BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014564
(422 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 452 bits (1164), Expect = e-127, Method: Compositional matrix adjust.
Identities = 231/439 (52%), Positives = 309/439 (70%), Gaps = 27/439 (6%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+R+V +ILGGGAGTRLYPLTK+RAKPAVP+G YRLID+P+SNC+NS I+K+Y+LTQ+N
Sbjct: 18 SRSVLGIILGGGAGTRLYPLTKKRAKPAVPLGANYRLIDIPVSNCLNSNISKIYVLTQFN 77
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
SASLNRHL+RAY G +G VEVLAA Q+P WFQGTADAVRQ+ WLFE+
Sbjct: 78 SASLNRHLSRAYASNMGGYKNEGFVEVLAAQQSP--ENPDWFQGTADAVRQYLWLFEE-- 133
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD----------------- 168
+ + LIL+GDHLYRMDY F+Q HR++ ADIT++ LPMD+
Sbjct: 134 -HTVLEYLILAGDHLYRMDYEKFIQAHRETDADITVAALPMDEKRATAFGLMKIDEEGRI 192
Query: 169 ---SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTAN 225
+EKP+G+ L+AM VDTT+LGL + A+E P+IASMG+Y+ K+++LNLLR +FP AN
Sbjct: 193 IEFAEKPQGEQLQAMKVDTTILGLDDKRAKEMPFIASMGIYVISKDVMLNLLRDKFPGAN 252
Query: 226 DFGSEIIP-ASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP-PMFSFYDATKPIY 283
DFGSE+IP A++ ++AYL++ YWEDIGTI +F+ ANL +T P P FSFYD + PIY
Sbjct: 253 DFGSEVIPGATSLGMRVQAYLYDGYWEDIGTIEAFYNANLGITKKPVPDFSFYDRSAPIY 312
Query: 284 TSRRNLPPXXXXXXXXXXXXXXHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY 343
T R LPP G I + I HSVVG+RS I+ ++D++++GAD+Y
Sbjct: 313 TQPRYLPPSKMLDADVTDSVIGEGCVIKNCKIHHSVVGLRSCISEGAIIEDSLLMGADYY 372
Query: 344 ETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYI 403
ETDA+ L A+G VP+GIG+N IK IIDKNARIG NV I N + +QEA R +G++I
Sbjct: 373 ETDADRKLLAAKGSVPIGIGKNCHIKRAIIDKNARIGDNVKIINKDNVQEAARETDGYFI 432
Query: 404 RSGVTVILKNSVITDGFVI 422
+SG+ ++K+++I G +I
Sbjct: 433 KSGIVTVIKDALIPSGIII 451
>pdb|3BRK|X Chain X, Crystal Structure Of Adp-Glucose Pyrophosphorylase From
Agrobacterium Tumefaciens
Length = 420
Score = 163 bits (412), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 109/307 (35%), Positives = 161/307 (52%), Gaps = 29/307 (9%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
AR A +L GG G+RL LT +RAKPAV GG R+ID +SN +NSGI ++ + TQY
Sbjct: 10 ARDAXAYVLAGGRGSRLKELTDRRAKPAVYFGGKARIIDFALSNALNSGIRRIGVATQYK 69
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
+ SL RHL R +++ + ++L A+Q E +W++GTADAV Q + E
Sbjct: 70 AHSLIRHLQRGWDFFRPER--NESFDILPASQRVSET--QWYEGTADAVYQNIDIIE--- 122
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT 185
E +IL+GDH+Y+ DY +Q H SGAD+TI CL + E G + +
Sbjct: 123 PYAPEYXVILAGDHIYKXDYEYXLQQHVDSGADVTIGCLEVPRXEA-TGFGVXHVNEKDE 181
Query: 186 VLGLSKQEAE-------EKPYIASMGVYLFKKEILLNLLRWRF--PTAN-DFGSEIIPAS 235
++ ++ A+ E +AS G+Y+F + L +R PT++ DFG +IIP
Sbjct: 182 IIDFIEKPADPPGIPGNEGFALASXGIYVFHTKFLXEAVRRDAADPTSSRDFGKDIIPYI 241
Query: 236 ANEQFLKAYLFND-----------YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 284
A+ F D YW D+GTI ++++AN+ LT P YD + PI+T
Sbjct: 242 VEHGKAVAHRFADSCVRSDFEHEPYWRDVGTIDAYWQANIDLTDVVPDLDIYDKSWPIWT 301
Query: 285 SRRNLPP 291
PP
Sbjct: 302 YAEITPP 308
>pdb|3HL3|A Chain A, 2.76 Angstrom Crystal Structure Of A Putative
Glucose-1-Phosphate Thymidylyltransferase From Bacillus
Anthracis In Complex With A Sucrose.
pdb|4ECM|A Chain A, 2.3 Angstrom Crystal Structure Of A Glucose-1-Phosphate
Thymidylyltransferase From Bacillus Anthracis In Complex
With Thymidine-5-Diphospho-Alpha-D-Glucose And
Pyrophosphate
Length = 269
Score = 48.1 bits (113), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 61/265 (23%), Positives = 115/265 (43%), Gaps = 39/265 (14%)
Query: 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN 65
+ + +IL GG G+RLYP+TK K +P+ G Y +I + I + I+T
Sbjct: 22 SNAMKGIILAGGTGSRLYPITKVTNKHLLPV-GRYPMIYHAVYKLKQCDITDIMIITG-- 78
Query: 66 SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPR 125
H+ GD V L + Q G + Q A + Q L ED
Sbjct: 79 ----KEHM------------GD-VVSFLGSGQEFGVSFTYRVQDKAGGIAQALGLCEDFV 121
Query: 126 NKVIEDVLILSGDHLYRMDYMDFVQ--NHRQSGADITISCLPMDDSEKPKGKDLKAMAVD 183
+ ++++ GD+++ D +V+ +++ GA + + + DD E+ +++ +
Sbjct: 122 GN--DRMVVILGDNIFSDDIRPYVEEFTNQKEGAKVLLQSV--DDPERFGVANIQ----N 173
Query: 184 TTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLK- 242
++ + ++ E K A G+YL+ ++ + ++ P+A E+ N +LK
Sbjct: 174 RKIIEIEEKPKEPKSSYAVTGIYLYDSKV-FSYIKELKPSAR---GELEITDINNWYLKR 229
Query: 243 -AYLFND---YWEDIGTIRSFFEAN 263
+N+ +W D GT S AN
Sbjct: 230 GVLTYNEMSGWWTDAGTHVSLQRAN 254
>pdb|1LVW|A Chain A, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|B Chain B, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|C Chain C, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
pdb|1LVW|D Chain D, Crystal Structure Of Glucose-1-phosphate
Thymidylyltransferase, Rmla, Complex With Dtdp
Length = 295
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
+ ++L GG+GTRLYP+T+ +K +PI +I P+S + +GI + I++
Sbjct: 4 MKGIVLAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSVLMLAGIRDILIISTPRDLP 62
Query: 69 LNRHLARAYNYGSGVTFG 86
L R L G G FG
Sbjct: 63 LYRDLL-----GDGSQFG 75
>pdb|1H5S|A Chain A, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|1H5R|B Chain B, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|B Chain B, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|B Chain B, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|1H5T|A Chain A, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5R|A Chain A, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|C Chain C, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5R|D Chain D, Thymidylyltransferase Complexed With Thimidine And
Glucose- 1-Phospate
pdb|1H5T|C Chain C, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5T|D Chain D, Thymidylyltransferase Complexed With
Thymidylyldiphosphate- Glucose
pdb|1H5S|C Chain C, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 45/106 (42%), Gaps = 23/106 (21%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-------- 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRF 64
Query: 63 --------------QYNSASLNRHLARAYNYGSGVTFGDGCVEVLA 94
QY LA+A+ G GD C VL
Sbjct: 65 QQLLGDGSQWGLNLQYKVQPSPDGLAQAFIIGEEFIGGDDCALVLG 110
>pdb|3PKQ|A Chain A, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|B Chain B, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|C Chain C, Q83d Variant Of S. Enterica Rmla With Dgtp
pdb|3PKQ|D Chain D, Q83d Variant Of S. Enterica Rmla With Dgtp
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|3PKP|A Chain A, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|B Chain B, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|C Chain C, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|D Chain D, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|I Chain I, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|J Chain J, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|K Chain K, Q83s Variant Of S. Enterica Rmla With Datp
pdb|3PKP|L Chain L, Q83s Variant Of S. Enterica Rmla With Datp
Length = 292
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1TZF|A Chain A, X-Ray Crystal Structure Of Alpha-D-Glucose-1-Phosphate
Cytidylyltransferase From Salmonella Typhi
pdb|1WVC|A Chain A, Alpha-D-Glucose-1-Phosphate Cytidylyltransferase
Complexed With Ctp
Length = 259
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AVIL GG GTRL T + KP V IGG L + M GI I Y +
Sbjct: 5 AVILAGGLGTRLSEETIVKPKPMVEIGGKPILWHI-MKMYSVHGIKDFIICCGYKGYVIK 63
Query: 71 RHLARAYNYGSGVTF 85
+ A + + S VTF
Sbjct: 64 EYFANYFLHMSDVTF 78
>pdb|1MP5|A Chain A, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|B Chain B, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|C Chain C, Y177f Variant Of S. Enterica Rmla
pdb|1MP5|D Chain D, Y177f Variant Of S. Enterica Rmla
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1IIM|A Chain A, Thymidylyltransferase Complexed With Ttp
pdb|1IIM|B Chain B, Thymidylyltransferase Complexed With Ttp
pdb|1IIN|A Chain A, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|B Chain B, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|C Chain C, Thymidylyltransferase Complexed With Udp-Glucose
pdb|1IIN|D Chain D, Thymidylyltransferase Complexed With Udp-Glucose
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1MP4|A Chain A, W224h Variant Of S. Enterica Rmla
pdb|1MP4|B Chain B, W224h Variant Of S. Enterica Rmla
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1MP3|A Chain A, L89t Variant Of S. Enterica Rmla
pdb|1MP3|B Chain B, L89t Variant Of S. Enterica Rmla
Length = 292
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+T +IL GG+GTRLYP+T ++ +PI +I P+S + +GI + I++
Sbjct: 2 KTRKGIILAGGSGTRLYPVTMAVSQQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|1H5S|D Chain D, Thymidylyltransferase Complexed With Tmp
Length = 293
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+IL GG+GTRLYP+T +K +PI +I P+S + +GI + I++
Sbjct: 6 GIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIIS 56
>pdb|2E3D|A Chain A, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|B Chain B, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|C Chain C, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
pdb|2E3D|D Chain D, Crystal Structure Of E. Coli Glucose-1-Phosphate
Uridylyltransferase
Length = 302
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 11/83 (13%)
Query: 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPM-----SNCINSGI 55
M + + AVI G GTR+ P TK K +P L+D P+ + CI +GI
Sbjct: 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLP------LVDKPLIQYVVNECIAAGI 54
Query: 56 NKVYILTQYNSASLNRHLARAYN 78
++ ++T + S+ H ++
Sbjct: 55 TEIVLVTHSSKNSIENHFDTSFE 77
>pdb|1JYK|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 37.4 bits (85), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQ 84
Query: 69 LNRHLARAYNYGSGVTFGD 87
+ + YG + F D
Sbjct: 85 FDYLKEK---YGVRLVFND 100
>pdb|1JYL|A Chain A, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|B Chain B, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|C Chain C, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
pdb|1JYL|D Chain D, Catalytic Mechanism Of Ctp:phosphocholine
Cytidylytransferase From Streptococcus Pneumoniae (Licc)
Length = 254
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSAS 68
V A+IL G GTRL PLT+ K V + LI+ + GIN + I+ Y
Sbjct: 26 VKAIILAAGLGTRLRPLTENTPKALVQVNQK-PLIEYQIEFLKEKGINDIIIIVGYLKEQ 84
Query: 69 LNRHLARAYNYGSGVTFGD 87
+ + YG + F D
Sbjct: 85 FDYLKEK---YGVRLVFND 100
>pdb|1MC3|A Chain A, Crystal Structure Of Rffh
pdb|1MC3|B Chain B, Crystal Structure Of Rffh
Length = 296
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT 62
+IL GG+GTRL+P+T+ +K +PI I P+S +GI ++ I+T
Sbjct: 6 GIILAGGSGTRLHPITRGVSKQLLPIYDK-PXIYYPLSVLXLAGIREILIIT 56
>pdb|1FXO|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FXO|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tmp Complex.
pdb|1FZW|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1FZW|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Apo Enzyme.
pdb|1G0R|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G0R|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). ThymidineGLUCOSE- 1-Phosphate Complex.
pdb|1G1L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G1L|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-Glucose Complex.
pdb|1G2V|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G2V|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Ttp Complex.
pdb|1G3L|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|1G3L|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Tdp-L-Rhamnose Complex.
pdb|4ASJ|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASJ|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ASY|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 293
Score = 36.6 bits (83), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 63
Query: 70 NRHLARAYNYGSGVTF 85
+ L N+G + +
Sbjct: 64 QQLLGDGSNWGLDLQY 79
>pdb|4B2X|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B2X|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B3U|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B42|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4G|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B4M|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4B5B|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLK|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|3ZLL|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 303
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 15 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 73
Query: 70 NRHLARAYNYGSGVTF 85
+ L N+G + +
Sbjct: 74 QQLLGDGSNWGLDLQY 89
>pdb|4ARW|A Chain A, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|B Chain B, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|C Chain C, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
pdb|4ARW|D Chain D, Pseudomonas Aeruginosa Rmla In Complex With Allosteric
Inhibitor
Length = 302
Score = 36.6 bits (83), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ +I P+S + +GI ++ I+ T ++
Sbjct: 14 GIILAGGSGTRLHPATLAISKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPQDTPRF 72
Query: 70 NRHLARAYNYGSGVTF 85
+ L N+G + +
Sbjct: 73 QQLLGDGSNWGLDLQY 88
>pdb|1G23|A Chain A, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|B Chain B, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|C Chain C, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|D Chain D, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|E Chain E, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|F Chain F, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|G Chain G, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex.
pdb|1G23|H Chain H, The Structural Basis Of The Catalytic Mechanism And
Regulation Of Glucose-1-Phosphate Thymidylyltransferase
(Rmla). Glucose-1-Phosphate Complex
Length = 293
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYIL-TQYNSASL 69
+IL GG+GTRL+P T +K +P+ I P+S +GI ++ I+ T ++
Sbjct: 5 GIILAGGSGTRLHPATLAISKQLLPVYDK-PXIYYPLSTLXLAGIREILIISTPQDTPRF 63
Query: 70 NRHLARAYNYGSGVTF 85
+ L N+G + +
Sbjct: 64 QQLLGDGSNWGLDLQY 79
>pdb|3JUJ|A Chain A, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|B Chain B, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|C Chain C, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUJ|D Chain D, The Crystal Structure Of Apo- Udp-Glucose
Pyrophosphorylase
pdb|3JUK|A Chain A, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|B Chain B, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|C Chain C, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
pdb|3JUK|D Chain D, The Crystal Structure Of Udp-Glucose Pyrophosphorylase
Compl Udp-Glucose
Length = 281
Score = 31.6 bits (70), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 104/263 (39%), Gaps = 16/263 (6%)
Query: 15 GGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLA 74
G GTR P+TK K +PI LI + + +G + I+T N SL +
Sbjct: 9 AAGYGTRFLPITKTIPKEMLPIVDK-PLIQYAVEEAMEAGCEVMAIVTGRNKRSLEDYFD 67
Query: 75 RAYNYGSGVTFGDGCVEVLAATQTPGEAG------KRWFQGTADAVRQFHWLF-EDPRNK 127
+Y + G L + + E ++ +G A+ L +P
Sbjct: 68 TSYEIEHQIQ-GTNKENALKSIRNIIEKCCFSYVRQKQMKGLGHAILTGEALIGNEPFAV 126
Query: 128 VIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSEK---PKGKDLKAMAVDT 184
++ D L +S DH + M + Q + I + +++ K +G+ L+ +
Sbjct: 127 ILADDLCISHDHPSVLKQMTSLYQKYQCSI-VAIEEVALEEVSKYGVIRGEWLEEGVYEI 185
Query: 185 TVLGLSKQEAEEKPY-IASMGVYLFKKEILLNLLRWRFPTANDFG-SEIIPASANEQFLK 242
+ + K E+ P +A +G Y+ +I L + N+ ++ + A + +
Sbjct: 186 KDM-VEKPNQEDAPSNLAVIGRYILTPDIFEILSETKPGKNNEIQITDALRTQAKRKRII 244
Query: 243 AYLFNDYWEDIGTIRSFFEANLA 265
AY F D G++ + EA+ A
Sbjct: 245 AYQFKGKRYDCGSVEGYIEASNA 267
>pdb|2UX8|A Chain A, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|B Chain B, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|C Chain C, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|D Chain D, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|E Chain E, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|F Chain F, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|G Chain G, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate.
pdb|2UX8|H Chain H, Crystal Structure Of Sphingomonas Elodea Atcc 31461
Glucose- 1-phosphate Uridylyltransferase In Complex With
Glucose- 1-phosphate
Length = 297
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
AV G GTR P TK K +P+ LI + + +GI ++ +T ++L
Sbjct: 17 AVFPVAGLGTRFLPATKAMPKEMLPVVD-RPLIQYAVDEAVEAGIEQMIFVTGRGKSALE 75
Query: 71 RHLARAYNYGSGVTFGDGCVEVLAATQ-TPG 100
H AY + + ++VL T+ PG
Sbjct: 76 DHFDIAYELEATMAARGKSLDVLDGTRLKPG 106
>pdb|3RSB|A Chain A, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|B Chain B, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|C Chain C, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
pdb|3RSB|D Chain D, Structure Of The Archaeal Gtp:adocbi-P
Guanylyltransferase (Coby) From Methanocaldococcus
Jannaschii
Length = 196
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 42/87 (48%), Gaps = 9/87 (10%)
Query: 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLN 70
A+I GG GTR KP + + G LID +S + S +N ++I T N+
Sbjct: 3 ALIXAGGKGTR----XGGVEKPLIKLCGRC-LIDYVVSPLLKSKVNNIFIATSPNTPKTK 57
Query: 71 RHLARAY-NYGSGV---TFGDGCVEVL 93
++ AY +Y + V T G G +E L
Sbjct: 58 EYINSAYKDYKNIVVIDTSGKGYIEDL 84
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase
From Paenibacillus Polymyxa
Length = 419
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 144 DYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDT 184
DY +Q + + D+T +CL M DS L + VDT
Sbjct: 304 DYNRLIQKFKDADLDLTFTCLEMSDSGTAPNYSLPSTLVDT 344
>pdb|2CU2|A Chain A, Crystal Structure Of Mannose-1-Phosphate
Geranyltransferase From Thermus Thermophilus Hb8
Length = 337
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Query: 11 AVILGGGAGTRLYPLTKQ-RAKPAVPI 36
A+++ GG G RL+PL+++ R KP +P+
Sbjct: 5 ALVMAGGRGERLWPLSREDRPKPFLPL 31
>pdb|2FQH|A Chain A, Nmr Structure Of Hypothetical Protein Ta0938 From
Termoplasma Acidophilum
Length = 109
Score = 30.4 bits (67), Expect = 1.8, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 7/51 (13%)
Query: 368 IKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 418
+ E ID N ++G+NV++ N E DR FY++ G ++K ITD
Sbjct: 66 VDELHIDGNYQLGRNVLLKNGE-----DRLR--FYVKFGPGAVIKEFKITD 109
>pdb|2GGO|A Chain A, Crystal Structure Of Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
pdb|2GGQ|A Chain A, Complex Of Hypothetical Glucose-1-Phosphate
Thymidylyltransferase From Sulfolobus Tokodaii
Length = 401
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 9 VAAVILGGGAGTRLYPLTKQRAKPAVPI 36
+ A IL G+G RL P+T R K VPI
Sbjct: 1 MKAFILAAGSGERLEPITHTRPKAFVPI 28
>pdb|2PA4|A Chain A, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|B Chain B, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|C Chain C, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
pdb|2PA4|D Chain D, Crystal Structure Of Udp-Glucose Pyrophosphorylase From
Corynebacteria Glutamicum In Complex With Magnesium And
Udp-Glucose
Length = 323
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 11/70 (15%)
Query: 12 VILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-----GINKVYILTQYNS 66
V+ G GTR P TK K +P+ +D P I + G ++ I+T N
Sbjct: 16 VVPAAGLGTRFLPATKTVPKELLPV------VDTPGIELIAAEAAELGATRLAIITAPNK 69
Query: 67 ASLNRHLARA 76
A + H R+
Sbjct: 70 AGVLAHFERS 79
>pdb|1HM9|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM9|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A And Udp-N- Acetylglucosamine
pdb|1HM8|A Chain A, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM8|B Chain B, Crystal Structure Of S.Pneumoniae
N-Acetylglucosamine-1-Phosphate Uridyltransferase, Glmu,
Bound To Acetyl Coenzyme A
pdb|1HM0|A Chain A, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
pdb|1HM0|B Chain B, Crystal Structure Of S.Pneumoniae N-Acetylglucosamine
1-Phosphate Uridyltransferase, Glmu
Length = 468
Score = 28.1 bits (61), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 23/95 (24%)
Query: 307 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVASLLAEGRVPVG 361
G+ IT+S IE S V + H++ LGA +F E
Sbjct: 315 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGS------------S 362
Query: 362 IGENTK------IKECIIDKNARIGKNVIIANSEG 390
IGENTK I C + N G I N +G
Sbjct: 363 IGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDG 397
>pdb|4AAW|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
pdb|4AC3|A Chain A, S.Pneumoniae Glmu In Complex With An Antibacterial
Inhibitor
Length = 459
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 35/95 (36%), Gaps = 23/95 (24%)
Query: 307 GSFITSSFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVASLLAEGRVPVG 361
G+ IT+S IE S V + H++ LGA +F E
Sbjct: 306 GAVITNSMIEESSVADGVTVGPYAHIRPNSSLGAQVHIGNFVEVKGS------------S 353
Query: 362 IGENTK------IKECIIDKNARIGKNVIIANSEG 390
IGENTK I C + N G I N +G
Sbjct: 354 IGENTKAGHLTYIGNCEVGSNVNFGAGTITVNYDG 388
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,054,605
Number of Sequences: 62578
Number of extensions: 499957
Number of successful extensions: 1216
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1177
Number of HSP's gapped (non-prelim): 36
length of query: 422
length of database: 14,973,337
effective HSP length: 101
effective length of query: 321
effective length of database: 8,652,959
effective search space: 2777599839
effective search space used: 2777599839
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)