BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014562
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1JM7|A Chain A, Solution Structure Of The Brca1/bard1 Ring-domain
Heterodimer
Length = 112
Score = 53.1 bits (126), Expect = 3e-07, Method: Composition-based stats.
Identities = 19/52 (36%), Positives = 34/52 (65%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>pdb|2LDR|A Chain A, Solution Structure Of Helix-Ring Domain Of Cbl-B In The
Tyr363 Phosphorylated Form
Length = 82
Score = 43.9 bits (102), Expect = 2e-04, Method: Composition-based stats.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W SD + CP C+ E +K PI
Sbjct: 29 CKICAENDKDVKIEPCGHLMCTSCLTAWQ--ESDGQGCPFCRCE--IKGTEPI 77
>pdb|2YSL|A Chain A, Solution Structure Of The Ring Domain (1-66) From
Tripartite Motif-containing Protein 31
Length = 73
Score = 43.1 bits (100), Expect = 3e-04, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 24/45 (53%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
C ICLD+ + PV CGH FC C+ + +CP+CK V
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67
>pdb|2K4D|A Chain A, E2-C-Cbl Recognition Is Necessary But Not Sufficient For
Ubiquitination Activity
Length = 83
Score = 41.6 bits (96), Expect = 8e-04, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 27 CKICAENDKDVKIEPCGHLMCTSCLTSWQ--ESEGQGCPFCRCE--IKGTEPI 75
>pdb|3VGO|A Chain A, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|B Chain B, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
pdb|3VGO|C Chain C, Crystal Structure Of The N-Terminal Fragment Of Cbl-B
Length = 394
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W SD + CP C+ E +K PI
Sbjct: 341 CKICAENDKDVKIEPCGHLMCTSCLTAW--QESDGQGCPFCRCE--IKGTEPI 389
>pdb|1RMD|A Chain A, Rag1 Dimerization Domain
Length = 116
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 19/42 (45%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
C IC + DPV T C HLFC C+ R L V CP C+
Sbjct: 26 CQICEHILADPVETSCKHLFCRICILRCLKVM--GSYCPSCR 65
>pdb|2YSJ|A Chain A, Solution Structure Of The Ring Domain (1-56) From
Tripartite Motif-containing Protein 31
Length = 63
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 22/41 (53%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
C ICLD+ + PV CGH FC C+ + +CP+C
Sbjct: 23 CPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>pdb|4A49|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b Complex
Length = 84
Score = 40.8 bits (94), Expect = 0.001, Method: Composition-based stats.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 30 CKICAENDKDVKIEPCGHLMCTSCLTSWQ--ESEGQGCPFCRCE--IKGTEPI 78
>pdb|2XEU|A Chain A, Ring Domain
Length = 64
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 138 CNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC+D R V T CGH+FC CL L +A CP C+ ++ K PI
Sbjct: 6 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHKRYHPI 62
Query: 191 Y 191
Y
Sbjct: 63 Y 63
>pdb|4AP4|A Chain A, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex
Length = 133
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 138 CNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC+D R V T CGH+FC CL L +A CP C+ ++ K PI
Sbjct: 10 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHKRYHPI 66
Query: 191 Y 191
Y
Sbjct: 67 Y 67
Score = 40.4 bits (93), Expect = 0.002, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 138 CNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC+D R V T CGH+FC CL L +A CP C+ ++ K PI
Sbjct: 75 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHKRYHPI 131
Query: 191 Y 191
Y
Sbjct: 132 Y 132
>pdb|4A4C|A Chain A, Structure Of Phosphotyr371-C-Cbl-Ubch5b-Zap-70 Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCE--IKGTEPI 385
>pdb|4A4B|A Chain A, Structure Of Modified Phosphotyr371-C-Cbl-Ubch5b-Zap-70
Complex
Length = 391
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 337 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCE--IKGTEPI 385
>pdb|1FBV|A Chain A, Structure Of A Cbl-Ubch7 Complex: Ring Domain Function In
Ubiquitin-Protein Ligases
Length = 388
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCE--IKGTEPI 383
>pdb|2Y1M|A Chain A, Structure Of Native C-Cbl
pdb|2Y1M|B Chain B, Structure Of Native C-Cbl
pdb|2Y1M|C Chain C, Structure Of Native C-Cbl
pdb|2Y1M|D Chain D, Structure Of Native C-Cbl
pdb|2Y1M|E Chain E, Structure Of Native C-Cbl
pdb|2Y1M|F Chain F, Structure Of Native C-Cbl
pdb|2Y1N|A Chain A, Structure Of C-Cbl-Zap-70 Peptide Complex
pdb|2Y1N|C Chain C, Structure Of C-Cbl-Zap-70 Peptide Complex
Length = 389
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + +D + CGHL C CL W S+ + CP C+ E +K PI
Sbjct: 335 CKICAENDKDVKIEPCGHLMCTSCLTSW--QESEGQGCPFCRCE--IKGTEPI 383
>pdb|3NG2|A Chain A, Crystal Structure Of The Rnf4 Ring Domain Dimer
pdb|3NG2|B Chain B, Crystal Structure Of The Rnf4 Ring Domain Dimer
Length = 71
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 10/61 (16%)
Query: 138 CNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC+D R V T CGH+FC CL L +A CP C+ ++ K PI
Sbjct: 13 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHKRYHPI 69
Query: 191 Y 191
Y
Sbjct: 70 Y 70
>pdb|2ECJ|A Chain A, Solution Structure Of The Ring Domain Of The Human
Tripartite Motif-Containing Protein 39
Length = 58
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178
C++CL+ ++PV+ CGH FC C+ RW CPVC
Sbjct: 18 CSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58
>pdb|2ECW|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Tripartite Motif Protein 30
Length = 85
Score = 37.7 bits (86), Expect = 0.012, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPC--LYRWLHVHSDAK-ECPVCKGEVTVKNITP 189
C ICL+L ++PV C H FC C L + ++D K CPVC+ N+ P
Sbjct: 22 CPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKP 76
>pdb|2CKL|B Chain B, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 165
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 138 CNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C ICLD+ ++ + T C H FC C+ L S KECP C+ ++ K
Sbjct: 57 CPICLDMLKNTMTTKECLHRFCADCIITALR--SGNKECPTCRKKLVSK 103
>pdb|2JMD|A Chain A, Solution Structure Of The Ring Domain Of Human Traf6
Length = 63
Score = 36.6 bits (83), Expect = 0.031, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
++C ICL R+ V T CGH FC C+ + + +CPV E+ ++N
Sbjct: 7 YECPICLMALREAVQTPCGHRFCKACIIK--SIRDAGHKCPV-DNEILLEN 54
>pdb|3HCT|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1
Space Group
pdb|3HCU|A Chain A, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
pdb|3HCU|C Chain C, Crystal Structure Of Traf6 In Complex With Ubc13 In The C2
Space Group
Length = 118
Score = 35.8 bits (81), Expect = 0.041, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
++C ICL R+ V T CGH FC C+ + + +CPV E+ ++N
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIK--SIRDAGHKCPV-DNEILLEN 66
>pdb|2ECI|A Chain A, Solution Structure Of The Ring Domain Of The Human Tnf
Receptor-Associated Factor 6 Protein
Length = 86
Score = 35.4 bits (80), Expect = 0.059, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
++C ICL R+ V T CGH FC C+ + + +CPV E+ ++N
Sbjct: 26 YECPICLMALREAVQTPCGHRFCKACIIK--SIRDAGHKCPV-DNEILLEN 73
>pdb|2ECN|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 141
Length = 70
Score = 35.4 bits (80), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Query: 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
+C IC+D D ++ C H FC C+ +W H + CP+C+ ++T N
Sbjct: 17 ECCICMDGRADLILPC-AHSFCQKCIDKWSDRH---RNCPICRLQMTGAN 62
>pdb|4EPO|C Chain C, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|G Chain G, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|H Chain H, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|K Chain K, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
pdb|4EPO|L Chain L, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2
HETERODIMER
Length = 149
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 3/55 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C IC + + V C H FC C+ W+ ECP+C+ ++ K + +
Sbjct: 65 LQCIICSEYFIEAVTLNCAHSFCSYCINEWM---KRKIECPICRKDIKSKTYSLV 116
>pdb|2H0D|B Chain B, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 100
Score = 35.0 bits (79), Expect = 0.071, Method: Composition-based stats.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 138 CNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C ICLD+ ++ + T C H FC C+ L S KECP C+ ++ K
Sbjct: 37 CPICLDMLKNTMTTKECLHRFCADCIITALR--SGNKECPTCRKKLVSK 83
>pdb|2D8T|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 146
Length = 71
Score = 35.0 bits (79), Expect = 0.079, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 7/48 (14%)
Query: 137 DCNICLDLSRDPVVTCCGHLFCWPCL--YRWLHVHSDAKECPVCKGEV 182
+C ICL PV C H+FC+ C+ WL K C +C+ E+
Sbjct: 17 ECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-----GKRCALCRQEI 59
>pdb|4AYC|A Chain A, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C IC + + V C H FC C+ W+ ECP+C+ ++ K
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWM---KRKIECPICRKDIKSK 100
>pdb|4AYC|B Chain B, Rnf8 Ring Domain Structure
Length = 138
Score = 34.7 bits (78), Expect = 0.11, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C IC + + V C H FC C+ W+ ECP+C+ ++ K
Sbjct: 54 LQCIICSEYFIEAVTLNCAHSFCSYCINEWM---KRKIECPICRKDIKSK 100
>pdb|3RPG|C Chain C, Bmi1RING1B-Ubch5c Complex Structure
Length = 121
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 138 CNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C ICLD+ ++ + T C H FC C+ L S KECP C+ ++ K
Sbjct: 56 CPICLDMLKNTMTTKECLHRFCADCIITALR--SGNKECPTCRKKLVSK 102
>pdb|2ECV|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Tripartite Motif-Containing Protein 5
Length = 85
Score = 33.9 bits (76), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCL---YRWLHVHSDAKECPVCKGEVTVKNITP 189
C ICL+L P+ CGH FC CL ++ + CPVC+ +NI P
Sbjct: 22 CPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRP 76
>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14,
An Armadillo Repeat Containing Protein From Arabidopsis
Thaliana
Length = 78
Score = 33.5 bits (75), Expect = 0.20, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
+F C I L+L +DPV+ G + + +WL + K CP + + +TP Y
Sbjct: 8 YFRCPISLELMKDPVIVSTGQTYERSSIQKWL--DAGHKTCPKSQETLLHAGLTPNY 62
>pdb|2EA6|A Chain A, Solution Structure Of The Ring Domain Of The Human Ring
Finger Protein 4
Length = 69
Score = 33.1 bits (74), Expect = 0.33, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 26/55 (47%), Gaps = 10/55 (18%)
Query: 138 CNICLD-------LSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C IC+D R V T CGH+FC CL L +A CP C+ ++ K
Sbjct: 18 CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSL---KNANTCPTCRKKINHK 69
>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
Protein 24
Length = 74
Score = 32.7 bits (73), Expect = 0.39, Method: Composition-based stats.
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 6/44 (13%)
Query: 138 CNICLD--LSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVC 178
C +CL+ RD + C C H F CL +WL V K CP+C
Sbjct: 18 CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVR---KVCPLC 58
>pdb|3ZTG|A Chain A, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
pdb|3ZTG|B Chain B, Solution Structure Of The Ring Finger-Like Domain Of
Retinoblastoma Binding Protein-6 (Rbbp6)
Length = 92
Score = 32.3 bits (72), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 138 CNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVC 178
C IC D+ D VV CCG+ +C C+ R + SD CP C
Sbjct: 16 CLICKDIMTDAVVIPCCGNSYCDECI-RTALLESDEHTCPTC 56
>pdb|3HCS|A Chain A, Crystal Structure Of The N-Terminal Domain Of Traf6
pdb|3HCS|B Chain B, Crystal Structure Of The N-Terminal Domain Of Traf6
Length = 170
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
++C ICL R+ V T CGH FC C+ + + +CPV E+ ++N
Sbjct: 19 YECPICLMALREAVQTPCGHRFCKACIIKS--IRDAGHKCPV-DNEILLEN 66
>pdb|2CSY|A Chain A, Solution Structure Of The Ring Domain Of The Zinc Finger
Protein 183-Like 1
Length = 81
Score = 31.6 bits (70), Expect = 0.91, Method: Composition-based stats.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPC 161
F C IC ++PVVT C H FC C
Sbjct: 16 FRCFICRQAFQNPVVTKCRHYFCESC 41
>pdb|2YUR|A Chain A, Solution Structure Of The Ring Finger Of Human
Retinoblastoma-Binding Protein 6
Length = 74
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 138 CNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCK 179
C IC D+ D VV CCG+ +C C+ L + SD CP C
Sbjct: 18 CLICKDIMTDAVVIPCCGNSYCDECIRTAL-LESDEHTCPTCH 59
>pdb|2EGP|A Chain A, Solution Structure Of The Ring-Finger Domain From Human
Tripartite Motif Protein 34
Length = 79
Score = 31.2 bits (69), Expect = 1.3, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLY----RWLHVHSDAKECPVC 178
C ICL+L +P+ CGH C C+ + CPVC
Sbjct: 15 CPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVC 59
>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5
Length = 55
Score = 30.8 bits (68), Expect = 1.6, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 137 DCNICL----DLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184
+C +CL D + CGH F C+ WL HS CP+C+ V V
Sbjct: 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHS---TCPLCRLTVVV 55
>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain
Length = 69
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 14/55 (25%)
Query: 138 CNICL-------DLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185
C ICL D+ R P C HLF C+ +WL + K+CP+C+ ++ +
Sbjct: 17 CTICLSILEEGEDVRRLP----CMHLFHQVCVDQWLITN---KKCPICRVDIEAQ 64
>pdb|2H0D|A Chain A, Structure Of A Bmi-1-Ring1b Polycomb Group Ubiquitin
Ligase Complex
Length = 97
Score = 30.4 bits (67), Expect = 2.0, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 153 CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C H FC C+ R+L +K CP+C +V V P+
Sbjct: 30 CLHSFCKTCIVRYLET---SKYCPIC--DVQVHKTRPL 62
>pdb|3FL2|A Chain A, Crystal Structure Of The Ring Domain Of The E3 Ubiquitin-
Protein Ligase Uhrf1
Length = 124
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 29/73 (39%), Gaps = 16/73 (21%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV------------- 182
F C C +L P+ T C H C CL R + CP C+ ++
Sbjct: 53 FQCICCQELVFRPITTVCQHNVCKDCLDR--SFRAQVFSCPACRYDLGRSYAMQVNQPLQ 110
Query: 183 TVKN-ITPIYGRG 194
TV N + P YG G
Sbjct: 111 TVLNQLFPGYGNG 123
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 30.0 bits (66), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 196
C IC+++ +PV C H C PC V + CP C+ V+ + T + R NS
Sbjct: 17 QCGICMEILVEPVTLPCNHTLCKPCFQS--TVEKASLCCPFCRRRVS--SWTRYHTRRNS 72
>pdb|3RPG|B Chain B, Bmi1RING1B-Ubch5c Complex Structure
Length = 117
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 153 CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C H FC C+ R+L +K CP+C +V V P+
Sbjct: 34 CLHSFCKTCIVRYLET---SKYCPIC--DVQVHKTRPL 66
>pdb|2CKL|A Chain A, Ring1b-Bmi1 E3 Catalytic Domain Structure
Length = 108
Score = 30.0 bits (66), Expect = 2.7, Method: Composition-based stats.
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 153 CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C H FC C+ R+L +K CP+C +V V P+
Sbjct: 34 CLHSFCKTCIVRYLET---SKYCPIC--DVQVHKTRPL 66
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 14/49 (28%)
Query: 138 CNICLDLSRDPVVTCCGHLF----CWPCLYRWLHVHSDAKECPVCKGEV 182
C +C+D V CGHL C P L ++CP+C+G +
Sbjct: 298 CKVCMDKEVSVVFIPCGHLVVCQECAPSL----------RKCPICRGII 336
>pdb|2DJB|A Chain A, Solution Structure Of The Ring Domain Of The Human
Polycomb Group Ring Finger Protein 6
Length = 72
Score = 29.3 bits (64), Expect = 4.9, Method: Composition-based stats.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 138 CNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192
C+IC D +T C H FC C+ R + + CP C + V P+ G
Sbjct: 18 CSICKGYLIDATTITECLHTFCKSCIVRHFYY---SNRCPKCN--IVVHQTQPLSG 68
>pdb|1Z6U|A Chain A, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
pdb|1Z6U|B Chain B, Np95-Like Ring Finger Protein Isoform B [homo Sapiens]
Length = 150
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
F C C +L PV T C H C CL R + CP C+ ++
Sbjct: 79 FMCVCCQELVYQPVTTECFHNVCKDCLQR--SFKAQVFSCPACRHDL 123
>pdb|2CT2|A Chain A, Solution Structure Of The Ring Domain Of The Tripartite
Motif Protein 32
Length = 88
Score = 28.9 bits (63), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 26/59 (44%), Gaps = 4/59 (6%)
Query: 136 FDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
+C IC++ + P + CGH C CL + L + CP C + ++T +
Sbjct: 16 LECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSLTQL 74
>pdb|1CHC|A Chain A, Structure Of The C3hc4 Domain By 1h-Nuclear Magnetic
Resonance Spectroscopy; A New Structural Class Of Zinc-
Finger
Length = 68
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 138 CNICL-DLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
C ICL D S + C H FC+ C+ RW+ CP+CK V
Sbjct: 8 CPICLEDPSNYSMALPCLHAFCYVCITRWIR---QNPTCPLCKVPV 50
>pdb|2ECY|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger)" Domain Of Tnf Receptor-Associated Factor 3
Length = 66
Score = 28.5 bits (62), Expect = 8.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
+ C C + P T CGH FC C+ L S + +C C+ E VK+
Sbjct: 16 YKCEKCHLVLCSPKQTECGHRFCESCMAALL--SSSSPKCTACQ-ESIVKD 63
>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring
Finger) Domain Of Ring Finger Protein 126
Length = 78
Score = 28.5 bits (62), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 153 CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
C HLF C+ WL H CPVC+ +T +N
Sbjct: 36 CNHLFHDSCIVPWLEQH---DSCPVCRKSLTGQN 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,150,311
Number of Sequences: 62578
Number of extensions: 366148
Number of successful extensions: 757
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 27
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 60
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)