~~~~~~~~~~~~ 157 (422)
+|++|++++|.+.. ++..+...+ |++|++++|.+.. .+..+ ...++|++|++++|.++.....
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~-- 160 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-- 160 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHH--
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHH--
Confidence 79999999999883 444444444 9999999998765 12222 2356899999999987543211
Q ss_pred CCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCC-cccc-----cCCCccEEeCCCCcc
Q 014560 158 NGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIP-SEIW-----EAGEITKLDLSRNSI 231 (422)
Q Consensus 158 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~-~~~~-----~~~~L~~L~l~~~~l 231 (422)
.+.........++.++++++.+.... ..+. ..++|++|++++|.+
T Consensus 161 -----------------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 211 (461)
T 1z7x_W 161 -----------------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211 (461)
T ss_dssp -----------------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCC
T ss_pred -----------------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCC
Confidence 01111222358899999998865321 1121 246999999999998
Q ss_pred cc-----CCccccCCCCCcEEEecCCcCCCCC-----hHHHhcCCCCCEEECCCCCCCcCC----CCCCCCCCCccEEEc
Q 014560 232 QE-----LPPELSSCASLQTLILSRNKIKDWP-----DAILTSLSSLSCLKLDNNPLRQVP----SDGFKDIPMLQILDL 297 (422)
Q Consensus 232 ~~-----~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~l~l 297 (422)
+. ++..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|.++... +..+..+++|+.|++
T Consensus 212 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L 291 (461)
T 1z7x_W 212 TSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSL 291 (461)
T ss_dssp BTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEEC
T ss_pred cHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEEC
Confidence 86 4666778999999999999877643 222235889999999999888632 223566899999999
Q ss_pred cCCcCCCCCCCCC-----CCCccCceEEeCCCcCcc-----CCcccccCCCCcEEECCCCCCccc-----CccCcC-CCC
Q 014560 298 SYNIASLPENPPF-----SSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQSI-----PEGFKN-LTS 361 (422)
Q Consensus 298 ~~~~~~~~~~~~~-----~~~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~l~l~~n~l~~l-----~~~~~~-~~~ 361 (422)
++|.+++.....+ ...++|++|++++|.++. ++..+..+++|+.|++++|.++.. ...+.. +++
T Consensus 292 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~ 371 (461)
T 1z7x_W 292 AGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSV 371 (461)
T ss_dssp TTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCC
T ss_pred CCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCc
Confidence 9998764322222 233699999999999884 455567789999999999998743 233333 679
Q ss_pred CCEEeCCCCCCc-----ccCCccccCCccccEEEccCCCCCccchHHHh
Q 014560 362 LTELDLSDNNIS-----ALPPELGLLEPSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 362 L~~L~l~~n~l~-----~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
|+.|++++|.++ .++..+..+ ++|++|++++|++...+...+.
T Consensus 372 L~~L~L~~n~i~~~~~~~l~~~l~~~-~~L~~L~l~~N~i~~~~~~~l~ 419 (461)
T 1z7x_W 372 LRVLWLADCDVSDSSCSSLAATLLAN-HSLRELDLSNNCLGDAGILQLV 419 (461)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHHHC-CCCCEEECCSSSCCHHHHHHHH
T ss_pred eEEEECCCCCCChhhHHHHHHHHHhC-CCccEEECCCCCCCHHHHHHHH
Confidence 999999999998 677767666 9999999999999865544443
No 49
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=6e-27 Score=213.32 Aligned_cols=277 Identities=21% Similarity=0.188 Sum_probs=160.0
Q ss_pred hccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCch-hhhCCCCCcEEEccCCcccccccccccceecEEEc
Q 014560 43 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPA-ELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDL 121 (422)
Q Consensus 43 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~-~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l 121 (422)
..|+.....+++++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.+++.
T Consensus 28 ~~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~----------- 94 (353)
T 2z80_A 28 LSCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEED----------- 94 (353)
T ss_dssp CEECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTT-----------
T ss_pred CCCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHh-----------
Confidence 345555566777777777776553 467777777777776654 577777777777777766654322
Q ss_pred CCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhcccccccee
Q 014560 122 SNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKEL 201 (422)
Q Consensus 122 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 201 (422)
.+..+++|++|++++|.++.++..
T Consensus 95 ----------~~~~l~~L~~L~Ls~n~l~~~~~~---------------------------------------------- 118 (353)
T 2z80_A 95 ----------SFSSLGSLEHLDLSYNYLSNLSSS---------------------------------------------- 118 (353)
T ss_dssp ----------TTTTCTTCCEEECCSSCCSSCCHH----------------------------------------------
T ss_pred ----------hcCCCCCCCEEECCCCcCCcCCHh----------------------------------------------
Confidence 233444444444444433221100
Q ss_pred eccCCCCCCCCcccccCCCccEEeCCCCccccCCc--cccCCCCCcEEEecCC-cCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 202 SLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRN-KIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 202 ~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
.+..+++|++|++++|.++.++. .+..+++|++|++++| .+..+++..+..+++|+.|++++|.+
T Consensus 119 ------------~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l 186 (353)
T 2z80_A 119 ------------WFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDL 186 (353)
T ss_dssp ------------HHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTC
T ss_pred ------------HhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCc
Confidence 01223344444444444444443 3445555555555555 24444444445555555555555555
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc----cccCCCCcEEECCCCCCc----
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQ---- 350 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~----~~~~~~L~~l~l~~n~l~---- 350 (422)
....+..+..+++|+.|++++|.+.......+..+++|+.|++++|.++..+.. ....+.++.++++++.++
T Consensus 187 ~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l 266 (353)
T 2z80_A 187 QSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESL 266 (353)
T ss_dssp CEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHH
T ss_pred CccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcch
Confidence 555444455555555555555554433222233355566666666655543211 123456677777777665
Q ss_pred -ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccc
Q 014560 351 -SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 351 -~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
.+|..+.++++|+.|++++|+++.+|..++..+++|++|++++|++..-.
T Consensus 267 ~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~~~~ 317 (353)
T 2z80_A 267 FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 317 (353)
T ss_dssp HHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred hhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCccCcC
Confidence 46777888889999999999988888887544488999999999887543
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=4.3e-26 Score=203.53 Aligned_cols=182 Identities=26% Similarity=0.333 Sum_probs=136.7
Q ss_pred cCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCCh-HHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEE
Q 014560 217 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQIL 295 (422)
Q Consensus 217 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l 295 (422)
.+++|++|++++|.+..++..+..+++|++|++++|.+...+. ..+..+++|+.|++++|.+....+..+..+++|+.|
T Consensus 76 ~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 155 (306)
T 2z66_A 76 GTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 155 (306)
T ss_dssp SCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEE
T ss_pred cccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEE
Confidence 3567777777777777777667777888888888877777654 456777888888888887777666667778888888
Q ss_pred EccCCcCCC-CCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCC
Q 014560 296 DLSYNIASL-PENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNI 372 (422)
Q Consensus 296 ~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l 372 (422)
++++|.+.+ ..+..+..+++|+.|++++|.++.+ +..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+
T Consensus 156 ~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 235 (306)
T 2z66_A 156 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHI 235 (306)
T ss_dssp ECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCC
T ss_pred ECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCC
Confidence 888887765 4556677788888888888888865 5567778888888888888887654 577788888888888888
Q ss_pred cccC-CccccCCccccEEEccCCCCCc
Q 014560 373 SALP-PELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 373 ~~~~-~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
+..+ ..+....++|++|++++|++..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cccCHHHHHhhhccCCEEEccCCCeec
Confidence 7544 3444442488888888888764
No 51
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.94 E-value=3e-26 Score=208.69 Aligned_cols=272 Identities=22% Similarity=0.328 Sum_probs=197.1
Q ss_pred hcccccceecccccccCCchhhhccccCCeEeccCCccccCCC-CCccCCCCCEEEcCCCcCccC-chhhhCCCCCcEEE
Q 014560 21 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLD 98 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~ 98 (422)
.|+...+.+++++.++.+|..+. ++|++|++++|.++.++. .+.++++|++|++++|.++.+ +..+.++++|++|+
T Consensus 29 ~C~~~~~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 29 SCDRNGICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp EECTTSEEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCCeEeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 45566667788888888876554 478888888888887754 678888888888888888866 45688888888888
Q ss_pred ccCCcccccccc-cccc-eecEEEcCCCCCCCCCc--cccccCCccEEEcCCCc-cccccccccCCCChHHHHHHHccCC
Q 014560 99 LHSNQLKEYCVE-ACQL-RLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLP 173 (422)
Q Consensus 99 l~~~~~~~l~~~-~~~~-~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (422)
+++|.++.++.. +... +|++|++++|.+..++. .+..+++|++|++++|. +..++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~-------------------- 166 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ-------------------- 166 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC--------------------
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC--------------------
Confidence 888888877665 2333 37777777777777665 57778888888887773 32221
Q ss_pred CCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCC
Q 014560 174 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRN 252 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~ 252 (422)
+..+..+++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 167 --------------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 208 (353)
T 2z80_A 167 --------------------------------------RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMK 208 (353)
T ss_dssp --------------------------------------TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECS
T ss_pred --------------------------------------HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCC
Confidence 12344567888888888888774 666888889999999988
Q ss_pred cCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc-----
Q 014560 253 KIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR----- 327 (422)
Q Consensus 253 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~----- 327 (422)
.+...+...+..+++|+.|++++|.+...+...+.. ....+.++.+++.++.+.
T Consensus 209 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~ 267 (353)
T 2z80_A 209 QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLF 267 (353)
T ss_dssp CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHH
T ss_pred ccccchhhhhhhcccccEEECCCCcccccccccccc---------------------ccccchhhccccccccccCcchh
Confidence 887777766667888888888888877665432221 112233444555554444
Q ss_pred cCCcccccCCCCcEEECCCCCCcccCcc-CcCCCCCCEEeCCCCCCc
Q 014560 328 EAPTDILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 328 ~l~~~~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l~ 373 (422)
.+|..+..+++|+.|++++|.++.+|.. |..+++|+.|++++|.+.
T Consensus 268 ~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~ 314 (353)
T 2z80_A 268 QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 314 (353)
T ss_dssp HHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred hhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence 5666778888999999999999888876 588899999999998876
No 52
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.94 E-value=8.4e-26 Score=201.63 Aligned_cols=240 Identities=24% Similarity=0.283 Sum_probs=121.5
Q ss_pred cceecccccccCCchhhhccccCCeEeccCCccccCCCC-CccCCCCCEEEcCCCcCccC---chhhhCCCCCcEEEccC
Q 014560 26 TELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHS 101 (422)
Q Consensus 26 ~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~~i~~l---~~~l~~~~~L~~L~l~~ 101 (422)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. |.++++|++|++++|.++.+ +..+..+++|++|++++
T Consensus 10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 355666666666665432 4666777777666666543 56666777777776666533 45556666677777766
Q ss_pred Ccccccccccccce-ecEEEcCCCCCCCCC--ccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccc
Q 014560 102 NQLKEYCVEACQLR-LSVLDLSNNSLSGLP--PEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 178 (422)
Q Consensus 102 ~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 178 (422)
|.+..++..+.... |+.|++++|.+..++ ..+..+++|++|++++|.+....
T Consensus 88 n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------- 142 (306)
T 2z66_A 88 NGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF------------------------- 142 (306)
T ss_dssp CSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS-------------------------
T ss_pred CccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc-------------------------
Confidence 66665544333332 444444444444432 23445555555555555432210
Q ss_pred cccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCcccc--CCccccCCCCCcEEEecCCcCCC
Q 014560 179 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKD 256 (422)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~ 256 (422)
+..+..+++|++|++++|.+.. +|..+..+++|+.|++++|.+..
T Consensus 143 ---------------------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 189 (306)
T 2z66_A 143 ---------------------------------NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 189 (306)
T ss_dssp ---------------------------------TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred ---------------------------------hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCC
Confidence 1112233455555555555543 34445555555555555555554
Q ss_pred CChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCc-cCceEEeCCCc
Q 014560 257 WPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP-HLQELYLRRMQ 325 (422)
Q Consensus 257 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~~~ 325 (422)
.++..+..+++|+.|++++|.+..+++..+..+++|+.|++++|.+.+..+..+..++ +|+.|++++|.
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 4444444445555555555554444443344444444444444444444333333332 34444444443
No 53
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.94 E-value=3.8e-25 Score=208.18 Aligned_cols=197 Identities=25% Similarity=0.328 Sum_probs=162.1
Q ss_pred cccCCCccEEeCCCCccccCCcc-ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC-CCCCcCCCCCCCCCCCc
Q 014560 215 IWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPML 292 (422)
Q Consensus 215 ~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L 292 (422)
+..+++|++|++++|.++.++.. |..+++|++|++++|.+..++...|..+++|+.|++++ +.+..++...|..+++|
T Consensus 119 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L 198 (452)
T 3zyi_A 119 FNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198 (452)
T ss_dssp TTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTC
T ss_pred ccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCC
Confidence 34467888888888888887655 77888999999999988888887788899999999988 46667777778899999
Q ss_pred cEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCC
Q 014560 293 QILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDN 370 (422)
Q Consensus 293 ~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n 370 (422)
+.|++++|.+.+.. .+..+++|+.|++++|.++.+ +..+.++++|+.|++++|.++.+ +..|..+++|+.|++++|
T Consensus 199 ~~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 276 (452)
T 3zyi_A 199 KYLNLGMCNIKDMP--NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN 276 (452)
T ss_dssp CEEECTTSCCSSCC--CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcccccc--cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC
Confidence 99999999888763 478889999999999999966 55688999999999999999976 566899999999999999
Q ss_pred CCcccCCccccCCccccEEEccCCCCCccchHHHhhhHHHHHHHHHhhC
Q 014560 371 NISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 419 (422)
Q Consensus 371 ~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~~~~~~~~~~~~~~ 419 (422)
+++.++...+..+++|+.|++++|++.. +.....+..|+++..
T Consensus 277 ~l~~~~~~~~~~l~~L~~L~L~~Np~~C------dC~~~~l~~~l~~~~ 319 (452)
T 3zyi_A 277 NLSSLPHDLFTPLRYLVELHLHHNPWNC------DCDILWLAWWLREYI 319 (452)
T ss_dssp CCSCCCTTSSTTCTTCCEEECCSSCEEC------STTTHHHHHHHHHHC
T ss_pred cCCccChHHhccccCCCEEEccCCCcCC------CCCchHHHHHHHHhC
Confidence 9999988877666999999999999863 233334455555543
No 54
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=2e-26 Score=205.78 Aligned_cols=244 Identities=25% Similarity=0.349 Sum_probs=127.1
Q ss_pred ccCCeEeccCCccc---cCCCCCccCCCCCEEEcCC-CcCc-cCchhhhCCCCCcEEEccCCcccccccccccceecEEE
Q 014560 46 SRLIRLDLHQNRIL---SIPSSISGCCSLAEFYMGN-NALS-ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLD 120 (422)
Q Consensus 46 ~~L~~L~l~~~~~~---~l~~~~~~~~~L~~L~l~~-~~i~-~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~ 120 (422)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.+..
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~-------------- 115 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG-------------- 115 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEE--------------
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCC--------------
Confidence 45666666666665 3566666666666666663 5554 556666666666666666655441
Q ss_pred cCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccce
Q 014560 121 LSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKE 200 (422)
Q Consensus 121 l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 200 (422)
.+|..+..+++|++|++++|.+..
T Consensus 116 -------~~p~~~~~l~~L~~L~Ls~N~l~~------------------------------------------------- 139 (313)
T 1ogq_A 116 -------AIPDFLSQIKTLVTLDFSYNALSG------------------------------------------------- 139 (313)
T ss_dssp -------ECCGGGGGCTTCCEEECCSSEEES-------------------------------------------------
T ss_pred -------cCCHHHhCCCCCCEEeCCCCccCC-------------------------------------------------
Confidence 133345555555555555554421
Q ss_pred eeccCCCCCCCCcccccCCCccEEeCCCCccc-cCCccccCCC-CCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 201 LSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQ-ELPPELSSCA-SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 201 l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~~~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
.+|..+..+++|++|++++|.++ .+|..+..++ +|+.|++++|.+....+..+..+. |+.|++++|.+
T Consensus 140 ---------~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 140 ---------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ---------CCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred ---------cCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 11223334455555555555555 3555555554 566666666655543333344443 55555555555
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc-cCCcccccCCCCcEEECCCCCCc-ccCccC
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR-EAPTDILRLQQLRILDLSQNSLQ-SIPEGF 356 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~-~l~~~~~~~~~L~~l~l~~n~l~-~l~~~~ 356 (422)
....+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.++ .+|..+..+++|+.|++++|.++ .+|..
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~- 287 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG- 287 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-
Confidence 544444455555555555555544433222 334445555555555544 44444445555555555555554 33332
Q ss_pred cCCCCCCEEeCCCCC
Q 014560 357 KNLTSLTELDLSDNN 371 (422)
Q Consensus 357 ~~~~~L~~L~l~~n~ 371 (422)
.++++|+.+++++|.
T Consensus 288 ~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 288 GNLQRFDVSAYANNK 302 (313)
T ss_dssp TTGGGSCGGGTCSSS
T ss_pred ccccccChHHhcCCC
Confidence 444555555555553
No 55
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.94 E-value=1.1e-26 Score=207.63 Aligned_cols=242 Identities=22% Similarity=0.281 Sum_probs=179.2
Q ss_pred ccccceeccccccc---CCchhhhccccCCeEeccC-Cccc-cCCCCCccCCCCCEEEcCCCcCc-cCchhhhCCCCCcE
Q 014560 23 TMLTELIASKNLLN---GMPETIGSLSRLIRLDLHQ-NRIL-SIPSSISGCCSLAEFYMGNNALS-ALPAELGKLSKLGT 96 (422)
Q Consensus 23 ~~L~~L~l~~~~i~---~~~~~~~~~~~L~~L~l~~-~~~~-~l~~~~~~~~~L~~L~l~~~~i~-~l~~~l~~~~~L~~ 96 (422)
.+++.|+++++.+. .+|..+.++++|++|++++ |.+. .+|..+.++++|++|++++|.++ .+|..+.++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 46788888888886 4677788888888888884 6666 56777888888888888888887 67777888888888
Q ss_pred EEccCCccc-ccccccccce-ecEEEcCCCCCC-CCCccccccC-CccEEEcCCCccccccccccCCCChHHHHHHHccC
Q 014560 97 LDLHSNQLK-EYCVEACQLR-LSVLDLSNNSLS-GLPPEIGKMT-TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 172 (422)
Q Consensus 97 L~l~~~~~~-~l~~~~~~~~-L~~L~l~~~~~~-~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (422)
|++++|.+. .++..+.... |++|++++|.++ .+|..+..++ +|++|++++|.++..
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-------------------- 189 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGK-------------------- 189 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEE--------------------
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeecc--------------------
Confidence 888888877 4555555544 888888888887 4777888887 899999988876422
Q ss_pred CCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCcccc-CCccccCCCCCcEEEecC
Q 014560 173 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLILSR 251 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~ 251 (422)
+|..+..++ |++|++++|.+.. .+..+..+++|+.|++++
T Consensus 190 --------------------------------------~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~ 230 (313)
T 1ogq_A 190 --------------------------------------IPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230 (313)
T ss_dssp --------------------------------------CCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCS
T ss_pred --------------------------------------CChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCC
Confidence 122233333 7778888877765 445577788888888888
Q ss_pred CcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCc
Q 014560 252 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQ 325 (422)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 325 (422)
|.+....+. +..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+.. ..+++|+.+++.+|.
T Consensus 231 N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 231 NSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp SEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred CceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 877655444 566788888888888887555555777888888888888887665554 677888888888875
No 56
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=4.7e-26 Score=204.58 Aligned_cols=224 Identities=21% Similarity=0.263 Sum_probs=182.3
Q ss_pred cccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccC
Q 014560 22 WTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHS 101 (422)
Q Consensus 22 ~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~ 101 (422)
...+++|+++++.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+..+++|++|++++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~ 159 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRA 159 (328)
T ss_dssp STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEE
T ss_pred ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCC
Confidence 47899999999999999988888999999999999999999999999999999999999999999999999999999998
Q ss_pred Ccc-cccccccc----------cceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHc
Q 014560 102 NQL-KEYCVEAC----------QLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRS 170 (422)
Q Consensus 102 ~~~-~~l~~~~~----------~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 170 (422)
|.+ ..++.... ...|+.|++++|.++.+|..+..+++|++|++++|.++.+
T Consensus 160 n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l------------------ 221 (328)
T 4fcg_A 160 CPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSAL------------------ 221 (328)
T ss_dssp ETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCC------------------
T ss_pred CCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcC------------------
Confidence 654 45665544 2349999999999999999999999999999998876432
Q ss_pred cCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCcccc-CCccccCCCCCcEEEe
Q 014560 171 RLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQE-LPPELSSCASLQTLIL 249 (422)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l 249 (422)
+..+..+++|++|++++|.+.. +|..+..+++|+.|++
T Consensus 222 -----------------------------------------~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L 260 (328)
T 4fcg_A 222 -----------------------------------------GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLIL 260 (328)
T ss_dssp -----------------------------------------CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEEC
T ss_pred -----------------------------------------chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEEC
Confidence 3345556788888888876654 6777888888888888
Q ss_pred cCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCC
Q 014560 250 SRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASL 304 (422)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 304 (422)
++|.+....+..+..+++|+.|++++|.+....+..+..+++++.+.+..+.+..
T Consensus 261 ~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 261 KDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 8876665444446788888888888877766555668888888888887765543
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.94 E-value=6.5e-25 Score=205.84 Aligned_cols=196 Identities=26% Similarity=0.349 Sum_probs=152.8
Q ss_pred ccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC-CCCCcCCCCCCCCCCCcc
Q 014560 216 WEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN-NPLRQVPSDGFKDIPMLQ 293 (422)
Q Consensus 216 ~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~ 293 (422)
..+++|++|++++|.++.++. .|..+++|++|++++|.+..++...|..+++|+.|++++ +.+..++...|..+++|+
T Consensus 109 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~ 188 (440)
T 3zyj_A 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLR 188 (440)
T ss_dssp TTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCC
T ss_pred cCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccC
Confidence 345678888888888777665 377788888888888888877777778888888888887 456667776788888888
Q ss_pred EEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCC
Q 014560 294 ILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNN 371 (422)
Q Consensus 294 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~ 371 (422)
.|++++|.++... .+..+++|+.|++++|.++.+ +..+.++++|+.|++++|.++.+ +..|..+++|+.|++++|+
T Consensus 189 ~L~L~~n~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 266 (440)
T 3zyj_A 189 YLNLAMCNLREIP--NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNN 266 (440)
T ss_dssp EEECTTSCCSSCC--CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSC
T ss_pred eecCCCCcCcccc--ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCC
Confidence 8888888887653 477788899999999988865 55678889999999999999876 5568889999999999999
Q ss_pred CcccCCccccCCccccEEEccCCCCCccchHHHhhhHHHHHHHHHhhC
Q 014560 372 ISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRGTKAVLKYLKDKI 419 (422)
Q Consensus 372 l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~~~~~~~~~~~~~~ 419 (422)
++.++...+..+++|+.|++++|++.. +.....+..|+++..
T Consensus 267 l~~~~~~~~~~l~~L~~L~L~~Np~~C------dC~l~~l~~~~~~~~ 308 (440)
T 3zyj_A 267 LTLLPHDLFTPLHHLERIHLHHNPWNC------NCDILWLSWWIKDMA 308 (440)
T ss_dssp CCCCCTTTTSSCTTCCEEECCSSCEEC------SSTTHHHHHHHHTTS
T ss_pred CCccChhHhccccCCCEEEcCCCCccC------CCCchHHHHHHHhcc
Confidence 998888776666899999999998763 333444555665543
No 58
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=1.6e-25 Score=201.14 Aligned_cols=227 Identities=17% Similarity=0.199 Sum_probs=192.4
Q ss_pred ccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcC
Q 014560 44 SLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLS 122 (422)
Q Consensus 44 ~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~ 122 (422)
...++++|++++|.+..+|..+..+++|++|++++|.++.+|..+..+++|++|++++|.++.+|..+.... |+.|+++
T Consensus 79 ~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 79 TQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR 158 (328)
T ss_dssp TSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEE
T ss_pred cccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECC
Confidence 347899999999999999999999999999999999999999999999999999999999998888777766 9999999
Q ss_pred CCCCCC-CCccccc---------cCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhh
Q 014560 123 NNSLSG-LPPEIGK---------MTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMAT 192 (422)
Q Consensus 123 ~~~~~~-~~~~~~~---------l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (422)
+|.+.+ +|..+.. +++|++|++++|.+
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l------------------------------------------- 195 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGI------------------------------------------- 195 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECC-------------------------------------------
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCc-------------------------------------------
Confidence 976554 6666544 77777777766654
Q ss_pred ccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEE
Q 014560 193 RLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLK 272 (422)
Q Consensus 193 ~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~ 272 (422)
..+|..+..+++|++|++++|.+..+|+.+..+++|++|++++|.+....+..+..+++|+.|+
T Consensus 196 ----------------~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~ 259 (328)
T 4fcg_A 196 ----------------RSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259 (328)
T ss_dssp ----------------CCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred ----------------CcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence 3445566778899999999999999988899999999999999887776556678899999999
Q ss_pred CCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC
Q 014560 273 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA 329 (422)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l 329 (422)
+++|.+....+..+..+++|+.|++++|.+.+..+..+..+++++.+.+..+.+..+
T Consensus 260 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~l 316 (328)
T 4fcg_A 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQL 316 (328)
T ss_dssp CTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSCC-
T ss_pred CCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHHHH
Confidence 999877766666688999999999999999988888999999999999887766544
No 59
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.93 E-value=1.2e-24 Score=204.84 Aligned_cols=241 Identities=24% Similarity=0.319 Sum_probs=149.0
Q ss_pred ccceecccccccCCchhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCccC-chhhhCCCCCcEEEccCC
Q 014560 25 LTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSN 102 (422)
Q Consensus 25 L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~ 102 (422)
.+.++.++..++.+|..+. ++|++|++++|.++.+ +..|.++++|++|++++|.++.+ +..|..+++|++|++++|
T Consensus 56 ~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n 133 (452)
T 3zyi_A 56 FSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDN 133 (452)
T ss_dssp SCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCC
Confidence 4566667777777765443 4777777777777755 55677777777777777777755 356777777777777777
Q ss_pred ccccccccccc-c-eecEEEcCCCCCCCCCc-cccccCCccEEEcCCC-ccccccccccCCCChHHHHHHHccCCCCccc
Q 014560 103 QLKEYCVEACQ-L-RLSVLDLSNNSLSGLPP-EIGKMTTLRKLLLTGN-PLRTLRSSLVNGPTPALLKYLRSRLPENEDS 178 (422)
Q Consensus 103 ~~~~l~~~~~~-~-~L~~L~l~~~~~~~~~~-~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 178 (422)
.++.++...+. . +|+.|++++|.+..++. .+..+++|+.|++++| .+..++..
T Consensus 134 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~----------------------- 190 (452)
T 3zyi_A 134 WLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG----------------------- 190 (452)
T ss_dssp CCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-----------------------
T ss_pred cCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-----------------------
Confidence 77766655322 2 27777777777666433 4667777777777764 33222111
Q ss_pred cccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC
Q 014560 179 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258 (422)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (422)
.+..+++|++|++++|.++.+| .+..+++|+.|++++|.+..+.
T Consensus 191 -----------------------------------~~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~ 234 (452)
T 3zyi_A 191 -----------------------------------AFEGLFNLKYLNLGMCNIKDMP-NLTPLVGLEELEMSGNHFPEIR 234 (452)
T ss_dssp -----------------------------------TTTTCTTCCEEECTTSCCSSCC-CCTTCTTCCEEECTTSCCSEEC
T ss_pred -----------------------------------hccCCCCCCEEECCCCcccccc-cccccccccEEECcCCcCcccC
Confidence 1223455666666666655554 3555566666666666666655
Q ss_pred hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcC
Q 014560 259 DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 326 (422)
Q Consensus 259 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 326 (422)
+..|..+++|+.|++++|.+..+.+..|..+++|+.|++++|.++......+..+++|+.|++++|.+
T Consensus 235 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPW 302 (452)
T ss_dssp GGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCE
T ss_pred cccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCc
Confidence 55556666666666666666655555556666666666666666655555555566666666666543
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.93 E-value=3.8e-24 Score=188.85 Aligned_cols=203 Identities=30% Similarity=0.399 Sum_probs=182.0
Q ss_pred cccceeeccCCCCCCCCc-ccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCCc-CCCCChHHHhcCCCCCEEE
Q 014560 196 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLK 272 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~ 272 (422)
..++.++++++.+..++. .+..+++|++|++++|.++.+ +..+..+++|++|++++|. +..+++..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 478999999999997775 466789999999999999886 5668999999999999997 8888777789999999999
Q ss_pred CCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcc
Q 014560 273 LDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQS 351 (422)
Q Consensus 273 l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~ 351 (422)
+++|.+..+++..+..+++|+.|++++|.+.......+..+++|++|++++|.++.++.. +.++++|+.|++++|.++.
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 999999999888899999999999999999988888899999999999999999987764 7889999999999999997
Q ss_pred c-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCc
Q 014560 352 I-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 352 l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
+ |..+..+++|+.|++++|.++.++...+..+++|++|++++|++..
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 6 7789999999999999999998887644445999999999999864
No 61
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=3.2e-26 Score=205.03 Aligned_cols=255 Identities=21% Similarity=0.183 Sum_probs=182.8
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNAL 81 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i 81 (422)
..+++++.+..+....+..+++|++|++++|.++.++ ..+..+++|++|++++|.++..++ +..+++|++|++++|.+
T Consensus 14 i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l 92 (317)
T 3o53_A 14 IEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYV 92 (317)
T ss_dssp EESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEE
T ss_pred EeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCcc
Confidence 4566666777777777778888999999999887774 678888899999999988876644 78888899999988888
Q ss_pred ccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCC-ccccccCCccEEEcCCCccccccccccCCC
Q 014560 82 SALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNGP 160 (422)
Q Consensus 82 ~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~ 160 (422)
+.++. .++|++|++++|.++.++.... ..|+.|++++|.++.++ ..+..+++|++|++++|.++.+..
T Consensus 93 ~~l~~----~~~L~~L~l~~n~l~~~~~~~~-~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~------ 161 (317)
T 3o53_A 93 QELLV----GPSIETLHAANNNISRVSCSRG-QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNF------ 161 (317)
T ss_dssp EEEEE----CTTCCEEECCSSCCSEEEECCC-SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEG------
T ss_pred ccccC----CCCcCEEECCCCccCCcCcccc-CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccH------
Confidence 87653 3788888888888887665442 34888888888887743 356777888888888877654321
Q ss_pred ChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCccc-ccCCCccEEeCCCCccccCCcccc
Q 014560 161 TPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEI-WEAGEITKLDLSRNSIQELPPELS 239 (422)
Q Consensus 161 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~-~~~~~L~~L~l~~~~l~~~~~~~~ 239 (422)
..+ ..+++|++|++++|.++.++. ..
T Consensus 162 ----------------------------------------------------~~~~~~l~~L~~L~L~~N~l~~~~~-~~ 188 (317)
T 3o53_A 162 ----------------------------------------------------AELAASSDTLEHLNLQYNFIYDVKG-QV 188 (317)
T ss_dssp ----------------------------------------------------GGGGGGTTTCCEEECTTSCCCEEEC-CC
T ss_pred ----------------------------------------------------HHHhhccCcCCEEECCCCcCccccc-cc
Confidence 111 235678888888888777643 33
Q ss_pred CCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCC-CCCCCCCCCCccCce
Q 014560 240 SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS-LPENPPFSSLPHLQE 318 (422)
Q Consensus 240 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~ 318 (422)
.+++|++|++++|.+..+++. +..+++|+.|++++|.+..++.. +..+++|+.+++++|.+. +..+..+..+++|+.
T Consensus 189 ~l~~L~~L~Ls~N~l~~l~~~-~~~l~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~ 266 (317)
T 3o53_A 189 VFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266 (317)
T ss_dssp CCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHH
T ss_pred ccccCCEEECCCCcCCcchhh-hcccCcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceE
Confidence 477888888888888777665 56778888888888887776554 666777777777777665 333334455566666
Q ss_pred EEeCCC
Q 014560 319 LYLRRM 324 (422)
Q Consensus 319 L~l~~~ 324 (422)
+++.++
T Consensus 267 l~l~~~ 272 (317)
T 3o53_A 267 VAKQTV 272 (317)
T ss_dssp HHHHHH
T ss_pred EECCCc
Confidence 665543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.93 E-value=4.8e-24 Score=199.92 Aligned_cols=109 Identities=21% Similarity=0.322 Sum_probs=65.7
Q ss_pred cCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEE
Q 014560 217 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 296 (422)
Q Consensus 217 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 296 (422)
.+++|++|++++|.++.+| .+..+++|+.|++++|.+..+.+..|..+++|+.|++++|.+..+++..|..+++|+.|+
T Consensus 183 ~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 261 (440)
T 3zyj_A 183 GLSNLRYLNLAMCNLREIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEIN 261 (440)
T ss_dssp TCSSCCEEECTTSCCSSCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEE
T ss_pred cccccCeecCCCCcCcccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEE
Confidence 3456666666666665554 255556666666666666655555556666666666666666665555566666666666
Q ss_pred ccCCcCCCCCCCCCCCCccCceEEeCCCcC
Q 014560 297 LSYNIASLPENPPFSSLPHLQELYLRRMQL 326 (422)
Q Consensus 297 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 326 (422)
+++|.++......+..+++|+.|++++|.+
T Consensus 262 L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 262 LAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp CTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred CCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence 666666655555555666666666666543
No 63
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.92 E-value=4.9e-27 Score=229.18 Aligned_cols=374 Identities=13% Similarity=0.111 Sum_probs=206.0
Q ss_pred hhcccccceecccccccCC-chhhhc-ccc-CCeEeccCCc-cc--cCCCCCccCCCCCEEEcCCCcCcc-----Cchhh
Q 014560 20 ASWTMLTELIASKNLLNGM-PETIGS-LSR-LIRLDLHQNR-IL--SIPSSISGCCSLAEFYMGNNALSA-----LPAEL 88 (422)
Q Consensus 20 ~~~~~L~~L~l~~~~i~~~-~~~~~~-~~~-L~~L~l~~~~-~~--~l~~~~~~~~~L~~L~l~~~~i~~-----l~~~l 88 (422)
.++++|++|++++|.++.. +..+.. +++ |++|++++|. +. .++....++++|++|++++|.++. ++..+
T Consensus 109 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 109 NNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 3677788888887766432 333433 334 8888887775 22 222223467778888887776642 33345
Q ss_pred hCCCCCcEEEccCCccc-----ccccccccc-eecEEEcCCCCCCCCCccccccCCccEEEcCCCccc-cccccccCCCC
Q 014560 89 GKLSKLGTLDLHSNQLK-----EYCVEACQL-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLR-TLRSSLVNGPT 161 (422)
Q Consensus 89 ~~~~~L~~L~l~~~~~~-----~l~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~~~ 161 (422)
..+++|++|++++|.+. .++...... .|+.|++++|.+..++..+..+++|++++++.+... ...........
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 268 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF 268 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence 56777778877777765 222222222 377777777777666666777777777777642211 00000000000
Q ss_pred hHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCC--CCcccccCCCccEEeCCCCcccc--CCcc
Q 014560 162 PALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSA--IPSEIWEAGEITKLDLSRNSIQE--LPPE 237 (422)
Q Consensus 162 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~--~~~~~~~~~~L~~L~l~~~~l~~--~~~~ 237 (422)
. ..+..-..................+++.+++.++.+.. +...+..+++|++|++++ .+.. ++..
T Consensus 269 ~----------~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~-~~~~~~l~~~ 337 (592)
T 3ogk_B 269 P----------RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRN-VIGDRGLEVL 337 (592)
T ss_dssp C----------TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEG-GGHHHHHHHH
T ss_pred c----------ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccC-ccCHHHHHHH
Confidence 0 00000000000011111222233567777777766431 112234567777777763 3322 3323
Q ss_pred ccCCCCCcEEEecC----------C-cCCCCCh-HHHhcCCCCCEEECCCCCCCcCCCCCCC-CCCCccEEEcc----CC
Q 014560 238 LSSCASLQTLILSR----------N-KIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLS----YN 300 (422)
Q Consensus 238 ~~~~~~L~~L~l~~----------~-~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~----~~ 300 (422)
+..+++|++|++++ + .++.... .....+++|+.|+++.+.++......+. .+++|+.|+++ .+
T Consensus 338 ~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n 417 (592)
T 3ogk_B 338 AQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREE 417 (592)
T ss_dssp HHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCS
T ss_pred HHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCc
Confidence 35567788888773 2 3333211 1234577888888766665543222233 26778888885 33
Q ss_pred cCCCCC-----CCCCCCCccCceEEeCCCc--Cc-cCCccc-ccCCCCcEEECCCCCCcc--cCccCcCCCCCCEEeCCC
Q 014560 301 IASLPE-----NPPFSSLPHLQELYLRRMQ--LR-EAPTDI-LRLQQLRILDLSQNSLQS--IPEGFKNLTSLTELDLSD 369 (422)
Q Consensus 301 ~~~~~~-----~~~~~~~~~L~~L~l~~~~--i~-~l~~~~-~~~~~L~~l~l~~n~l~~--l~~~~~~~~~L~~L~l~~ 369 (422)
.+++.. ...+..+++|+.|++++|. ++ .....+ ..+++|+.|++++|.++. ++..+..+++|+.|++++
T Consensus 418 ~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~ 497 (592)
T 3ogk_B 418 RITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRG 497 (592)
T ss_dssp CCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEES
T ss_pred cccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccC
Confidence 444321 1114457788888886542 43 122222 347888888888888873 455567788888888888
Q ss_pred CCCcc--cCCccccCCccccEEEccCCCCCccchHHHh
Q 014560 370 NNISA--LPPELGLLEPSLQALRLDGNPLRSIRRTILD 405 (422)
Q Consensus 370 n~l~~--~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~ 405 (422)
|.++. ++.....+ ++|++|++++|+++......++
T Consensus 498 n~l~~~~~~~~~~~l-~~L~~L~ls~n~it~~~~~~l~ 534 (592)
T 3ogk_B 498 CCFSERAIAAAVTKL-PSLRYLWVQGYRASMTGQDLMQ 534 (592)
T ss_dssp CCCBHHHHHHHHHHC-SSCCEEEEESCBCCTTCTTGGG
T ss_pred CCCcHHHHHHHHHhc-CccCeeECcCCcCCHHHHHHHH
Confidence 88762 23223334 8888888888887765544443
No 64
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=4.5e-23 Score=180.27 Aligned_cols=201 Identities=30% Similarity=0.425 Sum_probs=182.1
Q ss_pred ccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 197 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 197 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
..+.++++++.+..+|..+. +++++|+++++.++.+++ .|..+++|++|++++|.+..++...|..+++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 46789999999999887654 689999999999998776 589999999999999999999988888999999999999
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCc
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 354 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~ 354 (422)
|.+..+++..|..+++|+.|++++|.+....+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 174 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE 174 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence 999999988889999999999999999998888899999999999999999988766 6789999999999999998865
Q ss_pred -cCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCcc
Q 014560 355 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 355 -~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
.|..+++|+.|++++|.++.++...+..+++|+.|++++|++..-
T Consensus 175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 220 (270)
T 2o6q_A 175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT 220 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence 488999999999999999999887666559999999999998654
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.91 E-value=2.1e-24 Score=193.19 Aligned_cols=171 Identities=23% Similarity=0.267 Sum_probs=94.5
Q ss_pred CCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEc
Q 014560 218 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 297 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 297 (422)
+++|++|++++|.++.++. .++|+.|++++|.+...+. ..+++|+.|++++|.+..+++..+..+++|+.|++
T Consensus 79 l~~L~~L~Ls~n~l~~l~~----~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~L 151 (317)
T 3o53_A 79 LSTLRTLDLNNNYVQELLV----GPSIETLHAANNNISRVSC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDL 151 (317)
T ss_dssp CTTCCEEECCSSEEEEEEE----CTTCCEEECCSSCCSEEEE---CCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEEC
T ss_pred cCCCCEEECcCCccccccC----CCCcCEEECCCCccCCcCc---cccCCCCEEECCCCCCCCccchhhhccCCCCEEEC
Confidence 3445555555555443331 2455555555555544432 22345555555555555554444555555555555
Q ss_pred cCCcCCCCCCCCC-CCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccC
Q 014560 298 SYNIASLPENPPF-SSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALP 376 (422)
Q Consensus 298 ~~~~~~~~~~~~~-~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~ 376 (422)
++|.+.+..+..+ ..+++|++|++++|.++.++.. ..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|
T Consensus 152 s~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~~l~ 230 (317)
T 3o53_A 152 KLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIE 230 (317)
T ss_dssp TTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEEC
T ss_pred CCCCCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcccCcccEEECcCCcccchh
Confidence 5555554433333 2455666666666666655332 2356666666666666666555666666666666666666666
Q ss_pred CccccCCccccEEEccCCCCC
Q 014560 377 PELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 377 ~~~~~~~~~L~~l~l~~n~~~ 397 (422)
..+..+ ++|+.|++++|++.
T Consensus 231 ~~~~~l-~~L~~L~l~~N~~~ 250 (317)
T 3o53_A 231 KALRFS-QNLEHFDLRGNGFH 250 (317)
T ss_dssp TTCCCC-TTCCEEECTTCCCB
T ss_pred hHhhcC-CCCCEEEccCCCcc
Confidence 655544 66666666666665
No 66
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=1.6e-24 Score=193.49 Aligned_cols=246 Identities=22% Similarity=0.249 Sum_probs=158.9
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCCccc--cCCCCCc-------cCCCCCEEEcCCCcCc-cCchhh
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRIL--SIPSSIS-------GCCSLAEFYMGNNALS-ALPAEL 88 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~--~l~~~~~-------~~~~L~~L~l~~~~i~-~l~~~l 88 (422)
+.+.++|++|++++|.+ .+|..+... |++|++++|.+. .+|..+. ++++|++|++++|.++ .+|..+
T Consensus 39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred EccCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 34556677777777666 666555443 666666666664 2343333 4667777777777666 455554
Q ss_pred --hCCCCCcEEEccCCccccccccccc------ceecEEEcCCCCCCCCC-ccccccCCccEEEcCCCccccccccccCC
Q 014560 89 --GKLSKLGTLDLHSNQLKEYCVEACQ------LRLSVLDLSNNSLSGLP-PEIGKMTTLRKLLLTGNPLRTLRSSLVNG 159 (422)
Q Consensus 89 --~~~~~L~~L~l~~~~~~~l~~~~~~------~~L~~L~l~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~ 159 (422)
..+++|++|++++|.++.++..+.. .+|++|++++|.+..++ ..+..+++|++|++++|.+.....
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~----- 190 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERG----- 190 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHH-----
T ss_pred HHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchH-----
Confidence 6667777777777776655433332 23777777777777754 668888889999998887532100
Q ss_pred CChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcc--cccCCCccEEeCCCCccccC---
Q 014560 160 PTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSE--IWEAGEITKLDLSRNSIQEL--- 234 (422)
Q Consensus 160 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~--~~~~~~L~~L~l~~~~l~~~--- 234 (422)
++.. +..+++|++|++++|.++.+
T Consensus 191 ---------------------------------------------------~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 219 (312)
T 1wwl_A 191 ---------------------------------------------------LISALCPLKFPTLQVLALRNAGMETPSGV 219 (312)
T ss_dssp ---------------------------------------------------HHHHSCTTSCTTCCEEECTTSCCCCHHHH
T ss_pred ---------------------------------------------------HHHHHHhccCCCCCEEECCCCcCcchHHH
Confidence 0001 13356777777877777643
Q ss_pred Ccc-ccCCCCCcEEEecCCcCCCCCh-HHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCC
Q 014560 235 PPE-LSSCASLQTLILSRNKIKDWPD-AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSS 312 (422)
Q Consensus 235 ~~~-~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~ 312 (422)
+.. +..+++|+.|++++|.+.+..+ ..+..+++|+.|++++|.++.++.. +. ++|+.|++++|.+++. +. +..
T Consensus 220 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~--~~L~~L~Ls~N~l~~~-p~-~~~ 294 (312)
T 1wwl_A 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKG-LP--AKLSVLDLSYNRLDRN-PS-PDE 294 (312)
T ss_dssp HHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSS-CC--SEEEEEECCSSCCCSC-CC-TTT
T ss_pred HHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhh-cc--CCceEEECCCCCCCCC-hh-Hhh
Confidence 222 3466788888888887776442 3345567888888888888776654 32 7788888888888776 22 777
Q ss_pred CccCceEEeCCCcCcc
Q 014560 313 LPHLQELYLRRMQLRE 328 (422)
Q Consensus 313 ~~~L~~L~l~~~~i~~ 328 (422)
+++|++|++++|.++.
T Consensus 295 l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SCEEEEEECTTCTTTC
T ss_pred CCCCCEEeccCCCCCC
Confidence 8888888888887764
No 67
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.91 E-value=6.5e-26 Score=202.61 Aligned_cols=178 Identities=26% Similarity=0.318 Sum_probs=105.8
Q ss_pred CCCccEEeCCCCccccCCccccCC-----CCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcC---C-CCCCCC
Q 014560 218 AGEITKLDLSRNSIQELPPELSSC-----ASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQV---P-SDGFKD 288 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~-~~~~~~ 288 (422)
+++|++|++++|.++.+|..+..+ ++|++|++++|.+...++..+..+++|+.|++++|.+... + ...+..
T Consensus 120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 199 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK 199 (312)
T ss_dssp SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence 445555555555554444333333 5555556655555555554455555666666665554321 1 111245
Q ss_pred CCCccEEEccCCcCCCCC---CCCCCCCccCceEEeCCCcCccCC--cccccCCCCcEEECCCCCCcccCccCcCCCCCC
Q 014560 289 IPMLQILDLSYNIASLPE---NPPFSSLPHLQELYLRRMQLREAP--TDILRLQQLRILDLSQNSLQSIPEGFKNLTSLT 363 (422)
Q Consensus 289 ~~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~L~l~~~~i~~l~--~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~ 363 (422)
+++|+.|++++|.+++.. ...+..+++|+.|++++|.++..+ ..+..+++|+.|++++|.++.+|..+. ++|+
T Consensus 200 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~ 277 (312)
T 1wwl_A 200 FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--AKLS 277 (312)
T ss_dssp CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--SEEE
T ss_pred CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--CCce
Confidence 566666666666655221 112234567777777777766543 234456778888888888777777665 6788
Q ss_pred EEeCCCCCCcccCCccccCCccccEEEccCCCCCcc
Q 014560 364 ELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 364 ~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
.|++++|+|+.+|. +..+ ++|++|++++|+++.+
T Consensus 278 ~L~Ls~N~l~~~p~-~~~l-~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 278 VLDLSYNRLDRNPS-PDEL-PQVGNLSLKGNPFLDS 311 (312)
T ss_dssp EEECCSSCCCSCCC-TTTS-CEEEEEECTTCTTTCC
T ss_pred EEECCCCCCCCChh-HhhC-CCCCEEeccCCCCCCC
Confidence 88888888877765 5555 7888888888877653
No 68
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.91 E-value=1.4e-22 Score=178.73 Aligned_cols=205 Identities=30% Similarity=0.379 Sum_probs=182.3
Q ss_pred ceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCC
Q 014560 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 277 (422)
Q Consensus 199 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (422)
+.+++++..+..+|..+ .+++++|+++++.++.+++ .|..+++|++|++++|.+..+.+..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 57888888888888754 4689999999999998764 58899999999999999999877788999999999999997
Q ss_pred -CCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCc-
Q 014560 278 -LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE- 354 (422)
Q Consensus 278 -~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~- 354 (422)
+..+++..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 171 (285)
T 1ozn_A 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171 (285)
T ss_dssp TCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred CccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH
Confidence 8888888899999999999999999998888899999999999999999987765 7789999999999999998876
Q ss_pred cCcCCCCCCEEeCCCCCCccc-CCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 355 GFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 355 ~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
.+..+++|+.|++++|.++.+ +..+..+ ++|+.|++++|.++.++...+..
T Consensus 172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~ 223 (285)
T 1ozn_A 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDL-GRLMTLYLFANNLSALPTEALAP 223 (285)
T ss_dssp TTTTCTTCCEEECCSSCCCEECTTTTTTC-TTCCEEECCSSCCSCCCHHHHTT
T ss_pred HhcCccccCEEECCCCcccccCHhHccCc-ccccEeeCCCCcCCcCCHHHccc
Confidence 489999999999999999977 4455555 99999999999999999887764
No 69
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.90 E-value=2.6e-25 Score=217.02 Aligned_cols=383 Identities=11% Similarity=0.039 Sum_probs=231.5
Q ss_pred CceeeccCCcceecChhHHhh-ccc-ccceeccccc-cc--CCchhhhccccCCeEeccCCccccC-----CCCCccCCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIAS-WTM-LTELIASKNL-LN--GMPETIGSLSRLIRLDLHQNRILSI-----PSSISGCCS 70 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~-~~~-L~~L~l~~~~-i~--~~~~~~~~~~~L~~L~l~~~~~~~l-----~~~~~~~~~ 70 (422)
|++|+|++|.++......+.. ++. |++|++++|. +. .++.....+++|++|++++|.+... +..+..+++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 678888888877554444555 344 8888888776 22 2233345788888888888876532 223466788
Q ss_pred CCEEEcCCCcCc-----cCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCC----CCCccccccCCcc
Q 014560 71 LAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLS----GLPPEIGKMTTLR 140 (422)
Q Consensus 71 L~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~----~~~~~~~~l~~L~ 140 (422)
|++|+++++.++ .++..+.++++|++|++++|.+..++....... |+.|+++..... .....+..+++|+
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~ 273 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLC 273 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCC
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcccccc
Confidence 888888888775 344456678888888888887776665544444 777777642211 1223344445555
Q ss_pred EEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCC-CCCcccccCC
Q 014560 141 KLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLS-AIPSEIWEAG 219 (422)
Q Consensus 141 ~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~-~~~~~~~~~~ 219 (422)
.+++.++....++... ... ..+..+...+.. ..............+++.+++.++... .++.....++
T Consensus 274 ~L~l~~~~~~~l~~~~---------~~~-~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~ 342 (592)
T 3ogk_B 274 RLGLSYMGPNEMPILF---------PFA-AQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCK 342 (592)
T ss_dssp EEEETTCCTTTGGGGG---------GGG-GGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred ccCccccchhHHHHHH---------hhc-CCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCC
Confidence 5555443221111100 000 001111111111 111112222334567888888733222 2223334578
Q ss_pred CccEEeCCC-----------Ccccc--CCccccCCCCCcEEEecCCcCCCCChHHHhc-CCCCCEEECC----CCCCCcC
Q 014560 220 EITKLDLSR-----------NSIQE--LPPELSSCASLQTLILSRNKIKDWPDAILTS-LSSLSCLKLD----NNPLRQV 281 (422)
Q Consensus 220 ~L~~L~l~~-----------~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~----~~~~~~~ 281 (422)
+|++|++++ +.++. ++.....+++|++|++..+.+++.....+.. +++|+.|+++ .+.++..
T Consensus 343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~ 422 (592)
T 3ogk_B 343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL 422 (592)
T ss_dssp TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence 899999994 34443 2222456899999999877777654444444 8999999996 4455443
Q ss_pred CCC-----CCCCCCCccEEEccCCc--CCCCCCCCC-CCCccCceEEeCCCcCcc--CCcccccCCCCcEEECCCCCCcc
Q 014560 282 PSD-----GFKDIPMLQILDLSYNI--ASLPENPPF-SSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQS 351 (422)
Q Consensus 282 ~~~-----~~~~~~~L~~l~l~~~~--~~~~~~~~~-~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~l~l~~n~l~~ 351 (422)
+.. .+..+++|+.|+++.|. +++.....+ ..+++|+.|++++|.++. ++..+.++++|+.|++++|.++.
T Consensus 423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence 211 13458899999996542 332221112 347889999999998873 44456788999999999999873
Q ss_pred --cCccCcCCCCCCEEeCCCCCCccc-CCccccCCccccEEEccCC
Q 014560 352 --IPEGFKNLTSLTELDLSDNNISAL-PPELGLLEPSLQALRLDGN 394 (422)
Q Consensus 352 --l~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~~~~L~~l~l~~n 394 (422)
++..+..+++|+.|++++|+++.. ...+...+|.+....+..+
T Consensus 503 ~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 503 RAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 455567789999999999998743 3334444477766666554
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=3.8e-24 Score=202.43 Aligned_cols=234 Identities=25% Similarity=0.246 Sum_probs=145.7
Q ss_pred ccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccccccccccceecEEEcC
Q 014560 44 SLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLS 122 (422)
Q Consensus 44 ~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~ 122 (422)
.+++|++|++++|.+..+ |..|..+++|++|++++|.++..+. +..+++|++|++++|.++.++.. ..|+.|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~~---~~L~~L~L~ 107 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLVG---PSIETLHAA 107 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEEC---TTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCCC---CCcCEEECc
Confidence 344788888888888866 4577888888888888888875544 77888888888888877765432 224444444
Q ss_pred CCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceee
Q 014560 123 NNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELS 202 (422)
Q Consensus 123 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 202 (422)
+|.+..++. ..
T Consensus 108 ~N~l~~~~~--~~------------------------------------------------------------------- 118 (487)
T 3oja_A 108 NNNISRVSC--SR------------------------------------------------------------------- 118 (487)
T ss_dssp SSCCCCEEE--CC-------------------------------------------------------------------
T ss_pred CCcCCCCCc--cc-------------------------------------------------------------------
Confidence 444333211 11
Q ss_pred ccCCCCCCCCcccccCCCccEEeCCCCccccC-CccccCCCCCcEEEecCCcCCCCChHHHh-cCCCCCEEECCCCCCCc
Q 014560 203 LEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-PPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQ 280 (422)
Q Consensus 203 l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~ 280 (422)
+++|+.|++++|.++.+ |..+..+++|+.|++++|.+....+..+. .+++|+.|++++|.+..
T Consensus 119 ---------------l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 119 ---------------GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp ---------------CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred ---------------cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 23455555555555553 33455566666666666666664444343 56677777777776666
Q ss_pred CCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCc--ccCccCcC
Q 014560 281 VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ--SIPEGFKN 358 (422)
Q Consensus 281 ~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~--~l~~~~~~ 358 (422)
+++ ...+++|+.|++++|.+++..+. +..+++|+.|++++|.+..+|..+..+++|+.+++++|.+. .+|..+..
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGG-GGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHh-HcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 544 23466666666666666654333 55666666677766666666666666667777777777666 45555666
Q ss_pred CCCCCEEeCC
Q 014560 359 LTSLTELDLS 368 (422)
Q Consensus 359 ~~~L~~L~l~ 368 (422)
++.++.+++.
T Consensus 261 l~~L~~l~~~ 270 (487)
T 3oja_A 261 NQRVQTVAKQ 270 (487)
T ss_dssp CHHHHHHHHH
T ss_pred CCCCcEEecc
Confidence 6666666553
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=7.5e-24 Score=200.39 Aligned_cols=235 Identities=23% Similarity=0.259 Sum_probs=180.1
Q ss_pred cCCCCCEEEcCCCcCccC-chhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcC
Q 014560 67 GCCSLAEFYMGNNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLT 145 (422)
Q Consensus 67 ~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~ 145 (422)
.+++|++|++++|.++.+ |..|..+++|++|++++|.++..+ . +..+++|++|+++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~----------------------~-l~~l~~L~~L~Ls 88 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL----------------------D-LESLSTLRTLDLN 88 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE----------------------E-CTTCTTCCEEECC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc----------------------c-cccCCCCCEEEec
Confidence 344777777777777765 456777777777777777655322 1 5566788888888
Q ss_pred CCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEe
Q 014560 146 GNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLD 225 (422)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~ 225 (422)
+|.++.++ ..++|++|+
T Consensus 89 ~N~l~~l~---------------------------------------------------------------~~~~L~~L~ 105 (487)
T 3oja_A 89 NNYVQELL---------------------------------------------------------------VGPSIETLH 105 (487)
T ss_dssp SSEEEEEE---------------------------------------------------------------ECTTCCEEE
T ss_pred CCcCCCCC---------------------------------------------------------------CCCCcCEEE
Confidence 87764321 125788888
Q ss_pred CCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCC-CCCCccEEEccCCcCCC
Q 014560 226 LSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFK-DIPMLQILDLSYNIASL 304 (422)
Q Consensus 226 l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~l~l~~~~~~~ 304 (422)
+++|.+..++. ..+++|+.|++++|.+....+..+..+++|+.|++++|.+...++..+. .+++|+.|++++|.+++
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 99888887654 3467899999999999988777778889999999999998886665554 68899999999998887
Q ss_pred CCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCc--ccCCccccC
Q 014560 305 PENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNIS--ALPPELGLL 382 (422)
Q Consensus 305 ~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~--~~~~~~~~~ 382 (422)
... ...+++|+.|++++|.++.+|..+..+++|+.|++++|.++.+|..+..+++|+.|++++|.+. .+|..+..+
T Consensus 184 ~~~--~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 184 VKG--QVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp EEC--CCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCCEECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred ccc--cccCCCCCEEECCCCCCCCCCHhHcCCCCccEEEecCCcCcccchhhccCCCCCEEEcCCCCCcCcchHHHHHhC
Confidence 633 3457889999999999998888888889999999999999988888888899999999999887 554445444
Q ss_pred CccccEEEcc
Q 014560 383 EPSLQALRLD 392 (422)
Q Consensus 383 ~~~L~~l~l~ 392 (422)
+.++.+++.
T Consensus 262 -~~L~~l~~~ 270 (487)
T 3oja_A 262 -QRVQTVAKQ 270 (487)
T ss_dssp -HHHHHHHHH
T ss_pred -CCCcEEecc
Confidence 677776664
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=6.8e-22 Score=174.19 Aligned_cols=197 Identities=28% Similarity=0.405 Sum_probs=177.6
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCC-ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP-PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 274 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 274 (422)
..++.+++.++.+..+|..+. ++++.|++++|.++.++ ..|..+++|+.|++++|.+..++.. ..+++|+.|+++
T Consensus 10 ~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~~L~Ls 85 (290)
T 1p9a_G 10 ASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLGTLDLS 85 (290)
T ss_dssp TTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCCEEECC
T ss_pred CCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCCEEECC
Confidence 578899999999999987764 68999999999998864 4589999999999999999887653 678999999999
Q ss_pred CCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccC
Q 014560 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIP 353 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~ 353 (422)
+|.+..++.. +..+++|+.|++++|.++...+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|.++.+|
T Consensus 86 ~N~l~~l~~~-~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~ 164 (290)
T 1p9a_G 86 HNQLQSLPLL-GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164 (290)
T ss_dssp SSCCSSCCCC-TTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred CCcCCcCchh-hccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccC
Confidence 9999988764 78899999999999999998888899999999999999999988766 568899999999999999987
Q ss_pred cc-CcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCc
Q 014560 354 EG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 354 ~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
.. |..+++|+.|++++|+++.+|..++.. ++|+.+++.+|++..
T Consensus 165 ~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~-~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 165 AGLLNGLENLDTLLLQENSLYTIPKGFFGS-HLLPFAFLHGNPWLC 209 (290)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CCCSEEECCSCCBCC
T ss_pred HHHhcCcCCCCEEECCCCcCCccChhhccc-ccCCeEEeCCCCccC
Confidence 65 688999999999999999999999988 899999999999864
No 73
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=2.8e-22 Score=175.95 Aligned_cols=203 Identities=29% Similarity=0.319 Sum_probs=176.5
Q ss_pred cccceeeccCCCCCCCCc-ccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEEC
Q 014560 196 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKL 273 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 273 (422)
.+++.++++++.+..++. .+..+++|++|++++|.+..+++ .+..+++|++|++++|.+...++..+..+++|+.|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 478999999999987766 66778999999999999988665 5889999999999999999988878899999999999
Q ss_pred CCCCCCcCCCCCCCCCCCccEEEccCCcCCCCC-CCCCCCCccCceEEeCCCcCccCCc-ccccCCCCc----EEECCCC
Q 014560 274 DNNPLRQVPSDGFKDIPMLQILDLSYNIASLPE-NPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLR----ILDLSQN 347 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~----~l~l~~n 347 (422)
++|.+..+++..+..+++|+.|++++|.+.+.. +..+..+++|++|++++|.++.++. .+..+++|+ .+++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 999999988877999999999999999998754 6678899999999999999997653 455556666 8999999
Q ss_pred CCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCc
Q 014560 348 SLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 348 ~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~ 398 (422)
.++.++.......+|+.|++++|.++.++...+..+++|++|++++|++..
T Consensus 188 ~l~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 188 PMNFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp CCCEECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred cccccCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 999887766566699999999999999988876655999999999999874
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.89 E-value=4.4e-26 Score=222.55 Aligned_cols=386 Identities=13% Similarity=0.144 Sum_probs=237.5
Q ss_pred CceeeccCCc-ceecC--------------hhHHhhcccccceecccccccCC-chhhh-ccccCCeEeccCC-cccc--
Q 014560 1 MSKLDVEGNK-LTVLS--------------NNLIASWTMLTELIASKNLLNGM-PETIG-SLSRLIRLDLHQN-RILS-- 60 (422)
Q Consensus 1 L~~L~ls~~~-i~~i~--------------~~~~~~~~~L~~L~l~~~~i~~~-~~~~~-~~~~L~~L~l~~~-~~~~-- 60 (422)
|++|++++|. +..+. ......+++|++|+++++.++.. +..+. .+++|++|++++| .+..
T Consensus 68 L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~ 147 (594)
T 2p1m_B 68 VRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDG 147 (594)
T ss_dssp CCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHH
T ss_pred ceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHH
Confidence 5788998876 32221 23356788999999999988643 34443 6899999999998 4553
Q ss_pred CCCCCccCCCCCEEEcCCCcCcc-----CchhhhCCCCCcEEEccCCc--cc--cccccccc-ceecEEEcCCC-CCCCC
Q 014560 61 IPSSISGCCSLAEFYMGNNALSA-----LPAELGKLSKLGTLDLHSNQ--LK--EYCVEACQ-LRLSVLDLSNN-SLSGL 129 (422)
Q Consensus 61 l~~~~~~~~~L~~L~l~~~~i~~-----l~~~l~~~~~L~~L~l~~~~--~~--~l~~~~~~-~~L~~L~l~~~-~~~~~ 129 (422)
++..+.++++|++|++++|.++. ++.....+++|++|+++++. +. .+...... .+|+.|++++| .+..+
T Consensus 148 l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l 227 (594)
T 2p1m_B 148 LAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKL 227 (594)
T ss_dssp HHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHH
T ss_pred HHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHH
Confidence 44455689999999999998763 33333467899999999886 22 22222122 34999999988 33346
Q ss_pred CccccccCCccEEEcCCCccccccccccCCCChHHHHHHH---ccCCCCccc-cccchhhhHHHhhhccccccceeeccC
Q 014560 130 PPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLR---SRLPENEDS-EASTTKEDLITMATRLSVTSKELSLEG 205 (422)
Q Consensus 130 ~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~ 205 (422)
+..+..+++|++|++..+... + ....+..+. ..+..+..- .........+........+++.+++++
T Consensus 228 ~~~~~~~~~L~~L~l~~~~~~-~--------~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 228 ATLLQRAPQLEELGTGGYTAE-V--------RPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp HHHHHHCTTCSEEECSBCCCC-C--------CHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTT
T ss_pred HHHHhcCCcceEcccccccCc-c--------chhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccC
Confidence 666788899999987765320 0 011111111 111111100 001111111222222346788888888
Q ss_pred CCCCC--CCcccccCCCccEEeCCCCcccc--CCccccCCCCCcEEEecCC---------cCCCCChHHH-hcCCCCCEE
Q 014560 206 MNLSA--IPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRN---------KIKDWPDAIL-TSLSSLSCL 271 (422)
Q Consensus 206 ~~~~~--~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~---------~~~~~~~~~~-~~~~~L~~L 271 (422)
+.+.. +...+..+++|++|++++| +.. ++.....+++|++|++.++ .+++.....+ ..+++|+.|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 77442 2222345788888888887 332 2222335788888888442 3332222222 347889998
Q ss_pred ECCCCCCCcCCCCCCC-CCCCccEEEcc--C----CcCCCCCCC-----CCCCCccCceEEeCCCcCc-cCCccccc-CC
Q 014560 272 KLDNNPLRQVPSDGFK-DIPMLQILDLS--Y----NIASLPENP-----PFSSLPHLQELYLRRMQLR-EAPTDILR-LQ 337 (422)
Q Consensus 272 ~l~~~~~~~~~~~~~~-~~~~L~~l~l~--~----~~~~~~~~~-----~~~~~~~L~~L~l~~~~i~-~l~~~~~~-~~ 337 (422)
.+..+.++......+. .+++|+.|+++ + +.++..... .+..+++|+.|++++ .++ .....+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 8777766543222232 47889999998 3 334322111 145678999999977 555 22233333 78
Q ss_pred CCcEEECCCCCCcc--cCccCcCCCCCCEEeCCCCCCcc-cCCccccCCccccEEEccCCCCC
Q 014560 338 QLRILDLSQNSLQS--IPEGFKNLTSLTELDLSDNNISA-LPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 338 ~L~~l~l~~n~l~~--l~~~~~~~~~L~~L~l~~n~l~~-~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
+|+.|++++|.++. ++.....+++|+.|++++|.++. ....+...+++|++|++++|+++
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCB
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCC
Confidence 99999999999873 22223668999999999999862 22223333489999999999874
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=7.1e-22 Score=174.05 Aligned_cols=134 Identities=26% Similarity=0.296 Sum_probs=114.1
Q ss_pred cCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEE
Q 014560 217 EAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILD 296 (422)
Q Consensus 217 ~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~ 296 (422)
.+++|++|++++|.++.+|..+..+++|+.|++++|.++.+++..|..+++|+.|++++|.+..+++..|..+++|+.|+
T Consensus 75 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~ 154 (290)
T 1p9a_G 75 TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLS 154 (290)
T ss_dssp CCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEE
Confidence 35678888888888888887788888888888888888888877788888899999988888888887788888899999
Q ss_pred ccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCc
Q 014560 297 LSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 297 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~ 350 (422)
+++|.++......+..+++|+.|++++|.++.+|..+...++|+.+++++|.+.
T Consensus 155 L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~ 208 (290)
T 1p9a_G 155 LANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208 (290)
T ss_dssp CTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBC
T ss_pred CCCCcCCccCHHHhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCcc
Confidence 988888887777778888999999999999888888888888999999988765
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.89 E-value=4.7e-22 Score=174.53 Aligned_cols=204 Identities=32% Similarity=0.376 Sum_probs=180.0
Q ss_pred eeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 200 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 200 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
.++..+..+..+|..+. +++++|++++|.++.++. .+.++++|++|++++|.+..++...+..+++|+.|++++|.+
T Consensus 11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 45566666777777553 589999999999998765 688999999999999999998887889999999999999999
Q ss_pred CcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCcc--CCcccccCCCCcEEECCCCCCcccC-cc
Q 014560 279 RQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE--APTDILRLQQLRILDLSQNSLQSIP-EG 355 (422)
Q Consensus 279 ~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~--l~~~~~~~~~L~~l~l~~n~l~~l~-~~ 355 (422)
..+++..+..+++|+.|++++|.+.+.....+..+++|++|++++|.++. +|..+.++++|+.|++++|.++.++ ..
T Consensus 89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 168 (276)
T 2z62_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (276)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH
Confidence 99988889999999999999999998887789999999999999999986 6788999999999999999999775 45
Q ss_pred CcCCCCCC----EEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 356 FKNLTSLT----ELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 356 ~~~~~~L~----~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
+..+++|+ .|++++|.++.++...+.. .+|+.|++++|.++.++..+|..
T Consensus 169 ~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~ 222 (276)
T 2z62_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDR 222 (276)
T ss_dssp GHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTT
T ss_pred hhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcc
Confidence 66666666 8999999999999888887 79999999999999999887653
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.89 E-value=3.4e-21 Score=168.28 Aligned_cols=175 Identities=33% Similarity=0.524 Sum_probs=145.5
Q ss_pred ceeeccCCCCCCCCc-ccccCCCccEEeCCCCccccCCcc-ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCC
Q 014560 199 KELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 276 (422)
Q Consensus 199 ~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 276 (422)
+.++++++.+..++. .+..+++|++|++++|.++.++.. |..+++|++|++++|.+..++...+..+++|+.|++++|
T Consensus 40 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 119 (270)
T 2o6q_A 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRN 119 (270)
T ss_dssp SEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSS
T ss_pred CEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCC
Confidence 344444444444443 455678899999999998887765 578899999999999999888887888999999999999
Q ss_pred CCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCcc
Q 014560 277 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG 355 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~ 355 (422)
.+..+++..|..+++|+.|++++|.+.......+..+++|+.|++++|.++.++.. +.++++|+.|++++|.++.++..
T Consensus 120 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 199 (270)
T 2o6q_A 120 QLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG 199 (270)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred ccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHH
Confidence 99988888888999999999999999888777788899999999999999977764 67889999999999999988654
Q ss_pred -CcCCCCCCEEeCCCCCCc
Q 014560 356 -FKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 356 -~~~~~~L~~L~l~~n~l~ 373 (422)
+..+++|+.|++++|.+.
T Consensus 200 ~~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 200 AFDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTCTTCCEEECCSSCBC
T ss_pred HhccccCCCEEEecCCCee
Confidence 788999999999999875
No 78
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.4e-21 Score=172.36 Aligned_cols=209 Identities=24% Similarity=0.345 Sum_probs=165.3
Q ss_pred ccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCc
Q 014560 6 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 85 (422)
Q Consensus 6 ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~ 85 (422)
+..+.+.++.. +.++++|++|+++++.+..++ .+..+++|++|++++|.+..++. +..+++|++|++++|.++.++
T Consensus 26 l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~ 101 (308)
T 1h6u_A 26 AGKSNVTDTVT--QADLDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS 101 (308)
T ss_dssp TTCSSTTSEEC--HHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG
T ss_pred hCCCCcCceec--HHHcCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch
Confidence 44455555333 678899999999999998887 68889999999999999998876 899999999999999999885
Q ss_pred hhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHH
Q 014560 86 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALL 165 (422)
Q Consensus 86 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l 165 (422)
.+..+++|++|++++|.++.++......+|+.|++++|.++.++. +..+++|+.|++++|.++.++
T Consensus 102 -~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~------------ 167 (308)
T 1h6u_A 102 -AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLT------------ 167 (308)
T ss_dssp -GGTTCTTCCEEECTTSCCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCG------------
T ss_pred -hhcCCCCCCEEECCCCCCCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCCh------------
Confidence 589999999999999999988763333449999999999988765 888999999999998775432
Q ss_pred HHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCc
Q 014560 166 KYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQ 245 (422)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~ 245 (422)
. +..+++|+.|++++|.++.+++ +..+++|+
T Consensus 168 -----------------------------------------------~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~ 198 (308)
T 1h6u_A 168 -----------------------------------------------P-LANLSKLTTLKADDNKISDISP-LASLPNLI 198 (308)
T ss_dssp -----------------------------------------------G-GTTCTTCCEEECCSSCCCCCGG-GGGCTTCC
T ss_pred -----------------------------------------------h-hcCCCCCCEEECCCCccCcChh-hcCCCCCC
Confidence 1 3345677777777777777654 67777788
Q ss_pred EEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCC
Q 014560 246 TLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPS 283 (422)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 283 (422)
.|++++|.+.+.++ +..+++|+.|++++|+++..+.
T Consensus 199 ~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 199 EVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp EEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCE
T ss_pred EEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCe
Confidence 88888887777663 5677788888887777665443
No 79
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=9.8e-21 Score=163.51 Aligned_cols=177 Identities=31% Similarity=0.429 Sum_probs=110.3
Q ss_pred ccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 221 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 221 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
.++++++++.++.+|..+. ++++.|++++|.+..+.+..+..+++|+.|++++|.+..+++..|..+++|+.|++++|
T Consensus 16 ~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 16 KKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp GTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 4455556655555555433 45666666666666655555566666666666666666665555666666666666666
Q ss_pred cCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCCcccCCc
Q 014560 301 IASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNISALPPE 378 (422)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~~~~~~ 378 (422)
.++...+..+..+++|++|++++|.++.++.. +.++++|+.|++++|.++.++. .+..+++|+.|++++|.++.++..
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 66655555566666666666666666655544 3556677777777777766654 466667777777777777666654
Q ss_pred cccCCccccEEEccCCCCCcc
Q 014560 379 LGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 379 ~~~~~~~L~~l~l~~n~~~~i 399 (422)
.+..+++|+.|++++|++...
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 444346777777777776543
No 80
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.87 E-value=2.5e-21 Score=172.29 Aligned_cols=195 Identities=24% Similarity=0.350 Sum_probs=173.7
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
..++.+++.++.+..++ .+..+++|++|++++|.+..+++ +..+++|++|++++|.+...+ .+..+++|+.|++++
T Consensus 41 ~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 41 DGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS--AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG--GGTTCTTCCEEECTT
T ss_pred CCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch--hhcCCCCCCEEECCC
Confidence 47899999999988876 57788999999999999999877 899999999999999998875 478899999999999
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCcc
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 355 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~ 355 (422)
|.+..+++ +..+++|+.|++++|.+++..+ +..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 117 n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~- 190 (308)
T 1h6u_A 117 TQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNKISDISP- 190 (308)
T ss_dssp SCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG-
T ss_pred CCCCCchh--hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCccCcChh-
Confidence 99988765 8899999999999999987654 8889999999999999998876 8889999999999999998875
Q ss_pred CcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchH
Q 014560 356 FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRT 402 (422)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~ 402 (422)
+..+++|+.|++++|.++.++. +..+ ++|+.|++++|+++..+..
T Consensus 191 l~~l~~L~~L~L~~N~l~~~~~-l~~l-~~L~~L~l~~N~i~~~~~~ 235 (308)
T 1h6u_A 191 LASLPNLIEVHLKNNQISDVSP-LANT-SNLFIVTLTNQTITNQPVF 235 (308)
T ss_dssp GGGCTTCCEEECTTSCCCBCGG-GTTC-TTCCEEEEEEEEEECCCEE
T ss_pred hcCCCCCCEEEccCCccCcccc-ccCC-CCCCEEEccCCeeecCCee
Confidence 8889999999999999998874 5555 9999999999999776553
No 81
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.87 E-value=2e-24 Score=210.79 Aligned_cols=385 Identities=17% Similarity=0.127 Sum_probs=241.9
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccc-cCC---------------chhhhccccCCeEeccCCccccC-CCCC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLL-NGM---------------PETIGSLSRLIRLDLHQNRILSI-PSSI 65 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i-~~~---------------~~~~~~~~~L~~L~l~~~~~~~l-~~~~ 65 (422)
+++++++.. ..+...+.++++|++|+++++.. ..+ +.....+++|++|++++|.+... +..+
T Consensus 47 ~l~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l 125 (594)
T 2p1m_B 47 KVFIGNCYA-VSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELI 125 (594)
T ss_dssp EEEESSTTS-SCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHH
T ss_pred EEeeccccc-cCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHH
Confidence 455555432 34556799999999999998752 211 12245789999999999987622 2334
Q ss_pred c-cCCCCCEEEcCCC-cCcc--CchhhhCCCCCcEEEccCCccccc-----ccccccc-eecEEEcCCCC--CCC--CCc
Q 014560 66 S-GCCSLAEFYMGNN-ALSA--LPAELGKLSKLGTLDLHSNQLKEY-----CVEACQL-RLSVLDLSNNS--LSG--LPP 131 (422)
Q Consensus 66 ~-~~~~L~~L~l~~~-~i~~--l~~~l~~~~~L~~L~l~~~~~~~l-----~~~~~~~-~L~~L~l~~~~--~~~--~~~ 131 (422)
. .+++|++|++++| .++. ++..+.++++|++|++++|.+++. +...... +|+.|++++|. +.. +..
T Consensus 126 ~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~ 205 (594)
T 2p1m_B 126 AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALER 205 (594)
T ss_dssp HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHH
T ss_pred HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHH
Confidence 3 6899999999999 5653 566667899999999999987642 2222223 49999999987 221 222
Q ss_pred cccccCCccEEEcCCCc-cccccccccCCCChHHHHHHHccCCCCccccc----cchhhhHHHhhhcccccccee-eccC
Q 014560 132 EIGKMTTLRKLLLTGNP-LRTLRSSLVNGPTPALLKYLRSRLPENEDSEA----STTKEDLITMATRLSVTSKEL-SLEG 205 (422)
Q Consensus 132 ~~~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~l-~l~~ 205 (422)
....+++|++|++++|. +..+ +..+.... .+..+..... ..............+.+++.+ .+.+
T Consensus 206 l~~~~~~L~~L~L~~~~~~~~l---------~~~~~~~~-~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~ 275 (594)
T 2p1m_B 206 LVTRCPNLKSLKLNRAVPLEKL---------ATLLQRAP-QLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWD 275 (594)
T ss_dssp HHHHCTTCCEEECCTTSCHHHH---------HHHHHHCT-TCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBT
T ss_pred HHHhCCCCcEEecCCCCcHHHH---------HHHHhcCC-cceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcc
Confidence 23567999999999882 2211 11111111 1111110000 001111111223444566666 3443
Q ss_pred CCCCCCCcccccCCCccEEeCCCCcccc--CCccccCCCCCcEEEecCCcCCCCC-hHHHhcCCCCCEEECCCC------
Q 014560 206 MNLSAIPSEIWEAGEITKLDLSRNSIQE--LPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNN------ 276 (422)
Q Consensus 206 ~~~~~~~~~~~~~~~L~~L~l~~~~l~~--~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~------ 276 (422)
.....++.....+++|++|++++|.+.. +...+..+++|++|++++| +.+.. ......+++|++|++.++
T Consensus 276 ~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~ 354 (594)
T 2p1m_B 276 AVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVME 354 (594)
T ss_dssp CCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSS
T ss_pred cchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccc
Confidence 3333455444567899999999998664 3333568899999999988 33221 122346899999999542
Q ss_pred ---CCCcCCCCCC-CCCCCccEEEccCCcCCCCCCCCCC-CCccCceEEeC--C----CcCccCCc------ccccCCCC
Q 014560 277 ---PLRQVPSDGF-KDIPMLQILDLSYNIASLPENPPFS-SLPHLQELYLR--R----MQLREAPT------DILRLQQL 339 (422)
Q Consensus 277 ---~~~~~~~~~~-~~~~~L~~l~l~~~~~~~~~~~~~~-~~~~L~~L~l~--~----~~i~~l~~------~~~~~~~L 339 (422)
.++......+ ..+++|+.|.+..+.+++.....+. .+++|+.|++. + +.++..|. .+.++++|
T Consensus 355 ~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L 434 (594)
T 2p1m_B 355 PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDL 434 (594)
T ss_dssp CSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTC
T ss_pred cCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCc
Confidence 2222111111 2478999998887777643333333 57899999999 4 45664332 25678999
Q ss_pred cEEECCCCCCcc-cCccC-cCCCCCCEEeCCCCCCc-ccCCccccCCccccEEEccCCCCCccc
Q 014560 340 RILDLSQNSLQS-IPEGF-KNLTSLTELDLSDNNIS-ALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 340 ~~l~l~~n~l~~-l~~~~-~~~~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
+.|++++ .++. .+..+ ..+++|+.|++++|.++ ..+..+...+++|++|++++|+++...
T Consensus 435 ~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 435 RRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp CEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred cEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 9999987 5552 22223 34889999999999986 223333233499999999999985433
No 82
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=6.5e-22 Score=169.69 Aligned_cols=192 Identities=16% Similarity=0.242 Sum_probs=120.7
Q ss_pred CCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCc-CCCCChHHHhcCCCCCEEECCC-CCCCcCCCC
Q 014560 208 LSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNK-IKDWPDAILTSLSSLSCLKLDN-NPLRQVPSD 284 (422)
Q Consensus 208 ~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~ 284 (422)
+..+|. + ..++++|+++++.++.+++ .|..+++|+.|++++|. +..+++..|..+++|++|++++ |.+..+++.
T Consensus 23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~ 99 (239)
T 2xwt_C 23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPD 99 (239)
T ss_dssp CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTT
T ss_pred ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHH
Confidence 445554 2 2366677777766666554 36666677777777664 6666665566666777777766 666666666
Q ss_pred CCCCCCCccEEEccCCcCCCCCCCCCCCCccCc---eEEeCCC-cCccCCcc-cccCCCCc-EEECCCCCCcccCccCcC
Q 014560 285 GFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ---ELYLRRM-QLREAPTD-ILRLQQLR-ILDLSQNSLQSIPEGFKN 358 (422)
Q Consensus 285 ~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~---~L~l~~~-~i~~l~~~-~~~~~~L~-~l~l~~n~l~~l~~~~~~ 358 (422)
.|..+++|+.|++++|.+++... +..+++|+ .|++++| .++.++.. +.++++|+ .+++++|.++.+|.....
T Consensus 100 ~f~~l~~L~~L~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~ 177 (239)
T 2xwt_C 100 ALKELPLLKFLGIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN 177 (239)
T ss_dssp SEECCTTCCEEEEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT
T ss_pred HhCCCCCCCEEeCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC
Confidence 66666677777777666665332 55566665 6777766 66655543 55666676 777777766666554323
Q ss_pred CCCCCEEeCCCCC-CcccCCccccCC-ccccEEEccCCCCCccchHHH
Q 014560 359 LTSLTELDLSDNN-ISALPPELGLLE-PSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 359 ~~~L~~L~l~~n~-l~~~~~~~~~~~-~~L~~l~l~~n~~~~i~~~~~ 404 (422)
.++|+.|++++|+ ++.++...+..+ ++|++|++++|+++.++...|
T Consensus 178 ~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~ 225 (239)
T 2xwt_C 178 GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGL 225 (239)
T ss_dssp TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTC
T ss_pred CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHh
Confidence 3667777777773 666666555555 667777777776666665544
No 83
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.86 E-value=2.3e-21 Score=166.22 Aligned_cols=195 Identities=20% Similarity=0.261 Sum_probs=172.5
Q ss_pred cccceeeccCCCCCCCCc-ccccCCCccEEeCCCCc-cccCCc-cccCCCCCcEEEecC-CcCCCCChHHHhcCCCCCEE
Q 014560 196 VTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNS-IQELPP-ELSSCASLQTLILSR-NKIKDWPDAILTSLSSLSCL 271 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~-l~~~~~-~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L 271 (422)
..++.++++++.+..++. .+..+++|++|++++|. ++.+++ .|.++++|++|++++ |.+..+++..|..+++|+.|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 478999999999998877 55678999999999997 888776 588999999999998 89999988888999999999
Q ss_pred ECCCCCCCcCCCCCCCCCCCcc---EEEccCC-cCCCCCCCCCCCCccCc-eEEeCCCcCccCCcccccCCCCcEEECCC
Q 014560 272 KLDNNPLRQVPSDGFKDIPMLQ---ILDLSYN-IASLPENPPFSSLPHLQ-ELYLRRMQLREAPTDILRLQQLRILDLSQ 346 (422)
Q Consensus 272 ~l~~~~~~~~~~~~~~~~~~L~---~l~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~i~~l~~~~~~~~~L~~l~l~~ 346 (422)
++++|.+..++. +..+++|+ .+++++| .+.......|..+++|+ .|++++|.++.+|......++|+.|++++
T Consensus 111 ~l~~n~l~~lp~--~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~ 188 (239)
T 2xwt_C 111 GIFNTGLKMFPD--LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNK 188 (239)
T ss_dssp EEEEECCCSCCC--CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTT
T ss_pred eCCCCCCccccc--cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCC
Confidence 999999998875 78888888 9999999 99888888899999999 99999999998887765558999999999
Q ss_pred CC-CcccC-ccCcCC-CCCCEEeCCCCCCcccCCccccCCccccEEEccCCC
Q 014560 347 NS-LQSIP-EGFKNL-TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNP 395 (422)
Q Consensus 347 n~-l~~l~-~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~ 395 (422)
|. ++.++ ..|..+ ++|+.|++++|+++.+|.. .. ++|+.|+++++.
T Consensus 189 n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--~~-~~L~~L~l~~~~ 237 (239)
T 2xwt_C 189 NKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--GL-EHLKELIARNTW 237 (239)
T ss_dssp CTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--TC-TTCSEEECTTC-
T ss_pred CCCcccCCHHHhhccccCCcEEECCCCccccCChh--Hh-ccCceeeccCcc
Confidence 95 99885 558888 9999999999999999886 23 889999999873
No 84
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.86 E-value=2.7e-20 Score=162.69 Aligned_cols=182 Identities=31% Similarity=0.401 Sum_probs=143.3
Q ss_pred cccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccE
Q 014560 215 IWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQI 294 (422)
Q Consensus 215 ~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 294 (422)
...+++++.|.++++.+..++ .+..+++|+.|++++|.+...+ .+..+++|++|++++|.+..+++..+..+++|+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 113 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS--ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKE 113 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCE
T ss_pred cccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch--hhcCCCCCCEEECCCCccCccChhHhcCCcCCCE
Confidence 344678888888888877665 3677888888888888877763 4677888888888888888887777788888888
Q ss_pred EEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCcc-CcCCCCCCEEeCCCCCC
Q 014560 295 LDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNI 372 (422)
Q Consensus 295 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l 372 (422)
|++++|.+.+..+..+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|.+
T Consensus 114 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l 193 (272)
T 3rfs_A 114 LVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL 193 (272)
T ss_dssp EECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence 88888888877777788888888888888888876655 46788888888888888877544 67788888888888888
Q ss_pred cccCCccccCCccccEEEccCCCCCcc
Q 014560 373 SALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 373 ~~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
+.++...+..+++|+.|++++|++...
T Consensus 194 ~~~~~~~~~~l~~L~~L~l~~N~~~~~ 220 (272)
T 3rfs_A 194 KSVPDGVFDRLTSLQYIWLHDNPWDCT 220 (272)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred CccCHHHHhCCcCCCEEEccCCCcccc
Confidence 877776554448888888888887643
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.85 E-value=6.3e-20 Score=158.44 Aligned_cols=178 Identities=30% Similarity=0.418 Sum_probs=161.4
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 274 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 274 (422)
...+.++++++.+..+|..+. +.++.|+++++.+..+++ .+.++++|++|++++|.+...++..+..+++|+.|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 356789999999999998765 689999999999998655 58899999999999999999988888999999999999
Q ss_pred CCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc-ccccCCCCcEEECCCCCCcccC
Q 014560 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSIP 353 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~l~l~~n~l~~l~ 353 (422)
+|.+..+++..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.++.++
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 999999998889999999999999999998888888999999999999999998877 4788999999999999999886
Q ss_pred c-cCcCCCCCCEEeCCCCCCccc
Q 014560 354 E-GFKNLTSLTELDLSDNNISAL 375 (422)
Q Consensus 354 ~-~~~~~~~L~~L~l~~n~l~~~ 375 (422)
. .+..+++|+.|++++|.+.-.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 5 688999999999999998643
No 86
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.85 E-value=2.3e-20 Score=163.17 Aligned_cols=193 Identities=27% Similarity=0.368 Sum_probs=169.7
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
..++.+.+.++.+..++ .+..+++|++|++++|.+..++ .+..+++|++|++++|.+..+++..+..+++|++|++++
T Consensus 41 ~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 118 (272)
T 3rfs_A 41 NSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118 (272)
T ss_dssp TTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred cceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCC
Confidence 57889999998887765 4677899999999999998864 688999999999999999999888889999999999999
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCc
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPE 354 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~ 354 (422)
|.+..+++..+..+++|+.|++++|.+++..+..+..+++|+.|++++|.++.++.. +.++++|+.|++++|.++.++.
T Consensus 119 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 198 (272)
T 3rfs_A 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198 (272)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred CcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCH
Confidence 999999888889999999999999999988888889999999999999999977765 5789999999999999998755
Q ss_pred -cCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCC
Q 014560 355 -GFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 355 -~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
.+..+++|+.|++++|.+... |++++.++++.|.+.
T Consensus 199 ~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~ 235 (272)
T 3rfs_A 199 GVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHS 235 (272)
T ss_dssp TTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTG
T ss_pred HHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCC
Confidence 478999999999999987621 367788877777654
No 87
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.84 E-value=9.6e-22 Score=177.80 Aligned_cols=123 Identities=20% Similarity=0.201 Sum_probs=63.9
Q ss_pred ccceecccccccCCchhhhcc--ccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCcc--CchhhhCCCCCcEEEcc
Q 014560 25 LTELIASKNLLNGMPETIGSL--SRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA--LPAELGKLSKLGTLDLH 100 (422)
Q Consensus 25 L~~L~l~~~~i~~~~~~~~~~--~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~--l~~~l~~~~~L~~L~l~ 100 (422)
++.++++++.+. +..+..+ ++++.|+++++.+...+..+..+++|++|++++|.++. ++..+..+++|++|+++
T Consensus 49 ~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~ 126 (336)
T 2ast_B 49 WQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126 (336)
T ss_dssp SSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECT
T ss_pred heeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCc
Confidence 455555555443 2333343 55555555555555444444455555555555555541 44455555555666555
Q ss_pred CCcccc-cccccccce-ecEEEcCCC-CCCC--CCccccccCCccEEEcCCC-cc
Q 014560 101 SNQLKE-YCVEACQLR-LSVLDLSNN-SLSG--LPPEIGKMTTLRKLLLTGN-PL 149 (422)
Q Consensus 101 ~~~~~~-l~~~~~~~~-L~~L~l~~~-~~~~--~~~~~~~l~~L~~L~l~~~-~~ 149 (422)
+|.+.+ .+..+...+ |+.|++++| .++. ++..+..+++|++|++++| .+
T Consensus 127 ~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l 181 (336)
T 2ast_B 127 GLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181 (336)
T ss_dssp TCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTC
T ss_pred CcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCc
Confidence 555542 222222222 555666655 3443 3444566677777777666 44
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.84 E-value=5.9e-23 Score=189.26 Aligned_cols=168 Identities=22% Similarity=0.281 Sum_probs=80.8
Q ss_pred ccccCCCccEEeCCCCcccc-----CCccccCC---------CCCcEEEecCCcCCCCCh----HHHhcCCCCCEEECCC
Q 014560 214 EIWEAGEITKLDLSRNSIQE-----LPPELSSC---------ASLQTLILSRNKIKDWPD----AILTSLSSLSCLKLDN 275 (422)
Q Consensus 214 ~~~~~~~L~~L~l~~~~l~~-----~~~~~~~~---------~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~ 275 (422)
.+..+++|++|++++|.++. ++..+..+ ++|++|++++|.+..... ..+..+++|+.|++++
T Consensus 117 ~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~ 196 (386)
T 2ca6_A 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196 (386)
T ss_dssp HHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred HHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcC
Confidence 34445677777777776653 22222233 667777777666653221 2344566666666666
Q ss_pred CCCCc-----CCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCc
Q 014560 276 NPLRQ-----VPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 276 ~~~~~-----~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~ 350 (422)
|.+.. +.+..+..+++|+.|++++|.++.... ..++..+..+++|+.|++++|.++
T Consensus 197 n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~-------------------~~l~~~l~~~~~L~~L~L~~n~i~ 257 (386)
T 2ca6_A 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS-------------------SALAIALKSWPNLRELGLNDCLLS 257 (386)
T ss_dssp SCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH-------------------HHHHHHGGGCTTCCEEECTTCCCC
T ss_pred CCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHH-------------------HHHHHHHccCCCcCEEECCCCCCc
Confidence 65542 111124444555555555554421000 233344444555555555555554
Q ss_pred c-----cCccCc--CCCCCCEEeCCCCCCcc-----cCCccccCCccccEEEccCCCCCccc
Q 014560 351 S-----IPEGFK--NLTSLTELDLSDNNISA-----LPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 351 ~-----l~~~~~--~~~~L~~L~l~~n~l~~-----~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
. ++..+. .+++|+.|++++|.++. ++..++..+++|++|++++|+++...
T Consensus 258 ~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 258 ARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred hhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 2 233332 24555555555555543 44444222255555555555554433
No 89
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.83 E-value=4.2e-22 Score=183.55 Aligned_cols=234 Identities=21% Similarity=0.201 Sum_probs=144.2
Q ss_pred HhhcccccceecccccccC-----CchhhhccccCCeEeccCCccccC----CCC-------CccCCCCCEEEcCCCcCc
Q 014560 19 IASWTMLTELIASKNLLNG-----MPETIGSLSRLIRLDLHQNRILSI----PSS-------ISGCCSLAEFYMGNNALS 82 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~-----~~~~~~~~~~L~~L~l~~~~~~~l----~~~-------~~~~~~L~~L~l~~~~i~ 82 (422)
+..+++|++|++++|.++. ++..+..+++|++|++++|.+..+ |.. +..+++|++|++++|.++
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~ 107 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG 107 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC
Confidence 7788889999999988864 234467788999999988765533 322 367888999999988887
Q ss_pred c-----CchhhhCCCCCcEEEccCCcccccc-----ccccc----------ceecEEEcCCCCCCC--CC---ccccccC
Q 014560 83 A-----LPAELGKLSKLGTLDLHSNQLKEYC-----VEACQ----------LRLSVLDLSNNSLSG--LP---PEIGKMT 137 (422)
Q Consensus 83 ~-----l~~~l~~~~~L~~L~l~~~~~~~l~-----~~~~~----------~~L~~L~l~~~~~~~--~~---~~~~~l~ 137 (422)
. ++..+..+++|++|++++|.+.... ..+.. .+|+.|++++|.+.. ++ ..+..++
T Consensus 108 ~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 187 (386)
T 2ca6_A 108 PTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 187 (386)
T ss_dssp TTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCC
Confidence 5 6777888889999999888876322 21211 247777777777652 22 3455667
Q ss_pred CccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCccccc
Q 014560 138 TLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWE 217 (422)
Q Consensus 138 ~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~ 217 (422)
+|++|++++|.+....... ..+..+..
T Consensus 188 ~L~~L~L~~n~l~~~g~~~-----------------------------------------------------l~~~~l~~ 214 (386)
T 2ca6_A 188 LLHTVKMVQNGIRPEGIEH-----------------------------------------------------LLLEGLAY 214 (386)
T ss_dssp TCCEEECCSSCCCHHHHHH-----------------------------------------------------HHHTTGGG
T ss_pred CcCEEECcCCCCCHhHHHH-----------------------------------------------------HHHHHhhc
Confidence 7777777776653210000 00113344
Q ss_pred CCCccEEeCCCCccc-----cCCccccCCCCCcEEEecCCcCCCCCh----HHHhc--CCCCCEEECCCCCCCc-----C
Q 014560 218 AGEITKLDLSRNSIQ-----ELPPELSSCASLQTLILSRNKIKDWPD----AILTS--LSSLSCLKLDNNPLRQ-----V 281 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~-----~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~~~--~~~L~~L~l~~~~~~~-----~ 281 (422)
+++|+.|++++|.++ .++..+..+++|++|++++|.+..... ..+.. +++|+.|++++|.++. +
T Consensus 215 ~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l 294 (386)
T 2ca6_A 215 CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTL 294 (386)
T ss_dssp CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHH
T ss_pred CCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHH
Confidence 556677777777663 255556666677777777766655321 12222 5666666666666655 3
Q ss_pred CCCCCCCCCCccEEEccCCcCCCC
Q 014560 282 PSDGFKDIPMLQILDLSYNIASLP 305 (422)
Q Consensus 282 ~~~~~~~~~~L~~l~l~~~~~~~~ 305 (422)
+...+.++++|+.|++++|.+++.
T Consensus 295 ~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 295 KTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHHHHhcCCCceEEEccCCcCCcc
Confidence 322113456666666666655543
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.83 E-value=3e-21 Score=176.07 Aligned_cols=107 Identities=15% Similarity=0.114 Sum_probs=78.1
Q ss_pred eeeccCCcceecChhHHhhcccccceecccccccCCc-----hhhhccc-cCCeEeccCCccccC-CCCCccC-----CC
Q 014560 3 KLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-----ETIGSLS-RLIRLDLHQNRILSI-PSSISGC-----CS 70 (422)
Q Consensus 3 ~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-----~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~-----~~ 70 (422)
.++++.|+++......+...++|++|++++|.++..+ ..+..++ +|++|++++|.+... +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 4678888888655554555566999999999997764 5677777 899999999988755 3444443 88
Q ss_pred CCEEEcCCCcCccC-ch----hhhCC-CCCcEEEccCCccccccc
Q 014560 71 LAEFYMGNNALSAL-PA----ELGKL-SKLGTLDLHSNQLKEYCV 109 (422)
Q Consensus 71 L~~L~l~~~~i~~l-~~----~l~~~-~~L~~L~l~~~~~~~l~~ 109 (422)
|++|++++|.++.. +. .+..+ ++|++|++++|.++..+.
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 126 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSS 126 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHH
Confidence 89999998888744 33 24555 788888888888775443
No 91
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.82 E-value=4.7e-19 Score=168.94 Aligned_cols=187 Identities=29% Similarity=0.404 Sum_probs=162.4
Q ss_pred cccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 196 VTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 196 ~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
..++.++++++.+..+|..+. ++|++|++++|.++.+| ..+++|+.|++++|.+..++. +.. +|+.|++++
T Consensus 59 ~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~--l~~--~L~~L~Ls~ 129 (571)
T 3cvr_A 59 NQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE--LPA--SLKHLDVDN 129 (571)
T ss_dssp TTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC--CCT--TCCEEECCS
T ss_pred CCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch--hhc--CCCEEECCC
Confidence 479999999999999888664 78999999999999888 457899999999999999776 443 999999999
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCcc
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEG 355 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~ 355 (422)
|.++.++. .+++|+.|++++|.+++... .+++|+.|++++|.++.+|. +. ++|+.|++++|.++.+|.
T Consensus 130 N~l~~lp~----~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 130 NQLTMLPE----LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp SCCSCCCC----CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CcCCCCCC----cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 99998776 57999999999999987543 57899999999999999988 55 899999999999999988
Q ss_pred CcCCCCC-------CEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 356 FKNLTSL-------TELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 356 ~~~~~~L-------~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
+.. +| +.|++++|.|+.+|..++.+ ++|+.|++++|+++...+..+..
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l-~~L~~L~L~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCRENRITHIPENILSL-DPTCTIILEDNPLSSRIRESLSQ 252 (571)
T ss_dssp CC----------CCEEEECCSSCCCCCCGGGGGS-CTTEEEECCSSSCCHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCCcceecCHHHhcC-CCCCEEEeeCCcCCCcCHHHHHH
Confidence 654 77 99999999999999999986 99999999999998766655544
No 92
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.6e-20 Score=165.21 Aligned_cols=83 Identities=33% Similarity=0.467 Sum_probs=48.3
Q ss_pred CCccCceEEeCCCcCccC-CcccccC---CCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCcccc
Q 014560 312 SLPHLQELYLRRMQLREA-PTDILRL---QQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQ 387 (422)
Q Consensus 312 ~~~~L~~L~l~~~~i~~l-~~~~~~~---~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~ 387 (422)
.+++|++|++++|.++.. |..+..+ ++|+.|++++|.++.+|..+. ++|+.|++++|+|+.+|. ...+ ++|+
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~-~~~l-~~L~ 297 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ-PDEL-PEVD 297 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC-TTSC-CCCS
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch-hhhC-CCcc
Confidence 345555555555555543 4333333 466666666666666665553 566777777776666544 3333 6677
Q ss_pred EEEccCCCCCc
Q 014560 388 ALRLDGNPLRS 398 (422)
Q Consensus 388 ~l~l~~n~~~~ 398 (422)
.|++++|++++
T Consensus 298 ~L~L~~N~l~~ 308 (310)
T 4glp_A 298 NLTLDGNPFLV 308 (310)
T ss_dssp CEECSSTTTSC
T ss_pred EEECcCCCCCC
Confidence 77777776653
No 93
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.82 E-value=3.5e-20 Score=165.28 Aligned_cols=180 Identities=23% Similarity=0.228 Sum_probs=149.4
Q ss_pred CCccEEeCCCCcccc-CCccc--cCCCCCcEEEecCCcCCCCCh----HHHhcCCCCCEEECCCCCCCcCCCCCCCCCCC
Q 014560 219 GEITKLDLSRNSIQE-LPPEL--SSCASLQTLILSRNKIKDWPD----AILTSLSSLSCLKLDNNPLRQVPSDGFKDIPM 291 (422)
Q Consensus 219 ~~L~~L~l~~~~l~~-~~~~~--~~~~~L~~L~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 291 (422)
++|++|++++|.+.. .|..+ ..+++|++|++++|.+....+ ..+..+++|+.|++++|.+..+++..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 468999999998876 55555 788999999999998886432 33456899999999999999998888999999
Q ss_pred ccEEEccCCcCCC---C-CCCCCCCCccCceEEeCCCcCccCCcc----cccCCCCcEEECCCCCCccc-CccCcCC---
Q 014560 292 LQILDLSYNIASL---P-ENPPFSSLPHLQELYLRRMQLREAPTD----ILRLQQLRILDLSQNSLQSI-PEGFKNL--- 359 (422)
Q Consensus 292 L~~l~l~~~~~~~---~-~~~~~~~~~~L~~L~l~~~~i~~l~~~----~~~~~~L~~l~l~~n~l~~l-~~~~~~~--- 359 (422)
|++|++++|.+.+ . ....+..+++|++|++++|.++.++.. +.++++|++|++++|.++.+ |..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~ 250 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWS 250 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCc
Confidence 9999999998754 1 123346789999999999999866553 46789999999999999976 7776666
Q ss_pred CCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccch
Q 014560 360 TSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 360 ~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
++|++|++++|+|+.+|..+. ++|++|++++|+++.++.
T Consensus 251 ~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~ 289 (310)
T 4glp_A 251 SALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ 289 (310)
T ss_dssp TTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC
T ss_pred CcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch
Confidence 699999999999999988774 799999999999998754
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.81 E-value=5.2e-19 Score=155.90 Aligned_cols=191 Identities=23% Similarity=0.316 Sum_probs=119.9
Q ss_pred cccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCc
Q 014560 24 MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQ 103 (422)
Q Consensus 24 ~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~ 103 (422)
.+..+.+..+.+..+. .+..+++|++|++++|.+..++ .+..+++|++|++++|.++.++. +..+++|++|++++|.
T Consensus 25 ~~~~~~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~ 101 (291)
T 1h6t_A 25 ETIKDNLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENK 101 (291)
T ss_dssp HHHHHHTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred HHHHHHhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCc
Confidence 3444455555554332 2345667777777777666664 36667777777777777776655 6677777777777777
Q ss_pred ccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccch
Q 014560 104 LKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTT 183 (422)
Q Consensus 104 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 183 (422)
++.++.......|+.|++++|.+..+ ..+..+++|+.|++++|.++.+
T Consensus 102 l~~~~~l~~l~~L~~L~L~~n~i~~~-~~l~~l~~L~~L~l~~n~l~~~------------------------------- 149 (291)
T 1h6t_A 102 VKDLSSLKDLKKLKSLSLEHNGISDI-NGLVHLPQLESLYLGNNKITDI------------------------------- 149 (291)
T ss_dssp CCCGGGGTTCTTCCEEECTTSCCCCC-GGGGGCTTCCEEECCSSCCCCC-------------------------------
T ss_pred CCCChhhccCCCCCEEECCCCcCCCC-hhhcCCCCCCEEEccCCcCCcc-------------------------------
Confidence 76655533333377777777777665 3467777888888877766432
Q ss_pred hhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh
Q 014560 184 KEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT 263 (422)
Q Consensus 184 ~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 263 (422)
..+..+++|+.|++++|.++.+++ +..+++|+.|++++|.+.+++. +.
T Consensus 150 -----------------------------~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~--l~ 197 (291)
T 1h6t_A 150 -----------------------------TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA--LA 197 (291)
T ss_dssp -----------------------------GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG--GT
T ss_pred -----------------------------hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh--hc
Confidence 123345566677777776666554 6666777777777776666543 56
Q ss_pred cCCCCCEEECCCCCCCcC
Q 014560 264 SLSSLSCLKLDNNPLRQV 281 (422)
Q Consensus 264 ~~~~L~~L~l~~~~~~~~ 281 (422)
.+++|+.|++++|++...
T Consensus 198 ~l~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 198 GLKNLDVLELFSQECLNK 215 (291)
T ss_dssp TCTTCSEEEEEEEEEECC
T ss_pred cCCCCCEEECcCCcccCC
Confidence 667777777776665543
No 95
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.81 E-value=1.6e-20 Score=169.83 Aligned_cols=219 Identities=19% Similarity=0.200 Sum_probs=119.6
Q ss_pred cCCeEeccCCccccCCCCCccC--CCCCEEEcCCCcCccCchhhhCCCCCcEEEccCCcccc--cccccccce-ecEEEc
Q 014560 47 RLIRLDLHQNRILSIPSSISGC--CSLAEFYMGNNALSALPAELGKLSKLGTLDLHSNQLKE--YCVEACQLR-LSVLDL 121 (422)
Q Consensus 47 ~L~~L~l~~~~~~~l~~~~~~~--~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~--l~~~~~~~~-L~~L~l 121 (422)
.++.++++++.+. +..+..+ ++++.++++++.+...+..+..+++|++|++++|.+.. ++......+ |+.|++
T Consensus 48 ~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L 125 (336)
T 2ast_B 48 LWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL 125 (336)
T ss_dssp TSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEEC
T ss_pred hheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeC
Confidence 4677777776654 3344555 67777777777776554455667777777777777653 444444443 777777
Q ss_pred CCCCCCC-CCccccccCCccEEEcCCC-ccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccc
Q 014560 122 SNNSLSG-LPPEIGKMTTLRKLLLTGN-PLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSK 199 (422)
Q Consensus 122 ~~~~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 199 (422)
++|.+.. .+..+..+++|++|++++| .++..
T Consensus 126 ~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~----------------------------------------------- 158 (336)
T 2ast_B 126 EGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEF----------------------------------------------- 158 (336)
T ss_dssp TTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHH-----------------------------------------------
T ss_pred cCcccCHHHHHHHhcCCCCCEEECCCCCCCCHH-----------------------------------------------
Confidence 7777664 4555666777777777776 33210
Q ss_pred eeeccCCCCCCCCcccccCCCccEEeCCCC-cccc--CCccccCCC-CCcEEEecCC--cCCC-CChHHHhcCCCCCEEE
Q 014560 200 ELSLEGMNLSAIPSEIWEAGEITKLDLSRN-SIQE--LPPELSSCA-SLQTLILSRN--KIKD-WPDAILTSLSSLSCLK 272 (422)
Q Consensus 200 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~~--~~~~~~~~~-~L~~L~l~~~--~~~~-~~~~~~~~~~~L~~L~ 272 (422)
.++..+..+++|++|++++| .++. ++..+..++ +|++|++++| .+++ ..+..+..+++|+.|+
T Consensus 159 ----------~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~ 228 (336)
T 2ast_B 159 ----------ALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 228 (336)
T ss_dssp ----------HHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEE
T ss_pred ----------HHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEe
Confidence 00111223345555555555 5543 333344555 5666666655 2221 1112234556666666
Q ss_pred CCCCC-CCcCCCCCCCCCCCccEEEccCCc-CCCCCCCCCCCCccCceEEeCCC
Q 014560 273 LDNNP-LRQVPSDGFKDIPMLQILDLSYNI-ASLPENPPFSSLPHLQELYLRRM 324 (422)
Q Consensus 273 l~~~~-~~~~~~~~~~~~~~L~~l~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 324 (422)
+++|. ++......+..+++|+.|++++|. +.......+..+++|+.|++++|
T Consensus 229 l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 282 (336)
T 2ast_B 229 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 282 (336)
T ss_dssp CTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred CCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence 66655 333222234555666666666553 21111123455666666666666
No 96
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.80 E-value=3.8e-19 Score=169.55 Aligned_cols=191 Identities=25% Similarity=0.312 Sum_probs=137.8
Q ss_pred HHhhcc-----cccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCC
Q 014560 18 LIASWT-----MLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLS 92 (422)
Q Consensus 18 ~~~~~~-----~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~ 92 (422)
++..++ +|++|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|+.|++++|.++.+|. +..
T Consensus 49 ~~~~l~~C~~~~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~-- 120 (571)
T 3cvr_A 49 AVSLLKECLINQFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA-- 120 (571)
T ss_dssp HHHHHHHHHHTTCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--
T ss_pred hhhhccccccCCccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--
Confidence 355554 88999999998888876553 78999999999888887 447889999999998888877 554
Q ss_pred CCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccC
Q 014560 93 KLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRL 172 (422)
Q Consensus 93 ~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 172 (422)
+|++|++++|.++.++. ....|+.|++++|.++.+|. .+++|+.|++++|.++.++. +.
T Consensus 121 ~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l~-------------- 179 (571)
T 3cvr_A 121 SLKHLDVDNNQLTMLPE--LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--LP-------------- 179 (571)
T ss_dssp TCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--CC--------------
T ss_pred CCCEEECCCCcCCCCCC--cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--hh--------------
Confidence 89999999999888777 33458999999998888776 56888888888888765543 10
Q ss_pred CCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCc-------cEEeCCCCccccCCccccCCCCCc
Q 014560 173 PENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEI-------TKLDLSRNSIQELPPELSSCASLQ 245 (422)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L-------~~L~l~~~~l~~~~~~~~~~~~L~ 245 (422)
.+++.+++++|.+..+|. +.. +| +.|++++|.++.+|..+..+++|+
T Consensus 180 -----------------------~~L~~L~Ls~N~L~~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~ 233 (571)
T 3cvr_A 180 -----------------------ESLEALDVSTNLLESLPA-VPV--RNHHSEETEIFFRCRENRITHIPENILSLDPTC 233 (571)
T ss_dssp -----------------------TTCCEEECCSSCCSSCCC-CC----------CCEEEECCSSCCCCCCGGGGGSCTTE
T ss_pred -----------------------CCCCEEECcCCCCCchhh-HHH--hhhcccccceEEecCCCcceecCHHHhcCCCCC
Confidence 356666666666666655 332 45 677777777766766666667777
Q ss_pred EEEecCCcCCCCChHHHh
Q 014560 246 TLILSRNKIKDWPDAILT 263 (422)
Q Consensus 246 ~L~l~~~~~~~~~~~~~~ 263 (422)
.|++++|.+....+..+.
T Consensus 234 ~L~L~~N~l~~~~p~~l~ 251 (571)
T 3cvr_A 234 TIILEDNPLSSRIRESLS 251 (571)
T ss_dssp EEECCSSSCCHHHHHHHH
T ss_pred EEEeeCCcCCCcCHHHHH
Confidence 777777766654444443
No 97
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.80 E-value=3.9e-19 Score=156.72 Aligned_cols=171 Identities=30% Similarity=0.391 Sum_probs=101.2
Q ss_pred CCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEc
Q 014560 218 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 297 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 297 (422)
+++|+.|++++|.+..++ .+..+++|+.|++++|.+.+.++ +..+++|+.|++++|.+..++. +..+++|+.|++
T Consensus 45 l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L 119 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSL 119 (291)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGGG--GTTCTTCCEEEC
T ss_pred cCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCChh--hccCCCCCEEEC
Confidence 455666666666665554 25556666666666666665544 4556666666666666655433 555666666666
Q ss_pred cCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCC
Q 014560 298 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 377 (422)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~ 377 (422)
++|.+.+. ..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++. +..+++|+.|++++|.++.++.
T Consensus 120 ~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~L~~N~i~~l~~ 195 (291)
T 1h6t_A 120 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLRA 195 (291)
T ss_dssp TTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCGG
T ss_pred CCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh-hcCCCccCEEECCCCcCCCChh
Confidence 66665553 2355566666666666666655 345566666666666666665544 5566666666666666665543
Q ss_pred ccccCCccccEEEccCCCCCcc
Q 014560 378 ELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 378 ~~~~~~~~L~~l~l~~n~~~~i 399 (422)
+..+ ++|+.|++++|++...
T Consensus 196 -l~~l-~~L~~L~l~~n~i~~~ 215 (291)
T 1h6t_A 196 -LAGL-KNLDVLELFSQECLNK 215 (291)
T ss_dssp -GTTC-TTCSEEEEEEEEEECC
T ss_pred -hccC-CCCCEEECcCCcccCC
Confidence 3333 6666666666655443
No 98
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.80 E-value=1.8e-20 Score=170.88 Aligned_cols=249 Identities=19% Similarity=0.201 Sum_probs=126.1
Q ss_pred EEccCCcccccc-cccccce-ecEEEcCCCCCCCCC-----ccccccC-CccEEEcCCCccccccccccCCCChHHHHHH
Q 014560 97 LDLHSNQLKEYC-VEACQLR-LSVLDLSNNSLSGLP-----PEIGKMT-TLRKLLLTGNPLRTLRSSLVNGPTPALLKYL 168 (422)
Q Consensus 97 L~l~~~~~~~l~-~~~~~~~-L~~L~l~~~~~~~~~-----~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~ 168 (422)
.+++.+.++... ......+ |++|++++|.+...+ ..+..++ +|++|++++|.++......+
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l----------- 71 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDEL----------- 71 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHH-----------
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHH-----------
Confidence 456666666333 3333333 777777777776643 4456666 67777777776643311110
Q ss_pred HccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc-----ccCC-C
Q 014560 169 RSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-----LSSC-A 242 (422)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-----~~~~-~ 242 (422)
....... .++|++|++++|.++..... +..+ +
T Consensus 72 -------------------~~~l~~~-----------------------~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~ 109 (362)
T 3goz_A 72 -------------------VQILAAI-----------------------PANVTSLNLSGNFLSYKSSDELVKTLAAIPF 109 (362)
T ss_dssp -------------------HHHHHTS-----------------------CTTCCEEECCSSCGGGSCHHHHHHHHHTSCT
T ss_pred -------------------HHHHhcc-----------------------CCCccEEECcCCcCChHHHHHHHHHHHhCCC
Confidence 0000001 14555566665555543221 3333 5
Q ss_pred CCcEEEecCCcCCCCChHHHhc-----CCCCCEEECCCCCCCcCCCCC----CCCCC-CccEEEccCCcCCCCCCCC---
Q 014560 243 SLQTLILSRNKIKDWPDAILTS-----LSSLSCLKLDNNPLRQVPSDG----FKDIP-MLQILDLSYNIASLPENPP--- 309 (422)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~~~~~~~~~----~~~~~-~L~~l~l~~~~~~~~~~~~--- 309 (422)
+|++|++++|.+.......+.. +++|++|++++|.++...... +...+ +|+.|++++|.+++.....
T Consensus 110 ~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 189 (362)
T 3goz_A 110 TITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAK 189 (362)
T ss_dssp TCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred CccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHH
Confidence 5666666666555554433322 245666666665555322211 12222 5666666666555443321
Q ss_pred -CCCC-ccCceEEeCCCcCcc-----CCccccc-CCCCcEEECCCCCCccc-----CccCcCCCCCCEEeCCCCCCc---
Q 014560 310 -FSSL-PHLQELYLRRMQLRE-----APTDILR-LQQLRILDLSQNSLQSI-----PEGFKNLTSLTELDLSDNNIS--- 373 (422)
Q Consensus 310 -~~~~-~~L~~L~l~~~~i~~-----l~~~~~~-~~~L~~l~l~~n~l~~l-----~~~~~~~~~L~~L~l~~n~l~--- 373 (422)
+..+ ++|++|++++|.++. ++..+.. .++|+.|++++|.++.. ...+..+++|+.|++++|.+.
T Consensus 190 ~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~ 269 (362)
T 3goz_A 190 FLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMS 269 (362)
T ss_dssp HHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCC
T ss_pred HHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccC
Confidence 2233 366666666666654 3333433 34666666666666533 233455666666666666532
Q ss_pred -----ccCCccccCCccccEEEccCCCCCcc
Q 014560 374 -----ALPPELGLLEPSLQALRLDGNPLRSI 399 (422)
Q Consensus 374 -----~~~~~~~~~~~~L~~l~l~~n~~~~i 399 (422)
.++..+... ++|++|++++|++...
T Consensus 270 ~~~~~~l~~~~~~l-~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 270 KEQCKALGAAFPNI-QKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHHHTTSTTC-CEEEEECTTSCBCCGG
T ss_pred HHHHHHHHHHhccC-CceEEEecCCCcCCCc
Confidence 222233333 5666666666666544
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.80 E-value=3.1e-19 Score=161.94 Aligned_cols=106 Identities=20% Similarity=0.187 Sum_probs=69.9
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccc-cCC-CCCccCCCCCE-EEcC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRIL-SIP-SSISGCCSLAE-FYMG 77 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~-~l~-~~~~~~~~L~~-L~l~ 77 (422)
++++.++++++.||... .+++++|++++|.|+.++ .+|.++++|++|++++|.+. .+| .+|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCCSCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCCccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 35667777777777653 246777777777777775 35677777777777777764 343 45667776665 4445
Q ss_pred CCcCccC-chhhhCCCCCcEEEccCCcccccccc
Q 014560 78 NNALSAL-PAELGKLSKLGTLDLHSNQLKEYCVE 110 (422)
Q Consensus 78 ~~~i~~l-~~~l~~~~~L~~L~l~~~~~~~l~~~ 110 (422)
+|.+..+ |..|..+++|++|++++|.+..++..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~ 122 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDV 122 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCC
T ss_pred CCcccccCchhhhhccccccccccccccccCCch
Confidence 5677766 45567777777777777776655543
No 100
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.79 E-value=5.4e-19 Score=160.28 Aligned_cols=207 Identities=20% Similarity=0.246 Sum_probs=147.5
Q ss_pred cceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc-ccCCCCCcEEEecCCcCCC-CChHHHhcCCCCCE-EECC
Q 014560 198 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKD-WPDAILTSLSSLSC-LKLD 274 (422)
Q Consensus 198 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~-L~l~ 274 (422)
-+.++.+++.++.+|..+ .+++++|++++|.++.+|+. |.++++|++|++++|.+.+ ++..+|..++++.+ +.+.
T Consensus 11 ~~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 11 NRVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TTEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CCEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 356777777788887765 35788888888888887764 7888888888888887644 66666777777765 4445
Q ss_pred CCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCC-CcCccCCcc-cccC-CCCcEEECCCCCCcc
Q 014560 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRR-MQLREAPTD-ILRL-QQLRILDLSQNSLQS 351 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~i~~l~~~-~~~~-~~L~~l~l~~n~l~~ 351 (422)
.|.+..+++..|..+++|+.+++++|.+.......+....++..+++.+ +.+..++.. +..+ ..++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6778888777788888888888888888776665565666667777755 456655543 3333 357777777777777
Q ss_pred cCccCcCCCCCCEEeCCC-CCCcccCCccccCCccccEEEccCCCCCccchHHHhh
Q 014560 352 IPEGFKNLTSLTELDLSD-NNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDR 406 (422)
Q Consensus 352 l~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~ 406 (422)
++.......+|+.+++.+ |.++.+|...+..+++|++|++++|+++.++...|.+
T Consensus 169 i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~ 224 (350)
T 4ay9_X 169 IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLEN 224 (350)
T ss_dssp ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTT
T ss_pred CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhcc
Confidence 766655566777777764 5677777766555577777777777777777766554
No 101
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.7e-18 Score=143.72 Aligned_cols=177 Identities=27% Similarity=0.387 Sum_probs=133.0
Q ss_pred cceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc-ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCC
Q 014560 198 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 276 (422)
Q Consensus 198 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 276 (422)
-+.+++.++.+..+|..+ .+++++|+++++.++.++.. +..+++|++|++++|.+..++...|..+++|++|++++|
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 356677777777777654 35788888888888776654 677888888888888888877777777888888888888
Q ss_pred CCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCcc
Q 014560 277 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG 355 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~ 355 (422)
.+..+++..+..+++|+.|++++|.+++.....+..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~----- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD----- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-----
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-----
Confidence 88877777777888888888888888777766677788888888888888766655 566788888888888654
Q ss_pred CcCCCCCCEEeCCCCCCc-ccCCccccC
Q 014560 356 FKNLTSLTELDLSDNNIS-ALPPELGLL 382 (422)
Q Consensus 356 ~~~~~~L~~L~l~~n~l~-~~~~~~~~~ 382 (422)
..+++|+.|++..|.++ .+|..+..+
T Consensus 162 -~~~~~l~~L~~~~n~~~g~ip~~~~~l 188 (208)
T 2o6s_A 162 -CTCPGIRYLSEWINKHSGVVRNSAGSV 188 (208)
T ss_dssp -CCTTTTHHHHHHHHHCTTTBBCTTSSB
T ss_pred -cCCCCHHHHHHHHHhCCceeeccCccc
Confidence 24567777777777766 666655544
No 102
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1e-18 Score=168.53 Aligned_cols=138 Identities=21% Similarity=0.324 Sum_probs=67.6
Q ss_pred ccCCcceecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCc
Q 014560 6 VEGNKLTVLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALP 85 (422)
Q Consensus 6 ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~ 85 (422)
++.+.+..+.. +..+++|+.|++++|.+..++ .+..+++|++|++++|.+..++. +..+++|+.|+|++|.+..++
T Consensus 28 l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~ 103 (605)
T 1m9s_A 28 LKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS 103 (605)
T ss_dssp TTCSCTTSEEC--HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT
T ss_pred ccCCCcccccc--hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh
Confidence 33444443333 445555555555555555544 34555555555555555555433 555555555555555555543
Q ss_pred hhhhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCcc
Q 014560 86 AELGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPL 149 (422)
Q Consensus 86 ~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 149 (422)
.+..+++|+.|++++|.+..++.......|+.|++++|.+..+ ..+..+++|+.|++++|.+
T Consensus 104 -~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l 165 (605)
T 1m9s_A 104 -SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQI 165 (605)
T ss_dssp -TSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCC
T ss_pred -hhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcC
Confidence 3555555555555555555443222222244444444444444 3344444444444444443
No 103
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=1.1e-17 Score=142.05 Aligned_cols=151 Identities=33% Similarity=0.451 Sum_probs=112.9
Q ss_pred ccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 221 ITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 221 L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
-+.++.+++.++.+|..+. ++|+.|++++|.+..+.+..+..+++|+.|++++|.+..+++..|..+++|+.|++++|
T Consensus 21 ~~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 21 GTTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 4567777777777776543 67888888888887776666777788888888888887777776777788888888888
Q ss_pred cCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEeCCCCCCc
Q 014560 301 IASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~l~~n~l~ 373 (422)
.++......+..+++|+.|++++|.++.+|..+..+++|+.|++++|.++.++. .+..+++|+.|++++|.+.
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBC
T ss_pred cCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCcc
Confidence 777776666777777777777777777777777777777777777777776653 4677777777777777665
No 104
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.77 E-value=7.2e-18 Score=141.14 Aligned_cols=167 Identities=32% Similarity=0.415 Sum_probs=139.4
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+.++.+++.++.+|..+ .+++++|++++|.+..++...+..+++|++|++++|.+..+++..|..+++|++|++++|.
T Consensus 10 ~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 87 (208)
T 2o6s_A 10 TTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ 87 (208)
T ss_dssp TEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCc
Confidence 56788888888887654 4689999999999998888878889999999999999998888878889999999999999
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCcccCcc-CcCCCCCCEEeCCCCCCcccCCcc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEG-FKNLTSLTELDLSDNNISALPPEL 379 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~ 379 (422)
+++.....+..+++|++|++++|.++.++.. +..+++|+.|++++|.++.++.. +..+++|+.|++++|.+..
T Consensus 88 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~----- 162 (208)
T 2o6s_A 88 LQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC----- 162 (208)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-----
T ss_pred CCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-----
Confidence 9888777788899999999999998877665 57788999999999999877654 7888999999999987652
Q ss_pred ccCCccccEEEccCCCCC
Q 014560 380 GLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 380 ~~~~~~L~~l~l~~n~~~ 397 (422)
.+++++.|+++.|.++
T Consensus 163 --~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 163 --TCPGIRYLSEWINKHS 178 (208)
T ss_dssp --CTTTTHHHHHHHHHCT
T ss_pred --CCCCHHHHHHHHHhCC
Confidence 2267888888777665
No 105
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=2.2e-18 Score=156.86 Aligned_cols=175 Identities=30% Similarity=0.367 Sum_probs=127.6
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh-cCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-SLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
+.++++++.++.+|..+. ..++.|++++|.+..++...+. .+++|+.|++++|.+..+++..|..+++|+.|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 456667777766665443 3567777777777776666565 6777777777777777777766777778888888877
Q ss_pred cCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCcccCccC----cCCCCCCEEeCCCCCCccc
Q 014560 301 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSIPEGF----KNLTSLTELDLSDNNISAL 375 (422)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l~~~~----~~~~~L~~L~l~~n~l~~~ 375 (422)
.+.......|..+++|+.|++++|.+..+ +..+.++++|+.|++++|.++.+|..+ ..+++|+.|++++|.|+.+
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l 178 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL 178 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence 77776666777778888888888888755 445777888888888888888876653 5688899999999988888
Q ss_pred CCccccCCcc--ccEEEccCCCCCc
Q 014560 376 PPELGLLEPS--LQALRLDGNPLRS 398 (422)
Q Consensus 376 ~~~~~~~~~~--L~~l~l~~n~~~~ 398 (422)
+...+...+. ++.|++.+|++..
T Consensus 179 ~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 179 PLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred CHHHhhhccHhhcceEEecCCCccC
Confidence 7544333355 4789999998863
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.77 E-value=3e-18 Score=165.19 Aligned_cols=169 Identities=30% Similarity=0.400 Sum_probs=76.5
Q ss_pred CCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEc
Q 014560 218 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 297 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 297 (422)
+++|+.|++++|.+..++ .+..+++|+.|++++|.+..+++ +..+++|+.|++++|.+..++ .+..+++|+.|++
T Consensus 42 L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~L~L 116 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKSLSL 116 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCEEEC
T ss_pred CCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCEEEe
Confidence 344444444444444443 24444444444444444444433 344444444444444444433 1444444444444
Q ss_pred cCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCC
Q 014560 298 SYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPP 377 (422)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~ 377 (422)
++|.+.+. ..+..+++|+.|++++|.+..+ ..+..+++|+.|++++|.++.++. +..+++|+.|+|++|.|+.++
T Consensus 117 s~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~i~~l~- 191 (605)
T 1m9s_A 117 EHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNLYLSKNHISDLR- 191 (605)
T ss_dssp TTSCCCCC--GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCBCG-
T ss_pred cCCCCCCC--ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCcCCCchh-hccCCCCCEEECcCCCCCCCh-
Confidence 44444432 2244444444455544444444 234444445555555444444433 444444555555544444432
Q ss_pred ccccCCccccEEEccCCCCC
Q 014560 378 ELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 378 ~~~~~~~~L~~l~l~~n~~~ 397 (422)
.+..+ ++|+.|++++|++.
T Consensus 192 ~l~~l-~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 192 ALAGL-KNLDVLELFSQECL 210 (605)
T ss_dssp GGTTC-TTCSEEECCSEEEE
T ss_pred HHccC-CCCCEEEccCCcCc
Confidence 22222 44455554444443
No 107
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=4.4e-18 Score=147.57 Aligned_cols=172 Identities=22% Similarity=0.241 Sum_probs=132.7
Q ss_pred hcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCCCCCcEEEcc
Q 014560 21 SWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKLSKLGTLDLH 100 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~~L~~L~l~ 100 (422)
++.++..++++++.++.++ .+..+++|++|++++|.++.++ .+..+++|++|++++|.++.++. +..+++|++|+++
T Consensus 17 ~l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 17 GLANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECC
T ss_pred HHHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECC
Confidence 5677888899999998877 6788999999999999999887 68889999999999999998876 8999999999999
Q ss_pred CCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccc
Q 014560 101 SNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEA 180 (422)
Q Consensus 101 ~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 180 (422)
+|.++.++.... .+|+.|++++|.++.++ .+..+++|+.|++++|.++.+
T Consensus 94 ~N~l~~l~~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~---------------------------- 143 (263)
T 1xeu_A 94 RNRLKNLNGIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSI---------------------------- 143 (263)
T ss_dssp SSCCSCCTTCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBC----------------------------
T ss_pred CCccCCcCcccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCC----------------------------
Confidence 999888766544 45888888888777764 477777777777777766432
Q ss_pred cchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC
Q 014560 181 STTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258 (422)
Q Consensus 181 ~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (422)
..+..+++|+.|++++|.++.+ ..+..+++|+.|++++|.+...+
T Consensus 144 --------------------------------~~l~~l~~L~~L~L~~N~i~~~-~~l~~l~~L~~L~l~~N~~~~~~ 188 (263)
T 1xeu_A 144 --------------------------------VMLGFLSKLEVLDLHGNEITNT-GGLTRLKKVNWIDLTGQKCVNEP 188 (263)
T ss_dssp --------------------------------GGGGGCTTCCEEECTTSCCCBC-TTSTTCCCCCEEEEEEEEEECCC
T ss_pred --------------------------------hHHccCCCCCEEECCCCcCcch-HHhccCCCCCEEeCCCCcccCCc
Confidence 1233456677777777777666 45667777777777777665553
No 108
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=2.4e-17 Score=138.89 Aligned_cols=150 Identities=24% Similarity=0.412 Sum_probs=82.3
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+.++++++.++.+|..+. ++++.|++++|.+..+++..|..+++|+.|++++|.+..+.+..|..+
T Consensus 14 ~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l------------ 79 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGL------------ 79 (220)
T ss_dssp TEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTC------------
T ss_pred CEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCC------------
Confidence 455666666666655433 455666666555555554444555555555555555555444444444
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCcc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPEL 379 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~ 379 (422)
++|++|++++|.++.++.. +.++++|+.|++++|.++.+ +..|..+++|+.|++++|.|+.++...
T Consensus 80 ------------~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 147 (220)
T 2v9t_B 80 ------------RSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147 (220)
T ss_dssp ------------SSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ------------cCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHH
Confidence 4555555555555544443 34455556666666655544 344556666666666666666555543
Q ss_pred ccCCccccEEEccCCCCC
Q 014560 380 GLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 380 ~~~~~~L~~l~l~~n~~~ 397 (422)
+..+++|+.|++++|++.
T Consensus 148 ~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 148 FSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTCTTCCEEECCSSCEE
T ss_pred HhCCCCCCEEEeCCCCcC
Confidence 333366666666666654
No 109
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.76 E-value=2.4e-18 Score=149.17 Aligned_cols=171 Identities=22% Similarity=0.294 Sum_probs=140.4
Q ss_pred ccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCC
Q 014560 197 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 276 (422)
Q Consensus 197 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 276 (422)
.+..+.+.++.+..++ .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.+.++++ +..+++|+.|++++|
T Consensus 20 ~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N 95 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRN 95 (263)
T ss_dssp HHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSS
T ss_pred HHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCC
Confidence 4556667777777666 4566789999999999998887 68888999999999999988876 788999999999999
Q ss_pred CCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccC
Q 014560 277 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGF 356 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~ 356 (422)
.+..++.. .. ++|+.|++++|.+++.. .+..+++|+.|++++|.++.++ .+..+++|+.|++++|.++.+ ..+
T Consensus 96 ~l~~l~~~--~~-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-~~l 168 (263)
T 1xeu_A 96 RLKNLNGI--PS-ACLSRLFLDNNELRDTD--SLIHLKNLEILSIRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-GGL 168 (263)
T ss_dssp CCSCCTTC--CC-SSCCEEECCSSCCSBSG--GGTTCTTCCEEECTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-TTS
T ss_pred ccCCcCcc--cc-CcccEEEccCCccCCCh--hhcCcccccEEECCCCcCCCCh-HHccCCCCCEEECCCCcCcch-HHh
Confidence 98887653 33 88999999999888753 4788889999999999988875 577889999999999999887 668
Q ss_pred cCCCCCCEEeCCCCCCcccCCc
Q 014560 357 KNLTSLTELDLSDNNISALPPE 378 (422)
Q Consensus 357 ~~~~~L~~L~l~~n~l~~~~~~ 378 (422)
..+++|+.|++++|.++..|..
T Consensus 169 ~~l~~L~~L~l~~N~~~~~~~~ 190 (263)
T 1xeu_A 169 TRLKKVNWIDLTGQKCVNEPVK 190 (263)
T ss_dssp TTCCCCCEEEEEEEEEECCCEE
T ss_pred ccCCCCCEEeCCCCcccCCccc
Confidence 8888999999999988765543
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=3.3e-17 Score=139.04 Aligned_cols=155 Identities=28% Similarity=0.282 Sum_probs=139.0
Q ss_pred CCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeC
Q 014560 243 SLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLR 322 (422)
Q Consensus 243 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 322 (422)
.-+.++.+++.+..++... .++|+.|++++|.+..+.+..|..+++|+.|++++|.+.......+..+++|+.|+++
T Consensus 20 s~~~v~c~~~~l~~ip~~~---~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 20 SGTTVDCRSKRHASVPAGI---PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp ETTEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred eCCEeEccCCCcCccCCCC---CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECC
Confidence 4667899998898888643 4899999999999999988889999999999999999988888888999999999999
Q ss_pred CCcCccCCcc-cccCCCCcEEECCCCCCcccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccc
Q 014560 323 RMQLREAPTD-ILRLQQLRILDLSQNSLQSIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 323 ~~~i~~l~~~-~~~~~~L~~l~l~~n~l~~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
+|.++.++.. +..+++|+.|++++|.++.+|..+..+++|+.|++++|.|+.++...+..+++|+.|++++|++..-.
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred CCcCCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 9999988765 57899999999999999999999999999999999999999998776655599999999999987543
No 111
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.75 E-value=3.3e-18 Score=141.82 Aligned_cols=150 Identities=17% Similarity=0.251 Sum_probs=82.3
Q ss_pred CCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEc
Q 014560 218 AGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDL 297 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l 297 (422)
+++++.|+++++.+..++ .+..+++|++|++++|.+...+ . +..+++|+.|++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~--~------------------------l~~l~~L~~L~l 95 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN--P------------------------ISGLSNLERLRI 95 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG--G------------------------GTTCTTCCEEEE
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch--h------------------------hhcCCCCCEEEe
Confidence 345555555555555444 3445555555555555433332 2 444445555555
Q ss_pred cCCcCCCCCCCCCCCCccCceEEeCCCcCcc-CCcccccCCCCcEEECCCCC-CcccCccCcCCCCCCEEeCCCCCCccc
Q 014560 298 SYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRILDLSQNS-LQSIPEGFKNLTSLTELDLSDNNISAL 375 (422)
Q Consensus 298 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~l~l~~n~-l~~l~~~~~~~~~L~~L~l~~n~l~~~ 375 (422)
++|.+.+..+..+..+++|+.|++++|.++. .+..+..+++|+.|++++|. ++.++ .+..+++|+.|++++|.++.+
T Consensus 96 ~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~ 174 (197)
T 4ezg_A 96 MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDY 174 (197)
T ss_dssp ECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCC
T ss_pred ECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcCh
Confidence 5554444333445555566666666665553 44445566666666666665 66655 466666777777777766665
Q ss_pred CCccccCCccccEEEccCCCCC
Q 014560 376 PPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 376 ~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
+ .+..+ ++|++|++++|++.
T Consensus 175 ~-~l~~l-~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 175 R-GIEDF-PKLNQLYAFSQTIG 194 (197)
T ss_dssp T-TGGGC-SSCCEEEECBC---
T ss_pred H-HhccC-CCCCEEEeeCcccC
Confidence 5 44444 66777777776654
No 112
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.75 E-value=2.5e-17 Score=138.83 Aligned_cols=152 Identities=26% Similarity=0.395 Sum_probs=136.4
Q ss_pred ccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 197 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 197 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
.-+.+++.++.+..+|..+. ++++.|++++|.++.+++ .|..+++|+.|++++|.+..+.+..|..+++|+.|++++
T Consensus 12 ~~~~v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~ 89 (220)
T 2v9t_B 12 SNNIVDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89 (220)
T ss_dssp ETTEEECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCS
T ss_pred CCCEEEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCC
Confidence 34678889999999988664 689999999999998766 588999999999999999998888899999999999999
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCc
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~ 350 (422)
|.+..+++..|..+++|+.|++++|.+.+..+..+..+++|+.|++++|.++.++.. +..+++|+.+++++|.+.
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 90 NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 999999998889999999999999999998888899999999999999999977664 677889999999999876
No 113
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.74 E-value=8.2e-17 Score=148.40 Aligned_cols=322 Identities=14% Similarity=0.162 Sum_probs=181.1
Q ss_pred ceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCccC-chh
Q 014560 11 LTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAE 87 (422)
Q Consensus 11 i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~l-~~~ 87 (422)
++.|+..||.+|.+|+.+.+.. .++.++ .+|.+|.+|+.+++.++ ++.+ ..+|.+|..|+.+.+..+ +..+ ..+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a 135 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA 135 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence 4566777777777777777753 355553 55667777777777544 4434 345666666666655543 2222 233
Q ss_pred hhCCCCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHH
Q 014560 88 LGKLSKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKY 167 (422)
Q Consensus 88 l~~~~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~ 167 (422)
|..+..++...... ...+ ...+|..|++|+.+.+..+ +..++...+.+
T Consensus 136 F~~~~~~~~~~~~~--~~~i---------------------~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~-------- 183 (394)
T 4fs7_A 136 FKGCDFKEITIPEG--VTVI---------------------GDEAFATCESLEYVSLPDS-METLHNGLFSG-------- 183 (394)
T ss_dssp TTTCCCSEEECCTT--CCEE---------------------CTTTTTTCTTCCEEECCTT-CCEECTTTTTT--------
T ss_pred eecccccccccCcc--cccc---------------------chhhhcccCCCcEEecCCc-cceeccccccC--------
Confidence 44433222221111 1111 1224555566666655432 22333333221
Q ss_pred HHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCc-ccccCCCccEEeCCCCccccCCccccCCCCCcE
Q 014560 168 LRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPS-EIWEAGEITKLDLSRNSIQELPPELSSCASLQT 246 (422)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~ 246 (422)
+..++.+.+..+ +..+.. .+..+..|+.+.+..+.. .+...+..+.+|+.
T Consensus 184 ---------------------------c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~-~i~~~~~~~~~l~~ 234 (394)
T 4fs7_A 184 ---------------------------CGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLY-YLGDFALSKTGVKN 234 (394)
T ss_dssp ---------------------------CTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCC-EECTTTTTTCCCCE
T ss_pred ---------------------------CCCceEEEcCCC-ceEeCchhhccccccceeecCCCce-EeehhhcccCCCce
Confidence 123444444332 222222 223345566555554322 22233344567777
Q ss_pred EEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcC
Q 014560 247 LILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 326 (422)
Q Consensus 247 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 326 (422)
+.+... +..+...++..+..++.+.+..+ ...+....|..+..++.+......+ ....+..+.+|+.+.+..+ +
T Consensus 235 i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i 308 (394)
T 4fs7_A 235 IIIPDS-FTELGKSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V 308 (394)
T ss_dssp EEECTT-CCEECSSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C
T ss_pred EEECCC-ceecccccccccccceeEEcCCC-cceeeccccccccccceeccCceee---ccccccccccccccccccc-c
Confidence 777643 44555556677778888877654 3456666677778887777765433 2345677778888877654 4
Q ss_pred ccCC-cccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHH
Q 014560 327 REAP-TDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTIL 404 (422)
Q Consensus 327 ~~l~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~ 404 (422)
+.++ .+|.+|++|+.+++.. .++.+ ..+|.+|++|+.+++..+ ++.|....+..|.+|+.+++.++ +..+. ..|
T Consensus 309 ~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~-~~F 384 (394)
T 4fs7_A 309 KFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYR-YDF 384 (394)
T ss_dssp CEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGG-GGB
T ss_pred ceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhh-hee
Confidence 4443 3466788888888864 36666 345888888888888765 77777777777788888888764 33332 344
Q ss_pred hh
Q 014560 405 DR 406 (422)
Q Consensus 405 ~~ 406 (422)
..
T Consensus 385 ~~ 386 (394)
T 4fs7_A 385 ED 386 (394)
T ss_dssp CT
T ss_pred cC
Confidence 44
No 114
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.74 E-value=2.6e-17 Score=138.73 Aligned_cols=148 Identities=25% Similarity=0.306 Sum_probs=63.0
Q ss_pred eeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc--cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCC
Q 014560 200 ELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP--ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 277 (422)
Q Consensus 200 ~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (422)
.++++++.+..+|..+. ..+++|++++|.++.+++ .|..+++|+.|++++|.+..+++..|..+++|+.|++++|.
T Consensus 15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~ 92 (220)
T 2v70_A 15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNR 92 (220)
T ss_dssp EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCc
Confidence 44444444444444332 233444444444444321 13444444444444444444444334444444444444444
Q ss_pred CCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCC
Q 014560 278 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSL 349 (422)
Q Consensus 278 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l 349 (422)
+..+++..|..+++|++|++++|.+.+..+..+..+++|+.|++++|.++.+ |..+..+++|+.|++++|.+
T Consensus 93 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 93 LENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp CCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred cCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 4444443344444444444444444444333344444444444444444433 22333344444444444433
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.74 E-value=9.2e-18 Score=139.11 Aligned_cols=132 Identities=23% Similarity=0.345 Sum_probs=109.0
Q ss_pred hcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCcc-CCcccccCCCCcE
Q 014560 263 TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 341 (422)
Q Consensus 263 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~ 341 (422)
..+++|+.|+++++.+..++ .+..+++|+.|++++|.+... ..+..+++|++|++++|.++. .+..+..+++|+.
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT--GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT--TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCccChH--HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 44567777777777777665 367778888888888855543 357889999999999999985 6777889999999
Q ss_pred EECCCCCCcc-cCccCcCCCCCCEEeCCCCC-CcccCCccccCCccccEEEccCCCCCccc
Q 014560 342 LDLSQNSLQS-IPEGFKNLTSLTELDLSDNN-ISALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 342 l~l~~n~l~~-l~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
|++++|.++. .+..+..+++|+.|++++|. ++.++ .+..+ ++|+.|++++|++++++
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l-~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTL-PELKSLNIQFDGVHDYR 175 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGC-SSCCEEECTTBCCCCCT
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCC-CCCCEEECCCCCCcChH
Confidence 9999999995 56778999999999999998 88886 56666 99999999999998876
No 116
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=1.8e-17 Score=149.04 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=60.1
Q ss_pred CCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCcc-EEEccCCcCCCCCCCCCCCCccCceE
Q 014560 241 CASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQ-ILDLSYNIASLPENPPFSSLPHLQEL 319 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~L 319 (422)
+++|+.+++++|.+..++..+|..|.+|+.+++..+ +..++..+|.+|++|+ .+++++ .++.+....|..|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 556666666665566666666666666666666554 5556666666666666 666655 4555555556666666666
Q ss_pred EeCCCcCccCCc-ccccCCCCcEEE
Q 014560 320 YLRRMQLREAPT-DILRLQQLRILD 343 (422)
Q Consensus 320 ~l~~~~i~~l~~-~~~~~~~L~~l~ 343 (422)
++.++.++.++. +|.+|++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 666666665544 355666666654
No 117
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.74 E-value=1.4e-17 Score=151.55 Aligned_cols=175 Identities=28% Similarity=0.424 Sum_probs=153.6
Q ss_pred ccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc-cc-CCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECC
Q 014560 197 TSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE-LS-SCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLD 274 (422)
Q Consensus 197 ~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 274 (422)
..+.+++.++.+..+|..+. ..++.|++++|.++.++.. +. .+++|+.|++++|.+..+++..|..+++|+.|+++
T Consensus 19 ~~~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 19 ASNILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp ETTEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 34678899999999987654 4689999999999987654 66 89999999999999999988888999999999999
Q ss_pred CCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCccc----ccCCCCcEEECCCCCCc
Q 014560 275 NNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI----LRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~----~~~~~L~~l~l~~n~l~ 350 (422)
+|.+..+++..|..+++|+.|++++|.+....+..|..+++|+.|++++|.++.+|... ..+++|+.|++++|.++
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 99999999888999999999999999999888888999999999999999999988775 46899999999999999
Q ss_pred ccCc-cCcCCCC--CCEEeCCCCCCc
Q 014560 351 SIPE-GFKNLTS--LTELDLSDNNIS 373 (422)
Q Consensus 351 ~l~~-~~~~~~~--L~~L~l~~n~l~ 373 (422)
.+|. .+..++. ++.|++++|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 8874 4666666 488999999764
No 118
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.72 E-value=2.4e-16 Score=144.61 Aligned_cols=262 Identities=12% Similarity=0.181 Sum_probs=168.6
Q ss_pred HhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCccC-chhhhCCCCCc
Q 014560 19 IASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSAL-PAELGKLSKLG 95 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~l-~~~l~~~~~L~ 95 (422)
+..+..++.+.+.+ .++.++ .+|.++ +|+.+.+..+ ++.+ ..+|.++ +|+.+.+.+ .+..+ +.+|.++++|+
T Consensus 109 ~~~~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 109 TEILKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLK 183 (401)
T ss_dssp EEECSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCC
T ss_pred EEecCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCC
Confidence 44556777777765 455553 566665 7888888766 6655 4567665 688888886 56655 35688888899
Q ss_pred EEEccCCcccccccccccce-ecEEEcCCCCCCC-CCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCC
Q 014560 96 TLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 173 (422)
Q Consensus 96 ~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (422)
.++++.|.++.++...+... |+.+.+..+ +.. -..+|..|++|+.+++..+ ++.++...
T Consensus 184 ~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~a----------------- 244 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEA----------------- 244 (401)
T ss_dssp EEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTT-----------------
T ss_pred eeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccc-----------------
Confidence 99888888887777665544 777777643 444 3345777778887777653 33332222
Q ss_pred CCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCc-cccCCCCCcEEEecCC
Q 014560 174 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPP-ELSSCASLQTLILSRN 252 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~-~~~~~~~L~~L~l~~~ 252 (422)
+...+|+.+.+.+ .++.++. .|.+|++|+.+.+.++
T Consensus 245 ------------------------------------------F~~~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~ 281 (401)
T 4fdw_A 245 ------------------------------------------FRESGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGS 281 (401)
T ss_dssp ------------------------------------------TTTCCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESS
T ss_pred ------------------------------------------cccCCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCc
Confidence 2224566666633 4445433 4777888888888776
Q ss_pred cCC-----CCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc
Q 014560 253 KIK-----DWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 327 (422)
Q Consensus 253 ~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (422)
.+. .++..+|..|++|+.+.+.. .+..++..+|.+|++|+.+.+..+ +..+....|..| +|+.+++.++.+.
T Consensus 282 ~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~ 358 (401)
T 4fdw_A 282 TFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP 358 (401)
T ss_dssp CCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred cccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence 544 46666777777777777773 466777777777777777777554 555555566666 7777777777666
Q ss_pred cCCcc-cccCC-CCcEEECCCCCCc
Q 014560 328 EAPTD-ILRLQ-QLRILDLSQNSLQ 350 (422)
Q Consensus 328 ~l~~~-~~~~~-~L~~l~l~~n~l~ 350 (422)
.++.. +.+++ .++.+++..+.+.
T Consensus 359 ~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 359 QVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp BCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred ccccccccCCCCCccEEEeCHHHHH
Confidence 54433 44443 5666666655443
No 119
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.71 E-value=1e-16 Score=135.06 Aligned_cols=150 Identities=23% Similarity=0.380 Sum_probs=135.6
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC-hHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP-DAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
+.++++++.++.+|..+. ..+++|++++|.+..++ ...|..+++|+.|++++|.+..+++..|..+++|+.|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 589999999999987654 46799999999999874 456789999999999999999999888999999999999999
Q ss_pred cCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCc
Q 014560 301 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~ 373 (422)
.+.+..+..+..+++|++|++++|.++.+ +..+.++++|+.|++++|.++.+ |..|..+++|+.|++++|.+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 99998888899999999999999999976 56688999999999999999987 778999999999999999875
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=5.2e-17 Score=145.95 Aligned_cols=123 Identities=14% Similarity=0.163 Sum_probs=83.2
Q ss_pred CCCCcEEEecCCcCCCCChHHH-hcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCc-e
Q 014560 241 CASLQTLILSRNKIKDWPDAIL-TSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQ-E 318 (422)
Q Consensus 241 ~~~L~~L~l~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~-~ 318 (422)
..++..+.+.+. +.......+ ..+++|+.+++++|.+..++..+|.+|++|+.++++++ +..+....|..|++|+ .
T Consensus 201 ~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~ 278 (329)
T 3sb4_A 201 PRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGT 278 (329)
T ss_dssp GGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEE
T ss_pred ccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEE
Confidence 456666776654 222111112 24788999999988888888888888888888888876 6666666777777777 7
Q ss_pred EEeCCCcCccCC-cccccCCCCcEEECCCCCCcccCc-cCcCCCCCCEEe
Q 014560 319 LYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSIPE-GFKNLTSLTELD 366 (422)
Q Consensus 319 L~l~~~~i~~l~-~~~~~~~~L~~l~l~~n~l~~l~~-~~~~~~~L~~L~ 366 (422)
+++.+ .++.++ .+|.+|++|+.+++++|.++.++. +|.+|++|+.+.
T Consensus 279 l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 279 LELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 77776 555443 346666677777766666666643 466666666654
No 121
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.71 E-value=3.7e-16 Score=144.05 Aligned_cols=313 Identities=12% Similarity=0.142 Sum_probs=173.9
Q ss_pred CceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCC
Q 014560 1 MSKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGN 78 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~ 78 (422)
|+++.|.. .+..|+..+|.+|.+|+.+++.++ ++.++ .+|.+|.+|+.+.+..+ +..+ ..+|.++.. ..+.+..
T Consensus 73 L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~-~~~~~~~ 148 (394)
T 4fs7_A 73 VTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDF-KEITIPE 148 (394)
T ss_dssp EEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCC-SEEECCT
T ss_pred ceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccc-cccccCc
Confidence 45677763 588999999999999999999765 66664 67899999999988765 3433 456777754 3343333
Q ss_pred CcCccCchhhhCCCCCcEEEccCCcccccccccccc--eecEEEcCCCCCCC-CCccccccCCccEEEcCCCcccccccc
Q 014560 79 NALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLLTGNPLRTLRSS 155 (422)
Q Consensus 79 ~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~ 155 (422)
.....-..+|.++++|+.+.+.++. ..+....+.. .|+.+.+..+ ++. ...++..+..|+.+.+..+.
T Consensus 149 ~~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~------- 219 (394)
T 4fs7_A 149 GVTVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL------- 219 (394)
T ss_dssp TCCEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC-------
T ss_pred cccccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc-------
Confidence 2222224568888999999886542 3333332221 1444444333 111 12234444444444333221
Q ss_pred ccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCC
Q 014560 156 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELP 235 (422)
Q Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~ 235 (422)
..+....+...+++.+.+... +..+.
T Consensus 220 -----------------------------------------------------~~i~~~~~~~~~l~~i~ip~~-~~~i~ 245 (394)
T 4fs7_A 220 -----------------------------------------------------YYLGDFALSKTGVKNIIIPDS-FTELG 245 (394)
T ss_dssp -----------------------------------------------------CEECTTTTTTCCCCEEEECTT-CCEEC
T ss_pred -----------------------------------------------------eEeehhhcccCCCceEEECCC-ceecc
Confidence 111112223345555555432 22222
Q ss_pred -ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCc
Q 014560 236 -PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLP 314 (422)
Q Consensus 236 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~ 314 (422)
..|..+..++.+.+..+ ...+....|..+..++.+..... .++...|..+.+|+.+.+.++ +..+....|..|.
T Consensus 246 ~~~f~~~~~l~~~~~~~~-~~~i~~~~F~~~~~l~~~~~~~~---~i~~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~ 320 (394)
T 4fs7_A 246 KSVFYGCTDLESISIQNN-KLRIGGSLFYNCSGLKKVIYGSV---IVPEKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT 320 (394)
T ss_dssp SSTTTTCSSCCEEEECCT-TCEECSCTTTTCTTCCEEEECSS---EECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred cccccccccceeEEcCCC-cceeeccccccccccceeccCce---eeccccccccccccccccccc-cceechhhhcCCC
Confidence 23556666666666553 33344444566666666655432 234444666666666666543 4444455566666
Q ss_pred cCceEEeCCCcCccCC-cccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccCCccccCCccccEE
Q 014560 315 HLQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQAL 389 (422)
Q Consensus 315 ~L~~L~l~~~~i~~l~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l 389 (422)
+|+.+++..+ ++.+. .+|.+|.+|+.+++..+ ++.+ ..+|.+|++|+.+++..+ ++.+... +..|++|+.+
T Consensus 321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~-F~~c~~L~~I 393 (394)
T 4fs7_A 321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYD-FEDTTKFKWI 393 (394)
T ss_dssp TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGG-BCTTCEEEEE
T ss_pred CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhhe-ecCCCCCcEE
Confidence 6776666543 44443 34666777777777655 5555 335777777777777543 3333322 3333666554
No 122
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1e-15 Score=140.35 Aligned_cols=259 Identities=14% Similarity=0.171 Sum_probs=176.4
Q ss_pred CCCCCEEEcCCCcCccCc-hhhhCCCCCcEEEccCCcccccccccccc-eecEEEcCCCCCCC-CCccccccCCccEEEc
Q 014560 68 CCSLAEFYMGNNALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQL-RLSVLDLSNNSLSG-LPPEIGKMTTLRKLLL 144 (422)
Q Consensus 68 ~~~L~~L~l~~~~i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~~-~L~~L~l~~~~~~~-~~~~~~~l~~L~~L~l 144 (422)
+..++.+.+.++ ++.++ .+|.++ +|+.+.+..+ ++.+....+.. .|+.+.+.. .+.. -..+|..|++|+.+++
T Consensus 112 ~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 112 LKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNSTVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp CSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTCCCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred cCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCCCceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 455555555543 33332 334443 5666666544 44444433332 255555554 3333 2235666777777777
Q ss_pred CCCccccccccccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEE
Q 014560 145 TGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKL 224 (422)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L 224 (422)
..|.++.++ ...+...+|+.+
T Consensus 188 ~~n~l~~I~-----------------------------------------------------------~~aF~~~~L~~l 208 (401)
T 4fdw_A 188 SKTKITKLP-----------------------------------------------------------ASTFVYAGIEEV 208 (401)
T ss_dssp TTSCCSEEC-----------------------------------------------------------TTTTTTCCCSEE
T ss_pred CCCcceEec-----------------------------------------------------------hhhEeecccCEE
Confidence 666555443 333334567777
Q ss_pred eCCCCccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCC
Q 014560 225 DLSRNSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIAS 303 (422)
Q Consensus 225 ~l~~~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~ 303 (422)
.+.. .+..++. .|.+|++|+.+.+.. ++..+...+|.. .+|+.+.+. +.+..++..+|.+|++|+.+.+.++.+.
T Consensus 209 ~lp~-~l~~I~~~aF~~~~~L~~l~l~~-~l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~ 284 (401)
T 4fdw_A 209 LLPV-TLKEIGSQAFLKTSQLKTIEIPE-NVSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFN 284 (401)
T ss_dssp ECCT-TCCEECTTTTTTCTTCCCEECCT-TCCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCC
T ss_pred EeCC-chheehhhHhhCCCCCCEEecCC-CccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcccc
Confidence 7774 3555544 488888999999887 467777777777 689999985 4577888888999999999999887654
Q ss_pred -----CCCCCCCCCCccCceEEeCCCcCccCCc-ccccCCCCcEEECCCCCCccc-CccCcCCCCCCEEeCCCCCCcccC
Q 014560 304 -----LPENPPFSSLPHLQELYLRRMQLREAPT-DILRLQQLRILDLSQNSLQSI-PEGFKNLTSLTELDLSDNNISALP 376 (422)
Q Consensus 304 -----~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~~L~~L~l~~n~l~~~~ 376 (422)
.+....|..|++|+.+.+.+ .++.++. +|.+|++|+.+.+..+ ++.+ ..+|.+| +|+.+++.+|.+..++
T Consensus 285 ~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~ 361 (401)
T 4fdw_A 285 DDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVF 361 (401)
T ss_dssp CCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCC
T ss_pred CCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccc
Confidence 45567788999999999984 4665544 4778899999999654 7766 4568999 9999999999988888
Q ss_pred CccccCC-ccccEEEccCCCC
Q 014560 377 PELGLLE-PSLQALRLDGNPL 396 (422)
Q Consensus 377 ~~~~~~~-~~L~~l~l~~n~~ 396 (422)
...+..+ ..++.+++..+.+
T Consensus 362 ~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 362 EKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CSSCCCSCTTCCEEEECGGGH
T ss_pred cccccCCCCCccEEEeCHHHH
Confidence 7777665 4788898887653
No 123
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.70 E-value=1.7e-15 Score=139.60 Aligned_cols=133 Identities=11% Similarity=0.257 Sum_probs=87.5
Q ss_pred ceecChhHHhhcc-cccceecccccccCC-chhhhccccCCeEeccCCc---cccC-CCCCccCCCCCEEEcCCCcCccC
Q 014560 11 LTVLSNNLIASWT-MLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNR---ILSI-PSSISGCCSLAEFYMGNNALSAL 84 (422)
Q Consensus 11 i~~i~~~~~~~~~-~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~---~~~l-~~~~~~~~~L~~L~l~~~~i~~l 84 (422)
++.|+..+|.++. .|+.+.+.. .++.+ ..+|.+|.+|+.+.+..+. ++.+ ..+|.+|..|+.+.+..+ +..+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~-svt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPD-TVTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECT-TCCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECC-CeeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 5678888898885 588888875 36666 4678889999999887653 5555 457888888888877665 4444
Q ss_pred -chhhhCCCCCcEEEccCCcccccccccccc--eecEEEcCCCCCCCCCccccccCCccEEEcCCC
Q 014560 85 -PAELGKLSKLGTLDLHSNQLKEYCVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGN 147 (422)
Q Consensus 85 -~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~--~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~ 147 (422)
...|..+.+|+.+.+..+ +..+....+.. .|+.+.+..+ +..+........+|+.+.+...
T Consensus 129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~ 192 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAK 192 (394)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTT
T ss_pred hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCc
Confidence 345778888888888643 34444433332 2777777654 3333333223466777776543
No 124
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.66 E-value=7e-18 Score=161.69 Aligned_cols=193 Identities=23% Similarity=0.247 Sum_probs=122.0
Q ss_pred hhcccccceecccccccCCchhhhccccCCeEeccCCc-------------cc-cCCCCCccCCCCCEEE-cCCCcCccC
Q 014560 20 ASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNR-------------IL-SIPSSISGCCSLAEFY-MGNNALSAL 84 (422)
Q Consensus 20 ~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~-------------~~-~l~~~~~~~~~L~~L~-l~~~~i~~l 84 (422)
..++.|+.|++++|.++.+|..+.++++|+.|++++|. .. ..|..++++++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 34555666666666666666666666666666654442 11 2234455555566555 444333222
Q ss_pred ch------hhhC--CCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCcccccccc
Q 014560 85 PA------ELGK--LSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSS 155 (422)
Q Consensus 85 ~~------~l~~--~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 155 (422)
+. .+.. ...|+.|++++|.++.+|. +.... |+.|++++|.++.+|..++.+++|+.|++++|.++.+
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l--- 501 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--- 501 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC---
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCC---
Confidence 11 1111 1257777777777777765 44443 7778888888888888888888888888888876432
Q ss_pred ccCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccC-
Q 014560 156 LVNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL- 234 (422)
Q Consensus 156 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~- 234 (422)
| .+..+++|+.|++++|.++.+
T Consensus 502 --------------------------------------------------------p-~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 502 --------------------------------------------------------D-GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp --------------------------------------------------------G-GGTTCSSCCEEECCSSCCCSSS
T ss_pred --------------------------------------------------------c-ccCCCCCCcEEECCCCCCCCCC
Confidence 2 344566788888888888776
Q ss_pred -CccccCCCCCcEEEecCCcCCCCCh---HHHhcCCCCCEEEC
Q 014560 235 -PPELSSCASLQTLILSRNKIKDWPD---AILTSLSSLSCLKL 273 (422)
Q Consensus 235 -~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l 273 (422)
|..+..+++|+.|++++|.+...++ ..+..+++|+.|++
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6778888888888888887776544 23445788887753
No 125
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=2e-18 Score=165.48 Aligned_cols=180 Identities=23% Similarity=0.278 Sum_probs=110.6
Q ss_pred hccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCc-------------Cc-cCchhhhCCCCCcEEE-ccCCccccc
Q 014560 43 GSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNA-------------LS-ALPAELGKLSKLGTLD-LHSNQLKEY 107 (422)
Q Consensus 43 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~-------------i~-~l~~~l~~~~~L~~L~-l~~~~~~~l 107 (422)
..+++|+.|++++|.++.+|+.++++++|++|+++++. .. ..|..+..+++|+.|+ ++.+.+..+
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L 425 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 425 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence 56889999999999999999999999999999997764 22 4466778888888888 666654433
Q ss_pred cccc---------ccceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccc
Q 014560 108 CVEA---------CQLRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDS 178 (422)
Q Consensus 108 ~~~~---------~~~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 178 (422)
+... ....|+.|++++|.++.+|. +..+++|+.|++++|.++
T Consensus 426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~---------------------------- 476 (567)
T 1dce_A 426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLR---------------------------- 476 (567)
T ss_dssp HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCC----------------------------
T ss_pred hhhhhhcccccccCccCceEEEecCCCCCCCcC-ccccccCcEeecCccccc----------------------------
Confidence 3211 01125555555555555544 555555555555554432
Q ss_pred cccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCC
Q 014560 179 EASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWP 258 (422)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~ 258 (422)
.+|..+..+++|+.|++++|.++.+| .+..+++|+.|++++|.+....
T Consensus 477 -------------------------------~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N~l~~~~ 524 (567)
T 1dce_A 477 -------------------------------ALPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNNRLQQSA 524 (567)
T ss_dssp -------------------------------CCCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSSCCCSSS
T ss_pred -------------------------------ccchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCCCCCCCCC
Confidence 22333444555666666666555554 4555556666666665555553
Q ss_pred -hHHHhcCCCCCEEECCCCCCCcCCC
Q 014560 259 -DAILTSLSSLSCLKLDNNPLRQVPS 283 (422)
Q Consensus 259 -~~~~~~~~~L~~L~l~~~~~~~~~~ 283 (422)
+..+..+++|+.|++++|.++..++
T Consensus 525 ~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 525 AIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp TTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 3344555555555555555555443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=7.4e-16 Score=124.16 Aligned_cols=132 Identities=21% Similarity=0.192 Sum_probs=113.5
Q ss_pred cccccceeccccccc--CCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCcc-CchhhhCCCCCcEEE
Q 014560 22 WTMLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTLD 98 (422)
Q Consensus 22 ~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~-l~~~l~~~~~L~~L~ 98 (422)
.++|++|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 378999999999997 7888888999999999999998887 778899999999999999987 777788899999999
Q ss_pred ccCCcccccc--cccccce-ecEEEcCCCCCCCCCc----cccccCCccEEEcCCCccccccc
Q 014560 99 LHSNQLKEYC--VEACQLR-LSVLDLSNNSLSGLPP----EIGKMTTLRKLLLTGNPLRTLRS 154 (422)
Q Consensus 99 l~~~~~~~l~--~~~~~~~-L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~ 154 (422)
+++|.++.++ ..+...+ |+.|++++|.++.++. .+..+++|++|++.+|.+.+++.
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhccc
Confidence 9999998876 4444444 9999999999988776 68899999999999998877654
No 127
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.4e-16 Score=123.84 Aligned_cols=132 Identities=25% Similarity=0.252 Sum_probs=80.3
Q ss_pred CCCCEEECCCCCCC--cCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCcc-CCcccccCCCCcEE
Q 014560 266 SSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRIL 342 (422)
Q Consensus 266 ~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~l 342 (422)
++|+.|++++|.+. .++.. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.. +|..+.++++|+.|
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGL-TAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSC-CGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCCCChhhHHHH-HHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 44555555555554 33322 45555566666666555544 445556666666666666665 44445556777777
Q ss_pred ECCCCCCcccC--ccCcCCCCCCEEeCCCCCCcccCC----ccccCCccccEEEccCCCCCccch
Q 014560 343 DLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP----ELGLLEPSLQALRLDGNPLRSIRR 401 (422)
Q Consensus 343 ~l~~n~l~~l~--~~~~~~~~L~~L~l~~n~l~~~~~----~~~~~~~~L~~l~l~~n~~~~i~~ 401 (422)
++++|.++.++ ..+..+++|+.|++++|.++.++. .+..+ ++|++|++++|.+.+++.
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l-~~L~~L~l~~n~~~~~~~ 164 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL-PQLTYLDGYDREDQEAPD 164 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC-SSCCEETTEETTSCBCCS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC-ccCcEecCCCCChhhccc
Confidence 77777777654 456667777777777777776665 33333 777777777777666554
No 128
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.63 E-value=2.9e-14 Score=131.35 Aligned_cols=313 Identities=13% Similarity=0.186 Sum_probs=168.9
Q ss_pred ccCCc-hhhhccc-cCCeEeccCCccccC-CCCCccCCCCCEEEcCCCc---CccC-chhhhCCCCCcEEEccCCccccc
Q 014560 35 LNGMP-ETIGSLS-RLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNA---LSAL-PAELGKLSKLGTLDLHSNQLKEY 107 (422)
Q Consensus 35 i~~~~-~~~~~~~-~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~---i~~l-~~~l~~~~~L~~L~l~~~~~~~l 107 (422)
++.++ .+|.++. .|+.+.+..+ ++.+ ..+|.+|.+|+.+.+..+. ++.+ ..+|..+.+|+.+.+..+ ++.+
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I 128 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEI 128 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-ccee
Confidence 45564 5688885 6999999765 6666 5789999999999998763 5566 456888999999887654 4555
Q ss_pred ccccccc--eecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCCCCccccccchhh
Q 014560 108 CVEACQL--RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLPENEDSEASTTKE 185 (422)
Q Consensus 108 ~~~~~~~--~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 185 (422)
....+.. .|+.+.+...........+..+.+|+.+.+..+ ++.+....+.+
T Consensus 129 ~~~aF~~c~~L~~i~lp~~~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-------------------------- 181 (394)
T 4gt6_A 129 DSEAFHHCEELDTVTIPEGVTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-------------------------- 181 (394)
T ss_dssp CTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT--------------------------
T ss_pred hhhhhhhhcccccccccceeeeecccceecccccccccccce-eeEeccccccc--------------------------
Confidence 5443332 388888865433223446778888888887654 44444444332
Q ss_pred hHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc--------------ccCCCCCcEEEecC
Q 014560 186 DLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--------------LSSCASLQTLILSR 251 (422)
Q Consensus 186 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--------------~~~~~~L~~L~l~~ 251 (422)
..++.+.+...........+..+..++...........+... +.....+..+.+..
T Consensus 182 ----------~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~ 251 (394)
T 4gt6_A 182 ----------TALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPN 251 (394)
T ss_dssp ----------CCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCT
T ss_pred ----------cceeEEEECCcccccccchhhhccccceecccccccccccceeecccccccccccccccccccceEEcCC
Confidence 233444443321111122222333444443333222111110 11122333343332
Q ss_pred CcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCC-
Q 014560 252 NKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAP- 330 (422)
Q Consensus 252 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~- 330 (422)
.+..+...+|..|.+|+.+.+... +..+...+|.+++.|+.+.+.. .+..+....|..|.+|+.+.+..+ ++.+.
T Consensus 252 -~v~~i~~~aF~~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~ 327 (394)
T 4gt6_A 252 -GVARIETHAFDSCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILD 327 (394)
T ss_dssp -TEEEECTTTTTTCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred -cceEcccceeeecccccEEecccc-cceecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehH
Confidence 233344455666666666666543 3445555666666677666653 344444555666666666666543 44332
Q ss_pred cccccCCCCcEEECCCCCCcccC-ccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCC
Q 014560 331 TDILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGN 394 (422)
Q Consensus 331 ~~~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n 394 (422)
.+|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.+++.++.... ..++.+ .+|+.+.+..+
T Consensus 328 ~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~--~~~~~~-~~L~~i~i~~~ 388 (394)
T 4gt6_A 328 DAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW--NAISTD-SGLQNLPVAPG 388 (394)
T ss_dssp TTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH--HTCBCC-CCC--------
T ss_pred hHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh--hhhhcc-CCCCEEEeCCC
Confidence 34556667777766433 55553 346667777777776653321 122222 56666666554
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.59 E-value=3.9e-15 Score=117.31 Aligned_cols=126 Identities=22% Similarity=0.209 Sum_probs=99.2
Q ss_pred CCCCCEEECCCCCCC--cCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCcc-CCcccccCCCCcE
Q 014560 265 LSSLSCLKLDNNPLR--QVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLRE-APTDILRLQQLRI 341 (422)
Q Consensus 265 ~~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~-l~~~~~~~~~L~~ 341 (422)
.++++.|++++|.+. .++. .+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.++. +|..+..+++|+.
T Consensus 16 ~~~l~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSRSNEGKLEG-LTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCBCBTTBCCS-CCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCcCChhHHHH-HHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 467888888888777 4544 467788888888888888776 567788888899998888886 6666667899999
Q ss_pred EECCCCCCcccC--ccCcCCCCCCEEeCCCCCCcccCC---ccccCCccccEEEccC
Q 014560 342 LDLSQNSLQSIP--EGFKNLTSLTELDLSDNNISALPP---ELGLLEPSLQALRLDG 393 (422)
Q Consensus 342 l~l~~n~l~~l~--~~~~~~~~L~~L~l~~n~l~~~~~---~~~~~~~~L~~l~l~~ 393 (422)
|++++|.++.++ ..+..+++|+.|++++|.++.++. ..+..+++|++|++++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 999999998764 678889999999999999988876 3333348899988764
No 130
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.59 E-value=1.5e-15 Score=150.12 Aligned_cols=150 Identities=27% Similarity=0.326 Sum_probs=101.2
Q ss_pred ceeeccCCcceecChhHHhhcccccceec-----ccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEc
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIA-----SKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYM 76 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l-----~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l 76 (422)
+.|+|++|.+..++...+ ....|+.+.+ ..+.+...+..+..+.+|+.|++++|.+..+|..+..+++|++|+|
T Consensus 176 ~~l~L~~n~~~~~~~~~l-~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~L 254 (727)
T 4b8c_D 176 PKIELFANGKDEANQALL-QHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYL 254 (727)
T ss_dssp -----------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBC
T ss_pred ceEEeeCCCCCcchhhHh-hcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEe
Confidence 467788888877665522 2233333333 3344444467788999999999999999999888889999999999
Q ss_pred CCCcCccCchhhhCCCCCcEEEccCCcccccccccccce-ecEEEcCCCCCCCCCccccccCCccEEEcCCCccccc
Q 014560 77 GNNALSALPAELGKLSKLGTLDLHSNQLKEYCVEACQLR-LSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 77 ~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~-L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 152 (422)
++|.++.+|..+..+++|++|+|++|.++.+|..+.... |+.|++++|.++.+|..+..+++|+.|++++|.++..
T Consensus 255 s~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~ 331 (727)
T 4b8c_D 255 NGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQ 331 (727)
T ss_dssp TTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSH
T ss_pred eCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCC
Confidence 999999999999999999999999999999988877766 9999999999999999999999999999999998643
No 131
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.58 E-value=4.9e-15 Score=116.71 Aligned_cols=124 Identities=21% Similarity=0.205 Sum_probs=104.1
Q ss_pred hcccccceeccccccc--CCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCcc-CchhhhCCCCCcEE
Q 014560 21 SWTMLTELIASKNLLN--GMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSA-LPAELGKLSKLGTL 97 (422)
Q Consensus 21 ~~~~L~~L~l~~~~i~--~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~-l~~~l~~~~~L~~L 97 (422)
..++|+.|++++|.+. .+|..+..+++|++|++++|.++.+ ..+..+++|++|++++|.++. +|..+..+++|++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L 93 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL 93 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence 3478999999999997 7788888899999999999998887 778889999999999999987 78778889999999
Q ss_pred EccCCcccccc--cccccce-ecEEEcCCCCCCCCCc----cccccCCccEEEcC
Q 014560 98 DLHSNQLKEYC--VEACQLR-LSVLDLSNNSLSGLPP----EIGKMTTLRKLLLT 145 (422)
Q Consensus 98 ~l~~~~~~~l~--~~~~~~~-L~~L~l~~~~~~~~~~----~~~~l~~L~~L~l~ 145 (422)
++++|.++.++ ..+...+ |+.|++++|.++..+. .+..+++|+.|+++
T Consensus 94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 99999988764 4444444 9999999998888665 58888999998775
No 132
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=3.2e-14 Score=116.98 Aligned_cols=125 Identities=24% Similarity=0.337 Sum_probs=67.9
Q ss_pred EEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcC
Q 014560 223 KLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIA 302 (422)
Q Consensus 223 ~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~ 302 (422)
.++++++.++.+|..+. +++++|++++|.+..++ ..+..+++|+.|++++|.+..+++..|..+++|+.|++++|.+
T Consensus 14 ~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip-~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 14 VVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVP-KELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp EEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCC-GGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhH-HHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 34455555554444322 34555555555555444 2345555555555555555555555555555555555555555
Q ss_pred CCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCc
Q 014560 303 SLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 303 ~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~ 350 (422)
+...+..|..+++|+.|++++|.++.++.. +..+++|+.|++++|.+.
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 555555555556666666666666555543 445566666666666554
No 133
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.57 E-value=3e-15 Score=121.52 Aligned_cols=105 Identities=22% Similarity=0.255 Sum_probs=74.1
Q ss_pred CccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCccc-ccCCCCcEEECCCCCCcccCc--cCcCCCCCCEEeC
Q 014560 291 MLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDI-LRLQQLRILDLSQNSLQSIPE--GFKNLTSLTELDL 367 (422)
Q Consensus 291 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~-~~~~~L~~l~l~~n~l~~l~~--~~~~~~~L~~L~l 367 (422)
+|+.|++++|.+++. ..+..+++|+.|++++|.++.++..+ ..+++|+.|++++|.++.+|. .+..+++|+.|++
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l 120 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCI 120 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEEC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEe
Confidence 445555555544443 33556667777777777777666544 677888888888888887776 6778888888888
Q ss_pred CCCCCcccCCc----cccCCccccEEEccCCCCCc
Q 014560 368 SDNNISALPPE----LGLLEPSLQALRLDGNPLRS 398 (422)
Q Consensus 368 ~~n~l~~~~~~----~~~~~~~L~~l~l~~n~~~~ 398 (422)
++|.++.++.. +..+ ++|+.|++++|...+
T Consensus 121 ~~N~i~~~~~~~~~~~~~l-~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 121 LRNPVTNKKHYRLYVIYKV-PQVRVLDFQKVKLKE 154 (176)
T ss_dssp CSSGGGGSTTHHHHHHHHC-TTCSEETTEECCHHH
T ss_pred cCCCCCCcHhHHHHHHHHC-CccceeCCCcCCHHH
Confidence 88888877775 4555 888888888887654
No 134
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.57 E-value=7.2e-13 Score=121.46 Aligned_cols=309 Identities=11% Similarity=0.101 Sum_probs=174.4
Q ss_pred HHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCCcCccCchh-hhCCCCC
Q 014560 18 LIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNNALSALPAE-LGKLSKL 94 (422)
Q Consensus 18 ~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~~i~~l~~~-l~~~~~L 94 (422)
++....+|+.+.+.. .++.++ .+|.+|.+|+.+.+..+ ++.+ ..+|.++ .|+.+.+..+ +..++.. |.. .+|
T Consensus 41 ~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L 115 (379)
T 4h09_A 41 WYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDL 115 (379)
T ss_dssp TGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCC
T ss_pred ccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCc
Confidence 466677788887764 466664 56788888888888654 5555 4566666 5777777544 4444333 433 467
Q ss_pred cEEEccCCccccccccccc-ceecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccccCCCChHHHHHHHccCC
Q 014560 95 GTLDLHSNQLKEYCVEACQ-LRLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSLVNGPTPALLKYLRSRLP 173 (422)
Q Consensus 95 ~~L~l~~~~~~~l~~~~~~-~~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 173 (422)
+.+.+..+ ++.+....+. ..++.+.+..+.-..-...+..+..++.+.+..............
T Consensus 116 ~~i~lp~~-~~~i~~~~F~~~~l~~~~~~~~v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~--------------- 179 (379)
T 4h09_A 116 DDFEFPGA-TTEIGNYIFYNSSVKRIVIPKSVTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL--------------- 179 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCCCCEEEECTTCCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE---------------
T ss_pred ccccCCCc-cccccccccccceeeeeeccceeeccccchhcccccccccccccccceeeccccee---------------
Confidence 77777654 2333332222 235555554432111233455666666666554432111100000
Q ss_pred CCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCc
Q 014560 174 ENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNK 253 (422)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~ 253 (422)
. +..............+..+.+...........+..+.+++.+.+..+
T Consensus 180 -----------------------------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~- 227 (379)
T 4h09_A 180 -----------------------------Y--NKNKTILESYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG- 227 (379)
T ss_dssp -----------------------------E--ETTSSEEEECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-
T ss_pred -----------------------------c--ccccceeccccccccccccccccceeEEeecccccccccceeeeccc-
Confidence 0 00000111122233444444444322222334566677777777543
Q ss_pred CCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCc-c
Q 014560 254 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPT-D 332 (422)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~-~ 332 (422)
+..+...+|..+..|+.+.+..+ +..+...+|..+.+|+.+.+..+ +.......|..|.+|+.+.+.++.++.++. +
T Consensus 228 ~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~a 305 (379)
T 4h09_A 228 VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRV 305 (379)
T ss_dssp CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTT
T ss_pred eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccceehhhh
Confidence 55555666677777777777653 56666667777777777777643 444445567777777777777776665543 3
Q ss_pred cccCCCCcEEECCCCCCcccC-ccCcCCCCCCEEeCCCCCCcccCCccccCC
Q 014560 333 ILRLQQLRILDLSQNSLQSIP-EGFKNLTSLTELDLSDNNISALPPELGLLE 383 (422)
Q Consensus 333 ~~~~~~L~~l~l~~n~l~~l~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~ 383 (422)
|.+|.+|+.+.+..+ ++.+. .+|.+|++|+.+.+..+ ++.|....+..|
T Consensus 306 F~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 306 FMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred hcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 667777777777543 55553 45777777777777543 666666666664
No 135
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.56 E-value=1.9e-15 Score=122.67 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=109.7
Q ss_pred HhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchh-hhCCCCCcEE
Q 014560 19 IASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAE-LGKLSKLGTL 97 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~-l~~~~~L~~L 97 (422)
+.++.+|+.|++++|.++.++......++|++|++++|.++.+ +.+..+++|++|++++|.++.+|.. +..+++|++|
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp EECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred cCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 6778899999999999988865333344999999999998887 6788899999999999999988754 4889999999
Q ss_pred EccCCccccccc--ccccce-ecEEEcCCCCCCCCCcc----ccccCCccEEEcCCCcccc
Q 014560 98 DLHSNQLKEYCV--EACQLR-LSVLDLSNNSLSGLPPE----IGKMTTLRKLLLTGNPLRT 151 (422)
Q Consensus 98 ~l~~~~~~~l~~--~~~~~~-L~~L~l~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~ 151 (422)
++++|.+..++. .+...+ |+.|++++|.+..++.. +..+++|+.|++++|...+
T Consensus 94 ~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 94 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred ECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 999999988876 444444 99999999998887774 8899999999999887654
No 136
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=7.9e-14 Score=114.62 Aligned_cols=128 Identities=27% Similarity=0.363 Sum_probs=114.4
Q ss_pred cceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCC
Q 014560 198 SKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNP 277 (422)
Q Consensus 198 l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 277 (422)
.+.++++++.+..+|..+. +++++|++++|.++.+|..|..+++|+.|++++|.+..+++..|..+++|+.|++++|.
T Consensus 12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4678888888888887653 68999999999999998889999999999999999999988888999999999999999
Q ss_pred CCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCc
Q 014560 278 LRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLR 327 (422)
Q Consensus 278 ~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (422)
+..+++..|..+++|+.|++++|.+.......+..+++|+.|++++|.+.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 99998888999999999999999999888778889999999999998765
No 137
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4.3e-14 Score=116.27 Aligned_cols=126 Identities=23% Similarity=0.307 Sum_probs=58.6
Q ss_pred ceeeccCCCCCCCCcccccCCCccEEeCCCCccccCCcc--ccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCC
Q 014560 199 KELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQELPPE--LSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNN 276 (422)
Q Consensus 199 ~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 276 (422)
+.++++++.+..+|..+.. ++++|++++|.++.+++. +..+++|++|++++|.+..+.+..|..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4445555555554443322 455555555555444332 444455555555555444444444444444555555544
Q ss_pred CCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcC
Q 014560 277 PLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQL 326 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i 326 (422)
.+..+++..|..+++|+.|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 138 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCB
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCc
Confidence 44444444444444444444444444444344444444444444444433
No 138
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.55 E-value=4.8e-14 Score=115.98 Aligned_cols=127 Identities=24% Similarity=0.364 Sum_probs=105.8
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChH-HHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCC
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDA-ILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYN 300 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~ 300 (422)
+.++++++.++.+|..+.. ++++|++++|.+..+++. .+..+++|+.|++++|.+..+.+..|..+++|+.|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 6789999999888876543 899999999988887763 4788899999999999998887777888899999999999
Q ss_pred cCCCCCCCCCCCCccCceEEeCCCcCccC-CcccccCCCCcEEECCCCCCc
Q 014560 301 IASLPENPPFSSLPHLQELYLRRMQLREA-PTDILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 301 ~~~~~~~~~~~~~~~L~~L~l~~~~i~~l-~~~~~~~~~L~~l~l~~n~l~ 350 (422)
.+++..+..+..+++|++|++++|.++.+ |..+..+++|+.|++++|.++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 88888777788888888888888888854 556777888888888888776
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.55 E-value=1.3e-13 Score=111.91 Aligned_cols=127 Identities=28% Similarity=0.420 Sum_probs=63.1
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+.++++++.++.+|..+. ++|+.|++++|.+..++...+..+++|+.|++++|.+..+++..|..+++|+.|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344555555555443222 455555555555555554444555555555555555555554444555555555555555
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCCCCCc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQNSLQ 350 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~n~l~ 350 (422)
+++.....+..+++|+.|++++|.++.++.. +..+++|+.+++++|.+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCee
Confidence 5544444444445555555555544444433 233444555555554443
No 140
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=2.6e-13 Score=110.14 Aligned_cols=130 Identities=30% Similarity=0.388 Sum_probs=90.2
Q ss_pred CCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcc-cccCCCCcEEECCC
Q 014560 268 LSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTD-ILRLQQLRILDLSQ 346 (422)
Q Consensus 268 L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~-~~~~~~L~~l~l~~ 346 (422)
.+.++++++.+..++... .++++.|++++|.+.+.....+..+++|++|++++|.++.++.. +.++++|+.|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTGI---PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTTC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCCC---CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455666666666655432 25667777777766666555566677777777777777766554 46677888888888
Q ss_pred CCCcccCcc-CcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccc
Q 014560 347 NSLQSIPEG-FKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIR 400 (422)
Q Consensus 347 n~l~~l~~~-~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~ 400 (422)
|.++.++.. +..+++|+.|++++|.++.++...+..+++|++|++++|++....
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 140 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 140 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence 888776543 677788888888888888777776554478888888888876443
No 141
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.53 E-value=1.8e-12 Score=118.73 Aligned_cols=300 Identities=11% Similarity=0.140 Sum_probs=176.2
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 79 (422)
+.+.+. ..++.|++.+|.+|.+|+.+.+..+ ++.++ .+|.++ +|+.+.+..+ ++.+ ..+|.++ +|+.+.+..+
T Consensus 49 ~~v~ip-~~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~ 123 (379)
T 4h09_A 49 SEVRVN-SGITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA 123 (379)
T ss_dssp SEEEEC-TTEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT
T ss_pred EEEEeC-CCccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc
Confidence 344443 2578999999999999999999754 76774 667777 7888888654 5555 3456655 8999999875
Q ss_pred cCccCc-hhhhCCCCCcEEEccCCccccccccccc-c-eecEEEcCCCCCCCCCccccccCCccEEEcCCCccccccccc
Q 014560 80 ALSALP-AELGKLSKLGTLDLHSNQLKEYCVEACQ-L-RLSVLDLSNNSLSGLPPEIGKMTTLRKLLLTGNPLRTLRSSL 156 (422)
Q Consensus 80 ~i~~l~-~~l~~~~~L~~L~l~~~~~~~l~~~~~~-~-~L~~L~l~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~ 156 (422)
+..+. ..|.++ +|..+.+..+ ++.+....+. . .++.+.+...........................
T Consensus 124 -~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 192 (379)
T 4h09_A 124 -TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPA-------- 192 (379)
T ss_dssp -CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCT--------
T ss_pred -cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccc--------
Confidence 33333 334443 5666665543 3333333222 1 2555555443322111111000000000000000
Q ss_pred cCCCChHHHHHHHccCCCCccccccchhhhHHHhhhccccccceeeccCCCCCCCCcccccCCCccEEeCCCCccccC-C
Q 014560 157 VNGPTPALLKYLRSRLPENEDSEASTTKEDLITMATRLSVTSKELSLEGMNLSAIPSEIWEAGEITKLDLSRNSIQEL-P 235 (422)
Q Consensus 157 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~-~ 235 (422)
...+..+.+...........+....+++.+.+... +..+ .
T Consensus 193 --------------------------------------~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~ 233 (379)
T 4h09_A 193 --------------------------------------AKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSG-VTTLGD 233 (379)
T ss_dssp --------------------------------------TCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTT-CCEECT
T ss_pred --------------------------------------cccccccccccceeEEeecccccccccceeeeccc-eeEEcc
Confidence 01111121111111111222334556777776553 3333 2
Q ss_pred ccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCcc
Q 014560 236 PELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPH 315 (422)
Q Consensus 236 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~ 315 (422)
..|..+..|+.+.+..+ ++.+...+|..+.+|+.+.+.. .+..++...|..|++|+.+.+.++.++.+....|..|.+
T Consensus 234 ~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~ 311 (379)
T 4h09_A 234 GAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVK 311 (379)
T ss_dssp TTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTT
T ss_pred ccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceeccccccccccccccccccccccceehhhhhcCCCC
Confidence 34677788888888764 6667777778888888888864 466677777888888888888877777777777888888
Q ss_pred CceEEeCCCcCccCC-cccccCCCCcEEECCCCCCccc-CccCcCCC
Q 014560 316 LQELYLRRMQLREAP-TDILRLQQLRILDLSQNSLQSI-PEGFKNLT 360 (422)
Q Consensus 316 L~~L~l~~~~i~~l~-~~~~~~~~L~~l~l~~n~l~~l-~~~~~~~~ 360 (422)
|+.+.+..+ ++.+. .+|.+|++|+.+.+..+ ++.+ ..+|.+|.
T Consensus 312 L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 312 LSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred CCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 888888654 55443 35778888888888654 6655 34576664
No 142
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=4.9e-14 Score=139.38 Aligned_cols=124 Identities=35% Similarity=0.425 Sum_probs=91.1
Q ss_pred CCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCCcCccCCcccccCCCCcEEECCCCCCcccCccCcCCCC
Q 014560 282 PSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRMQLREAPTDILRLQQLRILDLSQNSLQSIPEGFKNLTS 361 (422)
Q Consensus 282 ~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~i~~l~~~~~~~~~L~~l~l~~n~l~~l~~~~~~~~~ 361 (422)
++..+..++.|+.|++++|.+..+. ..+..+++|+.|++++|.++.+|..+.++++|+.|+|++|.++.+|..+..+++
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~l~-~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~ 294 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFNIS-ANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQ 294 (727)
T ss_dssp ------CCCCCCEEECTTSCCSCCC-GGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTT
T ss_pred ChhhhccCCCCcEEECCCCCCCCCC-hhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCC
Confidence 3444666777777777777766433 334467788888888888888887788888888888888888888888888888
Q ss_pred CCEEeCCCCCCcccCCccccCCccccEEEccCCCCCccchHHHhhh
Q 014560 362 LTELDLSDNNISALPPELGLLEPSLQALRLDGNPLRSIRRTILDRG 407 (422)
Q Consensus 362 L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~~i~~~~~~~~ 407 (422)
|+.|+|++|.|+.+|..+..+ ++|++|++++|++....+..+...
T Consensus 295 L~~L~L~~N~l~~lp~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~~ 339 (727)
T 4b8c_D 295 LKYFYFFDNMVTTLPWEFGNL-CNLQFLGVEGNPLEKQFLKILTEK 339 (727)
T ss_dssp CSEEECCSSCCCCCCSSTTSC-TTCCCEECTTSCCCSHHHHHHHHH
T ss_pred CCEEECCCCCCCccChhhhcC-CCccEEeCCCCccCCCChHHHhhc
Confidence 888888888888888876666 888888888888887666665543
No 143
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.48 E-value=4.4e-16 Score=129.05 Aligned_cols=131 Identities=27% Similarity=0.319 Sum_probs=70.5
Q ss_pred Hhhcccccceeccccccc-CCc------hhhhccccCCeEeccCCccccCCCCCccCCCCCEEEcCCCcCccCchhhhCC
Q 014560 19 IASWTMLTELIASKNLLN-GMP------ETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFYMGNNALSALPAELGKL 91 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~~i~-~~~------~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~ 91 (422)
+.....++.++++++.+. .+| ..+..+++|++|++++|.++.+| .+.++++|+.|++++|.++.+|..+..+
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~ 92 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVA 92 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcC
Confidence 334445555555544442 222 25555666666666666555555 5555566666666666655555555555
Q ss_pred CCCcEEEccCCcccccccccccceecEEEcCCCCCCCCCc--cccccCCccEEEcCCCccc
Q 014560 92 SKLGTLDLHSNQLKEYCVEACQLRLSVLDLSNNSLSGLPP--EIGKMTTLRKLLLTGNPLR 150 (422)
Q Consensus 92 ~~L~~L~l~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~ 150 (422)
++|++|++++|.++.++......+|+.|++++|.++.++. .+..+++|++|++++|++.
T Consensus 93 ~~L~~L~L~~N~l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~ 153 (198)
T 1ds9_A 93 DTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLY 153 (198)
T ss_dssp HHCSEEEEEEEECCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHH
T ss_pred CcCCEEECcCCcCCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccc
Confidence 5666666666665555422122226666666666555332 4555666666666666553
No 144
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=1.5e-12 Score=105.02 Aligned_cols=104 Identities=19% Similarity=0.352 Sum_probs=75.8
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCCCC-CccCCCCCEEEcCCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPSS-ISGCCSLAEFYMGNN 79 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~~-~~~~~~L~~L~l~~~ 79 (422)
+.+++++|++..+|.... ++|++|++++|.+..+ +..|.++++|++|++++|.++.+|.. |.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCSSCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCCccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 457777887877776522 6777888888888766 46677778888888888877777543 577778888888888
Q ss_pred cCccCchh-hhCCCCCcEEEccCCcccccc
Q 014560 80 ALSALPAE-LGKLSKLGTLDLHSNQLKEYC 108 (422)
Q Consensus 80 ~i~~l~~~-l~~~~~L~~L~l~~~~~~~l~ 108 (422)
.++.+|.. |..+++|++|++++|.+...+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~ 121 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDCEC 121 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccccc
Confidence 77777654 777778888888777766443
No 145
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.39 E-value=1.5e-12 Score=104.63 Aligned_cols=103 Identities=22% Similarity=0.381 Sum_probs=81.2
Q ss_pred ceeeccCCcceecChhHHhhcccccceecccccccCC-chhhhccccCCeEeccCCccccCCC-CCccCCCCCEEEcCCC
Q 014560 2 SKLDVEGNKLTVLSNNLIASWTMLTELIASKNLLNGM-PETIGSLSRLIRLDLHQNRILSIPS-SISGCCSLAEFYMGNN 79 (422)
Q Consensus 2 ~~L~ls~~~i~~i~~~~~~~~~~L~~L~l~~~~i~~~-~~~~~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~l~~~ 79 (422)
++|++++|++..+|... .++|++|++++|.++.+ +..|..+++|++|++++|.++.+|. .|.++++|++|++++|
T Consensus 12 ~~l~~s~n~l~~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 57888888888888653 37788888888888777 5668888888888888888887754 4678888888888888
Q ss_pred cCccCch-hhhCCCCCcEEEccCCccccc
Q 014560 80 ALSALPA-ELGKLSKLGTLDLHSNQLKEY 107 (422)
Q Consensus 80 ~i~~l~~-~l~~~~~L~~L~l~~~~~~~l 107 (422)
.++.++. .|..+++|++|++++|.+...
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 8887765 477888888888888877643
No 146
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=3.9e-14 Score=117.23 Aligned_cols=143 Identities=22% Similarity=0.305 Sum_probs=117.6
Q ss_pred eeeccCCcce-------ecChhHHhhcccccceecccccccCCchhhhccccCCeEeccCCccccCCCCCccCCCCCEEE
Q 014560 3 KLDVEGNKLT-------VLSNNLIASWTMLTELIASKNLLNGMPETIGSLSRLIRLDLHQNRILSIPSSISGCCSLAEFY 75 (422)
Q Consensus 3 ~L~ls~~~i~-------~i~~~~~~~~~~L~~L~l~~~~i~~~~~~~~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~ 75 (422)
.++++++.+. .++. .+.++++|++|++++|.++.+| .+..+++|++|++++|.++.+|..+..+++|++|+
T Consensus 22 ~l~l~~~~l~~~~~~l~~l~~-~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~ 99 (198)
T 1ds9_A 22 ATEAEKVELHGMIPPIEKMDA-TLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELW 99 (198)
T ss_dssp CTTCSEEECCBCCTTCCCCHH-HHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEE
T ss_pred CcchheeEeccccCcHhhhhH-HHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEE
Confidence 4455555544 3443 5999999999999999999988 89999999999999999999998888889999999
Q ss_pred cCCCcCccCchhhhCCCCCcEEEccCCccccccc--ccccce-ecEEEcCCCCCCCC-Cc----------cccccCCccE
Q 014560 76 MGNNALSALPAELGKLSKLGTLDLHSNQLKEYCV--EACQLR-LSVLDLSNNSLSGL-PP----------EIGKMTTLRK 141 (422)
Q Consensus 76 l~~~~i~~l~~~l~~~~~L~~L~l~~~~~~~l~~--~~~~~~-L~~L~l~~~~~~~~-~~----------~~~~l~~L~~ 141 (422)
+++|.++.+| .+..+++|++|++++|.++.++. .+.... |+.|++++|.+... +. .+..+++|+.
T Consensus 100 L~~N~l~~l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~ 178 (198)
T 1ds9_A 100 ISYNQIASLS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKK 178 (198)
T ss_dssp EEEEECCCHH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSE
T ss_pred CcCCcCCcCC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEE
Confidence 9999999987 68899999999999999997765 344444 99999999987653 22 2778899998
Q ss_pred EEcCCCccc
Q 014560 142 LLLTGNPLR 150 (422)
Q Consensus 142 L~l~~~~~~ 150 (422)
|+ +++++
T Consensus 179 Ld--~~~i~ 185 (198)
T 1ds9_A 179 LD--GMPVD 185 (198)
T ss_dssp EC--CGGGT
T ss_pred EC--CcccC
Confidence 86 66553
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.35 E-value=1e-11 Score=99.78 Aligned_cols=104 Identities=27% Similarity=0.394 Sum_probs=54.3
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+.++++++.++.+|..+. ++|+.|++++|.+..+++..|..+++|+.|++++|.+..+++..|..+++|+.|++++|.
T Consensus 12 ~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 12 TTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 445555555555554332 455555555555555554445555555555555555555555445555555555555555
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLR 327 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (422)
+.+..+..+..+++|+.|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55444444445555555555555443
No 148
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=1.5e-11 Score=99.12 Aligned_cols=104 Identities=23% Similarity=0.350 Sum_probs=59.8
Q ss_pred cEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEccCCc
Q 014560 222 TKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLSYNI 301 (422)
Q Consensus 222 ~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~~~~ 301 (422)
+.++++++.++.+|..+. ++|+.|++++|.+..+++..|..+++|+.|++++|.+..+++..|..+++|+.|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 455666666655555433 556666666666666555555556666666666666666555555555566666666555
Q ss_pred CCCCCCCCCCCCccCceEEeCCCcCc
Q 014560 302 ASLPENPPFSSLPHLQELYLRRMQLR 327 (422)
Q Consensus 302 ~~~~~~~~~~~~~~L~~L~l~~~~i~ 327 (422)
+.+.....+..+++|+.|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 55554444555555555555555544
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=7e-13 Score=120.41 Aligned_cols=152 Identities=19% Similarity=0.237 Sum_probs=117.6
Q ss_pred CceeeccCCcceecChhHHhhc-----ccccceecccccccCC--chhhhccccCCeEeccCCccccC-----CCCC-cc
Q 014560 1 MSKLDVEGNKLTVLSNNLIASW-----TMLTELIASKNLLNGM--PETIGSLSRLIRLDLHQNRILSI-----PSSI-SG 67 (422)
Q Consensus 1 L~~L~ls~~~i~~i~~~~~~~~-----~~L~~L~l~~~~i~~~--~~~~~~~~~L~~L~l~~~~~~~l-----~~~~-~~ 67 (422)
|++|++++|.++.....++..+ .+|++|++++|.++.. ......+.+|++|++++|.+... ...+ ..
T Consensus 74 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~ 153 (372)
T 3un9_A 74 LRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHD 153 (372)
T ss_dssp CCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHST
T ss_pred CCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhc
Confidence 5789999999997776666666 7999999999999643 22234567899999999988632 2222 35
Q ss_pred CCCCCEEEcCCCcCc-----cCchhhhCCCCCcEEEccCCccccc-----ccccccc-eecEEEcCCCCCCC-----CCc
Q 014560 68 CCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKEY-----CVEACQL-RLSVLDLSNNSLSG-----LPP 131 (422)
Q Consensus 68 ~~~L~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~l-----~~~~~~~-~L~~L~l~~~~~~~-----~~~ 131 (422)
.++|++|++++|.++ .++..+..+++|++|++++|.+.+. +..+... .|+.|++++|.++. +..
T Consensus 154 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~ 233 (372)
T 3un9_A 154 QCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALAR 233 (372)
T ss_dssp TCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHH
T ss_pred CCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHH
Confidence 689999999999987 3566678899999999999998742 3333333 49999999999876 344
Q ss_pred cccccCCccEEEcCCCccccc
Q 014560 132 EIGKMTTLRKLLLTGNPLRTL 152 (422)
Q Consensus 132 ~~~~l~~L~~L~l~~~~~~~~ 152 (422)
.+..+++|++|++++|.++..
T Consensus 234 ~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 234 AAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHCSSCCEEECTTSSCCHH
T ss_pred HHHhCCCCCEEeccCCCCCHH
Confidence 566779999999999998654
No 150
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=1.6e-13 Score=124.55 Aligned_cols=156 Identities=19% Similarity=0.177 Sum_probs=114.0
Q ss_pred CCCccEEeCCCCcccc-----CCcccc-CCCCCcEEEecCCcCCCCChHH-HhcCCCCCEEECCCCCCCcCCCCCC----
Q 014560 218 AGEITKLDLSRNSIQE-----LPPELS-SCASLQTLILSRNKIKDWPDAI-LTSLSSLSCLKLDNNPLRQVPSDGF---- 286 (422)
Q Consensus 218 ~~~L~~L~l~~~~l~~-----~~~~~~-~~~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~---- 286 (422)
.+.++.|++++|.++. +...+. .+++|++|++++|.+.+..... ...+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 3579999999998875 222233 3479999999999886643322 2346789999999998875433222
Q ss_pred -CCCCCccEEEccCCcCCCCCC----CCCCCCccCceEEeCCCcCcc-----CCcccccCCCCcEEECCCCCCcc-----
Q 014560 287 -KDIPMLQILDLSYNIASLPEN----PPFSSLPHLQELYLRRMQLRE-----APTDILRLQQLRILDLSQNSLQS----- 351 (422)
Q Consensus 287 -~~~~~L~~l~l~~~~~~~~~~----~~~~~~~~L~~L~l~~~~i~~-----l~~~~~~~~~L~~l~l~~n~l~~----- 351 (422)
...++|+.|++++|.++.... ..+..+++|++|++++|.++. +...+..+++|+.|++++|.++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 346789999999998764322 223567889999999998873 34456677899999999999873
Q ss_pred cCccCcCCCCCCEEeCCCCCCc
Q 014560 352 IPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 352 l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
++..+..+++|+.|++++|.|+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCC
T ss_pred HHHHHHhCCCCCEEeccCCCCC
Confidence 4555667889999999999887
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.06 E-value=2.5e-10 Score=103.15 Aligned_cols=100 Identities=22% Similarity=0.242 Sum_probs=50.9
Q ss_pred eeccCC-cceecChhHHhhcccccceeccc-ccccCCc-hhhhccccCCeEeccCCccccC-CCCCccCCCCCEEEcCCC
Q 014560 4 LDVEGN-KLTVLSNNLIASWTMLTELIASK-NLLNGMP-ETIGSLSRLIRLDLHQNRILSI-PSSISGCCSLAEFYMGNN 79 (422)
Q Consensus 4 L~ls~~-~i~~i~~~~~~~~~~L~~L~l~~-~~i~~~~-~~~~~~~~L~~L~l~~~~~~~l-~~~~~~~~~L~~L~l~~~ 79 (422)
++++++ ++..||. +..+.+|++|+|++ |.++.++ ..|.++++|++|+|++|.++.+ |..|.++++|+.|+|++|
T Consensus 13 v~~~~~n~l~~ip~--l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALDSLHH--LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCTTTTT--SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCCccCC--CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 455554 5555555 55555555555553 5555443 3455555555555555555544 234455555555555555
Q ss_pred cCccCchhhhCCCCCcEEEccCCccc
Q 014560 80 ALSALPAELGKLSKLGTLDLHSNQLK 105 (422)
Q Consensus 80 ~i~~l~~~l~~~~~L~~L~l~~~~~~ 105 (422)
.++.+|..+.....|+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred ccceeCHHHcccCCceEEEeeCCCcc
Confidence 55555433222222555555555444
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.02 E-value=9.8e-10 Score=99.24 Aligned_cols=104 Identities=21% Similarity=0.209 Sum_probs=82.1
Q ss_pred ceeeccCC-CCCCCCcccccCCCccEEeCCC-CccccCCc-cccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCC
Q 014560 199 KELSLEGM-NLSAIPSEIWEAGEITKLDLSR-NSIQELPP-ELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDN 275 (422)
Q Consensus 199 ~~l~l~~~-~~~~~~~~~~~~~~L~~L~l~~-~~l~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 275 (422)
..++++++ .+..+|. +..+.+|+.|+|++ |.++.+++ .|..+++|+.|++++|.+..+++..|..+++|+.|++++
T Consensus 11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~ 89 (347)
T 2ifg_A 11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF 89 (347)
T ss_dssp SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence 45677776 7778888 77778888888886 88887664 478888888888888888888877788888888888888
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCC
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASL 304 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~ 304 (422)
|.+..+++..|..++ |+.|++.+|.+..
T Consensus 90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 90 NALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 888888777666555 8888888887653
No 153
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.76 E-value=4e-09 Score=85.67 Aligned_cols=112 Identities=13% Similarity=0.074 Sum_probs=76.2
Q ss_pred hhHHhhcccccceecccc-cccC-----CchhhhccccCCeEeccCCccc-----cCCCCCccCCCCCEEEcCCCcCc--
Q 014560 16 NNLIASWTMLTELIASKN-LLNG-----MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS-- 82 (422)
Q Consensus 16 ~~~~~~~~~L~~L~l~~~-~i~~-----~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~i~-- 82 (422)
+.++...+.|++|++++| .++. +...+...++|++|++++|.+. .+...+...+.|++|++++|.++
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 345666778888888887 7753 3455666778888888888776 23444566677888888888876
Q ss_pred ---cCchhhhCCCCCcEEEc--cCCcccc-----cccccccc-eecEEEcCCCCCC
Q 014560 83 ---ALPAELGKLSKLGTLDL--HSNQLKE-----YCVEACQL-RLSVLDLSNNSLS 127 (422)
Q Consensus 83 ---~l~~~l~~~~~L~~L~l--~~~~~~~-----l~~~~~~~-~L~~L~l~~~~~~ 127 (422)
.+...+...++|++|++ ++|.+.. +...+... .|+.|++++|.+.
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 24566777778888888 7777763 33333222 3888888877653
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.72 E-value=4.3e-09 Score=94.66 Aligned_cols=154 Identities=18% Similarity=0.224 Sum_probs=66.8
Q ss_pred cCCCccEEeCCCCccc----------cCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCCCcCCCCCC
Q 014560 217 EAGEITKLDLSRNSIQ----------ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGF 286 (422)
Q Consensus 217 ~~~~L~~L~l~~~~l~----------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 286 (422)
.+++|+.|.+.+.... .+...+..+|+|++|.++++.-..++. + .+++|+.|++..+.+..-....+
T Consensus 137 ~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~--~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 137 KFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK--K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS--C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred hcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc--c-cCCCCcEEEEecCCCChHHHHHH
Confidence 3456666666543221 122234455666666666552112222 1 25566666665554432111111
Q ss_pred --CCCCCccEEEccC--CcCCCCC-----CCCC--CCCccCceEEeCCCcCcc-CCccc---ccCCCCcEEECCCCCCcc
Q 014560 287 --KDIPMLQILDLSY--NIASLPE-----NPPF--SSLPHLQELYLRRMQLRE-APTDI---LRLQQLRILDLSQNSLQS 351 (422)
Q Consensus 287 --~~~~~L~~l~l~~--~~~~~~~-----~~~~--~~~~~L~~L~l~~~~i~~-l~~~~---~~~~~L~~l~l~~n~l~~ 351 (422)
..+|+|+.|+++. +...+.. ...+ ..+|+|+.|.+.+|.+.. .+..+ ..+++|+.|+++.|.++.
T Consensus 214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d 293 (362)
T 2ra8_A 214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTD 293 (362)
T ss_dssp HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBH
T ss_pred HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCCh
Confidence 1455666665532 1111100 0001 234555555555555441 11111 124455555555555542
Q ss_pred -----cCccCcCCCCCCEEeCCCCCCc
Q 014560 352 -----IPEGFKNLTSLTELDLSDNNIS 373 (422)
Q Consensus 352 -----l~~~~~~~~~L~~L~l~~n~l~ 373 (422)
++..+..+++|+.|++++|.|+
T Consensus 294 ~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 294 EGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp HHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHHhhcccCCcceEEECCCCcCC
Confidence 2333344555555555555554
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.65 E-value=1e-08 Score=83.19 Aligned_cols=113 Identities=17% Similarity=0.124 Sum_probs=87.6
Q ss_pred chhhhccccCCeEeccCC-ccc-----cCCCCCccCCCCCEEEcCCCcCc-----cCchhhhCCCCCcEEEccCCcccc-
Q 014560 39 PETIGSLSRLIRLDLHQN-RIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE- 106 (422)
Q Consensus 39 ~~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~- 106 (422)
...+..++.|++|++++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|++++|.+.+
T Consensus 29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~ 108 (185)
T 1io0_A 29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS 108 (185)
T ss_dssp HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence 445677899999999999 776 34455677889999999999987 355667778899999999999874
Q ss_pred ----cccccccce-ecEEEc--CCCCCCC-----CCccccccCCccEEEcCCCcccc
Q 014560 107 ----YCVEACQLR-LSVLDL--SNNSLSG-----LPPEIGKMTTLRKLLLTGNPLRT 151 (422)
Q Consensus 107 ----l~~~~~~~~-L~~L~l--~~~~~~~-----~~~~~~~l~~L~~L~l~~~~~~~ 151 (422)
+...+...+ |+.|++ ++|.+.. +...+...+.|++|++++|.+..
T Consensus 109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~ 165 (185)
T 1io0_A 109 GILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGP 165 (185)
T ss_dssp HHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCCh
Confidence 344444443 999999 8888876 44556677999999999998753
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=5.4e-08 Score=87.51 Aligned_cols=173 Identities=13% Similarity=0.140 Sum_probs=111.0
Q ss_pred cccceeeccCCCCC----------CCCcccccCCCccEEeCCCCccccCCccccCCCCCcEEEecCCcCCCCChHHHh--
Q 014560 196 VTSKELSLEGMNLS----------AIPSEIWEAGEITKLDLSRNSIQELPPELSSCASLQTLILSRNKIKDWPDAILT-- 263 (422)
Q Consensus 196 ~~l~~l~l~~~~~~----------~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-- 263 (422)
.+++.|.+.+.... .+...+..+++|+.|.++++.-..+++ +. +++|++|.+..+.+.......+.
T Consensus 139 ~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~ 216 (362)
T 2ra8_A 139 AHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGK-KP-RPNLKSLEIISGGLPDSVVEDILGS 216 (362)
T ss_dssp TTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHS
T ss_pred chhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecc-cc-CCCCcEEEEecCCCChHHHHHHHHc
Confidence 47778877543221 233344557899999999874234544 33 78999999998877653333333
Q ss_pred cCCCCCEEECCCC--C------CCcCCCC-CCCCCCCccEEEccCCcCCCCCCCC---CCCCccCceEEeCCCcCcc---
Q 014560 264 SLSSLSCLKLDNN--P------LRQVPSD-GFKDIPMLQILDLSYNIASLPENPP---FSSLPHLQELYLRRMQLRE--- 328 (422)
Q Consensus 264 ~~~~L~~L~l~~~--~------~~~~~~~-~~~~~~~L~~l~l~~~~~~~~~~~~---~~~~~~L~~L~l~~~~i~~--- 328 (422)
.+++|+.|+++.+ . +..+... .-..+|+|+.|++.+|.+....... ...+++|++|+++.|.++.
T Consensus 217 ~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~ 296 (362)
T 2ra8_A 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGA 296 (362)
T ss_dssp BCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHH
T ss_pred cCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHH
Confidence 6899999998532 1 1111111 0135799999999988775321111 1357999999999998874
Q ss_pred --CCcccccCCCCcEEECCCCCCcc-cCccCcCCCCCCEEeCCCCC
Q 014560 329 --APTDILRLQQLRILDLSQNSLQS-IPEGFKNLTSLTELDLSDNN 371 (422)
Q Consensus 329 --l~~~~~~~~~L~~l~l~~n~l~~-l~~~~~~~~~L~~L~l~~n~ 371 (422)
++..+..+++|+.|++++|.++. ....+...- -..++++.++
T Consensus 297 ~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 297 RLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp HHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred HHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc-CCEEEecCCc
Confidence 34444568999999999998873 112222100 3557777765
No 157
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.24 E-value=1.1e-06 Score=74.95 Aligned_cols=61 Identities=30% Similarity=0.420 Sum_probs=27.0
Q ss_pred ccccCCeEeccCCccccC---CCCCccCCCCCEEEcCCCcCccCchhhhCCC--CCcEEEccCCccc
Q 014560 44 SLSRLIRLDLHQNRILSI---PSSISGCCSLAEFYMGNNALSALPAELGKLS--KLGTLDLHSNQLK 105 (422)
Q Consensus 44 ~~~~L~~L~l~~~~~~~l---~~~~~~~~~L~~L~l~~~~i~~l~~~l~~~~--~L~~L~l~~~~~~ 105 (422)
++++|++|++++|.++.+ |..+..+++|+.|+|++|.+..+ ..+..+. +|+.|++++|.+.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLC 233 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCc
Confidence 344555555555544433 12333445555555555554433 1122222 4555555555443
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=5.8e-07 Score=70.98 Aligned_cols=81 Identities=14% Similarity=0.079 Sum_probs=58.2
Q ss_pred ccccceecccccccCCc-hhhhccccCCeEeccCCc-cccC-CCCCcc----CCCCCEEEcCCCc-Ccc-CchhhhCCCC
Q 014560 23 TMLTELIASKNLLNGMP-ETIGSLSRLIRLDLHQNR-ILSI-PSSISG----CCSLAEFYMGNNA-LSA-LPAELGKLSK 93 (422)
Q Consensus 23 ~~L~~L~l~~~~i~~~~-~~~~~~~~L~~L~l~~~~-~~~l-~~~~~~----~~~L~~L~l~~~~-i~~-l~~~l~~~~~ 93 (422)
..|+.|++++|.++... ..+..|++|++|++++|. ++.- -..+.. +++|++|++++|. +++ .-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 47899999998886543 567888999999999985 5511 122333 3579999998874 772 2245778899
Q ss_pred CcEEEccCCc
Q 014560 94 LGTLDLHSNQ 103 (422)
Q Consensus 94 L~~L~l~~~~ 103 (422)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999998875
No 159
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.09 E-value=2.2e-06 Score=68.98 Aligned_cols=84 Identities=14% Similarity=0.066 Sum_probs=51.9
Q ss_pred Hhhcccccceecccc-cccC-----CchhhhccccCCeEeccCCccc-----cCCCCCccCCCCCEEEcCCCcCc-----
Q 014560 19 IASWTMLTELIASKN-LLNG-----MPETIGSLSRLIRLDLHQNRIL-----SIPSSISGCCSLAEFYMGNNALS----- 82 (422)
Q Consensus 19 ~~~~~~L~~L~l~~~-~i~~-----~~~~~~~~~~L~~L~l~~~~~~-----~l~~~~~~~~~L~~L~l~~~~i~----- 82 (422)
..+-+.|+.|+|+++ .|+. +.+++...+.|++|++++|.+. .+.+++...+.|++|+|++|.|+
T Consensus 37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ 116 (197)
T 1pgv_A 37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA 116 (197)
T ss_dssp HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence 444566777777664 5542 3445566667777777777665 33344556667777777777766
Q ss_pred cCchhhhCCCCCcEEEccCC
Q 014560 83 ALPAELGKLSKLGTLDLHSN 102 (422)
Q Consensus 83 ~l~~~l~~~~~L~~L~l~~~ 102 (422)
.+.+.+...+.|+.|+++++
T Consensus 117 ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 117 RLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHhhCCceeEEECCCC
Confidence 34455566666777777654
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.99 E-value=4.4e-06 Score=71.16 Aligned_cols=103 Identities=24% Similarity=0.225 Sum_probs=67.2
Q ss_pred hhhccccCCe--EeccCCccccCCCC----CccCCCCCEEEcCCCcCccC---chhhhCCCCCcEEEccCCccccccccc
Q 014560 41 TIGSLSRLIR--LDLHQNRILSIPSS----ISGCCSLAEFYMGNNALSAL---PAELGKLSKLGTLDLHSNQLKEYCVEA 111 (422)
Q Consensus 41 ~~~~~~~L~~--L~l~~~~~~~l~~~----~~~~~~L~~L~l~~~~i~~l---~~~l~~~~~L~~L~l~~~~~~~l~~~~ 111 (422)
.+...+.|+. ++++.|....++.. ..++++|++|+|++|.++.+ +..+..+++|+.|++++|.+.++....
T Consensus 136 ~l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~ 215 (267)
T 3rw6_A 136 GLRSDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD 215 (267)
T ss_dssp TGGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred HcCCCcchhhcCccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence 3555556665 66666654433322 25678888888888888754 355677888888888888888663322
Q ss_pred ccc--eecEEEcCCCCCCC-CC-------ccccccCCccEEE
Q 014560 112 CQL--RLSVLDLSNNSLSG-LP-------PEIGKMTTLRKLL 143 (422)
Q Consensus 112 ~~~--~L~~L~l~~~~~~~-~~-------~~~~~l~~L~~L~ 143 (422)
.-. .|++|++++|.+.. ++ ..+..+++|+.||
T Consensus 216 ~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LD 257 (267)
T 3rw6_A 216 KIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKLLRLD 257 (267)
T ss_dssp GGTTSCCSEEECTTSTTGGGCSSHHHHHHHHHHHCTTCCEES
T ss_pred hcccCCcceEEccCCcCccccCcchhHHHHHHHHCcccCeEC
Confidence 222 58888888888764 33 1255677777763
No 161
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.81 E-value=3.9e-06 Score=66.21 Aligned_cols=82 Identities=15% Similarity=0.049 Sum_probs=44.3
Q ss_pred CCccEEeCCCCcccc-CCccccCCCCCcEEEecCC-cCCCCChHHHhc----CCCCCEEECCCCC-CCcCCCCCCCCCCC
Q 014560 219 GEITKLDLSRNSIQE-LPPELSSCASLQTLILSRN-KIKDWPDAILTS----LSSLSCLKLDNNP-LRQVPSDGFKDIPM 291 (422)
Q Consensus 219 ~~L~~L~l~~~~l~~-~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~----~~~L~~L~l~~~~-~~~~~~~~~~~~~~ 291 (422)
..|+.|++++|.++. .-..+..+++|++|++++| .+++.....+.. +++|++|++++|. ++...-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 357777777776654 2233566777777777777 355533333333 2356677776653 44322222334455
Q ss_pred ccEEEccCC
Q 014560 292 LQILDLSYN 300 (422)
Q Consensus 292 L~~l~l~~~ 300 (422)
|+.|++++|
T Consensus 141 L~~L~L~~c 149 (176)
T 3e4g_A 141 LKYLFLSDL 149 (176)
T ss_dssp CCEEEEESC
T ss_pred CCEEECCCC
Confidence 555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.77 E-value=1.7e-05 Score=63.91 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=79.2
Q ss_pred hhhhccccCCeEeccCC-ccc-----cCCCCCccCCCCCEEEcCCCcCc-----cCchhhhCCCCCcEEEccCCcccc--
Q 014560 40 ETIGSLSRLIRLDLHQN-RIL-----SIPSSISGCCSLAEFYMGNNALS-----ALPAELGKLSKLGTLDLHSNQLKE-- 106 (422)
Q Consensus 40 ~~~~~~~~L~~L~l~~~-~~~-----~l~~~~~~~~~L~~L~l~~~~i~-----~l~~~l~~~~~L~~L~l~~~~~~~-- 106 (422)
..+.+.+.|++|+++++ .+. .+-+++...+.|++|+|++|.+. .+.+.+...+.|++|+|++|.+.+
T Consensus 35 ~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~G 114 (197)
T 1pgv_A 35 RLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPEL 114 (197)
T ss_dssp HHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHH
T ss_pred HHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHH
Confidence 33456788999999885 665 34455677889999999999887 556667788999999999998872
Q ss_pred ---cccccccce-ecEEEcCCCCC---CC-----CCccccccCCccEEEcCCCcc
Q 014560 107 ---YCVEACQLR-LSVLDLSNNSL---SG-----LPPEIGKMTTLRKLLLTGNPL 149 (422)
Q Consensus 107 ---l~~~~~~~~-L~~L~l~~~~~---~~-----~~~~~~~l~~L~~L~l~~~~~ 149 (422)
+...+...+ |+.|+++++.. .. +...+..-+.|+.|+++.+.+
T Consensus 115 a~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 115 LARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 334443333 99999986533 22 334466678899999887654
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.62 E-value=0.00024 Score=53.38 Aligned_cols=55 Identities=40% Similarity=0.633 Sum_probs=39.8
Q ss_pred EEECCCCCCc--ccCccCcCCCCCCEEeCCCCCCcccCCccccCCccccEEEccCCCCC
Q 014560 341 ILDLSQNSLQ--SIPEGFKNLTSLTELDLSDNNISALPPELGLLEPSLQALRLDGNPLR 397 (422)
Q Consensus 341 ~l~l~~n~l~--~l~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~L~~l~l~~n~~~ 397 (422)
.++.++++++ .+|..+. ++++.|+|++|+|+.++...+...++|+.|++.+|++.
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 6677777777 6776543 36778888888888777776665577888888888765
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.56 E-value=0.0054 Score=45.84 Aligned_cols=54 Identities=26% Similarity=0.501 Sum_probs=29.2
Q ss_pred EEeCCCCccc--cCCccccCCCCCcEEEecCCcCCCCChHHHhcCCCCCEEECCCCCC
Q 014560 223 KLDLSRNSIQ--ELPPELSSCASLQTLILSRNKIKDWPDAILTSLSSLSCLKLDNNPL 278 (422)
Q Consensus 223 ~L~l~~~~l~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 278 (422)
.++.++..++ .+|..+. ++|+.|++++|.++.++...|..+++|+.|++.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 4455555554 4553322 3456666666666666555555555666666555543
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=90.79 E-value=0.68 Score=32.37 Aligned_cols=44 Identities=9% Similarity=0.145 Sum_probs=19.2
Q ss_pred CCCCChHHHhcCCCCCEEECCCCCCCcCCCCCCCCCCCccEEEcc
Q 014560 254 IKDWPDAILTSLSSLSCLKLDNNPLRQVPSDGFKDIPMLQILDLS 298 (422)
Q Consensus 254 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~l~l~ 298 (422)
++.+...+|.+|.+|+.+.+.. .++.+...+|..|.+|+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~-~v~~Ig~~aF~~C~~L~~i~~~ 51 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQP-NIGLLYDGMFSGCTALEKLILT 51 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECT-TSSCCCTTSSTTCTTCCCEEEC
T ss_pred cCEecHHHhcCCCCCcEEEcCC-chheEcHHHHhccCCccEEEEc
Confidence 3334444444444444444443 2334444444444444444443
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=89.92 E-value=0.71 Score=32.27 Aligned_cols=48 Identities=19% Similarity=0.226 Sum_probs=37.6
Q ss_pred CCCCcCCCCCCCCCCCccEEEccCCcCCCCCCCCCCCCccCceEEeCCC
Q 014560 276 NPLRQVPSDGFKDIPMLQILDLSYNIASLPENPPFSSLPHLQELYLRRM 324 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 324 (422)
..++.+...+|..|.+|+.+.+..+ ++.+....|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 4567788888889999999999865 56666677888888888888764
Done!