BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014561
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R8L|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis
pdb|1R8L|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis
pdb|1UR0|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR0|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR4|A Chain A, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|1UR4|B Chain B, The Structure Of Endo-Beta-1,4-Galactanase From Bacillus
Licheniformis In Complex With Two Oligosaccharide
Products.
pdb|2CCR|A Chain A, Structure Of Beta-1,4-Galactanase
pdb|2CCR|B Chain B, Structure Of Beta-1,4-Galactanase
pdb|2J74|A Chain A, Structure Of Beta-1,4-Galactanase
pdb|2J74|B Chain B, Structure Of Beta-1,4-Galactanase
Length = 399
Score = 32.0 bits (71), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 292 SLTVEKRVEVERLSHFRKDFAMEVNVRELL-LKHPGIFYISTKGGTQTVF--LREA 344
S T + + VE++S RKDF V+V ++ L+ G+ + + G Q +F L+EA
Sbjct: 5 SGTAKSGLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEA 60
>pdb|2GFT|A Chain A, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
pdb|2GFT|B Chain B, Crystal Structure Of The E263a Nucleophile Mutant Of
Bacillus Licheniformis Endo-beta-1,4-galactanase In
Complex With Galactotriose
Length = 399
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 292 SLTVEKRVEVERLSHFRKDFAMEVNVRELL-LKHPGIFYISTKGGTQTVF--LREA 344
S T + + VE++S RKDF V+V ++ L+ G+ + + G Q +F L+EA
Sbjct: 5 SGTAKSGLYVEKVSGLRKDFIKGVDVSSIIALEESGVAFYNESGKKQDIFKTLKEA 60
>pdb|3BLV|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
pdb|3BLV|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate Bound In The
Regulatory Subunits
Length = 354
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 267 VVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKH 324
V+R T G F E +V V E SL V R + ER++ F DFA + N + + H
Sbjct: 127 VIRENTEGEFSGLEHESVPGVVE--SLKVXTRPKTERIARFAFDFAKKYNRKSVTAVH 182
>pdb|3BLW|A Chain A, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|C Chain C, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|E Chain E, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|G Chain G, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|I Chain I, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|K Chain K, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|M Chain M, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLW|O Chain O, Yeast Isocitrate Dehydrogenase With Citrate And Amp Bound
In The Regulatory Subunits
pdb|3BLX|A Chain A, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|C Chain C, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|E Chain E, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|G Chain G, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|I Chain I, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|K Chain K, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|M Chain M, Yeast Isocitrate Dehydrogenase (Apo Form)
pdb|3BLX|O Chain O, Yeast Isocitrate Dehydrogenase (Apo Form)
Length = 349
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 267 VVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKH 324
V+R T G F E +V V E SL V R + ER++ F DFA + N + + H
Sbjct: 127 VIRENTEGEFSGLEHESVPGVVE--SLKVMTRPKTERIARFAFDFAKKYNRKSVTAVH 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.140 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,568,021
Number of Sequences: 62578
Number of extensions: 481230
Number of successful extensions: 1069
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 1068
Number of HSP's gapped (non-prelim): 11
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)