Query 014561
Match_columns 422
No_of_seqs 150 out of 193
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 06:20:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014561.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014561hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11955 PORR: Plant organelle 100.0 1E-115 2E-120 876.4 30.2 329 40-374 1-334 (335)
2 PF11955 PORR: Plant organelle 98.7 6.7E-08 1.5E-12 98.3 9.0 136 133-332 11-152 (335)
3 PLN03196 MOC1-like protein; Pr 89.0 0.28 6.2E-06 52.7 2.9 217 85-334 132-374 (487)
4 PLN03196 MOC1-like protein; Pr 62.4 15 0.00032 39.7 5.8 220 86-339 169-414 (487)
5 PF12872 OST-HTH: OST-HTH/LOTU 27.6 1.1E+02 0.0024 23.6 4.2 54 61-114 9-71 (74)
6 PF04340 DUF484: Protein of un 26.6 54 0.0012 31.4 2.7 44 91-136 9-61 (225)
7 PRK06264 cbiC precorrin-8X met 19.6 1.6E+02 0.0035 28.8 4.4 58 227-298 152-209 (210)
8 PF03819 MazG: MazG nucleotide 17.4 76 0.0017 25.1 1.4 21 84-104 48-74 (74)
9 PF04530 Viral_Beta_CD: Viral 17.0 98 0.0021 28.0 2.1 25 232-257 92-116 (122)
10 PRK08202 purine nucleoside pho 14.5 6.7E+02 0.015 24.9 7.6 49 322-373 59-107 (272)
No 1
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=100.00 E-value=1e-115 Score=876.37 Aligned_cols=329 Identities=45% Similarity=0.762 Sum_probs=317.7
Q ss_pred ccCcchhhHHHHhhhhhHHHHHHHHHHhcCCCCCcchHHHHHhhhhccCCc-chHhhHhhhCCcceEeeccCCCCCcccc
Q 014561 40 RTRDHQLDKLATKLRTLRTILNTHRLMSTRKRGPFVSVQIMSRWKNILGLN-ITMGNFLHKYPHVFHLFTHPLNKNLCCR 118 (422)
Q Consensus 40 r~rd~~lD~~i~~~k~lr~v~~lk~li~s~p~~~~l~l~~L~k~r~~Lgl~-~~v~~FLrkyP~iF~~~~~p~~~~~~~r 118 (422)
|+||++||++|+++|++|+|++|+++|+++|+ +++|++.|+++++.||++ .++++||+|||+||++|.||..+++||+
T Consensus 1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~-~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~ 79 (335)
T PF11955_consen 1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPS-HSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFR 79 (335)
T ss_pred CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCC-CcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEE
Confidence 68999999999999999999999999999986 699999999999999996 7999999999999999999899999999
Q ss_pred ccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCChhhhhcccccCCCCeEeec----CCc
Q 014561 119 FTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVD----LEI 194 (422)
Q Consensus 119 LT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~ll~kyP~~Frlv~----~~~ 194 (422)
|||+|++|++||++|++++++++|++|+||||||.+++|||++|+|++||||||+||+++++++|||+|+||+ ..+
T Consensus 80 LT~~a~~L~~eE~~~~~~~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~~ 159 (335)
T PF11955_consen 80 LTPEAEDLLREERRVREEMEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGRY 159 (335)
T ss_pred eCHHHHHHHHHHHHHHHhChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCCE
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998 368
Q ss_pred eEEeccCCCcchhHHHhhhHHHHHHhhhcccCccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCC
Q 014561 195 VELVNSDKNLGDALVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCG 274 (422)
Q Consensus 195 LeLv~Wd~~LAVs~lE~~~~~e~~ek~~~~~~~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~ 274 (422)
||||+|||+||||++|++++.++++++......+++|||+||+||++++++++|+++||+|||+|||+|++++++
T Consensus 160 LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~----- 234 (335)
T PF11955_consen 160 LELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDP----- 234 (335)
T ss_pred EEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCC-----
Confidence 999999999999999999987655555556678999999999999999999999999999999999999999987
Q ss_pred CchhhhhHHHHHHHHHhhccchhhhhhhhHHhhhhhcCCcHHHHHHHhhCCCcEEEEeeCCeeEEEEeeccCCCCccCCC
Q 014561 275 GFERFEKRAVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLLKHPGIFYISTKGGTQTVFLREAYSRGCLIEPN 354 (422)
Q Consensus 275 ~s~~~EKRaVaVlHELLSLTveKr~~v~~L~~fr~efgLp~k~~~~l~rHPgIFYvS~kg~~~TVfLREAY~~g~Liek~ 354 (422)
+|+++|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||
T Consensus 235 ~s~~~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~ 314 (335)
T PF11955_consen 235 GSDEAEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKH 314 (335)
T ss_pred CChHHHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHhcccch
Q 014561 355 PIYVVRRKMLDLVLLGCRNT 374 (422)
Q Consensus 355 PL~~iR~K~~~Lm~~g~r~~ 374 (422)
||+.+|+||++||..|++++
T Consensus 315 Pl~~~r~k~~~Lm~~~~~~~ 334 (335)
T PF11955_consen 315 PLVVIREKFLELMQEGRRKR 334 (335)
T ss_pred chHHHHHHHHHHHhhccccc
Confidence 99999999999999999875
No 2
>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts. It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].
Probab=98.67 E-value=6.7e-08 Score=98.28 Aligned_cols=136 Identities=27% Similarity=0.435 Sum_probs=105.2
Q ss_pred HHHhChHHHHHHHHHHhhcCCCCcccHHHHHHHHHhcCCChhhhhcccccCCCCeEeecC-----CceEEeccCCCcchh
Q 014561 133 VIRRCESDAVIRIKKLLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRLVDL-----EIVELVNSDKNLGDA 207 (422)
Q Consensus 133 v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~ll~kyP~~Frlv~~-----~~LeLv~Wd~~LAVs 207 (422)
+..+.....|.+|+.+|.-++++.||++.+...+..|||+.-=..+++.+||..|.+... ....|.. .
T Consensus 11 i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~LT~-------~ 83 (335)
T PF11955_consen 11 IEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRLTP-------E 83 (335)
T ss_pred HHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEeCH-------H
Confidence 444556788999999999999999999999999999999522235799999999999763 2333311 1
Q ss_pred HHHhhhHHHHHHhhhcccCccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHH
Q 014561 208 LVEKWRENEYREKWLSEFETNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVV 287 (422)
Q Consensus 208 ~lE~~~~~e~~ek~~~~~~~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVl 287 (422)
|.+...+ | .. + ..+.|--+|..+
T Consensus 84 a~~L~~e----E--------------------------~~-------------------~--------~~~~e~~~v~rL 106 (335)
T PF11955_consen 84 AEDLLRE----E--------------------------RR-------------------V--------REEMEPDLVERL 106 (335)
T ss_pred HHHHHHH----H--------------------------HH-------------------H--------HHhChHHHHHHH
Confidence 1111000 0 00 1 124567889999
Q ss_pred HHHhhccchhhhhhhhHHhhhhhcCCcHHHHHHHh-hCCCcEEEEe
Q 014561 288 HELLSLTVEKRVEVERLSHFRKDFAMEVNVRELLL-KHPGIFYIST 332 (422)
Q Consensus 288 HELLSLTveKr~~v~~L~~fr~efgLp~k~~~~l~-rHPgIFYvS~ 332 (422)
.-||.|+..+|+.+++|.|++.+||||..|..-++ +||+.|=|..
T Consensus 107 ~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~ 152 (335)
T PF11955_consen 107 RKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVD 152 (335)
T ss_pred HHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEee
Confidence 99999999999999999999999999999988855 9999999988
No 3
>PLN03196 MOC1-like protein; Provisional
Probab=89.04 E-value=0.28 Score=52.67 Aligned_cols=217 Identities=15% Similarity=0.243 Sum_probs=107.7
Q ss_pred hccCCcc-hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHH
Q 014561 85 NILGLNI-TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALR 163 (422)
Q Consensus 85 ~~Lgl~~-~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~ 163 (422)
..+|++. .+...|.+||.|..--.+ ..|.|...-|- ...+-.+.-..++.+--.||-++.++.|. .+++
T Consensus 132 ~~lG~s~~~i~~lI~~~P~lL~~sve-------~~L~P~v~fL~--~lGvs~~~i~~~l~r~P~LL~~~~e~~l~-p~v~ 201 (487)
T PLN03196 132 EKLGVTRSSLPELLRRYPQVLHASVV-------VDLAPVVKYLQ--GLDVKRQDIPRVLERYPELLGFKLEGTMS-TSVA 201 (487)
T ss_pred HHcCCCHHHHHHHHHhCCceecccHH-------HHHHHHHHHHH--HcCCCHHHHHHHHHhCchhhcCCHHHHHH-HHHH
Confidence 4678875 778889999998853221 23444444331 11111112233334444556666555443 4455
Q ss_pred HHHHhcCCChhhhhcccccCCCCeEee-cC-----------------CceEEeccCCCcchhHHHhhhH--HHH-HHhhh
Q 014561 164 LIRTELGLPEDFRDSILGKYGNDFRLV-DL-----------------EIVELVNSDKNLGDALVEKWRE--NEY-REKWL 222 (422)
Q Consensus 164 ~lr~dLGLP~DF~~~ll~kyP~~Frlv-~~-----------------~~LeLv~Wd~~LAVs~lE~~~~--~e~-~ek~~ 222 (422)
.++ ++|++.+=..+++.+||+.+... +. ....++...|.+--..+|.+-. -++ .+-++
T Consensus 202 fL~-~lGvs~~~i~~il~~~P~iL~~sve~~i~P~v~fL~~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv 280 (487)
T PLN03196 202 YLV-SIGVAPRDIGPMLTRFPEILGMRVGNNIKPKVDYLESLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGV 280 (487)
T ss_pred HHH-HcCCCHHHHHHHHHhCcHHhhcChhhhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCC
Confidence 554 56777666666777777766532 10 1122222333322222332110 011 11111
Q ss_pred cccCcccccc-ccCCC--CCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHHHHHhhccchhhh
Q 014561 223 SEFETNFAFP-INFPT--GFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRV 299 (422)
Q Consensus 223 ~~~~~~~~Fp-~~fP~--Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVlHELLSLTveKr~ 299 (422)
.. ..+++- ..+|. |+.++++....+.-+++ .-++. ++.=.++|.-+-.+|++..+|
T Consensus 281 ~~--~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~---------~lG~s--------~e~i~~~v~k~P~il~lSe~k-- 339 (487)
T PLN03196 281 RK--EALPSVIAQYPDILGLDLKAKLAEQQYWLTS---------KLKID--------PEDFGRVIEKLPQIVSLNRNV-- 339 (487)
T ss_pred CH--HHHHHHHHhCCceeEecHHHhhhHHHHHHHH---------hhCCC--------HHHHHHHHHhcchhhcccHHH--
Confidence 11 111221 13332 22234444333322221 11222 111134555566788888764
Q ss_pred hhhhHHhhhhhcCCcHH-HHHHHhhCCCcEEEEeeC
Q 014561 300 EVERLSHFRKDFAMEVN-VRELLLKHPGIFYISTKG 334 (422)
Q Consensus 300 ~v~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~kg 334 (422)
...++..|++ +|++.+ +..|+.++|.++-.|.+.
T Consensus 340 l~~kvefL~~-~Gls~edI~~mv~k~P~lL~~S~~~ 374 (487)
T PLN03196 340 ALKHVEFLRG-RGFSAQDVAKMVVRCPQILALNLEI 374 (487)
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHhCCceeeccHHH
Confidence 3467888875 999955 889999999999999853
No 4
>PLN03196 MOC1-like protein; Provisional
Probab=62.43 E-value=15 Score=39.74 Aligned_cols=220 Identities=14% Similarity=0.176 Sum_probs=111.1
Q ss_pred ccCCc-chHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHHH
Q 014561 86 ILGLN-ITMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALRL 164 (422)
Q Consensus 86 ~Lgl~-~~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~~ 164 (422)
.+|++ ..+.+.+.+||.++..-.+. .+.+...-|. +..+-.+.-..++.+--.||.+|.++.|- .+++-
T Consensus 169 ~lGvs~~~i~~~l~r~P~LL~~~~e~-------~l~p~v~fL~--~lGvs~~~i~~il~~~P~iL~~sve~~i~-P~v~f 238 (487)
T PLN03196 169 GLDVKRQDIPRVLERYPELLGFKLEG-------TMSTSVAYLV--SIGVAPRDIGPMLTRFPEILGMRVGNNIK-PKVDY 238 (487)
T ss_pred HcCCCHHHHHHHHHhCchhhcCCHHH-------HHHHHHHHHH--HcCCCHHHHHHHHHhCcHHhhcChhhhHH-HHHHH
Confidence 57886 47899999999987532211 1233332221 11111222234455555688888877553 55666
Q ss_pred HHHhcCCChhhhhcccccCCCCeEee-cC------C-----------ceEEeccCCCcchhHHHhhhH--HHHHHhhhcc
Q 014561 165 IRTELGLPEDFRDSILGKYGNDFRLV-DL------E-----------IVELVNSDKNLGDALVEKWRE--NEYREKWLSE 224 (422)
Q Consensus 165 lr~dLGLP~DF~~~ll~kyP~~Frlv-~~------~-----------~LeLv~Wd~~LAVs~lE~~~~--~e~~ek~~~~ 224 (422)
++ ++|++.+=...++.++|.+|... +. . .-.++...|.+-...+|+..+ .++..+.++-
T Consensus 239 L~-~lGv~~~~I~~il~~~P~iL~~sle~~lkp~v~~L~elGv~~~~i~~lI~~~P~iL~~s~e~kl~~~~~fL~~~lG~ 317 (487)
T PLN03196 239 LE-SLGLPRLAVARILEKRPYILGFDLEETVKPNVECLLEFGVRKEALPSVIAQYPDILGLDLKAKLAEQQYWLTSKLKI 317 (487)
T ss_pred HH-HcCCCHHHHHHHHHhCCceeEcCHHHhHHHHHHHHHHcCCCHHHHHHHHHhCCceeEecHHHhhhHHHHHHHHhhCC
Confidence 65 79998887778889999998754 10 0 111222333322222332211 1111110100
Q ss_pred cCcccc-ccccCCCCCccch-hhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHHHHHhhccchhhhhhh
Q 014561 225 FETNFA-FPINFPTGFKIER-GFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKRVEVE 302 (422)
Q Consensus 225 ~~~~~~-Fp~~fP~Gf~l~k-~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVlHELLSLTveKr~~v~ 302 (422)
....+. +-.++|.=+.+.. +...+++=++++ |+. .+.=-++|.-.=-+|++.+ .....
T Consensus 318 s~e~i~~~v~k~P~il~lSe~kl~~kvefL~~~----------Gls--------~edI~~mv~k~P~lL~~S~--~~l~~ 377 (487)
T PLN03196 318 DPEDFGRVIEKLPQIVSLNRNVALKHVEFLRGR----------GFS--------AQDVAKMVVRCPQILALNL--EIMKP 377 (487)
T ss_pred CHHHHHHHHHhcchhhcccHHHHHHHHHHHHHc----------CCC--------HHHHHHHHHhCCceeeccH--HHHHH
Confidence 000111 1112332111111 122222211111 221 1111122333335677776 55678
Q ss_pred hHHhhhhhcCCcHHHHHHHhhCCCcEEEEeeCC---eeEE
Q 014561 303 RLSHFRKDFAMEVNVRELLLKHPGIFYISTKGG---TQTV 339 (422)
Q Consensus 303 ~L~~fr~efgLp~k~~~~l~rHPgIFYvS~kg~---~~TV 339 (422)
++.-|.+++|.| .+.+.++|.+|-.|+... ||.|
T Consensus 378 k~dFlvneMg~~---~~~Iv~fP~~LsySLEkRI~PR~~~ 414 (487)
T PLN03196 378 SLEFFKKEMKRP---LKELVEFPAYFTYGLESRIKPRYER 414 (487)
T ss_pred HHHHHHHHhCCC---HHHHHhChHHhccChhhhhHHHHHH
Confidence 899999999999 556899999999998765 5665
No 5
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=27.64 E-value=1.1e+02 Score=23.60 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=30.5
Q ss_pred HHHHHHhcCCC-CCcchHHHHHhhhh-cc-CCc------chHhhHhhhCCcceEeeccCCCCC
Q 014561 61 NTHRLMSTRKR-GPFVSVQIMSRWKN-IL-GLN------ITMGNFLHKYPHVFHLFTHPLNKN 114 (422)
Q Consensus 61 ~lk~li~s~p~-~~~l~l~~L~k~r~-~L-gl~------~~v~~FLrkyP~iF~~~~~p~~~~ 114 (422)
.|+++|.+.+. +..++++.+...-+ .. .|+ ..+..||...|++|++-..+..+.
T Consensus 9 ~l~~ll~~~~~~~g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~~~~i~~~~~g~~ 71 (74)
T PF12872_consen 9 LLRELLESQKGEDGWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPDVVEIEERQHGGQ 71 (74)
T ss_dssp HHHHHHHHTCTTTSSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TTTEEEEEEECCCC
T ss_pred HHHHHHHhCcCCCceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCCeEEEeeeCCCCc
Confidence 45566644432 22688877643322 22 332 278899999999999954444333
No 6
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=26.55 E-value=54 Score=31.41 Aligned_cols=44 Identities=14% Similarity=0.292 Sum_probs=14.0
Q ss_pred chHhhHhhhCCcceEeec---------cCCCCCccccccHHHHHHHHHHHHHHHh
Q 014561 91 ITMGNFLHKYPHVFHLFT---------HPLNKNLCCRFTPKMENLINEEVDVIRR 136 (422)
Q Consensus 91 ~~v~~FLrkyP~iF~~~~---------~p~~~~~~~rLT~~a~~L~~eE~~v~~~ 136 (422)
..|.+||+++|..|..+. ||.++ -+.|.+...+.++++-+-+++
T Consensus 9 ~~V~~yL~~~PdFf~~~~~ll~~l~~ph~~~~--avSL~erQ~~~LR~~~~~L~~ 61 (225)
T PF04340_consen 9 EDVAAYLRQHPDFFERHPELLAELRLPHPSGG--AVSLVERQLERLRERNRQLEE 61 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcHHHHhCHHHHHHcCCCCCCCC--cccHHHHHHHHHHHHHHHHHH
Confidence 467889999999888763 33322 567777777777776665543
No 7
>PRK06264 cbiC precorrin-8X methylmutase; Validated
Probab=19.60 E-value=1.6e+02 Score=28.83 Aligned_cols=58 Identities=22% Similarity=0.429 Sum_probs=43.9
Q ss_pred ccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHHHHHhhccchhh
Q 014561 227 TNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSLTVEKR 298 (422)
Q Consensus 227 ~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVlHELLSLTveKr 298 (422)
.++++-+-.|-||-=-...+++|.+ +..|||. .. -+.|||. -|+|++|.|+.+..++|
T Consensus 152 ~~PalVIg~PVGFV~A~ESKe~L~~-~~vP~It----~~-----GrkGGS~----vAaAivNALl~~~~~~~ 209 (210)
T PRK06264 152 IKPKLVVGVPVGFVKAAESKEALRN-TNIPSIS----TI-----GPKGGTP----VAVSIINGIIALSKNER 209 (210)
T ss_pred CCCcEEEEeCCccccHHHHHHHHHh-CCCCEEE----Ee-----cCCCcHH----HHHHHHHHHHHHhccCC
Confidence 5678999999999977788899976 4566654 21 2345776 57999999999987765
No 8
>PF03819 MazG: MazG nucleotide pyrophosphohydrolase domain; InterPro: IPR004518 This domain is found in a group of prokaryotic proteins which includes Escherichia coli MazG. The domain is about 100 amino acid residues in length and contains four conserved negatively charged residues that probably form an active site or metal binding site.; PDB: 1VMG_A 2YXH_B 2OIE_B 2OIG_C 2Q4P_A 2A3Q_B 2Q9L_C 2Q5Z_B 2Q73_A 3CRC_B ....
Probab=17.37 E-value=76 Score=25.12 Aligned_cols=21 Identities=38% Similarity=0.819 Sum_probs=15.8
Q ss_pred hhccCCc------chHhhHhhhCCcce
Q 014561 84 KNILGLN------ITMGNFLHKYPHVF 104 (422)
Q Consensus 84 r~~Lgl~------~~v~~FLrkyP~iF 104 (422)
...+|++ .....+.+|||++|
T Consensus 48 ~~~~~idle~~~~~~~~K~~~R~p~~f 74 (74)
T PF03819_consen 48 EERLGIDLEEALERKMEKLERRYPHVF 74 (74)
T ss_dssp HCHTTSHHHHHHHHHHHHHHHHSGGGG
T ss_pred hHcCCCCHHHHHHHHHHHHhccCCCCC
Confidence 4457775 25677999999998
No 9
>PF04530 Viral_Beta_CD: Viral Beta C/D like family; InterPro: IPR007617 This is a family of ssRNA positive-strand viral proteins. Conserved region is found in the Beta C and Beta D transcripts.
Probab=16.98 E-value=98 Score=27.95 Aligned_cols=25 Identities=20% Similarity=0.606 Sum_probs=19.3
Q ss_pred cccCCCCCccchhhHHHHHhhhcCCC
Q 014561 232 PINFPTGFKIERGFREKLKNWQRLPY 257 (422)
Q Consensus 232 p~~fP~Gf~l~k~~~~~l~~fQ~LPy 257 (422)
.|++-+ --++-++-+.+..||+.||
T Consensus 92 eik~~~-~PIDP~VIaAIHHwQk~Pf 116 (122)
T PF04530_consen 92 EIKLAP-VPIDPEVIAAIHHWQKYPF 116 (122)
T ss_pred EEecCC-CCCCHHHHHHHHHHHhCCC
Confidence 444444 4478889999999999998
No 10
>PRK08202 purine nucleoside phosphorylase; Provisional
Probab=14.48 E-value=6.7e+02 Score=24.92 Aligned_cols=49 Identities=18% Similarity=0.213 Sum_probs=39.4
Q ss_pred hhCCCcEEEEeeCCeeEEEEeeccCCCCccCCCchHHHHHHHHHHHHhcccc
Q 014561 322 LKHPGIFYISTKGGTQTVFLREAYSRGCLIEPNPIYVVRRKMLDLVLLGCRN 373 (422)
Q Consensus 322 ~rHPgIFYvS~kg~~~TVfLREAY~~g~Liek~PL~~iR~K~~~Lm~~g~r~ 373 (422)
.=|-|-||.-.-++...||+. .+....|.++...++--...|...|.+.
T Consensus 59 ~gh~~~~~~G~l~g~~Vv~~~---g~~H~yeG~~~~~~~a~i~~l~~lGv~~ 107 (272)
T PRK08202 59 EGHAGELVLGRLGGKPVLAMQ---GRFHYYEGYSMEAVTFPVRVMKALGVET 107 (272)
T ss_pred cCCCceEEEEEECCEEEEEEc---cCCcccCCCCHHHHHHHHHHHHHcCCCE
Confidence 348899999988999999997 6667889899888876566777777766
Done!