Query 014562
Match_columns 422
No_of_seqs 390 out of 2060
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 06:21:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014562.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014562hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0823 Predicted E3 ubiquitin 99.7 1.3E-18 2.8E-23 163.8 6.5 93 132-227 44-137 (230)
2 PLN03208 E3 ubiquitin-protein 99.6 6.2E-15 1.3E-19 136.7 7.4 83 132-218 15-110 (193)
3 smart00504 Ubox Modified RING 99.3 2E-12 4.3E-17 99.0 2.4 58 135-195 1-58 (63)
4 PF15227 zf-C3HC4_4: zinc fing 99.2 4E-12 8.6E-17 90.7 2.7 41 138-178 1-42 (42)
5 KOG0320 Predicted E3 ubiquitin 99.2 6.4E-12 1.4E-16 114.3 3.8 57 133-192 129-187 (187)
6 KOG0317 Predicted E3 ubiquitin 99.2 8.3E-12 1.8E-16 121.3 3.7 56 131-189 235-290 (293)
7 PF13923 zf-C3HC4_2: Zinc fing 99.0 1.5E-10 3.2E-15 81.0 2.5 38 138-178 1-39 (39)
8 TIGR00599 rad18 DNA repair pro 99.0 9.4E-11 2E-15 120.4 1.0 63 133-198 24-86 (397)
9 PF13639 zf-RING_2: Ring finge 99.0 1.8E-10 3.8E-15 82.6 1.9 40 137-179 2-44 (44)
10 PF04564 U-box: U-box domain; 99.0 5.7E-11 1.2E-15 94.5 -1.1 64 134-199 3-66 (73)
11 PF13920 zf-C3HC4_3: Zinc fing 98.9 4.7E-10 1E-14 82.6 3.0 46 135-183 2-48 (50)
12 KOG2164 Predicted E3 ubiquitin 98.9 6.3E-10 1.4E-14 115.5 3.5 61 135-195 186-248 (513)
13 PHA02929 N1R/p28-like protein; 98.9 9.6E-10 2.1E-14 106.0 4.3 47 134-183 173-227 (238)
14 PF00097 zf-C3HC4: Zinc finger 98.9 1.6E-09 3.4E-14 76.2 3.2 40 138-178 1-41 (41)
15 KOG0287 Postreplication repair 98.8 2.9E-10 6.2E-15 112.3 -1.9 62 133-197 21-82 (442)
16 PF13445 zf-RING_UBOX: RING-ty 98.7 5.3E-09 1.2E-13 74.9 2.5 38 138-176 1-43 (43)
17 cd00162 RING RING-finger (Real 98.7 1.1E-08 2.3E-13 71.7 3.8 44 137-182 1-45 (45)
18 PHA02926 zinc finger-like prot 98.7 7.4E-09 1.6E-13 97.7 3.6 52 134-185 169-232 (242)
19 COG5432 RAD18 RING-finger-cont 98.7 4E-09 8.7E-14 102.5 1.4 57 134-193 24-80 (391)
20 COG5574 PEX10 RING-finger-cont 98.6 1.2E-08 2.5E-13 98.5 2.4 53 133-187 213-266 (271)
21 KOG0978 E3 ubiquitin ligase in 98.6 7.7E-09 1.7E-13 111.9 1.3 57 134-192 642-698 (698)
22 smart00184 RING Ring finger. E 98.6 3E-08 6.5E-13 67.0 3.3 39 138-178 1-39 (39)
23 PF14634 zf-RING_5: zinc-RING 98.6 2.4E-08 5.1E-13 71.7 2.5 41 137-180 1-44 (44)
24 PF12678 zf-rbx1: RING-H2 zinc 98.6 4.2E-08 9.2E-13 78.1 3.4 40 137-179 21-73 (73)
25 KOG4628 Predicted E3 ubiquitin 98.6 4.3E-08 9.3E-13 98.9 3.8 47 136-184 230-279 (348)
26 PF14835 zf-RING_6: zf-RING of 98.5 4.2E-08 9.1E-13 75.6 1.1 52 135-191 7-59 (65)
27 KOG2177 Predicted E3 ubiquitin 98.5 5E-08 1.1E-12 93.1 1.3 45 133-180 11-55 (386)
28 KOG4159 Predicted E3 ubiquitin 98.4 3.1E-07 6.7E-12 94.7 4.7 125 133-279 82-214 (398)
29 COG5243 HRD1 HRD ubiquitin lig 98.3 2.8E-07 6.1E-12 92.5 3.3 48 134-184 286-346 (491)
30 COG5540 RING-finger-containing 98.3 3.8E-07 8.2E-12 89.5 3.1 46 136-183 324-372 (374)
31 TIGR00570 cdk7 CDK-activating 98.2 9.3E-07 2E-11 88.0 4.0 53 136-190 4-61 (309)
32 PF12861 zf-Apc11: Anaphase-pr 98.2 1.1E-06 2.4E-11 71.7 3.2 49 136-184 22-83 (85)
33 KOG0802 E3 ubiquitin ligase [P 98.1 9.4E-07 2E-11 95.2 2.4 50 135-187 291-345 (543)
34 KOG1002 Nucleotide excision re 98.1 2.7E-06 5.9E-11 88.7 4.6 137 40-186 434-589 (791)
35 KOG0311 Predicted E3 ubiquitin 98.0 6.2E-07 1.3E-11 89.7 -2.3 49 134-184 42-91 (381)
36 KOG0824 Predicted E3 ubiquitin 97.9 3.1E-06 6.8E-11 83.2 1.7 48 136-185 8-55 (324)
37 COG5152 Uncharacterized conser 97.8 8.2E-06 1.8E-10 75.9 1.6 46 134-182 195-240 (259)
38 PF11789 zf-Nse: Zinc-finger o 97.7 1.5E-05 3.3E-10 60.5 1.8 43 134-177 10-53 (57)
39 KOG0297 TNF receptor-associate 97.7 2.2E-05 4.8E-10 81.4 2.6 54 133-189 19-73 (391)
40 KOG1645 RING-finger-containing 97.6 1.4E-05 3E-10 81.5 0.7 61 135-196 4-69 (463)
41 KOG2879 Predicted E3 ubiquitin 97.6 4.7E-05 1E-09 74.1 3.8 51 132-183 236-287 (298)
42 KOG1813 Predicted E3 ubiquitin 97.6 1.7E-05 3.7E-10 77.9 0.6 46 135-183 241-286 (313)
43 KOG1734 Predicted RING-contain 97.6 1.6E-05 3.5E-10 77.1 0.3 57 134-191 223-289 (328)
44 KOG1785 Tyrosine kinase negati 97.6 2.7E-05 5.9E-10 79.1 1.7 53 133-186 367-419 (563)
45 KOG4172 Predicted E3 ubiquitin 97.5 2.6E-05 5.6E-10 58.2 0.6 46 136-183 8-54 (62)
46 KOG0828 Predicted E3 ubiquitin 97.5 4.3E-05 9.2E-10 79.5 2.1 50 132-183 568-634 (636)
47 KOG0804 Cytoplasmic Zn-finger 97.5 3E-05 6.5E-10 79.9 0.5 45 134-183 174-222 (493)
48 KOG4265 Predicted E3 ubiquitin 97.5 7.3E-05 1.6E-09 75.3 3.2 48 133-183 288-336 (349)
49 PF11793 FANCL_C: FANCL C-term 97.5 5.4E-05 1.2E-09 59.9 1.8 50 135-184 2-67 (70)
50 KOG0825 PHD Zn-finger protein 97.4 2.5E-05 5.5E-10 84.7 -1.1 57 134-193 122-181 (1134)
51 KOG2660 Locus-specific chromos 97.4 4.1E-05 8.9E-10 76.4 0.2 48 134-184 14-62 (331)
52 smart00744 RINGv The RING-vari 97.3 0.00019 4.1E-09 52.8 3.1 42 137-179 1-49 (49)
53 KOG3039 Uncharacterized conser 97.2 0.00024 5.1E-09 68.4 3.3 56 134-192 220-279 (303)
54 COG5219 Uncharacterized conser 97.1 0.00013 2.8E-09 80.8 0.8 48 135-183 1469-1523(1525)
55 PF04641 Rtf2: Rtf2 RING-finge 97.1 0.00053 1.1E-08 67.4 4.8 57 132-192 110-170 (260)
56 KOG0827 Predicted E3 ubiquitin 97.1 0.00022 4.7E-09 72.5 2.1 53 136-188 5-61 (465)
57 KOG4692 Predicted E3 ubiquitin 97.1 0.00027 5.8E-09 71.1 2.4 50 132-184 419-468 (489)
58 COG5222 Uncharacterized conser 97.1 0.00023 4.9E-09 70.1 1.7 43 136-180 275-318 (427)
59 KOG1039 Predicted E3 ubiquitin 97.0 0.00031 6.7E-09 71.4 2.3 50 134-183 160-221 (344)
60 COG5194 APC11 Component of SCF 97.0 0.00039 8.5E-09 55.9 2.3 30 152-184 53-82 (88)
61 PF14447 Prok-RING_4: Prokaryo 96.9 0.00045 9.8E-09 51.8 1.6 47 135-186 7-53 (55)
62 KOG0826 Predicted E3 ubiquitin 96.8 0.00057 1.2E-08 68.2 1.6 56 133-191 298-354 (357)
63 KOG4275 Predicted E3 ubiquitin 96.6 0.00089 1.9E-08 65.9 1.8 42 135-183 300-342 (350)
64 KOG4739 Uncharacterized protei 96.6 0.0006 1.3E-08 65.6 0.3 51 135-190 3-55 (233)
65 KOG1493 Anaphase-promoting com 96.6 0.00073 1.6E-08 53.9 0.6 48 137-184 22-82 (84)
66 KOG1571 Predicted E3 ubiquitin 96.3 0.0018 3.9E-08 65.6 1.9 44 134-183 304-347 (355)
67 KOG1001 Helicase-like transcri 96.1 0.0014 3E-08 72.5 -0.3 52 136-189 455-506 (674)
68 KOG4367 Predicted Zn-finger pr 95.9 0.0033 7.2E-08 64.9 1.2 35 133-167 2-36 (699)
69 KOG2930 SCF ubiquitin ligase, 95.7 0.0051 1.1E-07 51.9 1.7 28 152-182 80-107 (114)
70 KOG1814 Predicted E3 ubiquitin 95.6 0.0061 1.3E-07 62.7 2.0 48 134-181 183-238 (445)
71 COG5236 Uncharacterized conser 95.5 0.0096 2.1E-07 60.0 3.1 47 132-181 58-106 (493)
72 KOG4185 Predicted E3 ubiquitin 95.5 0.008 1.7E-07 59.7 2.5 46 135-182 3-54 (296)
73 PF05290 Baculo_IE-1: Baculovi 95.2 0.014 3E-07 51.6 2.7 53 134-186 79-135 (140)
74 KOG3161 Predicted E3 ubiquitin 95.2 0.005 1.1E-07 66.2 -0.1 42 134-181 10-55 (861)
75 KOG1941 Acetylcholine receptor 95.1 0.0073 1.6E-07 61.7 0.6 48 134-182 364-415 (518)
76 KOG2817 Predicted E3 ubiquitin 95.1 0.015 3.2E-07 59.8 2.7 56 133-188 332-390 (394)
77 KOG4445 Uncharacterized conser 95.0 0.0073 1.6E-07 59.8 0.3 53 132-184 112-187 (368)
78 KOG3800 Predicted E3 ubiquitin 94.8 0.019 4.2E-07 56.7 2.6 49 137-187 2-55 (300)
79 PF07800 DUF1644: Protein of u 94.5 0.043 9.3E-07 49.9 3.9 34 135-168 2-48 (162)
80 PHA03096 p28-like protein; Pro 93.7 0.031 6.8E-07 55.7 1.7 46 136-181 179-232 (284)
81 COG5175 MOT2 Transcriptional r 93.7 0.041 8.9E-07 55.5 2.4 51 137-189 16-70 (480)
82 PHA02862 5L protein; Provision 93.5 0.048 1E-06 48.9 2.2 50 137-188 4-58 (156)
83 PHA02825 LAP/PHD finger-like p 93.4 0.075 1.6E-06 48.4 3.3 51 133-185 6-61 (162)
84 KOG3970 Predicted E3 ubiquitin 93.4 0.059 1.3E-06 51.6 2.8 47 136-182 51-104 (299)
85 PF14570 zf-RING_4: RING/Ubox 93.2 0.06 1.3E-06 39.6 2.0 43 138-182 1-47 (48)
86 PF10367 Vps39_2: Vacuolar sor 93.1 0.039 8.4E-07 46.0 1.0 30 134-163 77-108 (109)
87 KOG4362 Transcriptional regula 93.0 0.02 4.2E-07 62.8 -1.1 52 135-186 21-72 (684)
88 KOG3002 Zn finger protein [Gen 93.0 0.055 1.2E-06 54.4 2.1 46 132-183 45-91 (299)
89 KOG3039 Uncharacterized conser 92.9 0.073 1.6E-06 51.6 2.6 37 132-168 40-76 (303)
90 KOG2932 E3 ubiquitin ligase in 92.7 0.039 8.4E-07 55.1 0.4 44 135-183 90-134 (389)
91 KOG0298 DEAD box-containing he 92.6 0.03 6.5E-07 64.7 -0.5 43 134-179 1152-1195(1394)
92 KOG3268 Predicted E3 ubiquitin 92.2 0.09 1.9E-06 48.7 2.2 54 132-185 162-230 (234)
93 KOG2114 Vacuolar assembly/sort 92.2 0.065 1.4E-06 59.7 1.4 41 134-180 839-880 (933)
94 PF05883 Baculo_RING: Baculovi 91.2 0.071 1.5E-06 47.3 0.4 34 135-168 26-68 (134)
95 KOG3113 Uncharacterized conser 90.6 0.24 5.2E-06 48.3 3.4 55 133-192 109-167 (293)
96 PF08746 zf-RING-like: RING-li 90.6 0.26 5.5E-06 35.3 2.7 40 138-178 1-43 (43)
97 PF12906 RINGv: RING-variant d 90.4 0.17 3.7E-06 36.8 1.7 40 138-178 1-47 (47)
98 PF02891 zf-MIZ: MIZ/SP-RING z 90.3 0.23 4.9E-06 36.7 2.3 45 136-181 3-50 (50)
99 KOG1952 Transcription factor N 90.1 0.25 5.5E-06 55.2 3.5 50 133-182 189-246 (950)
100 KOG2034 Vacuolar sorting prote 89.4 0.16 3.6E-06 56.9 1.4 34 135-168 817-852 (911)
101 KOG1428 Inhibitor of type V ad 89.1 0.18 3.9E-06 59.1 1.4 51 134-184 3485-3545(3738)
102 COG5109 Uncharacterized conser 88.9 0.23 5E-06 49.8 1.9 54 133-186 334-390 (396)
103 COG5183 SSM4 Protein involved 88.8 0.32 6.8E-06 54.2 2.9 56 132-188 9-71 (1175)
104 COG5220 TFB3 Cdk activating ki 88.6 0.13 2.9E-06 49.6 0.0 46 136-183 11-64 (314)
105 KOG1100 Predicted E3 ubiquitin 88.2 0.29 6.2E-06 46.8 2.0 39 138-183 161-200 (207)
106 PF03854 zf-P11: P-11 zinc fin 88.0 0.15 3.3E-06 37.3 -0.0 43 137-184 4-47 (50)
107 PF10272 Tmpp129: Putative tra 88.0 0.32 6.9E-06 50.1 2.3 36 153-188 311-356 (358)
108 KOG3579 Predicted E3 ubiquitin 87.4 0.27 5.8E-06 48.7 1.3 36 134-169 267-306 (352)
109 KOG1812 Predicted E3 ubiquitin 87.2 0.36 7.7E-06 50.3 2.1 55 134-188 145-208 (384)
110 KOG1940 Zn-finger protein [Gen 86.8 0.31 6.8E-06 48.4 1.4 42 136-180 159-204 (276)
111 KOG0825 PHD Zn-finger protein 85.9 0.4 8.7E-06 53.3 1.7 48 135-182 96-153 (1134)
112 KOG3899 Uncharacterized conser 85.8 0.37 7.9E-06 47.9 1.3 37 153-189 325-371 (381)
113 COG3813 Uncharacterized protei 76.7 1.4 3.1E-05 35.0 1.4 33 154-191 28-60 (84)
114 KOG1815 Predicted E3 ubiquitin 76.3 1.5 3.3E-05 46.4 2.0 35 134-168 69-104 (444)
115 KOG3053 Uncharacterized conser 73.6 2 4.3E-05 42.2 1.8 51 132-182 17-81 (293)
116 KOG0827 Predicted E3 ubiquitin 71.4 0.4 8.6E-06 49.4 -3.6 48 135-185 196-247 (465)
117 PF06906 DUF1272: Protein of u 67.6 4.2 9E-05 30.9 2.0 44 137-185 7-54 (57)
118 PF07191 zinc-ribbons_6: zinc- 67.3 0.37 8E-06 38.2 -3.8 40 136-183 2-41 (70)
119 PF14569 zf-UDP: Zinc-binding 66.6 6.4 0.00014 31.9 3.0 46 136-183 10-62 (80)
120 PF04216 FdhE: Protein involve 66.6 1.1 2.3E-05 44.8 -1.8 47 132-181 169-220 (290)
121 KOG1812 Predicted E3 ubiquitin 66.1 2.8 6.1E-05 43.7 1.2 41 135-178 306-351 (384)
122 KOG0309 Conserved WD40 repeat- 64.6 3.6 7.7E-05 46.0 1.6 42 136-180 1029-1073(1081)
123 TIGR01562 FdhE formate dehydro 63.3 1.9 4.2E-05 43.5 -0.6 45 134-181 183-233 (305)
124 PF10235 Cript: Microtubule-as 59.9 5.1 0.00011 33.3 1.4 36 136-183 45-80 (90)
125 KOG0289 mRNA splicing factor [ 59.8 15 0.00033 38.8 5.0 57 136-195 1-58 (506)
126 PF05605 zf-Di19: Drought indu 59.2 3.8 8.3E-05 30.3 0.5 39 135-181 2-40 (54)
127 KOG2169 Zn-finger transcriptio 58.3 8.7 0.00019 42.7 3.3 55 134-189 305-362 (636)
128 KOG2068 MOT2 transcription fac 57.4 7.3 0.00016 39.6 2.3 45 136-183 250-298 (327)
129 KOG1609 Protein involved in mR 57.0 6.4 0.00014 38.9 1.9 50 135-185 78-136 (323)
130 KOG0824 Predicted E3 ubiquitin 54.5 4.2 9.1E-05 40.8 0.1 47 134-183 104-151 (324)
131 PRK03564 formate dehydrogenase 54.1 4.9 0.00011 40.7 0.5 44 134-180 186-234 (309)
132 PF04710 Pellino: Pellino; In 53.3 4.4 9.6E-05 42.1 0.0 45 135-182 277-338 (416)
133 KOG4185 Predicted E3 ubiquitin 53.2 2.7 5.9E-05 41.7 -1.5 45 136-182 208-266 (296)
134 PLN02638 cellulose synthase A 53.0 11 0.00024 44.0 3.1 46 136-183 18-70 (1079)
135 PF10497 zf-4CXXC_R1: Zinc-fin 52.2 16 0.00035 31.1 3.2 46 137-182 9-71 (105)
136 COG0068 HypF Hydrogenase matur 51.9 6.6 0.00014 43.8 1.0 50 133-182 99-183 (750)
137 PF10571 UPF0547: Uncharacteri 51.4 7.8 0.00017 24.8 0.9 10 137-146 2-11 (26)
138 PF06844 DUF1244: Protein of u 49.4 10 0.00022 29.8 1.4 13 156-168 11-23 (68)
139 PLN02189 cellulose synthase 48.7 14 0.0003 43.1 2.9 46 136-183 35-87 (1040)
140 KOG0269 WD40 repeat-containing 48.6 15 0.00033 41.2 3.1 45 136-183 780-828 (839)
141 KOG3799 Rab3 effector RIM1 and 48.3 11 0.00024 33.7 1.7 29 132-165 62-91 (169)
142 KOG2113 Predicted RNA binding 46.9 9.4 0.0002 38.7 1.1 43 134-181 342-385 (394)
143 KOG2231 Predicted E3 ubiquitin 46.2 14 0.00029 41.3 2.3 46 137-182 2-51 (669)
144 KOG3842 Adaptor protein Pellin 45.7 18 0.00039 36.7 2.9 52 134-185 340-416 (429)
145 KOG4718 Non-SMC (structural ma 45.4 10 0.00022 36.4 1.1 43 135-180 181-224 (235)
146 PF04710 Pellino: Pellino; In 45.4 7 0.00015 40.7 0.0 50 135-184 328-402 (416)
147 PLN02436 cellulose synthase A 44.5 17 0.00037 42.5 2.9 46 136-183 37-89 (1094)
148 KOG2979 Protein involved in DN 44.5 11 0.00023 37.2 1.1 46 135-181 176-222 (262)
149 PLN02195 cellulose synthase A 44.3 23 0.00051 41.0 3.9 46 136-183 7-59 (977)
150 PF15616 TerY-C: TerY-C metal 42.6 14 0.0003 32.9 1.5 42 135-185 77-118 (131)
151 KOG1356 Putative transcription 42.3 7.7 0.00017 43.9 -0.3 51 135-185 229-284 (889)
152 PF14353 CpXC: CpXC protein 40.0 21 0.00045 31.0 2.1 49 136-184 2-50 (128)
153 PF14446 Prok-RING_1: Prokaryo 39.7 33 0.00071 25.9 2.8 41 135-182 5-51 (54)
154 PRK04023 DNA polymerase II lar 39.6 23 0.0005 41.2 2.9 47 134-185 625-676 (1121)
155 KOG1829 Uncharacterized conser 38.5 11 0.00024 41.2 0.3 41 134-180 510-558 (580)
156 smart00064 FYVE Protein presen 37.9 25 0.00053 26.9 2.0 33 135-167 10-46 (68)
157 smart00647 IBR In Between Ring 37.8 7.4 0.00016 28.9 -0.9 14 152-165 45-58 (64)
158 PF07975 C1_4: TFIIH C1-like d 37.2 22 0.00047 26.6 1.5 26 151-179 25-50 (51)
159 KOG0883 Cyclophilin type, U bo 37.1 38 0.00083 35.4 3.7 63 134-199 39-101 (518)
160 KOG0956 PHD finger protein AF1 35.7 23 0.00049 39.5 2.0 29 149-180 42-70 (900)
161 PLN02400 cellulose synthase 35.5 22 0.00048 41.6 2.0 46 136-183 37-89 (1085)
162 TIGR00622 ssl1 transcription f 35.1 32 0.00069 29.8 2.4 40 137-179 57-110 (112)
163 smart00249 PHD PHD zinc finger 34.8 16 0.00035 24.8 0.5 28 137-164 1-31 (47)
164 PF01363 FYVE: FYVE zinc finge 34.1 12 0.00026 28.7 -0.3 31 135-165 9-43 (69)
165 cd00065 FYVE FYVE domain; Zinc 33.6 26 0.00057 25.6 1.5 31 137-167 4-38 (57)
166 PLN02915 cellulose synthase A 32.6 35 0.00077 39.9 3.0 47 135-183 15-68 (1044)
167 KOG2807 RNA polymerase II tran 31.3 41 0.00089 34.4 2.8 42 136-180 331-375 (378)
168 PF04423 Rad50_zn_hook: Rad50 31.2 27 0.00058 25.8 1.2 11 174-184 22-32 (54)
169 KOG3842 Adaptor protein Pellin 31.2 19 0.00041 36.6 0.5 43 136-181 291-350 (429)
170 COG4647 AcxC Acetone carboxyla 31.0 24 0.00051 31.4 1.0 22 139-160 61-82 (165)
171 PRK11595 DNA utilization prote 29.2 37 0.00081 32.5 2.2 39 137-183 7-45 (227)
172 KOG1815 Predicted E3 ubiquitin 29.1 17 0.00037 38.5 -0.3 34 135-168 226-267 (444)
173 smart00132 LIM Zinc-binding do 29.0 43 0.00093 21.8 1.8 35 137-182 1-37 (39)
174 COG3492 Uncharacterized protei 27.3 29 0.00062 29.0 0.8 12 157-168 43-54 (104)
175 PF13901 DUF4206: Domain of un 26.8 29 0.00063 32.8 0.9 37 136-180 153-197 (202)
176 KOG2066 Vacuolar assembly/sort 26.6 27 0.00059 39.5 0.8 40 137-180 786-832 (846)
177 KOG3726 Uncharacterized conser 25.9 36 0.00078 38.0 1.5 39 137-181 656-698 (717)
178 KOG1814 Predicted E3 ubiquitin 24.4 33 0.00073 36.0 0.9 32 135-166 368-405 (445)
179 PF10146 zf-C4H2: Zinc finger- 24.3 47 0.001 32.3 1.8 24 157-183 196-219 (230)
180 PLN02248 cellulose synthase-li 24.2 49 0.0011 39.0 2.3 32 152-186 149-180 (1135)
181 PF10083 DUF2321: Uncharacteri 24.1 41 0.00089 30.8 1.3 26 155-186 28-53 (158)
182 PF13240 zinc_ribbon_2: zinc-r 23.6 14 0.00031 22.8 -1.2 7 174-180 15-21 (23)
183 COG5151 SSL1 RNA polymerase II 23.0 75 0.0016 32.4 3.0 43 135-180 362-418 (421)
184 PF01485 IBR: IBR domain; Int 22.7 12 0.00027 27.7 -2.0 30 136-165 19-58 (64)
185 PTZ00303 phosphatidylinositol 22.1 44 0.00094 38.0 1.2 31 136-166 461-500 (1374)
186 PF02318 FYVE_2: FYVE-type zin 21.8 46 0.001 28.6 1.1 44 135-180 54-102 (118)
187 PRK14714 DNA polymerase II lar 21.7 48 0.001 39.6 1.5 50 135-184 667-721 (1337)
188 PF12132 DUF3587: Protein of u 21.5 61 0.0013 30.9 2.0 25 144-168 150-178 (199)
189 PRK14559 putative protein seri 21.1 37 0.0008 37.9 0.5 11 172-182 41-51 (645)
190 KOG1729 FYVE finger containing 20.9 19 0.00041 36.2 -1.6 52 132-183 165-225 (288)
191 PF12773 DZR: Double zinc ribb 20.5 80 0.0017 22.5 2.0 28 156-183 13-40 (50)
192 PRK11088 rrmA 23S rRNA methylt 20.3 56 0.0012 31.8 1.5 11 136-146 3-13 (272)
193 KOG2789 Putative Zn-finger pro 20.3 40 0.00087 35.3 0.5 55 136-190 75-152 (482)
194 PF10186 Atg14: UV radiation r 20.2 71 0.0015 31.1 2.2 24 137-168 1-24 (302)
195 PF00412 LIM: LIM domain; Int 20.1 50 0.0011 23.9 0.9 38 138-186 1-40 (58)
196 smart00290 ZnF_UBP Ubiquitin C 20.0 67 0.0014 22.8 1.5 24 138-161 2-25 (50)
No 1
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.3e-18 Score=163.79 Aligned_cols=93 Identities=60% Similarity=1.292 Sum_probs=81.0
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcccccCCC-CCC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLK-IPL 210 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e~~~~~-~p~ 210 (422)
+...|.|.||++..++||++.|||.|||.||++|+..+.+.+.||+|+..++.+.|+|+|+.+..... +...+ +|+
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~~~~~---~~~~~~vP~ 120 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGSKKPS---DPRKKDVPP 120 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCCCCCC---CcccccCCC
Confidence 56789999999999999999999999999999999998888899999999999999999999875433 22333 899
Q ss_pred CCCCCchhhHHHHHhhh
Q 014562 211 RPQGRRIESLRQTIQRT 227 (422)
Q Consensus 211 ~p~~~r~e~lr~~l~r~ 227 (422)
+|+++|.++.+......
T Consensus 121 RP~~~R~e~~~p~~~~~ 137 (230)
T KOG0823|consen 121 RPAGQRYESKRPTPQNR 137 (230)
T ss_pred CCCCccccccCCCCccc
Confidence 99999999887766544
No 2
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.56 E-value=6.2e-15 Score=136.74 Aligned_cols=83 Identities=51% Similarity=1.150 Sum_probs=68.1
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhc-------------CCCCCCCCCCcccccCCceecccCCCCCC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH-------------SDAKECPVCKGEVTVKNITPIYGRGNSTR 198 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~-------------~~~~~CPvCr~~l~~~~l~~~~~~~~~~~ 198 (422)
..+.+.|+||++.+.+|++++|||.||+.||..|+... .....||+|+..++..++.|+|+.+....
T Consensus 15 ~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg~~~~ 94 (193)
T PLN03208 15 SGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRGQKAP 94 (193)
T ss_pred CCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccCCCCC
Confidence 44678999999999999999999999999999998641 12468999999999999999999886432
Q ss_pred CcccccCCCCCCCCCCCchh
Q 014562 199 EPEEDSSLKIPLRPQGRRIE 218 (422)
Q Consensus 199 ~~~e~~~~~~p~~p~~~r~e 218 (422)
.....+|++|.+.+.+
T Consensus 95 ----~~~~~iP~rp~~~~~~ 110 (193)
T PLN03208 95 ----QSGSNVPSRPSGPVYD 110 (193)
T ss_pred ----CCCCCCCcCCCCCccC
Confidence 3356688888886644
No 3
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=99.26 E-value=2e-12 Score=98.96 Aligned_cols=58 Identities=24% Similarity=0.440 Sum_probs=51.9
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCC
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~ 195 (422)
++.|+||.+.+.+|++++|||+||..||..|+.. ...||+|+.+++..+++++..+.+
T Consensus 1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~---~~~cP~~~~~~~~~~l~~~~~l~~ 58 (63)
T smart00504 1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS---HGTDPVTGQPLTHEDLIPNLALKS 58 (63)
T ss_pred CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH---CCCCCCCcCCCChhhceeCHHHHH
Confidence 3689999999999999999999999999999987 568999999999888888765544
No 4
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=99.24 E-value=4e-12 Score=90.67 Aligned_cols=41 Identities=51% Similarity=1.064 Sum_probs=32.4
Q ss_pred cccccCCCCCcEEccCCCccChhhHHHHHHhcCCC-CCCCCC
Q 014562 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDA-KECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~-~~CPvC 178 (422)
|+||+++|.+|++++|||+||..||..|++..... ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999999874333 689988
No 5
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=6.4e-12 Score=114.34 Aligned_cols=57 Identities=39% Similarity=0.872 Sum_probs=50.8
Q ss_pred CCccccccccCCCCC--cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 133 GSFFDCNICLDLSRD--PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~--pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
+..+.||||++.+.+ |+.+.|||+||..||+..++. ...||+|++.++.+.++++|.
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~---~~~CP~C~kkIt~k~~~rI~L 187 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN---TNKCPTCRKKITHKQFHRIYL 187 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHh---CCCCCCcccccchhhheeccC
Confidence 456899999999976 457999999999999999998 779999999999999998874
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=8.3e-12 Score=121.26 Aligned_cols=56 Identities=30% Similarity=0.906 Sum_probs=50.3
Q ss_pred CCCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562 131 NDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 131 ~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~ 189 (422)
..+....|.+|++...+|..+||||.|||.||..|+.. +..||+||.++...+++-
T Consensus 235 i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e---k~eCPlCR~~~~pskvi~ 290 (293)
T KOG0317|consen 235 IPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE---KAECPLCREKFQPSKVIC 290 (293)
T ss_pred CCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc---ccCCCcccccCCCcceee
Confidence 34566899999999999999999999999999999998 678999999999887764
No 7
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=99.01 E-value=1.5e-10 Score=80.95 Aligned_cols=38 Identities=58% Similarity=1.270 Sum_probs=33.5
Q ss_pred cccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 138 CNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
|+||++.+.+| +.++|||+||..|+.+|++. ...||+|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~---~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK---NPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC---TSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHC---cCCCcCC
Confidence 89999999999 58999999999999999987 5799998
No 8
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.99 E-value=9.4e-11 Score=120.37 Aligned_cols=63 Identities=29% Similarity=0.654 Sum_probs=54.2
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTR 198 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~ 198 (422)
+..+.|+||++.|.+|++++|||.||..||..|+.. ...||+|+..+....+..++.+.+++.
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~---~~~CP~Cr~~~~~~~Lr~N~~L~~iVe 86 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN---QPKCPLCRAEDQESKLRSNWLVSEIVE 86 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC---CCCCCCCCCccccccCccchHHHHHHH
Confidence 456899999999999999999999999999999987 458999999988777877776655544
No 9
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.98 E-value=1.8e-10 Score=82.56 Aligned_cols=40 Identities=43% Similarity=1.063 Sum_probs=34.5
Q ss_pred ccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 137 DCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 137 ~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
.|+||++.+.. .+.++|||.||..||..|++. +..||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~---~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR---NNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH---SSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh---CCcCCccC
Confidence 69999999953 467899999999999999998 56999996
No 10
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.97 E-value=5.7e-11 Score=94.52 Aligned_cols=64 Identities=25% Similarity=0.452 Sum_probs=50.4
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTRE 199 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~ 199 (422)
+.|.|+||.+++.+||+++|||+|+..||..|+.. +...||+|+.++...++.++..+...+..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~--~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~ 66 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQ--NGGTDPFTRQPLSESDLIPNRALKSAIEE 66 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCT--TSSB-TTT-SB-SGGGSEE-HHHHHHHHH
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHc--CCCCCCCCCCcCCcccceECHHHHHHHHH
Confidence 46899999999999999999999999999999987 45689999999999999998766544433
No 11
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.94 E-value=4.7e-10 Score=82.57 Aligned_cols=46 Identities=41% Similarity=0.933 Sum_probs=40.6
Q ss_pred ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+..|.||++.+.+.++++|||. ||..|+..|++. ...||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKR---KKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHT---TSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhccc---CCCCCcCChhhc
Confidence 3589999999999999999999 999999999986 779999999875
No 12
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=6.3e-10 Score=115.46 Aligned_cols=61 Identities=33% Similarity=0.898 Sum_probs=54.1
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCceecccCCC
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITPIYGRGN 195 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~~~~~~~ 195 (422)
...||||++...-|+.+.|||.||..||.++|.. ......||+|+..+..++|.++++...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 5799999999999999999999999999998876 233578999999999999999988655
No 13
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.90 E-value=9.6e-10 Score=106.00 Aligned_cols=47 Identities=30% Similarity=0.863 Sum_probs=40.4
Q ss_pred CccccccccCCCCCc--------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDP--------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p--------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
....|+||++.+.++ ++++|||.||..||.+|+.. ..+||+||.++.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~---~~tCPlCR~~~~ 227 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE---KNTCPVCRTPFI 227 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc---CCCCCCCCCEee
Confidence 346999999987653 56799999999999999987 679999999876
No 14
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.86 E-value=1.6e-09 Score=76.21 Aligned_cols=40 Identities=50% Similarity=1.227 Sum_probs=36.8
Q ss_pred cccccCCCCCcE-EccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 138 CNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
|+||++.+.+++ +++|||.||..||..|+.. .....||+|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~-~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLEN-SGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHH-TSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHh-cCCccCCcC
Confidence 899999999999 8999999999999999996 457789998
No 15
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.84 E-value=2.9e-10 Score=112.35 Aligned_cols=62 Identities=26% Similarity=0.612 Sum_probs=54.4
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNST 197 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~ 197 (422)
++-+.|-||.++|..|+++||||+||.-||..+|.. +..||.|..++....+..++.+..++
T Consensus 21 D~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~---~p~CP~C~~~~~Es~Lr~n~il~Eiv 82 (442)
T KOG0287|consen 21 DDLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY---KPQCPTCCVTVTESDLRNNRILDEIV 82 (442)
T ss_pred HHHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc---CCCCCceecccchhhhhhhhHHHHHH
Confidence 356899999999999999999999999999999998 67899999999988888777655443
No 16
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.74 E-value=5.3e-09 Score=74.94 Aligned_cols=38 Identities=37% Similarity=0.902 Sum_probs=23.8
Q ss_pred cccccCCCCC----cEEccCCCccChhhHHHHHHhc-CCCCCCC
Q 014562 138 CNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVH-SDAKECP 176 (422)
Q Consensus 138 C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~-~~~~~CP 176 (422)
|+||.+ |.+ |++++|||+||..||.++++.. ....+||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 888 8999999999999999999873 2466787
No 17
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.73 E-value=1.1e-08 Score=71.66 Aligned_cols=44 Identities=43% Similarity=1.207 Sum_probs=37.0
Q ss_pred ccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 137 DCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
.|+||++.+.+++.+ +|||.||..|+..|+.. ....||+|+..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKS--GKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHh--CcCCCCCCCCcC
Confidence 499999999777655 59999999999999986 356799998753
No 18
>PHA02926 zinc finger-like protein; Provisional
Probab=98.72 E-value=7.4e-09 Score=97.73 Aligned_cols=52 Identities=23% Similarity=0.786 Sum_probs=40.9
Q ss_pred CccccccccCCCCC---------cEEccCCCccChhhHHHHHHhc---CCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRD---------PVVTCCGHLFCWPCLYRWLHVH---SDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~---------pv~l~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l~~~ 185 (422)
.+..|+||++...+ +++.+|+|.||..||..|.... +....||+||..+..-
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I 232 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI 232 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence 45699999998633 4577999999999999999862 2245799999987643
No 19
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.71 E-value=4e-09 Score=102.49 Aligned_cols=57 Identities=33% Similarity=0.666 Sum_probs=49.0
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
..+.|-||-+.|..|+.++|||+||+-||..+|.. ...||+|+.+....-+...++.
T Consensus 24 s~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~---qp~CP~Cr~~~~esrlr~~s~~ 80 (391)
T COG5432 24 SMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT---QPFCPVCREDPCESRLRGSSGS 80 (391)
T ss_pred hHHHhhhhhheeecceecccccchhHHHHHHHhcC---CCCCccccccHHhhhcccchhH
Confidence 45799999999999999999999999999999988 6689999998766655554443
No 20
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=1.2e-08 Score=98.47 Aligned_cols=53 Identities=36% Similarity=0.872 Sum_probs=45.8
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHH-HHHhcCCCCCCCCCCcccccCCc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYR-WLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~-wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
...+.|.||++....|..++|||+||+.||.. |-+. ....||+||+....+.+
T Consensus 213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~--k~~~CplCRak~~pk~v 266 (271)
T COG5574 213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKK--KYEFCPLCRAKVYPKKV 266 (271)
T ss_pred ccccceeeeecccCCcccccccchhhHHHHHHHHHhh--ccccCchhhhhccchhh
Confidence 34679999999999999999999999999999 8776 23459999998887765
No 21
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.7e-09 Score=111.91 Aligned_cols=57 Identities=26% Similarity=0.713 Sum_probs=51.8
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
..+.|++|..-+++.+++.|||+||..|+...+.. ....||.|.+.|...|++++|.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~et--RqRKCP~Cn~aFganDv~~I~l 698 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYET--RQRKCPKCNAAFGANDVHRIHL 698 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHH--hcCCCCCCCCCCCcccccccCC
Confidence 35799999999999999999999999999998876 4678999999999999998873
No 22
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.62 E-value=3e-08 Score=66.98 Aligned_cols=39 Identities=49% Similarity=1.302 Sum_probs=35.0
Q ss_pred cccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 138 CNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
|+||++....++.++|||.||..|+..|+.. ....||+|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~--~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKS--GNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHh--CcCCCCCC
Confidence 8999999999999999999999999999983 35679987
No 23
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.60 E-value=2.4e-08 Score=71.71 Aligned_cols=41 Identities=41% Similarity=1.097 Sum_probs=34.6
Q ss_pred ccccccCCC---CCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 137 DCNICLDLS---RDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 137 ~C~ICl~~~---~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
.|+||++.+ ..+++++|||+||..|+..+.. ....||+|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~---~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKG---KSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcC---CCCCCcCCCC
Confidence 499999999 2467899999999999999883 3668999975
No 24
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=98.57 E-value=4.2e-08 Score=78.12 Aligned_cols=40 Identities=40% Similarity=1.133 Sum_probs=33.3
Q ss_pred ccccccCCCCCc-------------EEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 137 DCNICLDLSRDP-------------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 137 ~C~ICl~~~~~p-------------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
.|+||++.+.++ +..+|||.||..||.+|++. ...||+||
T Consensus 21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR 73 (73)
T PF12678_consen 21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ---NNTCPLCR 73 (73)
T ss_dssp BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT---SSB-TTSS
T ss_pred cccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc---CCcCCCCC
Confidence 599999999432 34589999999999999998 66999997
No 25
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=4.3e-08 Score=98.86 Aligned_cols=47 Identities=32% Similarity=0.717 Sum_probs=40.0
Q ss_pred cccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
..|.||++.|... .++||+|.||..||..|+..+ ...||+|+..+..
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~--r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQT--RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhc--CccCCCCCCcCCC
Confidence 5999999999886 478999999999999999982 3459999986543
No 26
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.48 E-value=4.2e-08 Score=75.59 Aligned_cols=52 Identities=33% Similarity=0.870 Sum_probs=27.9
Q ss_pred ccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
.+.|++|.+.+.+|+. ..|.|.||+.||..-+.. .||+|..+....++.-|.
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~-----~CPvC~~Paw~qD~~~Nr 59 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS-----ECPVCHTPAWIQDIQINR 59 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT-----B-SSS--B-S-SS----H
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC-----CCCCcCChHHHHHHHhhh
Confidence 4799999999999984 699999999999875554 699999998888876554
No 27
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.45 E-value=5e-08 Score=93.15 Aligned_cols=45 Identities=42% Similarity=0.960 Sum_probs=40.5
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
.+++.|+||++.|.+|++++|||+||..|+..++. ....||.|+.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~---~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE---GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcC---CCcCCcccCC
Confidence 46789999999999999999999999999999887 3578999994
No 28
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.1e-07 Score=94.74 Aligned_cols=125 Identities=27% Similarity=0.351 Sum_probs=78.8
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcccccCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEEDSSLKIPLRP 212 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e~~~~~~p~~p 212 (422)
..+|.|.||...+..|+.++|||+||..||.+-+.. ...||.|+..+..-.....+. .
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~---~~~cp~Cr~~l~e~~~~~~~~---------------~---- 139 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ---ETECPLCRDELVELPALEQAL---------------S---- 139 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhcc---CCCCcccccccccchHHHHHH---------------H----
Confidence 467999999999999999999999999999997765 678999998876411000000 0
Q ss_pred CCCchhhHHHHHhhhccccc-------HHHHHHHhchhchh-cccccccCCCCchhhhhHhHHHHHHHHHHhhcc
Q 014562 213 QGRRIESLRQTIQRTAYSFP-------VEEMIRRLGSRFDL-ARDLTPLRDGSSARETGERANSLINRILTSRGI 279 (422)
Q Consensus 213 ~~~r~e~lr~~l~r~~~~~~-------iee~~~~l~~kld~-v~kl~~~~~~~~~~~~~~r~~~il~rfl~~r~~ 279 (422)
-+.....+...+..+.+.+. .++-.......-.| +....++..+.-++.++.+|..|..++++.+..
T Consensus 140 ~~r~~~~li~~F~~~~~~~s~~~~~~~~~e~~~~e~~~p~f~v~~~~~p~v~cpl~vfe~~y~lm~~r~~~~~~~ 214 (398)
T KOG4159|consen 140 LNRLLCKLITKFLEGSSSFSPKASEKSKEEESSRECESPLFPVCTLAFPEVPCPLQVFEPRYRLMIRRLLETGDK 214 (398)
T ss_pred HHHHHHHHHHHhhhhhhccchhhhhhhccccccccccCCcccccccccccccCcHHHccchHHHHHHHHHhhcce
Confidence 01111111222222211110 01101111111114 678888999999999999999999999987443
No 29
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=2.8e-07 Score=92.47 Aligned_cols=48 Identities=35% Similarity=0.832 Sum_probs=40.6
Q ss_pred CccccccccCCC-CC------------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLS-RD------------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~-~~------------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+...|.||++.+ .. |..+||||.||..|++.|++. ..+||+||.++..
T Consensus 286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER---qQTCPICr~p~if 346 (491)
T COG5243 286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER---QQTCPICRRPVIF 346 (491)
T ss_pred CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh---ccCCCcccCcccc
Confidence 345999999984 33 367899999999999999998 7899999998653
No 30
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.29 E-value=3.8e-07 Score=89.50 Aligned_cols=46 Identities=30% Similarity=0.749 Sum_probs=39.5
Q ss_pred cccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
..|.||++.|... +.+||.|.||..|+.+|+.. .+..||+||.++.
T Consensus 324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~--y~~~CPvCrt~iP 372 (374)
T COG5540 324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLG--YSNKCPVCRTAIP 372 (374)
T ss_pred ceEEEEhhhhcccceEEEeccCceechhHHHHHHhh--hcccCCccCCCCC
Confidence 6999999999653 57899999999999999984 2558999999875
No 31
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.22 E-value=9.3e-07 Score=88.02 Aligned_cols=53 Identities=26% Similarity=0.609 Sum_probs=40.8
Q ss_pred cccccccCC-CCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562 136 FDCNICLDL-SRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190 (422)
Q Consensus 136 ~~C~ICl~~-~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~ 190 (422)
..||||... +..|. +.+|||.||..|+..++.. +...||.|+..+...++.+.
T Consensus 4 ~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~--~~~~CP~C~~~lrk~~fr~q 61 (309)
T TIGR00570 4 QGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GSGSCPECDTPLRKNNFRVQ 61 (309)
T ss_pred CCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcC--CCCCCCCCCCccchhhcccc
Confidence 589999985 44442 2379999999999997754 35689999999888776543
No 32
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.19 E-value=1.1e-06 Score=71.65 Aligned_cols=49 Identities=29% Similarity=0.687 Sum_probs=38.5
Q ss_pred cccccccCCCCC------------cE-EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRD------------PV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~------------pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
..|.||...|.. |+ .-.|+|.||..||.+|+..+.....||+||.++..
T Consensus 22 d~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 22 DVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 377777777742 22 33799999999999999986557899999998754
No 33
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.4e-07 Score=95.18 Aligned_cols=50 Identities=30% Similarity=0.648 Sum_probs=43.6
Q ss_pred ccccccccCCCCC-----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 135 FFDCNICLDLSRD-----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 135 ~~~C~ICl~~~~~-----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
...|+||++.+.. +..++|||.||..|+..|++. ..+||+||..+....+
T Consensus 291 ~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er---~qtCP~CR~~~~~~~~ 345 (543)
T KOG0802|consen 291 DELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER---QQTCPTCRTVLYDYVL 345 (543)
T ss_pred CCeeeeechhhccccccccceeecccchHHHHHHHHHHH---hCcCCcchhhhhcccc
Confidence 4599999999988 789999999999999999999 7799999996544443
No 34
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=98.10 E-value=2.7e-06 Score=88.67 Aligned_cols=137 Identities=18% Similarity=0.365 Sum_probs=88.5
Q ss_pred hHHHHHHHHHHHHHhhhhhhcCCCCCCCCCcchhhhh-----------------hhhccCCCCCccCCCcchHHHhhhhc
Q 014562 40 PIDRLREAVRLRSRQRYRWRQVPIPPESRNLPMELDQ-----------------LLSHSANGSTLQTGEGSVAAEERANE 102 (422)
Q Consensus 40 ~lrri~eav~~RrRqR~R~Rql~~~~~~~~~~~El~~-----------------l~~n~~~~~~l~~ge~~~~~~er~~e 102 (422)
-++-++.-+++|+..--|...+++|+...++..++-+ |-+....+..+++...+.....|+.+
T Consensus 434 ~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlNNYAnIF~LitRmRQ 513 (791)
T KOG1002|consen 434 NIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLNNYANIFTLITRMRQ 513 (791)
T ss_pred HHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhhhHHHHHHHHHHHHH
Confidence 3444555668888888899999999998877655411 11122334445555555555556555
Q ss_pred cccccccCCccchhhhcccccccccCCCCCCCccccccccCCCCCcEEccCCCccChhhHHHHHHh--cCCCCCCCCCCc
Q 014562 103 VPKTCENNTGFLEDEVSEKKDDDEKGSGNDGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV--HSDAKECPVCKG 180 (422)
Q Consensus 103 ~~k~~~~~~~~~~~~~~~~ke~v~~~~~~~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~ 180 (422)
+... .+.+...+ .....+....+..|.+|-+...+++.+.|.|.||.-||..+... .+...+||+|..
T Consensus 514 ~aDH--------P~LVl~S~--~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i 583 (791)
T KOG1002|consen 514 AADH--------PDLVLYSA--NANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHI 583 (791)
T ss_pred hccC--------cceeeehh--hcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccc
Confidence 4211 11111110 01111223356799999999999999999999999999998776 233579999998
Q ss_pred ccccCC
Q 014562 181 EVTVKN 186 (422)
Q Consensus 181 ~l~~~~ 186 (422)
.++...
T Consensus 584 ~LsiDl 589 (791)
T KOG1002|consen 584 GLSIDL 589 (791)
T ss_pred cccccc
Confidence 887653
No 35
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=6.2e-07 Score=89.69 Aligned_cols=49 Identities=33% Similarity=0.820 Sum_probs=42.0
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
..+.|+||+++++...++ .|+|.||..||...++. +...||.||+.+..
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~--gn~ecptcRk~l~S 91 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRS--GNNECPTCRKKLVS 91 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh--cCCCCchHHhhccc
Confidence 457999999999988755 89999999999888876 56789999998753
No 36
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=3.1e-06 Score=83.19 Aligned_cols=48 Identities=31% Similarity=0.685 Sum_probs=42.1
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|+||+....-|+.++|+|.||+-||+-.... ++..|++||.++...
T Consensus 8 ~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~n--dk~~CavCR~pids~ 55 (324)
T KOG0824|consen 8 KECLICYNTGNCPVNLYCFHKFCYICIKGSYKN--DKKTCAVCRFPIDST 55 (324)
T ss_pred CcceeeeccCCcCccccccchhhhhhhcchhhc--CCCCCceecCCCCcc
Confidence 489999999999999999999999999976655 466799999998754
No 37
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.79 E-value=8.2e-06 Score=75.90 Aligned_cols=46 Identities=41% Similarity=0.757 Sum_probs=40.9
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
-.|.|.||...|..||++.|||.||..|...-++. ...|-+|.+..
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k---g~~C~~Cgk~t 240 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQK---GDECGVCGKAT 240 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhcc---CCcceecchhh
Confidence 45899999999999999999999999999887776 66899998754
No 38
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=97.72 E-value=1.5e-05 Score=60.54 Aligned_cols=43 Identities=33% Similarity=0.662 Sum_probs=31.0
Q ss_pred CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCC
Q 014562 134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPV 177 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPv 177 (422)
..+.|||.+..|.+|+. ..|||+|....|..|+.. .....||+
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~-~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQR-NGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTT-TS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHh-cCCCCCCC
Confidence 45799999999999986 599999999999999954 44778999
No 39
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=97.66 E-value=2.2e-05 Score=81.38 Aligned_cols=54 Identities=43% Similarity=0.880 Sum_probs=47.6
Q ss_pred CCccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562 133 GSFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~ 189 (422)
...+.|++|...+.+|+. +.|||.||..|+..|+.. +..||.|+..+......+
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~---~~~cp~~~~~~~~~~~~~ 73 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN---HQKCPVCRQELTQAEELP 73 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhcc---CcCCcccccccchhhccC
Confidence 456899999999999998 599999999999999998 779999999887666554
No 40
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.65 E-value=1.4e-05 Score=81.48 Aligned_cols=61 Identities=36% Similarity=0.752 Sum_probs=52.1
Q ss_pred ccccccccCCCCCc-----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCC
Q 014562 135 FFDCNICLDLSRDP-----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNS 196 (422)
Q Consensus 135 ~~~C~ICl~~~~~p-----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~ 196 (422)
..+||||++.+.-+ +.+.|||.|-..||..|+.+ .....||.|..+-....+++.|.+..+
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k-~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGK-KTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhh-hhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 35999999999876 46899999999999999963 557789999999999999998876544
No 41
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.61 E-value=4.7e-05 Score=74.14 Aligned_cols=51 Identities=27% Similarity=0.650 Sum_probs=41.5
Q ss_pred CCCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 132 DGSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.....+|++|.+....|.+. +|||.||+.||..-... ..+..||.|..+..
T Consensus 236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~-~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLW-DASFTCPLCGENVE 287 (298)
T ss_pred ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcc-hhhcccCccCCCCc
Confidence 44667999999999999765 69999999999986654 23679999987654
No 42
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.7e-05 Score=77.90 Aligned_cols=46 Identities=37% Similarity=0.767 Sum_probs=40.2
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.+.|-||...|..||++.|||.||..|...-+.. ...|++|.+.+.
T Consensus 241 Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk---~~~c~vC~~~t~ 286 (313)
T KOG1813|consen 241 PFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK---GEKCYVCSQQTH 286 (313)
T ss_pred CccccccccccccchhhcCCceeehhhhcccccc---CCcceecccccc
Confidence 3679999999999999999999999998877765 568999987654
No 43
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=1.6e-05 Score=77.06 Aligned_cols=57 Identities=26% Similarity=0.500 Sum_probs=45.6
Q ss_pred CccccccccCCCCCc----------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 134 SFFDCNICLDLSRDP----------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
+.-.|.||-..+... ..++|+|+|+..||.-|.-. +.+.+||.|++.+..+.+..|.
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWciv-GKkqtCPYCKekVdl~rmfsnp 289 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIV-GKKQTCPYCKEKVDLKRMFSNP 289 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheee-cCCCCCchHHHHhhHhhhccCc
Confidence 445999999887543 36899999999999999876 5578999999988777665533
No 44
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=97.58 E-value=2.7e-05 Score=79.08 Aligned_cols=53 Identities=32% Similarity=0.853 Sum_probs=45.3
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
..+-.|-||-+.-++-.+-||||..|..|+..|.... ....||.||..+....
T Consensus 367 sTFeLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd-~gq~CPFCRcEIKGte 419 (563)
T KOG1785|consen 367 STFELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSD-EGQTCPFCRCEIKGTE 419 (563)
T ss_pred chHHHHHHhhccCCCcccccccchHHHHHHHhhcccC-CCCCCCceeeEecccc
Confidence 3456899999999998899999999999999999763 3678999999987544
No 45
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=2.6e-05 Score=58.21 Aligned_cols=46 Identities=30% Similarity=0.852 Sum_probs=39.6
Q ss_pred cccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
..|.||++...+.|+--|||- .|+.|-.+.++. .+..||+||+++.
T Consensus 8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~--~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKA--LHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCcchHHHHHcchHHhHHHHHHHHHHc--cCCcCcchhhHHH
Confidence 589999999999999999997 699998887764 3668999999874
No 46
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.51 E-value=4.3e-05 Score=79.47 Aligned_cols=50 Identities=30% Similarity=0.664 Sum_probs=39.5
Q ss_pred CCCccccccccCCCCC-----------------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 132 DGSFFDCNICLDLSRD-----------------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~-----------------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
......|+||+..+.- -..+||.|.|+..|+.+|... .+-.||+||.++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~--ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDT--YKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhh--hcccCCccCCCCC
Confidence 3456799999987631 135799999999999999985 2458999999875
No 47
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=97.47 E-value=3e-05 Score=79.89 Aligned_cols=45 Identities=29% Similarity=0.792 Sum_probs=38.7
Q ss_pred CccccccccCCCCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+-.+||||++.+...+ .+.|.|+|+..|+..|... +||+||.-..
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~-----scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS-----SCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecccccchHHHhhcccC-----cChhhhhhcC
Confidence 4569999999997654 5699999999999999987 8999998654
No 48
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.47 E-value=7.3e-05 Score=75.35 Aligned_cols=48 Identities=38% Similarity=0.742 Sum_probs=40.9
Q ss_pred CCccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+.-..|.||+....+-+++||.|. .|..|.+..--. +..||+||.++.
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q---~n~CPICRqpi~ 336 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ---TNNCPICRQPIE 336 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHh---hcCCCccccchH
Confidence 345799999999999999999998 699999876644 558999999874
No 49
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.47 E-value=5.4e-05 Score=59.86 Aligned_cols=50 Identities=32% Similarity=0.776 Sum_probs=25.7
Q ss_pred ccccccccCCCC-C---cEE----ccCCCccChhhHHHHHHhcCC--------CCCCCCCCccccc
Q 014562 135 FFDCNICLDLSR-D---PVV----TCCGHLFCWPCLYRWLHVHSD--------AKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~-~---pv~----l~CGH~FC~~CI~~wl~~~~~--------~~~CPvCr~~l~~ 184 (422)
+..|.||+..+. . |.. ..|++.||..||..|+..... ...||.|+.+++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 468999999865 2 221 379999999999999986211 1369999998764
No 50
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=97.40 E-value=2.5e-05 Score=84.74 Aligned_cols=57 Identities=28% Similarity=0.549 Sum_probs=46.0
Q ss_pred CccccccccCCCCCcE---EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 134 SFFDCNICLDLSRDPV---VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv---~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
..-.|++|+..+.+.. -.+|+|.||..||..|.+. ..+||+|+..|....+...+..
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~---aqTCPiDR~EF~~v~V~eS~~~ 181 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC---AQTCPVDRGEFGEVKVLESTGI 181 (1134)
T ss_pred hhhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhh---cccCchhhhhhheeeeeccccc
Confidence 4568999999887753 4689999999999999998 7899999999876555544444
No 51
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=97.39 E-value=4.1e-05 Score=76.35 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=42.1
Q ss_pred CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
....|.+|..+|.++.+ +-|-|+||..||..++.. ...||.|...+..
T Consensus 14 ~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~---~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 14 PHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE---SKYCPTCDIVIHK 62 (331)
T ss_pred cceehhhccceeecchhHHHHHHHHHHHHHHHHHHH---hccCCccceeccC
Confidence 45699999999999974 689999999999999998 7899999876643
No 52
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.33 E-value=0.00019 Score=52.83 Aligned_cols=42 Identities=40% Similarity=0.887 Sum_probs=33.4
Q ss_pred ccccccC--CCCCcEEccCC-----CccChhhHHHHHHhcCCCCCCCCCC
Q 014562 137 DCNICLD--LSRDPVVTCCG-----HLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 137 ~C~ICl~--~~~~pv~l~CG-----H~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
.|-||++ ...++.+.||. |.+|..|+.+|+.. +....||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~-~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINE-SGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHH-cCCCcCCCCC
Confidence 4899997 33456778985 88999999999987 3356899995
No 53
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.22 E-value=0.00024 Score=68.35 Aligned_cols=56 Identities=16% Similarity=0.283 Sum_probs=49.3
Q ss_pred CccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
..+.||||.+.+.+. ++-+|||+||..|+.+.+.. -..||+|..++...+|+.+..
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~---D~v~pv~d~plkdrdiI~Lqr 279 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK---DMVDPVTDKPLKDRDIIGLQR 279 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc---cccccCCCCcCcccceEeeec
Confidence 568999999999885 46699999999999999887 668999999999999988654
No 54
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.14 E-value=0.00013 Score=80.75 Aligned_cols=48 Identities=35% Similarity=0.929 Sum_probs=39.0
Q ss_pred ccccccccCCCC--C---c--EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSR--D---P--VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~--~---p--v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
...|+||+..+. + | ....|.|.||..|+.+|++. ++...||+||..++
T Consensus 1469 ~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~S-s~~s~CPlCRseit 1523 (1525)
T COG5219 1469 HEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFAS-SARSNCPLCRSEIT 1523 (1525)
T ss_pred cchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHh-cCCCCCCccccccc
Confidence 458999998875 1 2 23469999999999999998 66789999997765
No 55
>PF04641 Rtf2: Rtf2 RING-finger
Probab=97.13 E-value=0.00053 Score=67.37 Aligned_cols=57 Identities=25% Similarity=0.421 Sum_probs=46.2
Q ss_pred CCCccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 132 DGSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
....+.|||+...|..- ++.+|||+|+..||...- . ...||+|..++...+++++..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~---~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-K---SKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-c---cccccccCCccccCCEEEecC
Confidence 45678999999999543 356999999999999874 2 447999999999999887543
No 56
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.00022 Score=72.49 Aligned_cols=53 Identities=26% Similarity=0.827 Sum_probs=38.5
Q ss_pred cccccccCCCCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562 136 FDCNICLDLSRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188 (422)
Q Consensus 136 ~~C~ICl~~~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~ 188 (422)
..|.||.+.+-.-. +-.|||+|+..|+.+|+........||+|+-.+....++
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~~~ 61 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERHVA 61 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccceeee
Confidence 48999966554321 335999999999999999855457999999554444333
No 57
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.10 E-value=0.00027 Score=71.05 Aligned_cols=50 Identities=30% Similarity=0.550 Sum_probs=43.7
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+.++..||||+--...++..||+|.-|+.||.+.+.+ .+.|=.|+..+..
T Consensus 419 ~sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN---~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 419 DSEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN---CKRCFFCKTTVID 468 (489)
T ss_pred CcccccCcceecccchhhccCCCCchHHHHHHHHHhc---CCeeeEecceeee
Confidence 3456799999999999999999999999999999988 7789999887653
No 58
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.08 E-value=0.00023 Score=70.13 Aligned_cols=43 Identities=40% Similarity=0.926 Sum_probs=37.6
Q ss_pred cccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
+.|+.|..++.+|+.+ .|||.||..||...|-. ..+.||.|..
T Consensus 275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~d--sDf~CpnC~r 318 (427)
T COG5222 275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLD--SDFKCPNCSR 318 (427)
T ss_pred ccCcchhhhhhCcccCccccchHHHHHHhhhhhh--ccccCCCccc
Confidence 8999999999999977 89999999999986654 2678999965
No 59
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00031 Score=71.45 Aligned_cols=50 Identities=28% Similarity=0.808 Sum_probs=39.8
Q ss_pred CccccccccCCCCCcE--------EccCCCccChhhHHHHHHhcCC----CCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPV--------VTCCGHLFCWPCLYRWLHVHSD----AKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv--------~l~CGH~FC~~CI~~wl~~~~~----~~~CPvCr~~l~ 183 (422)
.+..|.||++...+.. +.+|-|.||..||..|-..... .+.||.||....
T Consensus 160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4569999999987765 3679999999999999855111 478999998654
No 60
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=97.02 E-value=0.00039 Score=55.86 Aligned_cols=30 Identities=33% Similarity=0.851 Sum_probs=26.9
Q ss_pred cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 152 CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 152 ~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.|.|.|+..||.+||.. ...||+|++++..
T Consensus 53 ~CnHaFH~HCI~rWL~T---k~~CPld~q~w~~ 82 (88)
T COG5194 53 VCNHAFHDHCIYRWLDT---KGVCPLDRQTWVL 82 (88)
T ss_pred ecchHHHHHHHHHHHhh---CCCCCCCCceeEE
Confidence 69999999999999998 6799999987654
No 61
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=96.91 E-value=0.00045 Score=51.84 Aligned_cols=47 Identities=26% Similarity=0.509 Sum_probs=38.3
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
...|-.|...-...++++|||..|..|..-+- ...||+|.+++...+
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~r-----YngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGER-----YNGCPFCGTPFEFDD 53 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChhh-----ccCCCCCCCcccCCC
Confidence 45788888888888999999999999976544 348999999987654
No 62
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.00057 Score=68.25 Aligned_cols=56 Identities=25% Similarity=0.693 Sum_probs=46.7
Q ss_pred CCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 133 GSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
.+.-.||||+....+|..+ --|-+||+.|+..++.+ ...||+-..+....+++.+|
T Consensus 298 ~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~---~~~CPVT~~p~~v~~l~rl~ 354 (357)
T KOG0826|consen 298 PDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN---YGHCPVTGYPASVDHLIRLF 354 (357)
T ss_pred CccccChhHHhccCCCceEEecceEEeHHHHHHHHHh---cCCCCccCCcchHHHHHHHh
Confidence 3556999999999998655 56999999999999998 66899999988777666554
No 63
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.63 E-value=0.00089 Score=65.92 Aligned_cols=42 Identities=40% Similarity=0.871 Sum_probs=35.5
Q ss_pred ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
...|.||++...+-+.++|||. -|..|-++ ...||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr-------m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR-------MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc-------cccCchHHHHHH
Confidence 5699999999999999999996 59999543 447999998764
No 64
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.59 E-value=0.0006 Score=65.61 Aligned_cols=51 Identities=35% Similarity=0.912 Sum_probs=36.7
Q ss_pred ccccccccCCCC-Cc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562 135 FFDCNICLDLSR-DP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190 (422)
Q Consensus 135 ~~~C~ICl~~~~-~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~ 190 (422)
...|..|.-... ++ .+|.|+|+||..|...-. ...||+|++++....+..+
T Consensus 3 ~VhCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~~-----~~~C~lCkk~ir~i~l~~s 55 (233)
T KOG4739|consen 3 FVHCNKCFRFPSQDPFFLTACRHVFCEPCLKASS-----PDVCPLCKKSIRIIQLNRS 55 (233)
T ss_pred eEEeccccccCCCCceeeeechhhhhhhhcccCC-----ccccccccceeeeeecccc
Confidence 357888876554 33 478999999999976422 2389999999776665554
No 65
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=96.56 E-value=0.00073 Score=53.90 Aligned_cols=48 Identities=29% Similarity=0.747 Sum_probs=37.8
Q ss_pred ccccccCCCCC------------cEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 137 DCNICLDLSRD------------PVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 137 ~C~ICl~~~~~------------pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.|-||.-.|.. |.+. -|.|.|+..||.+|+........||+||..+..
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 77777777743 2222 699999999999999987767899999987654
No 66
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.33 E-value=0.0018 Score=65.56 Aligned_cols=44 Identities=34% Similarity=0.803 Sum_probs=35.4
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
....|.||++...+.+.+||||..| |..-..+ ...||+||..+.
T Consensus 304 ~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~----l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 304 QPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH----LPQCPVCRQRIR 347 (355)
T ss_pred CCCceEEecCCccceeeecCCcEEE--chHHHhh----CCCCchhHHHHH
Confidence 4569999999999999999999977 7664443 345999998764
No 67
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=96.10 E-value=0.0014 Score=72.46 Aligned_cols=52 Identities=33% Similarity=0.756 Sum_probs=43.5
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~ 189 (422)
+.|.||.+ ...++++.|||.||..|+...+.. .....||.|+..+....++.
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~-~~~~~~~~cr~~l~~~~l~s 506 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQ-SENAPCPLCRNVLKEKKLLS 506 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhcccc-ccCCCCcHHHHHHHHHHHhh
Confidence 79999999 888899999999999999988776 33447999999887666554
No 68
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=95.85 E-value=0.0033 Score=64.88 Aligned_cols=35 Identities=26% Similarity=0.678 Sum_probs=31.6
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHH
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLH 167 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~ 167 (422)
++++.|+||...|.+|++++|||..|..|....+.
T Consensus 2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~ 36 (699)
T KOG4367|consen 2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV 36 (699)
T ss_pred cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence 46789999999999999999999999999886654
No 69
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=95.75 E-value=0.0051 Score=51.87 Aligned_cols=28 Identities=36% Similarity=0.922 Sum_probs=25.4
Q ss_pred cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 152 CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 152 ~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
.|.|.|+..||.+|++. ...||+|.++-
T Consensus 80 ~CNHaFH~hCisrWlkt---r~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKT---RNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhh---cCcCCCcCcce
Confidence 69999999999999999 77999998764
No 70
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.0061 Score=62.73 Aligned_cols=48 Identities=31% Similarity=0.746 Sum_probs=36.4
Q ss_pred CccccccccCCCCCc---EEccCCCccChhhHHHHHHhc--C---CCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVH--S---DAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~--~---~~~~CPvCr~~ 181 (422)
..+.|.||++...-. +.+||+|+||..|+..++..+ . ....||-|+..
T Consensus 183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 457999999988653 468999999999999988762 1 23468776543
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.53 E-value=0.0096 Score=60.02 Aligned_cols=47 Identities=34% Similarity=0.796 Sum_probs=39.7
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHH--HHhcCCCCCCCCCCcc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRW--LHVHSDAKECPVCKGE 181 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~w--l~~~~~~~~CPvCr~~ 181 (422)
+++...|.||..-+.-..++||+|..|.-|..+. |.. .+.||+||..
T Consensus 58 DEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~---~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYM---QKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHh---ccCCCccccc
Confidence 5567899999999988889999999999998763 333 6689999986
No 72
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.51 E-value=0.008 Score=59.73 Aligned_cols=46 Identities=33% Similarity=0.745 Sum_probs=38.3
Q ss_pred ccccccccCCCCC------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 135 FFDCNICLDLSRD------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 135 ~~~C~ICl~~~~~------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
.+.|-||-+.|.. |..+.|||+||..|+...+.. ....||.||.+.
T Consensus 3 ~~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~--~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 3 FPECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGN--SRILCPFCRETT 54 (296)
T ss_pred CCceeecCccccccCcccCCcccccCceehHhHHHHHhcC--ceeeccCCCCcc
Confidence 4689999999854 567889999999999987765 466899999983
No 73
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=95.24 E-value=0.014 Score=51.55 Aligned_cols=53 Identities=28% Similarity=0.701 Sum_probs=43.5
Q ss_pred CccccccccCCCCCcEEc----cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 134 SFFDCNICLDLSRDPVVT----CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l----~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
....|.||.+...+...+ .||-..|..|....|+.-.-...||+|+..+....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~ 135 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS 135 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence 346999999999887644 59999999999998877555789999999887543
No 74
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.21 E-value=0.005 Score=66.24 Aligned_cols=42 Identities=36% Similarity=0.836 Sum_probs=34.2
Q ss_pred CccccccccCCCC----CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSR----DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~----~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
+.+.|+||+..|. .|+.+-|||+.|..|+...... .|| |+..
T Consensus 10 ~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn~-----scp-~~~D 55 (861)
T KOG3161|consen 10 LLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYNA-----SCP-TKRD 55 (861)
T ss_pred HHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhhc-----cCC-CCcc
Confidence 4578999988874 5889999999999999987766 788 6543
No 75
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.08 E-value=0.0073 Score=61.73 Aligned_cols=48 Identities=23% Similarity=0.522 Sum_probs=38.8
Q ss_pred CccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
-.+.|..|-+.+-.. -.+||.|.||..|+..++.+ ....+||.|++-.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~-n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILEN-NGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHh-CCCCCCccHHHHH
Confidence 357999999988432 25899999999999999976 4578999999543
No 76
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.06 E-value=0.015 Score=59.80 Aligned_cols=56 Identities=27% Similarity=0.506 Sum_probs=42.5
Q ss_pred CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562 133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~ 188 (422)
...|.|||=.+--.+ |+.+.|||+.|..-+.+..+....+.+||.|-......+..
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~~~~~k 390 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQLASDTK 390 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccCHHhcc
Confidence 356899997665543 68999999999999999887744458999997665544443
No 77
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.99 E-value=0.0073 Score=59.84 Aligned_cols=53 Identities=32% Similarity=0.683 Sum_probs=40.0
Q ss_pred CCCccccccccCCCCCc---EEccCCCccChhhHHHHHHh-----------------c---CCCCCCCCCCccccc
Q 014562 132 DGSFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHV-----------------H---SDAKECPVCKGEVTV 184 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~-----------------~---~~~~~CPvCr~~l~~ 184 (422)
......|.||+.-|.+. +.++|-|.|+..|+.++|.. | .-...||+|+..|..
T Consensus 112 n~p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~ 187 (368)
T KOG4445|consen 112 NHPNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKI 187 (368)
T ss_pred CCCCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccc
Confidence 33456999999888653 46899999999999988764 0 112469999998764
No 78
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=94.78 E-value=0.019 Score=56.71 Aligned_cols=49 Identities=27% Similarity=0.640 Sum_probs=37.3
Q ss_pred ccccccCC-CCCcE----EccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 137 DCNICLDL-SRDPV----VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 137 ~C~ICl~~-~~~pv----~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.||+|... |..|- +-+|||..|..|+...+.. +...||.|...+-..++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~--g~~~CpeC~~iLRk~nf 55 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSL--GPAQCPECMVILRKNNF 55 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhc--CCCCCCcccchhhhccc
Confidence 59999854 45552 3499999999999998876 46789999887655443
No 79
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=94.49 E-value=0.043 Score=49.91 Aligned_cols=34 Identities=21% Similarity=0.553 Sum_probs=25.8
Q ss_pred ccccccccCCCCCcEEccC------------CCcc-ChhhHHHHHHh
Q 014562 135 FFDCNICLDLSRDPVVTCC------------GHLF-CWPCLYRWLHV 168 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~C------------GH~F-C~~CI~~wl~~ 168 (422)
...||||++...++|++-| +-.| +..|+.++.+.
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka 48 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKA 48 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHH
Confidence 4589999999999998754 3222 46899988765
No 80
>PHA03096 p28-like protein; Provisional
Probab=93.73 E-value=0.031 Score=55.72 Aligned_cols=46 Identities=20% Similarity=0.342 Sum_probs=35.1
Q ss_pred cccccccCCCCC--------cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 136 FDCNICLDLSRD--------PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 136 ~~C~ICl~~~~~--------pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
..|.||++.... .++..|-|.||..|+..|-........||.|+..
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 489999998753 2456899999999999998874445567776654
No 81
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=93.72 E-value=0.041 Score=55.48 Aligned_cols=51 Identities=20% Similarity=0.456 Sum_probs=36.9
Q ss_pred ccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562 137 DCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 137 ~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~ 189 (422)
.||+|++.+... .--+||-..|..|+...-.. -...||.||......++.-
T Consensus 16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~--lngrcpacrr~y~denv~~ 70 (480)
T COG5175 16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQN--LNGRCPACRRKYDDENVRY 70 (480)
T ss_pred cCcccccccccccCCcccCCcccHHHHHHHHHHHhh--ccCCChHhhhhccccceeE
Confidence 499999987543 23478988888887654433 2458999999888777653
No 82
>PHA02862 5L protein; Provisional
Probab=93.50 E-value=0.048 Score=48.88 Aligned_cols=50 Identities=30% Similarity=0.700 Sum_probs=39.0
Q ss_pred ccccccCCCCCcEEccCCC-----ccChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562 137 DCNICLDLSRDPVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~ 188 (422)
.|-||.+.-.+. .-||.- .-|..|+.+|+.. +++..|+.|+.++..+..+
T Consensus 4 iCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~-S~k~~CeLCkteY~Ik~~y 58 (156)
T PHA02862 4 ICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINY-SKKKECNLCKTKYNIKKTY 58 (156)
T ss_pred EEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhc-CCCcCccCCCCeEEEEEcc
Confidence 799999987655 467753 4689999999976 7788999999988654433
No 83
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=93.39 E-value=0.075 Score=48.41 Aligned_cols=51 Identities=29% Similarity=0.577 Sum_probs=38.7
Q ss_pred CCccccccccCCCCCcEEccCCC-----ccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.....|-||.+.... ...||.- ..|..|+.+|+.. ++...|+.|+.++...
T Consensus 6 ~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~-s~~~~CeiC~~~Y~i~ 61 (162)
T PHA02825 6 LMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINT-SKNKSCKICNGPYNIK 61 (162)
T ss_pred CCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhc-CCCCcccccCCeEEEE
Confidence 345699999988643 3456653 3489999999997 5678999999987654
No 84
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.39 E-value=0.059 Score=51.60 Aligned_cols=47 Identities=28% Similarity=0.655 Sum_probs=37.5
Q ss_pred cccccccCCCCCc--EEccCCCccChhhHHHHHHhc-----CCCCCCCCCCccc
Q 014562 136 FDCNICLDLSRDP--VVTCCGHLFCWPCLYRWLHVH-----SDAKECPVCKGEV 182 (422)
Q Consensus 136 ~~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl~~~-----~~~~~CPvCr~~l 182 (422)
-.|.+|...+... +.+.|-|.|+|.|+..|...- ..-..||.|..++
T Consensus 51 pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 51 PNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 3899999988654 678999999999999998762 2234799998765
No 85
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=93.21 E-value=0.06 Score=39.57 Aligned_cols=43 Identities=23% Similarity=0.593 Sum_probs=21.1
Q ss_pred cccccCCCCCc--EEc--cCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 138 CNICLDLSRDP--VVT--CCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 138 C~ICl~~~~~p--v~l--~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
||+|.+.+... ... +||+.+|..|+...+.. ....||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~--~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILEN--EGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTS--S-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhc--cCCCCCCCCCCC
Confidence 78888887322 123 68999999998887763 356899999864
No 86
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=93.06 E-value=0.039 Score=45.99 Aligned_cols=30 Identities=27% Similarity=0.655 Sum_probs=25.2
Q ss_pred CccccccccCCCCCcE--EccCCCccChhhHH
Q 014562 134 SFFDCNICLDLSRDPV--VTCCGHLFCWPCLY 163 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv--~l~CGH~FC~~CI~ 163 (422)
+...|++|...+...+ ..||||.||..|+.
T Consensus 77 ~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 77 ESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 3458999999998764 56999999999975
No 87
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=93.04 E-value=0.02 Score=62.82 Aligned_cols=52 Identities=27% Similarity=0.793 Sum_probs=42.3
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
.+.|+||...+.+|+.+.|-|.||..|+..-+....+...||+|+..+....
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 4699999999999999999999999999875555344678999986654433
No 88
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=93.03 E-value=0.055 Score=54.38 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=36.7
Q ss_pred CCCccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 132 DGSFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
..+.+.||||.+.+..|+. -.=||.-|..|-.+. ...||.|+.++.
T Consensus 45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~~------~~~CP~Cr~~~g 91 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTKV------SNKCPTCRLPIG 91 (299)
T ss_pred chhhccCchhhccCcccceecCCCcEehhhhhhhh------cccCCccccccc
Confidence 3467899999999999863 355999999997632 347999999876
No 89
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.88 E-value=0.073 Score=51.65 Aligned_cols=37 Identities=30% Similarity=0.458 Sum_probs=32.6
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHh
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~ 168 (422)
..++..|.+|+..+.+|++++=||.||..||.+++-.
T Consensus 40 iK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~ila 76 (303)
T KOG3039|consen 40 IKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYILA 76 (303)
T ss_pred cCCcceeeeecccccCCccCCCCeeeeHHHHHHHHHH
Confidence 3466789999999999999999999999999987654
No 90
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=92.66 E-value=0.039 Score=55.07 Aligned_cols=44 Identities=27% Similarity=0.575 Sum_probs=32.2
Q ss_pred ccccccccCCCCC-cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSRD-PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~~-pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.-.|.-|--.+.. ..+++|.|+||.+|... .. .+.||.|-.++.
T Consensus 90 VHfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~---dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 90 VHFCDRCDFPIAIYGRMIPCKHVFCLECARS--DS---DKICPLCDDRVQ 134 (389)
T ss_pred eEeecccCCcceeeecccccchhhhhhhhhc--Cc---cccCcCcccHHH
Confidence 3577888776654 35789999999999753 22 458999977653
No 91
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=92.60 E-value=0.03 Score=64.73 Aligned_cols=43 Identities=42% Similarity=0.994 Sum_probs=38.4
Q ss_pred CccccccccCCCC-CcEEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 134 SFFDCNICLDLSR-DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 134 ~~~~C~ICl~~~~-~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
..+.|.||++.+. ...+..|||.+|..|+..|+.. +..||.|+
T Consensus 1152 ~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~---~s~~~~~k 1195 (1394)
T KOG0298|consen 1152 GHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA---SSRCPICK 1195 (1394)
T ss_pred cccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH---hccCcchh
Confidence 4459999999998 5678899999999999999998 66899997
No 92
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.23 E-value=0.09 Score=48.69 Aligned_cols=54 Identities=31% Similarity=0.647 Sum_probs=39.0
Q ss_pred CCCccccccccCCCCCcE-------EccCCCccChhhHHHHHHhcC---C-----CCCCCCCCcccccC
Q 014562 132 DGSFFDCNICLDLSRDPV-------VTCCGHLFCWPCLYRWLHVHS---D-----AKECPVCKGEVTVK 185 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv-------~l~CGH~FC~~CI~~wl~~~~---~-----~~~CPvCr~~l~~~ 185 (422)
++....|-||+.+--+.. ...||..|+.-|+..||+..- . -..||.|-.++..+
T Consensus 162 dd~~~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK 230 (234)
T KOG3268|consen 162 DDELGACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK 230 (234)
T ss_pred chhhhcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence 344558899987654442 357999999999999998621 1 13799999887653
No 93
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.15 E-value=0.065 Score=59.72 Aligned_cols=41 Identities=27% Similarity=0.613 Sum_probs=34.5
Q ss_pred CccccccccCCCCCcE-EccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
+.-.|..|-..+.-|+ ...|||.||..|+. . +...||.|+.
T Consensus 839 q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~---~~~~CP~C~~ 880 (933)
T KOG2114|consen 839 QVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---D---KEDKCPKCLP 880 (933)
T ss_pred eeeeecccCCccccceeeeecccHHHHHhhc---c---CcccCCccch
Confidence 4469999999999996 57999999999988 2 2568999976
No 94
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=91.20 E-value=0.071 Score=47.32 Aligned_cols=34 Identities=32% Similarity=0.734 Sum_probs=27.7
Q ss_pred ccccccccCCCCC--cE-EccCC------CccChhhHHHHHHh
Q 014562 135 FFDCNICLDLSRD--PV-VTCCG------HLFCWPCLYRWLHV 168 (422)
Q Consensus 135 ~~~C~ICl~~~~~--pv-~l~CG------H~FC~~CI~~wl~~ 168 (422)
...|.||++.+.+ ++ .++|| |.||..|+.+|-..
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 5699999999987 65 45776 67999999999544
No 95
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.59 E-value=0.24 Score=48.29 Aligned_cols=55 Identities=20% Similarity=0.380 Sum_probs=44.0
Q ss_pred CCccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 133 GSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
...|.|||-.-.+..- ++.+|||+|-..-+.+.-.. .|++|...+...+++.+-+
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeikas-----~C~~C~a~y~~~dvIvlNg 167 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIKAS-----VCHVCGAAYQEDDVIVLNG 167 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHhhhc-----cccccCCcccccCeEeeCC
Confidence 4578999987777654 46699999999998876644 8999999999988887543
No 96
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=90.58 E-value=0.26 Score=35.29 Aligned_cols=40 Identities=20% Similarity=0.586 Sum_probs=24.6
Q ss_pred cccccCCCCCcEEc---cCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 138 CNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
|.+|.++...++.= .|+=.++..|+..++.... ...||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~-~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRS-NPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-S-S-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCC-CCCCcCC
Confidence 78899999888754 4998999999999998733 3379988
No 97
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=90.36 E-value=0.17 Score=36.82 Aligned_cols=40 Identities=33% Similarity=0.960 Sum_probs=26.3
Q ss_pred cccccCCCCC--cEEccCCC-----ccChhhHHHHHHhcCCCCCCCCC
Q 014562 138 CNICLDLSRD--PVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 138 C~ICl~~~~~--pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
|-||++...+ +.+.||+= ..|..|+.+|+.. ++...|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~-~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRE-SGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHH-HT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHh-cCCCcCCCC
Confidence 6788877643 46778863 4689999999997 446679988
No 98
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=90.26 E-value=0.23 Score=36.68 Aligned_cols=45 Identities=29% Similarity=0.698 Sum_probs=23.4
Q ss_pred cccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcc
Q 014562 136 FDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGE 181 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~ 181 (422)
+.|||....+..|+. ..|.|.-|.+ +..|+.. ......||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcCc
Confidence 689999999999984 6999997754 3345443 2345789999764
No 99
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=90.13 E-value=0.25 Score=55.21 Aligned_cols=50 Identities=28% Similarity=0.769 Sum_probs=38.6
Q ss_pred CCccccccccCCCCC--cEE--ccCCCccChhhHHHHHHh----cCCCCCCCCCCccc
Q 014562 133 GSFFDCNICLDLSRD--PVV--TCCGHLFCWPCLYRWLHV----HSDAKECPVCKGEV 182 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~--pv~--l~CGH~FC~~CI~~wl~~----~~~~~~CPvCr~~l 182 (422)
...+.|-||++.+.. ++. ..|-|+|+..||..|... ......||.|....
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 356899999999864 442 468999999999999876 22457899998543
No 100
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.41 E-value=0.16 Score=56.91 Aligned_cols=34 Identities=32% Similarity=0.528 Sum_probs=26.9
Q ss_pred ccccccccCCCC-Cc-EEccCCCccChhhHHHHHHh
Q 014562 135 FFDCNICLDLSR-DP-VVTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 135 ~~~C~ICl~~~~-~p-v~l~CGH~FC~~CI~~wl~~ 168 (422)
...|.+|...+. .| ++.+|||.||+.||.+....
T Consensus 817 ~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v~~ 852 (911)
T KOG2034|consen 817 QDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHVLS 852 (911)
T ss_pred ccchHHhcchhhcCcceeeeccchHHHHHHHHHHHc
Confidence 349999998774 45 46799999999999876543
No 101
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=89.05 E-value=0.18 Score=59.05 Aligned_cols=51 Identities=27% Similarity=0.603 Sum_probs=37.7
Q ss_pred CccccccccCCCCC--c-EEccCCCccChhhHHHHHHhc--C-----CCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRD--P-VVTCCGHLFCWPCLYRWLHVH--S-----DAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~--p-v~l~CGH~FC~~CI~~wl~~~--~-----~~~~CPvCr~~l~~ 184 (422)
....|-||+...-. | +.+.|+|.|+..|..+.|... + +-..||+|+.++..
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence 34589999876532 3 678999999999998877761 1 12479999887754
No 102
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=88.93 E-value=0.23 Score=49.81 Aligned_cols=54 Identities=28% Similarity=0.477 Sum_probs=40.9
Q ss_pred CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
...|.||+=.+.-.+ |+++.|||+.-..-+.+.-++..-.+.||.|-..-...+
T Consensus 334 Hs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~~~~~~ 390 (396)
T COG5109 334 HSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEMSKYEN 390 (396)
T ss_pred cceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcchhhhh
Confidence 356899987666543 789999999999999887776444689999965544433
No 103
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=88.75 E-value=0.32 Score=54.19 Aligned_cols=56 Identities=29% Similarity=0.634 Sum_probs=43.4
Q ss_pred CCCccccccccCCC--CCcEEccCCCc-----cChhhHHHHHHhcCCCCCCCCCCcccccCCce
Q 014562 132 DGSFFDCNICLDLS--RDPVVTCCGHL-----FCWPCLYRWLHVHSDAKECPVCKGEVTVKNIT 188 (422)
Q Consensus 132 ~~~~~~C~ICl~~~--~~pv~l~CGH~-----FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~ 188 (422)
.+++..|-||...- .+|..-||..+ .|.+|+.+|+.. ++..+|-+|+.++..++++
T Consensus 9 N~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~-s~~~kCdiChy~~~Fk~IY 71 (1175)
T COG5183 9 NEDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMEC-SGTKKCDICHYEYKFKDIY 71 (1175)
T ss_pred CccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhc-CCCcceeeecceeeeeeec
Confidence 34557999998665 44666677643 689999999995 7788999999998877665
No 104
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=88.59 E-value=0.13 Score=49.65 Aligned_cols=46 Identities=24% Similarity=0.572 Sum_probs=34.9
Q ss_pred cccccccCC-CCCcE----Ecc-CCCccChhhHHHHHHhcCCCCCCC--CCCcccc
Q 014562 136 FDCNICLDL-SRDPV----VTC-CGHLFCWPCLYRWLHVHSDAKECP--VCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~-~~~pv----~l~-CGH~FC~~CI~~wl~~~~~~~~CP--vCr~~l~ 183 (422)
..||||... +-.|- +-| |-|..|.+|+.+.+.. +...|| -|.+-+.
T Consensus 11 ~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~--GpAqCP~~gC~kILR 64 (314)
T COG5220 11 RRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSR--GPAQCPYKGCGKILR 64 (314)
T ss_pred ccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcC--CCCCCCCccHHHHHH
Confidence 489999854 45552 234 9999999999999987 466899 7876553
No 105
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=88.25 E-value=0.29 Score=46.75 Aligned_cols=39 Identities=28% Similarity=0.703 Sum_probs=30.7
Q ss_pred cccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 138 CNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 138 C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
|-+|.+.-..-+++||-|. +|..|-.. ...||+|+....
T Consensus 161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~-------~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 161 CRKCGEREATVLLLPCRHLCLCGICDES-------LRICPICRSPKT 200 (207)
T ss_pred ceecCcCCceEEeecccceEeccccccc-------CccCCCCcChhh
Confidence 9999988877778899987 79999432 447999987543
No 106
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=88.03 E-value=0.15 Score=37.28 Aligned_cols=43 Identities=26% Similarity=0.699 Sum_probs=24.9
Q ss_pred ccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 137 DCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.|--|+-.. --++.|. |..|..|+...+.. +..||+|..++..
T Consensus 4 nCKsCWf~~--k~Li~C~dHYLCl~CLt~ml~~---s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN--KGLIKCSDHYLCLNCLTLMLSR---SDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SS---SSEETTTTEE---
T ss_pred cChhhhhcC--CCeeeecchhHHHHHHHHHhcc---ccCCCcccCcCcc
Confidence 566666433 3356676 88899999988877 7789999998764
No 107
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=87.98 E-value=0.32 Score=50.06 Aligned_cols=36 Identities=22% Similarity=0.862 Sum_probs=28.0
Q ss_pred CCCccChhhHHHHHHhc----------CCCCCCCCCCcccccCCce
Q 014562 153 CGHLFCWPCLYRWLHVH----------SDAKECPVCKGEVTVKNIT 188 (422)
Q Consensus 153 CGH~FC~~CI~~wl~~~----------~~~~~CPvCr~~l~~~~l~ 188 (422)
|.-..|..|+.+|+... +++..||+||+.+...|+.
T Consensus 311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV~ 356 (358)
T PF10272_consen 311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDVC 356 (358)
T ss_pred ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeeee
Confidence 44456889999999862 3467899999999887764
No 108
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.36 E-value=0.27 Score=48.70 Aligned_cols=36 Identities=25% Similarity=0.677 Sum_probs=31.7
Q ss_pred CccccccccCCCCCcEEccC----CCccChhhHHHHHHhc
Q 014562 134 SFFDCNICLDLSRDPVVTCC----GHLFCWPCLYRWLHVH 169 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~C----GH~FC~~CI~~wl~~~ 169 (422)
..+.|.+|.+.+.+.....| .|.||..|-.+.++.+
T Consensus 267 apLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~Q 306 (352)
T KOG3579|consen 267 APLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQQ 306 (352)
T ss_pred CceeehhhhhhhccCceeecCCCcccceecccCHHHHHhh
Confidence 45899999999999887777 6999999999988873
No 109
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.18 E-value=0.36 Score=50.26 Aligned_cols=55 Identities=27% Similarity=0.680 Sum_probs=36.6
Q ss_pred CccccccccCCCCCc----EEccCCCccChhhHHHHHHhc---CCCCCCCC--CCcccccCCce
Q 014562 134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVH---SDAKECPV--CKGEVTVKNIT 188 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~---~~~~~CPv--Cr~~l~~~~l~ 188 (422)
....|.||......+ .+..|+|.||..|+.+++... +....||. |...++...+.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~ 208 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCR 208 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHh
Confidence 456999999444333 256899999999999988763 23456654 55555544433
No 110
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=86.82 E-value=0.31 Score=48.38 Aligned_cols=42 Identities=29% Similarity=0.666 Sum_probs=35.0
Q ss_pred cccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 136 FDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 136 ~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
..||||.+.+.. +..++|||..+..|+...... ...||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~---~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICE---GYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhcc---CCCCCcccc
Confidence 459999988754 457899999999999988776 389999988
No 111
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=85.89 E-value=0.4 Score=53.27 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=34.7
Q ss_pred ccccccccCCCCCcE----Ec---cCCCccChhhHHHHHHhc---CCCCCCCCCCccc
Q 014562 135 FFDCNICLDLSRDPV----VT---CCGHLFCWPCLYRWLHVH---SDAKECPVCKGEV 182 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv----~l---~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l 182 (422)
...|.||...+..++ +. .|+|.||..||..|.... ..+..|++|..-|
T Consensus 96 s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci 153 (1134)
T KOG0825|consen 96 SDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECV 153 (1134)
T ss_pred ccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHh
Confidence 457888888777743 33 499999999999998761 2245678887653
No 112
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.78 E-value=0.37 Score=47.94 Aligned_cols=37 Identities=24% Similarity=0.770 Sum_probs=29.3
Q ss_pred CCCccChhhHHHHHHh----------cCCCCCCCCCCcccccCCcee
Q 014562 153 CGHLFCWPCLYRWLHV----------HSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 153 CGH~FC~~CI~~wl~~----------~~~~~~CPvCr~~l~~~~l~~ 189 (422)
|....|.+|+.+|+.. +.++..||.||+.+...++.-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~~ 371 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVHC 371 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeeeE
Confidence 5566789999999865 355789999999998877653
No 113
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.71 E-value=1.4 Score=35.03 Aligned_cols=33 Identities=36% Similarity=0.713 Sum_probs=26.7
Q ss_pred CCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 154 GHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 154 GH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
-|+||..|....|.. .||-|...+....+.|.-
T Consensus 28 EcTFCadCae~~l~g-----~CPnCGGelv~RP~RPaa 60 (84)
T COG3813 28 ECTFCADCAENRLHG-----LCPNCGGELVARPIRPAA 60 (84)
T ss_pred eeehhHhHHHHhhcC-----cCCCCCchhhcCcCChHH
Confidence 478999999987765 899999988877776643
No 114
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.32 E-value=1.5 Score=46.39 Aligned_cols=35 Identities=31% Similarity=0.724 Sum_probs=30.6
Q ss_pred CccccccccCCCCC-cEEccCCCccChhhHHHHHHh
Q 014562 134 SFFDCNICLDLSRD-PVVTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 134 ~~~~C~ICl~~~~~-pv~l~CGH~FC~~CI~~wl~~ 168 (422)
....|.||.+.+.. .+.+.|||.||..|+..++..
T Consensus 69 ~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 69 GDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred ccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 45699999999986 667899999999999998887
No 115
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.58 E-value=2 Score=42.17 Aligned_cols=51 Identities=27% Similarity=0.574 Sum_probs=37.6
Q ss_pred CCCccccccccCCCCCcE----EccCC-----CccChhhHHHHHHhcC-----CCCCCCCCCccc
Q 014562 132 DGSFFDCNICLDLSRDPV----VTCCG-----HLFCWPCLYRWLHVHS-----DAKECPVCKGEV 182 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv----~l~CG-----H~FC~~CI~~wl~~~~-----~~~~CPvCr~~l 182 (422)
.+.+..|=||+..-++.. +-||. |..|..|+..|...+. ....||.|+.+.
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 345679999998877643 34663 6789999999998721 245799998864
No 116
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=71.40 E-value=0.4 Score=49.41 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=40.0
Q ss_pred ccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 135 FFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 135 ~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.-.|.||...++.- ..+.|||.++..||.+|+.. ...||.|+..+...
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~---~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLAT---KRKLPSCRRELPKN 247 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHH---HHHhHHHHhhhhhh
Confidence 34899999988764 25789999999999999998 66899999887543
No 117
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=67.64 E-value=4.2 Score=30.87 Aligned_cols=44 Identities=27% Similarity=0.593 Sum_probs=28.8
Q ss_pred ccccccCCCCCc--EEccCC--CccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 137 DCNICLDLSRDP--VVTCCG--HLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 137 ~C~ICl~~~~~p--v~l~CG--H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.|-.|-..+... -..-|. .+||..|....+.. .||-|...+...
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l~~-----~CPNCgGelv~R 54 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETMLNG-----VCPNCGGELVRR 54 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHhcC-----cCcCCCCccccC
Confidence 466665554321 112232 37999999998866 899998877654
No 118
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=67.31 E-value=0.37 Score=38.19 Aligned_cols=40 Identities=23% Similarity=0.475 Sum_probs=23.2
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+.||.|...+..- =||.+|..|-..+.. ...||-|..++.
T Consensus 2 ~~CP~C~~~L~~~----~~~~~C~~C~~~~~~----~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQ----GGHYHCEACQKDYKK----EAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEE----TTEEEETTT--EEEE----EEE-TTT-SB-E
T ss_pred CcCCCCCCccEEe----CCEEECcccccccee----cccCCCcccHHH
Confidence 5899999875432 189999999876443 347999998874
No 119
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=66.61 E-value=6.4 Score=31.88 Aligned_cols=46 Identities=26% Similarity=0.458 Sum_probs=19.9
Q ss_pred cccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||-+.+-- +. ...|+--.|..|+.--.+. +.+.||.|+.+..
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErke--g~q~CpqCkt~yk 62 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKE--GNQVCPQCKTRYK 62 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHT--S-SB-TTT--B--
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhc--CcccccccCCCcc
Confidence 489999988732 22 2367878899998754443 5789999997665
No 120
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=66.58 E-value=1.1 Score=44.75 Aligned_cols=47 Identities=23% Similarity=0.388 Sum_probs=24.4
Q ss_pred CCCccccccccCCCCCcEEccC-----CCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCC-----GHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~C-----GH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
.++.-.||||-....-.++..= .|.+|..|-..|-.. ...||.|...
T Consensus 169 ~w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~---R~~Cp~Cg~~ 220 (290)
T PF04216_consen 169 GWQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFV---RIKCPYCGNT 220 (290)
T ss_dssp -TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE-----TTS-TTT---
T ss_pred CccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeec---CCCCcCCCCC
Confidence 3455799999998776665433 367899999999876 6689999654
No 121
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=66.06 E-value=2.8 Score=43.68 Aligned_cols=41 Identities=29% Similarity=0.706 Sum_probs=29.0
Q ss_pred ccccccccCCCCCc-----EEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 135 FFDCNICLDLSRDP-----VVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 135 ~~~C~ICl~~~~~p-----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
-..|++|.-.+.-. ++-.|||-||+.|...|... ...|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~---~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTH---NGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhC---CccccCc
Confidence 35899998876432 23349999999999998875 3345443
No 122
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=64.61 E-value=3.6 Score=45.96 Aligned_cols=42 Identities=31% Similarity=0.820 Sum_probs=28.1
Q ss_pred cccccccCCCCCc--EEccCCCccChhhHHHHHHhcCCCCCCCC-CCc
Q 014562 136 FDCNICLDLSRDP--VVTCCGHLFCWPCLYRWLHVHSDAKECPV-CKG 180 (422)
Q Consensus 136 ~~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl~~~~~~~~CPv-Cr~ 180 (422)
+.|.||--..... +...|||+.+..|...|+.. ...||. |..
T Consensus 1029 ~~C~~C~l~V~gss~~Cg~C~Hv~H~sc~~eWf~~---gd~CpsGCGC 1073 (1081)
T KOG0309|consen 1029 FQCAICHLAVRGSSNFCGTCGHVGHTSCMMEWFRT---GDVCPSGCGC 1073 (1081)
T ss_pred eeeeeEeeEeeccchhhccccccccHHHHHHHHhc---CCcCCCCCCc
Confidence 3455544333322 23579999999999999998 447886 443
No 123
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=63.25 E-value=1.9 Score=43.52 Aligned_cols=45 Identities=27% Similarity=0.468 Sum_probs=34.0
Q ss_pred CccccccccCCCCCcEEcc----CC--CccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDPVVTC----CG--HLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~----CG--H~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
..-.||||-....-.++.. =| |.+|.-|-..|-.. ...||.|...
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~---R~~C~~Cg~~ 233 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYV---RVKCSHCEES 233 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCccccc---CccCCCCCCC
Confidence 4559999999876554432 34 56799999999877 6689999763
No 124
>PF10235 Cript: Microtubule-associated protein CRIPT; InterPro: IPR019367 The CRIPT protein is a cytoskeletal protein involved in microtubule production. This C-terminal domain is essential for binding to the PDZ3 domain of the SAP90 protein, one of a super-family of PDZ-containing proteins that play an important role in coupling the membrane ion channels with their signalling partners [].
Probab=59.94 E-value=5.1 Score=33.34 Aligned_cols=36 Identities=28% Similarity=0.827 Sum_probs=28.4
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|-||......+ ||.||..|... ...|.+|.+.+.
T Consensus 45 ~~C~~CK~~v~q~-----g~~YCq~CAYk-------kGiCamCGKki~ 80 (90)
T PF10235_consen 45 SKCKICKTKVHQP-----GAKYCQTCAYK-------KGICAMCGKKIL 80 (90)
T ss_pred ccccccccccccC-----CCccChhhhcc-------cCcccccCCeec
Confidence 4899999877654 78899999542 448999998874
No 125
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=59.76 E-value=15 Score=38.78 Aligned_cols=57 Identities=18% Similarity=0.404 Sum_probs=49.8
Q ss_pred cccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCC
Q 014562 136 FDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~ 195 (422)
+.|.|--+...+||+. .-||+|-..-|.+++.. ..+||+-..+++..++.++.....
T Consensus 1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e---~G~DPIt~~pLs~eelV~Ik~~~~ 58 (506)
T KOG0289|consen 1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE---TGKDPITNEPLSIEELVEIKVPAQ 58 (506)
T ss_pred CeecccCCCCCCccccccccchHHHHHHHHHHHH---cCCCCCCCCcCCHHHeeecccccc
Confidence 3699999999999864 78999999999999998 669999999999999998765543
No 126
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=59.22 E-value=3.8 Score=30.33 Aligned_cols=39 Identities=21% Similarity=0.399 Sum_probs=22.1
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
.+.||.|...+... .++.-|...-... .....||+|...
T Consensus 2 ~f~CP~C~~~~~~~-------~L~~H~~~~H~~~-~~~v~CPiC~~~ 40 (54)
T PF05605_consen 2 SFTCPYCGKGFSES-------SLVEHCEDEHRSE-SKNVVCPICSSR 40 (54)
T ss_pred CcCCCCCCCccCHH-------HHHHHHHhHCcCC-CCCccCCCchhh
Confidence 57899999854432 1333343332222 224679999764
No 127
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=58.25 E-value=8.7 Score=42.71 Aligned_cols=55 Identities=22% Similarity=0.512 Sum_probs=35.6
Q ss_pred CccccccccCCCCCcE-EccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCcee
Q 014562 134 SFFDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~ 189 (422)
--+.|+|+...+.-|. -..|+|.=|.+-.. ++.. ......||+|.+.+...++.-
T Consensus 305 vSL~CPl~~~Rm~~P~r~~~CkHlQcFD~~~-~lq~n~~~pTW~CPVC~~~~~~e~l~i 362 (636)
T KOG2169|consen 305 VSLNCPLSKMRMSLPARGHTCKHLQCFDALS-YLQMNEQKPTWRCPVCQKAAPFEGLII 362 (636)
T ss_pred eEecCCcccceeecCCcccccccceecchhh-hHHhccCCCeeeCccCCccccccchhh
Confidence 4579999988777664 35677765554332 2222 344678999999887766543
No 128
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=57.38 E-value=7.3 Score=39.61 Aligned_cols=45 Identities=22% Similarity=0.470 Sum_probs=34.4
Q ss_pred cccccccCCCCC--c--EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD--P--VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~--p--v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|+||.+.... . +-.+|||..|..|+...... ...||.|+++..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~---~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDG---DGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhccccc---CCCCCccCCccc
Confidence 589999997732 2 23478999999998877765 668999996543
No 129
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=57.03 E-value=6.4 Score=38.86 Aligned_cols=50 Identities=20% Similarity=0.527 Sum_probs=37.8
Q ss_pred ccccccccCCCCC----cEEccCC-----CccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 135 FFDCNICLDLSRD----PVVTCCG-----HLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 135 ~~~C~ICl~~~~~----pv~l~CG-----H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
...|-||...... +...||. +..+..|+..|+.. ++...|.+|...+...
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~-~~~~~CeiC~~~~~~~ 136 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSI-KGNITCEICKSFFINV 136 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhcc-ccCeeeecccccceec
Confidence 4689999986643 4567775 34689999999996 5578999998876544
No 130
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=54.52 E-value=4.2 Score=40.84 Aligned_cols=47 Identities=28% Similarity=0.703 Sum_probs=39.1
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
++-.|-||...+.-|... .|+|.||..|...|... ...||.|+..+.
T Consensus 104 ~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~---~~~~~d~~~~~~ 151 (324)
T KOG0824|consen 104 DHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAM---GNDCPDCRGKIS 151 (324)
T ss_pred CccceeeeeeeEEecccccCceeeeeecCCchhhhh---hhccchhhcCcC
Confidence 455899999999888655 69999999999999987 568999987654
No 131
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=54.11 E-value=4.9 Score=40.73 Aligned_cols=44 Identities=27% Similarity=0.548 Sum_probs=33.4
Q ss_pred CccccccccCCCCCcEEc---cCC--CccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVT---CCG--HLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l---~CG--H~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
..-.||||-....-.++. .=| |.+|.-|-..|-.. ...||.|..
T Consensus 186 ~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~---R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVV---RVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCccccc---CccCCCCCC
Confidence 456999999987655432 234 45799999999877 668999975
No 132
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=53.28 E-value=4.4 Score=42.13 Aligned_cols=45 Identities=24% Similarity=0.555 Sum_probs=0.0
Q ss_pred ccccccccCCCCCc--------------EEccCCCccChhhHHHHHHh---cCCCCCCCCCCccc
Q 014562 135 FFDCNICLDLSRDP--------------VVTCCGHLFCWPCLYRWLHV---HSDAKECPVCKGEV 182 (422)
Q Consensus 135 ~~~C~ICl~~~~~p--------------v~l~CGH~FC~~CI~~wl~~---~~~~~~CPvCr~~l 182 (422)
...|||=+..+.-| |-+.|||++-+.= |-.. ......||+|+..-
T Consensus 277 rpQCPVglnTL~fp~~~~~~~~~~~qP~VYl~CGHVhG~h~---Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 277 RPQCPVGLNTLVFPSKSRKDVPDERQPWVYLNCGHVHGYHN---WGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp -----------------------------------------------------------------
T ss_pred CCCCCcCCCccccccccccccccccCceeeccccceeeecc---cccccccccccccCCCccccC
Confidence 35788876655322 4578999987653 5432 11267899998753
No 133
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.23 E-value=2.7 Score=41.66 Aligned_cols=45 Identities=29% Similarity=0.623 Sum_probs=35.5
Q ss_pred cccccccCCCCC------cEEcc--------CCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 136 FDCNICLDLSRD------PVVTC--------CGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 136 ~~C~ICl~~~~~------pv~l~--------CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
..|.||...+.. |.++. |||..|..|+...+.... ..||.|+...
T Consensus 208 ~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~--~~cp~~~~~~ 266 (296)
T KOG4185|consen 208 KLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAG--IKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhh--hcCCccccee
Confidence 579999988862 33455 999999999999887723 7899998753
No 134
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=53.00 E-value=11 Score=43.98 Aligned_cols=46 Identities=28% Similarity=0.707 Sum_probs=33.4
Q ss_pred cccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||-+...- +. .-.||--.|..|.. +-. ..++..||.|+....
T Consensus 18 qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYE-YEr-~eG~q~CPqCktrYk 70 (1079)
T PLN02638 18 QVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYE-YER-KDGNQSCPQCKTKYK 70 (1079)
T ss_pred ceeeecccccCcCCCCCEEEEeccCCCccccchhh-hhh-hcCCccCCccCCchh
Confidence 389999998742 22 23677779999984 333 346889999998765
No 135
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=52.15 E-value=16 Score=31.14 Aligned_cols=46 Identities=26% Similarity=0.572 Sum_probs=29.8
Q ss_pred ccccccCCCCCcE--------EccC---CCccChhhHHHHHHh------cCCCCCCCCCCccc
Q 014562 137 DCNICLDLSRDPV--------VTCC---GHLFCWPCLYRWLHV------HSDAKECPVCKGEV 182 (422)
Q Consensus 137 ~C~ICl~~~~~pv--------~l~C---GH~FC~~CI~~wl~~------~~~~~~CPvCr~~l 182 (422)
.|..|..--.+.. ...| .=.||..||..++.. ......||.|+.-.
T Consensus 9 ~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~CrgiC 71 (105)
T PF10497_consen 9 TCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRGIC 71 (105)
T ss_pred CchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCCee
Confidence 6666666443332 1345 556999999987754 23467899998844
No 136
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=51.88 E-value=6.6 Score=43.78 Aligned_cols=50 Identities=28% Similarity=0.565 Sum_probs=34.0
Q ss_pred CCccccccccCCCCCcE----------EccCCCc--------------------cChhhHHHHHHh-----cCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPV----------VTCCGHL--------------------FCWPCLYRWLHV-----HSDAKECPV 177 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv----------~l~CGH~--------------------FC~~CI~~wl~~-----~~~~~~CPv 177 (422)
.|.-.|.-|+..+.+|. .|.||-. .|..|...+-.. |-....||.
T Consensus 99 pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp~ 178 (750)
T COG0068 99 PDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACPK 178 (750)
T ss_pred CchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCcc
Confidence 46679999999998872 3566653 488888876543 333467888
Q ss_pred CCccc
Q 014562 178 CKGEV 182 (422)
Q Consensus 178 Cr~~l 182 (422)
|.-.+
T Consensus 179 CGP~~ 183 (750)
T COG0068 179 CGPHL 183 (750)
T ss_pred cCCCe
Confidence 85543
No 137
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=51.45 E-value=7.8 Score=24.77 Aligned_cols=10 Identities=20% Similarity=0.335 Sum_probs=5.3
Q ss_pred ccccccCCCC
Q 014562 137 DCNICLDLSR 146 (422)
Q Consensus 137 ~C~ICl~~~~ 146 (422)
.||-|...+.
T Consensus 2 ~CP~C~~~V~ 11 (26)
T PF10571_consen 2 TCPECGAEVP 11 (26)
T ss_pred cCCCCcCCch
Confidence 4555555553
No 138
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=49.45 E-value=10 Score=29.80 Aligned_cols=13 Identities=38% Similarity=1.045 Sum_probs=9.8
Q ss_pred ccChhhHHHHHHh
Q 014562 156 LFCWPCLYRWLHV 168 (422)
Q Consensus 156 ~FC~~CI~~wl~~ 168 (422)
.||+.|+..|+..
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999986
No 139
>PLN02189 cellulose synthase
Probab=48.67 E-value=14 Score=43.13 Aligned_cols=46 Identities=28% Similarity=0.611 Sum_probs=33.3
Q ss_pred cccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||.+.+.. +. .-.||--.|..|.. +-.. .++..||.|++...
T Consensus 35 ~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cye-yer~-eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 35 QVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYE-YERR-EGTQNCPQCKTRYK 87 (1040)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhh-cCCccCcccCCchh
Confidence 399999998742 22 23577778999995 3332 46889999999875
No 140
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=48.62 E-value=15 Score=41.19 Aligned_cols=45 Identities=24% Similarity=0.435 Sum_probs=32.6
Q ss_pred cccccccCCCCCcE--EccCCCccChhhHHHHHHhcCCCCCCCC--CCcccc
Q 014562 136 FDCNICLDLSRDPV--VTCCGHLFCWPCLYRWLHVHSDAKECPV--CKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPv--Cr~~l~ 183 (422)
..|.+|-..+..-. .--|||.-|..|++.|+.. ...||. |.....
T Consensus 780 ~~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~---~s~ca~~~C~~~c~ 828 (839)
T KOG0269|consen 780 AKCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFK---ASPCAKSICPHLCH 828 (839)
T ss_pred cCceeecceeeeeEeecccccccccHHHHHHHHhc---CCCCccccCCcccc
Confidence 37888877665432 2469999999999999987 556766 655443
No 141
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=48.34 E-value=11 Score=33.70 Aligned_cols=29 Identities=38% Similarity=0.733 Sum_probs=19.0
Q ss_pred CCCccccccccCC-CCCcEEccCCCccChhhHHHH
Q 014562 132 DGSFFDCNICLDL-SRDPVVTCCGHLFCWPCLYRW 165 (422)
Q Consensus 132 ~~~~~~C~ICl~~-~~~pv~l~CGH~FC~~CI~~w 165 (422)
.++..+|.||+.. |.+ .||| -|..|-.+.
T Consensus 62 v~ddatC~IC~KTKFAD----G~GH-~C~YCq~r~ 91 (169)
T KOG3799|consen 62 VGDDATCGICHKTKFAD----GCGH-NCSYCQTRF 91 (169)
T ss_pred cCcCcchhhhhhccccc----ccCc-ccchhhhhH
Confidence 3466799999865 333 5888 466665443
No 142
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=46.88 E-value=9.4 Score=38.66 Aligned_cols=43 Identities=7% Similarity=-0.189 Sum_probs=33.8
Q ss_pred CccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
..+.|.+|-.-....+..+|||. ||..|.. + +....||+|...
T Consensus 342 s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~---s~~~~~~~c~~~ 385 (394)
T KOG2113|consen 342 SSLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--A---SASPTSSTCDHN 385 (394)
T ss_pred hhcccccccCceeeeEeecCCcccChhhhhh--c---ccCCcccccccc
Confidence 35689999988887788899997 8999976 2 235699999653
No 143
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=46.25 E-value=14 Score=41.26 Aligned_cols=46 Identities=35% Similarity=0.663 Sum_probs=36.2
Q ss_pred ccccccCCCCCcEEccCCC-ccChhhHHHHHHhc---CCCCCCCCCCccc
Q 014562 137 DCNICLDLSRDPVVTCCGH-LFCWPCLYRWLHVH---SDAKECPVCKGEV 182 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH-~FC~~CI~~wl~~~---~~~~~CPvCr~~l 182 (422)
.|+||-..+.-...-.||| ..|..|..+..... .....||+|+..+
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~ 51 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREV 51 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCcccccce
Confidence 6999999998888889999 89999998765431 1245689999854
No 144
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=45.75 E-value=18 Score=36.74 Aligned_cols=52 Identities=21% Similarity=0.583 Sum_probs=31.7
Q ss_pred CccccccccCCCC--------C---------c--EEccCCCccChhhHHHHHHh---c---CCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSR--------D---------P--VVTCCGHLFCWPCLYRWLHV---H---SDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~--------~---------p--v~l~CGH~FC~~CI~~wl~~---~---~~~~~CPvCr~~l~~~ 185 (422)
.+..||+|+..-. + | ...||||..-.+-..-|..- | .-...||.|-..+...
T Consensus 340 ~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ge 416 (429)
T KOG3842|consen 340 RERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAGE 416 (429)
T ss_pred ccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhccC
Confidence 4569999987521 1 1 24699996444444445433 2 2245799998887643
No 145
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=45.44 E-value=10 Score=36.38 Aligned_cols=43 Identities=23% Similarity=0.610 Sum_probs=35.0
Q ss_pred ccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
...|.+|..+....+. =.||-.++..|+..++.. ...||.|.-
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~---~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQR---RDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcc---cCcCCchhc
Confidence 4589999999887653 477777899999999987 668999943
No 146
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=45.44 E-value=7 Score=40.73 Aligned_cols=50 Identities=24% Similarity=0.608 Sum_probs=0.0
Q ss_pred ccccccccCCC--------------CC---c--EEccCCCccChhhHHHHHHh---cCC---CCCCCCCCccccc
Q 014562 135 FFDCNICLDLS--------------RD---P--VVTCCGHLFCWPCLYRWLHV---HSD---AKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~--------------~~---p--v~l~CGH~FC~~CI~~wl~~---~~~---~~~CPvCr~~l~~ 184 (422)
...||+|+..- .+ | +..||||..-.+...-|-.- |+. ...||.|-.++..
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~g 402 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLDG 402 (416)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCcccC
Confidence 56999999652 11 1 24699998767777767554 221 3579999888864
No 147
>PLN02436 cellulose synthase A
Probab=44.51 E-value=17 Score=42.51 Aligned_cols=46 Identities=30% Similarity=0.680 Sum_probs=33.2
Q ss_pred cccccccCCCCC-----cEE--ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD-----PVV--TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv~--l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||-+.+.. +.+ -.||--.|..|.. +-.. .++..||.|++...
T Consensus 37 ~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cye-yer~-eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 37 QTCQICGDEIELTVDGEPFVACNECAFPVCRPCYE-YERR-EGNQACPQCKTRYK 89 (1094)
T ss_pred ccccccccccCcCCCCCEEEeeccCCCccccchhh-hhhh-cCCccCcccCCchh
Confidence 399999998732 222 3577779999995 3332 46889999998765
No 148
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=44.46 E-value=11 Score=37.20 Aligned_cols=46 Identities=24% Similarity=0.322 Sum_probs=36.3
Q ss_pred ccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
.+.|||-...+..|++ ..|||+|=..-|..++.. .....||+-.++
T Consensus 176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~-~~~i~CPv~gC~ 222 (262)
T KOG2979|consen 176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCD-EITIRCPVLGCE 222 (262)
T ss_pred cccCchhhhhhhchhhhcCcCcchhhhhHHHHhcc-CceeecccccCC
Confidence 4699999999999974 699999999999988865 224568875443
No 149
>PLN02195 cellulose synthase A
Probab=44.29 E-value=23 Score=41.04 Aligned_cols=46 Identities=22% Similarity=0.431 Sum_probs=34.1
Q ss_pred cccccccCCCC-----CcE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSR-----DPV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~-----~pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||-+... ++. .-.||--.|..|.. +-.. .++..||.|+....
T Consensus 7 ~~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCye-yer~-eg~q~CpqCkt~Yk 59 (977)
T PLN02195 7 PICATCGEEVGVDSNGEAFVACHECSYPLCKACLE-YEIK-EGRKVCLRCGGPYD 59 (977)
T ss_pred ccceecccccCcCCCCCeEEEeccCCCccccchhh-hhhh-cCCccCCccCCccc
Confidence 48999999763 232 24688889999984 3333 46889999999877
No 150
>PF15616 TerY-C: TerY-C metal binding domain
Probab=42.60 E-value=14 Score=32.87 Aligned_cols=42 Identities=29% Similarity=0.541 Sum_probs=31.6
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.-.||-|-..+.-.+- .||++||..= ++..+||-|.......
T Consensus 77 ~PgCP~CGn~~~fa~C-~CGkl~Ci~g--------~~~~~CPwCg~~g~~~ 118 (131)
T PF15616_consen 77 APGCPHCGNQYAFAVC-GCGKLFCIDG--------EGEVTCPWCGNEGSFG 118 (131)
T ss_pred CCCCCCCcChhcEEEe-cCCCEEEeCC--------CCCEECCCCCCeeeec
Confidence 3699999988665544 8999999763 3467999998876543
No 151
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=42.28 E-value=7.7 Score=43.92 Aligned_cols=51 Identities=18% Similarity=0.341 Sum_probs=36.4
Q ss_pred ccccccccCCCCCc--EEccCCCccChhhHHHHH---HhcCCCCCCCCCCcccccC
Q 014562 135 FFDCNICLDLSRDP--VVTCCGHLFCWPCLYRWL---HVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 135 ~~~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl---~~~~~~~~CPvCr~~l~~~ 185 (422)
.-.|..|.....+- +...|||.||..|+..|. ........|+.|+......
T Consensus 229 ~~mC~~C~~tlfn~hw~C~~C~~~~Cl~C~r~~~p~~~~~e~a~k~~~~~~~C~~~ 284 (889)
T KOG1356|consen 229 REMCDRCETTLFNIHWRCPRCGFGVCLDCYRKWYPRLSKEEVAEKCEFSWLKCNKG 284 (889)
T ss_pred chhhhhhcccccceeEEccccCCeeeecchhhccccchHhHhhhhhhHHHHhcCCc
Confidence 45899999887764 456899999999999995 1112234688877665443
No 152
>PF14353 CpXC: CpXC protein
Probab=40.00 E-value=21 Score=30.96 Aligned_cols=49 Identities=16% Similarity=0.061 Sum_probs=27.1
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+||-|...+...+.+.--=..-..=....+...-....||.|.+.+..
T Consensus 2 itCP~C~~~~~~~v~~~I~~~~~p~l~e~il~g~l~~~~CP~Cg~~~~~ 50 (128)
T PF14353_consen 2 ITCPHCGHEFEFEVWTSINADEDPELKEKILDGSLFSFTCPSCGHKFRL 50 (128)
T ss_pred cCCCCCCCeeEEEEEeEEcCcCCHHHHHHHHcCCcCEEECCCCCCceec
Confidence 5788888888665433222112223333333221224689999998754
No 153
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=39.73 E-value=33 Score=25.92 Aligned_cols=41 Identities=24% Similarity=0.477 Sum_probs=28.7
Q ss_pred ccccccccCCC--CCcEE--ccCCCccChhhHHHHHHhcCCCCCCCC--CCccc
Q 014562 135 FFDCNICLDLS--RDPVV--TCCGHLFCWPCLYRWLHVHSDAKECPV--CKGEV 182 (422)
Q Consensus 135 ~~~C~ICl~~~--~~pv~--l~CGH~FC~~CI~~wl~~~~~~~~CPv--Cr~~l 182 (422)
...|++|-+.| .+.++ ..||-.+++.|.. + ...|-. |...+
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~---~----~g~C~~~~c~~~~ 51 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWE---K----AGGCINYSCGTGF 51 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHh---h----CCceEeccCCCCc
Confidence 35899999999 45554 4799999999953 3 235655 65544
No 154
>PRK04023 DNA polymerase II large subunit; Validated
Probab=39.65 E-value=23 Score=41.19 Aligned_cols=47 Identities=23% Similarity=0.369 Sum_probs=33.0
Q ss_pred CccccccccCCCCCcEEccCCC-----ccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGH-----LFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH-----~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
....|+-|-..........||. .||..|-.. .....||.|...+...
T Consensus 625 g~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~CG~~-----~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 625 GRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRCGIE-----VEEDECEKCGREPTPY 676 (1121)
T ss_pred cCccCCCCCCcCCcccCCCCCCCCCcceeCccccCc-----CCCCcCCCCCCCCCcc
Confidence 4569999998865545566984 599999332 2245799999876543
No 155
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=38.46 E-value=11 Score=41.24 Aligned_cols=41 Identities=27% Similarity=0.570 Sum_probs=26.3
Q ss_pred CccccccccCC-----C-CCcE--EccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 134 SFFDCNICLDL-----S-RDPV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~-----~-~~pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
..+.|.+|... | .+.+ ...||++||..|+.. . ...||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r---~---s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRR---K---SPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhc---c---CCCCCchHH
Confidence 45789999432 2 1112 247999999999653 2 345999943
No 156
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=37.78 E-value=7.4 Score=28.95 Aligned_cols=14 Identities=43% Similarity=1.329 Sum_probs=12.6
Q ss_pred cCCCccChhhHHHH
Q 014562 152 CCGHLFCWPCLYRW 165 (422)
Q Consensus 152 ~CGH~FC~~CI~~w 165 (422)
.|||.||..|...|
T Consensus 45 ~C~~~fC~~C~~~~ 58 (64)
T smart00647 45 KCGFSFCFRCKVPW 58 (64)
T ss_pred CCCCeECCCCCCcC
Confidence 68999999998877
No 158
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=37.16 E-value=22 Score=26.55 Aligned_cols=26 Identities=31% Similarity=0.907 Sum_probs=13.8
Q ss_pred ccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 151 TCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 151 l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
..|++.||.+|=. +. |..-..||-|.
T Consensus 25 ~~C~~~FC~dCD~-fi--HE~LH~CPGC~ 50 (51)
T PF07975_consen 25 PKCKNHFCIDCDV-FI--HETLHNCPGCE 50 (51)
T ss_dssp TTTT--B-HHHHH-TT--TTTS-SSSTT-
T ss_pred CCCCCccccCcCh-hh--hccccCCcCCC
Confidence 3689999999943 22 22355799883
No 159
>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=37.10 E-value=38 Score=35.45 Aligned_cols=63 Identities=24% Similarity=0.386 Sum_probs=52.4
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTRE 199 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~ 199 (422)
....|.+-+-.|.+|+.+.-|-+|-..-|..||+. ...=|+-.+++..++++++....+...+
T Consensus 39 P~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk---~g~nP~tG~kl~~~dLIkL~F~Kns~ge 101 (518)
T KOG0883|consen 39 PFNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK---HGTNPITGQKLDGKDLIKLKFHKNSEGE 101 (518)
T ss_pred ChhhceeccccccCcccccCCcEEeeehhhHHHHH---cCCCCCCCCccccccceeeeeccCCCCc
Confidence 34589999999999999999999999999999999 4467888888988898887766554433
No 160
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=35.74 E-value=23 Score=39.51 Aligned_cols=29 Identities=24% Similarity=0.471 Sum_probs=20.4
Q ss_pred EEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 149 VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 149 v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
|..|-|-+||.+|-.+--.. ...|-+|-.
T Consensus 42 vqVPtGpWfCrKCesqeraa---rvrCeLCP~ 70 (900)
T KOG0956|consen 42 VQVPTGPWFCRKCESQERAA---RVRCELCPH 70 (900)
T ss_pred EecCCCchhhhhhhhhhhhc---cceeecccC
Confidence 35688999999997754433 456777754
No 161
>PLN02400 cellulose synthase
Probab=35.51 E-value=22 Score=41.63 Aligned_cols=46 Identities=26% Similarity=0.559 Sum_probs=33.2
Q ss_pred cccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-.|.||-+...- +. .-.||--.|..|.. +-. +.++..||.|+....
T Consensus 37 qiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYE-YER-keGnq~CPQCkTrYk 89 (1085)
T PLN02400 37 QICQICGDDVGVTETGDVFVACNECAFPVCRPCYE-YER-KDGTQCCPQCKTRYR 89 (1085)
T ss_pred ceeeecccccCcCCCCCEEEEEccCCCccccchhh-eec-ccCCccCcccCCccc
Confidence 399999998743 22 23677779999984 222 346889999998765
No 162
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.15 E-value=32 Score=29.84 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=29.2
Q ss_pred ccccccCCCCCcE--------------EccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 137 DCNICLDLSRDPV--------------VTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 137 ~C~ICl~~~~~pv--------------~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
.|.-|+..|.++. -..|++.||.+|=.-+-.. -..||-|.
T Consensus 57 ~C~~C~~~f~~~~~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~---Lh~CPGC~ 110 (112)
T TIGR00622 57 FCFGCQGPFPKPPVSPFDELKDSHRYVCAVCKNVFCVDCDVFVHES---LHCCPGCI 110 (112)
T ss_pred cccCcCCCCCCcccccccccccccceeCCCCCCccccccchhhhhh---ccCCcCCC
Confidence 5888888876531 3579999999996655444 45799995
No 163
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=34.06 E-value=12 Score=28.73 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=16.3
Q ss_pred ccccccccCCCCCc----EEccCCCccChhhHHHH
Q 014562 135 FFDCNICLDLSRDP----VVTCCGHLFCWPCLYRW 165 (422)
Q Consensus 135 ~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~w 165 (422)
...|.+|...|.-- .--.||++||..|....
T Consensus 9 ~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~ 43 (69)
T PF01363_consen 9 ASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQR 43 (69)
T ss_dssp -SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EE
T ss_pred CCcCcCcCCcCCCceeeEccCCCCCEECCchhCCE
Confidence 45899999999432 13579999999997643
No 165
>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;
Probab=33.61 E-value=26 Score=25.59 Aligned_cols=31 Identities=23% Similarity=0.471 Sum_probs=22.8
Q ss_pred ccccccCCCCCc----EEccCCCccChhhHHHHHH
Q 014562 137 DCNICLDLSRDP----VVTCCGHLFCWPCLYRWLH 167 (422)
Q Consensus 137 ~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~ 167 (422)
.|.+|...|.-- .-..||+.||..|......
T Consensus 4 ~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C~~~~~~ 38 (57)
T cd00065 4 SCMGCGKPFTLTRRRHHCRNCGRIFCSKCSSNRIP 38 (57)
T ss_pred cCcccCccccCCccccccCcCcCCcChHHcCCeee
Confidence 788898777542 2358999999999875443
No 166
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=32.63 E-value=35 Score=39.90 Aligned_cols=47 Identities=26% Similarity=0.629 Sum_probs=33.7
Q ss_pred ccccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 135 FFDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 135 ~~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.-.|.||-+.... +. .-.||--.|..|.. +-.. .++..||.|+....
T Consensus 15 ~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cye-ye~~-~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 15 AKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYE-YERS-EGNQCCPQCNTRYK 68 (1044)
T ss_pred cchhhccccccCcCCCCCEEEEeccCCCccccchhh-hhhh-cCCccCCccCCchh
Confidence 3489999998743 22 23677779999994 3332 46889999998765
No 167
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=31.32 E-value=41 Score=34.40 Aligned_cols=42 Identities=21% Similarity=0.465 Sum_probs=27.1
Q ss_pred cccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 136 FDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 136 ~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
..|-.|.+..... .--.|.|+||.+|=.-.-.. -..||.|..
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHes---Lh~CpgCeh 375 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHES---LHNCPGCEH 375 (378)
T ss_pred cceeeeccccCCCCcEEchhccceeeccchHHHHhh---hhcCCCcCC
Confidence 3599996655443 23579999999995422222 346999963
No 168
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=31.25 E-value=27 Score=25.75 Aligned_cols=11 Identities=27% Similarity=0.809 Sum_probs=5.9
Q ss_pred CCCCCCccccc
Q 014562 174 ECPVCKGEVTV 184 (422)
Q Consensus 174 ~CPvCr~~l~~ 184 (422)
.||+|..+|..
T Consensus 22 ~CPlC~r~l~~ 32 (54)
T PF04423_consen 22 CCPLCGRPLDE 32 (54)
T ss_dssp E-TTT--EE-H
T ss_pred cCCCCCCCCCH
Confidence 89999988764
No 169
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=31.23 E-value=19 Score=36.55 Aligned_cols=43 Identities=28% Similarity=0.626 Sum_probs=26.1
Q ss_pred cccccccCCCCCc--------------EEccCCCccChhhHHHHHHh---cCCCCCCCCCCcc
Q 014562 136 FDCNICLDLSRDP--------------VVTCCGHLFCWPCLYRWLHV---HSDAKECPVCKGE 181 (422)
Q Consensus 136 ~~C~ICl~~~~~p--------------v~l~CGH~FC~~CI~~wl~~---~~~~~~CPvCr~~ 181 (422)
-.||+=+..+.-| +-+.|||+--+. .|=.. ......||+|+..
T Consensus 291 PQCPVglnTL~~P~~~~~~~~~~~QP~vYl~CGHV~G~H---~WG~~e~~g~~~r~CPmC~~~ 350 (429)
T KOG3842|consen 291 PQCPVGLNTLAFPSKRRKRVVDEKQPWVYLNCGHVHGYH---NWGVRENTGQRERECPMCRVV 350 (429)
T ss_pred CCCCcccceeecccccccccccccCCeEEEecccccccc---ccccccccCcccCcCCeeeee
Confidence 4788777665322 468999985433 34222 1225789999763
No 170
>COG4647 AcxC Acetone carboxylase, gamma subunit [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=31.04 E-value=24 Score=31.41 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=15.5
Q ss_pred ccccCCCCCcEEccCCCccChh
Q 014562 139 NICLDLSRDPVVTCCGHLFCWP 160 (422)
Q Consensus 139 ~ICl~~~~~pv~l~CGH~FC~~ 160 (422)
-||.+.-..-+.-.|||.||..
T Consensus 61 fi~qs~~~rv~rcecghsf~d~ 82 (165)
T COG4647 61 FICQSAQKRVIRCECGHSFGDY 82 (165)
T ss_pred EEEecccccEEEEeccccccCh
Confidence 3666665554456899999975
No 171
>PRK11595 DNA utilization protein GntX; Provisional
Probab=29.18 E-value=37 Score=32.45 Aligned_cols=39 Identities=21% Similarity=0.285 Sum_probs=25.9
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.|.+|...+... .+.+|..|...+-.. ...||.|..++.
T Consensus 7 ~C~~C~~~~~~~-----~~~lC~~C~~~l~~~---~~~C~~Cg~~~~ 45 (227)
T PRK11595 7 LCWLCRMPLALS-----HWGICSVCSRALRTL---KTCCPQCGLPAT 45 (227)
T ss_pred cCccCCCccCCC-----CCcccHHHHhhCCcc---cCcCccCCCcCC
Confidence 699998766322 234799998775332 237999987643
No 172
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=29.05 E-value=17 Score=38.52 Aligned_cols=34 Identities=26% Similarity=0.600 Sum_probs=25.0
Q ss_pred ccccccccCCCCCc------E--EccCCCccChhhHHHHHHh
Q 014562 135 FFDCNICLDLSRDP------V--VTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 135 ~~~C~ICl~~~~~p------v--~l~CGH~FC~~CI~~wl~~ 168 (422)
...||.|...+..- . ..+|.|.||+.|+..|...
T Consensus 226 tk~CP~c~~~iek~~gc~~~~~~~~~c~~~FCw~Cl~~~~~h 267 (444)
T KOG1815|consen 226 TKECPKCKVPIEKDGGCNHMTCKSASCKHEFCWVCLASLSDH 267 (444)
T ss_pred CccCCCcccchhccCCccccccccCCcCCeeceeeecccccc
Confidence 34599999887542 1 1259999999997777765
No 173
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=28.96 E-value=43 Score=21.78 Aligned_cols=35 Identities=23% Similarity=0.564 Sum_probs=21.5
Q ss_pred ccccccCCCCCc--EEccCCCccChhhHHHHHHhcCCCCCCCCCCccc
Q 014562 137 DCNICLDLSRDP--VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 137 ~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
.|..|...+... .+..=+..|+..|+ .|..|..+|
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECF-----------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCC-----------CCcccCCcC
Confidence 377787777663 33344566666663 477776655
No 174
>COG3492 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=27.31 E-value=29 Score=29.03 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=11.5
Q ss_pred cChhhHHHHHHh
Q 014562 157 FCWPCLYRWLHV 168 (422)
Q Consensus 157 FC~~CI~~wl~~ 168 (422)
||..|+..|++.
T Consensus 43 FCRNCLs~Wy~e 54 (104)
T COG3492 43 FCRNCLSNWYRE 54 (104)
T ss_pred HHHHHHHHHHHH
Confidence 999999999987
No 175
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=26.81 E-value=29 Score=32.84 Aligned_cols=37 Identities=32% Similarity=0.732 Sum_probs=25.3
Q ss_pred cccccccCC-C----CC-cEE--ccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 136 FDCNICLDL-S----RD-PVV--TCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 136 ~~C~ICl~~-~----~~-pv~--l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
+.|.||.+. + .. .+. -.|+-+||..|+.. ..||.|..
T Consensus 153 fiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~--------~~CpkC~R 197 (202)
T PF13901_consen 153 FICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK--------KSCPKCAR 197 (202)
T ss_pred CCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC--------CCCCCcHh
Confidence 689999853 1 22 122 37999999999762 36999954
No 176
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.62 E-value=27 Score=39.47 Aligned_cols=40 Identities=30% Similarity=0.635 Sum_probs=29.1
Q ss_pred ccccccCCCC------C-cEEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 137 DCNICLDLSR------D-PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 137 ~C~ICl~~~~------~-pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
.|..|.+... + -+...|||.|+..|+...... . .|-.|..
T Consensus 786 rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~---~-~~~~~~~ 832 (846)
T KOG2066|consen 786 RCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLR---N-ACNIESG 832 (846)
T ss_pred hhhhhcccccccCcccceeeEEEccchhhhcccccHHHh---c-ccChhhc
Confidence 8999998765 2 247899999999999865544 1 2666643
No 177
>KOG3726 consensus Uncharacterized conserved protein [Function unknown]
Probab=25.86 E-value=36 Score=37.95 Aligned_cols=39 Identities=26% Similarity=0.493 Sum_probs=26.5
Q ss_pred ccccccCCCC----CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 137 DCNICLDLSR----DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 137 ~C~ICl~~~~----~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
.|-+|...-. -+-++.|+-.||+.| |+.- ...||+|.-.
T Consensus 656 ~C~vcq~pedse~~v~rt~~C~~~~C~~c---~~~~---~~~~~vC~~~ 698 (717)
T KOG3726|consen 656 TCKVCQLPEDSETDVCRTTFCYTPYCVAC---SLDY---ASISEVCGPD 698 (717)
T ss_pred HHHHhcCCcCccccccCccccCCcchHhh---hhhh---hccCcccCch
Confidence 7888876432 123568999999998 4444 4469999543
No 178
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.36 E-value=33 Score=36.02 Aligned_cols=32 Identities=28% Similarity=0.619 Sum_probs=25.3
Q ss_pred ccccccccCCCCCc------EEccCCCccChhhHHHHH
Q 014562 135 FFDCNICLDLSRDP------VVTCCGHLFCWPCLYRWL 166 (422)
Q Consensus 135 ~~~C~ICl~~~~~p------v~l~CGH~FC~~CI~~wl 166 (422)
.-.||-|.-.+... .-+.|||.||+-|-....
T Consensus 368 ~krCP~C~v~IEr~eGCnKM~C~~c~~~fc~~c~~~l~ 405 (445)
T KOG1814|consen 368 SKRCPKCKVVIERSEGCNKMHCTKCGTYFCWICAELLY 405 (445)
T ss_pred CCCCCcccceeecCCCccceeeccccccceeehhhhcC
Confidence 34899999888654 368999999999977544
No 179
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=24.25 E-value=47 Score=32.29 Aligned_cols=24 Identities=29% Similarity=0.643 Sum_probs=18.3
Q ss_pred cChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 157 FCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 157 FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
-|..|-...-.+ ...||+|+..--
T Consensus 196 ~C~sC~qqIHRN---APiCPlCK~KsR 219 (230)
T PF10146_consen 196 TCQSCHQQIHRN---APICPLCKAKSR 219 (230)
T ss_pred hhHhHHHHHhcC---CCCCcccccccc
Confidence 578898776655 889999987543
No 180
>PLN02248 cellulose synthase-like protein
Probab=24.18 E-value=49 Score=39.03 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=25.8
Q ss_pred cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 152 CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 152 ~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
.|++..|.+|...-++. ...||-|+.+....+
T Consensus 149 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 180 (1135)
T PLN02248 149 ECGFKICRDCYIDAVKS---GGICPGCKEPYKVTD 180 (1135)
T ss_pred cccchhHHhHhhhhhhc---CCCCCCCcccccccc
Confidence 57888899999888877 568999998875443
No 181
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.14 E-value=41 Score=30.81 Aligned_cols=26 Identities=23% Similarity=0.566 Sum_probs=21.1
Q ss_pred CccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 155 HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 155 H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
+.||..|=.+-... ||.|..++.-..
T Consensus 28 ~~fC~kCG~~tI~~------Cp~C~~~IrG~y 53 (158)
T PF10083_consen 28 EKFCSKCGAKTITS------CPNCSTPIRGDY 53 (158)
T ss_pred HHHHHHhhHHHHHH------CcCCCCCCCCce
Confidence 56999998877764 999999887554
No 182
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.63 E-value=14 Score=22.81 Aligned_cols=7 Identities=43% Similarity=1.061 Sum_probs=3.1
Q ss_pred CCCCCCc
Q 014562 174 ECPVCKG 180 (422)
Q Consensus 174 ~CPvCr~ 180 (422)
.||.|..
T Consensus 15 fC~~CG~ 21 (23)
T PF13240_consen 15 FCPNCGT 21 (23)
T ss_pred chhhhCC
Confidence 3444443
No 183
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=23.05 E-value=75 Score=32.37 Aligned_cols=43 Identities=21% Similarity=0.376 Sum_probs=28.1
Q ss_pred ccccccccCCCCCcE--------------EccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 135 FFDCNICLDLSRDPV--------------VTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv--------------~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
...|-+|+..|-.|. .-.|...||.+|=.-.-.. -..|+.|..
T Consensus 362 s~~Cf~CQ~~fp~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~---Lh~C~gCe~ 418 (421)
T COG5151 362 STHCFVCQGPFPKPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHET---LHFCIGCEL 418 (421)
T ss_pred CccceeccCCCCCCCCCcccccccccceechhhhhhhhhhhHHHHHHH---HhhCCCCcC
Confidence 357999999886542 1248888999995432222 336999854
No 184
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=22.73 E-value=12 Score=27.65 Aligned_cols=30 Identities=30% Similarity=0.715 Sum_probs=16.4
Q ss_pred ccccc--ccCCCCCc-------EE-ccCCCccChhhHHHH
Q 014562 136 FDCNI--CLDLSRDP-------VV-TCCGHLFCWPCLYRW 165 (422)
Q Consensus 136 ~~C~I--Cl~~~~~p-------v~-l~CGH~FC~~CI~~w 165 (422)
..||- |...+... +. ..||+.||..|-..|
T Consensus 19 ~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 19 RWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp C--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred cCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 47766 77665321 22 239999999998766
No 185
>PTZ00303 phosphatidylinositol kinase; Provisional
Probab=22.09 E-value=44 Score=38.04 Aligned_cols=31 Identities=19% Similarity=0.371 Sum_probs=24.0
Q ss_pred cccccccCCCCCc---------EEccCCCccChhhHHHHH
Q 014562 136 FDCNICLDLSRDP---------VVTCCGHLFCWPCLYRWL 166 (422)
Q Consensus 136 ~~C~ICl~~~~~p---------v~l~CGH~FC~~CI~~wl 166 (422)
..|..|...|..- ..-.||++||..|-....
T Consensus 461 dtC~~C~kkFfSlsK~L~~RKHHCRkCGrVFC~~CSSnRs 500 (1374)
T PTZ00303 461 DSCPSCGRAFISLSRPLGTRAHHCRSCGIRLCVFCITKRA 500 (1374)
T ss_pred CcccCcCCcccccccccccccccccCCccccCccccCCcc
Confidence 5799999999531 145799999999987554
No 186
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=21.82 E-value=46 Score=28.63 Aligned_cols=44 Identities=23% Similarity=0.311 Sum_probs=27.5
Q ss_pred ccccccccCCCCC----c-EEccCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 135 FFDCNICLDLSRD----P-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 135 ~~~C~ICl~~~~~----p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
...|.+|...|.- + +-..|+|.+|..|-.. ........|-+|.+
T Consensus 54 ~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~~--~~~~~~WlC~vC~k 102 (118)
T PF02318_consen 54 ERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGVY--SKKEPIWLCKVCQK 102 (118)
T ss_dssp CSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEEE--TSSSCCEEEHHHHH
T ss_pred CcchhhhCCcccccCCCCCcCCcCCccccCccCCc--CCCCCCEEChhhHH
Confidence 3599999886532 2 3568999999999654 11123456888865
No 187
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=21.71 E-value=48 Score=39.62 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=31.9
Q ss_pred ccccccccCCCCCcEEccCCCc-----cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-----FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-----FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.||-|-........-.||+. +|..|=...-........||.|..++..
T Consensus 667 ~rkCPkCG~~t~~~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTETYENRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCccccccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 5799999987655555668854 4888855321111113479999887643
No 188
>PF12132 DUF3587: Protein of unknown function (DUF3587); InterPro: IPR021982 This entry is represented by Hyposoter fugitivus ichnovirus, Gp7; it is a family of uncharacterised viral proteins.
Probab=21.52 E-value=61 Score=30.88 Aligned_cols=25 Identities=28% Similarity=0.595 Sum_probs=18.1
Q ss_pred CCCCcEEccCC----CccChhhHHHHHHh
Q 014562 144 LSRDPVVTCCG----HLFCWPCLYRWLHV 168 (422)
Q Consensus 144 ~~~~pv~l~CG----H~FC~~CI~~wl~~ 168 (422)
.|..|....|. |.||+.++..||..
T Consensus 150 ~f~~p~~~~C~~gHfHHyCs~HV~~WL~~ 178 (199)
T PF12132_consen 150 KFVKPSVDECEYGHFHHYCSQHVNSWLNN 178 (199)
T ss_pred cccCCCCCCCCCCCcChhhHHHHHHHHHH
Confidence 34455555564 67999999999986
No 189
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=21.14 E-value=37 Score=37.95 Aligned_cols=11 Identities=36% Similarity=0.951 Sum_probs=6.7
Q ss_pred CCCCCCCCccc
Q 014562 172 AKECPVCKGEV 182 (422)
Q Consensus 172 ~~~CPvCr~~l 182 (422)
.+.||.|.+++
T Consensus 41 ~~fC~~CG~~~ 51 (645)
T PRK14559 41 EAHCPNCGAET 51 (645)
T ss_pred cccccccCCcc
Confidence 45677776654
No 190
>KOG1729 consensus FYVE finger containing protein [General function prediction only]
Probab=20.89 E-value=19 Score=36.20 Aligned_cols=52 Identities=21% Similarity=0.473 Sum_probs=33.5
Q ss_pred CCCccccccccC-CCCCc----EEccCCCccChhhHHHHHH-h---cCCCCCCCCCCcccc
Q 014562 132 DGSFFDCNICLD-LSRDP----VVTCCGHLFCWPCLYRWLH-V---HSDAKECPVCKGEVT 183 (422)
Q Consensus 132 ~~~~~~C~ICl~-~~~~p----v~l~CGH~FC~~CI~~wl~-~---~~~~~~CPvCr~~l~ 183 (422)
+.+...|.+|.. .|..- ..-.||++||..|-..-+. . .+....|+.|-..+.
T Consensus 165 D~ea~~C~~C~~~~Ftl~~RRHHCR~CG~ivC~~Cs~n~~~l~~~~~k~~rvC~~CF~el~ 225 (288)
T KOG1729|consen 165 DSEATECMVCGCTEFTLSERRHHCRNCGDIVCAPCSRNRFLLPNLSTKPIRVCDICFEELE 225 (288)
T ss_pred cccceecccCCCccccHHHHHHHHHhcchHhhhhhhcCcccccccCCCCceecHHHHHHHh
Confidence 446779999999 44322 2458999999999765221 1 122336888866654
No 191
>PF12773 DZR: Double zinc ribbon
Probab=20.46 E-value=80 Score=22.50 Aligned_cols=28 Identities=29% Similarity=0.468 Sum_probs=13.8
Q ss_pred ccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 156 LFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 156 ~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.||..|=............||.|...+.
T Consensus 13 ~fC~~CG~~l~~~~~~~~~C~~Cg~~~~ 40 (50)
T PF12773_consen 13 KFCPHCGTPLPPPDQSKKICPNCGAENP 40 (50)
T ss_pred cCChhhcCChhhccCCCCCCcCCcCCCc
Confidence 3555554433311122456777776544
No 192
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=20.34 E-value=56 Score=31.85 Aligned_cols=11 Identities=18% Similarity=0.767 Sum_probs=9.1
Q ss_pred cccccccCCCC
Q 014562 136 FDCNICLDLSR 146 (422)
Q Consensus 136 ~~C~ICl~~~~ 146 (422)
+.||||...+.
T Consensus 3 ~~CP~C~~~l~ 13 (272)
T PRK11088 3 YQCPLCHQPLT 13 (272)
T ss_pred ccCCCCCcchh
Confidence 68999998874
No 193
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=20.30 E-value=40 Score=35.31 Aligned_cols=55 Identities=25% Similarity=0.551 Sum_probs=37.5
Q ss_pred cccccccCCCCCc--EEccCCCccChhhHHHHHHhc-------------------CC--CCCCCCCCcccccCCceec
Q 014562 136 FDCNICLDLSRDP--VVTCCGHLFCWPCLYRWLHVH-------------------SD--AKECPVCKGEVTVKNITPI 190 (422)
Q Consensus 136 ~~C~ICl~~~~~p--v~l~CGH~FC~~CI~~wl~~~-------------------~~--~~~CPvCr~~l~~~~l~~~ 190 (422)
..|+||+-.+-.. .+..|.-..|..|+.+.-... +. ...||.|..+......+++
T Consensus 75 ~ecpicflyyps~~n~~rcC~~~Ic~ecf~~~~~~~~~~pt~~a~v~~~~~f~~~s~p~~~~cp~c~t~~~~vey~~i 152 (482)
T KOG2789|consen 75 TECPICFLYYPSAKNLVRCCSETICGECFAPFGCYSFEKPTYDATVVKNLIFKRKSAPFYTPCPDCDTSWTRVEYIKI 152 (482)
T ss_pred ccCceeeeecccccchhhhhccchhhhheecccCCCcccCccccccccccccccccccccccCCccCCcccceeeecc
Confidence 5999999887654 356899999999997753320 11 1479999887554444433
No 194
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=20.18 E-value=71 Score=31.06 Aligned_cols=24 Identities=25% Similarity=0.667 Sum_probs=18.2
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHh
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~ 168 (422)
.|+||. ....+.||..|+..-+..
T Consensus 1 ~C~iC~--------~~~~~~~C~~C~~~~L~~ 24 (302)
T PF10186_consen 1 QCPICH--------NSRRRFYCANCVNNRLLE 24 (302)
T ss_pred CCCCCC--------CCCCCeECHHHHHHHHHH
Confidence 499999 456677999999875443
No 195
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=20.13 E-value=50 Score=23.92 Aligned_cols=38 Identities=18% Similarity=0.458 Sum_probs=20.3
Q ss_pred cccccCCCCCcE-E-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 138 CNICLDLSRDPV-V-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 138 C~ICl~~~~~pv-~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
|..|...+.... . ..-|..||..|+ .|-.|+.+|....
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf-----------~C~~C~~~l~~~~ 40 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF-----------KCSKCGKPLNDGD 40 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS-----------BETTTTCBTTTSS
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc-----------ccCCCCCccCCCe
Confidence 455555554332 2 255566666653 4666666665544
No 196
>smart00290 ZnF_UBP Ubiquitin Carboxyl-terminal Hydrolase-like zinc finger.
Probab=20.03 E-value=67 Score=22.82 Aligned_cols=24 Identities=21% Similarity=0.541 Sum_probs=15.7
Q ss_pred cccccCCCCCcEEccCCCccChhh
Q 014562 138 CNICLDLSRDPVVTCCGHLFCWPC 161 (422)
Q Consensus 138 C~ICl~~~~~pv~l~CGH~FC~~C 161 (422)
|..|...-.--+-+.|+|++|...
T Consensus 2 C~~C~~~~~l~~CL~C~~~~c~~~ 25 (50)
T smart00290 2 CSVCGTIENLWLCLTCGQVGCGRY 25 (50)
T ss_pred cccCCCcCCeEEecCCCCcccCCC
Confidence 666775444335577999998553
Done!