Query 014563
Match_columns 422
No_of_seqs 150 out of 193
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 13:50:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014563.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014563hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fp9_B Mterf domain-containing 46.1 5.6 0.00019 39.5 0.9 28 161-189 116-143 (335)
2 3m66_A Mterf3, mterf domain-co 45.4 6.2 0.00021 37.0 1.0 40 148-189 32-71 (270)
3 3m66_A Mterf3, mterf domain-co 39.4 14 0.00047 34.6 2.4 42 289-332 138-180 (270)
4 3s93_A Tudor domain-containing 22.9 1.8E+02 0.0062 23.9 6.2 60 49-110 2-71 (102)
5 3mva_O Transcription terminati 22.3 12 0.0004 36.5 -1.4 92 85-187 59-151 (343)
6 4fp9_B Mterf domain-containing 17.4 39 0.0013 33.4 1.1 81 283-371 133-227 (335)
7 3eco_A MEPR; mutlidrug efflux 16.4 2.5E+02 0.0086 22.2 5.7 70 61-135 35-109 (139)
8 2k1p_A Zinc finger RAN-binding 16.3 56 0.0019 21.6 1.3 17 398-417 1-17 (33)
9 3e98_A GAF domain of unknown f 15.2 1.4E+02 0.0046 28.2 4.2 81 91-173 34-137 (252)
10 3g3z_A NMB1585, transcriptiona 13.7 3.1E+02 0.01 21.9 5.6 57 75-135 46-107 (145)
No 1
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=46.15 E-value=5.6 Score=39.48 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=13.9
Q ss_pred HHHHHHHhcCCChhhhhcccccCCCCeEe
Q 014563 161 ALRLIRTELGLPEDFRDSILGKYGNDFRL 189 (422)
Q Consensus 161 kl~~lr~dLGLP~DF~~~ll~kyP~~Frl 189 (422)
+|..++. +||+.+-...++.++|+.+..
T Consensus 116 ~l~fL~~-lGl~~~~i~~ll~~~P~lL~~ 143 (335)
T 4fp9_B 116 RSSYLQK-LGLGEGKLKRVLYCCPEIFTM 143 (335)
T ss_dssp HHHHHHH-TTCTTTTHHHHHHHCGGGGTS
T ss_pred HHHHHHH-cCCCHHHHHHHHHhCchhhcc
Confidence 4444432 555555444555555555543
No 2
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=45.44 E-value=6.2 Score=36.95 Aligned_cols=40 Identities=18% Similarity=0.269 Sum_probs=27.9
Q ss_pred HhhcCCCCcccHHHHHHHHHhcCCChhhhhcccccCCCCeEe
Q 014563 148 LLLMSKSGTLHVHALRLIRTELGLPEDFRDSILGKYGNDFRL 189 (422)
Q Consensus 148 LLMMS~~rrLpL~kl~~lr~dLGLP~DF~~~ll~kyP~~Frl 189 (422)
||-.+.++.+ ..+++-+ .++|++.+-..+++.++|..|.-
T Consensus 32 lL~~~~~~~l-~~~l~fL-~~lG~~~~~i~~il~~~P~lL~~ 71 (270)
T 3m66_A 32 LLRLDFEKDI-KQMLLFL-KDVGIEDNQLGAFLTKNHAIFSE 71 (270)
T ss_dssp HHTCCHHHHT-HHHHHHH-HHHTCCGGGHHHHHHHCTTGGGS
T ss_pred hhccChhhhH-HHHHHHH-HHcCCCHHHHHHHHHhCChhhhC
Confidence 3444444333 3566777 47999998888899999988763
No 3
>3m66_A Mterf3, mterf domain-containing protein 1, mitochondrial; mitochondrion, DNA binding protein, transcription factor, transcription termination; 1.60A {Homo sapiens} PDB: 3opg_A 3my3_A
Probab=39.42 E-value=14 Score=34.56 Aligned_cols=42 Identities=17% Similarity=0.395 Sum_probs=32.4
Q ss_pred HHhhccchhhhhhhhHHhhhhhcCCcHH-HHHHHhhCCCcEEEEe
Q 014563 289 ELLSLTVEKRVEVERLSHFRKDFAMEVN-VRELLLKHPGIFYIST 332 (422)
Q Consensus 289 ELLSLTveKr~~v~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~ 332 (422)
.+|.+.+|+ ...++.-|.+++|++.. +..++.++|.|+..|.
T Consensus 138 ~il~~s~e~--~~~~v~~l~~~~G~s~~ei~~~v~~~P~il~~s~ 180 (270)
T 3m66_A 138 RLLTGSLEP--VKENMKVYRLELGFKHNEIQHMITRIPKMLTANK 180 (270)
T ss_dssp GGGTSCSHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCH
T ss_pred cceeechHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhheecH
Confidence 666776665 24455567889999986 8889999999998885
No 4
>3s93_A Tudor domain-containing protein 5; structural genomics consortium, SGC, transcription; 2.28A {Homo sapiens}
Probab=22.88 E-value=1.8e+02 Score=23.90 Aligned_cols=60 Identities=13% Similarity=0.193 Sum_probs=40.3
Q ss_pred HHHhhhhhHHHHHH-HHHHhcCCCCCcchHHHH-HhhhhccCCc--------chHhhHhhhCCcceEeeccC
Q 014563 49 LATKLRTLRTILNT-HRLMSTRKRGPFVSVQIM-SRWKNILGLN--------ITMGNFLHKYPHVFHLFTHP 110 (422)
Q Consensus 49 ~i~~~k~lr~v~~l-k~li~s~p~~~~l~l~~L-~k~r~~Lgl~--------~~v~~FLrkyP~iF~~~~~p 110 (422)
.+++++-|..|-++ +++|.|.|+ .+|++.| ..++...|=+ ..+.+||+--|+++.+...+
T Consensus 2 ~~~~~~~l~~vkk~irslLiS~K~--gvtl~~L~~dYr~~~G~~iP~r~lGy~sl~~fL~sipdvv~~~~~~ 71 (102)
T 3s93_A 2 MSEQERIQECLRKEIRSLLISTKD--GLSPQELEKEYLLMVGNHLPLRILGYRSTMELVLDMPDVVRVCPGA 71 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSSS--CBCHHHHHHHHHHHHSSCCCTGGGTCSSHHHHHHTCTTTEEEECCG
T ss_pred CccHHHHHHHHHHHHHHhheeCCC--CcCHHHHHHHHHHHcCCcCCchhcCcCCHHHHHHcCCCeEEEEecC
Confidence 46677777766654 457777763 5777776 4555555543 25789999999999875543
No 5
>3mva_O Transcription termination factor, mitochondrial; all alpha-helix, protein-DNA, transcription factor, terminat mitochondria; 2.20A {Homo sapiens} PDB: 3n6s_A* 3mvb_O 3n7q_A*
Probab=22.27 E-value=12 Score=36.53 Aligned_cols=92 Identities=10% Similarity=0.144 Sum_probs=0.0
Q ss_pred hccCCcc-hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHhChHHHHHHHHHHhhcCCCCcccHHHHH
Q 014563 85 NILGLNI-TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRRCESDAVIRIKKLLLMSKSGTLHVHALR 163 (422)
Q Consensus 85 ~~Lgl~~-~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~~e~~~V~rLrKLLMMS~~rrLpL~kl~ 163 (422)
+.+|++. .+.+.+.+||.++....+ .+.|...-|. ...+-.+.-..++.+--.+|+-+....--...|+
T Consensus 59 ~~~G~s~~~i~~iv~~~P~lL~~~~~--------~l~p~l~fL~--~lG~s~~~i~~il~~~P~iLl~s~~~~~l~p~v~ 128 (343)
T 3mva_O 59 LSKGASKEVIASIISRYPRAITRTPE--------NLSKRWDLWR--KIVTSDLEIVNILERSPESFFRSNNNLNLENNIK 128 (343)
T ss_dssp HHTTCCHHHHHHHHHHCGGGGGCCHH--------HHHHHHHHHT--TTSSCHHHHHHHHHHCSHHHHSCCCHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHhCcHHHhCCHH--------HHHHHHHHHH--HcCCCHHHHHHHHHHCCHHHhCCChHhhHHHHHH
Q ss_pred HHHHhcCCChhhhhcccccCCCCe
Q 014563 164 LIRTELGLPEDFRDSILGKYGNDF 187 (422)
Q Consensus 164 ~lr~dLGLP~DF~~~ll~kyP~~F 187 (422)
.++ ++|+|.+-...++.++|..|
T Consensus 129 fL~-~lGl~~~~i~~ll~~~P~il 151 (343)
T 3mva_O 129 FLY-SVGLTRKCLCRLLTNAPRTF 151 (343)
T ss_dssp HHH-HTTCCHHHHHHHHHHCGGGG
T ss_pred HHH-HhCCCHHHHHHHHHhCChhh
No 6
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=17.40 E-value=39 Score=33.38 Aligned_cols=81 Identities=11% Similarity=0.221 Sum_probs=52.6
Q ss_pred HHHHHHHHhhccchhhhhhhhHHhhhhhcCCcHH-HHHHHhhCCCcEEEEeeCCeeEEEEeeccC---------CCCcc-
Q 014563 283 AVAVVHELLSLTVEKRVEVERLSHFRKDFAMEVN-VRELLLKHPGIFYISTKGGTQTVFLREAYS---------RGCLI- 351 (422)
Q Consensus 283 aVaVlHELLSLTveKr~~v~~L~~fr~efgLp~k-~~~~l~rHPgIFYvS~kg~~~TVfLREAY~---------~g~Li- 351 (422)
.|.-.-.+|++..++ ...++..|+..+|++.+ +..|+.++|.|+..|... |+.-|+ -..++
T Consensus 133 ll~~~P~lL~~s~e~--i~~~v~~L~~~lGfS~~ev~~mv~r~P~lL~~S~e~------L~~K~efLv~~Mgl~~~eIvk 204 (335)
T 4fp9_B 133 VLYCCPEIFTMRQQD--INDTVRLLKEKCLFTVQQVTKILHSCPSVLREDLGQ------LEYKFQYAYFRMGIKHPDIVK 204 (335)
T ss_dssp HHHHCGGGGTSCHHH--HHHHHHHHHHTSCCCHHHHHHHHHHCGGGGTSCHHH------HHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHhCchhhccChHH--HHHHHHHHHHHcCCCHHHHHHHHHhCChhhhCCHHH------HHHHHHHHHHHhCCCHHHccc
Confidence 333344688888875 44566778899999876 999999999999888532 222111 01111
Q ss_pred ---CCCchHHHHHHHHHHHHhcc
Q 014563 352 ---EPNPIYVVRRKMLDLVLLGC 371 (422)
Q Consensus 352 ---ek~PL~~iR~K~~~Lm~~g~ 371 (422)
=-.++-.||.|..-|...|+
T Consensus 205 P~~l~ySLeRIkpRH~fL~~lG~ 227 (335)
T 4fp9_B 205 SEYLQYSLTKIKQRHIYLERLGR 227 (335)
T ss_dssp TTGGGSCHHHHHHHHHHHHHHTS
T ss_pred cchhhccHHHHHHHHHHHHHcCC
Confidence 12345577777777777766
No 7
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=16.40 E-value=2.5e+02 Score=22.18 Aligned_cols=70 Identities=7% Similarity=0.015 Sum_probs=38.2
Q ss_pred HHHHHHhcCCCCCcchHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccC-CCCCccccccHHHHHHHHHHHHHHH
Q 014563 61 NTHRLMSTRKRGPFVSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHP-LNKNLCCRFTPKMENLINEEVDVIR 135 (422)
Q Consensus 61 ~lk~li~s~p~~~~l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p-~~~~~~~rLT~~a~~L~~eE~~v~~ 135 (422)
.+...|...+.+ .++...| .+.+|++. +++.=|.+---| +...+| .++.-.+.||++|.+++.+-.....
T Consensus 35 ~vL~~l~~~~~~-~~t~~el---a~~l~~~~~tvs~~l~~Le~~Gli-~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 109 (139)
T 3eco_A 35 HTLGYLYAHQQD-GLTQNDI---AKALQRTGPTVSNLLRNLERKKLI-YRYVDAQDTRRKNIGLTTSGIKLVEAFTSIFD 109 (139)
T ss_dssp HHHHHHHHSTTT-CEEHHHH---HHHHTCCHHHHHHHHHHHHHTTSE-EEEECCC--CCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCC-CcCHHHH---HHHhCCCcccHHHHHHHHHHCCCE-eecCCCCCCCeeeeEECHHHHHHHHHHHHHHH
Confidence 334444444323 4565555 56788863 333334444333 323333 3455678999999998876544443
No 8
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=16.33 E-value=56 Score=21.59 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=12.2
Q ss_pred CCCCCceeeeccccCccCCC
Q 014563 398 GTRGGDWVVPIFEPLKKDNL 417 (422)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~ 417 (422)
|.+.|||.-| .|..-|.
T Consensus 1 g~~~gDW~C~---~C~~~Nf 17 (33)
T 2k1p_A 1 GSSANDWQCK---TCSNVNW 17 (33)
T ss_dssp CCSSSSCBCS---SSCCBCC
T ss_pred CCCCCCcccC---CCCCccc
Confidence 4678999998 5555554
No 9
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=15.22 E-value=1.4e+02 Score=28.20 Aligned_cols=81 Identities=16% Similarity=0.201 Sum_probs=28.2
Q ss_pred chHhhHhhhCCcceEeec---------cCCCCCccccccHHHHHHHHHHHHHHHhC---------h-HHHHHHHHH----
Q 014563 91 ITMGNFLHKYPHVFHLFT---------HPLNKNLCCRFTPKMENLINEEVDVIRRC---------E-SDAVIRIKK---- 147 (422)
Q Consensus 91 ~~v~~FLrkyP~iF~~~~---------~p~~~~~~~rLT~~a~~L~~eE~~v~~~~---------e-~~~V~rLrK---- 147 (422)
..|..||+.+|..|..+. ||.+ --+.|.+...+..+++-.-+++. + ..+..++++
T Consensus 34 ~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~~--~aVSL~erQ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~ 111 (252)
T 3e98_A 34 EQVAAYLSQHPEFFVEHDELIPELRIPHQPG--DAVSLVERQVRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLD 111 (252)
T ss_dssp -----------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhhCHHHHHhCCCCCCCC--CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999998763 3333 24677777777666654444321 1 122333333
Q ss_pred HhhcCCCCcccHHHHHHHHHhcCCCh
Q 014563 148 LLLMSKSGTLHVHALRLIRTELGLPE 173 (422)
Q Consensus 148 LLMMS~~rrLpL~kl~~lr~dLGLP~ 173 (422)
||.-..-..++-.-...++.+||+|.
T Consensus 112 LL~a~sl~~l~~~L~~~l~~~F~l~~ 137 (252)
T 3e98_A 112 LLDATSLEDVVSTVEDSLRHEFQVPY 137 (252)
T ss_dssp HHHCCSHHHHHHHHHHHHHHTSCCSE
T ss_pred HhcCCCHHHHHHHHHHHHHHHCCCCe
Confidence 33332223333222356777888875
No 10
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=13.74 E-value=3.1e+02 Score=21.91 Aligned_cols=57 Identities=5% Similarity=-0.109 Sum_probs=33.0
Q ss_pred chHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccC-CCCCccccccHHHHHHHHHHHHHHH
Q 014563 75 VSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHP-LNKNLCCRFTPKMENLINEEVDVIR 135 (422)
Q Consensus 75 l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p-~~~~~~~rLT~~a~~L~~eE~~v~~ 135 (422)
++...| .+.+|++. +++.=|.+---|=.. .+| .++.-++.||++|.+++.+-.....
T Consensus 46 ~t~~eL---a~~l~~~~~tvs~~l~~Le~~Glv~r~-~~~~D~R~~~~~LT~~G~~~~~~~~~~~~ 107 (145)
T 3g3z_A 46 RTQKHI---GEKWSLPKQTVSGVCKTLAGQGLIEWQ-EGEQDRRKRLLSLTETGKAYAAPLTESAQ 107 (145)
T ss_dssp BCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEC-CCSSCGGGSCEEECHHHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEeec-cCCCCCceeeeeEChhHHHHHHHHHHHHH
Confidence 565555 46788863 333334444333322 233 3455678999999998766554444
Done!