BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014562
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8GUK7|RMA3_ARATH E3 ubiquitin-protein ligase RMA3 OS=Arabidopsis thaliana GN=RMA3
PE=1 SV=1
Length = 243
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 48/117 (41%), Positives = 66/117 (56%), Gaps = 13/117 (11%)
Query: 109 NNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV 168
++ GF+ + G N+ FDCNICLD + DPVVT CGHLFCWPC+Y+WLHV
Sbjct: 15 HDNGFIAKQKPNLTTAPTAGQANESGCFDCNICLDTAHDPVVTLCGHLFCWPCIYKWLHV 74
Query: 169 HSDA-------KECPVCKGEVTVKNITPIYGRGNST------REPEEDSSLKIPLRP 212
+ CPVCK +T+ ++ P+YGRG S+ + ++ S IP RP
Sbjct: 75 QLSSVSVDQHQNNCPVCKSNITITSLVPLYGRGMSSPSSTFGSKKQDALSTDIPRRP 131
>sp|Q99942|RNF5_HUMAN E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens GN=RNF5 PE=1 SV=1
Length = 180
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 7/103 (6%)
Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
+E++D +G G G+ F+CNICL+ +R+ VV+ CGHL+CWPCL++WL + +
Sbjct: 3 AAEEEDGGPEGPNRERGGAGATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPERQ 62
Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
ECPVCK ++ + + P+YGRG+ +D LK P RPQG+R
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102
>sp|Q5M807|RNF5_RAT E3 ubiquitin-protein ligase RNF5 OS=Rattus norvegicus GN=Rnf5 PE=2
SV=1
Length = 180
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 7/103 (6%)
Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
+E++D +G G + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL D +
Sbjct: 3 AAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
ECPVCK ++ + + P+YGRG+ +D LK P RPQG+R
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102
>sp|O35445|RNF5_MOUSE E3 ubiquitin-protein ligase RNF5 OS=Mus musculus GN=Rnf5 PE=1 SV=1
Length = 180
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/103 (43%), Positives = 67/103 (65%), Gaps = 7/103 (6%)
Query: 118 VSEKKDDDEKGS----GNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAK 173
+E++D +G G + F+CNICL+ +R+ VV+ CGHL+CWPCL++WL D +
Sbjct: 3 AAEEEDGGPEGPNRERGGASATFECNICLETAREAVVSVCGHLYCWPCLHQWLETRPDRQ 62
Query: 174 ECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRR 216
ECPVCK ++ + + P+YGRG+ +D LK P RPQG+R
Sbjct: 63 ECPVCKAGISREKVVPLYGRGSQK---PQDPRLKTPPRPQGQR 102
>sp|Q91YT2|RN185_MOUSE E3 ubiquitin-protein ligase RNF185 OS=Mus musculus GN=Rnf185 PE=2
SV=1
Length = 192
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
SG S F+CNICLD ++D V++ CGHLFCWPCL++WL + + CPVCK ++ +
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
P+YGRG++ ++D K P RPQG+R E
Sbjct: 90 PLYGRGSTG---QQDPREKTPPRPQGQRPE 116
>sp|Q568Y3|RN185_RAT E3 ubiquitin-protein ligase RNF185 OS=Rattus norvegicus GN=Rnf185
PE=2 SV=1
Length = 192
Score = 102 bits (253), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
SG S F+CNICLD ++D V++ CGHLFCWPCL++WL + + CPVCK ++ +
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
P+YGRG++ ++D K P RPQG+R E
Sbjct: 90 PLYGRGSTG---QQDPREKTPPRPQGQRPE 116
>sp|Q96GF1|RN185_HUMAN E3 ubiquitin-protein ligase RNF185 OS=Homo sapiens GN=RNF185 PE=1
SV=1
Length = 192
Score = 101 bits (252), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
SG S F+CNICLD ++D V++ CGHLFCWPCL++WL + + CPVCK ++ +
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
P+YGRG++ ++D K P RPQG+R E
Sbjct: 90 PLYGRGSTG---QQDPREKTPPRPQGQRPE 116
>sp|Q6R567|RMA1_CAPAN E3 ubiquitin-protein ligase RMA1H1 OS=Capsicum annuum GN=RMA1H1
PE=1 SV=1
Length = 252
Score = 101 bits (252), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 12/89 (13%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE--------CPVCKGEVTVKNI 187
FDCNICLD +PV+T CGHL+CWPC+Y+W++ S + E CPVCK EV+ K +
Sbjct: 39 FDCNICLDCVHEPVITLCGHLYCWPCIYKWIYFQSVSSENSDQQQPQCPVCKAEVSEKTL 98
Query: 188 TPIYGRGNSTREPEEDSS----LKIPLRP 212
P+YGRG + +P E + + IP RP
Sbjct: 99 IPLYGRGGQSTKPSEGKAPNLGIVIPQRP 127
>sp|Q5RFK9|RN185_PONAB E3 ubiquitin-protein ligase RNF185 OS=Pongo abelii GN=RNF185 PE=2
SV=1
Length = 192
Score = 100 bits (250), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 61/90 (67%), Gaps = 3/90 (3%)
Query: 129 SGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188
SG S F+CNICLD ++D V++ CGHLFCWPCL++WL + + CPVCK ++ +
Sbjct: 30 SGGQDSTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVI 89
Query: 189 PIYGRGNSTREPEEDSSLKIPLRPQGRRIE 218
P+YGRG++ ++D K P RPQG+R E
Sbjct: 90 PLYGRGSTG---QQDPREKTPPRPQGQRPE 116
>sp|O64425|RMA1_ARATH E3 ubiquitin-protein ligase RMA1 OS=Arabidopsis thaliana GN=RMA1
PE=1 SV=1
Length = 249
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/151 (40%), Positives = 80/151 (52%), Gaps = 29/151 (19%)
Query: 72 MELDQLLSHSANGSTLQTGEGSVAAEERANEVPKTCENNTGFLEDEVSEKKDDDEKGSGN 131
M LDQ +A L GEG+ + + E P T VS DD
Sbjct: 1 MALDQSFEDAALLGELY-GEGAFCFKSKKPE-PIT-----------VSVPSDD------T 41
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDA--------KECPVCKGEVT 183
D S FDCNICLD ++PVVT CGHLFCWPC+++WL V S + ++CPVCK +V+
Sbjct: 42 DDSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVS 101
Query: 184 VKNITPIYGRGNSTREPEEDSSLKIPLRPQG 214
+ P+YGRG T + E +S +P RP G
Sbjct: 102 HSTLVPLYGRGRCTTQEEGKNS--VPKRPVG 130
>sp|Q09463|RNF5_CAEEL RING finger protein 5 OS=Caenorhabditis elegans GN=rnf-5 PE=1 SV=1
Length = 235
Score = 99.8 bits (247), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 58/89 (65%), Gaps = 4/89 (4%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195
F+CNICLD ++D VV+ CGHLFCWPCL +WL + + CPVCK + + PIYGRG
Sbjct: 24 FECNICLDAAKDAVVSLCGHLFCWPCLSQWLDTRPNNQVCPVCKSAIDGNKVVPIYGRGG 83
Query: 196 STREPEEDSSLKIPLRPQGRRIESLRQTI 224
+ +P + K+P RP+G+R E Q+
Sbjct: 84 DSSDPRK----KVPPRPKGQRSEPPPQSF 108
>sp|P93030|RMA2_ARATH E3 ubiquitin-protein ligase RMA2 OS=Arabidopsis thaliana GN=RMA2
PE=1 SV=1
Length = 193
Score = 99.8 bits (247), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 46/192 (23%)
Query: 121 KKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKE------ 174
+KD+D+ + G FDCNICLD RDPVVT CGHLFCWPC+++W + +++++
Sbjct: 4 EKDEDDTTLVDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYD 63
Query: 175 -------CPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRIESLRQTIQRT 227
CPVCK +V+ + PIYGRG + P+ S+ +P RP G
Sbjct: 64 HKREPPKCPVCKSDVSEATLVPIYGRGQ--KAPQSGSN--VPSRPTG------------- 106
Query: 228 AYSFPVEEMIRRLGSRFDLARDLTPLRDGSSARETGERANSLINRI--LTSRGIRGEQNT 285
PV + +R +G R L +G S R + ++ + + R + GE ++
Sbjct: 107 ----PVYD-LRGVGQR---------LGEGESQRYMYRMPDPVMGVVCEMVYRRLFGESSS 152
Query: 286 VSAPPDDVDVQS 297
AP D++V+S
Sbjct: 153 NMAPYRDMNVRS 164
>sp|Q6PC78|RN185_DANRE E3 ubiquitin-protein ligase RNF185 OS=Danio rerio GN=rnf185 PE=2
SV=1
Length = 194
Score = 98.6 bits (244), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 42/85 (49%), Positives = 59/85 (69%), Gaps = 3/85 (3%)
Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193
S F+CNICLD S+D V++ CGHLFCWPCL++WL + + CPVCK ++ + P+YGR
Sbjct: 37 STFECNICLDTSKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPLYGR 96
Query: 194 GNSTREPEEDSSLKIPLRPQGRRIE 218
G++ ++D K P RPQG+R E
Sbjct: 97 GSTG---QQDPREKTPPRPQGQRPE 118
>sp|Q5ZIR9|RN185_CHICK E3 ubiquitin-protein ligase RNF185 OS=Gallus gallus GN=RNF185 PE=2
SV=1
Length = 194
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 41/88 (46%), Positives = 60/88 (68%), Gaps = 3/88 (3%)
Query: 131 NDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
N + F+CNICLD ++D V++ CGHLFCWPCL++WL + + CPVCK ++ + P+
Sbjct: 34 NQDNTFECNICLDTAKDAVISLCGHLFCWPCLHQWLETRPNRQVCPVCKAGISRDKVIPL 93
Query: 191 YGRGNSTREPEEDSSLKIPLRPQGRRIE 218
YGRG++ ++D K P RPQG+R E
Sbjct: 94 YGRGSTG---QQDPREKTPPRPQGQRPE 118
>sp|P48754|BRCA1_MOUSE Breast cancer type 1 susceptibility protein homolog OS=Mus musculus
GN=Brca1 PE=1 SV=3
Length = 1812
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK E+T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q54S31|PEX10_DICDI Peroxisome biogenesis factor 10 OS=Dictyostelium discoideum
GN=pex10 PE=3 SV=2
Length = 374
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192
C +CL++ T CGHLFCW C+ W ++ ++CPVC+ ++++ P+Y
Sbjct: 322 CTLCLEVRTHTTATICGHLFCWHCITEWC---NNKEQCPVCRCPISIRTCVPLYN 373
>sp|O54952|BRCA1_RAT Breast cancer type 1 susceptibility protein homolog OS=Rattus
norvegicus GN=Brca1 PE=1 SV=1
Length = 1817
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK E+T +++
Sbjct: 21 ILECPICLELIKEPVSTQCDHIFCKFCMLKLLNQKKGPSQCPLCKNEITKRSL 73
>sp|Q864U1|BRCA1_BOVIN Breast cancer type 1 susceptibility protein homolog OS=Bos taurus
GN=BRCA1 PE=1 SV=1
Length = 1849
Score = 57.0 bits (136), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|P38398|BRCA1_HUMAN Breast cancer type 1 susceptibility protein OS=Homo sapiens
GN=BRCA1 PE=1 SV=2
Length = 1863
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6J0|BRCA1_PONPY Breast cancer type 1 susceptibility protein homolog OS=Pongo
pygmaeus GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q9GKK8|BRCA1_PANTR Breast cancer type 1 susceptibility protein homolog OS=Pan
troglodytes GN=BRCA1 PE=2 SV=2
Length = 1863
Score = 56.6 bits (135), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I8|BRCA1_GORGO Breast cancer type 1 susceptibility protein homolog OS=Gorilla
gorilla gorilla GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q95153|BRCA1_CANFA Breast cancer type 1 susceptibility protein homolog OS=Canis
familiaris GN=BRCA1 PE=3 SV=1
Length = 1878
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQRKGPSQCPLCKNDITKRSL 73
>sp|Q6J6I9|BRCA1_MACMU Breast cancer type 1 susceptibility protein homolog OS=Macaca
mulatta GN=BRCA1 PE=3 SV=1
Length = 1863
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
+C ICL+L ++PV T C H+FC C+ + L+ +CP+CK ++T +++
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCRFCMLKLLNQKKGPSQCPLCKNDITKRSL 73
>sp|Q6PCN7|HLTF_MOUSE Helicase-like transcription factor OS=Mus musculus GN=Hltf PE=1
SV=1
Length = 1003
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
GS +C ICLD PV+T C H+FC PC+ + +H +CP+C+ E+ N+
Sbjct: 749 GSDEECAICLDSLTFPVITHCAHVFCKPCICQVIHSEQPHAKCPLCRNEIHGDNL 803
>sp|Q9SYU4|PEX10_ARATH Peroxisome biogenesis factor 10 OS=Arabidopsis thaliana GN=PEX10
PE=1 SV=1
Length = 381
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 109 NNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV 168
N G L +EK + S + + C +CL + P T CGH+FCW C+ W
Sbjct: 298 NEEGNLITSEAEKGNWSTSDSTSTEAVGKCTLCLSTRQHPTATPCGHVFCWSCIMEWC-- 355
Query: 169 HSDAKECPVCKGEVTVKNITPIY 191
++ +ECP+C+ T ++ +Y
Sbjct: 356 -NEKQECPLCRTPNTHSSLVCLY 377
>sp|O77666|TRI26_PIG Tripartite motif-containing protein 26 OS=Sus scrofa GN=TRIM26 PE=3
SV=2
Length = 545
Score = 53.9 bits (128), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
C+ICLD RDPV CGH+FC C V CP+CK T +NI P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDIHPVSGGRPVCPLCKKPFTKENIRPVW 69
>sp|O60683|PEX10_HUMAN Peroxisome biogenesis factor 10 OS=Homo sapiens GN=PEX10 PE=1 SV=1
Length = 326
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
C +CL+ R P T CGHLFCW C+ W S ECP+C+
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCR 311
>sp|Q8HXW8|PEX10_MACFA Peroxisome biogenesis factor 10 OS=Macaca fascicularis GN=PEX10
PE=2 SV=1
Length = 326
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
C +CL+ R P T CGHLFCW C+ W S ECP+C+
Sbjct: 273 CTLCLEERRHPTATPCGHLFCWECITAWC---SSKAECPLCR 311
>sp|Q06554|IRC20_YEAST Uncharacterized ATP-dependent helicase IRC20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=IRC20 PE=1
SV=1
Length = 1556
Score = 52.0 bits (123), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)
Query: 127 KGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186
K + ND C+ICL + CGH FC C+ WL HS +CP+CKG ++
Sbjct: 1228 KDTLNDNQILSCSICLGEVEIGAIIKCGHYFCKSCILTWLRAHS---KCPICKGFCSISE 1284
Query: 187 ITPIYGRGNSTREPEED 203
+ + NST + E++
Sbjct: 1285 VYN-FKFKNSTEKREKE 1300
>sp|Q6CTZ8|RAD18_KLULA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RAD18
PE=3 SV=1
Length = 427
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 11/81 (13%)
Query: 103 VPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCL 162
VP+T N FL V + D D S C+IC D + V+T CGH FC C+
Sbjct: 5 VPETISNPRDFLHTSVPQLTDLD--------SLLRCHICKDFLKASVLTPCGHSFCSICI 56
Query: 163 YRWLHVHSDAKECPVCKGEVT 183
++L S +CP+C ++T
Sbjct: 57 RKYLQKES---KCPLCLSDLT 74
>sp|Q9ULV8|CBLC_HUMAN Signal transduction protein CBL-C OS=Homo sapiens GN=CBLC PE=1 SV=3
Length = 474
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
D +F C IC + ++D + CGHL C CL W HSD++ CP C+ E+ IY
Sbjct: 345 DSTFELCKICAESNKDVKIEPCGHLLCSCCLAAW--QHSDSQTCPFCRCEIKGWEAVSIY 402
Query: 192 G-RGNSTREPEEDSS 205
G +T E +SS
Sbjct: 403 QFHGQATAEDSGNSS 417
>sp|Q1L5Z9|LONF2_HUMAN LON peptidase N-terminal domain and RING finger protein 2 OS=Homo
sapiens GN=LONRF2 PE=2 SV=3
Length = 754
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 3/60 (5%)
Query: 124 DDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183
++ +G D + F+C +C+ L +PV T CGH FC CL R L A CP+CK +++
Sbjct: 435 EESQGLSLDVTDFECALCMRLLFEPVTTPCGHTFCLKCLERCL---DHAPHCPLCKDKLS 491
>sp|Q7YR34|TRI26_PANTR Tripartite motif-containing protein 26 OS=Pan troglodytes GN=TRIM26
PE=3 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
C+ICLD RDPV CGH+FC C + CP+CK +NI P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q12899|TRI26_HUMAN Tripartite motif-containing protein 26 OS=Homo sapiens GN=TRIM26
PE=2 SV=1
Length = 539
Score = 51.2 bits (121), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 29/54 (53%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
C+ICLD RDPV CGH+FC C + CP+CK +NI P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTTDVRPISGSRPVCPLCKKPFKKENIRPVW 69
>sp|Q32NQ8|RNF10_XENLA RING finger protein 10 OS=Xenopus laevis GN=rnf10 PE=2 SV=1
Length = 756
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHV-HSDAKECPVCKGEVTVKNITPI 190
C ICL +T CGH+FCWPC+ +L + D CP+C + K++ +
Sbjct: 206 CPICLYPPVAAKITRCGHIFCWPCILHYLSLSEKDWSRCPICYSSIIKKDLKSV 259
>sp|P62603|TRI26_RAT Tripartite motif-containing protein 26 OS=Rattus norvegicus
GN=Trim26 PE=2 SV=1
Length = 542
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
C+ICLD RDPV CGH+FC C + + CP+CK +NI P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q14527|HLTF_HUMAN Helicase-like transcription factor OS=Homo sapiens GN=HLTF PE=1
SV=2
Length = 1009
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
GS +C ICLD PV+T C H+FC PC+ + + +CP+C+ ++ N+
Sbjct: 755 GSDEECAICLDSLTVPVITHCAHVFCKPCICQVIQNEQPHAKCPLCRNDIHEDNL 809
>sp|Q99PN3|TRI26_MOUSE Tripartite motif-containing protein 26 OS=Mus musculus GN=Trim26
PE=2 SV=3
Length = 545
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191
C+ICLD RDPV CGH+FC C + + CP+CK +NI P++
Sbjct: 16 CSICLDYLRDPVTIDCGHVFCRSCTSDIRPISGNRPVCPLCKKPFKKENIRPVW 69
>sp|Q95216|HLTF_RABIT Helicase-like transcription factor OS=Oryctolagus cuniculus GN=HLTF
PE=1 SV=1
Length = 1005
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187
GS +C ICLD PV+T C H+FC PC+ + + +CP+C+ ++ N+
Sbjct: 752 GSDEECAICLDSLTVPVITHCAHVFCKPCICQCIQNEQPHAKCPLCRNDIHGDNL 806
>sp|Q9C040|TRIM2_HUMAN Tripartite motif-containing protein 2 OS=Homo sapiens GN=TRIM2 PE=1
SV=1
Length = 744
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|A4IF63|TRIM2_BOVIN Tripartite motif-containing protein 2 OS=Bos taurus GN=TRIM2 PE=2
SV=1
Length = 744
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|F7H9X2|TRIM2_CALJA Tripartite motif-containing protein 2 OS=Callithrix jacchus
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|D3ZQG6|TRIM2_RAT Tripartite motif-containing protein 2 OS=Rattus norvegicus GN=Trim2
PE=1 SV=2
Length = 744
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|Q9ESN6|TRIM2_MOUSE Tripartite motif-containing protein 2 OS=Mus musculus GN=Trim2 PE=1
SV=1
Length = 744
Score = 50.4 bits (119), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|Q00940|PEX10_PICAN Peroxisome biogenesis factor 10 OS=Pichia angusta GN=PEX10 PE=3
SV=1
Length = 295
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%), Gaps = 3/53 (5%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190
C +CL +DP CGH+FCW C+ W+ + +ECP+C+ ++ + P+
Sbjct: 245 CMLCLSPMKDPSCGECGHVFCWKCVLDWV---KERQECPLCRAKMRESQLLPL 294
>sp|D2GXS7|TRIM2_AILME Tripartite motif-containing protein 2 OS=Ailuropoda melanoleuca
GN=TRIM2 PE=3 SV=1
Length = 744
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%)
Query: 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179
D F C+ICL+ ++P V C H FC CL ++ HS CPVC+
Sbjct: 17 DKQFLICSICLERYKNPKVLPCLHTFCERCLQNYIPAHSLTLSCPVCR 64
>sp|Q80X56|TRI69_MOUSE E3 ubiquitin-protein ligase TRIM69 OS=Mus musculus GN=Trim69 PE=1
SV=1
Length = 500
Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 13/95 (13%)
Query: 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG-------------EV 182
C +C D RDP++ CGH FC C+ + VHS CP CK E
Sbjct: 40 LHCPLCNDWFRDPLMLTCGHNFCQDCIQSFWKVHSKETFCPDCKMLCQYSNCTFNLVLEK 99
Query: 183 TVKNITPIYGRGNSTREPEEDSSLKIPLRPQGRRI 217
V+ I + + PE +LK+ +P+G+ I
Sbjct: 100 LVEKIKKLPLLKGHPQCPEHGENLKLFSKPEGKMI 134
>sp|Q75EN0|RAD18_ASHGO Postreplication repair E3 ubiquitin-protein ligase RAD18 OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=RAD18 PE=3 SV=1
Length = 443
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Query: 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182
S C+IC D+ + PV+T CGH FC C+ +L+ S CP+C E+
Sbjct: 28 SLLRCHICKDMLQTPVLTQCGHTFCSLCIREYLNKES---RCPLCLAEL 73
>sp|Q6BLM3|RAD18_DEBHA Postreplication repair E3 ubiquitin-protein ligase RAD18
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=RAD18 PE=3 SV=2
Length = 491
Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181
C IC + + PV+T C H FC C+ +L V+S CP+CK E
Sbjct: 36 CYICKEFLKAPVITSCNHTFCSHCIREYLIVNS---HCPLCKAE 76
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 155,393,478
Number of Sequences: 539616
Number of extensions: 6654429
Number of successful extensions: 16947
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 387
Number of HSP's that attempted gapping in prelim test: 16390
Number of HSP's gapped (non-prelim): 886
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.9 bits)