Query 014562
Match_columns 422
No_of_seqs 390 out of 2060
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 13:49:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014562.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014562hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1t1h_A Gspef-atpub14, armadill 99.5 6.3E-15 2.2E-19 116.2 2.3 66 133-200 6-71 (78)
2 2kr4_A Ubiquitin conjugation f 99.5 1.3E-14 4.5E-19 117.3 2.0 66 132-200 11-76 (85)
3 2ecw_A Tripartite motif-contai 99.4 2E-13 7E-18 108.3 8.1 65 133-197 17-84 (85)
4 2kre_A Ubiquitin conjugation f 99.4 1.5E-14 5.1E-19 120.7 1.3 67 132-201 26-92 (100)
5 3ng2_A RNF4, snurf, ring finge 99.4 5.3E-14 1.8E-18 108.5 3.6 57 133-192 8-71 (71)
6 3ztg_A E3 ubiquitin-protein li 99.4 3.8E-14 1.3E-18 115.2 2.9 65 132-197 10-76 (92)
7 2ecv_A Tripartite motif-contai 99.4 2.4E-13 8.3E-18 107.9 7.2 65 133-197 17-84 (85)
8 2egp_A Tripartite motif-contai 99.4 4.5E-14 1.5E-18 111.2 2.8 65 133-197 10-78 (79)
9 2djb_A Polycomb group ring fin 99.4 2.5E-13 8.6E-18 105.7 6.8 56 133-191 13-69 (72)
10 1wgm_A Ubiquitin conjugation f 99.4 3.2E-14 1.1E-18 118.2 1.6 68 132-202 19-87 (98)
11 2xeu_A Ring finger protein 4; 99.4 1.1E-13 3.9E-18 104.2 3.5 56 134-192 2-64 (64)
12 2ysl_A Tripartite motif-contai 99.4 2.8E-13 9.7E-18 105.1 5.2 56 132-187 17-72 (73)
13 2ecy_A TNF receptor-associated 99.4 4.1E-13 1.4E-17 102.6 4.7 54 132-187 12-65 (66)
14 3lrq_A E3 ubiquitin-protein li 99.4 2.8E-13 9.4E-18 112.4 3.9 58 134-193 21-79 (100)
15 2yur_A Retinoblastoma-binding 99.4 7.9E-13 2.7E-17 103.6 6.1 51 133-184 13-64 (74)
16 2csy_A Zinc finger protein 183 99.3 9.5E-13 3.3E-17 104.6 6.2 48 133-183 13-60 (81)
17 2yu4_A E3 SUMO-protein ligase 99.3 2.9E-13 9.8E-18 111.3 3.0 70 133-202 5-81 (94)
18 2ct2_A Tripartite motif protei 99.3 1.6E-12 5.4E-17 104.2 7.0 55 133-187 13-71 (88)
19 1jm7_A BRCA1, breast cancer ty 99.3 6.4E-13 2.2E-17 111.4 3.7 58 135-192 21-78 (112)
20 1g25_A CDK-activating kinase a 99.3 8.6E-13 3E-17 100.5 4.1 56 135-192 3-63 (65)
21 2ysj_A Tripartite motif-contai 99.3 2.1E-12 7.2E-17 97.6 6.0 47 132-178 17-63 (63)
22 4ayc_A E3 ubiquitin-protein li 99.3 5.2E-13 1.8E-17 117.0 2.8 47 135-184 53-99 (138)
23 3fl2_A E3 ubiquitin-protein li 99.3 7.5E-13 2.6E-17 113.6 3.8 58 134-193 51-109 (124)
24 2d8t_A Dactylidin, ring finger 99.3 4.9E-13 1.7E-17 103.7 2.2 52 133-187 13-64 (71)
25 2c2l_A CHIP, carboxy terminus 99.3 3.3E-13 1.1E-17 129.5 1.2 68 132-201 205-272 (281)
26 2y43_A E3 ubiquitin-protein li 99.3 8.8E-13 3E-17 108.7 3.3 59 134-195 21-80 (99)
27 2ea6_A Ring finger protein 4; 99.3 1.7E-12 6E-17 99.1 3.8 49 133-184 13-68 (69)
28 2ect_A Ring finger protein 126 99.3 2.9E-12 9.8E-17 100.9 5.0 55 133-190 13-70 (78)
29 2ckl_A Polycomb group ring fin 99.2 2.8E-12 9.7E-17 107.4 4.1 49 134-185 14-63 (108)
30 1z6u_A NP95-like ring finger p 99.2 2.7E-12 9.3E-17 114.4 3.9 59 134-194 77-136 (150)
31 2f42_A STIP1 homology and U-bo 99.2 1.6E-12 5.5E-17 119.2 1.5 67 132-200 103-169 (179)
32 2ecm_A Ring finger and CHY zin 99.2 7.1E-12 2.4E-16 91.8 4.7 47 134-183 4-54 (55)
33 4ap4_A E3 ubiquitin ligase RNF 99.2 4.2E-12 1.4E-16 108.7 3.9 58 133-193 5-69 (133)
34 2ecn_A Ring finger protein 141 99.2 2.7E-12 9.1E-17 99.0 2.2 50 133-186 13-62 (70)
35 2ecj_A Tripartite motif-contai 99.2 8.4E-12 2.9E-16 92.3 4.5 46 133-178 13-58 (58)
36 1chc_A Equine herpes virus-1 r 99.2 1.7E-11 5.9E-16 93.7 6.3 47 134-183 4-51 (68)
37 2kiz_A E3 ubiquitin-protein li 99.2 1.4E-11 4.8E-16 94.6 5.7 49 133-184 12-63 (69)
38 3hct_A TNF receptor-associated 99.2 6.8E-12 2.3E-16 106.9 4.3 60 132-193 15-74 (118)
39 1iym_A EL5; ring-H2 finger, ub 99.2 1.3E-11 4.4E-16 90.5 4.4 47 134-183 4-54 (55)
40 1x4j_A Ring finger protein 38; 99.2 1E-11 3.6E-16 97.1 4.0 48 134-184 22-72 (75)
41 2l0b_A E3 ubiquitin-protein li 99.2 1E-11 3.4E-16 101.2 3.8 49 133-184 38-89 (91)
42 1jm7_B BARD1, BRCA1-associated 99.2 5E-12 1.7E-16 107.5 1.7 55 134-193 21-76 (117)
43 3l11_A E3 ubiquitin-protein li 99.2 4.8E-12 1.6E-16 107.0 0.8 49 134-184 14-62 (115)
44 2ckl_B Ubiquitin ligase protei 99.2 1.4E-11 4.9E-16 110.6 4.0 57 134-192 53-111 (165)
45 1rmd_A RAG1; V(D)J recombinati 99.1 1.5E-11 5E-16 104.2 3.7 54 134-189 22-75 (116)
46 2ep4_A Ring finger protein 24; 99.1 3.6E-11 1.2E-15 93.5 5.1 48 134-184 14-64 (74)
47 4ap4_A E3 ubiquitin ligase RNF 99.1 1.9E-11 6.3E-16 104.6 2.8 57 133-192 70-133 (133)
48 1e4u_A Transcriptional repress 99.1 1.3E-10 4.5E-15 92.5 6.0 54 132-187 8-65 (78)
49 1bor_A Transcription factor PM 99.1 3.3E-11 1.1E-15 89.5 2.3 46 133-184 4-49 (56)
50 1v87_A Deltex protein 2; ring- 99.1 5.7E-11 2E-15 100.0 3.9 50 135-184 25-94 (114)
51 3knv_A TNF receptor-associated 99.1 2.3E-11 7.9E-16 107.3 1.4 51 132-184 28-78 (141)
52 3htk_C E3 SUMO-protein ligase 99.0 5.7E-11 1.9E-15 114.4 3.5 66 130-196 176-244 (267)
53 3hcs_A TNF receptor-associated 99.0 1.3E-10 4.4E-15 104.8 4.6 60 132-193 15-74 (170)
54 2ecl_A Ring-box protein 2; RNF 99.0 1E-10 3.6E-15 93.3 3.4 49 135-186 15-78 (81)
55 2bay_A PRE-mRNA splicing facto 99.0 1.2E-10 4.2E-15 88.4 3.4 55 135-192 3-58 (61)
56 2y1n_A E3 ubiquitin-protein li 98.9 4.3E-10 1.5E-14 114.2 4.5 51 135-187 332-382 (389)
57 4ic3_A E3 ubiquitin-protein li 98.9 2.5E-10 8.6E-15 89.5 1.7 43 135-184 24-67 (74)
58 2vje_A E3 ubiquitin-protein li 98.9 5.3E-10 1.8E-14 85.4 3.5 53 134-191 7-62 (64)
59 3dpl_R Ring-box protein 1; ubi 98.9 6.9E-10 2.3E-14 93.4 4.1 47 135-184 37-101 (106)
60 2vje_B MDM4 protein; proto-onc 98.8 1.7E-09 5.7E-14 82.3 3.1 52 135-191 7-61 (63)
61 2ecg_A Baculoviral IAP repeat- 98.8 2.7E-09 9.2E-14 83.6 3.0 43 135-184 25-68 (75)
62 2d8s_A Cellular modulator of i 98.7 1E-08 3.6E-13 81.8 6.0 52 133-185 13-71 (80)
63 4a0k_B E3 ubiquitin-protein li 98.7 2.1E-09 7.2E-14 92.0 0.5 46 136-184 49-112 (117)
64 2ea5_A Cell growth regulator w 98.7 1.6E-08 5.6E-13 78.1 5.4 45 133-184 13-58 (68)
65 2yho_A E3 ubiquitin-protein li 98.6 6E-09 2.1E-13 82.8 1.0 43 135-184 18-61 (79)
66 1wim_A KIAA0161 protein; ring 98.6 8E-09 2.7E-13 84.2 1.3 48 134-181 4-61 (94)
67 3t6p_A Baculoviral IAP repeat- 98.5 2E-08 6.8E-13 100.8 2.2 44 134-184 294-338 (345)
68 2ct0_A Non-SMC element 1 homol 98.3 4.1E-07 1.4E-11 71.6 4.9 49 134-183 14-63 (74)
69 1vyx_A ORF K3, K3RING; zinc-bi 98.2 1.3E-06 4.6E-11 65.8 4.0 50 134-184 5-59 (60)
70 3k1l_B Fancl; UBC, ring, RWD, 98.1 9.2E-07 3.2E-11 88.1 3.2 52 133-184 306-373 (381)
71 3vk6_A E3 ubiquitin-protein li 97.9 5.9E-06 2E-10 68.2 3.5 49 137-187 3-52 (101)
72 3nw0_A Non-structural maintena 96.9 0.00073 2.5E-08 64.2 5.0 50 134-184 179-229 (238)
73 3m62_A Ubiquitin conjugation f 96.5 0.00043 1.5E-08 77.1 0.3 69 131-202 887-956 (968)
74 2jun_A Midline-1; B-BOX, TRIM, 96.0 0.0028 9.4E-08 51.6 2.4 32 135-166 3-37 (101)
75 2ko5_A Ring finger protein Z; 94.3 0.016 5.5E-07 47.1 1.8 49 134-186 27-75 (99)
76 2cs3_A Protein C14ORF4, MY039 91.7 0.17 5.7E-06 40.0 4.1 45 133-177 13-63 (93)
77 3i2d_A E3 SUMO-protein ligase 89.6 0.28 9.6E-06 49.3 4.6 54 135-189 249-305 (371)
78 4fo9_A E3 SUMO-protein ligase 88.4 0.39 1.3E-05 48.1 4.7 54 135-189 215-271 (360)
79 1weo_A Cellulose synthase, cat 75.7 3.1 0.00011 33.4 4.3 47 136-184 17-70 (93)
80 2lv9_A Histone-lysine N-methyl 72.5 1.3 4.5E-05 35.9 1.5 46 133-179 26-74 (98)
81 2lri_C Autoimmune regulator; Z 71.3 3.1 0.0001 31.3 3.2 44 136-181 13-59 (66)
82 1wd2_A Ariadne-1 protein homol 69.2 1.1 3.8E-05 33.2 0.3 33 136-168 7-47 (60)
83 2k16_A Transcription initiatio 61.3 2 6.9E-05 32.7 0.4 50 134-183 17-70 (75)
84 2lbm_A Transcriptional regulat 60.9 5.9 0.0002 34.4 3.4 48 132-179 60-115 (142)
85 1m3v_A FLIN4, fusion of the LI 60.2 4.1 0.00014 33.7 2.2 50 135-187 32-84 (122)
86 2d8v_A Zinc finger FYVE domain 60.0 5.8 0.0002 30.0 2.7 32 132-164 5-37 (67)
87 1wfk_A Zinc finger, FYVE domai 59.1 4.9 0.00017 31.9 2.4 33 132-164 6-42 (88)
88 3mpx_A FYVE, rhogef and PH dom 58.6 2 6.9E-05 43.0 0.0 49 134-182 374-430 (434)
89 2rgt_A Fusion of LIM/homeobox 57.7 9 0.00031 33.4 4.1 48 134-186 32-79 (169)
90 2yt5_A Metal-response element- 56.6 1.7 5.9E-05 32.2 -0.7 50 133-182 4-62 (66)
91 1joc_A EEA1, early endosomal a 55.8 4.2 0.00014 34.4 1.5 29 135-163 69-101 (125)
92 1weu_A Inhibitor of growth fam 55.0 7.5 0.00026 31.2 2.8 44 134-181 35-85 (91)
93 1y02_A CARP2, FYVE-ring finger 54.5 1.5 5.2E-05 37.1 -1.5 43 134-179 18-64 (120)
94 2yw8_A RUN and FYVE domain-con 54.1 5.9 0.0002 30.8 2.0 31 133-163 17-51 (82)
95 1z2q_A LM5-1; membrane protein 53.7 6.9 0.00023 30.6 2.4 32 133-164 19-54 (84)
96 1mm2_A MI2-beta; PHD, zinc fin 53.4 4.7 0.00016 29.6 1.3 48 134-181 8-56 (61)
97 2xqn_T Testin, TESS; metal-bin 53.3 7.4 0.00025 32.0 2.6 47 134-185 29-76 (126)
98 1wil_A KIAA1045 protein; ring 53.3 12 0.0004 29.8 3.6 30 135-165 15-47 (89)
99 1we9_A PHD finger family prote 53.1 2.8 9.7E-05 30.8 -0.0 50 132-181 3-58 (64)
100 2yql_A PHD finger protein 21A; 52.4 1.8 6.2E-05 31.2 -1.1 47 132-180 6-55 (56)
101 3o36_A Transcription intermedi 52.3 3.9 0.00013 36.5 0.7 47 136-182 5-52 (184)
102 2pv0_B DNA (cytosine-5)-methyl 52.3 9.9 0.00034 38.3 3.8 49 133-181 91-148 (386)
103 3u5n_A E3 ubiquitin-protein li 52.1 2.7 9.2E-05 38.4 -0.3 47 134-182 6-55 (207)
104 1x4u_A Zinc finger, FYVE domai 52.0 7.2 0.00024 30.4 2.2 31 133-163 12-46 (84)
105 1wen_A Inhibitor of growth fam 51.5 11 0.00037 28.6 3.1 45 134-182 15-66 (71)
106 2fiy_A Protein FDHE homolog; F 51.3 1.6 5.4E-05 42.8 -2.1 46 133-181 180-231 (309)
107 1z60_A TFIIH basal transcripti 49.3 7.1 0.00024 28.9 1.7 39 137-178 17-58 (59)
108 3t7l_A Zinc finger FYVE domain 49.1 6.5 0.00022 31.2 1.5 30 135-164 20-53 (90)
109 2jtn_A LIM domain-binding prot 49.0 8.4 0.00029 34.0 2.4 47 134-185 86-132 (182)
110 2l5u_A Chromodomain-helicase-D 47.7 6.4 0.00022 28.9 1.2 45 134-180 10-57 (61)
111 3ql9_A Transcriptional regulat 46.9 18 0.0006 30.9 4.0 47 134-180 56-110 (129)
112 1fp0_A KAP-1 corepressor; PHD 46.0 10 0.00035 30.3 2.2 49 133-181 23-72 (88)
113 1f62_A Transcription factor WS 46.0 7.2 0.00025 27.2 1.2 44 137-180 2-49 (51)
114 3o70_A PHD finger protein 13; 44.2 3.6 0.00012 31.1 -0.7 47 133-180 17-66 (68)
115 2ct7_A Ring finger protein 31; 43.2 5.6 0.00019 31.2 0.3 33 136-168 26-64 (86)
116 2o35_A Hypothetical protein DU 42.4 9.8 0.00033 31.1 1.6 12 157-168 43-54 (105)
117 1dvp_A HRS, hepatocyte growth 42.4 8.6 0.0003 35.2 1.5 28 136-163 162-193 (220)
118 3fyb_A Protein of unknown func 42.1 9.6 0.00033 31.1 1.5 12 157-168 42-53 (104)
119 3mjh_B Early endosome antigen 41.7 5.3 0.00018 26.3 -0.1 14 135-148 5-18 (34)
120 2cup_A Skeletal muscle LIM-pro 41.3 8.7 0.0003 30.2 1.1 47 134-185 32-79 (101)
121 2jmo_A Parkin; IBR, E3 ligase, 40.7 2.6 9E-05 32.8 -2.0 14 152-165 55-68 (80)
122 2xjy_A Rhombotin-2; oncoprotei 40.4 18 0.0006 29.8 3.0 49 134-185 28-79 (131)
123 2dar_A PDZ and LIM domain prot 40.4 17 0.00057 28.1 2.7 39 136-185 26-64 (90)
124 3zyq_A Hepatocyte growth facto 39.7 9.5 0.00033 35.3 1.3 29 136-164 165-197 (226)
125 1x64_A Alpha-actinin-2 associa 39.4 33 0.0011 26.2 4.3 42 134-186 24-65 (89)
126 1vfy_A Phosphatidylinositol-3- 39.0 13 0.00043 28.2 1.7 27 137-163 13-43 (73)
127 1wem_A Death associated transc 38.8 8.4 0.00029 29.3 0.7 47 134-181 15-70 (76)
128 1rut_X Flinc4, fusion protein 38.8 9.2 0.00031 34.0 1.0 49 134-185 31-82 (188)
129 1wep_A PHF8; structural genomi 38.4 26 0.00088 26.8 3.4 48 134-182 11-64 (79)
130 1x62_A C-terminal LIM domain p 38.0 28 0.00097 26.0 3.6 39 135-184 15-53 (79)
131 3a1b_A DNA (cytosine-5)-methyl 37.8 19 0.00064 31.9 2.8 44 134-180 78-133 (159)
132 2l43_A N-teminal domain from h 37.1 7.8 0.00027 30.7 0.2 52 134-186 24-80 (88)
133 2gmg_A Hypothetical protein PF 35.9 19 0.00065 29.6 2.4 30 148-185 68-97 (105)
134 2ysm_A Myeloid/lymphoid or mix 35.8 13 0.00045 30.2 1.4 47 133-179 5-55 (111)
135 1wyh_A SLIM 2, skeletal muscle 35.7 26 0.0009 25.4 3.0 38 137-185 7-46 (72)
136 2ro1_A Transcription intermedi 35.3 11 0.00038 33.9 1.0 45 137-181 4-49 (189)
137 2d8x_A Protein pinch; LIM doma 34.4 30 0.001 25.1 3.1 39 136-185 6-44 (70)
138 3vth_A Hydrogenase maturation 33.8 11 0.00038 41.2 0.9 51 133-183 109-194 (761)
139 3lqh_A Histone-lysine N-methyl 33.7 13 0.00043 33.6 1.1 45 137-181 4-63 (183)
140 2d8z_A Four and A half LIM dom 33.2 32 0.0011 24.8 3.1 37 137-184 7-43 (70)
141 1xwh_A Autoimmune regulator; P 32.8 6.3 0.00022 29.3 -0.9 46 134-180 7-54 (66)
142 2puy_A PHD finger protein 21A; 32.3 7.3 0.00025 28.3 -0.6 45 135-181 5-52 (60)
143 1nyp_A Pinch protein; LIM doma 31.9 25 0.00086 25.2 2.3 39 136-185 6-44 (66)
144 1v6g_A Actin binding LIM prote 31.1 28 0.00094 26.1 2.5 40 137-187 17-56 (81)
145 2jne_A Hypothetical protein YF 30.9 2.4 8.2E-05 34.6 -3.7 40 136-183 33-72 (101)
146 2l3k_A Rhombotin-2, linker, LI 30.3 49 0.0017 27.0 4.2 45 134-183 35-81 (123)
147 1zbd_B Rabphilin-3A; G protein 30.2 14 0.00049 31.6 0.8 48 134-181 54-107 (134)
148 1wig_A KIAA1808 protein; LIM d 30.2 35 0.0012 25.2 2.9 36 137-183 7-42 (73)
149 1x4l_A Skeletal muscle LIM-pro 30.1 37 0.0013 24.7 3.0 39 136-185 6-48 (72)
150 4g9i_A Hydrogenase maturation 29.9 15 0.00052 40.2 1.1 51 133-183 104-189 (772)
151 1iml_A CRIP, cysteine rich int 29.8 29 0.001 25.6 2.4 44 134-182 26-71 (76)
152 2cor_A Pinch protein; LIM doma 29.2 50 0.0017 24.7 3.7 39 136-185 16-54 (79)
153 2cu8_A Cysteine-rich protein 2 29.1 29 0.001 25.6 2.3 39 136-185 10-49 (76)
154 2cur_A Skeletal muscle LIM-pro 28.3 33 0.0011 24.7 2.4 36 137-183 7-42 (69)
155 2zet_C Melanophilin; complex, 28.2 21 0.00073 31.2 1.5 45 135-181 68-117 (153)
156 1x63_A Skeletal muscle LIM-pro 28.1 42 0.0014 25.0 3.1 39 136-185 16-56 (82)
157 1x68_A FHL5 protein; four-and- 27.9 35 0.0012 25.2 2.6 39 136-185 6-48 (76)
158 1x61_A Thyroid receptor intera 27.8 56 0.0019 23.6 3.7 34 135-168 33-67 (72)
159 1wev_A Riken cDNA 1110020M19; 27.4 8 0.00027 30.6 -1.3 48 135-182 16-73 (88)
160 1x4k_A Skeletal muscle LIM-pro 27.3 38 0.0013 24.5 2.6 38 137-185 7-46 (72)
161 2cuq_A Four and A half LIM dom 27.0 44 0.0015 24.8 3.0 38 137-185 17-54 (80)
162 2ku3_A Bromodomain-containing 25.8 17 0.00057 27.6 0.4 46 134-180 15-65 (71)
163 1x6a_A LIMK-2, LIM domain kina 25.1 43 0.0015 25.0 2.6 37 137-184 17-53 (81)
164 2vnf_A ING 4, P29ING4, inhibit 24.4 9.9 0.00034 27.8 -1.1 43 134-180 9-58 (60)
165 2vpb_A Hpygo1, pygopus homolog 24.2 28 0.00095 25.9 1.3 32 132-163 5-41 (65)
166 2e6r_A Jumonji/ARID domain-con 24.1 7.9 0.00027 30.9 -1.9 48 134-181 15-66 (92)
167 3ttc_A HYPF, transcriptional r 23.6 24 0.0008 38.0 1.1 49 134-182 16-99 (657)
168 1x3h_A Leupaxin; paxillin fami 23.6 43 0.0015 24.8 2.4 38 137-185 17-54 (80)
169 2ri7_A Nucleosome-remodeling f 23.5 12 0.00042 32.7 -0.9 48 133-181 6-59 (174)
170 2dlo_A Thyroid receptor-intera 23.4 39 0.0014 25.2 2.1 38 136-184 16-53 (81)
171 3ukx_C Bimax2 peptide; arm rep 23.3 52 0.0018 20.0 2.1 25 396-422 4-28 (28)
172 3c6w_A P28ING5, inhibitor of g 23.3 11 0.00038 27.5 -1.1 43 134-180 8-57 (59)
173 1g47_A Pinch protein; LIM doma 22.2 63 0.0022 23.6 3.1 40 136-186 12-53 (77)
174 3ask_A E3 ubiquitin-protein li 21.1 17 0.00058 33.9 -0.5 44 137-180 176-224 (226)
No 1
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.48 E-value=6.3e-15 Score=116.21 Aligned_cols=66 Identities=26% Similarity=0.534 Sum_probs=56.3
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP 200 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~ 200 (422)
.+.+.|+||++.|.+|++++|||+||..||..|+.. +...||+|+.++...++.+++.+.+.+..+
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~--~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~ 71 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDA--GHKTCPKSQETLLHAGLTPNYVLKSLIALW 71 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTT--TCCBCTTTCCBCSSCCCEECTTTHHHHHHH
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHH--CcCCCCCCcCCCChhhCccCHHHHHHHHHH
Confidence 467899999999999999999999999999999975 367899999999988888877665544443
No 2
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=99.45 E-value=1.3e-14 Score=117.33 Aligned_cols=66 Identities=17% Similarity=0.124 Sum_probs=57.2
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP 200 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~ 200 (422)
..+++.|+||++.|.+||+++|||+||..||..|+.. ...||+|+.++...+++++..+.+.+..|
T Consensus 11 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~l~pn~~L~~~i~~~ 76 (85)
T 2kr4_A 11 APDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN---SPTDPFNRQMLTESMLEPVPELKEQIQAW 76 (85)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CchheECcccCchhcCCeECCCCCEECHHHHHHHHhc---CCCCCCCcCCCChHhcchHHHHHHHHHHH
Confidence 3467999999999999999999999999999999997 57899999999988888887665544433
No 3
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.44 E-value=2e-13 Score=108.30 Aligned_cols=65 Identities=29% Similarity=0.639 Sum_probs=56.5
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhc---CCCCCCCCCCcccccCCceecccCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH---SDAKECPVCKGEVTVKNITPIYGRGNST 197 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~---~~~~~CPvCr~~l~~~~l~~~~~~~~~~ 197 (422)
.+.+.|+||++.+.+|++++|||+||..||..|+... .....||+|+..+...++.+++.+.+++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVANIV 84 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCSSC
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHHhh
Confidence 3568999999999999999999999999999999872 2367899999999999999988776653
No 4
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=99.44 E-value=1.5e-14 Score=120.68 Aligned_cols=67 Identities=16% Similarity=0.126 Sum_probs=59.0
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPE 201 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~ 201 (422)
..+.+.||||+++|.+||+++|||+||..||..|+.. ...||+|+.++...+++++..+.+.+..|.
T Consensus 26 ~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 26 APDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN---SPTDPFNRQTLTESMLEPVPELKEQIQAWM 92 (100)
T ss_dssp CSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS---CSBCSSSCCBCCTTSSEECHHHHHHHHHHH
T ss_pred CcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc---CCCCCCCCCCCChhhceECHHHHHHHHHHH
Confidence 3468999999999999999999999999999999986 578999999999999999887766655553
No 5
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.42 E-value=5.3e-14 Score=108.53 Aligned_cols=57 Identities=39% Similarity=0.802 Sum_probs=51.4
Q ss_pred CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
.+.+.|+||++.+.++ +.++|||.||..||..|+.. ...||+||..+...++.++|.
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~l 71 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI 71 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCCBCCCCSCCCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc---CCCCCCCCCccChhheeeccC
Confidence 4567999999999887 88999999999999999998 579999999999999888773
No 6
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.42 E-value=3.8e-14 Score=115.17 Aligned_cols=65 Identities=26% Similarity=0.455 Sum_probs=52.6
Q ss_pred CCCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCccc-ccCCceecccCCCCC
Q 014562 132 DGSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEV-TVKNITPIYGRGNST 197 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l-~~~~l~~~~~~~~~~ 197 (422)
..+.+.|+||++.|.+|++++ |||+||..||..|+.. .+...||+|+..+ ....+.+++.+.+++
T Consensus 10 ~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i 76 (92)
T 3ztg_A 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLE-SDEHTCPTCHQNDVSPDALIANKFLRQAV 76 (92)
T ss_dssp CCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHH-CTTCCCTTTCCSSCCTTSCEECHHHHHHH
T ss_pred CCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHh-cCCCcCcCCCCcCCCccccCcCHHHHHHH
Confidence 346789999999999999999 9999999999999986 2356899999997 455666666554433
No 7
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=2.4e-13 Score=107.87 Aligned_cols=65 Identities=32% Similarity=0.618 Sum_probs=56.1
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHh---cCCCCCCCCCCcccccCCceecccCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV---HSDAKECPVCKGEVTVKNITPIYGRGNST 197 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~---~~~~~~CPvCr~~l~~~~l~~~~~~~~~~ 197 (422)
.+.+.|+||++.+.+|+.++|||+||..||..|+.. ......||+|+..+...++.+++.+.+++
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~~v 84 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVANIV 84 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCCCC
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHHhh
Confidence 356899999999999999999999999999999976 23367899999999998888888776653
No 8
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.42 E-value=4.5e-14 Score=111.18 Aligned_cols=65 Identities=25% Similarity=0.524 Sum_probs=55.8
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhc----CCCCCCCCCCcccccCCceecccCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVH----SDAKECPVCKGEVTVKNITPIYGRGNST 197 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~----~~~~~CPvCr~~l~~~~l~~~~~~~~~~ 197 (422)
.+.+.|+||++.|.+|+.++|||+||..||..|+... .....||+||..+...++.+++.+.+++
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~lv 78 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLANIV 78 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCCCC
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHHhh
Confidence 4568999999999999999999999999999999762 2256899999999988888888776653
No 9
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.41 E-value=2.5e-13 Score=105.68 Aligned_cols=56 Identities=25% Similarity=0.501 Sum_probs=49.4
Q ss_pred CCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 133 GSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
.+.+.|+||++.+.+|+.+ +|||.||..||..|+.. ...||+||..+...++..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~ 69 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY---SNRCPKCNIVVHQTQPLSGP 69 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH---CSSCTTTCCCCCSSCSCCCC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc---CCcCCCcCcccCcccccccC
Confidence 4568999999999999986 99999999999999987 67999999999887766543
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=99.41 E-value=3.2e-14 Score=118.20 Aligned_cols=68 Identities=19% Similarity=0.090 Sum_probs=59.8
Q ss_pred CCCccccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCccc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEE 202 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e 202 (422)
..+++.||||+++|.+||+++|| |+||..||..|+.. ...||+|+.++...++++++.+.+.+..|..
T Consensus 19 ~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~---~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~ 87 (98)
T 1wgm_A 19 ACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS---DQTDPFNRSPLTMDQIRPNTELKEKIQRWLA 87 (98)
T ss_dssp CCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT---SCBCTTTCSBCCTTTSEECHHHHHHHHHHHH
T ss_pred CcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh---CCCCCCCCCCCChhhceEcHHHHHHHHHHHH
Confidence 34679999999999999999999 99999999999987 5689999999999999998887766665543
No 11
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=104.23 Aligned_cols=56 Identities=39% Similarity=0.841 Sum_probs=50.7
Q ss_pred CccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 134 SFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
+.+.|+||++.+.++ +.++|||.||..||..|+.. ...||+||.++...++.++|.
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~l 64 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI 64 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH---CSBCTTTCCBCTTTCEEECCC
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc---CCCCCCCCccCCccceeeeeC
Confidence 457999999999887 78999999999999999998 679999999999999998873
No 12
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.38 E-value=2.8e-13 Score=105.08 Aligned_cols=56 Identities=34% Similarity=0.685 Sum_probs=48.1
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
..+.+.|+||++.+.+|+.++|||.||..||..|+........||+||.++...++
T Consensus 17 ~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~ 72 (73)
T 2ysl_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI 72 (73)
T ss_dssp CCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred CccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence 34568999999999999999999999999999999743346789999999877654
No 13
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=4.1e-13 Score=102.61 Aligned_cols=54 Identities=24% Similarity=0.612 Sum_probs=47.2
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
..+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+|+.++...++
T Consensus 12 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~i 65 (66)
T 2ecy_A 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSS--SSPKCTACQESIVKDKV 65 (66)
T ss_dssp CCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTT--SSCCCTTTCCCCCTTTC
T ss_pred CCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHh--CcCCCCCCCcCCChhhc
Confidence 3467899999999999999999999999999999963 35689999999887665
No 14
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.36 E-value=2.8e-13 Score=112.43 Aligned_cols=58 Identities=28% Similarity=0.803 Sum_probs=50.2
Q ss_pred CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
+.+.|+||++.|.+|+. ++|||.||..||..|+... ...||+||.++...++.+++.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~l~~~~~~ 79 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQ--RAQCPHCRAPLQLRELVNCRWA 79 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHT--CSBCTTTCCBCCGGGCEECTTH
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHC--cCCCCCCCCcCCHHHhHhhHHH
Confidence 45799999999999999 9999999999999999982 2689999999988777765543
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.35 E-value=7.9e-13 Score=103.58 Aligned_cols=51 Identities=31% Similarity=0.641 Sum_probs=44.4
Q ss_pred CCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.+.|+||++.|.+|++++ |||+||..||..|+... +...||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~-~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLES-DEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHS-SSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhc-CCCcCCCCCCcCCC
Confidence 46789999999999999999 99999999999999872 24689999997543
No 16
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.34 E-value=9.5e-13 Score=104.58 Aligned_cols=48 Identities=31% Similarity=0.706 Sum_probs=44.4
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.+.+.|+||++.+.+|++++|||+||..||..|+.. ...||+|+..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA---TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH---CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC---CCcCCCcCcccc
Confidence 456899999999999999999999999999999987 678999999886
No 17
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.9e-13 Score=111.31 Aligned_cols=70 Identities=19% Similarity=0.372 Sum_probs=58.8
Q ss_pred CCccccccccCCCCCcEEcc-CCCccChhhHHHHHHhc---CCCCCCCC--CCcc-cccCCceecccCCCCCCCccc
Q 014562 133 GSFFDCNICLDLSRDPVVTC-CGHLFCWPCLYRWLHVH---SDAKECPV--CKGE-VTVKNITPIYGRGNSTREPEE 202 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~-CGH~FC~~CI~~wl~~~---~~~~~CPv--Cr~~-l~~~~l~~~~~~~~~~~~~~e 202 (422)
.+.+.||||+++|.+||+++ |||+||..||..|+..+ .....||+ |+.. +...++++++.+...+..+..
T Consensus 5 ~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~ 81 (94)
T 2yu4_A 5 SSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNK 81 (94)
T ss_dssp SSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHT
T ss_pred CcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHH
Confidence 45689999999999999996 99999999999999873 23568999 9887 888999999887776665543
No 18
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.6e-12 Score=104.19 Aligned_cols=55 Identities=25% Similarity=0.739 Sum_probs=47.6
Q ss_pred CCccccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 133 GSFFDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.+.+.|+||++.|.+ |+.++|||.||..||..|+........||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~i 71 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITSL 71 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSST
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchhH
Confidence 456899999999998 9999999999999999999984335789999999876544
No 19
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=6.4e-13 Score=111.36 Aligned_cols=58 Identities=33% Similarity=0.885 Sum_probs=49.4
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
.+.|+||++.+.+|+.++|||+||..||..|+....+...||+|+..+...++.+++.
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~ 78 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTR 78 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCS
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHH
Confidence 4699999999999999999999999999999987444468999999988776655443
No 20
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.31 E-value=8.6e-13 Score=100.50 Aligned_cols=56 Identities=27% Similarity=0.528 Sum_probs=48.3
Q ss_pred ccccccccC-CCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 135 FFDCNICLD-LSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 135 ~~~C~ICl~-~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
++.|+||++ .+.+| ++++|||+||..||..|+.. +...||+|++++...++.+++.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~ 63 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVR--GAGNCPECGTPLRKSNFRVQLF 63 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHT--TSSSCTTTCCCCSSCCCEEECC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHc--CCCcCCCCCCccccccceeecc
Confidence 568999999 88888 57899999999999999875 3568999999999988887653
No 21
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.31 E-value=2.1e-12 Score=97.62 Aligned_cols=47 Identities=34% Similarity=0.757 Sum_probs=41.5
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
..+.+.|+||++.+.+|++++|||+||..||..|+...+....||+|
T Consensus 17 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 17 LQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred CccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 34668999999999999999999999999999999864446789998
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.31 E-value=5.2e-13 Score=116.99 Aligned_cols=47 Identities=30% Similarity=0.851 Sum_probs=43.1
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.|+||++.|.+|++++|||+||..||..|+.. ...||+||.++..
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR---KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT---CSBCTTTCCBCCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHc---CCcCCCCCCcCCC
Confidence 4689999999999999999999999999999987 6789999998753
No 23
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.31 E-value=7.5e-13 Score=113.60 Aligned_cols=58 Identities=26% Similarity=0.548 Sum_probs=48.3
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc-CCceecccC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV-KNITPIYGR 193 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~-~~l~~~~~~ 193 (422)
+.+.|+||++.|.+|++++|||+||..||..|+.. ....||+||.++.. ..+.+++.+
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~n~~l 109 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRA--QVFSCPACRYDLGRSYAMQVNQPL 109 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCCCHHH
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhH--CcCCCCCCCccCCCCCCCCCCHHH
Confidence 45799999999999999999999999999999985 35589999999876 445554443
No 24
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.30 E-value=4.9e-13 Score=103.74 Aligned_cols=52 Identities=29% Similarity=0.708 Sum_probs=46.2
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.+.+.|+||++.+.+++.++|||.||..||..|+.. ...||+||..+...++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~~ 64 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL---GKRCALCRQEIPEDFL 64 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC---SSBCSSSCCBCCHHHH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC---CCcCcCcCchhCHhhc
Confidence 356799999999999999999999999999999987 5789999999876544
No 25
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.30 E-value=3.3e-13 Score=129.49 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=57.8
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCcc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPE 201 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~ 201 (422)
..+.+.|+||++.|.+||+++|||+||..||..|+... ...||+|+.++...+++|+..+.+.+..+.
T Consensus 205 ~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~--~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~ 272 (281)
T 2c2l_A 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRV--GHFNPVTRSPLTQEQLIPNLAMKEVIDAFI 272 (281)
T ss_dssp CCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHT--CSSCTTTCCCCCGGGCEECHHHHHHHHHHH
T ss_pred CCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHC--CCCCcCCCCCCchhcCcccHHHHHHHHHHH
Confidence 34679999999999999999999999999999999872 234999999999989999887766555543
No 26
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.29 E-value=8.8e-13 Score=108.72 Aligned_cols=59 Identities=22% Similarity=0.580 Sum_probs=50.6
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCC
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGN 195 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~ 195 (422)
+.+.|+||++.|.+|+.+ +|||+||..||..|+.. ...||+|+..+...++.+++.+.+
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~n~~l~~ 80 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY---KTQCPTCCVTVTEPDLKNNRILDE 80 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHHHH
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC---CCCCCCCCCcCChhhCCcCHHHHH
Confidence 357999999999999987 99999999999999987 579999999998777776655443
No 27
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.7e-12 Score=99.12 Aligned_cols=49 Identities=37% Similarity=0.815 Sum_probs=43.7
Q ss_pred CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.+.|+||++.+.++ +.++|||.||..||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINH 68 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc---CCCCCCCCCccCc
Confidence 4567999999999887 88999999999999999998 6799999998753
No 28
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.27 E-value=2.9e-12 Score=100.86 Aligned_cols=55 Identities=31% Similarity=0.640 Sum_probs=46.5
Q ss_pred CCccccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceec
Q 014562 133 GSFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPI 190 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~ 190 (422)
.+...|+||++.|..+ +.++|||.||..||..|+.. ...||+||+.+...++.++
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~ 70 (78)
T 2ect_A 13 GSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ---HDSCPVCRKSLTGQNTATN 70 (78)
T ss_dssp SSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT---TCSCTTTCCCCCCSCSCCC
T ss_pred CCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc---CCcCcCcCCccCCcccCCC
Confidence 3567999999999866 45799999999999999987 5789999999987766553
No 29
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.25 E-value=2.8e-12 Score=107.38 Aligned_cols=49 Identities=31% Similarity=0.701 Sum_probs=44.4
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+.+.|+||++.+.+|+.+ +|||+||..||..|+.. ...||+|+..+...
T Consensus 14 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~---~~~CP~Cr~~~~~~ 63 (108)
T 2ckl_A 14 PHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET---SKYCPICDVQVHKT 63 (108)
T ss_dssp GGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS---CSBCTTTCCBSCSS
T ss_pred CcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh---CCcCcCCCcccccc
Confidence 457999999999999987 99999999999999987 57999999988754
No 30
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=99.24 E-value=2.7e-12 Score=114.37 Aligned_cols=59 Identities=29% Similarity=0.540 Sum_probs=49.2
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC-CceecccCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK-NITPIYGRG 194 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~-~l~~~~~~~ 194 (422)
+.+.|+||++.|.+|++++|||+||..||..|+.. ....||+||..+... .+.+++.+.
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~n~~l~ 136 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKA--QVFSCPACRHDLGQNYIMIPNEILQ 136 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHT--TCCBCTTTCCBCCTTCCCCBCHHHH
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHh--CCCcCCCCCccCCCCCCCCCCHHHH
Confidence 35799999999999999999999999999999986 345899999998876 455554433
No 31
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=99.22 E-value=1.6e-12 Score=119.16 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=57.4
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREP 200 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~ 200 (422)
..+.+.||||+++|.+||+++|||+||..||..|+...+ ..||+|+.++...++.||+.+.+.+..|
T Consensus 103 ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~--~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~ 169 (179)
T 2f42_A 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVG--HFDPVTRSPLTQDQLIPNLAMKEVIDAF 169 (179)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTC--SBCTTTCCBCCGGGCEECHHHHHHHHHH
T ss_pred CcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCC--CCCCCCcCCCChhhCcchHHHHHHHHHH
Confidence 357899999999999999999999999999999998722 2699999999999999988766554444
No 32
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.22 E-value=7.1e-12 Score=91.80 Aligned_cols=47 Identities=32% Similarity=0.680 Sum_probs=41.4
Q ss_pred CccccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+...|+||++.+.+ ++.++|||.||..||..|+.. ...||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE---GYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH---TCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc---CCcCCCCCCcCC
Confidence 45699999999966 678999999999999999998 578999998764
No 33
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.22 E-value=4.2e-12 Score=108.68 Aligned_cols=58 Identities=38% Similarity=0.782 Sum_probs=52.4
Q ss_pred CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
.+.+.|+||++.|.+| +.++|||+||..||.+|++. ...||+|++.+...++.+++..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~l~~l~i~ 69 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYIG 69 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT---CSBCTTTCCBCTTTCEEECBCS
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh---CCCCCCCCCcCccccccccccC
Confidence 3568999999999988 89999999999999999987 6699999999999998887754
No 34
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.22 E-value=2.7e-12 Score=98.97 Aligned_cols=50 Identities=32% Similarity=0.823 Sum_probs=44.6
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
.+.+.|+||++.+.+ +.++|||.||..||..|+.. ...||+||.++...+
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~ 62 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR---HRNCPICRLQMTGAN 62 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC---CSSCHHHHHCTTCCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC---cCcCCCcCCcccCCC
Confidence 456799999999999 99999999999999999986 779999999887554
No 35
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=8.4e-12 Score=92.29 Aligned_cols=46 Identities=37% Similarity=0.957 Sum_probs=40.1
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
.+.+.|+||++.+.+|++++|||+||..||..|+........||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 3567999999999999999999999999999997643346789998
No 36
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.21 E-value=1.7e-11 Score=93.73 Aligned_cols=47 Identities=34% Similarity=0.836 Sum_probs=42.2
Q ss_pred CccccccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
....|+||++.+.++ +.++|||.||..|+..|+.. ...||+||.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~ 51 (68)
T 1chc_A 4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ---NPTCPLCKVPVE 51 (68)
T ss_dssp CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH---SCSTTTTCCCCC
T ss_pred CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC---cCcCcCCChhhH
Confidence 346899999999997 68899999999999999988 579999999875
No 37
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.20 E-value=1.4e-11 Score=94.61 Aligned_cols=49 Identities=31% Similarity=0.749 Sum_probs=41.8
Q ss_pred CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.....|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~---~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT---NKKCPICRVDIEA 63 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH---CSBCTTTCSBSCS
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc---CCCCcCcCccccC
Confidence 355799999998853 467899999999999999998 5689999998764
No 38
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=99.20 E-value=6.8e-12 Score=106.86 Aligned_cols=60 Identities=30% Similarity=0.561 Sum_probs=51.5
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
..+.+.|+||++.+.+|+.++|||+||..||..|+... ...||+||.++...++.++..+
T Consensus 15 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~--~~~CP~Cr~~~~~~~~~~~~~l 74 (118)
T 3hct_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDA--GHKCPVDNEILLENQLFPDNFA 74 (118)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHH--CSBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhC--CCCCCCCCCCcCHHhcccCHHH
Confidence 44678999999999999999999999999999999872 2389999999988777765543
No 39
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.18 E-value=1.3e-11 Score=90.52 Aligned_cols=47 Identities=32% Similarity=0.716 Sum_probs=41.0
Q ss_pred CccccccccCCCCC---cEEcc-CCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRD---PVVTC-CGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~---pv~l~-CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+...|+||++.+.+ ++.++ |||.||..||..|++. ...||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~---~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS---HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT---CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc---CCcCcCCCCEeE
Confidence 45699999999987 67776 9999999999999987 678999998764
No 40
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.18 E-value=1e-11 Score=97.08 Aligned_cols=48 Identities=25% Similarity=0.638 Sum_probs=42.5
Q ss_pred CccccccccCCCCCc---EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDP---VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p---v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+...|+||++.|..+ +.++|||.||..||..|++. ...||+||+.+..
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~---~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA---NRTCPICRADSGP 72 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH---CSSCTTTCCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc---CCcCcCcCCcCCC
Confidence 456999999999887 67899999999999999998 5689999998764
No 41
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.17 E-value=1e-11 Score=101.21 Aligned_cols=49 Identities=31% Similarity=0.665 Sum_probs=42.7
Q ss_pred CCccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
++...|+||++.|.. ++.++|||.||..||..|+.. ...||+||..+..
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~---~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK---SGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT---TCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc---CCcCcCcCccCCC
Confidence 456799999999987 667899999999999999987 6699999998753
No 42
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.17 E-value=5e-12 Score=107.54 Aligned_cols=55 Identities=25% Similarity=0.684 Sum_probs=47.1
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
+.+.|+||++.|.+|+++ +|||+||..||..|+. ..||+|+..+...++.+++.+
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~-----~~CP~Cr~~~~~~~~~~n~~l 76 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG-----TGCPVCYTPAWIQDLKINRQL 76 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT-----TBCSSSCCBCSCSSCCCCHHH
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc-----CCCcCCCCcCccccccccHHH
Confidence 357999999999999998 9999999999999987 389999999876666655543
No 43
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.15 E-value=4.8e-12 Score=107.04 Aligned_cols=49 Identities=31% Similarity=0.779 Sum_probs=43.9
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+.+.|+||++.+.+|+.++|||+||..||..|+.. +...||+||..+..
T Consensus 14 ~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEK--ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCT--TTSBCTTTCCBCHH
T ss_pred CCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhH--CcCCCCCCCcccCc
Confidence 56899999999999999999999999999999965 35689999998864
No 44
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=99.15 E-value=1.4e-11 Score=110.64 Aligned_cols=57 Identities=33% Similarity=0.734 Sum_probs=46.9
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc-CCceeccc
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV-KNITPIYG 192 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~-~~l~~~~~ 192 (422)
+.+.|+||++.|.+|+.+ +|||+||..||..|+.. +...||+|+.++.. ..+.+++.
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~l~~~~~ 111 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRS--GNKECPTCRKKLVSKRSLRPDPN 111 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHT--TCCBCTTTCCBCCSGGGEEECHH
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHh--CcCCCCCCCCcCCCcccCCcCHH
Confidence 567999999999999987 99999999999999985 35689999999853 33444443
No 45
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=99.15 E-value=1.5e-11 Score=104.18 Aligned_cols=54 Identities=35% Similarity=0.774 Sum_probs=47.2
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCcee
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~ 189 (422)
+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+|+.++...++.+
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~ 75 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKV--MGSYCPSCRYPCFPTDLES 75 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--TCSBCTTTCCBCCGGGCBC
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhH--CcCcCCCCCCCCCHhhccc
Confidence 35799999999999999999999999999999986 2458999999988766543
No 46
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=3.6e-11 Score=93.55 Aligned_cols=48 Identities=33% Similarity=0.708 Sum_probs=41.3
Q ss_pred CccccccccCCCCCcE---EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPV---VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv---~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
....|+||++.|..+. .++|||.||..||..|++. ...||+||+++..
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~---~~~CP~Cr~~~~~ 64 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV---RKVCPLCNMPVLQ 64 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH---CSBCTTTCCBCSS
T ss_pred CCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc---CCcCCCcCccccc
Confidence 4569999999998764 4599999999999999998 5689999998754
No 47
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.11 E-value=1.9e-11 Score=104.63 Aligned_cols=57 Identities=39% Similarity=0.802 Sum_probs=51.7
Q ss_pred CCccccccccCCCCCc-------EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 133 GSFFDCNICLDLSRDP-------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p-------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
++...|+||++.+.++ +.++|||.||..||.+|++. ...||+||..+...+++++|.
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~---~~~CP~Cr~~~~~~~~~~~~~ 133 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN---ANTCPTCRKKINHKRYHPIYI 133 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH---CSBCTTTCCBCCGGGEEEECC
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc---CCCCCCCCCcCChhcceeeeC
Confidence 4567999999999876 88999999999999999998 679999999999999999874
No 48
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.08 E-value=1.3e-10 Score=92.48 Aligned_cols=54 Identities=20% Similarity=0.458 Sum_probs=43.3
Q ss_pred CCCccccccccCCCC--CcEEcc--CCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 132 DGSFFDCNICLDLSR--DPVVTC--CGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~--~pv~l~--CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.++++.|+||++.+. +++.++ |||.||..|+..++.. ....||+||+++....+
T Consensus 8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~--~~~~CP~CR~~~~~~~~ 65 (78)
T 1e4u_A 8 KEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTD--ENGLCPACRKPYPEDPA 65 (78)
T ss_dssp CCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTS--SCSBCTTTCCBCSSCSS
T ss_pred cccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhc--CCCCCCCCCCccCCCch
Confidence 346789999999884 345555 9999999999998854 35789999999887654
No 49
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.07 E-value=3.3e-11 Score=89.50 Aligned_cols=46 Identities=26% Similarity=0.647 Sum_probs=40.3
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.+.|+||++.|.+|++++|||+||..||..| ...||+||+.+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~------~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS------GMQCPICQAPWPL 49 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS------SSSCSSCCSSSSC
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC------CCCCCcCCcEeec
Confidence 456899999999999999999999999999763 4579999998764
No 50
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.07 E-value=5.7e-11 Score=100.03 Aligned_cols=50 Identities=28% Similarity=0.496 Sum_probs=40.7
Q ss_pred ccccccccCCCCCcE------------------EccCCCccChhhHHHHHHhc--CCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPV------------------VTCCGHLFCWPCLYRWLHVH--SDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv------------------~l~CGH~FC~~CI~~wl~~~--~~~~~CPvCr~~l~~ 184 (422)
...|+||++.|.++. +++|||.||..||..|+... .....||+||..+..
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~ 94 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGE 94 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCC
Confidence 359999999997654 78999999999999999641 125689999998754
No 51
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=99.06 E-value=2.3e-11 Score=107.29 Aligned_cols=51 Identities=27% Similarity=0.608 Sum_probs=44.5
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.++.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+||.++..
T Consensus 28 l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~--~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 28 LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSS--GPQNCAACVHEGIY 78 (141)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGG--SCEECHHHHHTTCC
T ss_pred CCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhc--CCCCCCCCCCcccc
Confidence 3467899999999999999999999999999999986 24589999997643
No 52
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=99.05 E-value=5.7e-11 Score=114.40 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=55.8
Q ss_pred CCCCCccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCC--CCcccccCCceecccCCCC
Q 014562 130 GNDGSFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPV--CKGEVTVKNITPIYGRGNS 196 (422)
Q Consensus 130 ~~~~~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPv--Cr~~l~~~~l~~~~~~~~~ 196 (422)
......+.||||++.|.+||+. .|||+||..||..|+.. .+...||+ |++.+...++.++..+.+.
T Consensus 176 ~~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~-~~~~~CPvtGCr~~l~~~dL~pN~~L~~l 244 (267)
T 3htk_C 176 EGGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQG-YTTRDCPQAACSQVVSMRDFVRDPIMELR 244 (267)
T ss_dssp CSSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTT-CSCEECSGGGCSCEECGGGEEECHHHHHH
T ss_pred cCCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHh-CCCCCCCcccccCcCchhhCCcCHHHHHH
Confidence 3445779999999999999974 99999999999999986 33578999 9999999998887765543
No 53
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=99.02 E-value=1.3e-10 Score=104.76 Aligned_cols=60 Identities=30% Similarity=0.563 Sum_probs=51.5
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGR 193 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~ 193 (422)
..+.+.|+||++.+.+|+.++|||+||..||..|+.. ....||+|+..+...+++++...
T Consensus 15 ~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~--~~~~CP~Cr~~~~~~~~~~~~~~ 74 (170)
T 3hcs_A 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRD--AGHKCPVDNEILLENQLFPDNFA 74 (170)
T ss_dssp CCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH--HCSBCTTTCCBCCGGGCEECHHH
T ss_pred CCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHh--CCCCCCCCccCcchhhhhhhHHH
Confidence 4567899999999999999999999999999999986 13489999999988877765443
No 54
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1e-10 Score=93.26 Aligned_cols=49 Identities=31% Similarity=0.642 Sum_probs=40.3
Q ss_pred ccccccccCCCCC--------------cEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 135 FFDCNICLDLSRD--------------PVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 135 ~~~C~ICl~~~~~--------------pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
...|+||++.|.+ ++.+ +|||.||..||.+|+.. ..+||+||+++...+
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~CR~~~~~~~ 78 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ---NNRCPLCQQDWVVQR 78 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT---CCBCTTTCCBCCEEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh---CCCCCCcCCCcchhh
Confidence 4579999999976 3444 69999999999999998 569999999876543
No 55
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=99.01 E-value=1.2e-10 Score=88.39 Aligned_cols=55 Identities=18% Similarity=0.332 Sum_probs=49.9
Q ss_pred ccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCceeccc
Q 014562 135 FFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYG 192 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~ 192 (422)
.+.|+||++.+.+|+++ +|||+||..||.+|+.. ...||+++.++...+++++..
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~---~~~cP~t~~~L~~~~Lip~~~ 58 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD---TGNDPITNEPLSIEEIVEIVP 58 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH---HSBCTTTCCBCCGGGCEECCC
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh---CCCCcCCcCCCChhhcEECcc
Confidence 47899999999999999 99999999999999987 346999999999999998764
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.93 E-value=4.3e-10 Score=114.17 Aligned_cols=51 Identities=33% Similarity=0.860 Sum_probs=45.0
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
...|+||++.+.+|+.++|||.||..|+..|+.. ....||+||.++....+
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~--~~~~CP~CR~~i~~~~~ 382 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQES--EGQGCPFCRCEIKGTEP 382 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHH--TCSBCTTTCCBCCEEEE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhc--CCCCCCCCCCccCCcee
Confidence 4699999999999999999999999999999984 26689999999876543
No 57
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.91 E-value=2.5e-10 Score=89.48 Aligned_cols=43 Identities=35% Similarity=0.702 Sum_probs=38.9
Q ss_pred ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+.|+||++.+.+++.++|||. ||..|+..| ..||+||.++..
T Consensus 24 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 67 (74)
T 4ic3_A 24 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-------DKCPMCYTVITF 67 (74)
T ss_dssp HTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-------SBCTTTCCBCSE
T ss_pred CCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-------ccCCCcCcCccC
Confidence 4699999999999999999999 999999987 379999998753
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.91 E-value=5.3e-10 Score=85.35 Aligned_cols=53 Identities=28% Similarity=0.665 Sum_probs=44.6
Q ss_pred CccccccccCCCCCcEEc--cCCCc-cChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 134 SFFDCNICLDLSRDPVVT--CCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l--~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
+...|.||++.+.+++.+ ||||. ||..|+..|+.. ...||+||.++. .+..+|
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~--~~i~i~ 62 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR---NKPCPVCRQPIQ--MIVLTY 62 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT---TCCCTTTCCCCC--EEEEEE
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc---CCcCCCcCcchh--ceEeee
Confidence 345899999999999977 99999 899999999986 568999999884 344444
No 59
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=98.90 E-value=6.9e-10 Score=93.39 Aligned_cols=47 Identities=30% Similarity=0.682 Sum_probs=40.3
Q ss_pred ccccccccCCCCCc------------------EEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDP------------------VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~p------------------v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
...|+||++.|.++ +.++|||.||..||..|+.. +..||+||+++..
T Consensus 37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~---~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF 101 (106)
T ss_dssp SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT---CSBCSSSCSBCCE
T ss_pred CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc---CCcCcCCCCccee
Confidence 34899999999865 35799999999999999987 6799999998653
No 60
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.81 E-value=1.7e-09 Score=82.32 Aligned_cols=52 Identities=29% Similarity=0.740 Sum_probs=43.7
Q ss_pred ccccccccCCCCCcEEc--cCCCc-cChhhHHHHHHhcCCCCCCCCCCcccccCCceecc
Q 014562 135 FFDCNICLDLSRDPVVT--CCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIY 191 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l--~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~ 191 (422)
...|+||++.+.+++++ ||||. ||..|+..|+.. ...||+||.++. .+..+|
T Consensus 7 ~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~---~~~CPiCR~~i~--~~i~i~ 61 (63)
T 2vje_B 7 LKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA---GASCPICKKEIQ--LVIKVF 61 (63)
T ss_dssp GSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT---TCBCTTTCCBCC--EEEEEE
T ss_pred CCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh---CCcCCCcCchhh--ceEEEe
Confidence 45899999999999877 99998 999999999876 568999999884 344444
No 61
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=2.7e-09 Score=83.63 Aligned_cols=43 Identities=35% Similarity=0.722 Sum_probs=37.8
Q ss_pred ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
...|+||++.+.+++.++|||. ||..|+.. ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-------~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-------VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-------CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-------CCCCccCCceecC
Confidence 4689999999999999999999 99999953 3589999998854
No 62
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.75 E-value=1e-08 Score=81.84 Aligned_cols=52 Identities=33% Similarity=0.683 Sum_probs=42.7
Q ss_pred CCccccccccCCCC--CcEEccCC-----CccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 133 GSFFDCNICLDLSR--DPVVTCCG-----HLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 133 ~~~~~C~ICl~~~~--~pv~l~CG-----H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.+...|.||++.+. +++++||+ |.||..||.+|+.. ++...||+|+..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~-~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKS-SDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHH-HCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhh-CCCCCCCCCCCeeecC
Confidence 34569999999884 56788996 99999999999987 2346899999988654
No 63
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.70 E-value=2.1e-09 Score=92.01 Aligned_cols=46 Identities=30% Similarity=0.696 Sum_probs=0.0
Q ss_pred cccccccCCCCCcE------------------EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRDPV------------------VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~pv------------------~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
..|+||++.|.++. .++|||.||..||..|+.. ...||+||+++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~---~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT---RQVCPLDNREWEF 112 (117)
T ss_dssp -------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc---CCcCCCCCCeeee
Confidence 48999999997642 2589999999999999998 6789999998754
No 64
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.69 E-value=1.6e-08 Score=78.06 Aligned_cols=45 Identities=27% Similarity=0.593 Sum_probs=39.1
Q ss_pred CCccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.+...|.||++.+.+++++||||. ||..|+.. ...||+||.++..
T Consensus 13 ~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-------CCCCCCCCcchhc
Confidence 345799999999999999999999 99999873 3589999998754
No 65
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.62 E-value=6e-09 Score=82.83 Aligned_cols=43 Identities=28% Similarity=0.725 Sum_probs=38.2
Q ss_pred ccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
...|+||++.+.+++.+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~-------~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL-------QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC-------SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc-------CcCCCCCchhhC
Confidence 3589999999999999999999 999998765 279999998864
No 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.60 E-value=8e-09 Score=84.24 Aligned_cols=48 Identities=27% Similarity=0.634 Sum_probs=39.2
Q ss_pred CccccccccCCCCCcEEc---cCCCccChhhHHHHHHhc---C--CCCCCCC--CCcc
Q 014562 134 SFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVH---S--DAKECPV--CKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~---~--~~~~CPv--Cr~~ 181 (422)
+.+.|+||++.+..+..+ +|||.||..||..|+... + ....||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 467999999999887543 799999999999998751 2 2358999 9887
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.53 E-value=2e-08 Score=100.85 Aligned_cols=44 Identities=32% Similarity=0.825 Sum_probs=39.5
Q ss_pred CccccccccCCCCCcEEccCCCc-cChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHL-FCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~-FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+.+.|+||++.+.+|+.++|||. ||..|+..| ..||+||.++..
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-------CcCCCCCCCccC
Confidence 45799999999999999999999 999999877 379999998753
No 68
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.34 E-value=4.1e-07 Score=71.58 Aligned_cols=49 Identities=24% Similarity=0.580 Sum_probs=40.2
Q ss_pred CccccccccCCCCCcEE-ccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
....|.||++.+..... ..|+|.|+..||.+|++.. ....||+|+..+.
T Consensus 14 ~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~-~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 14 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSN-AEPRCPHCNDYWP 63 (74)
T ss_dssp SSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTC-SSCCCTTTCSCCC
T ss_pred CCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhc-CCCCCCCCcCcCC
Confidence 34599999999986653 3899999999999999872 2378999998765
No 69
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.16 E-value=1.3e-06 Score=65.77 Aligned_cols=50 Identities=24% Similarity=0.518 Sum_probs=40.8
Q ss_pred CccccccccCCCCCcEEccCC--C---ccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVVTCCG--H---LFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CG--H---~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
+...|.||++...++.++||. | .||..||.+|+.. +++..||+|+..+..
T Consensus 5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~-~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTI-SRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHH-HTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHh-CCCCccCCCCCeeec
Confidence 456999999987777778865 4 8999999999986 336789999998754
No 70
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.12 E-value=9.2e-07 Score=88.06 Aligned_cols=52 Identities=29% Similarity=0.664 Sum_probs=40.3
Q ss_pred CCccccccccCCCCC----cE----EccCCCccChhhHHHHHHhcCC--------CCCCCCCCccccc
Q 014562 133 GSFFDCNICLDLSRD----PV----VTCCGHLFCWPCLYRWLHVHSD--------AKECPVCKGEVTV 184 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~----pv----~l~CGH~FC~~CI~~wl~~~~~--------~~~CPvCr~~l~~ 184 (422)
+....|+||++.+.+ |. ...|||.||..||.+|++.... ...||.|+.+++.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 355699999999876 21 2479999999999999986221 1479999998763
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.90 E-value=5.9e-06 Score=68.19 Aligned_cols=49 Identities=24% Similarity=0.462 Sum_probs=40.5
Q ss_pred ccccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 137 DCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 137 ~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.|++|--.+..- .++||+|+||..|+..|.+. ..+.||.|+.++..-..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~--~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKK--GDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHT--TCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhc--cCCCCcCcCCeeeeeEE
Confidence 699999888764 57899999999999999875 35789999998865443
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=96.91 E-value=0.00073 Score=64.24 Aligned_cols=50 Identities=24% Similarity=0.551 Sum_probs=40.6
Q ss_pred CccccccccCCCCCcEEc-cCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 134 SFFDCNICLDLSRDPVVT-CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
....|.||.+.....+.- .|+|.||..|+..|++. .....||.|+.....
T Consensus 179 ~i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~-~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQS-NAEPRCPHCNDYWPH 229 (238)
T ss_dssp TCCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTT-CSSCBCTTTCCBCCS
T ss_pred CCCcCcchhhHHhCCcccCccChHHHHHHHHHHHHh-CCCCCCCCCCCCCCC
Confidence 356999999999877643 49999999999999986 235689999887654
No 73
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=96.53 E-value=0.00043 Score=77.14 Aligned_cols=69 Identities=12% Similarity=0.061 Sum_probs=59.5
Q ss_pred CCCCccccccccCCCCCcEEccCC-CccChhhHHHHHHhcCCCCCCCCCCcccccCCceecccCCCCCCCccc
Q 014562 131 NDGSFFDCNICLDLSRDPVVTCCG-HLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNITPIYGRGNSTREPEE 202 (422)
Q Consensus 131 ~~~~~~~C~ICl~~~~~pv~l~CG-H~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l~~~~~~~~~~~~~~e 202 (422)
..-+++.|||-++.+.+||+++.| ++|-+.+|.+|+.. ..+||+-+.++...++.||+.+...+..|..
T Consensus 887 ~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~---~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~ 956 (968)
T 3m62_A 887 DVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS---DSTDPFNRMPLKLEDVTPNEELRQKILCFKK 956 (968)
T ss_dssp CSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT---CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred CCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc---CCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence 345789999999999999999998 69999999999987 5689999999999999998877666555543
No 74
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=96.00 E-value=0.0028 Score=51.59 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=27.1
Q ss_pred ccccccccCC-CCCcEE--ccCCCccChhhHHHHH
Q 014562 135 FFDCNICLDL-SRDPVV--TCCGHLFCWPCLYRWL 166 (422)
Q Consensus 135 ~~~C~ICl~~-~~~pv~--l~CGH~FC~~CI~~wl 166 (422)
++.|+||.+. +.+++. +.|+|.||..|+..+.
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h 37 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH 37 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence 4799999975 677777 8999999999999743
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=94.26 E-value=0.016 Score=47.13 Aligned_cols=49 Identities=31% Similarity=0.638 Sum_probs=39.0
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
.-+.|-.|+...+ ..+...-|.+|..|+...+.. +..||+|++++..+-
T Consensus 27 G~~nCKsCWf~~k-~LV~C~dHYLCl~CLtlmL~~---SdrCpIC~~pLPtkl 75 (99)
T 2ko5_A 27 GPQFCKSCWFENK-GLVECNNHYLCLNCLTLLLSV---SNRCPICKMPLPTKL 75 (99)
T ss_dssp CCCCCCSSCSCCS-SEEECSSCEEEHHHHHHTCSS---SSEETTTTEECCCCS
T ss_pred CcccChhhccccC-CeeeecchhhHHHHHHHHHhh---ccCCcccCCcCCcce
Confidence 4568999998776 344555699999999988887 779999999987543
No 76
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=91.74 E-value=0.17 Score=40.01 Aligned_cols=45 Identities=27% Similarity=0.673 Sum_probs=34.4
Q ss_pred CCccccccccCCCCCcEEccC----CCccChhhHHHHHHhc--CCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVTCC----GHLFCWPCLYRWLHVH--SDAKECPV 177 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~C----GH~FC~~CI~~wl~~~--~~~~~CPv 177 (422)
...+.|.+|.+.+.+.....| +|.||..|-...++.+ .....||-
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPS 63 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPS 63 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTT
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHhcCCCCcEECCC
Confidence 456899999999999866555 7999999999988872 22344554
No 77
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=89.58 E-value=0.28 Score=49.26 Aligned_cols=54 Identities=28% Similarity=0.641 Sum_probs=41.0
Q ss_pred ccccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCcee
Q 014562 135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~ 189 (422)
.+.|||-+..+..|+. ..|.|.-|.+-. .|+.. ......||+|.+.+...+|..
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~-sfL~~~~~~~~W~CPIC~k~~~~~dL~I 305 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDAL-WFLHSQLQIPTWQCPVCQIDIALENLAI 305 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEHH-HHHHHHHHSCCCBCTTTCCBCCGGGEEE
T ss_pred eecCCCccccccccCcCCcCCCcceECHH-HHHHHhhcCCceeCCCCCcccCHHHeeE
Confidence 4799999999999984 689999776542 23322 245789999999988777654
No 78
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=88.40 E-value=0.39 Score=48.07 Aligned_cols=54 Identities=20% Similarity=0.434 Sum_probs=40.7
Q ss_pred ccccccccCCCCCcEE-ccCCCccChhhHHHHHHh--cCCCCCCCCCCcccccCCcee
Q 014562 135 FFDCNICLDLSRDPVV-TCCGHLFCWPCLYRWLHV--HSDAKECPVCKGEVTVKNITP 189 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~-l~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l~~~~l~~ 189 (422)
.+.|||-...+..|+. ..|.|.-|.+-. .|+.. ......||+|.+.+...+|.-
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~-sfL~~~~~~~~W~CPiC~k~~~~~dL~I 271 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAA-LYLQMNEKKPTWICPVCDKKAAYESLIL 271 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEEHH-HHHHHHHHSCCCBCTTTCSBCCGGGEEE
T ss_pred eeeCCCccceeccCCcCCCCCCCccCCHH-HHHHHHhhCCCeECCCCCcccCHHHeEE
Confidence 4689999999999984 699999776543 23322 245789999999988777654
No 79
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=75.73 E-value=3.1 Score=33.39 Aligned_cols=47 Identities=28% Similarity=0.496 Sum_probs=34.5
Q ss_pred cccccccCCCCC-----cE--EccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRD-----PV--VTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv--~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
-.|.||-+.+-- +. .-.|+--.|..|+.--.+. +...||.|+.++..
T Consensus 17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke--G~q~CpqCktrYkr 70 (93)
T 1weo_A 17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE--GTQNCPQCKTRYKR 70 (93)
T ss_dssp CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT--SCSSCTTTCCCCCC
T ss_pred CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc--cCccccccCCcccc
Confidence 599999998632 22 2368888899998754443 57899999998763
No 80
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=72.45 E-value=1.3 Score=35.90 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=30.6
Q ss_pred CCccccccccCCCCCcEEc---cCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
++...| ||........++ .|.-.|+..|+..-.........||.|+
T Consensus 26 ~d~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~ 74 (98)
T 2lv9_A 26 TDVTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQ 74 (98)
T ss_dssp CCBCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTS
T ss_pred CCCEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCc
Confidence 345677 898877665544 5777888899864333333457899995
No 81
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=71.32 E-value=3.1 Score=31.35 Aligned_cols=44 Identities=27% Similarity=0.678 Sum_probs=31.6
Q ss_pred cccccccCCCCCcEE--ccCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 136 FDCNICLDLSRDPVV--TCCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~--l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
..|.||.+.-. ++ -.|...||..|+...+.. ..+...||.|...
T Consensus 13 ~~C~vC~~~~~--ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 13 ARCGVCGDGTD--VLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CCCTTTSCCTT--CEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCcCCCCCCCe--EEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 47999986422 23 268899999999877655 2346789999754
No 82
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=69.23 E-value=1.1 Score=33.22 Aligned_cols=33 Identities=30% Similarity=0.717 Sum_probs=24.4
Q ss_pred cccccccCCCCCc-----EEc-c--CCCccChhhHHHHHHh
Q 014562 136 FDCNICLDLSRDP-----VVT-C--CGHLFCWPCLYRWLHV 168 (422)
Q Consensus 136 ~~C~ICl~~~~~p-----v~l-~--CGH~FC~~CI~~wl~~ 168 (422)
..||-|...+... ++- . |++.||+.|...|-..
T Consensus 7 k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~ 47 (60)
T 1wd2_A 7 KECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPH 47 (60)
T ss_dssp CCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGG
T ss_pred eECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccC
Confidence 4788888887653 222 3 9999999999888754
No 83
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=61.29 E-value=2 Score=32.74 Aligned_cols=50 Identities=18% Similarity=0.476 Sum_probs=33.7
Q ss_pred CccccccccCCCCCcEEc---cCCCccChhhHHHHHHhc-CCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVH-SDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~-~~~~~CPvCr~~l~ 183 (422)
+...|.||........++ .|.-.||..|+..-.... .....||.|...+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 456899998876543333 678889999987543321 24678999976553
No 84
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=60.90 E-value=5.9 Score=34.41 Aligned_cols=48 Identities=25% Similarity=0.519 Sum_probs=33.2
Q ss_pred CCCccccccccCCCCCcEEccCCCccChhhHHHHHH--------hcCCCCCCCCCC
Q 014562 132 DGSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLH--------VHSDAKECPVCK 179 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~--------~~~~~~~CPvCr 179 (422)
+.....|.||.+--.--.--.|-.+||..||..-+. ...+...||.|.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~ 115 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICH 115 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeeccc
Confidence 334568999987543112236888999999997653 135678899995
No 85
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=60.23 E-value=4.1 Score=33.74 Aligned_cols=50 Identities=14% Similarity=0.173 Sum_probs=38.1
Q ss_pred ccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 135 FFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 135 ~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
-|.|..|...+.+ .....=|..||..|..+.+.. ...|-.|..+|....+
T Consensus 32 CF~C~~C~~~L~~~~~~~~~~~g~~yC~~cy~~~f~~---~~~C~~C~~~I~~~~~ 84 (122)
T 1m3v_A 32 CLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---SGAGGSGGHMGSGGDV 84 (122)
T ss_dssp HHCCSSSCCCTTTSEECCEEETTEEECHHHHHHHHCC---CCSSSCSSCCSCCEES
T ss_pred CCCcCCCCCcccccCCeEEEECCeeecHHHHHHHcCC---CCccccCCCCcCchhe
Confidence 3789999999863 345677889999999876654 3479999998876443
No 86
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=60.00 E-value=5.8 Score=30.04 Aligned_cols=32 Identities=25% Similarity=0.595 Sum_probs=23.8
Q ss_pred CCCccccccccCCCCCcEEccC-CCccChhhHHH
Q 014562 132 DGSFFDCNICLDLSRDPVVTCC-GHLFCWPCLYR 164 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~l~C-GH~FC~~CI~~ 164 (422)
.++..-|.||.+... -.-+.| |-.||..|+..
T Consensus 5 ~ee~pWC~ICneDAt-lrC~gCdgDLYC~rC~rE 37 (67)
T 2d8v_A 5 SSGLPWCCICNEDAT-LRCAGCDGDLYCARCFRE 37 (67)
T ss_dssp CCCCSSCTTTCSCCC-EEETTTTSEEECSSHHHH
T ss_pred CcCCCeeEEeCCCCe-EEecCCCCceehHHHHHH
Confidence 445678999999843 234678 88999999654
No 87
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=59.14 E-value=4.9 Score=31.85 Aligned_cols=33 Identities=27% Similarity=0.355 Sum_probs=25.0
Q ss_pred CCCccccccccCCCCCc----EEccCCCccChhhHHH
Q 014562 132 DGSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYR 164 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~ 164 (422)
..+...|.+|...|.-- .--.||++||..|...
T Consensus 6 ~~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 6 SGMESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCCCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred CCcCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 44556899999988643 2358999999999754
No 88
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=58.64 E-value=2 Score=43.03 Aligned_cols=49 Identities=24% Similarity=0.413 Sum_probs=0.0
Q ss_pred CccccccccCCCCCc----EEccCCCccChhhHHHHHHh----cCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHV----HSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~----~~~~~~CPvCr~~l 182 (422)
+...|.+|...|.-- ....||++||..|...+..- ......|-.|-..+
T Consensus 374 ~~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 374 HVMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp ---------------------------------------------------------
T ss_pred cCCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 345899999988632 24589999999998765422 11234566665433
No 89
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=57.68 E-value=9 Score=33.39 Aligned_cols=48 Identities=10% Similarity=0.371 Sum_probs=37.2
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
+=|.|..|...+.......=|..||..|..+.+.. .|..|...|....
T Consensus 32 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~~-----~C~~C~~~I~~~~ 79 (169)
T 2rgt_A 32 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFGT-----KCAACQLGIPPTQ 79 (169)
T ss_dssp TTSBCTTTCCBCCSCCEESSSCEECHHHHHHHHSC-----BCTTTCCBCCTTS
T ss_pred ccCccCCCCCcCCCCCcccCCeeeecccccccccc-----cccccccccCCCc
Confidence 45799999988876544567889999998876654 8999999886544
No 90
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=56.60 E-value=1.7 Score=32.24 Aligned_cols=50 Identities=22% Similarity=0.380 Sum_probs=33.1
Q ss_pred CCccccccccCCCC---CcEEc--cCCCccChhhHHHHHHh----cCCCCCCCCCCccc
Q 014562 133 GSFFDCNICLDLSR---DPVVT--CCGHLFCWPCLYRWLHV----HSDAKECPVCKGEV 182 (422)
Q Consensus 133 ~~~~~C~ICl~~~~---~pv~l--~CGH~FC~~CI~~wl~~----~~~~~~CPvCr~~l 182 (422)
.+...|.||..... ..+++ .|...||..|+..-+.. ..+...||.|....
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 34568999998643 22332 78888999998754321 24567899996543
No 91
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=55.84 E-value=4.2 Score=34.37 Aligned_cols=29 Identities=24% Similarity=0.515 Sum_probs=22.6
Q ss_pred ccccccccCCCCCc----EEccCCCccChhhHH
Q 014562 135 FFDCNICLDLSRDP----VVTCCGHLFCWPCLY 163 (422)
Q Consensus 135 ~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~ 163 (422)
...|.+|...|.-- .--.||++||..|..
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~ 101 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSA 101 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSC
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhC
Confidence 45899999988643 235899999999954
No 92
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=55.03 E-value=7.5 Score=31.17 Aligned_cols=44 Identities=25% Similarity=0.547 Sum_probs=29.3
Q ss_pred CccccccccCCCCCcEEcc-----CC-CccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDPVVTC-----CG-HLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~-----CG-H~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
+...| ||...... .++. |. ..||..|+. +.. ..+...||.|+..
T Consensus 35 e~~yC-iC~~~~~g-~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 35 EPTYC-LCHQVSYG-EMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp CCBCS-TTCCBCCS-CCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCcEE-ECCCCCCC-CEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCc
Confidence 45677 99987543 3443 55 579999987 322 2346789999764
No 93
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=54.50 E-value=1.5 Score=37.08 Aligned_cols=43 Identities=19% Similarity=0.390 Sum_probs=27.7
Q ss_pred CccccccccCCCCCc----EEccCCCccChhhHHHHHHhcCCCCCCCCCC
Q 014562 134 SFFDCNICLDLSRDP----VVTCCGHLFCWPCLYRWLHVHSDAKECPVCK 179 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr 179 (422)
+...|..|...|.-- .--.||.+||..|....... ...|-.|.
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~---vRVC~~C~ 64 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNG---PRLCLLCQ 64 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC-------CCEEHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCC---ceECHHHH
Confidence 345899999988643 23589999999997654432 44566663
No 94
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=54.08 E-value=5.9 Score=30.79 Aligned_cols=31 Identities=26% Similarity=0.554 Sum_probs=23.7
Q ss_pred CCccccccccCCCCCc----EEccCCCccChhhHH
Q 014562 133 GSFFDCNICLDLSRDP----VVTCCGHLFCWPCLY 163 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~ 163 (422)
.+...|.+|...|.-- .--.||++||..|..
T Consensus 17 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~ 51 (82)
T 2yw8_A 17 DEATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSS 51 (82)
T ss_dssp CCCCBCTTTCCBCBTTBCCEECTTTCCEECSGGGC
T ss_pred ccCCcccCcCCcccCccccccCCCCCCEEChHHhC
Confidence 3456899999988643 235899999999965
No 95
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=53.72 E-value=6.9 Score=30.57 Aligned_cols=32 Identities=22% Similarity=0.393 Sum_probs=24.3
Q ss_pred CCccccccccCCCCCc----EEccCCCccChhhHHH
Q 014562 133 GSFFDCNICLDLSRDP----VVTCCGHLFCWPCLYR 164 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~ 164 (422)
.+...|.+|...|.-- .--.||++||..|...
T Consensus 19 ~~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 54 (84)
T 1z2q_A 19 EDAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRH 54 (84)
T ss_dssp TTCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCC
T ss_pred CCCCCCcCcCCccccchhcccccCCCcEEChHHhCC
Confidence 3456899999998643 2358999999999653
No 96
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=53.40 E-value=4.7 Score=29.63 Aligned_cols=48 Identities=21% Similarity=0.342 Sum_probs=30.4
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
....|.||.+.-.--.--.|...||..|+..-+.. ..+...||.|...
T Consensus 8 ~~~~C~vC~~~g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCCSSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCCCCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45689999863211011257888999998754433 2346789999654
No 97
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=53.34 E-value=7.4 Score=32.02 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=36.5
Q ss_pred CccccccccCCCCC-cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRD-PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~-pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+-|.|..|...+.. .....=|..||..|..+.+.. .|..|.++|...
T Consensus 29 ~CF~C~~C~~~L~~~~f~~~~g~~yC~~cy~~~~~~-----~C~~C~~~I~~~ 76 (126)
T 2xqn_T 29 KHFCCFDCDSILAGEIYVMVNDKPVCKPCYVKNHAV-----VCQGCHNAIDPE 76 (126)
T ss_dssp GGSBCTTTCCBCTTSEEEEETTEEEEHHHHHHHSCC-----BCTTTCSBCCTT
T ss_pred CCCCcCCCCCCCCcCEEEeECCEEechHHhCcCcCc-----cCcccCCcCCcC
Confidence 34799999998876 345677889999998765543 899999998853
No 98
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=53.34 E-value=12 Score=29.79 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=21.9
Q ss_pred ccccccccCCCCCcEEc---cCCCccChhhHHHH
Q 014562 135 FFDCNICLDLSRDPVVT---CCGHLFCWPCLYRW 165 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~w 165 (422)
...|.||-..- ...+. -|+-+||..|+.+.
T Consensus 15 D~~C~VC~~~t-~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 15 DEMCDVCEVWT-AESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp SCCCTTTCCCC-SSCCSSCSSSSSCCCHHHHHHH
T ss_pred CcccCcccccc-ccceeccccccccccHhhcccc
Confidence 45999997533 33333 57899999999985
No 99
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.08 E-value=2.8 Score=30.84 Aligned_cols=50 Identities=22% Similarity=0.388 Sum_probs=32.3
Q ss_pred CCCccccccccCCCCC-cEEc---cCCCccChhhHHHHHHh--cCCCCCCCCCCcc
Q 014562 132 DGSFFDCNICLDLSRD-PVVT---CCGHLFCWPCLYRWLHV--HSDAKECPVCKGE 181 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~-pv~l---~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~ 181 (422)
+++...|+||...+.+ ..++ .|...||..|+.--... ......||.|+..
T Consensus 3 ~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 3 SGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp CSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3456789999988743 2233 67788999998632221 1246789998653
No 100
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=52.37 E-value=1.8 Score=31.23 Aligned_cols=47 Identities=21% Similarity=0.504 Sum_probs=30.0
Q ss_pred CCCccccccccCCCCCcEE--ccCCCccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 132 DGSFFDCNICLDLSRDPVV--TCCGHLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv~--l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
+.....|.||...- .++ -.|...||..|+..-+.. ..+...||.|..
T Consensus 6 ~~~~~~C~vC~~~g--~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 6 SGHEDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CSSCCSCSSSCCSS--CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCCccCCCCC--eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 44556899999752 222 268888999998754433 223566888743
No 101
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=52.28 E-value=3.9 Score=36.52 Aligned_cols=47 Identities=19% Similarity=0.316 Sum_probs=30.9
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHh-cCCCCCCCCCCccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV-HSDAKECPVCKGEV 182 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~l 182 (422)
..|.||.+.-.--.--.|...||..|+...+.. ..+...||.|+..-
T Consensus 5 ~~C~~C~~~g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 5 DWCAVCQNGGELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SSCTTTCCCSSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CccccCCCCCeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 479999865221112258888999998765543 23467899998643
No 102
>2pv0_B DNA (cytosine-5)-methyltransferase 3-like; DNMT3L, unmethylated H3K4, de novo DNA methylation, transferase regulator; HET: DNA; 3.30A {Homo sapiens} PDB: 2pvc_B*
Probab=52.26 E-value=9.9 Score=38.29 Aligned_cols=49 Identities=18% Similarity=0.415 Sum_probs=34.1
Q ss_pred CCccccccccCCCCCcEE--ccCCCccChhhHHHHHHh-------cCCCCCCCCCCcc
Q 014562 133 GSFFDCNICLDLSRDPVV--TCCGHLFCWPCLYRWLHV-------HSDAKECPVCKGE 181 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~--l~CGH~FC~~CI~~wl~~-------~~~~~~CPvCr~~ 181 (422)
.-...|.+|-+--.--.- ..|...||..||..++.. ..+...|=+|.-.
T Consensus 91 G~~~yCr~C~~Gg~l~~Cdn~~C~r~FC~~Ci~~n~g~~~~~~i~~~d~W~Cf~C~p~ 148 (386)
T 2pv0_B 91 GYQSYCSICCSGETLLICGNPDCTRCYCFECVDSLVGPGTSGKVHAMSNWVCYLCLPS 148 (386)
T ss_dssp SSBCSCTTTCCCSSCEECCSTTCCCEECHHHHHHHTCTTHHHHHHHCSSCCCTTTSSC
T ss_pred CCcccceEcCCCCeEEEeCCCCCCcchHHHHHHHhcChhHHHHhhccCCceEEEcCCc
Confidence 345699999975432122 278899999999998732 2356789999653
No 103
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=52.08 E-value=2.7 Score=38.38 Aligned_cols=47 Identities=19% Similarity=0.338 Sum_probs=31.5
Q ss_pred CccccccccCCCCCcEE--ccCCCccChhhHHHHHHh-cCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRDPVV--TCCGHLFCWPCLYRWLHV-HSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~--l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~l 182 (422)
....|.+|...-. ++ -.|...||..|+...+.. ..+...||.|+..-
T Consensus 6 ~~~~C~~C~~~g~--ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 6 NEDWCAVCQNGGD--LLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SCSSBTTTCCCEE--EEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCc--eEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3457999985421 22 257888999998765543 23467899997643
No 104
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.03 E-value=7.2 Score=30.43 Aligned_cols=31 Identities=26% Similarity=0.546 Sum_probs=23.2
Q ss_pred CCccccccccCCCCCc----EEccCCCccChhhHH
Q 014562 133 GSFFDCNICLDLSRDP----VVTCCGHLFCWPCLY 163 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~ 163 (422)
.+...|.+|...|.-- .--.||.+||..|..
T Consensus 12 ~~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~ 46 (84)
T 1x4u_A 12 NNFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCCS 46 (84)
T ss_dssp CCCSSCSSSCCCCCSSSCCEECSSSCCEECTTTSC
T ss_pred CCCCcCcCcCCccccchhhhhhcCCCcEEChhhcC
Confidence 3456899999988532 235799999999943
No 105
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=51.53 E-value=11 Score=28.63 Aligned_cols=45 Identities=24% Similarity=0.538 Sum_probs=29.8
Q ss_pred CccccccccCCCCCcEEcc-----CC-CccChhhHHHHHHh-cCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRDPVVTC-----CG-HLFCWPCLYRWLHV-HSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~-----CG-H~FC~~CI~~wl~~-~~~~~~CPvCr~~l 182 (422)
+...| ||....... ++. |. ..||..|+. +.. ..+...||.|....
T Consensus 15 ~~~~C-~C~~~~~g~-MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSYGE-MIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSCSS-EECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCCCC-EeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 45677 899865443 443 55 689999997 333 23567899996643
No 106
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=51.33 E-value=1.6 Score=42.79 Aligned_cols=46 Identities=24% Similarity=0.440 Sum_probs=35.7
Q ss_pred CCccccccccCCCCCcEEc----cCC--CccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 133 GSFFDCNICLDLSRDPVVT----CCG--HLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l----~CG--H~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
+..-.||||-....-.++. .=| |.+|..|-..|-.. ...||.|...
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~---R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYV---RIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECC---TTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeec---CcCCcCCCCC
Confidence 5677999999988766554 234 56899999999776 6689999775
No 107
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=49.35 E-value=7.1 Score=28.87 Aligned_cols=39 Identities=28% Similarity=0.738 Sum_probs=28.2
Q ss_pred ccccccCCCCCcE---EccCCCccChhhHHHHHHhcCCCCCCCCC
Q 014562 137 DCNICLDLSRDPV---VTCCGHLFCWPCLYRWLHVHSDAKECPVC 178 (422)
Q Consensus 137 ~C~ICl~~~~~pv---~l~CGH~FC~~CI~~wl~~~~~~~~CPvC 178 (422)
.|--|+..|.+.. -..|++.||.+|=. +. |..-..||-|
T Consensus 17 ~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~-fi--He~Lh~CPgC 58 (59)
T 1z60_A 17 FCYGCQGELKDQHVYVCAVCQNVFCVDCDV-FV--HDSLHSCPGC 58 (59)
T ss_dssp EETTTTEECTTSEEECCTTTTCCBCHHHHH-TT--TTTSCSSSTT
T ss_pred cccccCcccCCCccEECCccCcCcccchhH-HH--HhhccCCcCC
Confidence 5999999886643 35899999999943 22 2335579988
No 108
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=49.10 E-value=6.5 Score=31.21 Aligned_cols=30 Identities=27% Similarity=0.500 Sum_probs=22.9
Q ss_pred ccccccccCCCCCc----EEccCCCccChhhHHH
Q 014562 135 FFDCNICLDLSRDP----VVTCCGHLFCWPCLYR 164 (422)
Q Consensus 135 ~~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~ 164 (422)
...|.+|...|.-- .-..||++||..|...
T Consensus 20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~ 53 (90)
T 3t7l_A 20 APNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNR 53 (90)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCcCcCCCCcccchhhCccccCCCCEECCcccCC
Confidence 35899999888632 2358999999999654
No 109
>2jtn_A LIM domain-binding protein 1, LIM/homeobox protein LHX3; intramolecular (fusion) protein-protein complex, protein binding/transcription complex; NMR {Mus musculus}
Probab=48.95 E-value=8.4 Score=34.02 Aligned_cols=47 Identities=11% Similarity=0.374 Sum_probs=34.1
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+-|.|..|...+.......=|..||..|..+.+. ..|..|...|...
T Consensus 86 ~CF~C~~C~~~L~~~~f~~~g~~yC~~~y~~~f~-----~kC~~C~~~I~~~ 132 (182)
T 2jtn_A 86 KCLKCSDCHVPLAERCFSRGESVYCKDDFFKRFG-----TKCAACQLGIPPT 132 (182)
T ss_dssp STTSCTTTCCCCSSCCEEETTEEECHHHHHHTTS-----CCCTTTCCCCCSS
T ss_pred ccCccCCCCCccCCCceeECCEeeecCccccccc-----cccccCCCccCCC
Confidence 4478888888876543445678899999876443 3899999887654
No 110
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=47.67 E-value=6.4 Score=28.88 Aligned_cols=45 Identities=18% Similarity=0.434 Sum_probs=31.1
Q ss_pred CccccccccCCCCCcEEc--cCCCccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVT--CCGHLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l--~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
....|.||... ..++. .|-..||..|+..-+.. ..+...||.|.+
T Consensus 10 ~~~~C~vC~~~--g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~ 57 (61)
T 2l5u_A 10 HQDYCEVCQQG--GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK 57 (61)
T ss_dssp CCSSCTTTSCC--SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred CCCCCccCCCC--CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence 45689999873 22322 67788999999865433 234678999965
No 111
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=46.92 E-value=18 Score=30.90 Aligned_cols=47 Identities=21% Similarity=0.468 Sum_probs=31.4
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHH-----HHh---cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRW-----LHV---HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~w-----l~~---~~~~~~CPvCr~ 180 (422)
....|.||.+--.-..--.|-..||..||.+- +.. ..+...|+.|.-
T Consensus 56 ~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44579999875321112367889999999975 222 245789999954
No 112
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.04 E-value=10 Score=30.27 Aligned_cols=49 Identities=18% Similarity=0.343 Sum_probs=32.0
Q ss_pred CCccccccccCCCCCcEEccCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 133 GSFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
.....|.||...-.--.--.|--.|+..|+..-+.. ..+...||.|...
T Consensus 23 ~n~~~C~vC~~~g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 23 DSATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSCCSSSCSSSCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCcCcCcCCCCCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 345689999975321111267778999999765543 3346789999753
No 113
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=46.03 E-value=7.2 Score=27.24 Aligned_cols=44 Identities=25% Similarity=0.566 Sum_probs=28.3
Q ss_pred ccccccCCCCCcEE---ccCCCccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 137 DCNICLDLSRDPVV---TCCGHLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 137 ~C~ICl~~~~~pv~---l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
.|.||...-....+ -.|...||..|+..-+.. ..+...||.|..
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 47888765432222 267888999999754433 234667999964
No 114
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=44.20 E-value=3.6 Score=31.10 Aligned_cols=47 Identities=13% Similarity=0.332 Sum_probs=29.5
Q ss_pred CCccccccccCCCCCcEEc---cCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 133 GSFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
.+...| ||........++ .|...|+..|+.--.........||.|+.
T Consensus 17 ~~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 17 QGLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TTCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CCceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 345678 999877654343 57778888887632221224567888854
No 115
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=43.21 E-value=5.6 Score=31.16 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=22.0
Q ss_pred cccccccCCCCC-----cEEc-cCCCccChhhHHHHHHh
Q 014562 136 FDCNICLDLSRD-----PVVT-CCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 136 ~~C~ICl~~~~~-----pv~l-~CGH~FC~~CI~~wl~~ 168 (422)
.-||-|...+.. .+.- .||+.||..|-..|-+.
T Consensus 26 ~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~ 64 (86)
T 2ct7_A 26 LWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQ 64 (86)
T ss_dssp ECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTT
T ss_pred eECcCCCchheecCCCCceEeCCCCCccccccCCchhhc
Confidence 358877664421 2333 49999999998888444
No 116
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=42.37 E-value=9.8 Score=31.10 Aligned_cols=12 Identities=42% Similarity=1.187 Sum_probs=11.4
Q ss_pred cChhhHHHHHHh
Q 014562 157 FCWPCLYRWLHV 168 (422)
Q Consensus 157 FC~~CI~~wl~~ 168 (422)
||..|+..|+..
T Consensus 43 FCRNCLskWy~~ 54 (105)
T 2o35_A 43 FCRNCLSNWYRE 54 (105)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 117
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=42.35 E-value=8.6 Score=35.24 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=22.0
Q ss_pred cccccccCCCCCc----EEccCCCccChhhHH
Q 014562 136 FDCNICLDLSRDP----VVTCCGHLFCWPCLY 163 (422)
Q Consensus 136 ~~C~ICl~~~~~p----v~l~CGH~FC~~CI~ 163 (422)
..|.+|...|.-- .--.||++||..|..
T Consensus 162 ~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~ 193 (220)
T 1dvp_A 162 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTA 193 (220)
T ss_dssp SBCTTTCCBCCSSSCCEECTTTCCEECSTTSC
T ss_pred CccCCCCCccCCcccccccCCcCCEEChHHhC
Confidence 5899999988632 235899999999954
No 118
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=42.10 E-value=9.6 Score=31.09 Aligned_cols=12 Identities=50% Similarity=1.304 Sum_probs=11.3
Q ss_pred cChhhHHHHHHh
Q 014562 157 FCWPCLYRWLHV 168 (422)
Q Consensus 157 FC~~CI~~wl~~ 168 (422)
||..|+..|+..
T Consensus 42 FCRNCLskWy~~ 53 (104)
T 3fyb_A 42 FCRNCLAKWLME 53 (104)
T ss_dssp CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999986
No 119
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=41.71 E-value=5.3 Score=26.32 Aligned_cols=14 Identities=21% Similarity=0.408 Sum_probs=9.4
Q ss_pred ccccccccCCCCCc
Q 014562 135 FFDCNICLDLSRDP 148 (422)
Q Consensus 135 ~~~C~ICl~~~~~p 148 (422)
-|.||||+..+..+
T Consensus 5 GFiCP~C~~~l~s~ 18 (34)
T 3mjh_B 5 GFICPQCMKSLGSA 18 (34)
T ss_dssp EEECTTTCCEESSH
T ss_pred ccCCcHHHHHcCCH
Confidence 36777777766654
No 120
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=41.26 E-value=8.7 Score=30.20 Aligned_cols=47 Identities=21% Similarity=0.451 Sum_probs=34.5
Q ss_pred CccccccccCCCCCc-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+=|.|..|...+... ....=|..||..|..+.+ ...|..|..+|...
T Consensus 32 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~cy~~~~-----~~~C~~C~~~I~~~ 79 (101)
T 2cup_A 32 TCFRCAKCLHPLANETFVAKDNKILCNKCTTRED-----SPKCKGCFKAIVAG 79 (101)
T ss_dssp TTCCCSSSCCCTTSSCCEEETTEEECHHHHTTCC-----CCBCSSSCCBCCSS
T ss_pred cCCcccccCCCCCcCeeECcCCEEEChhHhhhhc-----CCccccCCCccccC
Confidence 347899999888654 455678889999975433 34899999988743
No 121
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=40.73 E-value=2.6 Score=32.76 Aligned_cols=14 Identities=36% Similarity=0.985 Sum_probs=12.1
Q ss_pred cCCCccChhhHHHH
Q 014562 152 CCGHLFCWPCLYRW 165 (422)
Q Consensus 152 ~CGH~FC~~CI~~w 165 (422)
.|||.||..|...|
T Consensus 55 ~C~~~FC~~C~~~w 68 (80)
T 2jmo_A 55 GCGFAFCRECKEAY 68 (80)
T ss_dssp CCSCCEETTTTEEC
T ss_pred CCCCeeccccCccc
Confidence 59999999998765
No 122
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=40.41 E-value=18 Score=29.79 Aligned_cols=49 Identities=14% Similarity=0.331 Sum_probs=37.0
Q ss_pred CccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+=|.|..|...+.. .....=|..||..|..+.+.. ...|..|..+|...
T Consensus 28 ~CF~C~~C~~~L~~~~~~~~~~~g~~yC~~~y~~~~~~---~~~C~~C~~~I~~~ 79 (131)
T 2xjy_A 28 DCLSCDLCGCRLGEVGRRLYYKLGRKLCRRDYLRLFGQ---DGLCASCDKRIRAY 79 (131)
T ss_dssp TTCBCTTTCCBCSSTTCCEEEETTEEECHHHHHHHHCC---CEECTTTCCEECTT
T ss_pred HHcccCcCCCccccCCCeEEEECCEEeecCchhhhCCC---ccChhhcCCccCcc
Confidence 45799999988853 456677889999998876543 33799999988653
No 123
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=40.36 E-value=17 Score=28.11 Aligned_cols=39 Identities=21% Similarity=0.433 Sum_probs=30.2
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+...++..-|..||..|+ .|-.|+..|...
T Consensus 26 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 64 (90)
T 2dar_A 26 PMCAHCNQVIRGPFLVALGKSWHPEEF-----------NCAHCKNTMAYI 64 (90)
T ss_dssp CBBSSSCCBCCSCEEEETTEEECTTTC-----------BCSSSCCBCSSS
T ss_pred CCCccCCCEecceEEEECCccccccCC-----------ccCCCCCCCCCC
Confidence 478999888877777777888888774 588888887644
No 124
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=39.72 E-value=9.5 Score=35.27 Aligned_cols=29 Identities=24% Similarity=0.567 Sum_probs=22.6
Q ss_pred cccccccCCCCCc----EEccCCCccChhhHHH
Q 014562 136 FDCNICLDLSRDP----VVTCCGHLFCWPCLYR 164 (422)
Q Consensus 136 ~~C~ICl~~~~~p----v~l~CGH~FC~~CI~~ 164 (422)
..|.+|...|.-- .--.||++||..|-..
T Consensus 165 ~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~ 197 (226)
T 3zyq_A 165 EECHRCRVQFGVMTRKHHCRACGQIFCGKCSSK 197 (226)
T ss_dssp SBCTTTCCBCBTTBCCEECTTTCCEECTTTCCE
T ss_pred CCCcCcCCCCCccccccccCCCcCEeChhhcCC
Confidence 4899999888633 2468999999999653
No 125
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=39.41 E-value=33 Score=26.24 Aligned_cols=42 Identities=19% Similarity=0.273 Sum_probs=32.9
Q ss_pred CccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 134 SFFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
....|..|...+...++..-+..||..|+ .|-.|...|....
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~~ 65 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF-----------VCADCNLNLKQKG 65 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC-----------CCSSSCCCTTTSC
T ss_pred cCCCcccCCCEecccEEEECCceECccCC-----------EecCCCCCCCCCC
Confidence 34589999998887777778888888884 5889998886543
No 126
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=38.99 E-value=13 Score=28.21 Aligned_cols=27 Identities=26% Similarity=0.469 Sum_probs=21.3
Q ss_pred ccccccCCCCCc----EEccCCCccChhhHH
Q 014562 137 DCNICLDLSRDP----VVTCCGHLFCWPCLY 163 (422)
Q Consensus 137 ~C~ICl~~~~~p----v~l~CGH~FC~~CI~ 163 (422)
.|.+|...|.-- .--.||++||..|..
T Consensus 13 ~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~ 43 (73)
T 1vfy_A 13 ACMICSKKFSLLNRKHHCRSCGGVFCQEHSS 43 (73)
T ss_dssp BCTTTCCBCBTTBCCEECTTTCCEECGGGSC
T ss_pred cccCCCCccCCccccccCCCCCEEEcccccC
Confidence 799999988643 235799999999954
No 127
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.85 E-value=8.4 Score=29.31 Aligned_cols=47 Identities=19% Similarity=0.365 Sum_probs=30.9
Q ss_pred CccccccccCCCCCcEEc---cCCCccChhhHHHHHH------hcCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDPVVT---CCGHLFCWPCLYRWLH------VHSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~------~~~~~~~CPvCr~~ 181 (422)
+...| ||........++ .|...||..|+.--.. .......||.|+..
T Consensus 15 ~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 15 NALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp TCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 45677 899887654333 5788899999852111 01347889999653
No 128
>1rut_X Flinc4, fusion protein of LMO4 protein and LIM domain- binding protein 1; B-tandem zipper, protein binding; 1.30A {Mus musculus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 2dfy_X 2xjz_I 2xjy_B
Probab=38.79 E-value=9.2 Score=33.99 Aligned_cols=49 Identities=18% Similarity=0.426 Sum_probs=36.5
Q ss_pred CccccccccCCCCC---cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 134 SFFDCNICLDLSRD---PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 134 ~~~~C~ICl~~~~~---pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+=|.|..|...+.. .....=|..||..|..+.+.. ...|..|.+.|...
T Consensus 31 ~CF~C~~C~~~L~~~g~~~~~~~g~~yC~~cy~~~~~~---~~~C~~C~~~I~~~ 82 (188)
T 1rut_X 31 RCLKCSSCQAQLGDIGTSSYTKSGMILCRNDYIRLFGN---SGACSACGQSIPAS 82 (188)
T ss_dssp GGCBCTTTCCBHHHHCSEEEEETTEEECHHHHHHHHSC---CEECTTTCCEECTT
T ss_pred cCcccCCCCcccccCCceEEEeCCcccccccccccccc---CCccccCCCccccC
Confidence 34789999888864 456667889999998776543 22699999988653
No 129
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=38.35 E-value=26 Score=26.77 Aligned_cols=48 Identities=19% Similarity=0.366 Sum_probs=30.7
Q ss_pred CccccccccCCCC-CcEEc---cCCCccChhhHHHHHHh--cCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSR-DPVVT---CCGHLFCWPCLYRWLHV--HSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~-~pv~l---~CGH~FC~~CI~~wl~~--~~~~~~CPvCr~~l 182 (422)
+...| ||...+. ...++ .|...||..|+.--... ......||.|+...
T Consensus 11 ~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 11 VPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 44566 9998874 22233 57888999998632221 12467899997654
No 130
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.97 E-value=28 Score=26.00 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.6
Q ss_pred ccccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 135 FFDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
...|..|...+...++..-+..||..|+ .|-.|+..|..
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (79)
T 1x62_A 15 LPMCDKCGTGIVGVFVKLRDRHRHPECY-----------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCSSSCCCCCSSCEECSSCEECTTTT-----------SCSSSCCCHHH
T ss_pred CCccccCCCCccCcEEEECcceeCcCcC-----------eeCCCCCCCCC
Confidence 4589999998887777788888888884 58899888764
No 131
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=37.84 E-value=19 Score=31.85 Aligned_cols=44 Identities=25% Similarity=0.472 Sum_probs=31.1
Q ss_pred CccccccccCCCCCcEEc-----cCCCccChhhHHHHHHh-------cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVT-----CCGHLFCWPCLYRWLHV-------HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l-----~CGH~FC~~CI~~wl~~-------~~~~~~CPvCr~ 180 (422)
-...|.||-+-- .++ .|-..||..||..++.. ..+...|=+|.-
T Consensus 78 ~~~yC~wC~~Gg---~l~~Cdn~~C~r~FC~~CI~~nvG~~~~~~i~~~d~W~Cy~C~P 133 (159)
T 3a1b_A 78 YQSYCTICCGGR---EVLMCGNNNCCRCFCVECVDLLVGPGAAQAAIKEDPWNCYMCGH 133 (159)
T ss_dssp SBSSCTTTSCCS---EEEECSSTTTCCEEEHHHHHHHTCTTHHHHHHTSSSCCCTTTCS
T ss_pred CcceeeEecCCC---eEEeeCCCCCCCchhHHHHHHhcCHhHHHHHhccCCCEEEecCC
Confidence 456999999743 232 57789999999987654 244677888853
No 132
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=37.07 E-value=7.8 Score=30.67 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.3
Q ss_pred CccccccccCCCC--CcEEc---cCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 134 SFFDCNICLDLSR--DPVVT---CCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 134 ~~~~C~ICl~~~~--~pv~l---~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
+...|.||...-. ...++ .|.-.|+..|+..-.. ..+...||.|........
T Consensus 24 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~v-P~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 24 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI-PEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSC-CSSCCCCHHHHHHTTSCC
T ss_pred CCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCcc-CCCceECccccCccchhh
Confidence 4568999997642 22233 6778899999875332 245778999976554433
No 133
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=35.91 E-value=19 Score=29.64 Aligned_cols=30 Identities=27% Similarity=0.470 Sum_probs=18.6
Q ss_pred cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 148 PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 148 pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
+....||+.|+. .......||.|+......
T Consensus 68 ~~C~~CG~~F~~--------~~~kPsrCP~CkSe~Ie~ 97 (105)
T 2gmg_A 68 AQCRKCGFVFKA--------EINIPSRCPKCKSEWIEE 97 (105)
T ss_dssp CBBTTTCCBCCC--------CSSCCSSCSSSCCCCBCC
T ss_pred cChhhCcCeecc--------cCCCCCCCcCCCCCccCC
Confidence 345679999931 112246899998765443
No 134
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.85 E-value=13 Score=30.21 Aligned_cols=47 Identities=26% Similarity=0.474 Sum_probs=30.1
Q ss_pred CCccccccccCCCCC-c-E-EccCCCccChhhHHHHHHh-cCCCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRD-P-V-VTCCGHLFCWPCLYRWLHV-HSDAKECPVCK 179 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~-p-v-~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr 179 (422)
.++..|.||.+.-.. . + -..|+..||..|+...+.. ......||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 345689999876542 2 2 2479999999999865532 12345566653
No 135
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.73 E-value=26 Score=25.42 Aligned_cols=38 Identities=16% Similarity=0.448 Sum_probs=27.2
Q ss_pred ccccccCCCC--CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 137 DCNICLDLSR--DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 137 ~C~ICl~~~~--~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.|..|...+. +.++..-|..||..|+ .|-.|..+|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 46 (72)
T 1wyh_A 7 GCSACGETVMPGSRKLEYGGQTWHEHCF-----------LCSGCEQPLGSR 46 (72)
T ss_dssp BCSSSCCBCCSSSCEECSTTCCEETTTC-----------BCTTTCCBTTTS
T ss_pred CCccCCCccccCccEEEECccccCcccC-----------eECCCCCcCCCC
Confidence 7888888777 4566667777777773 577887777654
No 136
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=35.28 E-value=11 Score=33.91 Aligned_cols=45 Identities=18% Similarity=0.389 Sum_probs=29.7
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
.|.+|.+.-.--.--.|-..||..|+..-+.. ..+...||.|...
T Consensus 4 ~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 4 ICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred cCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 78899865321112357788999998754433 3456789999765
No 137
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.44 E-value=30 Score=25.07 Aligned_cols=39 Identities=15% Similarity=0.442 Sum_probs=26.9
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+...++..-|..||..|+ .|-.|+.+|...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 6 SGCHQCGEFIIGRVIKAMNNSWHPECF-----------RCDLCQEVLADI 44 (70)
T ss_dssp SBCSSSCCBCCSCCEEETTEEECTTTS-----------BCSSSCCBCSSS
T ss_pred CcCccCCCEecceEEEECcccccccCC-----------EeCCCCCcCCCC
Confidence 378888877776666666767777763 577787776654
No 138
>3vth_A Hydrogenase maturation factor; carbamoyltransfer, maturation of [NIFE]-hydrogenase, carbamoylphosphate, iron, HYPE; HET: APC AP2; 2.00A {Thermoanaerobacter tengcongensis} PDB: 3vti_A
Probab=33.83 E-value=11 Score=41.20 Aligned_cols=51 Identities=25% Similarity=0.528 Sum_probs=36.6
Q ss_pred CCccccccccCCCCCcE----------EccCCC--------------------ccChhhHHHHHHh-----cCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPV----------VTCCGH--------------------LFCWPCLYRWLHV-----HSDAKECPV 177 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv----------~l~CGH--------------------~FC~~CI~~wl~~-----~~~~~~CPv 177 (422)
-|.-.|+-|+..+.+|. .|.||- .+|..|..++-.. |-....||.
T Consensus 109 pD~a~C~~Cl~e~~dp~~Rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~~RRfhAqp~aC~~ 188 (761)
T 3vth_A 109 PDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFD 188 (761)
T ss_dssp CCBCCCHHHHHHHTCTTSTTTTCTTCCBTTBBCSGGGBCSSSCCGGGBGGGGSCCCHHHHHHHTCTTSTTTTCTTCCCTT
T ss_pred CCccccHHHHHHhcCCCccccCCCcccCCCCCcchhhhccCCCCCCCCccccCCCCHHHHHHhcCcccccccCCCCcCCc
Confidence 46679999998888762 356763 3599999987654 334568999
Q ss_pred CCcccc
Q 014562 178 CKGEVT 183 (422)
Q Consensus 178 Cr~~l~ 183 (422)
|.-.+.
T Consensus 189 CGP~l~ 194 (761)
T 3vth_A 189 CGPSLS 194 (761)
T ss_dssp TSCCEE
T ss_pred cCCeeE
Confidence 976553
No 139
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=33.74 E-value=13 Score=33.59 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=29.7
Q ss_pred ccccccCCCCCcE----Ec---cCCCccChhhHHHH------HHh--cCCCCCCCCCCcc
Q 014562 137 DCNICLDLSRDPV----VT---CCGHLFCWPCLYRW------LHV--HSDAKECPVCKGE 181 (422)
Q Consensus 137 ~C~ICl~~~~~pv----~l---~CGH~FC~~CI~~w------l~~--~~~~~~CPvCr~~ 181 (422)
.|+||...+.+.- ++ .|...||..|+.-- +.. ......||.|+..
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~ 63 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTER 63 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCS
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCC
Confidence 6999999886542 44 57788999997421 110 0015689999664
No 140
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=33.21 E-value=32 Score=24.84 Aligned_cols=37 Identities=19% Similarity=0.415 Sum_probs=25.1
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.|..|...+....+..-|..||..|+ .|-.|+.+|..
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 43 (70)
T 2d8z_A 7 GCVQCKKPITTGGVTYREQPWHKECF-----------VCTACRKQLSG 43 (70)
T ss_dssp BCSSSCCBCCSSEEESSSSEEETTTS-----------BCSSSCCBCTT
T ss_pred CCcccCCeeccceEEECccccCCCCC-----------ccCCCCCcCCc
Confidence 67777777766666666766776663 57777776653
No 141
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=32.75 E-value=6.3 Score=29.32 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=29.5
Q ss_pred CccccccccCCCCCcE-EccCCCccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPV-VTCCGHLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv-~l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
....|.||.+.- +-+ --.|...||..|+..-+.. ..+...||.|..
T Consensus 7 ~~~~C~vC~~~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 7 NEDECAVCRDGG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp CCCSBSSSSCCS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCccCCCCC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 445899998742 111 1267788999998754433 234667999954
No 142
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=32.35 E-value=7.3 Score=28.32 Aligned_cols=45 Identities=20% Similarity=0.488 Sum_probs=28.2
Q ss_pred ccccccccCCCCCcEE--ccCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 135 FFDCNICLDLSRDPVV--TCCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 135 ~~~C~ICl~~~~~pv~--l~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
...|.||...- .++ -.|...|+..|+..-+.. ..+...||.|...
T Consensus 5 ~~~C~vC~~~g--~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 52 (60)
T 2puy_A 5 EDFCSVCRKSG--QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQ 52 (60)
T ss_dssp CSSCTTTCCCS--SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHH
T ss_pred CCCCcCCCCCC--cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccCh
Confidence 45788888742 222 267788888888754432 2335678888554
No 143
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=31.85 E-value=25 Score=25.17 Aligned_cols=39 Identities=18% Similarity=0.307 Sum_probs=27.8
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+...++..-|..||..|+ .|-.|..++...
T Consensus 6 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 44 (66)
T 1nyp_A 6 PICGACRRPIEGRVVNAMGKQWHVEHF-----------VCAKCEKPFLGH 44 (66)
T ss_dssp CEETTTTEECCSCEECCTTSBEETTTC-----------BCTTTCCBCSSS
T ss_pred CCCcccCCEecceEEEECccccccCcC-----------EECCCCCCCCCC
Confidence 378888887776666667777777773 588888777643
No 144
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.11 E-value=28 Score=26.11 Aligned_cols=40 Identities=23% Similarity=0.496 Sum_probs=31.1
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCCc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKNI 187 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~l 187 (422)
.|..|...+...++..-|..||..|+ .|-.|+++|.....
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~~~~~ 56 (81)
T 1v6g_A 17 RCFSCDQFIEGEVVSALGKTYHPDCF-----------VCAVCRLPFPPGDR 56 (81)
T ss_dssp BCTTTCCBCCSCCEEETTEEECTTTS-----------SCSSSCCCCCSSSC
T ss_pred cCccccCEeccceEEECCceeCccCC-----------ccccCCCCCCCCCE
Confidence 79999998886667777888888874 68899988875543
No 145
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=30.93 E-value=2.4 Score=34.59 Aligned_cols=40 Identities=23% Similarity=0.463 Sum_probs=27.8
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
..||+|...+.. .=|+.+|..|-..+.. ...||.|..++.
T Consensus 33 ~~CP~Cq~eL~~----~g~~~hC~~C~~~f~~----~a~CPdC~q~Le 72 (101)
T 2jne_A 33 LHCPQCQHVLDQ----DNGHARCRSCGEFIEM----KALCPDCHQPLQ 72 (101)
T ss_dssp CBCSSSCSBEEE----ETTEEEETTTCCEEEE----EEECTTTCSBCE
T ss_pred ccCccCCCccee----cCCEEECccccchhhc----cccCcchhhHHH
Confidence 699999987753 1244458888654332 347999999874
No 146
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=30.33 E-value=49 Score=26.99 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=33.4
Q ss_pred CccccccccCCCC--CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 134 SFFDCNICLDLSR--DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 134 ~~~~C~ICl~~~~--~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
+=|.|..|...+. +.....=|..||..|....+.. .|..|.....
T Consensus 35 ~CF~C~~C~~~L~~g~~f~~~~g~~yC~~cy~~~~~~-----~~~~~~~~~~ 81 (123)
T 2l3k_A 35 ECFKCAACQKHFSVGDRYLLINSDIVCEQDIYEWTKI-----NGGSGGSGGS 81 (123)
T ss_dssp TTCBCTTTCCBCCTTCEEEECSSSEEEGGGHHHHHHH-----HTCCCCCCSC
T ss_pred ccCccccCCCCCCCCCcEEeeCCEEEcHHHhHHHhcc-----ccCCCCCCCc
Confidence 4578999999884 2356667899999999988876 5666655443
No 147
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=30.25 E-value=14 Score=31.57 Aligned_cols=48 Identities=17% Similarity=0.320 Sum_probs=28.6
Q ss_pred CccccccccCCCC--Cc---EEccCCCccChhhHHHHHH-hcCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSR--DP---VVTCCGHLFCWPCLYRWLH-VHSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~--~p---v~l~CGH~FC~~CI~~wl~-~~~~~~~CPvCr~~ 181 (422)
+...|.+|...|. .. +-..|.|.+|..|-..... .......|-+|++.
T Consensus 54 ~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~~~~~~~~~~~~W~C~vC~k~ 107 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQ 107 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSEEECCCSSSSCCEEEHHHHHH
T ss_pred CCccccccCCCcccccCCCCCCCCCCcccccccCCccCCCCCccceechhhHHH
Confidence 4469999999883 11 2357888888888542110 11123457777653
No 148
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.18 E-value=35 Score=25.22 Aligned_cols=36 Identities=17% Similarity=0.394 Sum_probs=26.6
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.|.-|...+...++..-|..||..|+ .|-.|..+|.
T Consensus 7 ~C~~C~~~I~~~~v~a~~~~wH~~CF-----------~C~~C~~~L~ 42 (73)
T 1wig_A 7 GCDSCEKYITGRVLEAGEKHYHPSCA-----------LCVRCGQMFA 42 (73)
T ss_dssp SCSSSCCCCSSCCBCCSSCCBCTTTS-----------CCSSSCCCCC
T ss_pred CcccCCCEecCeeEEeCCCCCCCCcC-----------EeCCCCCCCC
Confidence 68888887776666677777777773 5778887776
No 149
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.13 E-value=37 Score=24.71 Aligned_cols=39 Identities=13% Similarity=0.341 Sum_probs=28.4
Q ss_pred cccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|.-|...+.. .++..-|..||..|+ .|-.|..+|...
T Consensus 6 ~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~~ 48 (72)
T 1x4l_A 6 SGCAGCTNPISGLGGTKYISFEERQWHNDCF-----------NCKKCSLSLVGR 48 (72)
T ss_dssp CSBTTTTBCCCCSSSCSCEECSSCEECTTTC-----------BCSSSCCBCTTS
T ss_pred CCCcCCCccccCCCCcceEEECCcccCcccC-----------EeccCCCcCCCC
Confidence 478888888874 556667778888774 588888877643
No 150
>4g9i_A Hydrogenase maturation protein HYPF; zinc finger, ATP binding, carbamoyla transferase; 4.50A {Thermococcus kodakarensis}
Probab=29.91 E-value=15 Score=40.20 Aligned_cols=51 Identities=29% Similarity=0.593 Sum_probs=35.6
Q ss_pred CCccccccccCCCCCcE----------EccCCC--------------------ccChhhHHHHHHh-----cCCCCCCCC
Q 014562 133 GSFFDCNICLDLSRDPV----------VTCCGH--------------------LFCWPCLYRWLHV-----HSDAKECPV 177 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~pv----------~l~CGH--------------------~FC~~CI~~wl~~-----~~~~~~CPv 177 (422)
-|.-.|+-|+..+.+|. .|.||- .+|..|-.++-.. |-....||.
T Consensus 104 pD~a~C~~Cl~e~~dp~~rry~ypF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfhAqp~aC~~ 183 (772)
T 4g9i_A 104 PDIAICDDCLRELFDPTNKRYMYPFIVCTNCGPRFTIIEDLPYDRENTTMKEFPMCDFCRSEYEDPLNRRYHAEPTACPV 183 (772)
T ss_dssp CCCCCCHHHHHHHSSTTSTTTTCTTCCCTTSSCCGGGCCSSSCCGGGSGGGGSCCCHHHHHHHHCSSSTTTTCTTCCCTT
T ss_pred CchhhhHHHHHHhcCCCCCccCCccccCCCCCchhhhhhcCCCCCCCCcCCCCCCChhHHHHhCCCCCCCCcCCCCCCcc
Confidence 35668999988887762 345654 3699999988654 344568999
Q ss_pred CCcccc
Q 014562 178 CKGEVT 183 (422)
Q Consensus 178 Cr~~l~ 183 (422)
|.-.+.
T Consensus 184 CGP~l~ 189 (772)
T 4g9i_A 184 CGPSYR 189 (772)
T ss_dssp TSCCEE
T ss_pred CCceEE
Confidence 976543
No 151
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=29.80 E-value=29 Score=25.62 Aligned_cols=44 Identities=16% Similarity=0.265 Sum_probs=32.2
Q ss_pred CccccccccCCCCC-cEEccCCCccCh-hhHHHHHHhcCCCCCCCCCCccc
Q 014562 134 SFFDCNICLDLSRD-PVVTCCGHLFCW-PCLYRWLHVHSDAKECPVCKGEV 182 (422)
Q Consensus 134 ~~~~C~ICl~~~~~-pv~l~CGH~FC~-~CI~~wl~~~~~~~~CPvCr~~l 182 (422)
+=|.|..|...+.. .....=|..||. .|..+.+.. .|-.|...+
T Consensus 26 ~CF~C~~C~~~L~~~~~~~~~g~~yC~~~cy~~~f~~-----~C~~C~~~~ 71 (76)
T 1iml_A 26 PCLKCEKCGKTLTSGGHAEHEGKPYCNHPCYSAMFGP-----KGFGRGGAE 71 (76)
T ss_dssp TTCBCTTTCCBCCTTTEEEETTEEEETTTHHHHHSSC-----CCSSCCCSS
T ss_pred CCCCccccCccCCCCceECcCCeEeeCHHHHHHHhCc-----cCCCcCCce
Confidence 34789999988876 455667888999 698765544 788886543
No 152
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.21 E-value=50 Score=24.70 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=30.7
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|.-|...+...++..-|..||..|+ .|-.|..+|...
T Consensus 16 ~~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 54 (79)
T 2cor_A 16 YICQKCHAIIDEQPLIFKNDPYHPDHF-----------NCANCGKELTAD 54 (79)
T ss_dssp CBCTTTCCBCCSCCCCCSSSCCCTTTS-----------BCSSSCCBCCTT
T ss_pred CCCccCCCEecceEEEECcceeCCCCC-----------EeCCCCCccCCC
Confidence 489999998887667777888888773 688998888754
No 153
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.13 E-value=29 Score=25.62 Aligned_cols=39 Identities=23% Similarity=0.401 Sum_probs=28.0
Q ss_pred cccccccCCCC-CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSR-DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~-~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+. ...+..-|..||..|+ .|..|..+|...
T Consensus 10 ~~C~~C~~~I~~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 49 (76)
T 2cu8_A 10 SKCPKCDKTVYFAEKVSSLGKDWHKFCL-----------KCERCSKTLTPG 49 (76)
T ss_dssp CBCTTTCCBCCTTTEEEETTEEEETTTC-----------BCSSSCCBCCTT
T ss_pred CCCcCCCCEeECCeEEEECCeEeeCCCC-----------CCCCCCCccCCC
Confidence 47888888887 4455566777777773 588888887654
No 154
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.30 E-value=33 Score=24.74 Aligned_cols=36 Identities=17% Similarity=0.407 Sum_probs=21.6
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVT 183 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~ 183 (422)
.|.-|...+....+..-|..||..|+ .|-.|..+|.
T Consensus 7 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~ 42 (69)
T 2cur_A 7 GCVKCNKAITSGGITYQDQPWHADCF-----------VCVTCSKKLA 42 (69)
T ss_dssp CCSSSCCCCCTTCEEETTEEECTTTT-----------BCTTTCCBCT
T ss_pred CCcccCCEeCcceEEECccccccCcC-----------EECCCCCCCC
Confidence 56667666655445555556666553 4666766664
No 155
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=28.16 E-value=21 Score=31.18 Aligned_cols=45 Identities=20% Similarity=0.302 Sum_probs=29.1
Q ss_pred ccccccccCCCCC----c-EEccCCCccChhhHHHHHHhcCCCCCCCCCCcc
Q 014562 135 FFDCNICLDLSRD----P-VVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGE 181 (422)
Q Consensus 135 ~~~C~ICl~~~~~----p-v~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~ 181 (422)
...|.+|...|.- . +-..|.|.+|..|-. |... .....|-+|.+.
T Consensus 68 ~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~~-~~~~-~~~W~C~vC~k~ 117 (153)
T 2zet_C 68 ETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSH-AHPE-EQGWLCDPCHLA 117 (153)
T ss_dssp GTBCTTTCCBGGGCSSCCEECTTTCCEECGGGEE-CCSS-SSSCEEHHHHHH
T ss_pred CccchhhcCccccccCCCCcCCCCCchhhccccc-ccCC-CCcEeeHHHHHH
Confidence 4699999998632 1 345789999999962 3322 234567777553
No 156
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.14 E-value=42 Score=25.00 Aligned_cols=39 Identities=23% Similarity=0.495 Sum_probs=28.3
Q ss_pred cccccccCCCC--CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSR--DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~--~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+. +.++..-|..||..|+ .|-.|+.+|...
T Consensus 16 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 56 (82)
T 1x63_A 16 PKCKGCFKAIVAGDQNVEYKGTVWHKDCF-----------TCSNCKQVIGTG 56 (82)
T ss_dssp CBCSSSCCBCCSSSCEEECSSCEEETTTC-----------CCSSSCCCCTTS
T ss_pred CcCccCCcccccCceEEEECccccccccC-----------chhhCCCccCCC
Confidence 37888888887 4556666777777774 588888877654
No 157
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.90 E-value=35 Score=25.19 Aligned_cols=39 Identities=15% Similarity=0.343 Sum_probs=29.7
Q ss_pred cccccccCCCCC----cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 136 FDCNICLDLSRD----PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 136 ~~C~ICl~~~~~----pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
..|..|...+.. .++..-+..||..|+ .|-.|..+|...
T Consensus 6 ~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF-----------~C~~C~~~L~~~ 48 (76)
T 1x68_A 6 SGCVACSKPISGLTGAKFICFQDSQWHSECF-----------NCGKCSVSLVGK 48 (76)
T ss_dssp CCCTTTCCCCCTTTTCCEEEETTEEEEGGGC-----------BCTTTCCBCSSS
T ss_pred CCCccCCCcccCCCCceeEEECCcccCcccC-----------ChhhCCCcCCCC
Confidence 379999998885 566677778888874 588898887643
No 158
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.75 E-value=56 Score=23.61 Aligned_cols=34 Identities=21% Similarity=0.397 Sum_probs=22.4
Q ss_pred ccccccccCCCCCc-EEccCCCccChhhHHHHHHh
Q 014562 135 FFDCNICLDLSRDP-VVTCCGHLFCWPCLYRWLHV 168 (422)
Q Consensus 135 ~~~C~ICl~~~~~p-v~l~CGH~FC~~CI~~wl~~ 168 (422)
=|.|..|...+... ....=|..||..|..+.+..
T Consensus 33 CF~C~~C~~~L~~~~~~~~~~~~yC~~cy~~~~~~ 67 (72)
T 1x61_A 33 CFVCSTCRAQLRGQHFYAVERRAYCEGCYVATLES 67 (72)
T ss_dssp TCBCSSSCCBCTTSCEEESSSCEEEHHHHHHHHHT
T ss_pred CCcccccCCcCCcCcCEeeCCeEECHHHHHHHHcc
Confidence 36777777777543 44556777888887766643
No 159
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=27.38 E-value=8 Score=30.57 Aligned_cols=48 Identities=17% Similarity=0.390 Sum_probs=33.1
Q ss_pred ccccccccCCCC---CcEEc--cCCCccChhhHHHHHH-----hcCCCCCCCCCCccc
Q 014562 135 FFDCNICLDLSR---DPVVT--CCGHLFCWPCLYRWLH-----VHSDAKECPVCKGEV 182 (422)
Q Consensus 135 ~~~C~ICl~~~~---~pv~l--~CGH~FC~~CI~~wl~-----~~~~~~~CPvCr~~l 182 (422)
...|.||...-. +.+++ .|...||..|+..-+. ...+...|+.|....
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~ 73 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQM 73 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHH
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchh
Confidence 348999997643 33443 6888999999886543 234567899996644
No 160
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.29 E-value=38 Score=24.54 Aligned_cols=38 Identities=18% Similarity=0.421 Sum_probs=26.0
Q ss_pred ccccccCCCCC--cEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 137 DCNICLDLSRD--PVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 137 ~C~ICl~~~~~--pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.|..|...+.. .++..-|..||..|+ .|-.|..+|...
T Consensus 7 ~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~ 46 (72)
T 1x4k_A 7 GCQECKKTIMPGTRKMEYKGSSWHETCF-----------ICHRCQQPIGTK 46 (72)
T ss_dssp CBSSSCCCCCSSSCEEEETTEEEETTTT-----------CCSSSCCCCCSS
T ss_pred CCccCCCcccCCceEEEECcCeecccCC-----------cccccCCccCCC
Confidence 78888887773 355566777777663 577787776544
No 161
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.04 E-value=44 Score=24.78 Aligned_cols=38 Identities=21% Similarity=0.414 Sum_probs=26.8
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.|..|...+....+..-|..||..|+ .|-.|..+|...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 54 (80)
T 2cuq_A 17 RCARCSKTLTQGGVTYRDQPWHRECL-----------VCTGCQTPLAGQ 54 (80)
T ss_dssp CCTTTCCCCCSCCEESSSSEECTTTC-----------BCSSSCCBCTTC
T ss_pred cCCCCCCEecCcEEEECCchhhhhhC-----------CcccCCCcCCCC
Confidence 68888877766666666777777763 588888877543
No 162
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=25.81 E-value=17 Score=27.61 Aligned_cols=46 Identities=17% Similarity=0.263 Sum_probs=30.2
Q ss_pred CccccccccCCC---CCcEEc--cCCCccChhhHHHHHHhcCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLS---RDPVVT--CCGHLFCWPCLYRWLHVHSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~---~~pv~l--~CGH~FC~~CI~~wl~~~~~~~~CPvCr~ 180 (422)
+...|.||...- .+.++. .|.-.|+..|+..-.. ..+...||.|..
T Consensus 15 ~~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~v-P~g~W~C~~C~~ 65 (71)
T 2ku3_A 15 EDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYI-PEGQWLCRHCLQ 65 (71)
T ss_dssp SSCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSSC-CSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCcC-CCCCcCCccCcC
Confidence 456899998763 223332 6888899999874322 234678888854
No 163
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.05 E-value=43 Score=24.96 Aligned_cols=37 Identities=22% Similarity=0.407 Sum_probs=25.1
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
.|..|...+.+.++..-+..||..|+ .|-.|...|..
T Consensus 17 ~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (81)
T 1x6a_A 17 FCHGCSLLMTGPFMVAGEFKYHPECF-----------ACMSCKVIIED 53 (81)
T ss_dssp BCTTTCCBCCSCCBCCTTCCBCTTSC-----------BCTTTCCBCCT
T ss_pred cCccCCCCcCceEEEECCceeccccC-----------CccCCCCccCC
Confidence 67777777776555566667776663 57777777653
No 164
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=24.38 E-value=9.9 Score=27.80 Aligned_cols=43 Identities=23% Similarity=0.519 Sum_probs=27.6
Q ss_pred CccccccccCCCCCcEEcc-----CC-CccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVTC-----CG-HLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l~-----CG-H~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
+...| ||..... ..++. |. ..||..|+. +.. ..+...||.|..
T Consensus 9 e~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 9 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 34567 8988654 34443 55 579999987 333 234678988854
No 165
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=24.18 E-value=28 Score=25.87 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=21.1
Q ss_pred CCCccccccccCCCCCcE-E---c-cCCCccChhhHH
Q 014562 132 DGSFFDCNICLDLSRDPV-V---T-CCGHLFCWPCLY 163 (422)
Q Consensus 132 ~~~~~~C~ICl~~~~~pv-~---l-~CGH~FC~~CI~ 163 (422)
++....|++|...+.+.. . - .|.-.||..|+.
T Consensus 5 ~~~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 5 SDPVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp ----CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CCCcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 345569999999875432 2 2 677889999985
No 166
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.12 E-value=7.9 Score=30.87 Aligned_cols=48 Identities=21% Similarity=0.407 Sum_probs=30.9
Q ss_pred CccccccccCCCCCc-EEc--cCCCccChhhHHHHHHh-cCCCCCCCCCCcc
Q 014562 134 SFFDCNICLDLSRDP-VVT--CCGHLFCWPCLYRWLHV-HSDAKECPVCKGE 181 (422)
Q Consensus 134 ~~~~C~ICl~~~~~p-v~l--~CGH~FC~~CI~~wl~~-~~~~~~CPvCr~~ 181 (422)
+...|.||...-... +++ .|...||..|+..-+.. ..+...||.|...
T Consensus 15 ~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 445799998765322 222 68888999998743332 2346679999654
No 167
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide binding, hydrogenase maturation factor transferase; HET: ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A* 3ttf_A* 3ttd_A 3tsq_A
Probab=23.60 E-value=24 Score=38.01 Aligned_cols=49 Identities=27% Similarity=0.572 Sum_probs=33.1
Q ss_pred CccccccccCCCCCcE----------EccCCC--------------------ccChhhHHHHHHh-----cCCCCCCCCC
Q 014562 134 SFFDCNICLDLSRDPV----------VTCCGH--------------------LFCWPCLYRWLHV-----HSDAKECPVC 178 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv----------~l~CGH--------------------~FC~~CI~~wl~~-----~~~~~~CPvC 178 (422)
|.-.|+-|+..+.+|. .|.||- .+|..|..++-.. |-....||.|
T Consensus 16 D~a~C~~Cl~e~~dp~~Rry~YpF~nCt~CGPR~tii~~lPYDR~~TsM~~F~mC~~C~~EY~dp~dRRfHAqp~aCp~C 95 (657)
T 3ttc_A 16 DAATCPACLAEMNTPGERRYRYPFINCTHCGPRFTIIRAMPYDRPFTVMAAFPLCPACDKEYRDPLDRRFHAQPVACPEC 95 (657)
T ss_dssp CBCCCHHHHHHHTSTTSTTTTCTTCCBTTBBCSGGGBSSSSCSGGGBGGGGSCCCHHHHHHHHCTTSTTTTCTTCCCTTT
T ss_pred chhhhHHHHHHhcCCCCcccCCccccCcCCCchHHhcccCCCCCCCCcccCCCCChHHHHHhCCCCCCcCcCCCCcCccc
Confidence 4557888887776651 244543 3699999988654 3345689999
Q ss_pred Cccc
Q 014562 179 KGEV 182 (422)
Q Consensus 179 r~~l 182 (422)
.-.+
T Consensus 96 GP~l 99 (657)
T 3ttc_A 96 GPYL 99 (657)
T ss_dssp SCCE
T ss_pred Cccc
Confidence 6655
No 168
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.58 E-value=43 Score=24.83 Aligned_cols=38 Identities=13% Similarity=0.343 Sum_probs=25.3
Q ss_pred ccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccC
Q 014562 137 DCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVK 185 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~ 185 (422)
.|..|...+...++..-|..|+..|+ .|-.|+.+|...
T Consensus 17 ~C~~C~~~I~~~~v~a~~~~~H~~CF-----------~C~~C~~~L~~~ 54 (80)
T 1x3h_A 17 KCGGCNRPVLENYLSAMDTVWHPECF-----------VCGDCFTSFSTG 54 (80)
T ss_dssp BCTTTCCBCCSSCEEETTEEECTTTC-----------BCSSSCCBSCSS
T ss_pred ccccCCCeecceeEEECCCeEecCcC-----------ChhhCCCCCCCC
Confidence 67777777766555556666666663 577887777654
No 169
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=23.49 E-value=12 Score=32.72 Aligned_cols=48 Identities=19% Similarity=0.408 Sum_probs=30.8
Q ss_pred CCccccccccCCCCC-cEEc---cCCCccChhhHHHHHH--hcCCCCCCCCCCcc
Q 014562 133 GSFFDCNICLDLSRD-PVVT---CCGHLFCWPCLYRWLH--VHSDAKECPVCKGE 181 (422)
Q Consensus 133 ~~~~~C~ICl~~~~~-pv~l---~CGH~FC~~CI~~wl~--~~~~~~~CPvCr~~ 181 (422)
++...| ||.....+ ..++ .|...||..|+.--.. ...+...||.|+..
T Consensus 6 ~~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 6 DTKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp -CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 355688 99987642 2233 6788899999853211 12346789999764
No 170
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.38 E-value=39 Score=25.20 Aligned_cols=38 Identities=21% Similarity=0.508 Sum_probs=26.4
Q ss_pred cccccccCCCCCcEEccCCCccChhhHHHHHHhcCCCCCCCCCCccccc
Q 014562 136 FDCNICLDLSRDPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTV 184 (422)
Q Consensus 136 ~~C~ICl~~~~~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~ 184 (422)
..|..|...+.+.++..-|..|+..|+ .|..|..+|..
T Consensus 16 ~~C~~C~~~I~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~ 53 (81)
T 2dlo_A 16 EKCATCSQPILDRILRAMGKAYHPGCF-----------TCVVCHRGLDG 53 (81)
T ss_dssp CBCTTTCCBCCSCCEEETTEEECTTTC-----------BCSSSCCBCTT
T ss_pred CccccCCCeecceeEEECCccccHHhc-----------CcccCCCccCC
Confidence 377778777776666666777777663 58888877753
No 171
>3ukx_C Bimax2 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; 2.20A {Mus musculus}
Probab=23.35 E-value=52 Score=19.98 Aligned_cols=25 Identities=40% Similarity=0.612 Sum_probs=12.5
Q ss_pred ccccCCCCCcccCCCCCCCccccccCC
Q 014562 396 SRRRSDSSRVSDVDSGDSRAPRRRRLN 422 (422)
Q Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 422 (422)
+|||..--+--| ..|-.+.+||||.
T Consensus 4 rrrrrkrkrewd--ddddppkkrrrld 28 (28)
T 3ukx_C 4 RRRRRKRKREWD--DDDDPPKKRRRLD 28 (28)
T ss_dssp --CCCCCCCCCC--CSSSCCSCCCCCC
T ss_pred hHHHHHhhcccc--cCCCchhhhhccC
Confidence 344444444444 4455666777773
No 172
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=23.34 E-value=11 Score=27.51 Aligned_cols=43 Identities=23% Similarity=0.502 Sum_probs=27.8
Q ss_pred CccccccccCCCCCcEEc---c--CC-CccChhhHHHHHHh-cCCCCCCCCCCc
Q 014562 134 SFFDCNICLDLSRDPVVT---C--CG-HLFCWPCLYRWLHV-HSDAKECPVCKG 180 (422)
Q Consensus 134 ~~~~C~ICl~~~~~pv~l---~--CG-H~FC~~CI~~wl~~-~~~~~~CPvCr~ 180 (422)
+...| ||..... ..++ . |. ..||..|+. +.. ..+...||.|+.
T Consensus 8 e~~yC-~C~~~~~-g~mi~CD~~~C~~~wfH~~Cvg--l~~~p~~~w~Cp~C~~ 57 (59)
T 3c6w_A 8 EPTYC-LCHQVSY-GEMIGCDNPDCPIEWFHFACVD--LTTKPKGKWFCPRCVQ 57 (59)
T ss_dssp CCEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCcEE-ECCCCCC-CCeeEeeCCCCCCCCEecccCC--cccCCCCCEECcCccC
Confidence 34567 9988654 3444 3 65 589999987 332 234678998854
No 173
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=22.22 E-value=63 Score=23.59 Aligned_cols=40 Identities=20% Similarity=0.435 Sum_probs=28.6
Q ss_pred cccccccCCCC--CcEEccCCCccChhhHHHHHHhcCCCCCCCCCCcccccCC
Q 014562 136 FDCNICLDLSR--DPVVTCCGHLFCWPCLYRWLHVHSDAKECPVCKGEVTVKN 186 (422)
Q Consensus 136 ~~C~ICl~~~~--~pv~l~CGH~FC~~CI~~wl~~~~~~~~CPvCr~~l~~~~ 186 (422)
..|.-|...+. +.++..-|..||..|+ .|-.|..++....
T Consensus 12 ~~C~~C~~~I~~~~~~~~a~~~~~H~~CF-----------~C~~C~~~L~~~~ 53 (77)
T 1g47_A 12 ATCERCKGGFAPAEKIVNSNGELYHEQCF-----------VCAQCFQQFPEGL 53 (77)
T ss_dssp CBCSSSCCBCCSTTTCEEETTEEECTTTC-----------CCTTTCCCCGGGC
T ss_pred CCchhcCCccCCCceEEEeCccEeccccC-----------eECCCCCCCCCCC
Confidence 48899988885 4455566777777773 5888888776543
No 174
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=21.12 E-value=17 Score=33.92 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=25.4
Q ss_pred ccccccCCCCCcEEc---cCCCccChhhHHHHHHh-cCC-CCCCCCCCc
Q 014562 137 DCNICLDLSRDPVVT---CCGHLFCWPCLYRWLHV-HSD-AKECPVCKG 180 (422)
Q Consensus 137 ~C~ICl~~~~~pv~l---~CGH~FC~~CI~~wl~~-~~~-~~~CPvCr~ 180 (422)
.|.+|...-....++ .|...||..|+..-+.. ..+ ...||.|..
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577887643222222 67888999998865544 233 567999964
Done!