Query 014564
Match_columns 422
No_of_seqs 191 out of 2339
Neff 9.3
Searched_HMMs 46136
Date Fri Mar 29 06:22:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014564.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014564hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0448 GlgC ADP-glucose pyrop 100.0 1E-60 2.2E-65 443.5 35.5 383 7-421 4-392 (393)
2 PLN02241 glucose-1-phosphate a 100.0 1E-58 2.2E-63 459.6 42.9 414 6-422 1-436 (436)
3 PRK02862 glgC glucose-1-phosph 100.0 1.7E-55 3.6E-60 435.4 42.2 407 6-422 1-429 (429)
4 KOG1322 GDP-mannose pyrophosph 100.0 6.8E-56 1.5E-60 396.2 30.1 354 5-416 6-370 (371)
5 PRK05293 glgC glucose-1-phosph 100.0 1.2E-52 2.7E-57 411.1 39.1 374 6-422 1-379 (380)
6 PRK00844 glgC glucose-1-phosph 100.0 1.4E-51 3E-56 405.7 39.7 378 5-416 2-407 (407)
7 PRK00725 glgC glucose-1-phosph 100.0 1.4E-50 3E-55 399.9 39.9 382 4-417 10-420 (425)
8 COG1208 GCD1 Nucleoside-diphos 100.0 1.1E-50 2.3E-55 389.7 35.4 349 8-421 1-356 (358)
9 TIGR02092 glgD glucose-1-phosp 100.0 6.2E-48 1.3E-52 376.2 36.5 350 8-388 2-356 (369)
10 TIGR02091 glgC glucose-1-phosp 100.0 3.4E-47 7.3E-52 370.3 37.2 349 11-387 1-361 (361)
11 COG1207 GlmU N-acetylglucosami 100.0 6.9E-48 1.5E-52 357.3 26.0 379 7-422 1-430 (460)
12 TIGR01208 rmlA_long glucose-1- 100.0 2.8E-44 6E-49 348.5 34.0 234 10-270 1-238 (353)
13 PRK14355 glmU bifunctional N-a 100.0 1.2E-42 2.5E-47 348.4 33.0 386 6-422 1-430 (459)
14 PRK14352 glmU bifunctional N-a 100.0 4.7E-42 1E-46 345.7 32.8 385 6-422 2-432 (482)
15 PRK14359 glmU bifunctional N-a 100.0 1.2E-41 2.6E-46 339.1 31.9 371 7-422 1-400 (430)
16 PRK14358 glmU bifunctional N-a 100.0 1.2E-41 2.6E-46 341.4 31.1 382 4-422 3-432 (481)
17 TIGR01173 glmU UDP-N-acetylglu 100.0 3.5E-41 7.6E-46 338.0 30.2 376 9-422 1-423 (451)
18 PRK09451 glmU bifunctional N-a 100.0 5.5E-41 1.2E-45 336.2 29.6 377 6-422 3-427 (456)
19 KOG1460 GDP-mannose pyrophosph 100.0 1.2E-41 2.5E-46 299.8 19.0 331 7-388 1-358 (407)
20 PRK14353 glmU bifunctional N-a 100.0 2.4E-39 5.2E-44 323.9 33.3 377 6-422 3-413 (446)
21 KOG1462 Translation initiation 100.0 1.4E-40 3.1E-45 303.4 22.0 330 6-387 7-402 (433)
22 KOG1461 Translation initiation 100.0 9.8E-40 2.1E-44 314.6 28.8 361 7-422 23-423 (673)
23 PRK14357 glmU bifunctional N-a 100.0 3.7E-39 8E-44 322.7 32.8 371 9-422 1-416 (448)
24 PRK14354 glmU bifunctional N-a 100.0 1.7E-39 3.8E-44 326.1 30.4 380 7-422 1-426 (458)
25 PRK14356 glmU bifunctional N-a 100.0 2E-39 4.3E-44 325.4 30.4 378 8-422 5-431 (456)
26 PRK14360 glmU bifunctional N-a 100.0 3.1E-38 6.8E-43 316.3 31.0 377 9-422 2-423 (450)
27 COG1209 RfbA dTDP-glucose pyro 100.0 5E-39 1.1E-43 283.1 20.4 233 9-268 1-237 (286)
28 TIGR01105 galF UTP-glucose-1-p 100.0 2.9E-36 6.4E-41 282.2 24.2 240 6-266 1-276 (297)
29 cd06425 M1P_guanylylT_B_like_N 100.0 2.6E-35 5.5E-40 269.4 24.9 232 9-267 1-233 (233)
30 PRK10122 GalU regulator GalF; 100.0 2E-35 4.4E-40 277.4 24.7 242 6-268 1-279 (297)
31 PF00483 NTP_transferase: Nucl 100.0 2.7E-35 5.9E-40 272.0 24.2 238 10-268 1-247 (248)
32 PRK15480 glucose-1-phosphate t 100.0 2.4E-34 5.2E-39 268.7 25.7 235 6-267 1-241 (292)
33 cd06428 M1P_guanylylT_A_like_N 100.0 4E-34 8.6E-39 265.3 24.0 235 11-266 1-257 (257)
34 TIGR01207 rmlA glucose-1-phosp 100.0 1.3E-33 2.8E-38 263.5 24.4 231 10-267 1-237 (286)
35 cd02538 G1P_TT_short G1P_TT_sh 100.0 1.5E-33 3.3E-38 258.8 24.4 231 9-266 1-237 (240)
36 TIGR02623 G1P_cyt_trans glucos 100.0 4.4E-33 9.5E-38 257.2 24.4 233 10-269 1-247 (254)
37 PRK13389 UTP--glucose-1-phosph 100.0 1.3E-32 2.8E-37 258.8 25.3 248 1-267 1-280 (302)
38 cd04189 G1P_TT_long G1P_TT_lon 100.0 3.9E-32 8.4E-37 249.0 25.3 232 9-268 1-235 (236)
39 cd02541 UGPase_prokaryotic Pro 100.0 5.9E-32 1.3E-36 252.3 24.7 240 9-267 1-265 (267)
40 cd06422 NTP_transferase_like_1 100.0 1.9E-32 4.2E-37 248.4 20.7 219 10-262 1-221 (221)
41 cd02524 G1P_cytidylyltransfera 100.0 9E-32 1.9E-36 248.8 23.5 242 11-268 1-247 (253)
42 TIGR01099 galU UTP-glucose-1-p 100.0 1.7E-31 3.6E-36 248.3 22.8 238 9-262 1-260 (260)
43 cd06915 NTP_transferase_WcbM_l 100.0 3.3E-31 7.1E-36 240.6 21.9 222 11-262 1-222 (223)
44 cd04181 NTP_transferase NTP_tr 100.0 9.4E-31 2E-35 236.6 22.6 217 11-254 1-217 (217)
45 cd06426 NTP_transferase_like_2 100.0 4.5E-30 9.7E-35 232.8 23.4 219 11-263 1-220 (220)
46 COG1210 GalU UDP-glucose pyrop 100.0 3.2E-30 6.9E-35 227.6 16.9 247 6-269 2-272 (291)
47 cd02508 ADP_Glucose_PP ADP-glu 100.0 7E-29 1.5E-33 221.3 20.1 199 11-253 1-200 (200)
48 cd04197 eIF-2B_epsilon_N The N 100.0 1.6E-28 3.4E-33 221.8 17.0 186 9-213 1-217 (217)
49 cd02523 PC_cytidylyltransferas 100.0 1.1E-27 2.5E-32 218.3 19.1 220 11-263 1-229 (229)
50 cd04183 GT2_BcE_like GT2_BcbE_ 100.0 2.5E-27 5.4E-32 216.4 20.4 221 11-259 1-230 (231)
51 cd02507 eIF-2B_gamma_N_like Th 99.9 2.5E-25 5.5E-30 200.5 15.4 187 9-213 1-216 (216)
52 cd02509 GDP-M1P_Guanylyltransf 99.9 3.7E-25 7.9E-30 206.2 16.4 225 9-258 1-273 (274)
53 cd02540 GT2_GlmU_N_bac N-termi 99.9 1.4E-24 3E-29 198.0 19.7 217 11-259 1-229 (229)
54 cd04198 eIF-2B_gamma_N The N-t 99.9 8.8E-25 1.9E-29 196.8 15.7 184 9-213 1-214 (214)
55 COG1213 Predicted sugar nucleo 99.9 2.6E-24 5.5E-29 187.0 15.8 224 6-268 1-230 (239)
56 TIGR01479 GMP_PMI mannose-1-ph 99.9 6E-23 1.3E-27 204.5 21.0 232 9-263 1-281 (468)
57 PRK05450 3-deoxy-manno-octulos 99.9 3.4E-22 7.4E-27 184.1 20.5 227 7-266 1-244 (245)
58 cd02517 CMP-KDO-Synthetase CMP 99.9 1E-21 2.2E-26 180.3 20.5 221 9-264 2-238 (239)
59 PRK13368 3-deoxy-manno-octulos 99.9 7.8E-21 1.7E-25 174.3 19.6 221 8-265 2-237 (238)
60 COG4750 LicC CTP:phosphocholin 99.8 3E-20 6.5E-25 154.7 12.8 218 9-267 1-226 (231)
61 PRK15460 cpsB mannose-1-phosph 99.8 1E-19 2.3E-24 179.5 16.6 234 8-263 5-290 (478)
62 COG0836 {ManC} Mannose-1-phosp 99.8 3.3E-18 7.1E-23 155.2 17.9 234 8-264 1-283 (333)
63 PLN02917 CMP-KDO synthetase 99.8 7.8E-17 1.7E-21 150.9 21.6 228 6-269 45-290 (293)
64 TIGR00466 kdsB 3-deoxy-D-manno 99.7 7.4E-15 1.6E-19 134.1 19.3 217 11-259 2-237 (238)
65 PRK00155 ispD 2-C-methyl-D-ery 99.7 5.5E-15 1.2E-19 134.4 17.3 219 6-268 1-224 (227)
66 TIGR00453 ispD 2-C-methyl-D-er 99.6 5.9E-15 1.3E-19 133.3 17.0 211 10-265 1-216 (217)
67 TIGR00454 conserved hypothetic 99.6 3.4E-15 7.3E-20 130.3 14.2 126 9-166 1-128 (183)
68 cd02516 CDP-ME_synthetase CDP- 99.6 1.4E-14 3.1E-19 130.8 15.8 212 10-261 2-217 (218)
69 TIGR03310 matur_ygfJ molybdenu 99.6 1.2E-14 2.6E-19 128.2 14.6 121 11-161 2-124 (188)
70 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.6 3.4E-15 7.4E-20 134.6 9.9 36 229-270 31-66 (231)
71 PF12804 NTP_transf_3: MobA-li 99.6 9.7E-15 2.1E-19 125.3 11.2 120 11-163 1-122 (160)
72 PRK00317 mobA molybdopterin-gu 99.6 7E-14 1.5E-18 123.9 16.5 187 6-265 1-192 (193)
73 cd04182 GT_2_like_f GT_2_like_ 99.6 3E-14 6.4E-19 125.3 13.8 121 9-159 1-123 (186)
74 PRK13385 2-C-methyl-D-erythrit 99.6 1.2E-13 2.6E-18 125.8 17.8 219 8-268 2-225 (230)
75 PRK09382 ispDF bifunctional 2- 99.6 5E-14 1.1E-18 136.0 15.7 208 6-268 3-214 (378)
76 COG2266 GTP:adenosylcobinamide 99.6 1.8E-13 3.9E-18 113.9 15.2 110 9-153 1-112 (177)
77 cd02503 MobA MobA catalyzes th 99.6 1.1E-13 2.5E-18 121.2 14.9 115 9-161 1-117 (181)
78 COG1044 LpxD UDP-3-O-[3-hydrox 99.5 1.4E-13 2.9E-18 126.6 14.4 71 350-420 215-291 (338)
79 PRK12461 UDP-N-acetylglucosami 99.5 1.7E-13 3.6E-18 125.6 13.3 145 277-422 3-170 (255)
80 COG2068 Uncharacterized MobA-r 99.5 4.9E-13 1.1E-17 114.6 15.2 191 6-267 3-198 (199)
81 PRK02726 molybdopterin-guanine 99.5 7.7E-13 1.7E-17 117.7 16.7 187 7-264 6-196 (200)
82 cd02513 CMP-NeuAc_Synthase CMP 99.5 9.3E-13 2E-17 119.4 17.5 211 8-264 1-221 (223)
83 PRK05289 UDP-N-acetylglucosami 99.5 1.6E-13 3.5E-18 126.8 12.4 148 275-422 4-174 (262)
84 COG1212 KdsB CMP-2-keto-3-deox 99.5 1.2E-12 2.7E-17 112.8 15.6 230 7-268 2-244 (247)
85 cd05636 LbH_G1P_TT_C_like Puta 99.5 3.1E-13 6.7E-18 116.2 11.8 127 277-422 9-162 (163)
86 TIGR02665 molyb_mobA molybdopt 99.5 1.4E-12 3E-17 114.8 15.4 118 9-159 1-120 (186)
87 cd03353 LbH_GlmU_C N-acetyl-gl 99.5 5.8E-13 1.3E-17 117.9 13.0 144 275-422 23-177 (193)
88 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.5 4.1E-13 9E-18 123.9 12.3 63 360-422 103-171 (254)
89 TIGR01853 lipid_A_lpxD UDP-3-O 99.5 8.2E-13 1.8E-17 125.5 13.8 63 360-422 218-286 (324)
90 PLN02728 2-C-methyl-D-erythrit 99.5 4.1E-12 8.8E-17 116.3 17.5 215 7-267 23-245 (252)
91 COG1043 LpxA Acyl-[acyl carrie 99.4 6.3E-13 1.4E-17 115.5 10.3 147 276-422 6-175 (260)
92 TIGR01852 lipid_A_lpxA acyl-[a 99.4 7E-13 1.5E-17 122.3 11.5 63 360-422 102-170 (254)
93 PRK00560 molybdopterin-guanine 99.4 5.4E-12 1.2E-16 111.8 14.9 181 6-266 6-191 (196)
94 TIGR03202 pucB xanthine dehydr 99.4 5.1E-12 1.1E-16 111.6 14.5 125 9-158 1-127 (190)
95 PRK00892 lpxD UDP-3-O-[3-hydro 99.4 4.1E-12 8.9E-17 122.4 15.0 63 360-422 226-294 (343)
96 cd04651 LbH_G1P_AT_C Glucose-1 99.4 2.9E-12 6.4E-17 101.2 11.4 102 292-416 2-104 (104)
97 PRK14489 putative bifunctional 99.4 7.2E-12 1.6E-16 121.5 16.5 189 6-265 3-196 (366)
98 PF01128 IspD: 2-C-methyl-D-er 99.4 1.8E-11 4E-16 109.3 16.2 212 9-266 1-219 (221)
99 cd03351 LbH_UDP-GlcNAc_AT UDP- 99.4 3.1E-12 6.7E-17 118.0 11.0 35 374-408 136-170 (254)
100 TIGR01852 lipid_A_lpxA acyl-[a 99.3 1E-11 2.2E-16 114.6 12.1 50 360-409 120-170 (254)
101 cd02518 GT2_SpsF SpsF is a gly 99.3 6E-11 1.3E-15 108.3 16.4 187 11-266 2-202 (233)
102 COG0746 MobA Molybdopterin-gua 99.3 3.2E-11 6.9E-16 105.5 13.6 183 6-264 2-190 (192)
103 TIGR03584 PseF pseudaminic aci 99.3 1.9E-10 4.1E-15 103.8 18.9 208 11-265 2-219 (222)
104 COG1211 IspD 4-diphosphocytidy 99.3 2.8E-10 6.2E-15 101.1 18.9 220 7-267 3-227 (230)
105 COG1044 LpxD UDP-3-O-[3-hydrox 99.3 1.6E-11 3.6E-16 113.0 11.1 50 370-422 202-251 (338)
106 PRK14490 putative bifunctional 99.3 1.5E-10 3.4E-15 112.5 16.1 110 6-151 172-283 (369)
107 cd03352 LbH_LpxD UDP-3-O-acyl- 99.3 6E-11 1.3E-15 106.1 12.0 63 360-422 115-183 (205)
108 PLN02296 carbonate dehydratase 99.2 4.9E-11 1.1E-15 109.6 11.0 111 282-421 55-180 (269)
109 PRK05289 UDP-N-acetylglucosami 99.2 6.2E-11 1.3E-15 109.6 11.3 134 281-422 4-156 (262)
110 cd05636 LbH_G1P_TT_C_like Puta 99.2 9E-11 2E-15 100.9 11.2 80 301-403 23-102 (163)
111 cd04646 LbH_Dynactin_6 Dynacti 99.2 1.3E-10 2.7E-15 99.8 11.6 95 301-420 17-126 (164)
112 PRK12461 UDP-N-acetylglucosami 99.2 9.4E-11 2E-15 107.5 11.5 63 360-422 78-152 (255)
113 cd04652 LbH_eIF2B_gamma_C eIF- 99.2 1.2E-10 2.5E-15 87.7 9.5 65 304-387 2-67 (81)
114 cd03353 LbH_GlmU_C N-acetyl-gl 99.2 1.7E-10 3.6E-15 102.2 11.6 120 278-421 14-158 (193)
115 TIGR02287 PaaY phenylacetic ac 99.2 1.6E-10 3.4E-15 101.3 11.3 95 301-420 26-129 (192)
116 COG0663 PaaY Carbonic anhydras 99.2 1.6E-10 3.4E-15 97.2 10.5 29 360-388 79-107 (176)
117 PRK13627 carnitine operon prot 99.2 2.2E-10 4.7E-15 100.7 11.1 95 301-420 28-131 (196)
118 TIGR00965 dapD 2,3,4,5-tetrahy 99.2 1.7E-10 3.6E-15 104.5 10.4 103 278-394 105-209 (269)
119 PRK14500 putative bifunctional 99.2 3.2E-10 6.8E-15 108.3 12.4 109 8-152 160-270 (346)
120 TIGR01853 lipid_A_lpxD UDP-3-O 99.1 3E-10 6.5E-15 108.0 11.5 153 249-422 66-244 (324)
121 PLN02472 uncharacterized prote 99.1 3.7E-10 8E-15 102.4 11.5 110 282-420 62-186 (246)
122 cd04745 LbH_paaY_like paaY-lik 99.1 3.4E-10 7.4E-15 96.3 10.7 95 301-420 18-121 (155)
123 PRK11830 dapD 2,3,4,5-tetrahyd 99.1 2.2E-10 4.8E-15 104.7 10.0 32 360-391 177-209 (272)
124 cd04745 LbH_paaY_like paaY-lik 99.1 5E-10 1.1E-14 95.4 11.6 94 275-387 8-113 (155)
125 TIGR03308 phn_thr-fam phosphon 99.1 2.5E-10 5.5E-15 101.2 10.0 63 301-387 8-70 (204)
126 TIGR01173 glmU UDP-N-acetylglu 99.1 2.2E-10 4.9E-15 115.1 10.2 115 288-422 264-405 (451)
127 cd00710 LbH_gamma_CA Gamma car 99.1 5.7E-10 1.2E-14 96.2 11.0 55 360-421 71-130 (167)
128 COG0663 PaaY Carbonic anhydras 99.1 3.5E-10 7.5E-15 95.1 9.0 108 273-399 17-130 (176)
129 cd04652 LbH_eIF2B_gamma_C eIF- 99.1 4.9E-10 1.1E-14 84.3 9.0 76 289-383 3-80 (81)
130 cd04650 LbH_FBP Ferripyochelin 99.1 6.2E-10 1.4E-14 94.5 10.7 83 301-407 18-109 (154)
131 cd03352 LbH_LpxD UDP-3-O-acyl- 99.1 9.4E-10 2E-14 98.4 11.6 142 276-422 10-165 (205)
132 PRK14358 glmU bifunctional N-a 99.1 7.1E-10 1.5E-14 111.9 11.9 102 301-421 288-413 (481)
133 cd04645 LbH_gamma_CA_like Gamm 99.1 1.3E-09 2.8E-14 92.6 11.7 94 301-419 17-119 (153)
134 PRK14356 glmU bifunctional N-a 99.1 5.4E-10 1.2E-14 112.4 10.9 119 284-421 268-412 (456)
135 TIGR02287 PaaY phenylacetic ac 99.1 7.1E-10 1.5E-14 97.2 10.2 95 302-420 15-117 (192)
136 COG1207 GlmU N-acetylglucosami 99.1 3.2E-10 7E-15 106.9 8.4 119 284-421 267-411 (460)
137 PRK00892 lpxD UDP-3-O-[3-hydro 99.1 9.3E-10 2E-14 106.1 11.8 151 251-422 75-252 (343)
138 PLN02296 carbonate dehydratase 99.1 8.3E-10 1.8E-14 101.5 10.6 98 301-422 58-169 (269)
139 cd04646 LbH_Dynactin_6 Dynacti 99.1 8.4E-10 1.8E-14 94.7 9.9 17 317-333 17-33 (164)
140 cd03356 LbH_G1P_AT_C_like Left 99.1 7.5E-10 1.6E-14 82.8 8.3 65 304-387 2-67 (79)
141 cd03350 LbH_THP_succinylT 2,3, 99.1 1.5E-09 3.2E-14 90.6 10.9 41 360-400 76-117 (139)
142 TIGR00965 dapD 2,3,4,5-tetrahy 99.1 1E-09 2.2E-14 99.4 10.1 100 285-406 100-209 (269)
143 cd03350 LbH_THP_succinylT 2,3, 99.0 2E-09 4.3E-14 89.9 11.1 17 371-387 76-92 (139)
144 PRK09451 glmU bifunctional N-a 99.0 8E-10 1.7E-14 111.1 10.0 116 288-422 268-409 (456)
145 KOG1461 Translation initiation 99.0 3.6E-10 7.9E-15 110.9 7.1 97 301-422 321-417 (673)
146 PLN02472 uncharacterized prote 99.0 1.4E-09 3E-14 98.7 10.4 98 301-422 65-176 (246)
147 cd04651 LbH_G1P_AT_C Glucose-1 99.0 2E-09 4.3E-14 85.0 9.7 61 302-387 2-62 (104)
148 cd05824 LbH_M1P_guanylylT_C Ma 99.0 2.5E-09 5.4E-14 80.2 9.6 64 301-387 5-68 (80)
149 PRK14352 glmU bifunctional N-a 99.0 1E-09 2.2E-14 111.1 9.8 102 301-422 289-414 (482)
150 cd00710 LbH_gamma_CA Gamma car 99.0 2.6E-09 5.6E-14 92.1 10.8 95 274-386 9-115 (167)
151 TIGR03570 NeuD_NnaD sugar O-ac 99.0 1.6E-09 3.6E-14 96.3 9.8 68 317-408 117-185 (201)
152 cd05787 LbH_eIF2B_epsilon eIF- 99.0 1.9E-09 4.1E-14 80.6 8.4 65 304-387 2-67 (79)
153 cd04650 LbH_FBP Ferripyochelin 99.0 3.1E-09 6.8E-14 90.2 10.6 18 317-334 18-35 (154)
154 TIGR03532 DapD_Ac 2,3,4,5-tetr 99.0 1.8E-09 3.8E-14 97.6 9.5 25 317-341 116-140 (231)
155 PRK14355 glmU bifunctional N-a 99.0 2.2E-09 4.8E-14 108.0 10.7 65 301-388 274-338 (459)
156 cd03359 LbH_Dynactin_5 Dynacti 99.0 5E-09 1.1E-13 89.7 11.3 97 301-417 27-135 (161)
157 PRK14353 glmU bifunctional N-a 99.0 2.5E-09 5.3E-14 107.4 10.8 124 278-409 279-413 (446)
158 PRK14357 glmU bifunctional N-a 99.0 2.1E-09 4.6E-14 107.9 10.3 62 360-421 313-397 (448)
159 cd04645 LbH_gamma_CA_like Gamm 99.0 3.6E-09 7.7E-14 89.9 10.1 97 301-421 5-109 (153)
160 cd04649 LbH_THP_succinylT_puta 99.0 6.8E-09 1.5E-13 85.0 10.8 15 318-332 48-62 (147)
161 COG1043 LpxA Acyl-[acyl carrie 99.0 3.1E-09 6.7E-14 92.7 9.1 132 279-420 3-155 (260)
162 cd03360 LbH_AT_putative Putati 99.0 4.1E-09 8.8E-14 93.1 9.9 44 360-409 139-183 (197)
163 cd03356 LbH_G1P_AT_C_like Left 98.9 6.7E-09 1.5E-13 77.6 8.9 74 289-381 3-79 (79)
164 cd03358 LbH_WxcM_N_like WcxM-l 98.9 4.2E-09 9.1E-14 85.4 8.2 67 301-387 16-84 (119)
165 TIGR03570 NeuD_NnaD sugar O-ac 98.9 1.5E-08 3.2E-13 90.1 12.4 19 249-267 62-80 (201)
166 cd03360 LbH_AT_putative Putati 98.9 8E-09 1.7E-13 91.2 10.1 12 410-421 171-182 (197)
167 TIGR03308 phn_thr-fam phosphon 98.9 9.6E-09 2.1E-13 91.2 9.9 59 275-334 10-70 (204)
168 PRK13627 carnitine operon prot 98.9 1.1E-08 2.5E-13 89.9 9.6 27 360-386 95-122 (196)
169 TIGR03536 DapD_gpp 2,3,4,5-tet 98.9 7.9E-09 1.7E-13 94.5 8.6 26 396-421 252-280 (341)
170 cd05635 LbH_unknown Uncharacte 98.9 1.7E-08 3.7E-13 79.0 9.3 65 302-387 30-96 (101)
171 KOG1460 GDP-mannose pyrophosph 98.9 5.1E-09 1.1E-13 93.9 7.1 66 273-338 288-361 (407)
172 PRK14359 glmU bifunctional N-a 98.9 1.1E-08 2.3E-13 102.3 10.2 20 396-416 381-400 (430)
173 cd05787 LbH_eIF2B_epsilon eIF- 98.9 9.7E-09 2.1E-13 76.7 7.4 78 319-417 1-78 (79)
174 PRK14360 glmU bifunctional N-a 98.8 1.6E-08 3.6E-13 101.5 10.3 102 301-422 280-405 (450)
175 PRK14354 glmU bifunctional N-a 98.8 1.4E-08 2.9E-13 102.4 9.5 101 301-421 283-407 (458)
176 PRK11830 dapD 2,3,4,5-tetrahyd 98.8 3.8E-08 8.2E-13 90.1 10.8 16 371-386 177-192 (272)
177 cd04193 UDPGlcNAc_PPase UDPGlc 98.8 2.1E-07 4.5E-12 88.3 15.5 157 7-167 14-196 (323)
178 cd05635 LbH_unknown Uncharacte 98.8 6.8E-08 1.5E-12 75.6 10.0 65 317-421 29-93 (101)
179 cd04180 UGPase_euk_like Eukary 98.8 4.8E-07 1E-11 83.7 17.2 202 10-218 2-241 (266)
180 TIGR03535 DapD_actino 2,3,4,5- 98.8 3.5E-08 7.6E-13 89.9 9.2 28 395-422 226-256 (319)
181 cd04649 LbH_THP_succinylT_puta 98.7 7.1E-08 1.5E-12 79.1 9.7 36 302-341 14-53 (147)
182 COG2171 DapD Tetrahydrodipicol 98.7 3.8E-08 8.3E-13 87.8 8.7 96 278-387 113-211 (271)
183 COG1083 NeuA CMP-N-acetylneura 98.7 4.9E-07 1.1E-11 78.0 14.3 212 6-268 1-224 (228)
184 cd03358 LbH_WxcM_N_like WcxM-l 98.7 6.4E-08 1.4E-12 78.4 8.5 84 301-406 4-97 (119)
185 COG2171 DapD Tetrahydrodipicol 98.7 3.8E-08 8.2E-13 87.8 7.5 98 286-405 109-217 (271)
186 cd05824 LbH_M1P_guanylylT_C Ma 98.7 1.3E-07 2.8E-12 70.8 9.2 62 301-381 17-80 (80)
187 PLN02694 serine O-acetyltransf 98.7 5.8E-08 1.3E-12 89.0 8.3 24 317-340 180-203 (294)
188 KOG1462 Translation initiation 98.7 5.7E-08 1.2E-12 90.5 7.6 118 248-387 300-419 (433)
189 cd03359 LbH_Dynactin_5 Dynacti 98.7 1.6E-07 3.5E-12 80.4 9.7 36 301-340 21-59 (161)
190 PRK10502 putative acyl transfe 98.7 1.2E-07 2.7E-12 82.7 9.1 18 317-334 71-88 (182)
191 TIGR03536 DapD_gpp 2,3,4,5-tet 98.6 3.7E-07 8E-12 83.7 11.3 16 317-332 224-239 (341)
192 PRK11132 cysE serine acetyltra 98.6 2.7E-08 5.8E-13 91.2 3.7 80 301-392 147-227 (273)
193 cd00208 LbetaH Left-handed par 98.6 2.8E-07 6.2E-12 68.3 8.2 19 317-335 18-36 (78)
194 COG1045 CysE Serine acetyltran 98.6 2.2E-07 4.8E-12 79.2 7.9 13 410-422 140-152 (194)
195 PRK09527 lacA galactoside O-ac 98.6 2.9E-07 6.2E-12 81.2 8.8 25 317-341 75-101 (203)
196 PLN02474 UTP--glucose-1-phosph 98.6 1.1E-05 2.3E-10 79.6 20.3 344 7-376 78-466 (469)
197 PRK05293 glgC glucose-1-phosph 98.5 2E-07 4.3E-12 91.6 8.3 91 275-386 284-380 (380)
198 cd00208 LbetaH Left-handed par 98.5 5.2E-07 1.1E-11 66.8 8.5 33 303-339 2-34 (78)
199 TIGR02092 glgD glucose-1-phosp 98.5 3.1E-07 6.8E-12 89.8 9.1 61 301-387 278-338 (369)
200 PRK09677 putative lipopolysacc 98.5 6.6E-07 1.4E-11 78.8 10.3 41 301-341 49-91 (192)
201 PRK02862 glgC glucose-1-phosph 98.5 4.2E-07 9E-12 90.5 9.2 100 302-422 293-423 (429)
202 PTZ00339 UDP-N-acetylglucosami 98.5 5.3E-06 1.1E-10 82.3 16.7 205 7-218 105-351 (482)
203 cd03354 LbH_SAT Serine acetylt 98.5 7E-07 1.5E-11 70.0 8.1 19 368-386 52-70 (101)
204 KOG3121 Dynactin, subunit p25 98.5 4.2E-07 9.1E-12 72.5 6.6 98 301-418 39-148 (184)
205 TIGR01172 cysE serine O-acetyl 98.5 5.4E-07 1.2E-11 77.1 7.8 22 318-339 82-103 (162)
206 PLN02357 serine acetyltransfer 98.5 6E-07 1.3E-11 84.7 8.5 23 318-340 247-269 (360)
207 PRK10191 putative acyl transfe 98.5 1.8E-06 3.9E-11 72.0 10.4 27 360-386 99-126 (146)
208 TIGR02091 glgC glucose-1-phosp 98.5 6.5E-07 1.4E-11 87.3 9.1 63 305-387 281-344 (361)
209 PRK09527 lacA galactoside O-ac 98.4 1.9E-06 4.2E-11 76.0 11.0 102 283-393 59-166 (203)
210 TIGR01208 rmlA_long glucose-1- 98.4 9.3E-07 2E-11 85.9 9.9 19 367-385 319-337 (353)
211 TIGR03535 DapD_actino 2,3,4,5- 98.4 2.5E-06 5.4E-11 78.0 11.7 28 360-388 232-259 (319)
212 PRK00725 glgC glucose-1-phosph 98.4 5.4E-07 1.2E-11 89.6 8.0 54 314-387 324-377 (425)
213 PRK10191 putative acyl transfe 98.4 7.5E-07 1.6E-11 74.3 7.4 79 302-393 48-127 (146)
214 PRK11132 cysE serine acetyltra 98.4 1.2E-06 2.6E-11 80.4 9.3 28 360-387 200-228 (273)
215 cd03357 LbH_MAT_GAT Maltose O- 98.4 1.9E-06 4.2E-11 74.3 9.9 85 301-391 62-151 (169)
216 PRK10092 maltose O-acetyltrans 98.4 1.9E-06 4.1E-11 75.0 9.8 87 301-393 73-164 (183)
217 PLN02739 serine acetyltransfer 98.4 6.2E-07 1.4E-11 83.9 7.1 22 318-339 226-247 (355)
218 PRK00844 glgC glucose-1-phosph 98.4 9.9E-07 2.1E-11 87.3 8.9 54 314-387 312-365 (407)
219 PRK10502 putative acyl transfe 98.4 2.5E-06 5.3E-11 74.5 10.3 82 301-391 71-157 (182)
220 TIGR01172 cysE serine O-acetyl 98.4 1.9E-06 4.1E-11 73.7 9.4 28 360-387 120-148 (162)
221 COG0448 GlgC ADP-glucose pyrop 98.4 1.3E-06 2.9E-11 82.7 8.8 62 305-387 283-345 (393)
222 PLN02739 serine acetyltransfer 98.4 2.3E-06 4.9E-11 80.2 9.8 53 317-387 231-292 (355)
223 PLN02357 serine acetyltransfer 98.4 2.8E-06 6.1E-11 80.3 10.2 28 360-387 285-313 (360)
224 PRK09677 putative lipopolysacc 98.3 5.4E-06 1.2E-10 73.0 11.3 91 301-393 65-165 (192)
225 cd03357 LbH_MAT_GAT Maltose O- 98.3 2.5E-06 5.4E-11 73.6 9.0 24 318-341 63-88 (169)
226 PLN02694 serine O-acetyltransf 98.3 2.4E-06 5.2E-11 78.5 9.1 28 360-387 219-247 (294)
227 PLN02241 glucose-1-phosphate a 98.3 2.4E-06 5.1E-11 85.4 8.9 93 306-419 304-420 (436)
228 COG1208 GCD1 Nucleoside-diphos 98.3 3E-06 6.5E-11 82.1 9.3 52 317-386 261-312 (358)
229 PRK10092 maltose O-acetyltrans 98.2 6.2E-06 1.3E-10 71.8 9.2 14 395-408 148-161 (183)
230 cd04647 LbH_MAT_like Maltose O 98.2 5.8E-06 1.3E-10 65.6 8.1 32 302-335 8-39 (109)
231 cd05825 LbH_wcaF_like wcaF-lik 98.2 1.3E-05 2.9E-10 63.4 9.9 33 360-392 57-90 (107)
232 KOG4750 Serine O-acetyltransfe 98.2 3.6E-06 7.8E-11 72.8 6.8 26 396-421 202-232 (269)
233 cd05825 LbH_wcaF_like wcaF-lik 98.2 9E-06 2E-10 64.4 8.6 17 317-333 23-39 (107)
234 COG1045 CysE Serine acetyltran 98.2 4.5E-06 9.8E-11 71.3 7.1 67 317-387 87-154 (194)
235 PF02348 CTP_transf_3: Cytidyl 98.2 1.9E-05 4.1E-10 71.1 11.6 116 11-158 2-120 (217)
236 COG1861 SpsF Spore coat polysa 98.2 9.1E-05 2E-09 64.5 15.0 117 7-159 2-124 (241)
237 cd04647 LbH_MAT_like Maltose O 98.2 1.4E-05 3.1E-10 63.4 9.1 27 360-386 59-86 (109)
238 PRK00576 molybdopterin-guanine 98.1 5.6E-05 1.2E-09 65.8 13.1 97 29-155 3-103 (178)
239 cd03354 LbH_SAT Serine acetylt 98.1 2.1E-05 4.6E-10 61.6 8.3 27 360-386 61-88 (101)
240 cd03349 LbH_XAT Xenobiotic acy 97.8 0.00013 2.8E-09 61.1 9.3 33 360-392 74-107 (145)
241 cd00897 UGPase_euk Eukaryotic 97.8 0.0011 2.4E-08 62.0 15.9 204 7-219 2-234 (300)
242 KOG1322 GDP-mannose pyrophosph 97.8 2.4E-05 5.1E-10 72.0 4.2 34 302-335 283-317 (371)
243 COG0110 WbbJ Acetyltransferase 97.8 0.00016 3.5E-09 63.5 9.4 87 301-393 67-159 (190)
244 cd03349 LbH_XAT Xenobiotic acy 97.7 0.00014 3.1E-09 60.8 7.3 23 319-341 3-27 (145)
245 KOG3121 Dynactin, subunit p25 97.6 8.5E-05 1.9E-09 59.6 4.7 12 301-312 54-65 (184)
246 COG0110 WbbJ Acetyltransferase 97.6 0.00018 3.9E-09 63.3 7.0 12 410-421 145-156 (190)
247 TIGR02353 NRPS_term_dom non-ri 97.6 0.00032 6.9E-09 73.8 9.7 87 301-400 112-202 (695)
248 PF01704 UDPGP: UTP--glucose-1 97.6 0.0046 1E-07 60.9 16.9 257 6-268 54-357 (420)
249 PRK13412 fkp bifunctional fuco 97.5 0.0044 9.5E-08 66.5 17.0 207 131-373 154-392 (974)
250 PLN02435 probable UDP-N-acetyl 97.5 0.002 4.3E-08 64.2 13.3 205 7-218 115-364 (493)
251 TIGR02353 NRPS_term_dom non-ri 97.4 0.0004 8.7E-09 73.1 8.5 74 301-387 597-674 (695)
252 KOG4750 Serine O-acetyltransfe 97.4 0.00028 6E-09 61.4 5.5 67 317-393 168-235 (269)
253 COG4801 Predicted acyltransfer 97.4 0.00064 1.4E-08 59.4 7.3 63 301-387 22-85 (277)
254 KOG4042 Dynactin subunit p27/W 97.3 0.00076 1.6E-08 54.7 6.2 92 301-402 26-139 (190)
255 KOG4042 Dynactin subunit p27/W 97.2 0.0007 1.5E-08 54.9 5.6 11 301-311 47-57 (190)
256 PF07959 Fucokinase: L-fucokin 97.1 0.005 1.1E-07 60.8 11.4 85 130-218 54-158 (414)
257 cd06424 UGGPase UGGPase cataly 97.0 0.0031 6.7E-08 59.4 8.3 203 10-219 2-253 (315)
258 TIGR03552 F420_cofC 2-phospho- 96.9 0.0055 1.2E-07 54.1 8.7 85 41-153 31-117 (195)
259 PF00132 Hexapep: Bacterial tr 96.8 0.0014 3E-08 40.5 3.2 15 320-334 4-18 (36)
260 COG4801 Predicted acyltransfer 96.8 0.0064 1.4E-07 53.3 8.2 64 301-387 39-103 (277)
261 COG4284 UDP-glucose pyrophosph 96.7 0.035 7.7E-07 54.3 13.4 195 7-214 104-335 (472)
262 PLN02830 UDP-sugar pyrophospho 96.6 0.022 4.7E-07 58.6 11.8 156 7-167 127-313 (615)
263 PF14602 Hexapep_2: Hexapeptid 96.0 0.012 2.5E-07 35.8 3.5 13 320-332 4-16 (34)
264 cd00761 Glyco_tranf_GTA_type G 94.8 0.46 1E-05 38.6 10.8 98 33-152 2-102 (156)
265 PF00535 Glycos_transf_2: Glyc 92.7 1.9 4.2E-05 35.7 11.1 108 33-162 3-113 (169)
266 KOG2638 UDP-glucose pyrophosph 89.7 21 0.00046 34.8 18.5 342 7-380 102-496 (498)
267 PF07959 Fucokinase: L-fucokin 89.2 0.67 1.5E-05 45.9 5.4 27 237-263 225-252 (414)
268 cd04186 GT_2_like_c Subfamily 88.1 8.4 0.00018 31.8 10.9 98 33-155 2-102 (166)
269 COG1920 Predicted nucleotidylt 87.8 4.9 0.00011 34.8 8.8 106 9-153 1-112 (210)
270 cd06434 GT2_HAS Hyaluronan syn 87.2 6.8 0.00015 35.0 10.4 97 33-153 5-103 (235)
271 cd02525 Succinoglycan_BP_ExoA 86.3 6 0.00013 35.5 9.6 103 34-159 6-113 (249)
272 cd04179 DPM_DPG-synthase_like 83.4 7.9 0.00017 32.9 8.6 106 34-161 3-113 (185)
273 cd06423 CESA_like CESA_like is 81.9 14 0.00029 30.5 9.4 102 33-155 2-106 (180)
274 PLN02726 dolichyl-phosphate be 80.1 16 0.00034 33.1 9.7 47 109-161 80-127 (243)
275 cd06427 CESA_like_2 CESA_like_ 79.0 24 0.00051 31.8 10.5 108 34-162 7-119 (241)
276 cd02510 pp-GalNAc-T pp-GalNAc- 76.5 25 0.00055 32.9 10.2 104 34-157 4-113 (299)
277 cd04188 DPG_synthase DPG_synth 76.4 23 0.0005 31.0 9.4 49 108-162 68-117 (211)
278 cd06442 DPM1_like DPM1_like re 76.4 19 0.00042 31.6 9.0 105 33-159 2-110 (224)
279 cd06439 CESA_like_1 CESA_like_ 74.9 39 0.00085 30.3 10.8 104 26-153 25-135 (251)
280 KOG2388 UDP-N-acetylglucosamin 74.5 2.7 5.8E-05 41.6 2.9 72 7-82 96-182 (477)
281 PRK10073 putative glycosyl tra 74.3 30 0.00065 33.1 10.1 105 34-161 12-119 (328)
282 cd06433 GT_2_WfgS_like WfgS an 73.5 34 0.00073 29.1 9.6 97 34-155 4-103 (202)
283 cd04195 GT2_AmsE_like GT2_AmsE 73.3 49 0.0011 28.4 10.7 99 33-154 3-107 (201)
284 PRK11204 N-glycosyltransferase 68.9 42 0.00091 33.2 10.2 102 33-156 59-163 (420)
285 PRK14583 hmsR N-glycosyltransf 67.4 42 0.00091 33.6 9.9 102 32-155 79-183 (444)
286 cd06438 EpsO_like EpsO protein 66.8 79 0.0017 26.8 10.4 102 33-154 2-108 (183)
287 cd04187 DPM1_like_bac Bacteria 66.4 61 0.0013 27.3 9.6 47 108-161 66-113 (181)
288 cd06421 CESA_CelA_like CESA_Ce 66.2 68 0.0015 28.2 10.2 100 33-154 6-111 (234)
289 cd04184 GT2_RfbC_Mx_like Myxoc 66.1 51 0.0011 28.3 9.2 39 109-153 70-109 (202)
290 cd06420 GT2_Chondriotin_Pol_N 65.1 50 0.0011 27.7 8.8 99 34-152 3-104 (182)
291 cd04196 GT_2_like_d Subfamily 62.7 78 0.0017 27.3 9.8 101 33-154 3-106 (214)
292 PRK10714 undecaprenyl phosphat 61.8 88 0.0019 29.9 10.5 46 108-160 76-122 (325)
293 PF04519 Bactofilin: Polymer-f 61.3 24 0.00051 27.1 5.3 20 360-379 37-56 (101)
294 cd04192 GT_2_like_e Subfamily 61.1 71 0.0015 27.9 9.3 106 33-158 2-113 (229)
295 PF01983 CofC: Guanylyl transf 59.9 4.7 0.0001 36.0 1.3 104 9-152 1-113 (217)
296 TIGR03111 glyc2_xrt_Gpos1 puta 58.9 90 0.0019 31.2 10.4 102 33-156 54-160 (439)
297 cd02526 GT2_RfbF_like RfbF is 58.7 1.3E+02 0.0028 26.5 12.2 93 34-149 3-97 (237)
298 cd02522 GT_2_like_a GT_2_like_ 58.6 92 0.002 27.1 9.6 95 33-156 4-101 (221)
299 cd02520 Glucosylceramide_synth 55.4 1.3E+02 0.0029 25.7 10.9 103 33-152 6-111 (196)
300 PRK13412 fkp bifunctional fuco 55.0 20 0.00044 39.4 5.2 28 360-387 343-371 (974)
301 cd04185 GT_2_like_b Subfamily 54.2 1.2E+02 0.0025 26.1 9.4 100 34-153 3-105 (202)
302 KOG2978 Dolichol-phosphate man 54.1 1.5E+02 0.0033 25.9 10.9 98 41-161 19-122 (238)
303 cd02511 Beta4Glucosyltransfera 51.0 1.5E+02 0.0031 26.4 9.6 93 33-154 5-98 (229)
304 PF13641 Glyco_tranf_2_3: Glyc 49.9 38 0.00083 29.8 5.6 100 33-152 6-111 (228)
305 PRK10018 putative glycosyl tra 48.9 2.3E+02 0.0049 26.4 11.3 97 34-154 11-112 (279)
306 TIGR03469 HonB hopene-associat 48.0 1.8E+02 0.004 28.3 10.5 114 33-159 45-165 (384)
307 PF05060 MGAT2: N-acetylglucos 47.9 22 0.00048 34.2 3.7 56 19-74 22-80 (356)
308 TIGR03472 HpnI hopanoid biosyn 47.3 1.3E+02 0.0028 29.3 9.2 102 33-154 46-153 (373)
309 PRK11498 bcsA cellulose syntha 46.9 1.5E+02 0.0033 32.5 10.2 104 33-164 265-375 (852)
310 PTZ00260 dolichyl-phosphate be 46.1 1.4E+02 0.0031 28.5 9.2 50 108-163 148-201 (333)
311 TIGR01556 rhamnosyltran L-rham 43.2 2E+02 0.0042 26.4 9.5 90 42-155 9-101 (281)
312 cd06913 beta3GnTL1_like Beta 1 43.0 2E+02 0.0044 25.0 9.2 105 34-156 3-113 (219)
313 PRK00923 sirohydrochlorin coba 42.4 34 0.00074 27.4 3.7 23 38-61 44-66 (126)
314 cd06435 CESA_NdvC_like NdvC_li 41.9 2E+02 0.0043 25.3 9.1 98 33-153 3-110 (236)
315 PRK10063 putative glycosyl tra 38.0 3.1E+02 0.0067 24.8 11.4 41 109-155 69-109 (248)
316 COG1215 Glycosyltransferases, 37.3 1.6E+02 0.0035 28.9 8.4 104 33-156 59-166 (439)
317 cd06437 CESA_CaSu_A2 Cellulose 37.1 1.4E+02 0.0031 26.3 7.3 37 110-152 75-112 (232)
318 COG0381 WecB UDP-N-acetylgluco 34.9 94 0.002 30.3 5.8 81 47-143 23-106 (383)
319 PRK13915 putative glucosyl-3-p 34.5 2.8E+02 0.0061 26.2 9.0 49 108-162 101-152 (306)
320 cd06436 GlcNAc-1-P_transferase 33.8 3E+02 0.0065 23.4 9.0 106 33-152 2-114 (191)
321 TIGR03030 CelA cellulose synth 32.3 3.4E+02 0.0074 29.2 10.2 41 109-155 215-256 (713)
322 cd03409 Chelatase_Class_II Cla 31.6 60 0.0013 24.5 3.3 22 41-62 45-66 (101)
323 COG1664 CcmA Integral membrane 27.2 3.7E+02 0.0079 22.4 8.8 26 314-339 47-73 (146)
324 COG1216 Predicted glycosyltran 27.2 3.5E+02 0.0076 25.3 8.4 97 41-159 16-116 (305)
325 cd02514 GT13_GLCNAC-TI GT13_GL 26.9 5.5E+02 0.012 24.7 9.6 96 33-145 5-114 (334)
326 PRK09822 lipopolysaccharide co 25.1 1.3E+02 0.0028 27.1 4.4 47 10-63 23-69 (269)
327 TIGR02990 ectoine_eutA ectoine 23.5 5.6E+02 0.012 23.2 8.7 31 44-74 109-142 (239)
328 PF00583 Acetyltransf_1: Acety 21.9 87 0.0019 22.1 2.6 34 41-74 45-78 (83)
329 KOG1185 Thiamine pyrophosphate 21.7 3.1E+02 0.0066 27.8 6.7 45 109-161 435-479 (571)
No 1
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-60 Score=443.54 Aligned_cols=383 Identities=39% Similarity=0.685 Sum_probs=335.0
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
+++-|+|||+|.|+||.|||+.++||-+|++|||+|||++|++|.++|+.+|.|++.|+...+.+|++.-++|+.+. .
T Consensus 4 ~~~laiILaGg~G~rL~~LT~~RakpAVpFgGkYRiIDF~LSN~vNSGi~~I~VltQy~~~SL~~Hi~~G~~w~l~~--~ 81 (393)
T COG0448 4 KNVLAIILAGGRGSRLSPLTKDRAKPAVPFGGKYRIIDFALSNCVNSGIRRIGVLTQYKSHSLNDHIGRGWPWDLDR--K 81 (393)
T ss_pred cceEEEEEcCCCCCccchhhhCccccccccCceeEEEeEEcccccccCCCeEEEEeccchhHHHHHhhCCCcccccc--c
Confidence 45679999999999999999999999999999999999999999999999999999999999999998766553322 1
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeec
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
.+.+.++++.+. +-+..|+.||++|+++.+.++.+. ..+.+|++.||+++..|+.++++.|.+.++++|+++.++
T Consensus 82 ~~~v~ilp~~~~--~~~~~wy~Gtadai~Qnl~~i~~~---~~eyvlIlsgDhIYkmDy~~ml~~H~~~gadiTv~~~~V 156 (393)
T COG0448 82 NGGVFILPAQQR--EGGERWYEGTADAIYQNLLIIRRS---DPEYVLILSGDHIYKMDYSDMLDFHIESGADVTVAVKEV 156 (393)
T ss_pred cCcEEEeCchhc--cCCCcceeccHHHHHHhHHHHHhc---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEEEC
Confidence 345888887554 224579999999999999888764 478999999999999999999999999999999999999
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCC-CCC-ceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhcccCce
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAE-EKP-YIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQFL 241 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~-~~~-~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~~~~~i 241 (422)
+..+ ++.+++..+|++++|++|.+||.. ... .++++|+|+|++++|.++|++... ...+|+++++|.+++..++
T Consensus 157 p~~e-as~fGim~~D~~~~i~~F~eKp~~~~~~~~laSMgiYIf~~~~L~~~L~~~~~~~~~~~DfgkdiIp~~~~~~~v 235 (393)
T COG0448 157 PREE-ASRFGVMNVDENGRIIEFVEKPADGPPSNSLASMGIYIFNTDLLKELLEEDAKDPNSSHDFGKDIIPKLLERGKV 235 (393)
T ss_pred ChHh-hhhcCceEECCCCCEEeeeeccCcCCcccceeeeeeEEEcHHHHHHHHHHHhcccCccccchHHHHHHHHhcCCE
Confidence 8743 566677777888999999999986 333 389999999999999988876543 3468899999999999999
Q ss_pred eEEEecceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCcee-cCCcccccEEcCCCEEccceeeeeEE
Q 014564 242 KAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 320 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s~i 320 (422)
++|+++|||.|++|.++|+++|++|++..+.+.++++++++++.....||+.+ .++.+.+|.|+.||+|.+ .|.+|++
T Consensus 236 ~AY~f~gYw~dVgTi~syy~aNmdLl~~~~~~~lyd~~w~IyT~~~~~pPak~~~~s~v~nSLv~~GciI~G-~V~nSVL 314 (393)
T COG0448 236 YAYEFSGYWRDVGTIDSYYEANMDLLSPQPELNLYDRNWPIYTKNKNLPPAKFVNDSEVSNSLVAGGCIISG-TVENSVL 314 (393)
T ss_pred EEEeccchhhhcccHHHHHHhhHHhcCCCCcccccCCCCceeecCCCCCCceEecCceEeeeeeeCCeEEEe-EEEeeEE
Confidence 99999999999999999999999999977778889999999999999999999 677888999999999998 9999999
Q ss_pred cCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccCCC
Q 014564 321 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 400 (422)
Q Consensus 321 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~ 400 (422)
+.+++|+.+|.|++|++|++ |.||.||.|.+|||++||.|++|++|++...-...++ .
T Consensus 315 ~~~v~I~~gs~i~~svim~~-------------------~~IG~~~~l~~aIIDk~v~I~~g~~i~~~~~~~d~~~---~ 372 (393)
T COG0448 315 FRGVRIGKGSVIENSVIMPD-------------------VEIGEGAVLRRAIIDKNVVIGEGVVIGGDKPEEDRKR---F 372 (393)
T ss_pred ecCeEECCCCEEEeeEEeCC-------------------cEECCCCEEEEEEeCCCcEeCCCcEEcCCcchhcccc---c
Confidence 99999999999999999998 9999999999999999999999999998642222222 3
Q ss_pred eEEcCCeEEEcCCceecCCcc
Q 014564 401 FYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 401 ~~i~~~~~~ig~~~~i~~g~~ 421 (422)
.+. ++.+||+++..++.+..
T Consensus 373 ~~~-~~ivVv~k~~~~~~~~~ 392 (393)
T COG0448 373 RSE-EGIVVVPKGMVIKLDIM 392 (393)
T ss_pred ccc-CCcEEEecccEeccccc
Confidence 444 78888999998887654
No 2
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=100.00 E-value=1e-58 Score=459.63 Aligned_cols=414 Identities=70% Similarity=1.181 Sum_probs=338.2
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|.+|+|||||||.|+||+|||..+||||+|++|+||||+|+|++|.++|+++++|+++++.+++.+|+++.|.++.+..+
T Consensus 1 ~~~~~aIIlA~G~gtRl~PlT~~~PK~llpv~g~~plId~~L~~l~~~Gi~~i~iv~~~~~~~i~~~l~~~~~~~~~~~~ 80 (436)
T PLN02241 1 PKSVAAIILGGGAGTRLFPLTKRRAKPAVPIGGNYRLIDIPMSNCINSGINKIYVLTQFNSASLNRHLSRAYNFGNGGNF 80 (436)
T ss_pred CCceEEEEEeCCCCCcchhhhcCCcccceEeCCcceEehHHHHHHHhCCCCEEEEEeccCHHHHHHHHhccCCCCCCccc
Confidence 56899999999999999999999999999999977999999999999999999999999999999999865534333333
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEee
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~ 165 (422)
....+.++...+.. .+..+++|++++++.++.++++....+.++||+++||.+++.++.+++++|+++++++|+++.+
T Consensus 81 ~~~~~~i~~~~q~~--~~~~~~lGt~~al~~~~~~~~~~~~~~~~~~lv~~gD~v~~~dl~~ll~~h~~~~a~~ti~~~~ 158 (436)
T PLN02241 81 GDGFVEVLAATQTP--GEKGWFQGTADAVRQFLWLFEDAKNKNVEEVLILSGDHLYRMDYMDFVQKHRESGADITIACLP 158 (436)
T ss_pred CCCCEEEcCCcccC--CCCccccCcHHHHHHHHHHHHhcccCCCCEEEEecCCeEEccCHHHHHHHHHHcCCCEEEEEEe
Confidence 32335555543321 1112457999999999888764211124899999999999999999999999999999998877
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCCC---------------------CceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEK---------------------PYIASMGVYLFKKEILLNLLRWRFPTA 224 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~---------------------~~~~~~Giy~~~~~~l~~ll~~~~~~~ 224 (422)
.+. +++..+++..++.++++.+|.+||.... .+++++|+|+|++++|..+++..++..
T Consensus 159 v~~-~~~~~ygvv~~d~~~~v~~~~Ekp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GIyi~~~~~l~~ll~~~~~~~ 237 (436)
T PLN02241 159 VDE-SRASDFGLMKIDDTGRIIEFSEKPKGDELKAMQVDTTVLGLSPEEAKEKPYIASMGIYVFKKDVLLKLLRWRFPTA 237 (436)
T ss_pred cch-hhcCcceEEEECCCCCEEEEEECCCCcccccccccccccccccccccccceEEEeEEEEEEHHHHHHHHHhhcccc
Confidence 653 2356667777777789999999975321 378999999999999977777654443
Q ss_pred Cccccchhhhhccc-CceeEEEecceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCceecCCcccccE
Q 014564 225 NDFGSEIIPASANE-QFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSI 303 (422)
Q Consensus 225 ~~~~~~~l~~l~~~-~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (422)
.++..++++.++++ .++++|.+++||.|+++|++|+++++.++...+...++.+...+.......+|+.+.++.+.++.
T Consensus 238 ~~~~~dil~~l~~~g~~v~~~~~~gyw~dIg~~~~y~~a~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~~s~ 317 (436)
T PLN02241 238 NDFGSEIIPGAIKEGYNVQAYLFDGYWEDIGTIKSFYEANLALTKQPPKFSFYDPDAPIYTSPRFLPPSKIEDCRITDSI 317 (436)
T ss_pred cchhHHHHHHHhhcCCeEEEEeeCCEEEECCCHHHHHHHHHHHhcCCchhhccCCCCcccccCCCCCCcEecCCeEEEeE
Confidence 46677899998876 78999999999999999999999999999876555556666677776677788888888888899
Q ss_pred EcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCe
Q 014564 304 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 383 (422)
Q Consensus 304 i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~ 383 (422)
|+++|.|+++.|.+|+||++|+|+++|.|.+++++|.++++.......+...+..++.||++|.+.+++|+++|.||+++
T Consensus 318 I~~~~~I~~~~I~~svI~~~~~Ig~~~~I~~sii~g~~~~~~~~~~~~~~~~~~~~~~Ig~~~~i~~~vI~~~v~Ig~~~ 397 (436)
T PLN02241 318 ISHGCFLRECKIEHSVVGLRSRIGEGVEIEDTVMMGADYYETEEEIASLLAEGKVPIGIGENTKIRNAIIDKNARIGKNV 397 (436)
T ss_pred EcCCcEEcCeEEEeeEEcCCCEECCCCEEEEeEEECCCccccccccccccccCCcceEECCCCEEcceEecCCCEECCCc
Confidence 99999999778899999999999999999999999965444332222333333223589999999999999999999999
Q ss_pred EEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 384 IIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 384 ~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
++.+++++.+..+++++++|++|.++||+++.|.+|++|
T Consensus 398 ~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 436 (436)
T PLN02241 398 VIINKDGVQEADREEEGYYIRSGIVVILKNAVIPDGTVI 436 (436)
T ss_pred EEecccccCCccccccccEEeCCEEEEcCCcEeCCCCCC
Confidence 999999999999999999999997789999999999986
No 3
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.7e-55 Score=435.38 Aligned_cols=407 Identities=57% Similarity=0.977 Sum_probs=328.1
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|++++|||||||.|+||+|||..+||||+|++|+||||+|+|++|.++|+++++|++++..+++++|+.+.+.+. .+
T Consensus 1 m~~~~AVILAaG~GtRL~PLT~~~PK~Llpi~gk~plI~~~L~~l~~~Gi~~vivv~~~~~~~i~~~l~~~~~~~---~~ 77 (429)
T PRK02862 1 MKRVLAIILGGGAGTRLYPLTKLRAKPAVPLAGKYRLIDIPISNCINSGINKIYVLTQFNSASLNRHISQTYNFD---GF 77 (429)
T ss_pred CCcEEEEEECCCCCCcchhhhcCCcceeeEECCeeEEeHHHHHHHHHCCCCEEEEEecCCHHHHHHHHhcCcCcc---cc
Confidence 457899999999999999999999999999999989999999999999999999999999999999997643211 11
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEee
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~ 165 (422)
....+.++...+.. ....+++||++||+.+++++... ..++|||++||++++.++.++++.|++.++++|+++.+
T Consensus 78 ~~g~~~i~~~~~~~--~~~~~~lGTa~al~~a~~~l~~~---~~~~~lVl~gD~l~~~dl~~ll~~h~~~~a~~tl~~~~ 152 (429)
T PRK02862 78 SGGFVEVLAAQQTP--ENPSWFQGTADAVRKYLWHFQEW---DVDEYLILSGDQLYRMDYRLFVQHHRETGADITLAVLP 152 (429)
T ss_pred CCCEEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEeCCHHHHHHHHHHcCCCEEEEEEe
Confidence 11124444433321 01123469999999999998631 13789999999999999999999999988889888866
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCC---------------------CCceeeeeEEEEeHHHHHHHHhhhCCCC
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE---------------------KPYIASMGVYLFKKEILLNLLRWRFPTA 224 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~---------------------~~~~~~~Giy~~~~~~l~~ll~~~~~~~ 224 (422)
.+. +.+..+++..++.++++..|.+||... ..+++++|+|+|++++|..+++... ..
T Consensus 153 ~~~-~~~~~yG~i~~d~~g~V~~~~Ekp~~~~~~~~~~~~s~~~~~~~~~~~~~~~~n~Giyi~~~~vl~~~l~~~~-~~ 230 (429)
T PRK02862 153 VDE-KDASGFGLMKTDDDGRITEFSEKPKGDELKAMAVDTSRLGLSPEEAKGKPYLASMGIYVFSRDVLFDLLNKNP-EY 230 (429)
T ss_pred cCh-hhcccceEEEECCCCcEEEEEECCCccccchhcccccccccccccCCCCceEEEEEEEEEcHHHHHHHHHHCC-Ch
Confidence 542 224566666677778999999987531 2368899999999999977766532 22
Q ss_pred CccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhcc-CCCCCccccCCCCcccccCCCCCCceecCCcccccE
Q 014564 225 NDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT-AHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSI 303 (422)
Q Consensus 225 ~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (422)
.++.+++++.++++.++++++++++|.|+++|++|+++++.++ ...+....+.+..++...+...+|+.+.++.+.++.
T Consensus 231 ~~~~~dil~~l~~~~~v~~~~~~g~w~digt~~~y~~an~~l~~~~~~~~~~~~~~~~i~~~~~~~~~a~~~~~~~~~~~ 310 (429)
T PRK02862 231 TDFGKEIIPEAIRDYKVQSYLFDGYWEDIGTIEAFYEANLALTQQPNPPFSFYDEKAPIYTRARYLPPSKLLDATITESI 310 (429)
T ss_pred hhhHHHHHHHHhccCcEEEEEeCCEEEeCCCHHHHHHHHHHHHcCCCCcccccCCCCceeccCCCCCCccccccEEEeCE
Confidence 3566789999998999999999999999999999999999998 444444566667777777888888888777888999
Q ss_pred EcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCe
Q 014564 304 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 383 (422)
Q Consensus 304 i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~ 383 (422)
||++|.|.++.+.+|+||++|+||++|.|.+|+++|+.+.....+...+.+.+...+.||++|.|.+|+|+++|.||+++
T Consensus 311 ig~~~~i~~~~i~~svi~~~~~Ig~~~~i~~svi~~~~~~p~~~~~~~~~~~~~~~~~Ig~~~~i~~~ii~~~~~i~~~~ 390 (429)
T PRK02862 311 IAEGCIIKNCSIHHSVLGIRSRIESGCTIEDTLVMGADFYESSEEREELRKEGKPPLGIGEGTTIKRAIIDKNARIGNNV 390 (429)
T ss_pred ECCCCEECCcEEEEEEEeCCcEECCCCEEEeeEEecCcccccccccccccccCCcccEECCCCEEEEEEECCCcEECCCc
Confidence 99999997678899999999999999999999999864333333333344444444899999999999999999999999
Q ss_pred EEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 384 IIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 384 ~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
.+.+.+.+.+..+...+++|+.|+++|++++++.+|++|
T Consensus 391 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (429)
T PRK02862 391 RIVNKDNVEEADREDQGFYIRDGIVVVVKNAVIPDGTVI 429 (429)
T ss_pred EEecCCCcccccccccceEeeCCEEEEcCCcCCCCCCCC
Confidence 999988888777777799999998889999999999875
No 4
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=100.00 E-value=6.8e-56 Score=396.20 Aligned_cols=354 Identities=37% Similarity=0.554 Sum_probs=276.9
Q ss_pred cccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
+.+.|+|+||.||.||||+|||..+||||+|++|+ |||++++++|.++|+++|++.++|+.+++..|+.+.| +..
T Consensus 6 ~~~~vkaiILvGG~GTRLrPLT~t~pKPlVpfgn~-pmI~hqieal~nsGi~~I~la~~y~s~sl~~~~~k~y----~~~ 80 (371)
T KOG1322|consen 6 ADQSVKAIILVGGYGTRLRPLTLTRPKPLVPFGNK-PMILHQIEALINSGITKIVLATQYNSESLNRHLSKAY----GKE 80 (371)
T ss_pred cccceeEEEEecCCCceeeceeccCCCcccccCcc-hhhHHHHHHHHhCCCcEEEEEEecCcHHHHHHHHHHh----hhc
Confidence 34789999999999999999999999999999999 9999999999999999999999999998988888876 223
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEe
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
++ |+++...|++ +.|..|++++.++.+...+ +.+|+|++||++++.++++|+++|++++++.|++++
T Consensus 81 lg---Vei~~s~ete----plgtaGpl~laR~~L~~~~------~~~ffVLnsDvi~~~p~~~~vqfH~~~gae~TI~~t 147 (371)
T KOG1322|consen 81 LG---VEILASTETE----PLGTAGPLALARDFLWVFE------DAPFFVLNSDVICRMPYKEMVQFHRAHGAEITIVVT 147 (371)
T ss_pred cc---eEEEEEeccC----CCcccchHHHHHHHhhhcC------CCcEEEecCCeeecCCHHHHHHHHHhcCCceEEEEE
Confidence 43 7888876663 2344455555554444333 248999999999999999999999999999999999
Q ss_pred ecCCCCCcccCCceeeec-cceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeE
Q 014564 165 PMDDSEKPKGKDLKAMAV-DTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKA 243 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~-d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~ 243 (422)
++.+ |+.|++..+|. .++|..|.|||....+.-.++|+|+|++++|+.++. ...++.++++|.+++++++++
T Consensus 148 ~vde---pSkyGvv~~d~~~grV~~F~EKPkd~vsnkinaGiYi~~~~vL~ri~~----~ptSiekEifP~~a~~~~l~a 220 (371)
T KOG1322|consen 148 KVDE---PSKYGVVVIDEDTGRVIRFVEKPKDLVSNKINAGIYILNPEVLDRILL----RPTSIEKEIFPAMAEEHQLYA 220 (371)
T ss_pred eccC---ccccceEEEecCCCceeEehhCchhhhhccccceEEEECHHHHhHhhh----cccchhhhhhhhhhhcCceEE
Confidence 9987 88999999988 689999999998766777889999999999987762 235688999999999999999
Q ss_pred EEecceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCceecCCcccc--cEEcCCCEEccceeeeeEEc
Q 014564 244 YLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVD--SIISHGSFITSSFIEHSVVG 321 (422)
Q Consensus 244 ~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~i~~~~v~~s~ig 321 (422)
+.++|||.|+++|.+|+.+...+++.. +...+.+..||+.+.++++.+ +.+|++|.|++ +|+||
T Consensus 221 ~~l~gfWmDIGqpkdf~~g~~~Yl~s~----------~~~t~~r~~p~~~i~~nvlvd~~~~iG~~C~Ig~----~vvIG 286 (371)
T KOG1322|consen 221 FDLPGFWMDIGQPKDFLTGFSFYLRSL----------PKYTSPRLLPGSKIVGNVLVDSIASIGENCSIGP----NVVIG 286 (371)
T ss_pred EecCchhhhcCCHHHHHHHHHHHHhhC----------cccCCccccCCccccccEeeccccccCCccEECC----CceEC
Confidence 999999999999999999977666543 234455666776665555543 57788899987 89999
Q ss_pred CCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccC---
Q 014564 322 IRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA--- 398 (422)
Q Consensus 322 ~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~--- 398 (422)
++|+|+.+++|++|+++++. +++.++.|..+++|.++.||.|+++.+.+.+++.+.|.
T Consensus 287 ~r~~i~~gV~l~~s~il~~~-------------------~~~~~s~i~s~ivg~~~~IG~~~~id~~a~lG~nV~V~d~~ 347 (371)
T KOG1322|consen 287 PRVRIEDGVRLQDSTILGAD-------------------YYETHSEISSSIVGWNVPIGIWARIDKNAVLGKNVIVADED 347 (371)
T ss_pred CCcEecCceEEEeeEEEccc-------------------eechhHHHHhhhccccccccCceEEecccEeccceEEeccc
Confidence 99999999999999999995 44455555445555555554444444433333333332
Q ss_pred -----CCeEEcCCeEEEcCCcee
Q 014564 399 -----EGFYIRSGVTVILKNSVI 416 (422)
Q Consensus 399 -----~~~~i~~~~~~ig~~~~i 416 (422)
+..++.++..+|-++++|
T Consensus 348 ~vn~g~~l~~ks~~~~v~~~~iI 370 (371)
T KOG1322|consen 348 YVNEGSGLPIKSGITVVLKPAII 370 (371)
T ss_pred ccccceeEEeccceeeccccccc
Confidence 344444444444455444
No 5
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.2e-52 Score=411.11 Aligned_cols=374 Identities=37% Similarity=0.600 Sum_probs=300.4
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|++|+|||||||.||||+|||..+||||+||+|+||||+|+|++|.++|+++++|+++++.+++.+|+++...|+....
T Consensus 1 ~~~m~avILAaG~GtRl~plT~~~PK~llpv~gk~pli~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~- 79 (380)
T PRK05293 1 KKEMLAMILAGGQGTRLGKLTKNIAKPAVPFGGKYRIIDFTLSNCANSGIDTVGVLTQYQPLELNNHIGIGSPWDLDRI- 79 (380)
T ss_pred CCcEEEEEECCCCCcccchhhcCCccceeeeCCceeehhHHHHHHHhCCCCEEEEEecCCHHHHHHHHhCCCcccccCC-
Confidence 5679999999999999999999999999999999789999999999999999999999999999999864211211110
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEee
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~ 165 (422)
...+.++++.+.. ..+.+++||++||+.+++++... .+++|||++||.+++.++.++++.|++.++++++++..
T Consensus 80 -~~~~~i~~~~~~~--~~~~~~~Gta~al~~a~~~l~~~---~~~~~lV~~gD~l~~~d~~~ll~~h~~~~~~~tl~~~~ 153 (380)
T PRK05293 80 -NGGVTILPPYSES--EGGKWYKGTAHAIYQNIDYIDQY---DPEYVLILSGDHIYKMDYDKMLDYHKEKEADVTIAVIE 153 (380)
T ss_pred -CCCEEEeCCcccC--CCCcccCCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCCEEEEEEE
Confidence 0114444211110 11234579999999999998631 13689999999999999999999999888888887755
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhccc-Cce
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANE-QFL 241 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~~~-~~i 241 (422)
.+. +.+..+++..++.+++|.++.+||......+.++|+|+|++++|..+++.... ...++..++++.++++ .++
T Consensus 154 ~~~-~~~~~yG~v~~d~~g~V~~~~eKp~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~i~~l~~~~~~v 232 (380)
T PRK05293 154 VPW-EEASRFGIMNTDENMRIVEFEEKPKNPKSNLASMGIYIFNWKRLKEYLIEDEKNPNSSHDFGKNVIPLYLEEGEKL 232 (380)
T ss_pred cch-hhccccCEEEECCCCcEEEEEeCCCCCCcceeeeEEEEEcHHHHHHHHHHHhhcCCchhhhHHHHHHHHhhcCCeE
Confidence 432 22556666666767899999999865557889999999999988766654321 2235557899988864 689
Q ss_pred eEEEecceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCcee-cCCcccccEEcCCCEEccceeeeeEE
Q 014564 242 KAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVV 320 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s~i 320 (422)
++++.+++|.|++++++|+++++.++...+...++++...+.+.+.+.+|+++ .++.+.++.|+++|.|++ .+.+|+|
T Consensus 233 ~~~~~~g~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~Ig~~~~I~~-~v~~s~i 311 (380)
T PRK05293 233 YAYPFKGYWKDVGTIESLWEANMELLRPENPLNLFDRNWRIYSVNPNLPPQYIAENAKVKNSLVVEGCVVYG-TVEHSVL 311 (380)
T ss_pred EEEEeCCEEEeCCCHHHHHHHHHHHcCCCchhhhcCCCCceecCCcCCCCCEECCCCEEecCEECCCCEEcc-eecceEE
Confidence 99999999999999999999999998877666667777777777888889998 678888999999999974 6779999
Q ss_pred cCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccCCC
Q 014564 321 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 400 (422)
Q Consensus 321 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~ 400 (422)
|++|+|+++|+|++|+++.+ +.|+++|.|.+|+|++++.|++++.+.+...
T Consensus 312 g~~~~I~~~~~i~~svi~~~-------------------~~i~~~~~i~~~ii~~~~~i~~~~~i~~~~~---------- 362 (380)
T PRK05293 312 FQGVQVGEGSVVKDSVIMPG-------------------AKIGENVVIERAIIGENAVIGDGVIIGGGKE---------- 362 (380)
T ss_pred cCCCEECCCCEEECCEEeCC-------------------CEECCCeEEeEEEECCCCEECCCCEEcCCCc----------
Confidence 99999999999999998876 9999999999999999999999999987432
Q ss_pred eEEcCCeEEEcCCceecCCccC
Q 014564 401 FYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 401 ~~i~~~~~~ig~~~~i~~g~~i 422 (422)
...+||+++.|+++++|
T Consensus 363 -----~~~~ig~~~~~~~~~~~ 379 (380)
T PRK05293 363 -----VITVIGENEVIGVGTVI 379 (380)
T ss_pred -----eeEEEeCCCCCCCCcEe
Confidence 12457777888777764
No 6
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.4e-51 Score=405.72 Aligned_cols=378 Identities=35% Similarity=0.639 Sum_probs=292.8
Q ss_pred cccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 5 DARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 5 ~~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
.|.+|+|||||||.|+||+|||..+||||+||+||||||+|+|++|.++|+++|+|++++..+++.+|+.+.|.+. +.
T Consensus 2 ~~~~~~avILAaG~GtRl~PLT~~~PK~llPv~gk~plI~~~L~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~- 79 (407)
T PRK00844 2 AMPKVLAIVLAGGEGKRLMPLTADRAKPAVPFGGSYRLIDFVLSNLVNSGYLRIYVLTQYKSHSLDRHISQTWRLS-GL- 79 (407)
T ss_pred CCCceEEEEECCCCCCccchhhcCCcccceeeCCcceEhHHHHHHHHHCCCCEEEEEeccCHHHHHHHHHhCcCcc-cc-
Confidence 4678999999999999999999999999999999878999999999999999999999999999999997543211 11
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEe
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
...++...+..+. .+..+++||++||+.+++++.+. ..++|||++||++++.++.+++++|+++++++|+++.
T Consensus 80 -~~~~~~~~~~~~~---~~~~~~lGta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~dl~~l~~~h~~~~~~~ti~~~ 152 (407)
T PRK00844 80 -LGNYITPVPAQQR---LGKRWYLGSADAIYQSLNLIEDE---DPDYVVVFGADHVYRMDPRQMVDFHIESGAGVTVAAI 152 (407)
T ss_pred -CCCeEEECCcccC---CCCCcccCCHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHhcCCcEEEEEE
Confidence 1111221111111 11234579999999999998631 0246999999999999999999999988888888876
Q ss_pred ecCCCCCcccCCceeeeccceeeeeeecCCCC-------CCceeeeeEEEEeHHHHHHHHhhhC---CCCCccccchhhh
Q 014564 165 PMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE-------KPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPA 234 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~-------~~~~~~~Giy~~~~~~l~~ll~~~~---~~~~~~~~~~l~~ 234 (422)
..+. +.+..+++..++.+++|..|.+||... .+.++++|+|+|++++|..+++... ....++..++++.
T Consensus 153 ~~~~-~~~~~~Gvv~~d~~g~v~~~~eKp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~dii~~ 231 (407)
T PRK00844 153 RVPR-EEASAFGVIEVDPDGRIRGFLEKPADPPGLPDDPDEALASMGNYVFTTDALVDALRRDAADEDSSHDMGGDIIPR 231 (407)
T ss_pred ecch-HHcccCCEEEECCCCCEEEEEECCCCcccccCCCCCcEEEeEEEEEeHHHHHHHHHHhhcCCcccccchhhHHHH
Confidence 5432 235566777777778999999998532 2468999999999999866665421 1234566789999
Q ss_pred hcccCceeEEEe------------cceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCcee-cCC----
Q 014564 235 SANEQFLKAYLF------------NDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDS---- 297 (422)
Q Consensus 235 l~~~~~i~~~~~------------~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---- 297 (422)
++++.++++|++ +++|.|+++|++|+++++.++........+.+...+.+.....+|+.+ .+.
T Consensus 232 l~~~~~v~~~~~~~~~~~g~n~~~~g~w~Digt~~~y~~a~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (407)
T PRK00844 232 LVERGRAYVYDFSTNEVPGATERDRGYWRDVGTIDAYYDAHMDLLSVHPVFNLYNREWPIYTSSPNLPPAKFVDGGGRVG 311 (407)
T ss_pred HhccCeEEEEEcccccccccccCCCCEEEECCCHHHHHHHHHHHhCCCCccccCCCCCcccccCCCCCCceEecCCCccc
Confidence 999889999976 599999999999999999999865544444455555555556666665 322
Q ss_pred cccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCc
Q 014564 298 KIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNA 377 (422)
Q Consensus 298 ~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~ 377 (422)
.+.+++|+++|.|+++.|.+|+||++|+|+++|.|++++++.+ +.|+++|.|.+|+|+++|
T Consensus 312 ~~~~~~ig~~~~I~~~~i~~svIg~~~~I~~~~~i~~sii~~~-------------------~~i~~~~~i~~~ii~~~~ 372 (407)
T PRK00844 312 SAQDSLVSAGSIISGATVRNSVLSPNVVVESGAEVEDSVLMDG-------------------VRIGRGAVVRRAILDKNV 372 (407)
T ss_pred eEEeCEEcCCCEECCeeeEcCEECCCCEECCCCEEeeeEECCC-------------------CEECCCCEEEeeEECCCC
Confidence 4568999999999877889999999999999999999988766 999999999999999999
Q ss_pred EECCCeEEccCCCcccccccCCCeEEc-CCeEEEcCCcee
Q 014564 378 RIGKNVIIANSEGIQEADRSAEGFYIR-SGVTVILKNSVI 416 (422)
Q Consensus 378 ~i~~~~~i~~~~~~~~~~~~~~~~~i~-~~~~~ig~~~~i 416 (422)
.|++++++++. ...+ +.+.+|. ++.++|++++.|
T Consensus 373 ~i~~~~~i~~~--~~~~---~~~~~~~~~~~~~i~~~~~~ 407 (407)
T PRK00844 373 VVPPGATIGVD--LEED---RRRFTVSEGGIVVVPKGQRV 407 (407)
T ss_pred EECCCCEECCC--cccc---ccceEeccceEEEeCCCCCC
Confidence 99999999773 1111 2245554 666677777654
No 7
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=100.00 E-value=1.4e-50 Score=399.86 Aligned_cols=382 Identities=34% Similarity=0.620 Sum_probs=297.1
Q ss_pred ccc-cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCC
Q 014564 4 RDA-RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG 82 (422)
Q Consensus 4 ~~~-~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~ 82 (422)
++| ++++|||||||.|+||+|||..+||||+|++|+||||+|+|++|.++|+++++|++++..+++.+|+.+.|.+. +
T Consensus 10 ~~~~~~~~aVILAaG~GtRl~pLT~~~PK~llpv~gkp~lI~~~l~~l~~~Gi~~i~vv~~~~~~~i~~~~~~~~~~~-~ 88 (425)
T PRK00725 10 RQLTRDTLALILAGGRGSRLKELTDKRAKPAVYFGGKFRIIDFALSNCINSGIRRIGVLTQYKAHSLIRHIQRGWSFF-R 88 (425)
T ss_pred HhhhcceEEEEECCCCCCcchhhhCCCcceeEEECCEEEEhHHHHHHHHHCCCCeEEEEecCCHHHHHHHHHhhhccc-c
Confidence 344 67999999999999999999999999999999934999999999999999999999999999999997643210 0
Q ss_pred cccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEE
Q 014564 83 VTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITIS 162 (422)
Q Consensus 83 ~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~ 162 (422)
.+ ....+.++++.+.. ....+++||++|++.+.+++... .+++|||++||++++.++.+++++|.+++++++++
T Consensus 89 ~~-~~~~i~i~~~~~~~--~~e~~~lGTa~al~~a~~~l~~~---~~d~~lVl~gD~l~~~dl~~ll~~h~~~~~~~tl~ 162 (425)
T PRK00725 89 EE-LGEFVDLLPAQQRV--DEENWYRGTADAVYQNLDIIRRY---DPKYVVILAGDHIYKMDYSRMLADHVESGADCTVA 162 (425)
T ss_pred cC-CCCeEEEeCCcccC--CCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCeEeccCHHHHHHHHHHcCCCEEEE
Confidence 01 11235555433321 01234579999999999999631 13689999999999999999999999999999888
Q ss_pred EeecCCCCCcccCCceeeeccceeeeeeecCCCC-------CCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchh
Q 014564 163 CLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE-------KPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEII 232 (422)
Q Consensus 163 ~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~-------~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l 232 (422)
+.+.+. +.+..+++..++.+++|..|.+||... ..+++++|+|+|++++|..++++... ...++..+++
T Consensus 163 ~~~~~~-~~~~~yG~v~~d~~~~V~~~~EKp~~~~~~~~~~~~~l~n~GIYi~~~~~L~~~L~~~~~~~~~~~~~~~dii 241 (425)
T PRK00725 163 CLEVPR-EEASAFGVMAVDENDRITAFVEKPANPPAMPGDPDKSLASMGIYVFNADYLYELLEEDAEDPNSSHDFGKDII 241 (425)
T ss_pred EEecch-hhcccceEEEECCCCCEEEEEECCCCccccccCccceEEEeeEEEEeHHHHHHHHHHhhcCCCccchhhHHHH
Confidence 866532 235667777777778999999998532 25789999999999988666654211 2235667899
Q ss_pred hhhcccCceeEEEec-----------ceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCcee-c---C-
Q 014564 233 PASANEQFLKAYLFN-----------DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-D---D- 296 (422)
Q Consensus 233 ~~l~~~~~i~~~~~~-----------~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~- 296 (422)
+.++++.++++|.++ +||.|+++|++|+++++.++...+...++.....+.+.....+|+.+ . +
T Consensus 242 ~~l~~~~~v~~~~~~g~~~~~~~~~~gyw~digt~~~y~~an~~ll~~~~~~~~~~~~~~i~t~~~~~~~~~~~~~~~~~ 321 (425)
T PRK00725 242 PKIVEEGKVYAHPFSDSCVRSDPEEEPYWRDVGTLDAYWQANLDLASVTPELDLYDRNWPIWTYQEQLPPAKFVFDRSGR 321 (425)
T ss_pred HHHhccCcEEEEEecCCccccccccCCeEEECCCHHHHHHHHHHHcCCCchhhccCCCCccccCCCCCCCCeEeccCCCC
Confidence 999999999999885 59999999999999999998765544455455555555556666655 1 2
Q ss_pred -CcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCC
Q 014564 297 -SKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK 375 (422)
Q Consensus 297 -~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~ 375 (422)
+.+.+++|+++|+|.++.+.+|+||++|+|+++|.|++|+++++ +.||++|.|.+|+|++
T Consensus 322 ~~~~~~s~i~~~~~i~~~~i~~svi~~~~~I~~~~~i~~svi~~~-------------------~~I~~~~~i~~~ii~~ 382 (425)
T PRK00725 322 RGMAINSLVSGGCIISGAVVRRSVLFSRVRVNSFSNVEDSVLLPD-------------------VNVGRSCRLRRCVIDR 382 (425)
T ss_pred cceEEeCEEcCCcEEcCccccCCEECCCCEECCCCEEeeeEEcCC-------------------CEECCCCEEeeEEECC
Confidence 34568999999999777889999999999999999999999876 9999999999999999
Q ss_pred CcEECCCeEEccCCCcccccccCCCeEE-cCCeEEEcCCceec
Q 014564 376 NARIGKNVIIANSEGIQEADRSAEGFYI-RSGVTVILKNSVIT 417 (422)
Q Consensus 376 ~~~i~~~~~i~~~~~~~~~~~~~~~~~i-~~~~~~ig~~~~i~ 417 (422)
+|.|+++++++....... ++.+| ..|.++|++++.+.
T Consensus 383 ~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~ 420 (425)
T PRK00725 383 GCVIPEGMVIGEDPEEDA-----KRFRRSEEGIVLVTREMLDK 420 (425)
T ss_pred CCEECCCCEECCCCCCCC-----ceeEecCccEEEECCCcccc
Confidence 999999999975432211 12444 66777788876543
No 8
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.1e-50 Score=389.71 Aligned_cols=349 Identities=28% Similarity=0.433 Sum_probs=271.7
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
.|+|||||||.||||+|||..+||||+||+|| |||+|+|++|.++|+++++++++|..+++.+|+.+.+.++..
T Consensus 1 ~mkavILagG~GtRLrPlT~~~PKPllpI~gk-Pii~~~l~~L~~~Gv~eivi~~~y~~~~i~~~~~d~~~~~~~----- 74 (358)
T COG1208 1 PMKAVILAGGYGTRLRPLTDDRPKPLLPIAGK-PLIEYVLEALAAAGVEEIVLVVGYLGEQIEEYFGDGEGLGVR----- 74 (358)
T ss_pred CceEEEEeCCccccccccccCCCcccceeCCc-cHHHHHHHHHHHCCCcEEEEEeccchHHHHHHHhcccccCCc-----
Confidence 48999999999999999999999999999999 999999999999999999999999999999998764322222
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
+.+..+.. ++||+++|+.+.+++.. ++|++++||.+++.++.+++++|+++.+.+++......
T Consensus 75 --I~y~~e~~---------~lGTag~l~~a~~~l~~------~~f~v~~GDv~~~~dl~~l~~~~~~~~~~~~~~~~~~~ 137 (358)
T COG1208 75 --ITYVVEKE---------PLGTAGALKNALDLLGG------DDFLVLNGDVLTDLDLSELLEFHKKKGALATIALTRVL 137 (358)
T ss_pred --eEEEecCC---------cCccHHHHHHHHHhcCC------CcEEEEECCeeeccCHHHHHHHHHhccCccEEEEEecC
Confidence 33333222 36999999999999873 89999999999999999999999988777888777776
Q ss_pred CCCCcccCCceeeecc-ceeeeeeecCC--CCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCc-eeE
Q 014564 168 DSEKPKGKDLKAMAVD-TTVLGLSKQEA--EEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF-LKA 243 (422)
Q Consensus 168 ~~~k~~~~~~~~~~~d-~~v~~~~~k~~--~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~-i~~ 243 (422)
+ +..+++...+.+ +++.+|.+||. ...++++++|+|+|++++|+ +++. ....++..++++.+++... +++
T Consensus 138 ~---~~~~Gvv~~~~~~~~v~~f~ekp~~~~~~~~~in~Giyi~~~~v~~-~i~~--~~~~~~~~~~~~~l~~~~~~v~~ 211 (358)
T COG1208 138 D---PSEFGVVETDDGDGRVVEFREKPGPEEPPSNLINAGIYIFDPEVFD-YIEK--GERFDFEEELLPALAAKGEDVYG 211 (358)
T ss_pred C---CCcCceEEecCCCceEEEEEecCCCCCCCCceEEeEEEEECHHHhh-hccc--CCcccchhhHHHHHHhCCCcEEE
Confidence 6 445555555544 58999999984 45578999999999999998 3332 2234555679999998876 999
Q ss_pred EEecceEeecCCHHHHHHHHHhccCCCCCccccC-CCCc--ccccCCCCCCceecCCcccccEEcCCCEEccceeeeeEE
Q 014564 244 YLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYD-ATKP--IYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVV 320 (422)
Q Consensus 244 ~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~v~~s~i 320 (422)
+.++++|.|+++|++|+++++.+++......... .... ... +.+.+|+++.. ++.|++++.|++ .|+|
T Consensus 212 ~~~~g~W~dig~p~d~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~gp~~ig~----~~~i~~~~~i~~----~~~i 282 (358)
T COG1208 212 YVFEGYWLDIGTPEDLLEANELLLRGDGKSPLGPIEEPVVIIRS-AYIIGPVVIGP----GAKIGPGALIGP----YTVI 282 (358)
T ss_pred EEeCCeEEeCCCHHHHHHHHHHHHhccccccccccccccccccc-ceEeCCEEECC----CCEECCCCEECC----CcEE
Confidence 9999999999999999999999986442211100 0000 111 33344444322 355555555555 8999
Q ss_pred cCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccCCC
Q 014564 321 GIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEG 400 (422)
Q Consensus 321 g~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~ 400 (422)
|++|+|++++.|.+|+++++ +.|++++.|.+|+||+||.||++. . +.. ..++.+
T Consensus 283 g~~~~I~~~~~i~~Sii~~~-------------------~~i~~~~~i~~sIi~~~~~ig~~~-~-----i~d-~~~g~~ 336 (358)
T COG1208 283 GEGVTIGNGVEIKNSIIMDN-------------------VVIGHGSYIGDSIIGENCKIGASL-I-----IGD-VVIGIN 336 (358)
T ss_pred CCCCEECCCcEEEeeEEEcC-------------------CEECCCCEEeeeEEcCCcEECCce-e-----ecc-eEecCc
Confidence 99999999999999999988 899999999999999999999922 2 445 666667
Q ss_pred eEEcCCeEEEcCCceecCCcc
Q 014564 401 FYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 401 ~~i~~~~~~ig~~~~i~~g~~ 421 (422)
+.+..++ ++++++.+.++.+
T Consensus 337 ~~i~~g~-~~~~~~~~~~~~~ 356 (358)
T COG1208 337 SEILPGV-VVGPGSVVESGEI 356 (358)
T ss_pred eEEcCce-EeCCCccccCccc
Confidence 7776663 4577777776654
No 9
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=100.00 E-value=6.2e-48 Score=376.24 Aligned_cols=350 Identities=24% Similarity=0.397 Sum_probs=267.2
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChH-HHHHHHHhhccCCCCcccC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~-~i~~~l~~~~~~~~~~~~~ 86 (422)
.|+|||||+|+|+||+|||.++||||+||+||||||+|+|++|.++|+++|+|+++++.+ ++++|+.+...|+......
T Consensus 2 ~~~avila~g~gtRL~PLT~~~PKpLlpV~gk~PlIe~~l~~L~~~Gi~~I~iv~~~~~~~~I~~~l~~~~~~~~~~~~~ 81 (369)
T TIGR02092 2 KMSAIINLTESSKNLSPLTKVRPLASLPFGGRYRLIDFPLSNMVNAGIRNVFIFFKNKERQSLFDHLGSGREWDLHRKRD 81 (369)
T ss_pred cEEEEEECCCCCccccccccCCcccccccCCeeeEEEEEhhhhhccCCCEEEEEeCCCcHHHHHHHHhCCCCCCcccccC
Confidence 589999999999999999999999999999997899999999999999999999999887 9999996522222111111
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeec
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
...+.+.. +... ...|+++++..+++++... .+++|||++||.+++.++.+++++|+++++++|+++.+.
T Consensus 82 ~~~~~~~~-e~~~------l~tg~~~a~~~a~~~l~~~---~~~~~lvlnGD~l~~~dl~~ll~~h~~~~a~~tl~~~~v 151 (369)
T TIGR02092 82 GLFVFPYN-DRDD------LSEGGKRYFSQNLEFLKRS---TSEYTVVLNSHMVCNIDLKAVLKYHEETGKDITVVYKKV 151 (369)
T ss_pred cEEEEecc-CCCC------cccChHHHHHHHHHHHHhC---CCCEEEEECCCEEEecCHHHHHHHHHHcCCCEEEEEEec
Confidence 00111111 1111 1126677888888888421 137899999999999999999999999999999988776
Q ss_pred CCCCCcccCCc-eeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC-CCccccchhhhhcccCceeEE
Q 014564 167 DDSEKPKGKDL-KAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT-ANDFGSEIIPASANEQFLKAY 244 (422)
Q Consensus 167 ~~~~k~~~~~~-~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~-~~~~~~~~l~~l~~~~~i~~~ 244 (422)
.. +.+..++. ...+.++++..+.+++.+......++|+|+|++++|..+++..... ...+..++++.++++.+++++
T Consensus 152 ~~-~~~~~~g~vv~~~~~g~v~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~d~i~~~~~~~~v~~~ 230 (369)
T TIGR02092 152 KP-ADASEYDTILRFDESGKVKSIGQNLNPEEEENISLDIYIVSTDLLIELLYECIQRGKLTSLEELIRENLKELNINAY 230 (369)
T ss_pred CH-HHccccCcEEEEcCCCCEEeccccCCCCCcceeeeeEEEEEHHHHHHHHHHHhhcCccccHHHHHHHHhccCcEEEE
Confidence 42 11344432 3344556777775544333345679999999999876666543322 223345788888888899999
Q ss_pred EecceEeecCCHHHHHHHHHhccCCCCCcccc-CCCCcccccCCCCCCcee-cCCcccccEEcCCCEEccceeeeeEEcC
Q 014564 245 LFNDYWEDIGTIRSFFEANLALTAHPPMFSFY-DATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGI 322 (422)
Q Consensus 245 ~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~ 322 (422)
..+++|.|+++|++|+++++.+++.+.....+ .....+.....+.+|+.+ +++.+.++.||++|.|+ +.+.+|+|++
T Consensus 231 ~~~g~w~dIgt~~~l~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~i~~~~Ig~~~~i~-~~v~~s~i~~ 309 (369)
T TIGR02092 231 EYTGYLANINSVKSYYKANMDLLDPQNFQSLFYSSQGPIYTKVKDEPPTYYAENSKVENSLVANGCIIE-GKVENSILSR 309 (369)
T ss_pred ecCCceeEcCCHHHHHHHHHHHhCCcchhhhcCCCCCceeeccCCCCCcEEcCCCEEEEeEEcCCCEEe-eEEeCCEECC
Confidence 99999999999999999999998875332222 122233334445688888 67888899999999997 4688999999
Q ss_pred CcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccC
Q 014564 323 RSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANS 388 (422)
Q Consensus 323 ~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 388 (422)
+|+|+++|+|.+++++++ +.|++++.+.+|+||++++|++++.+.+.
T Consensus 310 ~~~I~~~~~i~~sii~~~-------------------~~I~~~~~i~~~ii~~~~~v~~~~~~~~~ 356 (369)
T TIGR02092 310 GVHVGKDALIKNCIIMQR-------------------TVIGEGAHLENVIIDKDVVIEPNVKIAGT 356 (369)
T ss_pred CCEECCCCEEEeeEEeCC-------------------CEECCCCEEEEEEECCCCEECCCCEeCCC
Confidence 999999999999999877 89999999999999999999999999663
No 10
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=100.00 E-value=3.4e-47 Score=370.30 Aligned_cols=349 Identities=47% Similarity=0.831 Sum_probs=271.4
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|||+++||||+|++|++|||+|+|+.|.++|+++|+|+++++.+++.+|+.+.+.+. +. ....+
T Consensus 1 aiILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~-~~--~~~~~ 77 (361)
T TIGR02091 1 AMVLAGGRGSRLSPLTKRRAKPAVPFGGKYRIIDFPLSNCINSGIRRIGVLTQYKSHSLNRHIQRGWDFD-GF--IDGFV 77 (361)
T ss_pred CEEeCCCCCCccchhhhCCccccceecceeeEeeehhhhhhhcCCceEEEEeccChHHHHHHHHhccCcc-Cc--cCCCE
Confidence 6999999999999999999999999999966999999999999999999999999999999997543211 00 00124
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
++.+..+. ...+.+++||+++++.++.++.+. ..++|++++||++++.++.++++.|.++++++++++.+.+. +
T Consensus 78 ~~~~~~~~--~~~~~~~~Gt~~al~~a~~~~~~~---~~~~~lv~~gD~l~~~~l~~~l~~~~~~~~~~ti~~~~~~~-~ 151 (361)
T TIGR02091 78 TLLPAQQR--ESGTDWYQGTADAVYQNLDLIEDY---DPEYVLILSGDHIYKMDYEKMLDYHIESGADVTIACIPVPR-K 151 (361)
T ss_pred EEeCCccc--CCCCccccCcHHHHHHHHHHHHhc---CCCEEEEecCCEEEcCCHHHHHHHHHHcCCCEEEEEEecCh-H
Confidence 44432221 012234579999999999988531 13689999999999999999999998888778887765432 2
Q ss_pred CcccCCceeeeccceeeeeeecCCCCCCc-------eeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhcccCc
Q 014564 171 KPKGKDLKAMAVDTTVLGLSKQEAEEKPY-------IASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANEQF 240 (422)
Q Consensus 171 k~~~~~~~~~~~d~~v~~~~~k~~~~~~~-------~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~~~~~ 240 (422)
.+..+++..++.++++..|.+||...... ++++|+|+|++++|..+++.... ...++..++++.++++.+
T Consensus 152 ~~~~~g~v~~d~~~~v~~~~ekp~~~~~~~~~~~~~~~~~Giyi~~~~~l~~~l~~~~~~~~~~~~~~~d~l~~l~~~~~ 231 (361)
T TIGR02091 152 EASRFGVMQVDEDGRIVDFEEKPANPPSIPGMPDFALASMGIYIFDKDVLKELLEEDADDPESSHDFGKDIIPRALEEGS 231 (361)
T ss_pred hcccccEEEECCCCCEEEEEECCCCcccccccccccEEeeeEEEEcHHHHHHHHHHHhhcCCcccccHHHHHHHHhhcCc
Confidence 24455666666678899999987543333 89999999999998656654321 123455689999999899
Q ss_pred eeEEEecceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccc-cCCCCCCcee-cCCcccccEEcCCCEEccceeeee
Q 014564 241 LKAYLFNDYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-SRRNLPPSKI-DDSKIVDSIISHGSFITSSFIEHS 318 (422)
Q Consensus 241 i~~~~~~~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s 318 (422)
+++|.++++|.|++++++|+++++.++.+.+....+.....+.+ ...+.+++++ .++.+.++.||++|+|+++.+.+|
T Consensus 232 v~~~~~~~~w~digt~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~ig~~~~I~~~~v~~s 311 (361)
T TIGR02091 232 VQAYLFSGYWRDVGTIDSFWEANMDLVSVVPPFDLYDRKWPIYTYNEFLPPAKFVDSDAQVVDSLVSEGCIISGATVSHS 311 (361)
T ss_pred eEEEeeCCEEEECCCHHHHHHHHHHHhCCCchhhccccCCceecCCCCCCCceEecCCCEEECCEECCCCEECCCEEEcc
Confidence 99999999999999999999999999986643333333333322 2345566666 445677899999999997788899
Q ss_pred EEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEcc
Q 014564 319 VVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 319 ~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
+||++|+|+++|+|++++++++ +.||++|.|.+|+||+++.|++++.++|
T Consensus 312 ~i~~~~~I~~~~~i~~sii~~~-------------------~~v~~~~~l~~~ivg~~~~i~~~~~i~~ 361 (361)
T TIGR02091 312 VLGIRVRIGSGSTVEDSVIMGD-------------------VGIGRGAVIRNAIIDKNVRIGEGVVIGN 361 (361)
T ss_pred EECCCCEECCCCEEeeeEEeCC-------------------CEECCCCEEeeeEECCCCEECCCCEeCC
Confidence 9999999999999998888766 8999999999999999999999998865
No 11
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=6.9e-48 Score=357.25 Aligned_cols=379 Identities=24% Similarity=0.309 Sum_probs=293.3
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
+++.+||||||.||||. +.+||-|-|++|| ||++|+|+.+...+.+++++|+++..+++++.+.+.. ...|
T Consensus 1 ~~~~~vILAAGkGTRMk---S~lPKVLH~vaGk-pMl~hVi~~a~~l~~~~i~vVvGh~ae~V~~~~~~~~----~v~~- 71 (460)
T COG1207 1 MSLSAVILAAGKGTRMK---SDLPKVLHPVAGK-PMLEHVIDAARALGPDDIVVVVGHGAEQVREALAERD----DVEF- 71 (460)
T ss_pred CCceEEEEecCCCcccc---CCCcccchhccCc-cHHHHHHHHHhhcCcceEEEEEcCCHHHHHHHhcccc----CceE-
Confidence 35789999999999997 7899999999999 9999999999999999999999999999998886421 1222
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHh-cCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLF-EDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l-~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
++..+ ++||++|++++++++ ++. +.++||++||. |+..+ |.++++.|.+.++.++++.
T Consensus 72 -----v~Q~e----------qlGTgHAV~~a~~~l~~~~----~g~vLVl~GD~PLit~~TL~~L~~~~~~~~~~~tvLt 132 (460)
T COG1207 72 -----VLQEE----------QLGTGHAVLQALPALADDY----DGDVLVLYGDVPLITAETLEELLAAHPAHGAAATVLT 132 (460)
T ss_pred -----EEecc----------cCChHHHHHhhhhhhhcCC----CCcEEEEeCCcccCCHHHHHHHHHhhhhcCCceEEEE
Confidence 23222 359999999999999 432 45799999999 65554 8889999999999999999
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecC-C---CCCCceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhc
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQE-A---EEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASA 236 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~-~---~~~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~ 236 (422)
....+ |++|+..+.+.+++|+.|.|+. . +..-..+++|+|+|+...|.++|.+...+ .+.|..|++..+-
T Consensus 133 ~~~~d---P~GYGRIvr~~~g~V~~IVE~KDA~~eek~I~eiNtGiy~f~~~~L~~~L~~l~nnNaqgEYYLTDvI~i~~ 209 (460)
T COG1207 133 AELDD---PTGYGRIVRDGNGEVTAIVEEKDASEEEKQIKEINTGIYAFDGAALLRALPKLSNNNAQGEYYLTDVIAIAR 209 (460)
T ss_pred EEcCC---CCCcceEEEcCCCcEEEEEEcCCCCHHHhcCcEEeeeEEEEcHHHHHHHHHHhccccccCcEeHHHHHHHHH
Confidence 98888 9999988888889999987653 2 22346789999999998777777665322 2333344444333
Q ss_pred -ccCceeEEEecce--EeecCCHHHHHHHHHhccCCC-------------CCccccCCCCcccccCCCCC----------
Q 014564 237 -NEQFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP-------------PMFSFYDATKPIYTSRRNLP---------- 290 (422)
Q Consensus 237 -~~~~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~-------------~~~~~~~~~~~~~~~~~~~~---------- 290 (422)
++.++.++..+++ ..-+++-.+|..+.+.+.+|. |...+++.+..+...+.|.|
T Consensus 210 ~~g~~V~a~~~~d~~E~~GVN~R~qLa~~e~~~q~r~~~~~m~~GVtl~dP~t~~i~~dv~ig~DvvI~p~v~l~G~t~i 289 (460)
T COG1207 210 NEGEKVRAVHVDDEEEVLGVNDRVQLAEAERIMQRRIAEKLMLAGVTLIDPATTYIRGDVEIGRDVVIEPNVILEGNTVI 289 (460)
T ss_pred hCCCeEEEEecCchHHhcCcCcHHHHHHHHHHHHHHHHHHHHHcCcEEeCCCeEEEcCcEEECCceEEecCcEEeeeEEE
Confidence 2578888888755 567889899988888776653 22333333344444444444
Q ss_pred --Ccee-cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECC-----ccccchhhHHhhhcCCCcceE
Q 014564 291 --PSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVASLLAEGRVPVG 361 (422)
Q Consensus 291 --~~~~-~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 361 (422)
++.+ .++.+.++.|++++.|.. +.++.|.||++|.|||+++|++.+.+++ +|+|. +.+.+..+ +.
T Consensus 290 g~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~~~VGPfA~LRPg~~L~~~~hIGNFVEv--K~a~ig~g----sK 363 (460)
T COG1207 290 GDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEGATVGPFARLRPGAVLGADVHIGNFVEV--KKATIGKG----SK 363 (460)
T ss_pred CCceEECCCcEEEeeEEcCCCEEEecceeeccEecCCcccCCccccCCcCcccCCCeEeeeEEE--ecccccCC----cc
Confidence 4444 356666788888888886 6778899999999999999988776665 56663 33444444 56
Q ss_pred eCCCcEEeeeEeCCCcEECCCeEEccCCCccccc-ccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 362 IGENTKIKECIIDKNARIGKNVIIANSEGIQEAD-RSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 362 i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~-~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
++|-++|.++.||.+|.||+|++++|+++..+.+ .||+++|||+++.. ||+++.|++||+|
T Consensus 364 a~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiGSns~LVAPV~IGd~a~iaAGStI 430 (460)
T COG1207 364 AGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 430 (460)
T ss_pred ccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEccCCcEEeeEEecCCcEEcccceE
Confidence 7799999999999999999999999999999976 99999999999764 8999999999986
No 12
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=100.00 E-value=2.8e-44 Score=348.49 Aligned_cols=234 Identities=21% Similarity=0.328 Sum_probs=189.4
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeec-ChHHHHHHHHhhccCCCCcccCCC
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~-~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
+|||||||.|+||+|||...||||+|++|+ |||+|+|++|.++|++++++++++ ..+++.+|+.+. ..|+..
T Consensus 1 kaiIlAaG~gtRl~plt~~~pK~l~pv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~i~~~~~~~------~~~~~~ 73 (353)
T TIGR01208 1 KALILAAGKGTRLRPLTFTRPKQLIPVANK-PILQYAIEDLAEAGITDIGIVVGPVTGEEIKEIVGEG------ERFGAK 73 (353)
T ss_pred CEEEECCcCcCccCccccCCCccccEECCE-eHHHHHHHHHHHCCCCEEEEEeCCCCHHHHHHHHhcc------cccCce
Confidence 689999999999999999999999999999 999999999999999999999999 888999988642 223322
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCC
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
+.++.... +.|++++++.+++++. .++|++++||++++.++.+++++|+++++++++++.+..+
T Consensus 74 -~~~~~~~~---------~~G~~~al~~a~~~l~------~~~~li~~gD~~~~~~l~~l~~~~~~~~~d~ti~~~~~~~ 137 (353)
T TIGR01208 74 -ITYIVQGE---------PLGLAHAVYTARDFLG------DDDFVVYLGDNLIQDGISRFVKSFEEKDYDALILLTKVRD 137 (353)
T ss_pred -EEEEECCC---------CCCHHHHHHHHHHhcC------CCCEEEEECCeecCccHHHHHHHHHhcCCCcEEEEEECCC
Confidence 22222111 3599999999999885 3789999999999999999999999888898888876654
Q ss_pred CCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCC--CCCccccchhhhhccc-CceeEEE
Q 014564 169 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFP--TANDFGSEIIPASANE-QFLKAYL 245 (422)
Q Consensus 169 ~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~--~~~~~~~~~l~~l~~~-~~i~~~~ 245 (422)
|..+++..++.+++|.+|.+||....+.+.++|+|+|++.+++ .++...+ ..+.+..++++.++++ .++++|.
T Consensus 138 ---~~~~g~~~~~~~~~v~~~~ekp~~~~~~~~~~Giy~~~~~l~~-~l~~~~~~~~~e~~l~d~l~~l~~~g~~v~~~~ 213 (353)
T TIGR01208 138 ---PTAFGVAVLEDGKRILKLVEKPKEPPSNLAVVGLYMFRPLIFE-AIKNIKPSWRGELEITDAIQWLIEKGYKVGGSK 213 (353)
T ss_pred ---hhhCeEEEEcCCCcEEEEEECCCCCCccceEEEEEEECHHHHH-HHHhcCCCCCCcEEHHHHHHHHHHcCCeEEEEE
Confidence 5555555555456799999998766678899999999997776 4443322 1233346788888865 5899999
Q ss_pred ecceEeecCCHHHHHHHHHhccCCC
Q 014564 246 FNDYWEDIGTIRSFFEANLALTAHP 270 (422)
Q Consensus 246 ~~~~~~di~t~~~~~~a~~~ll~~~ 270 (422)
++++|.|+++|++|+++++.++.+.
T Consensus 214 ~~g~w~digt~~dl~~a~~~ll~~~ 238 (353)
T TIGR01208 214 VTGWWKDTGKPEDLLDANRLILDEV 238 (353)
T ss_pred eCcEEEeCCCHHHHHHHHHHHHhhc
Confidence 9999999999999999999998753
No 13
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-42 Score=348.41 Aligned_cols=386 Identities=20% Similarity=0.267 Sum_probs=262.6
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|.+++|||||||.|+||++ ..||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+++.+.. .
T Consensus 1 m~~~~avIlAaG~g~Rl~~---~~pK~l~pi~g~-pli~~~l~~l~~~gi~~iiiv~~~~~~~i~~~~~~~~------~- 69 (459)
T PRK14355 1 MNNLAAIILAAGKGTRMKS---DLVKVMHPLAGR-PMVSWPVAAAREAGAGRIVLVVGHQAEKVREHFAGDG------D- 69 (459)
T ss_pred CCcceEEEEcCCCCcccCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCeEEEEECCCHHHHHHHhccCC------c-
Confidence 4578999999999999973 689999999999 9999999999999999999999998888888875321 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++.... .+|++++++.+++++++. .++||+++||. +...++.++++.|.+.+++++++.
T Consensus 70 ----i~~~~~~~---------~~Gt~~al~~a~~~l~~~----~~~vlv~~gD~p~~~~~~i~~l~~~~~~~~~~~~v~~ 132 (459)
T PRK14355 70 ----VSFALQEE---------QLGTGHAVACAAPALDGF----SGTVLILCGDVPLLRAETLQGMLAAHRATGAAVTVLT 132 (459)
T ss_pred ----eEEEecCC---------CCCHHHHHHHHHHHhhcc----CCcEEEEECCccCcCHHHHHHHHHHHHhcCCcEEEEE
Confidence 22322111 259999999999998631 37899999998 445668999999988778888777
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCC----CCCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhc
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAE----EKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASA 236 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~----~~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~ 236 (422)
.+..+ |..++...++.++++.++.+|+.. ..++++++|+|+|+++++.+.++.... ..+.+..++++.++
T Consensus 133 ~~~~~---~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~e~~~~d~i~~l~ 209 (459)
T PRK14355 133 ARLEN---PFGYGRIVRDADGRVLRIVEEKDATPEERSIREVNSGIYCVEAAFLFDAIGRLGNDNAQGEYYLTDIVAMAA 209 (459)
T ss_pred EEcCC---CCcCCEEEEcCCCCEEEEEEcCCCChhHhhccEEEEEEEEEeHHHHHHHHHHcCccccCCceeHHHHHHHHH
Confidence 66544 555555556667789999887532 124788999999999976555654322 12344568899888
Q ss_pred cc-CceeEEEecce--EeecCCHHHHHHHHHhccCCC------CCccccCCCC-cccccCCCCCCcee-cCCccc-ccEE
Q 014564 237 NE-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYDATK-PIYTSRRNLPPSKI-DDSKIV-DSII 304 (422)
Q Consensus 237 ~~-~~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~------~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~-~~~i 304 (422)
++ .++.+|+++++ |.++++|++|+++++.++... .....+++.. .+.+.+.+++++.+ .++.+. ++.|
T Consensus 210 ~~g~~v~~~~~~~~~~~~~i~~~~~~~~a~~~l~~~~~~~~~~~~~~~i~~~~~~i~~~v~ig~~~~I~~~~~I~~~~~I 289 (459)
T PRK14355 210 AEGLRCLAFPVADPDEIMGVNDRAQLAEAARVLRRRINRELMLAGVTLIDPETTYIDRGVVIGRDTTIYPGVCISGDTRI 289 (459)
T ss_pred HCCCeEEEEEcCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCceEECCCeEEcCCCEEeCCcEEeCCCEE
Confidence 76 57999999987 899999999999987555421 1112334432 34444455555555 344443 4666
Q ss_pred cCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHh---hhcCC-------CcceEeCCCc------E
Q 014564 305 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVAS---LLAEG-------RVPVGIGENT------K 367 (422)
Q Consensus 305 ~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~---~~~~~-------~~~~~i~~~~------~ 367 (422)
|++|.|+ ++.+.+|+||++|+|+++|.|.++.+.++..+...+.+.. +..+. ...+.||.++ .
T Consensus 290 g~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~~~~~~~ig~~~~~~~~~~ 369 (459)
T PRK14355 290 GEGCTIEQGVVIKGCRIGDDVTVKAGSVLEDSVVGDDVAIGPMAHLRPGTELSAHVKIGNFVETKKIVMGEGSKASHLTY 369 (459)
T ss_pred CCCCEECCCCEEeCCEEcCCCEECCCeEEeCCEECCCCEECCCCEECCCCEeCCCCEECCCccccCCEECCCceeeeecc
Confidence 6666666 3455566666666666666665543322211100000000 00000 0002233332 3
Q ss_pred EeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 368 IKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 368 i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.+++||++|.||+++++.+.++... ...+|++++|+.++.+ ||++++|++|++|
T Consensus 370 ig~~~ig~~~~ig~~~~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~a~s~v 430 (459)
T PRK14355 370 LGDATIGRNVNIGCGTITCNYDGVKKHRTVIEDDVFVGSDVQFVAPVTVGRNSLIAAGTTV 430 (459)
T ss_pred ccCCEECCCCEEccceeecCcCCccccCcEecCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 34578889999999988887766655 3588999999888754 7888888888864
No 14
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=4.7e-42 Score=345.66 Aligned_cols=385 Identities=17% Similarity=0.223 Sum_probs=271.8
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
+.++.|||||||.|+||+| ..||+|+|++|+ |||+|+|++|.++|++++++++++..+++.+++.... ..
T Consensus 2 ~~~~~avILAaG~gtRm~~---~~pK~llpi~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~---~~--- 71 (482)
T PRK14352 2 PRPTAVIVLAAGAGTRMRS---DTPKVLHTLAGR-SMLGHVLHAAAGLAPQHLVVVVGHDRERVAPAVAELA---PE--- 71 (482)
T ss_pred CCCceEEEEcCCCCCcCCC---CCCceeceeCCc-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHHhhccC---Cc---
Confidence 3467899999999999986 589999999999 9999999999999999999999988888888775321 11
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-ee-ecChHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++.... ..|++++++.++.++.. ..+++||+++||+ ++ ..++.++++.|++.++.++++.
T Consensus 72 ----~~~~~~~~---------~~Gt~~si~~al~~l~~---~~~~~vlV~~gD~P~~~~~~l~~li~~~~~~~~~~~v~~ 135 (482)
T PRK14352 72 ----VDIAVQDE---------QPGTGHAVQCALEALPA---DFDGTVVVTAGDVPLLDGETLADLVATHTAEGNAVTVLT 135 (482)
T ss_pred ----cEEEeCCC---------CCCcHHHHHHHHHHhcc---CCCCeEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEEEE
Confidence 22222111 25899999999998853 1236799999998 44 4558999999988777777776
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCC----CceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhc
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEK----PYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASA 236 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~----~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~ 236 (422)
.+..+ |..++....+.+++|.++.+|+.... ..++++|+|+|++++|..+++..... .+.+..++++.++
T Consensus 136 ~~~~~---p~~yg~~~~~~~g~V~~~~EKp~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~ 212 (482)
T PRK14352 136 TTLDD---PTGYGRILRDQDGEVTAIVEQKDATPSQRAIREVNSGVYAFDAAVLRSALARLSSDNAQGELYLTDVLAIAR 212 (482)
T ss_pred eecCC---CCCCCEEEECCCCCEEEEEECCCCCHHHhhcceEEEEEEEEEHHHHHHHHHhhCccccCCcEeHHHHHHHHH
Confidence 65554 66666555666789999999876321 34689999999999987766543321 2344578899888
Q ss_pred cc-CceeEEEecceEeecCCHHHH------HHHHHhccCCC---------CCcc------------ccCCCCcccccCCC
Q 014564 237 NE-QFLKAYLFNDYWEDIGTIRSF------FEANLALTAHP---------PMFS------------FYDATKPIYTSRRN 288 (422)
Q Consensus 237 ~~-~~i~~~~~~~~~~di~t~~~~------~~a~~~ll~~~---------~~~~------------~~~~~~~~~~~~~~ 288 (422)
++ .++++|+++++|.|+++++.+ ..++..++... +... .+++.+.+.+.+.+
T Consensus 213 ~~g~~V~~~~~~g~w~~~g~~~~~~~~~a~~~~~~~~~~~~~~~g~~~~~~~~~~i~~~v~ig~~~~I~~~~~i~~~v~I 292 (482)
T PRK14352 213 EAGHRVGAHHADDSAEVAGVNDRVQLAALGAELNRRIVEAWMRAGVTIVDPATTWIDVDVTIGRDVVIHPGTQLLGRTTI 292 (482)
T ss_pred HCCCeEEEEecCCcceEEcCCCHHHHHHHHHHHHHHHHHHHHhCCCEEECCCeEEEeCCEEECCCcEEeCCcEEeecCEE
Confidence 76 589999999999999999887 44544433221 1111 12222333333334
Q ss_pred CCCcee-cCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccc-cchhhHH-hhhcCCCcceEeCCC
Q 014564 289 LPPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFY-ETDAEVA-SLLAEGRVPVGIGEN 365 (422)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~ 365 (422)
++++.+ .++.+.+++|+++|.|+++.+.+++||+++.||+++.+..+++++++.. ...++.. ++..++ +.|++.
T Consensus 293 g~~~~I~~~~~i~~~~Ig~~~~i~~~~~~~~iIg~~~~Ig~~~~i~~~~vIg~~~~ig~~~~~~~~~I~~~---~~i~~~ 369 (482)
T PRK14352 293 GEDAVVGPDTTLTDVTVGEGASVVRTHGSESEIGAGATVGPFTYLRPGTVLGEEGKLGAFVETKNATIGRG---TKVPHL 369 (482)
T ss_pred CCCCEECCCCEEecCEECCCCEEeeeeeecCEEcCCCEECCCeEecCCcEEcCCCEECCcEEEcccEECCC---cEEccC
Confidence 444444 3455566777777777665667888888888888888876666665311 0111101 111122 566777
Q ss_pred cEEeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 366 TKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 366 ~~i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.+.+|+||++|.||+++++.+.++... ...+|++++|+.++++ ||++++|++|++|
T Consensus 370 ~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i~~~~~Ig~~~~igags~v 432 (482)
T PRK14352 370 TYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMFVAPVTVGDGAYTGAGTVI 432 (482)
T ss_pred ceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEEeCCCEECCCcEECCCCEE
Confidence 7778899999999999999987655444 3588888888888763 8899999999864
No 15
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-41 Score=339.14 Aligned_cols=371 Identities=23% Similarity=0.304 Sum_probs=273.4
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
|+++|||||||.|+||+| .+||+|+|++|+ |||+|+++.|.++ +++++|++++..+++++++.+.+ .+
T Consensus 1 m~~~aiIlAaG~GtRl~~---~~pK~Llpi~gk-Pli~~~i~~l~~~-~~~i~Ivv~~~~~~i~~~~~~~~---~~---- 68 (430)
T PRK14359 1 MKLSIIILAAGKGTRMKS---SLPKVLHTICGK-PMLFYILKEAFAI-SDDVHVVLHHQKERIKEAVLEYF---PG---- 68 (430)
T ss_pred CCccEEEEcCCCCccCCC---CCCceeCEECCc-cHHHHHHHHHHHc-CCcEEEEECCCHHHHHHHHHhcC---Cc----
Confidence 458999999999999986 799999999999 9999999999987 78999999999999999886532 11
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeec
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
+.++..... .+.|++++++.+.. . .++||+++||..+. ..+.++.+.+.++++++.+.+.
T Consensus 69 ---v~~~~~~~~-------~~~gt~~al~~~~~--~------~d~vlv~~gD~p~~--~~~~l~~l~~~~~~~~v~~~~~ 128 (430)
T PRK14359 69 ---VIFHTQDLE-------NYPGTGGALMGIEP--K------HERVLILNGDMPLV--EKDELEKLLENDADIVMSVFHL 128 (430)
T ss_pred ---eEEEEecCc-------cCCCcHHHHhhccc--C------CCeEEEEECCccCC--CHHHHHHHHhCCCCEEEEEEEc
Confidence 334332211 13589999977421 1 48999999998332 1245555666667777777666
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhccc-
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASANE- 238 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~~~- 238 (422)
++ |..++.... .++++..+.+++... ..++.++|+|+|++++|..+++.... ..+.+..++++.+++.
T Consensus 129 ~~---~~~~g~v~~-d~g~v~~i~e~~~~~~~~~~~~~~~~Giyif~~~~l~~~~~~~~~~~~~~e~~l~d~i~~l~~~g 204 (430)
T PRK14359 129 AD---PKGYGRVVI-ENGQVKKIVEQKDANEEELKIKSVNAGVYLFDRKLLEEYLPLLKNQNAQKEYYLTDIIALAIEKG 204 (430)
T ss_pred CC---CccCcEEEE-cCCeEEEEEECCCCCcccccceEEEeEEEEEEHHHHHHHHHhcCcccccCceehhhHHHHHHHcC
Confidence 54 544544333 467899998776421 23678999999999999866554321 1234456788877765
Q ss_pred CceeEEEec-ceEeecCCHHHHHHHHHhccCCCC-------------CccccCCCCcccccCCCCCCcee-cCCcccccE
Q 014564 239 QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSI 303 (422)
Q Consensus 239 ~~i~~~~~~-~~~~di~t~~~~~~a~~~ll~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 303 (422)
.++.++..+ ++|.|+++|+||..++..+..+.. ...++.+++.+.+.+.+++++.+ .++.++++.
T Consensus 205 ~~v~~~~~~~~~w~dI~t~~dl~~a~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~g~~~ig~~~~I~~~~~i~~~~ 284 (430)
T PRK14359 205 ETIKAVFVDEENFMGVNSKFELAKAEEIMQERIKKNAMKQGVIMRLPETIYIESGVEFEGECELEEGVRILGKSKIENSH 284 (430)
T ss_pred CeEEEEEcCCCEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEecCCeeEECCCcEEcCceEECCCCEECCCeEEEeeE
Confidence 789999887 589999999999999866554321 12234455556666677777777 567778899
Q ss_pred EcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCe
Q 014564 304 ISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 383 (422)
Q Consensus 304 i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~ 383 (422)
|+++|.|+++.+.+|+||++++|++++.|+++ .+|++ ++. +. ++. ++ +.||+.+.|.+|+||++|.||+++
T Consensus 285 i~~~~~I~~~~i~~~~ig~~~~i~~~~~i~~~-~ig~~-~~i--~~-~~~-~~---~~i~~~~~i~d~~Ig~~~~ig~~~ 355 (430)
T PRK14359 285 IKAHSVIEESIIENSDVGPLAHIRPKSEIKNT-HIGNF-VET--KN-AKL-NG---VKAGHLSYLGDCEIDEGTNIGAGT 355 (430)
T ss_pred ECCCCEEeccEEeCCEECCCCEECCCcEEecc-EEcCc-EEE--cc-cEe-cc---ccccccccccCCEECCCCEECCCc
Confidence 99999998888899999999999999999754 44443 110 11 122 33 789999999999999999999999
Q ss_pred EEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 384 IIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 384 ~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
++.+.++..+ ...+|++++||.++.+ ||++++|++|++|
T Consensus 356 ~~~~~~~~~~~~~~ig~~~~ig~~~~i~~~~~ig~~~~i~~g~~v 400 (430)
T PRK14359 356 ITCNYDGKKKHKTIIGKNVFIGSDTQLVAPVNIEDNVLIAAGSTV 400 (430)
T ss_pred eEccccCccCcCCEECCCeEEcCCCEEeCCcEECCCCEECCCCEE
Confidence 9998766555 3588999999888764 8888999998864
No 16
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.2e-41 Score=341.43 Aligned_cols=382 Identities=22% Similarity=0.280 Sum_probs=252.4
Q ss_pred ccccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCc
Q 014564 4 RDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGV 83 (422)
Q Consensus 4 ~~~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~ 83 (422)
++.++|+|||||||.|+||+| ..||+|+|++|+ |||+|+|++|.++|+++++|+++++.+++++++.. .+
T Consensus 3 ~~~~~~~avILAaG~gtRl~~---~~pK~llpi~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~-----~~- 72 (481)
T PRK14358 3 EQTRPLDVVILAAGQGTRMKS---ALPKVLHPVAGR-PMVAWAVKAARDLGARKIVVVTGHGAEQVEAALQG-----SG- 72 (481)
T ss_pred cccCCceEEEECCCCCCcCCC---CCCceecEECCe-eHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcc-----CC-
Confidence 344689999999999999986 489999999999 99999999999999999999999988888887742 11
Q ss_pred ccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEE
Q 014564 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITI 161 (422)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl 161 (422)
+.++.... +.|++++++.+.+++... +++|++++||+ +...++.++++.|.++++++|+
T Consensus 73 ------i~~v~~~~---------~~Gt~~al~~~~~~l~~~----~~~~lV~~gD~P~i~~~~l~~ll~~~~~~~~~~ti 133 (481)
T PRK14358 73 ------VAFARQEQ---------QLGTGDAFLSGASALTEG----DADILVLYGDTPLLRPDTLRALVADHRAQGSAMTI 133 (481)
T ss_pred ------cEEecCCC---------cCCcHHHHHHHHHHhhCC----CCcEEEEeCCeeccCHHHHHHHHHHHHhcCCeEEE
Confidence 33433221 359999999999888521 35799999998 4455689999999888888888
Q ss_pred EEeecCCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhC---CCCCccccchhhh
Q 014564 162 SCLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRF---PTANDFGSEIIPA 234 (422)
Q Consensus 162 ~~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~---~~~~~~~~~~l~~ 234 (422)
++.+.++ +..|++..++.+++|.+|.||+... ...++++|+|+|++++++ +++... ...+.+..|+++.
T Consensus 134 ~~~~~~~---~~~yG~v~~d~~g~v~~~~Ek~~~~~~~~~~~~~n~Giyi~~~~~~~-~~~~i~~~~~~ge~~l~d~i~~ 209 (481)
T PRK14358 134 LTGELPD---ATGYGRIVRGADGAVERIVEQKDATDAEKAIGEFNSGVYVFDARAPE-LARRIGNDNKAGEYYLTDLLGL 209 (481)
T ss_pred EEEEcCC---CCCceEEEECCCCCEEEEEECCCCChhHhhCCeEEEEEEEEchHHHH-HHHhcCCCccCCeEEHHHHHHH
Confidence 8877665 5556666677778999999987532 134689999999966532 333321 1223445688888
Q ss_pred hccc-CceeEEEecceEeecCCHHHHHHHHHh-ccCCC-------CCcccc-------------------CCCCcccccC
Q 014564 235 SANE-QFLKAYLFNDYWEDIGTIRSFFEANLA-LTAHP-------PMFSFY-------------------DATKPIYTSR 286 (422)
Q Consensus 235 l~~~-~~i~~~~~~~~~~di~t~~~~~~a~~~-ll~~~-------~~~~~~-------------------~~~~~~~~~~ 286 (422)
++++ .++.+|++.++|..++.-.++..+++. ++++. .....+ .+.+.+.+++
T Consensus 210 ~~~~g~~i~~~~~~~~~~~i~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~I~~~~~I~~~v 289 (481)
T PRK14358 210 YRAGGAQVRAFKLSDPDEVLGANDRAGLAQLEATLRRRINEAHMKAGVTLQDPGTILIEDTVTLGRDVTIEPGVLLRGQT 289 (481)
T ss_pred HHHCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeeeccCCcEECCCCEEeCCcEEeCCc
Confidence 8876 579999998887767665554333322 22110 001111 1122222222
Q ss_pred CCCCCcee-cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccch-hh--HHhhhcCCCcceE
Q 014564 287 RNLPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETD-AE--VASLLAEGRVPVG 361 (422)
Q Consensus 287 ~~~~~~~~-~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~ 361 (422)
.+++++.+ .++.+.++.|+++|.|+. +.+.+++||+++.|++++.|...++++++...-. ++ .+.++++ +.
T Consensus 290 ~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~ig~~~~ig~~~~i~~~~~Ig~~~~Ig~~~~i~~~~i~~~----~~ 365 (481)
T PRK14358 290 RVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAEVGAGSDVGPFARLRPGTVLGEGVHIGNFVETKNARLDAG----VK 365 (481)
T ss_pred EECCCCEECCCCEEeeeEECCCCEEeecceecCCeEeCceEECCccEEcCCcEECCCCEECCCEEECCceecCC----cc
Confidence 22333333 234444455555555552 3444555555555555555554444444211000 00 1112222 45
Q ss_pred eCCCcEEeeeEeCCCcEECCCeEEccCCCcccc-cccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 362 IGENTKIKECIIDKNARIGKNVIIANSEGIQEA-DRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 362 i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~-~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+|+.+.+.+++||++|.||+++++.|..+.... ..+|++++|+.++++ ||++++|++|++|
T Consensus 366 ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~i~~gs~v 432 (481)
T PRK14358 366 AGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTTLIAPRVVGDAAFIAAGSAV 432 (481)
T ss_pred cCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCEEcCCcEECCCCEECCCCEE
Confidence 555666678999999999999999987665443 488999999888754 8888899888864
No 17
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=100.00 E-value=3.5e-41 Score=338.00 Aligned_cols=376 Identities=21% Similarity=0.263 Sum_probs=259.8
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||+| ..||+|+|++|+ |||+|+|+.|.++|+++++|+++++.+++++++.+. +
T Consensus 1 m~aiIlAaG~g~R~~~---~~pK~l~~i~gk-pli~~~l~~l~~~g~~~iiiv~~~~~~~i~~~~~~~---------~-- 65 (451)
T TIGR01173 1 LSVVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVIDAARALGPQKIHVVYGHGAEQVRKALANR---------D-- 65 (451)
T ss_pred CeEEEEcCCCCcccCC---CCchhhceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcCC---------C--
Confidence 7899999999999996 699999999999 999999999999999999999999888888877531 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-ee-ecChHHHHHHHHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
+.++.... +.|++++++.+++++++ .++|++++||. ++ ..++..+++.|.+. ..++++.+.
T Consensus 66 -i~~~~~~~---------~~G~~~ai~~a~~~l~~-----~~~~lv~~~D~p~i~~~~~~~l~~~~~~~--~~~~~~~~~ 128 (451)
T TIGR01173 66 -VNWVLQAE---------QLGTGHAVLQALPFLPD-----DGDVLVLYGDVPLISAETLERLLEAHRQN--GITLLTAKL 128 (451)
T ss_pred -cEEEEcCC---------CCchHHHHHHHHHhcCC-----CCcEEEEECCcCCcCHHHHHHHHHHHhhC--CEEEEEEec
Confidence 22322211 24899999999998863 36899999998 43 44588888888654 355666555
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhccc-
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANE- 238 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~~~- 238 (422)
++ +..++...++.++++..+.+|+... ..+++++|+|+|++++|..+++..... .+.+..++++.++++
T Consensus 129 ~~---~~~~g~v~~d~~g~v~~~~ek~~~~~~~~~~~~~~~G~y~~~~~~l~~~l~~~~~~~~~~e~~~~~~~~~l~~~g 205 (451)
T TIGR01173 129 PD---PTGYGRIIRENDGKVTAIVEDKDANAEQKAIKEINTGVYVFDGAALKRWLPKLSNNNAQGEYYLTDVIALAVADG 205 (451)
T ss_pred CC---CCCCCEEEEcCCCCEEEEEEcCCCChHHhcCcEEEEEEEEEeHHHHHHHHHhcccccccCcEeHHHHHHHHHHCC
Confidence 43 4445555566667899998875421 135788999999999876666543221 223446788888865
Q ss_pred CceeEEEecce--EeecCCHHHHHHHHHhccCCC-------------CC------------ccccCCCCcccccCCCCCC
Q 014564 239 QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP-------------PM------------FSFYDATKPIYTSRRNLPP 291 (422)
Q Consensus 239 ~~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~-------------~~------------~~~~~~~~~~~~~~~~~~~ 291 (422)
.++++|+++++ |.++++|++|..++..+..+. +. ...+++.+.+.+.+.++++
T Consensus 206 ~~v~~~~~~~~~~~~~i~t~~dl~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~ 285 (451)
T TIGR01173 206 ETVRAVQVDDSDEVLGVNDRLQLAQLERILQRRIAKKLLLAGVTLRDPARFDIRGTVEIGRDVEIDPNVILEGKVKIGDD 285 (451)
T ss_pred CeEEEEEcCChhheecCCCHHHHHHHHHHHHHHHHHHHHhCCCEEecCCeEEECCccEECCCCEEcCCeEEeCceEECCC
Confidence 57999999887 899999999988765443211 00 0122233333334444444
Q ss_pred cee-cCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccc-cchhhHH-hhhcCCCcceEeCCCcE
Q 014564 292 SKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFY-ETDAEVA-SLLAEGRVPVGIGENTK 367 (422)
Q Consensus 292 ~~~-~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~i~~~~~ 367 (422)
+.+ .++.+.++.|+++|.|+ ++.+.++.||++|.|++++.|.+.++++++-. ...+... +...++ +.|++.+.
T Consensus 286 ~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~---~~i~~~~~ 362 (451)
T TIGR01173 286 VVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEGCDVGPFARLRPGSVLGAGVHIGNFVETKNARIGKG---SKAGHLSY 362 (451)
T ss_pred CEECCCcEEeeeEecCCCEEeeecEEecccccCCcEECCeeEECCCCEECCCcEEccceeecCcEECCC---cEecceee
Confidence 455 45556677788888887 45667778888888887777776555554310 0000000 000111 34445555
Q ss_pred EeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 368 IKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 368 i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.+|.||++|.||+++++.+.++..+ ...++++++|+.++.+ ||++++|++|++|
T Consensus 363 i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~g~~v 423 (451)
T TIGR01173 363 LGDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNTQLVAPVKVGDGATIAAGSTV 423 (451)
T ss_pred EeeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCCEEECCcEECCCCEEccCCEE
Confidence 56688888999999988887666555 3588899999888654 8899999998875
No 18
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=5.5e-41 Score=336.21 Aligned_cols=377 Identities=20% Similarity=0.242 Sum_probs=262.1
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|++|++||||||.|+||+ ...||+|+|++|+ |||+|+++.|.++|++++++++++..+++++++... +
T Consensus 3 ~~~~~aiIlAaG~gtRl~---~~~pK~l~~i~gk-pli~~~i~~l~~~gi~~i~vv~~~~~~~i~~~~~~~-----~--- 70 (456)
T PRK09451 3 NSAMSVVILAAGKGTRMY---SDLPKVLHTLAGK-PMVQHVIDAANELGAQHVHLVYGHGGDLLKQTLADE-----P--- 70 (456)
T ss_pred CCCceEEEEcCCCCCcCC---CCCChhcceeCCh-hHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhhccC-----C---
Confidence 346899999999999998 3699999999999 999999999999999999999998888888776421 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++.... ..|++++++.+..++.+ +++||+++||. +...++.++++.|.+.+ +++++
T Consensus 71 ----~~~i~~~~---------~~Gt~~al~~a~~~l~~-----~~~vlV~~gD~P~i~~~~i~~l~~~~~~~~--~~i~~ 130 (456)
T PRK09451 71 ----LNWVLQAE---------QLGTGHAMQQAAPFFAD-----DEDILMLYGDVPLISVETLQRLRDAKPQGG--IGLLT 130 (456)
T ss_pred ----cEEEECCC---------CCCcHHHHHHHHHhhcc-----CCcEEEEeCCcccCCHHHHHHHHHHhhcCC--EEEEE
Confidence 22222111 24999999999988753 37899999998 44566888888775433 44555
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhc
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASA 236 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~ 236 (422)
.+.++ |..+++. .+.+++|.+|.|||... ...++++|+|+|+++.|.++++.... ..+.+..++++.++
T Consensus 131 ~~~~~---~~~yG~v-~~~~g~V~~~~EKp~~~~~~~~~~~~~~GiYi~~~~~l~~~l~~~~~~~~~~e~~l~d~i~~~i 206 (456)
T PRK09451 131 VKLDN---PTGYGRI-TRENGKVVGIVEQKDATDEQRQIQEINTGILVANGADLKRWLAKLTNNNAQGEYYITDIIALAH 206 (456)
T ss_pred EEcCC---CCCceEE-EecCCeEEEEEECCCCChHHhhccEEEEEEEEEEHHHHHHHHHhcCCccccCceeHHHHHHHHH
Confidence 55544 5556554 44567999999997531 13578999999999988766665432 13445678999988
Q ss_pred cc-CceeEEE------ecce--EeecCCHHHHHHHHH--hccCC-----CCC------------ccccCCCCcccccCCC
Q 014564 237 NE-QFLKAYL------FNDY--WEDIGTIRSFFEANL--ALTAH-----PPM------------FSFYDATKPIYTSRRN 288 (422)
Q Consensus 237 ~~-~~i~~~~------~~~~--~~di~t~~~~~~a~~--~ll~~-----~~~------------~~~~~~~~~~~~~~~~ 288 (422)
++ .++.+|. +.|+ |.|++++++|++++. .++.. .+. ...+++.+.+.+.+.+
T Consensus 207 ~~g~~v~~~~~~~~~~~~G~~~~~di~~~~~y~~~~~~~~~l~~~~~~~~p~~~~~~~~~~ig~~~~I~~~~~i~~~v~i 286 (456)
T PRK09451 207 QEGREIVAVHPQRLSEVEGVNNRLQLARLERVYQAEQAEKLLLAGVMLRDPARFDLRGTLTHGRDVEIDTNVIIEGNVTL 286 (456)
T ss_pred HCCCeEEEEecCCHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCEEEECCcEEECCCCEEcCCeEEecCcEE
Confidence 76 6888886 4566 778999999999873 22111 110 1133344444445555
Q ss_pred CCCcee-cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccc-cchhhH--HhhhcCCCcceEeC
Q 014564 289 LPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFY-ETDAEV--ASLLAEGRVPVGIG 363 (422)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~i~ 363 (422)
++++.+ .++.++++.|+++|.|+. +.+.+|+||++|+|++++.|...+.++++.. ...+.. ..++.+ +.++
T Consensus 287 g~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~----~~~~ 362 (456)
T PRK09451 287 GNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANLGAACTIGPFARLRPGAELAEGAHVGNFVEMKKARLGKG----SKAG 362 (456)
T ss_pred CCCCEECCCceEecCEEcCCCEEcCCEEEeCCccCCCcEecCceEEeCCCEECCCceeccceeeeceeeCCC----CccC
Confidence 666666 456667788888888874 5556777777777777777764444443211 000000 111111 4455
Q ss_pred CCcEEeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 364 ENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 364 ~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.+.+.+|.||++|.||+++++.+.++... ...|+++++|+.++++ ||++++|++|++|
T Consensus 363 ~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~~~~ig~~~~i~~gs~v 427 (456)
T PRK09451 363 HLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQLVAPVTVGKGATIGAGTTV 427 (456)
T ss_pred ccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCEEeCCcEECCCCEECCCCEE
Confidence 555666789999999999999888765444 3689999999888764 7888888888764
No 19
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-41 Score=299.79 Aligned_cols=331 Identities=22% Similarity=0.298 Sum_probs=257.0
Q ss_pred cceeEEEEcCC--CCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecChHHHHHHHHhhccCCCCc
Q 014564 7 RTVAAVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGV 83 (422)
Q Consensus 7 ~~~~aVILAaG--~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~ 83 (422)
|+++||||.|| .||||+||+.+.||||.|++|+ |||.|.|+.|.+. |..+|+++--|+.+.+.+|+..-.+
T Consensus 1 ~~~~AVIlVGGP~kGTRFRPLSf~vPKPLfpiaG~-pmI~Hhi~ac~qi~~l~eI~LvGFy~e~~f~~fis~~~~----- 74 (407)
T KOG1460|consen 1 MKVKAVILVGGPQKGTRFRPLSFNVPKPLFPIAGV-PMIHHHISACKQISGLAEILLVGFYEERVFTDFISAIQQ----- 74 (407)
T ss_pred CceEEEEEecCCCCCccccccccCCCCCccccCCc-chhhhhHHHHhcccchhheeEEecccchHHHHHHHHHHh-----
Confidence 46899999999 6999999999999999999999 9999999999996 8999999988888888888754211
Q ss_pred ccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEE
Q 014564 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
.|.. .++++.+.. +.||++.|+..++.+-. ...+.|+|++||.-.+.++.+|++.|++.+..++|+.
T Consensus 75 e~~~-pvrYL~E~~---------plGtaGgLyhFrdqIl~---g~ps~vFvlnaDVCcsfPl~~ml~ahr~~g~~~tll~ 141 (407)
T KOG1460|consen 75 EFKV-PVRYLREDN---------PLGTAGGLYHFRDQILA---GSPSAVFVLNADVCCSFPLQDMLEAHRRYGGIGTLLV 141 (407)
T ss_pred hccc-chhhhccCC---------CCCcccceeehhhHHhc---CCCceEEEEecceecCCcHHHHHHHHhhcCCceEEEE
Confidence 1111 144443332 36999999999877743 2368999999999999999999999999999999999
Q ss_pred eecCCCCCcccCCceeeec-cceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhh----------------CCCCC-
Q 014564 164 LPMDDSEKPKGKDLKAMAV-DTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWR----------------FPTAN- 225 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~-d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~----------------~~~~~- 225 (422)
++++.. ....++..+-+. .++++.+.+||...-++.++||+|+|++++|+.+-+-. .+.+.
T Consensus 142 tkvs~e-~asnfG~lV~dP~t~evlHYveKPsTfvSd~InCGvYlF~~eif~~i~~v~~q~~~~~~~~~~~~~l~~g~~d 220 (407)
T KOG1460|consen 142 TKVSRE-QASNFGCLVEDPSTGEVLHYVEKPSTFVSDIINCGVYLFTPEIFNAIAEVYRQRQDLLEVEKDLPLLQPGPAD 220 (407)
T ss_pred EEecHh-HhhccCeeeecCCcCceEEeecCcchhhhcccceeEEEecHHHHHHHHHHHHHHHhhhhhhhcccccCCCccc
Confidence 988752 234555555553 47999999999887789999999999999987532111 01112
Q ss_pred --ccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhccCCCCC---cccc-CCCCcccccCCCCCCceecCCcc
Q 014564 226 --DFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHPPM---FSFY-DATKPIYTSRRNLPPSKIDDSKI 299 (422)
Q Consensus 226 --~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 299 (422)
.+..|+|..++..+++|+|..+++|.++.|+-.-+.+++.++++... ..+. .++.. +.+.++++|+.
T Consensus 221 ~irLeqDvlspLag~k~lY~y~t~~fW~QiKtagsal~as~lYLs~yk~t~p~~Lak~pgt~----a~IigdVyIhP--- 293 (407)
T KOG1460|consen 221 FIRLEQDVLSPLAGSKQLYAYETTDFWSQIKTAGSALYASRLYLSQYKRTHPARLAKGPGTQ----AEIIGDVYIHP--- 293 (407)
T ss_pred eEEeechhhhhhcCCCceEEEecccHHHHhccccceeehhhhHHHHHhhcCchhhcCCCCCC----ceEEeeeEEcC---
Confidence 23458899999999999999999999999999999999888774311 0111 12222 23333344433
Q ss_pred cccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEE
Q 014564 300 VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 379 (422)
Q Consensus 300 ~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i 379 (422)
++.+.+.+.||+ ++-||++++||+|++|.+|+++++ +.|..|+.+.+|+||.+|.|
T Consensus 294 -sakvhptAkiGP----NVSIga~vrvg~GvRl~~sIIl~d-------------------~ei~enavVl~sIigw~s~i 349 (407)
T KOG1460|consen 294 -SAKVHPTAKIGP----NVSIGANVRVGPGVRLRESIILDD-------------------AEIEENAVVLHSIIGWKSSI 349 (407)
T ss_pred -cceeCCccccCC----CceecCCceecCCceeeeeeeccC-------------------cEeeccceEEeeeecccccc
Confidence 456666777776 778889999999999999999987 89999999999999999999
Q ss_pred CCCeEEccC
Q 014564 380 GKNVIIANS 388 (422)
Q Consensus 380 ~~~~~i~~~ 388 (422)
|.++.+...
T Consensus 350 GrWaRVe~~ 358 (407)
T KOG1460|consen 350 GRWARVEGI 358 (407)
T ss_pred cceeeeccc
Confidence 999888754
No 20
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2.4e-39 Score=323.88 Aligned_cols=377 Identities=21% Similarity=0.255 Sum_probs=244.2
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|+++.|||||||.|+||++ ..||+|+|++|+ |||+|+|++|.++++++++|++++..+++.+++.+. ...
T Consensus 3 ~~~~~aiILAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~gi~~ivvv~~~~~~~i~~~~~~~---~~~--- 72 (446)
T PRK14353 3 DRTCLAIILAAGEGTRMKS---SLPKVLHPVAGR-PMLAHVLAAAASLGPSRVAVVVGPGAEAVAAAAAKI---APD--- 72 (446)
T ss_pred cccceEEEEcCCCCCccCC---CCCcccCEECCc-hHHHHHHHHHHhCCCCcEEEEECCCHHHHHHHhhcc---CCC---
Confidence 4568999999999999974 589999999999 999999999999999999999999888888877432 101
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
+.+..... ..|++++++.++.++... .++|++++||. +++.+ +..+++. .+.++++++..
T Consensus 73 ----~~~~~~~~---------~~G~~~sl~~a~~~l~~~----~~~~lv~~~D~P~i~~~~l~~l~~~-~~~~~~~~i~~ 134 (446)
T PRK14353 73 ----AEIFVQKE---------RLGTAHAVLAAREALAGG----YGDVLVLYGDTPLITAETLARLRER-LADGADVVVLG 134 (446)
T ss_pred ----ceEEEcCC---------CCCcHHHHHHHHHHHhcc----CCCEEEEeCCcccCCHHHHHHHHHh-HhcCCcEEEEE
Confidence 11221111 248999999999888521 37899999998 55444 6777773 34556777766
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhc
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASA 236 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~ 236 (422)
.+..+ +..++...+ .+++|.++.+|+... ...++++|+|+|+++.|.++++.... ..+.+..+.++.++
T Consensus 135 ~~~~~---~~~~g~~~~-~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~~~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~ 210 (446)
T PRK14353 135 FRAAD---PTGYGRLIV-KGGRLVAIVEEKDASDEERAITLCNSGVMAADGADALALLDRVGNDNAKGEYYLTDIVAIAR 210 (446)
T ss_pred EEeCC---CCcceEEEE-CCCeEEEEEECCCCChHHhhceEEEEEEEEEEHHHHHHHHHhhcccCCCCcEeHHHHHHHHH
Confidence 65543 444443334 567899999886432 23678999999999877556655322 12334567788887
Q ss_pred cc-CceeEEEec-ceEeecCCHHHHHHHHHhccCCC------CCcc-------ccCCCCcccccCCCCCCceecCCcccc
Q 014564 237 NE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHP------PMFS-------FYDATKPIYTSRRNLPPSKIDDSKIVD 301 (422)
Q Consensus 237 ~~-~~i~~~~~~-~~~~di~t~~~~~~a~~~ll~~~------~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (422)
+. .++++++.+ +.|.++++|++|..++..+..+. .... ++.+.+.+.+++.+++++.+.+ +
T Consensus 211 ~~g~~v~~~~~~~~~~~~I~t~~dl~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~i~~~~~I~~----~ 286 (446)
T PRK14353 211 AEGLRVAVVEAPEDEVRGINSRAELAEAEAVWQARRRRAAMLAGVTLIAPETVFFSYDTVIGRDVVIEPNVVFGP----G 286 (446)
T ss_pred HCCCeEEEEecChhhcccCCCHHHHHHHHHHHHHHHHHHHHHCCCEeeCCCeEEECCceEECCCCEECCCCEECC----C
Confidence 64 679999986 56999999999998886443220 0111 2223333333444444443322 3
Q ss_pred cEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccc-cchhhHH--hhhcCCCcceEeCCCcEEeeeEeCCCc
Q 014564 302 SIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFY-ETDAEVA--SLLAEGRVPVGIGENTKIKECIIDKNA 377 (422)
Q Consensus 302 ~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~i~~~~~i~~~~i~~~~ 377 (422)
+.|+++|.|+. +.+.+++||++|+|++++.|...+.+|++.. ...+.+. .++.+ +.+++++.+.+++||++|
T Consensus 287 ~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~----~~i~~~~~i~~~~ig~~~ 362 (446)
T PRK14353 287 VTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEG----AKVNHLTYIGDATIGAGA 362 (446)
T ss_pred CEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCC----CEECCeeEEcCcEEcCCc
Confidence 45555555552 3444556666666666655553333333200 0000000 00000 455555566677888888
Q ss_pred EECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 378 RIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 378 ~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
.||+++++.+..+... ...++++++|+.++++ ||++++|++|++|
T Consensus 363 ~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 363 NIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred EECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 8888887766554333 4578888888888664 7888888888864
No 21
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-40 Score=303.40 Aligned_cols=330 Identities=22% Similarity=0.319 Sum_probs=235.4
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecC-hHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~-~~~i~~~l~~~~~~~~~~~ 84 (422)
|.+|+|||+|+|.||||-.++...|||||||+|+ |||+|+|.+|.++||++++|++... ...++..+..++.... +
T Consensus 7 ~~efqavV~a~~ggt~~p~~~~~~pKaLLPIgn~-PMi~YpL~~L~~~gfteiiVv~~e~e~~~i~~al~~~~~l~~--~ 83 (433)
T KOG1462|consen 7 MSEFQAVVLAGGGGTRMPEVTSRLPKALLPIGNK-PMILYPLNSLEQAGFTEIIVVVNEDEKLDIESALGSNIDLKK--R 83 (433)
T ss_pred hHHhhhheeecCCceechhhhhhcchhhcccCCc-ceeeeehhHHHhcCCeEEEEEecHHHHHHHHHHHhcCCcccc--c
Confidence 5789999999999999999999999999999999 9999999999999999999999874 4678888866543221 1
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEe
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
. ..+++....++ ..||+++|+.....+. .+|||+++||.+++.++..++++++..++...+++.
T Consensus 84 ~--~~v~ip~~~~~--------d~gtadsLr~Iy~kik------S~DflvlsCD~Vtdv~l~~lvd~FR~~d~slamli~ 147 (433)
T KOG1462|consen 84 P--DYVEIPTDDNS--------DFGTADSLRYIYSKIK------SEDFLVLSCDFVTDVPLQPLVDKFRATDASLAMLIG 147 (433)
T ss_pred c--cEEEeeccccc--------ccCCHHHHhhhhhhhc------cCCEEEEecccccCCCcHHHHHHHhccChhHhHHhc
Confidence 1 12444332222 3699999999998886 369999999999999999999999987766544444
Q ss_pred ecCC--------CCCcccCCceeeecc-ceeeeeeec-----------------C-CCCCCceeeeeEEEEeHHHHHHHH
Q 014564 165 PMDD--------SEKPKGKDLKAMAVD-TTVLGLSKQ-----------------E-AEEKPYIASMGVYLFKKEILLNLL 217 (422)
Q Consensus 165 ~~~~--------~~k~~~~~~~~~~~d-~~v~~~~~k-----------------~-~~~~~~~~~~Giy~~~~~~l~~ll 217 (422)
.... .++++...+..++++ +|+...... | ....+.+.++++|+|+.++++. +
T Consensus 148 ~~~s~~~~pgqk~k~k~~~d~igi~e~t~rl~y~~~~~d~~~~l~i~~slL~~~prltl~t~L~dahiY~~k~~v~d~-l 226 (433)
T KOG1462|consen 148 NALSEVPIPGQKGKKKQARDVIGINEDTERLAYSSDSADEEEPLVIRKSLLWNHPRLTLTTKLVDAHIYVFKHWVIDL-L 226 (433)
T ss_pred cccccccccCcccccccccceeeeccccceeEEeecCCcCCCceehhhhhhhcCCceEEeccccceeeeeeHHHHHHH-H
Confidence 3221 111112223333333 343332211 1 0134678899999999999974 4
Q ss_pred hhhCCCCCccccchhhhhccc---------------------------------CceeEEEe--cceEeecCCHHHHHHH
Q 014564 218 RWRFPTANDFGSEIIPASANE---------------------------------QFLKAYLF--NDYWEDIGTIRSFFEA 262 (422)
Q Consensus 218 ~~~~~~~~~~~~~~l~~l~~~---------------------------------~~i~~~~~--~~~~~di~t~~~~~~a 262 (422)
.+. .+..+|..+++|.+++. .++++|.. ...+.+++|+-.|+++
T Consensus 227 ~~~-~sisSfk~~f~P~lvkkQ~q~~~~~~~~~~~~l~t~~~~~~d~~~~~~d~ik~y~~~~p~e~~~~raNtL~~y~ei 305 (433)
T KOG1462|consen 227 SEK-ESISSFKADFLPYLVKKQFQKNPPLKKNETSILPTPNLNNPDGIHSPDDRIKCYAYILPTESLFVRANTLLSYMEI 305 (433)
T ss_pred hcC-CcceeecccccchhhhhhhhcCCCcccccccccCCccccCcccccCcccceeeeEEEccCccceEEecchHHHHhh
Confidence 432 33445556666666542 22333333 2457899999999999
Q ss_pred HH--hccCCCCCccccCCCCcccccCCCCCCceecCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEEC
Q 014564 263 NL--ALTAHPPMFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLG 339 (422)
Q Consensus 263 ~~--~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~ 339 (422)
|+ .+....+.... +...+. .....-.+++|+++|.|+ .+.+++|+||.+|.||+.++|.+|.+++
T Consensus 306 N~~k~~~~l~~e~~~------~k~~~~------~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~ 373 (433)
T KOG1462|consen 306 NRDKKLKKLCSEAKF------VKNYVK------KVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMD 373 (433)
T ss_pred hHHHHHHHhcccccc------ccchhh------heeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeec
Confidence 94 33322211111 100000 001111278999999999 5788999999999999999999999998
Q ss_pred CccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEcc
Q 014564 340 ADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
+ ++||++|.|++|+||+++.||+|+.+.|
T Consensus 374 n-------------------V~vg~G~~IensIIg~gA~Ig~gs~L~n 402 (433)
T KOG1462|consen 374 N-------------------VVVGDGVNIENSIIGMGAQIGSGSKLKN 402 (433)
T ss_pred C-------------------cEecCCcceecceecccceecCCCeeee
Confidence 8 9999999999999999999999999986
No 22
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=9.8e-40 Score=314.60 Aligned_cols=361 Identities=20% Similarity=0.317 Sum_probs=270.0
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
..+|||+||.-+.+||+|+|...|++|||++|. |||+|+|++|..+|+++++++++.+..++.+|+++.. |... ++
T Consensus 23 ~rLqAIllaDsf~trF~Plt~~~p~~LLPlaNV-pmIdYtL~~L~~agV~eVfvfc~~~~~qi~e~i~~se-w~~~--~~ 98 (673)
T KOG1461|consen 23 HRLQAILLADSFETRFRPLTLEKPRVLLPLANV-PMIDYTLEWLERAGVEEVFVFCSAHAAQIIEYIEKSE-WYLP--MS 98 (673)
T ss_pred cceEEEEEeccchhcccccccCCCceEeeecCc-hHHHHHHHHHHhcCceEEEEEecccHHHHHHHHhhcc-cccc--cc
Confidence 568999999999999999999999999999999 9999999999999999999999999999999998743 3222 22
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHc-----CCcEEE
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~-----~~~~tl 161 (422)
-..+.|+... +...++++|... + ++...++|++++||++++.+|.+++++|+.+ ++.|||
T Consensus 99 ~~v~ti~s~~----------~~S~GDamR~id----~-k~litgDFiLVsgd~vsN~pl~~~l~eHr~r~k~Dk~~iMTm 163 (673)
T KOG1461|consen 99 FIVVTICSGE----------SRSVGDAMRDID----E-KQLITGDFILVSGDTVSNMPLRNVLEEHRKRRKEDKDAIMTM 163 (673)
T ss_pred ceEEEEcCCC----------cCcHHHHHHHHH----h-cceeecceEEEeCCeeecCchHHHHHHHHHHhhhCccceEEE
Confidence 1223333221 236777776643 2 2345699999999999999999999999653 356888
Q ss_pred EEeecCCCCCcccCCceeeec-cceeeeeee--cC----------------CCCCCceeeeeEEEEeHHHHHHHHhhhCC
Q 014564 162 SCLPMDDSEKPKGKDLKAMAV-DTTVLGLSK--QE----------------AEEKPYIASMGVYLFKKEILLNLLRWRFP 222 (422)
Q Consensus 162 ~~~~~~~~~k~~~~~~~~~~~-d~~v~~~~~--k~----------------~~~~~~~~~~Giy~~~~~~l~~ll~~~~~ 222 (422)
+..+.+..+.+.. -++.++. +.+++.+.+ +. ...+.++.+++|-+|++.++. ++...|+
T Consensus 164 v~k~~st~~~~~~-~~~avd~~T~~ll~yq~~~~~~~~~~l~~sl~d~~~~v~vr~DL~dc~IdIcS~~V~s-LF~dNFD 241 (673)
T KOG1461|consen 164 VFKESSTRETTEQ-VVIAVDSRTSRLLHYQKCVREKHDIQLDLSLFDSNDEVEVRNDLLDCQIDICSPEVLS-LFTDNFD 241 (673)
T ss_pred EEeccccccCCcc-eEEEEcCCcceEEeehhhcccccccccCHHHhcCCCcEEEEccCCCceeeEecHhHHH-Hhhhccc
Confidence 8877642121211 1344443 467777764 11 013568999999999999996 5666555
Q ss_pred C--CCccccchhhhhcccCceeEEEecc--eEeecCCHHHHHHHHHhccCCCCCccccCCCCcccc-------cC--CCC
Q 014564 223 T--ANDFGSEIIPASANEQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT-------SR--RNL 289 (422)
Q Consensus 223 ~--~~~~~~~~l~~l~~~~~i~~~~~~~--~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~-------~~--~~~ 289 (422)
. ..+|...+|..-+-+.+|+++.... |..++.++..|...+.++++||. ..+-|+..... .. .-+
T Consensus 242 yq~r~DfV~GvL~~dilg~kI~~~~~~~~~yA~rv~n~~syd~vSkDiI~RW~--YP~Vpd~~~~~~q~~~~~r~~IYk~ 319 (673)
T KOG1461|consen 242 YQTRDDFVRGVLVDDILGYKIHVHVLSSIDYAARVENLRSYDLVSKDIIQRWT--YPLVPDINFSGNQTFSLERRNIYKS 319 (673)
T ss_pred ceehhhhhhhhhhhhhcCCeEEEEEcChhhhhhhhcccHHHHHHHHHHHHhhc--ccccccccCCCCceeeecccccccC
Confidence 3 4567777777777789999999875 88999999999999999999982 11112111111 11 112
Q ss_pred CCcee-cCCccc-ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCc
Q 014564 290 PPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 366 (422)
Q Consensus 290 ~~~~~-~~~~~~-~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 366 (422)
+.+.+ ..+.+. ++.||.|+.|+ ++.|.+|+||.||+||.+++|.++.++.+ |+||+||
T Consensus 320 ~dv~~~~~~~v~~~~~ig~gT~Ig~g~~I~NSVIG~~c~IgsN~~I~~S~iw~~-------------------v~Igdnc 380 (673)
T KOG1461|consen 320 PDVVLSHSVIVGANVVIGAGTKIGSGSKISNSVIGANCRIGSNVRIKNSFIWNN-------------------VTIGDNC 380 (673)
T ss_pred ccceehhhccccceEEecccccccCCCeeecceecCCCEecCceEEeeeeeecC-------------------cEECCCc
Confidence 22222 233333 78899999998 56788999999999999999999999887 9999999
Q ss_pred EEeeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 367 KIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 367 ~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
.|.+|+||+++.|++++++.. +++|+.++ ++|++-.+..+++|
T Consensus 381 ~I~~aii~d~v~i~~~~~l~~------------g~vl~~~V-Vv~~~~~l~~ns~~ 423 (673)
T KOG1461|consen 381 RIDHAIICDDVKIGEGAILKP------------GSVLGFGV-VVGRNFVLPKNSKV 423 (673)
T ss_pred eEeeeEeecCcEeCCCcccCC------------CcEEeeee-EeCCCccccccccc
Confidence 999999999999999999976 67777774 45777777777543
No 23
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.7e-39 Score=322.72 Aligned_cols=371 Identities=21% Similarity=0.246 Sum_probs=247.3
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||++ .+||+|+|++|+ |||+|+|+.|.+++ ++++|++++..+.+++++.. +
T Consensus 1 m~avIlA~G~gtRl~~---~~pK~l~~v~gk-pli~~~l~~l~~~~-~~i~vv~~~~~~~i~~~~~~------~------ 63 (448)
T PRK14357 1 MRALVLAAGKGTRMKS---KIPKVLHKISGK-PMINWVIDTAKKVA-QKVGVVLGHEAELVKKLLPE------W------ 63 (448)
T ss_pred CeEEEECCCCCccCCC---CCCceeeEECCe-eHHHHHHHHHHhcC-CcEEEEeCCCHHHHHHhccc------c------
Confidence 6899999999999974 699999999999 99999999999975 89999999888777776532 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
+.++.... .+|++++++.+..++.+ .+.|++++||. +...++.++++.|+++++++++++.+.
T Consensus 64 -~~~~~~~~---------~~g~~~ai~~a~~~l~~-----~~~vlv~~gD~p~i~~~~i~~l~~~~~~~~~d~ti~~~~~ 128 (448)
T PRK14357 64 -VKIFLQEE---------QLGTAHAVMCARDFIEP-----GDDLLILYGDVPLISENTLKRLIEEHNRKGADVTILVADL 128 (448)
T ss_pred -cEEEecCC---------CCChHHHHHHHHHhcCc-----CCeEEEEeCCcccCCHHHHHHHHHHHHhcCCeEEEEEEEc
Confidence 22222111 25899999999998853 37899999997 556678999999988888998888776
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCC----CCceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhcccC
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEE----KPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQ 239 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~----~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~~~~ 239 (422)
.+ |..+++..++ ++++ .+.+++... ..++.++|+|+|++++|.+++++.... .+.+..++++.+ .
T Consensus 129 ~~---~~~~g~v~~d-~g~v-~~~e~~~~~~~~~~~~~~~~GiYv~~~~~l~~~~~~~~~~~~~~~~~~~d~i~~~---~ 200 (448)
T PRK14357 129 ED---PTGYGRIIRD-GGKY-RIVEDKDAPEEEKKIKEINTGIYVFSGDFLLEVLPKIKNENAKGEYYLTDAVNFA---E 200 (448)
T ss_pred CC---CCCcEEEEEc-CCeE-EEEECCCCChHHhcCcEEEeEEEEEEHHHHHHHHHhhCcCCCCCeEEHHHHHHhh---h
Confidence 54 5556655555 5677 666654321 135889999999999887666543221 222334666655 3
Q ss_pred ceeEEEecce--EeecCCHHHHHHHHHhccCCC------CC-------ccccCCCCcccccCC------------CCCCc
Q 014564 240 FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PM-------FSFYDATKPIYTSRR------------NLPPS 292 (422)
Q Consensus 240 ~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~------~~-------~~~~~~~~~~~~~~~------------~~~~~ 292 (422)
++.+|...++ |.+++++++|..+...+.... .. ...+++.+.+...+. +++++
T Consensus 201 ~v~~~~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~Ig~~~~i~~~~~I~~~~~ig~~~ 280 (448)
T PRK14357 201 KVRVVKTEDLLEITGVNTRIQLAWLEKQLRMRILEELMENGVTILDPNTTYIHYDVEIGMDTIIYPMTFIEGKTRIGEDC 280 (448)
T ss_pred heeEEecCCHHHEEccCCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEEccceEECCCcEEcCCcEEEeeeEECCCc
Confidence 5788888888 667779998887655442210 11 112222333333333 33333
Q ss_pred ee-cCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccc-hhhHH-hhhcCCCcceEeCCCcEEe
Q 014564 293 KI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET-DAEVA-SLLAEGRVPVGIGENTKIK 369 (422)
Q Consensus 293 ~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~i~~~~~i~ 369 (422)
.+ .++.+.++.|+++|.|..+.+.+|+||+++.|+++++|.+.++++++.... .+... +...++ +.+++.+.+.
T Consensus 281 ~I~~~~~i~~s~Ig~~~~I~~~~v~~sii~~~~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~---~~~~~~~~~~ 357 (448)
T PRK14357 281 EIGPMTRIVDCEIGNNVKIIRSECEKSVIEDDVSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGEN---TKAQHLTYLG 357 (448)
T ss_pred EECCCceecccEECCCCEEeeeEEEEEEEeCCcEECCCcEECCcccccCCcEecCceeeeccEEcCC---cCcccccccc
Confidence 33 234445566777777765566778888888888888876655555531100 00000 000000 2333344445
Q ss_pred eeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 370 ECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 370 ~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+++||++|.||+++++.+..+..+ .+.++++++|+.++++ ||++++|++|++|
T Consensus 358 ~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~i~~gv~Ig~~~~i~ag~~v 416 (448)
T PRK14357 358 DATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFIGSNSSLVAPVRIGKGALIGAGSVI 416 (448)
T ss_pred CcEECCCcEECCCcccccccccccCCcEECCCCEECCCCEEeCCcEECCCCEEcCCCEE
Confidence 678888888888888777655544 4688999999888754 7888888888875
No 24
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=1.7e-39 Score=326.09 Aligned_cols=380 Identities=22% Similarity=0.275 Sum_probs=255.2
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
|.++|||||||.|+||+ ..+||+|+|++|+ |||+|+|++|.++|+++++++++++.+++++++.. +
T Consensus 1 m~~~avIlAaG~g~Rl~---~~~pK~ll~i~Gk-pli~~~l~~l~~~gi~~iivvv~~~~~~i~~~~~~------~---- 66 (458)
T PRK14354 1 MNRYAIILAAGKGTRMK---SKLPKVLHKVCGK-PMVEHVVDSVKKAGIDKIVTVVGHGAEEVKEVLGD------R---- 66 (458)
T ss_pred CCceEEEEeCCCCcccC---CCCChhhCEeCCc-cHHHHHHHHHHhCCCCeEEEEeCCCHHHHHHHhcC------C----
Confidence 46799999999999997 3699999999999 99999999999999999999999988888877632 1
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-e-eecChHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
+.++.... ..|++++++.+.+++++. ++.|++++||. + ...++.++++.|.+.+++.++++.
T Consensus 67 ---~~~~~~~~---------~~g~~~al~~a~~~l~~~----~d~vlv~~~D~p~i~~~~l~~li~~~~~~~~~~t~~~~ 130 (458)
T PRK14354 67 ---SEFALQEE---------QLGTGHAVMQAEEFLADK----EGTTLVICGDTPLITAETLKNLIDFHEEHKAAATILTA 130 (458)
T ss_pred ---cEEEEcCC---------CCCHHHHHHHHHHHhccc----CCeEEEEECCccccCHHHHHHHHHHHHhcCCceEEEEE
Confidence 11221111 248999999999988631 36799999997 3 455689999999877778877776
Q ss_pred ecCCCCCcccCCceeeeccceeeeeeecCCC----CCCceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhcc
Q 014564 165 PMDDSEKPKGKDLKAMAVDTTVLGLSKQEAE----EKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASAN 237 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~----~~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~~ 237 (422)
..++ |..++...++.++++..+.+++.. ...++.++|+|+|+++.|...++..... .+.+..++++.+++
T Consensus 131 ~~~~---~~~~g~v~~d~~~~V~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~l~~~~~~~~~~~~~~~d~~~~l~~ 207 (458)
T PRK14354 131 IAEN---PTGYGRIIRNENGEVEKIVEQKDATEEEKQIKEINTGTYCFDNKALFEALKKISNDNAQGEYYLTDVIEILKN 207 (458)
T ss_pred EcCC---CCCceEEEEcCCCCEEEEEECCCCChHHhcCcEEEEEEEEEEHHHHHHHHHHhCccccCCcEeHHHHHHHHHH
Confidence 5543 444444445666789999887631 1246789999999998655555443221 22334577777775
Q ss_pred c-CceeEEEecce--EeecCCHHHHHHHHHhccCCC------CCcc-------ccCCCCcccc------------cCCCC
Q 014564 238 E-QFLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFS-------FYDATKPIYT------------SRRNL 289 (422)
Q Consensus 238 ~-~~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~------~~~~-------~~~~~~~~~~------------~~~~~ 289 (422)
. .++++++++++ |.++++++||..++..+..+. +... ++.+...+.+ .+.++
T Consensus 208 ~g~~v~~~~~~g~~~~i~i~~~~Dl~~a~~ll~~~~~~~~~~~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig 287 (458)
T PRK14354 208 EGEKVGAYQTEDFEESLGVNDRVALAEAEKVMRRRINEKHMVNGVTIIDPESTYIDADVEIGSDTVIEPGVVIKGNTVIG 287 (458)
T ss_pred CCCeEEEEecCCcceEEccCCHHHHHHHHHHHHHHHHHHHHhCCcEEeCCCeEEECCCcEECCCCEEeCCeEEecceEEC
Confidence 4 67999999876 567789999988775432211 1111 1222222222 22333
Q ss_pred CCcee-cCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCcccc-chhhHHh-hhcCCCcceEeCCCc
Q 014564 290 PPSKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYE-TDAEVAS-LLAEGRVPVGIGENT 366 (422)
Q Consensus 290 ~~~~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~~ 366 (422)
.++.+ .++.+.++.|+++|.|+++.+.+|+||++|+|+++|.|...+++|++... ..+.+.. +..++ +.+++.+
T Consensus 288 ~~~~I~~~~~i~~~~ig~~~~I~~~~i~~~~ig~~~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~~~~i~~~---~~i~~~~ 364 (458)
T PRK14354 288 EDCVIGPGSRIVDSTIGDGVTITNSVIEESKVGDNVTVGPFAHLRPGSVIGEEVKIGNFVEIKKSTIGEG---TKVSHLT 364 (458)
T ss_pred CCCEECCCcEEeccEECCCCEEEEEEEeCCEECCCcEECCceEecCCCEEeCCcEECCceEEeeeEECCC---CEeccee
Confidence 33333 34555567777777777666778888888888888888765555554110 0000000 00011 3344444
Q ss_pred EEeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 367 KIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 367 ~i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
.+.+++||++|.||+++.+.+.++..+ ...++++++++.++.+ ||++++|++|++|
T Consensus 365 ~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~i~~~~~ig~~~~v~~~~~v 426 (458)
T PRK14354 365 YIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSNLVAPVTVGDNAYIAAGSTI 426 (458)
T ss_pred eecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCEEeCCcEECCCCEECCCCEE
Confidence 456677788888888888777554443 3577888888887654 7889999998875
No 25
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=2e-39 Score=325.42 Aligned_cols=378 Identities=18% Similarity=0.223 Sum_probs=246.3
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
.+.|||||||.|+||+ ...||+|+|++|+ |||+|+++.|..++++++++++++..+.+++++... .
T Consensus 5 ~~~aiILAaG~gtR~~---~~~pK~l~~i~gk-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~-----~----- 70 (456)
T PRK14356 5 TTGALILAAGKGTRMH---SDKPKVLQTLLGE-PMLRFVYRALRPLFGDNVWTVVGHRADMVRAAFPDE-----D----- 70 (456)
T ss_pred ceeEEEEcCCCCccCC---CCCCceecccCCC-cHHHHHHHHHHhcCCCcEEEEECCCHHHHHHhcccc-----C-----
Confidence 4789999999999997 5799999999999 999999999999999999999998888777765321 1
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eee-cChHHHHHHHHHcCCcEEEEEee
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~ll~~~~~~~~~~tl~~~~ 165 (422)
++++.... +.|++++++.+++++++. ..++|++++||+ ++. ..+..+++.|. +++++++..+
T Consensus 71 --~~~v~~~~---------~~Gt~~al~~a~~~l~~~---~~d~vlv~~gD~P~i~~~~i~~li~~~~--~~~~~l~~~~ 134 (456)
T PRK14356 71 --ARFVLQEQ---------QLGTGHALQCAWPSLTAA---GLDRVLVVNGDTPLVTTDTIDDFLKEAA--GADLAFMTLT 134 (456)
T ss_pred --ceEEEcCC---------CCCcHHHHHHHHHHHhhc---CCCcEEEEeCCcccCCHHHHHHHHHHHh--cCCEEEEEEE
Confidence 22332222 248999999999988631 147899999998 444 44788888775 5567777776
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCC------CCCceeeeeEEEEeHHHHHHHHhhhCC---CCCccccchhhhhc
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAE------EKPYIASMGVYLFKKEILLNLLRWRFP---TANDFGSEIIPASA 236 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~------~~~~~~~~Giy~~~~~~l~~ll~~~~~---~~~~~~~~~l~~l~ 236 (422)
..+ |..+++... .++++..+.+++.. ..+.++++|+|+|+++++..+++.... ..+.+..++++.++
T Consensus 135 ~~~---~~~~g~v~~-~~g~V~~~~ek~~~~~~~~~~~~~~~~~GiY~f~~~~l~~ll~~l~~~~~~~e~~ltd~i~~~~ 210 (456)
T PRK14356 135 LPD---PGAYGRVVR-RNGHVAAIVEAKDYDEALHGPETGEVNAGIYYLRLDAVESLLPRLTNANKSGEYYITDLVGLAV 210 (456)
T ss_pred cCC---CCCceEEEE-cCCeEEEEEECCCCChHHhhhhcCeEEEEEEEEEHHHHHHHHHhccCcccCCcEEHHHHHHHHH
Confidence 665 555554433 56889999887531 234678999999999988766554322 22334467787776
Q ss_pred c-cCceeEEEecc--eEeecCCHHHHHHHHHhccCCCC-------------CccccCCCCcccccC------------CC
Q 014564 237 N-EQFLKAYLFND--YWEDIGTIRSFFEANLALTAHPP-------------MFSFYDATKPIYTSR------------RN 288 (422)
Q Consensus 237 ~-~~~i~~~~~~~--~~~di~t~~~~~~a~~~ll~~~~-------------~~~~~~~~~~~~~~~------------~~ 288 (422)
+ +.++.++++.+ .|.++++|++|..++..+..+.. ....+++...+.+++ .+
T Consensus 211 ~~g~~v~~~~~~~~~~~~~I~tp~dl~~a~~~l~~~~~~~~~~~~~~i~~~~~~~i~~~~~i~~~~~i~~~~~i~~~~~i 290 (456)
T PRK14356 211 AEGMNVLGVNCGEDPNLLGVNTPAELVRSEELLRARIVEKHLESGVLIHAPESVRIGPRATIEPGAEIYGPCEIYGASRI 290 (456)
T ss_pred HCCCeEEEEEcCCcCeEecCcCHHHHHHHHHHHHHHHHHHHHHcCCEEeCCCcEEECCCcEECCCCEEeCCcEEeCceEE
Confidence 5 45789998865 57999999999998876654321 011122222222222 22
Q ss_pred CCCcee-cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCcccc-chhhHH-hhhcCCCcceEeCC
Q 014564 289 LPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYE-TDAEVA-SLLAEGRVPVGIGE 364 (422)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~i~~ 364 (422)
++++.+ .++.+.++.|+++|.|++ +.+.+++||++|.||++++|.++++++++... ..++.. ++..++ +.+++
T Consensus 291 g~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~~~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~---~~i~~ 367 (456)
T PRK14356 291 ARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDGCSVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKG---AKANH 367 (456)
T ss_pred CCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecccEECCceEECCCCEECCCCEecCCceeeeeEecCC---cEecc
Confidence 222233 234444566666666663 44556666666666666666544444432000 000000 011111 34445
Q ss_pred CcEEeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 365 NTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 365 ~~~i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
++.+.+|+||+++.||+++++.+.++... ...++++++++.++.+ ||++++|++|++|
T Consensus 368 ~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig~~~~i~~~~~ig~~~~i~~~~~v 431 (456)
T PRK14356 368 LTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIGSNTALVAPVTIGDGALVGAGSVI 431 (456)
T ss_pred cccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 55555677777777777777766554332 3578888888777653 7888888888864
No 26
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=100.00 E-value=3.1e-38 Score=316.33 Aligned_cols=377 Identities=20% Similarity=0.277 Sum_probs=257.1
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|.+||||||.|+||++ .+||+|+|++|+ |||+|+|++|.++|+++++|++++..+++++++.+.. +
T Consensus 2 ~~~iIlAaG~gsR~~~---~~pK~ll~v~gk-pli~~~l~~l~~~g~~~iivvv~~~~~~i~~~~~~~~----~------ 67 (450)
T PRK14360 2 LAVAILAAGKGTRMKS---SLPKVLHPLGGK-SLVERVLDSCEELKPDRRLVIVGHQAEEVEQSLAHLP----G------ 67 (450)
T ss_pred ceEEEEeCCCCccCCC---CCChhcCEECCh-hHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhcccC----C------
Confidence 6899999999999985 689999999999 9999999999999999999999988888888774311 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
+.++.... +.|++++++.++.++.+. +++|++++||. +...++..+++.|++.+++++++..+.
T Consensus 68 -i~~v~~~~---------~~G~~~sv~~~~~~l~~~----~~~vlV~~~D~P~i~~~~l~~ll~~~~~~~~~~~~~~~~~ 133 (450)
T PRK14360 68 -LEFVEQQP---------QLGTGHAVQQLLPVLKGF----EGDLLVLNGDVPLLRPETLEALLNTHRSSNADVTLLTARL 133 (450)
T ss_pred -eEEEEeCC---------cCCcHHHHHHHHHHhhcc----CCcEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEec
Confidence 33443221 248999999999888632 36799999998 445568999999988888887766655
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCC----CCCceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhcccC
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAE----EKPYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANEQ 239 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~----~~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~~~~ 239 (422)
.+ |..++...++.+++|.++.+|+.. ..+.++++|+|+|+++.|.+++++.... .+.+..+.++.+.
T Consensus 134 ~~---~~~~g~~~~d~~g~v~~~~ek~~~~~~~~~~~~~~~Giy~f~~~~l~~~~~~~~~~~~~~e~~~td~i~~~~--- 207 (450)
T PRK14360 134 PN---PKGYGRVFCDGNNLVEQIVEDRDCTPAQRQNNRINAGIYCFNWPALAEVLPKLSSNNDQKEYYLTDTVSLLD--- 207 (450)
T ss_pred CC---CCCccEEEECCCCCEEEEEECCCCChhHhcCcEEEEEEEEEEHHHHHHHHhhccccccCCceeHHHHHHHHh---
Confidence 44 555555566677899999988642 2357899999999998887776654322 2233345555552
Q ss_pred ceeEEEecce--EeecCCHHHHHHHHHhccCCC------CCccccC-------------------CCCcccccCCCCCCc
Q 014564 240 FLKAYLFNDY--WEDIGTIRSFFEANLALTAHP------PMFSFYD-------------------ATKPIYTSRRNLPPS 292 (422)
Q Consensus 240 ~i~~~~~~~~--~~di~t~~~~~~a~~~ll~~~------~~~~~~~-------------------~~~~~~~~~~~~~~~ 292 (422)
.+..+...++ |..+++++++..+...+.... +...+++ +.+.+.+.+.+++++
T Consensus 208 ~~~~~~v~~~~~~~~i~~~~dl~~~~~~l~~~~~~~~~d~~~~~i~~~~~~i~~~~~ig~~~~i~~~~~i~~~~~ig~~~ 287 (450)
T PRK14360 208 PVMAVEVEDYQEINGINDRKQLAQCEEILQNRIKEKWMLAGVTFIDPASCTISETVELGPDVIIEPQTHLRGNTVIGSGC 287 (450)
T ss_pred hceEEecCCHHHhhcCCCHHHHHHHHHHHHHHHHHHHHhcCcEEecCCeEEEeCCEEECCCCEECCCCEEeCCcEECCCC
Confidence 3455666655 566999999988776543211 1111122 222233333444444
Q ss_pred ee-cCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccc-hhhH-HhhhcCCCcceEeCCCcEEe
Q 014564 293 KI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET-DAEV-ASLLAEGRVPVGIGENTKIK 369 (422)
Q Consensus 293 ~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~i~~~~~i~ 369 (422)
.+ .++.+.++.|+++|+|+.+.+.+|+||++|.|+++|.|.+.++++++.... .+.. .++..++ +.|++++.+.
T Consensus 288 ~I~~~~~I~~~~I~~~~~I~~~~i~~~~ig~~~~I~~~~~I~~~~~Ig~~~~Ig~~~~i~~~~i~~~---~~i~~~~~~~ 364 (450)
T PRK14360 288 RIGPGSLIENSQIGENVTVLYSVVSDSQIGDGVKIGPYAHLRPEAQIGSNCRIGNFVEIKKSQLGEG---SKVNHLSYIG 364 (450)
T ss_pred EECCCcEEEEEEEcCCCEEeeeEEeeccccCCcEECCCCEECCCCEEeCceEECCCEEEeccccCCC---cEeccceecC
Confidence 45 445556677777777766666778888888888888887655555531100 0000 0011111 3444555555
Q ss_pred eeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 370 ECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 370 ~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+++||++|.||+++++.+.++... .+.++++++||.++++ ||++++|++|++|
T Consensus 365 ~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i~~~~~ig~~~~v~~~~~v 423 (450)
T PRK14360 365 DATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVLVAPITLGEDVTVAAGSTI 423 (450)
T ss_pred CceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEEeCCcEECCCCEECCCCEE
Confidence 678899999999988887666655 3578888888887654 7788888888764
No 27
>COG1209 RfbA dTDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=5e-39 Score=283.15 Aligned_cols=233 Identities=26% Similarity=0.423 Sum_probs=198.1
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecCh-HHHHHHHHhhccCCCCcccCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (422)
|||||||||.||||+|+|...||+|+||.+| |||+|.|+.|..+||++|.|+++++. ..+++++ +++.+|+.
T Consensus 1 mKgiILAgG~GTRL~PlT~~~~KqLlpV~~K-Pmi~y~l~~L~~aGI~dI~II~~~~~~~~~~~ll------Gdgs~~gv 73 (286)
T COG1209 1 MKGVILAGGSGTRLRPLTRVVPKQLLPVYDK-PMIYYPLETLMLAGIRDILIVVGPEDKPTFKELL------GDGSDFGV 73 (286)
T ss_pred CCcEEecCcCccccccccccCCcccceecCc-chhHhHHHHHHHcCCceEEEEecCCchhhhhhhh------cCccccCc
Confidence 7999999999999999999999999999999 99999999999999999999999855 5555554 66677774
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
. +-+..|.. +.|.|+|+..+++++. +++|+|+.||.++..++.++++.+.++..+++++..++.
T Consensus 74 ~---itY~~Q~~-------p~GlA~Av~~a~~fv~------~~~f~l~LGDNi~~~~l~~~~~~~~~~~~ga~i~~~~V~ 137 (286)
T COG1209 74 D---ITYAVQPE-------PDGLAHAVLIAEDFVG------DDDFVLYLGDNIFQDGLSELLEHFAEEGSGATILLYEVD 137 (286)
T ss_pred c---eEEEecCC-------CCcHHHHHHHHHhhcC------CCceEEEecCceeccChHHHHHHHhccCCCcEEEEEEcC
Confidence 4 33333332 3599999999999998 499999999998777999999999988889999999998
Q ss_pred CCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC--CCccccchhhhhccc-CceeEE
Q 014564 168 DSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANE-QFLKAY 244 (422)
Q Consensus 168 ~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~--~~~~~~~~l~~l~~~-~~i~~~ 244 (422)
+ |+.+++..++.|++++++.|||..+.++++.+|+|+|++.+|+ .++...++ .+....|+.+.++++ ..+...
T Consensus 138 d---P~rfGV~e~d~~~~v~~l~EKP~~P~SNlAvtGlY~~d~~Vf~-~~~~ikPS~RGElEITd~i~~~i~~G~~~~~~ 213 (286)
T COG1209 138 D---PSRYGVVEFDEDGKVIGLEEKPKEPKSNLAVTGLYFYDPSVFE-AIKQIKPSARGELEITDAIDLYIEKGYLVVAI 213 (286)
T ss_pred C---cccceEEEEcCCCcEEEeEECCCCCCCceeEEEEEEeChHHHH-HHHcCCCCCCCceEehHHHHHHHHcCcEEEEE
Confidence 7 8889999999889999999999999999999999999999997 45554443 233346788888875 555666
Q ss_pred EecceEeecCCHHHHHHHHHhccC
Q 014564 245 LFNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 245 ~~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
...|-|.|.||+++|++|++.++.
T Consensus 214 ~~~G~WlDtGt~~slleA~~~i~~ 237 (286)
T COG1209 214 LIRGWWLDTGTPESLLEANNFVRT 237 (286)
T ss_pred EccceEEecCChhhHHHHHHHHHH
Confidence 777899999999999999998865
No 28
>TIGR01105 galF UTP-glucose-1-phosphate uridylyltransferase, non-catalytic GalF subunit. GalF is a non-catalytic subunit of the UTP-glucose pyrophosphorylase modulating the enzyme activity to increase the formation of UDP-glucose
Probab=100.00 E-value=2.9e-36 Score=282.21 Aligned_cols=240 Identities=16% Similarity=0.229 Sum_probs=185.2
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccC------
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNY------ 79 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~------ 79 (422)
|.+|+|||||||.||||+|+|+.+||||+||+|| |||+|+|++|.++|+++|+|++++..+++.+|+...+.+
T Consensus 1 ~~~mkavILAaG~GTRL~PlT~~~PKpLvpV~gk-PiI~~vl~~l~~~Gi~~ivivv~~~~~~i~~~~~~~~~~~~~~~~ 79 (297)
T TIGR01105 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCCCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEecCChHHHHHHHhchHHHHHHHHH
Confidence 4579999999999999999999999999999999 999999999999999999999999999999998643210
Q ss_pred ----------CCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeee-------
Q 014564 80 ----------GSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (422)
Q Consensus 80 ----------~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (422)
.+..+++.. +.++. |. +++||++|+++|.+++.+ ++|+|++||.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~-i~~~~--q~-------~~lGtg~Av~~a~~~l~~------~~flvv~gD~l~~~~~~~~~ 143 (297)
T TIGR01105 80 RVKRQLLAEVQSICPPGVT-IMNVR--QA-------QPLGLGHSILCARPVVGD------NPFVVVLPDIIIDDATADPL 143 (297)
T ss_pred hcchhhhhhhhhcCCCCce-EEEee--CC-------CcCchHHHHHHHHHHhCC------CCEEEEECCeeccccccccc
Confidence 000011111 22322 22 246999999999999863 7899999999886
Q ss_pred -cChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeee----ccce---eeeeeecCCCC---CCceeeeeEEEEeHH
Q 014564 143 -MDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMA----VDTT---VLGLSKQEAEE---KPYIASMGVYLFKKE 211 (422)
Q Consensus 143 -~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~----~d~~---v~~~~~k~~~~---~~~~~~~Giy~~~~~ 211 (422)
.++.++++.|.++++.++++ .... +.+..|++..++ .+++ |.++.+||... .++++++|+|+|+++
T Consensus 144 ~~~l~~li~~~~~~~~~~~~~-~~~~--~~~~~yGvv~~~~~~d~~g~v~~I~~~~EKP~~~~~~~s~~~~~GiYi~~~~ 220 (297)
T TIGR01105 144 RYNLAAMIARFNETGRSQVLA-KRMP--GDLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSAD 220 (297)
T ss_pred hhHHHHHHHHHHHhCCcEEEE-EEcC--CCCccceEEEecccccCCCCeeeEeEEEECCCCcccCCcCEEEEEEEEECHH
Confidence 47889999997777666443 3332 126677766663 3454 58888898643 368999999999999
Q ss_pred HHHHHHhhhCCC--CCccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhc
Q 014564 212 ILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 212 ~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~l 266 (422)
+|+. ++...+. .+....++++.++++.+++++.++|+|+|+|+|++|++++..+
T Consensus 221 i~~~-l~~~~~~~~ge~~ltd~i~~l~~~~~v~~~~~~g~w~DiG~p~~~~~a~~~~ 276 (297)
T TIGR01105 221 IWAE-LERTEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKY 276 (297)
T ss_pred HHHH-HhcCCCCCCCeeeHHHHHHHHHhcCCEEEEEeccEEECCCCHHHHHHHHHHH
Confidence 9874 4443221 2233458899999999999999999999999999999998876
No 29
>cd06425 M1P_guanylylT_B_like_N N-terminal domain of the M1P-guanylyltransferase B-isoform like proteins. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain and a C-terminal Lefthanded-beta-Helix fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repression of GDP-mannose pyrophosphorylase in yeast leads to phenotypes, such as cell lysis, defective cell wall, and failure of polarized growth and cell separation.
Probab=100.00 E-value=2.6e-35 Score=269.35 Aligned_cols=232 Identities=22% Similarity=0.347 Sum_probs=191.7
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|++||||||.|+||+|+|...||+|+|++|+ |||+|++++|.++|+++++|+++++.+++.+|+.+. . .+++
T Consensus 1 m~~iIlAaG~g~R~~~lt~~~pK~llpv~g~-pli~~~l~~l~~~g~~~v~iv~~~~~~~~~~~l~~~---~--~~~~-- 72 (233)
T cd06425 1 MKALILVGGYGTRLRPLTLTVPKPLVEFCNK-PMIEHQIEALAKAGVKEIILAVNYRPEDMVPFLKEY---E--KKLG-- 72 (233)
T ss_pred CcEEEecCCCccccCccccCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEEeeeCHHHHHHHHhcc---c--ccCC--
Confidence 6899999999999999999999999999999 999999999999999999999999999999988641 1 1122
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCC
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
+++....+. ...|++++++.++.++... +++||+++||.+++.++.++++.|+++++++++++.+.++
T Consensus 73 -~~i~~~~~~-------~~~G~~~al~~a~~~~~~~----~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (233)
T cd06425 73 -IKITFSIET-------EPLGTAGPLALARDLLGDD----DEPFFVLNSDVICDFPLAELLDFHKKHGAEGTILVTKVED 140 (233)
T ss_pred -eEEEeccCC-------CCCccHHHHHHHHHHhccC----CCCEEEEeCCEeeCCCHHHHHHHHHHcCCCEEEEEEEcCC
Confidence 333332222 1359999999999988632 3789999999999999999999999999999998887654
Q ss_pred CCCcccCCceeeec-cceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEEEec
Q 014564 169 SEKPKGKDLKAMAV-DTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 247 (422)
Q Consensus 169 ~~k~~~~~~~~~~~-d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~ 247 (422)
+..+++..++. +++|.++.+||....+.++++|+|+|++++|+.+.+ ...+...++++.++++.++.+|+++
T Consensus 141 ---~~~~g~v~~d~~~~~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~~l~~----~~~~~~~~~~~~l~~~~~v~~~~~~ 213 (233)
T cd06425 141 ---PSKYGVVVHDENTGRIERFVEKPKVFVGNKINAGIYILNPSVLDRIPL----RPTSIEKEIFPKMASEGQLYAYELP 213 (233)
T ss_pred ---ccccCeEEEcCCCCEEEEEEECCCCCCCCEEEEEEEEECHHHHHhccc----CcccchhhhHHHHHhcCCEEEEeeC
Confidence 55566666776 679999999986555788999999999999975432 1223445789999999999999999
Q ss_pred ceEeecCCHHHHHHHHHhcc
Q 014564 248 DYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 248 ~~~~di~t~~~~~~a~~~ll 267 (422)
++|.|++||++|+++++.+|
T Consensus 214 g~w~digt~~~~~~a~~~~l 233 (233)
T cd06425 214 GFWMDIGQPKDFLKGMSLYL 233 (233)
T ss_pred CEEEcCCCHHHHHHHHHHhC
Confidence 99999999999999998764
No 30
>PRK10122 GalU regulator GalF; Provisional
Probab=100.00 E-value=2e-35 Score=277.38 Aligned_cols=242 Identities=16% Similarity=0.214 Sum_probs=187.5
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCC-----
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG----- 80 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~----- 80 (422)
|.+|+|||||||.||||+|||+.+||||+||+|| |||+|+|+++.++|+++|+|++++.++++.+|+...+.+.
T Consensus 1 ~~~mkavIlAaG~GtRl~PlT~~~PK~llpi~gk-piI~~~l~~l~~~Gi~~i~iv~~~~~~~i~~~~~~~~~l~~~~~~ 79 (297)
T PRK10122 1 MTNLKAVIPVAGLGMHMLPATKAIPKEMLPIVDK-PMIQYIVDEIVAAGIKEIVLVTHASKNAVENHFDTSYELESLLEQ 79 (297)
T ss_pred CCceEEEEECCcCCcccCcccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCChHHHHHHHhcchhHHHHHhh
Confidence 4579999999999999999999999999999999 9999999999999999999999999999999996432110
Q ss_pred -----------CCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeee-------
Q 014564 81 -----------SGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR------- 142 (422)
Q Consensus 81 -----------~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~------- 142 (422)
...+++ +.+....|. .++||++|++.+++++. +++|+|++||.+++
T Consensus 80 ~~k~~~l~~~~~~~~~~---~~i~~~~q~-------~~lGtg~al~~a~~~l~------~~~fvvi~gD~l~~~~~~~~~ 143 (297)
T PRK10122 80 RVKRQLLAEVQSICPPG---VTIMNVRQG-------QPLGLGHSILCARPAIG------DNPFVVVLPDVVIDDASADPL 143 (297)
T ss_pred cchhhhHHhhhhccCCC---ceEEEeecC-------CcCchHHHHHHHHHHcC------CCCEEEEECCeeccCcccccc
Confidence 000111 222222222 13699999999999985 37899999999886
Q ss_pred -cChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeee----ccc---eeeeeeecCCCC---CCceeeeeEEEEeHH
Q 014564 143 -MDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMA----VDT---TVLGLSKQEAEE---KPYIASMGVYLFKKE 211 (422)
Q Consensus 143 -~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~----~d~---~v~~~~~k~~~~---~~~~~~~Giy~~~~~ 211 (422)
.++.++++.|.+.+++++++....+ .+..+++...+ .++ +|.++.+||... .++++++|+|+|+++
T Consensus 144 ~~dl~~li~~h~~~~~~~~~~~~~~~---~~~~yGvv~~d~~~~~~g~v~~I~~~~EKp~~~~~~~s~~~~~GiYi~~~~ 220 (297)
T PRK10122 144 RYNLAAMIARFNETGRSQVLAKRMPG---DLSEYSVIQTKEPLDREGKVSRIVEFIEKPDQPQTLDSDLMAVGRYVLSAD 220 (297)
T ss_pred chhHHHHHHHHHHhCCcEEEEEECCC---CCCCceEEEecCcccCCCCeeeEEEEEECCCCcccCCccEEEEEEEEECHH
Confidence 4789999999887776544433222 35666666664 344 678899998643 367899999999999
Q ss_pred HHHHHHhhhCCC--CCccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhc-cC
Q 014564 212 ILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL-TA 268 (422)
Q Consensus 212 ~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~l-l~ 268 (422)
+|..+.+ ..+. .+.+..++++.++++.++.++.++|+|+|+|+|++|++++..+ ++
T Consensus 221 i~~~l~~-~~~~~~~e~~ltd~i~~l~~~~~v~~~~~~G~w~DiG~p~~~~~a~~~~~~~ 279 (297)
T PRK10122 221 IWPELER-TEPGAWGRIQLTDAIAELAKKQSVDAMLMTGDSYDCGKKMGYMQAFVKYGLR 279 (297)
T ss_pred HHHHHHh-CCCCCCCeeeHHHHHHHHHhCCCEEEEEeCCEEEcCCCHHHHHHHHHHHHhc
Confidence 9886533 2222 2334468899999999999999999999999999999999987 44
No 31
>PF00483 NTP_transferase: Nucleotidyl transferase This Prosite entry is only a sub-family of the Pfam entry.; InterPro: IPR005835 Nucleotidyl transferases transfer nucleotides from one compound to another. This domain is found in a number of enzymes that transfer nucleotides onto phosphosugars.; GO: 0016779 nucleotidyltransferase activity, 0009058 biosynthetic process; PDB: 1YP2_C 1YP4_D 1YP3_B 1H5S_D 1H5R_C 1H5T_C 2E3D_B 1JYL_C 1JYK_A 1MP5_C ....
Probab=100.00 E-value=2.7e-35 Score=271.95 Aligned_cols=238 Identities=35% Similarity=0.610 Sum_probs=189.7
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEee-cChHHHHHHHHhhccCCCCcccCCC
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
||||||||.|+||+|||...||||+|++|++|||+|+|++|.++|++++++|+. ++.+++.+|+++.+ .++..
T Consensus 1 kavIla~G~GtRl~plt~~~pK~ll~i~g~~pli~~~l~~l~~~g~~~ii~V~~~~~~~~i~~~~~~~~------~~~~~ 74 (248)
T PF00483_consen 1 KAVILAGGKGTRLRPLTDTIPKPLLPIGGKYPLIDYVLENLANAGIKEIIVVVNGYKEEQIEEHLGSGY------KFGVK 74 (248)
T ss_dssp EEEEEEESCCGGGTTTTTTSSGGGSEETTEEEHHHHHHHHHHHTTCSEEEEEEETTTHHHHHHHHTTSG------GGTEE
T ss_pred CEEEECCCCCccCchhhhccccccceecCCCcchhhhhhhhcccCCceEEEEEeecccccccccccccc------ccccc
Confidence 799999999999999999999999999999899999999999999999655555 77788999987543 22211
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCc--EEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGAD--ITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~--~tl~~~~~ 166 (422)
+.++..... .||++||+.++.++.... .+++||+++||++++.++.++++.|++++++ +++...+.
T Consensus 75 -i~~i~~~~~---------~Gta~al~~a~~~i~~~~--~~~~~lv~~gD~i~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 142 (248)
T PF00483_consen 75 -IEYIVQPEP---------LGTAGALLQALDFIEEED--DDEDFLVLNGDIIFDDDLQDMLEFHRESNADGTVTLLVVPV 142 (248)
T ss_dssp -EEEEEESSS---------SCHHHHHHHTHHHHTTSE--E-SEEEEETTEEEESTTHHHHHHHHHHHSSCESEEEEEEES
T ss_pred -ceeeecccc---------cchhHHHHHHHHHhhhcc--ccceEEEEeccccccchhhhHHHhhhccccccccccccccc
Confidence 333332222 499999999999998510 0134999999999999999999999998884 45555554
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCCC-CceeeeeEEEEeHHHHHHHHh--hhCCCCCccccchhhhhcccC-cee
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEEK-PYIASMGVYLFKKEILLNLLR--WRFPTANDFGSEIIPASANEQ-FLK 242 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~-~~~~~~Giy~~~~~~l~~ll~--~~~~~~~~~~~~~l~~l~~~~-~i~ 242 (422)
++ ++.+++...+.+++|.+|.+||.... +.++++|+|+|++++|..+++ ......+.+..++++.++++. .+.
T Consensus 143 ~~---~~~~g~v~~d~~~~V~~~~EKP~~~~~~~~~~~G~Y~~~~~~~~~~~~~~~~~~~~~~~l~d~i~~~~~~~~~~~ 219 (248)
T PF00483_consen 143 ED---PSRYGVVEVDEDGRVIRIVEKPDNPNASNLINTGIYIFKPEIFDFLLEMIKENARGEDFLTDAIPKLLEQGKKVY 219 (248)
T ss_dssp SG---GGGSEEEEEETTSEEEEEEESCSSHSHSSEEEEEEEEEETHHHHHHHHHHHTCTTSSHHHHHHHHHHHHTTCEEE
T ss_pred cc---cccceeeeeccceeEEEEeccCcccccceeccCceEEEcchHHHHHhhhhhccchhhhHHHHHHHHHHHcCCceE
Confidence 44 66777778888899999999998766 789999999999999987654 222335566678999998876 555
Q ss_pred EEEecc--eEeecCCHHHHHHHHHhccC
Q 014564 243 AYLFND--YWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 243 ~~~~~~--~~~di~t~~~~~~a~~~ll~ 268 (422)
++.+.+ +|.|+|+|++|++|++++++
T Consensus 220 ~~~~~~~~~w~dig~~~~~~~a~~~~~~ 247 (248)
T PF00483_consen 220 AFIFEGNAYWIDIGTPEDYLEANMDLLN 247 (248)
T ss_dssp EEEHSSEE-EEETSSHHHHHHHHHHHHS
T ss_pred EEEecCCeEEEECCCHHHHHHHHHHHhc
Confidence 778888 79999999999999998875
No 32
>PRK15480 glucose-1-phosphate thymidylyltransferase RfbA; Provisional
Probab=100.00 E-value=2.4e-34 Score=268.69 Aligned_cols=235 Identities=22% Similarity=0.350 Sum_probs=186.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeec-ChHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQY-NSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~-~~~~i~~~l~~~~~~~~~~~ 84 (422)
|+.|+|||||||.||||+|+|..+||||+||+|| |||+|+|+.|..+|+++|+|++.+ ..+.+++++.+ +.+
T Consensus 1 m~~~kaIILAgG~GtRL~PlT~~~pK~Llpv~gk-PmI~~~l~~l~~aGi~~I~ii~~~~~~~~~~~~l~~------g~~ 73 (292)
T PRK15480 1 MKTRKGIILAGGSGTRLYPVTMAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQ 73 (292)
T ss_pred CCceEEEEECCCcccccCcccCCCCceEeEECCE-EHHHHHHHHHHHCCCCEEEEEecCCchHHHHHHHcC------ccc
Confidence 5579999999999999999999999999999999 999999999999999999988764 45677777743 334
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCee-eecChHHHHHHHHHcCCcEEEEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
|+.. +.+.. +. .+.|+++|+..+.+++.+ ++|+++.||.+ ++.++.++++.|.++++++|++.
T Consensus 74 ~g~~-i~y~~--q~-------~~~Gta~Al~~a~~~i~~------~~~~lv~gD~i~~~~~l~~ll~~~~~~~~~~tv~~ 137 (292)
T PRK15480 74 WGLN-LQYKV--QP-------SPDGLAQAFIIGEEFIGG------DDCALVLGDNIFYGHDLPKLMEAAVNKESGATVFA 137 (292)
T ss_pred cCce-eEEEE--CC-------CCCCHHHHHHHHHHHhCC------CCEEEEECCeeeeccCHHHHHHHHHhCCCCeEEEE
Confidence 5433 22222 22 135999999999999863 67899999975 57889999999988888888888
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC--CCccccchhhhhcccCce
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFL 241 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~i 241 (422)
.++++ |..+++..++.+++|.++.+||....++++++|+|+|++++++. ++...++ .+....++++.++++.++
T Consensus 138 ~~v~~---p~~yGvv~~d~~g~v~~i~EKP~~p~s~~a~~GiY~~~~~v~~~-~~~~~~~~~ge~~itd~~~~~l~~g~~ 213 (292)
T PRK15480 138 YHVND---PERYGVVEFDQNGTAISLEEKPLQPKSNYAVTGLYFYDNDVVEM-AKNLKPSARGELEITDINRIYMEQGRL 213 (292)
T ss_pred EEcCC---cccCcEEEECCCCcEEEEEECCCCCCCCEEEEEEEEEChHHHHH-HhhcCCCCCCeeEhHHHHHHHHhcCCe
Confidence 77765 77777777777789999999997777889999999999998874 4432222 222346788888887766
Q ss_pred eE-EEecc-eEeecCCHHHHHHHHHhcc
Q 014564 242 KA-YLFND-YWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 242 ~~-~~~~~-~~~di~t~~~~~~a~~~ll 267 (422)
.. +...+ .|.|+|||++|.+++..+.
T Consensus 214 ~~~~~~~g~~W~DiGt~~~l~~a~~~~~ 241 (292)
T PRK15480 214 SVAMMGRGYAWLDTGTHQSLIEASNFIA 241 (292)
T ss_pred EEEEecCCcEEECCCCHHHHHHHHHHHH
Confidence 44 45567 4999999999999998775
No 33
>cd06428 M1P_guanylylT_A_like_N N-terminal domain of M1P_guanylyl_A_ like proteins are likely to be a isoform of GDP-mannose pyrophosphorylase. N-terminal domain of the M1P-guanylyltransferase A-isoform like proteins: The proteins of this family are likely to be a isoform of GDP-mannose pyrophosphorylase. Their sequences are highly conserved with mannose-1-phosphate guanyltransferase, but generally about 40-60 bases longer. GDP-mannose pyrophosphorylase (GTP: alpha-d-mannose-1-phosphate guanyltransferase) catalyzes the formation of GDP-d-mannose from GTP and alpha-d-mannose-1-Phosphate. It contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain. GDP-d-mannose is the activated form of mannose for formation of cell wall lipoarabinomannan and various mannose-containing glycolipids and polysaccharides. The function of GDP-mannose pyrophosphorylase is essential for cell wall integrity, morphogenesis and viability. Repre
Probab=100.00 E-value=4e-34 Score=265.27 Aligned_cols=235 Identities=23% Similarity=0.338 Sum_probs=187.5
Q ss_pred EEEEcCC--CCccCCcccccCcCcceeeCCcceeehhhhhhhhh-cCCcEEEEEeecChHHHHHHHHhhccCCCCcccCC
Q 014564 11 AVILGGG--AGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN-SGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 11 aVILAaG--~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~-~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
||||||| .|+||+|||..+||||+|++|+ |||+|+|++|.+ +|+++++|++++..+++.+|+.+.. ..++.
T Consensus 1 ~iIla~G~~~GtRl~plt~~~PK~llpv~g~-plI~~~l~~l~~~~gi~~i~iv~~~~~~~i~~~l~~~~-----~~~~~ 74 (257)
T cd06428 1 AVILVGGPQKGTRFRPLSLDVPKPLFPVAGK-PMIHHHIEACAKVPDLKEVLLIGFYPESVFSDFISDAQ-----QEFNV 74 (257)
T ss_pred CEEEccCCCCCcccCCccCCCCcccCeECCe-eHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHhcc-----cccCc
Confidence 6999999 8999999999999999999999 999999999999 6999999999999999999986421 01121
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
. +.++...+ ..||++++..+++++... ..++|+|++||++++.++.++++.|+++++++|+++.+..
T Consensus 75 ~-i~~~~~~~---------~~Gt~~al~~a~~~l~~~---~~~~~lv~~gD~~~~~dl~~~~~~h~~~~~~~tl~~~~~~ 141 (257)
T cd06428 75 P-IRYLQEYK---------PLGTAGGLYHFRDQILAG---NPSAFFVLNADVCCDFPLQELLEFHKKHGASGTILGTEAS 141 (257)
T ss_pred e-EEEecCCc---------cCCcHHHHHHHHHHhhcc---CCCCEEEEcCCeecCCCHHHHHHHHHHcCCCEEEEEEEcc
Confidence 1 22222111 359999999999988531 1378999999999999999999999998899988887653
Q ss_pred CCCCcccCCceeee-ccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC------------------CCccc
Q 014564 168 DSEKPKGKDLKAMA-VDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT------------------ANDFG 228 (422)
Q Consensus 168 ~~~k~~~~~~~~~~-~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~------------------~~~~~ 228 (422)
. +.+..+++..++ .+++|..+.+||....+.++++|+|+|++++|+.+ ....+. ..++.
T Consensus 142 ~-~~~~~yg~v~~d~~~g~v~~~~Ekp~~~~~~~~~~Giyi~~~~~~~~i-~~~~~~~~~e~~~~~~~~~~~~~~~~~~~ 219 (257)
T cd06428 142 R-EQASNYGCIVEDPSTGEVLHYVEKPETFVSDLINCGVYLFSPEIFDTI-KKAFQSRQQEAQLGDDNNREGRAEVIRLE 219 (257)
T ss_pred c-cccccccEEEEeCCCCeEEEEEeCCCCcccceEEEEEEEECHHHHHHH-hhhccccccccccccccccccccceeeeh
Confidence 2 124455666666 56799999999876667899999999999998644 322111 11244
Q ss_pred cchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhc
Q 014564 229 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 229 ~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~l 266 (422)
.++++.++++.++++|+++|+|.|++||++|+++++.+
T Consensus 220 ~d~~~~l~~~~~v~~~~~~g~w~dig~~~~~~~a~~~~ 257 (257)
T cd06428 220 QDVLTPLAGSGKLYVYKTDDFWSQIKTAGSAIYANRLY 257 (257)
T ss_pred hhhhhHHhccCCEEEecCCCeeecCCCHHHHHhHhhcC
Confidence 68999999989999999999999999999999999753
No 34
>TIGR01207 rmlA glucose-1-phosphate thymidylyltransferase, short form. This model describes a tightly conserved but broadly distributed subfamily (here designated as short form) of known and putative bacterial glucose-1-phosphate thymidylyltransferases. It is well characterized in several species as the first of four enzymes involved in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.
Probab=100.00 E-value=1.3e-33 Score=263.46 Aligned_cols=231 Identities=23% Similarity=0.389 Sum_probs=184.5
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEee-cChHHHHHHHHhhccCCCCcccCCC
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ-YNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~-~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
+|||||||.|+||+|+|..+||+|+||+|| |||+|+|+.|..+|+++|+|++. +..+.+++++.. +..|+..
T Consensus 1 kaIILAgG~GtRL~plT~~~pK~Llpv~gk-PmI~~~L~~l~~aGi~~I~iv~~~~~~~~~~~~lg~------g~~~g~~ 73 (286)
T TIGR01207 1 KGIILAGGSGTRLYPITRAVSKQLLPIYDK-PMIYYPLSTLMLAGIRDILIISTPQDTPRFQQLLGD------GSQWGVN 73 (286)
T ss_pred CEEEECCCCCccCCcccCCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEecCCcHHHHHHHhcc------ccccCce
Confidence 689999999999999999999999999999 99999999999999999998885 455677777643 3345433
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
+....+. .+.|+++|++.+++++.+ ++|+++.||. +++.++.++++.|.+.+++++++..+++
T Consensus 74 ---i~~~~q~-------~~~Gta~al~~a~~~l~~------~~~~li~gD~i~~~~~l~~ll~~~~~~~~~~ti~~~~v~ 137 (286)
T TIGR01207 74 ---LSYAVQP-------SPDGLAQAFIIGEDFIGG------DPSALVLGDNIFYGHDLSDLLKRAAARESGATVFAYQVS 137 (286)
T ss_pred ---EEEEEcc-------CCCCHHHHHHHHHHHhCC------CCEEEEECCEeccccCHHHHHHHHHhcCCCcEEEEEEcc
Confidence 2222222 136999999999999963 7888999997 4577899999999888888888888776
Q ss_pred CCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC--CCccccchhhhhcccCceeEEE
Q 014564 168 DSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAYL 245 (422)
Q Consensus 168 ~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~i~~~~ 245 (422)
+ |..+++..++.+++|.++.+||....++++++|+|+|++++++ +++...++ .+.+..++++.++++.++..+.
T Consensus 138 ~---p~~yGvv~~d~~g~V~~i~EKp~~~~s~~~~~GiYi~~~~i~~-~l~~~~~~~~ge~eitdv~~~~l~~g~l~v~~ 213 (286)
T TIGR01207 138 D---PERYGVVEFDSNGRAISIEEKPAQPKSNYAVTGLYFYDNRVVE-IARQLKPSARGELEITDLNRVYLEEGRLSVEL 213 (286)
T ss_pred C---HHHCceEEECCCCeEEEEEECCCCCCCCEEEEEEEEEchHHHH-HHhhcCCCCCCcEeHHHHHHHHHHcCCcEEEE
Confidence 5 7777777777778999999999766678999999999999876 44443222 2233458888888887666655
Q ss_pred e-cce-EeecCCHHHHHHHHHhcc
Q 014564 246 F-NDY-WEDIGTIRSFFEANLALT 267 (422)
Q Consensus 246 ~-~~~-~~di~t~~~~~~a~~~ll 267 (422)
+ .|+ |.|+|||++|++++..+.
T Consensus 214 ~~~g~~W~DiGt~~~l~~A~~~~~ 237 (286)
T TIGR01207 214 LGRGYAWLDTGTHDSLLEASNFIQ 237 (286)
T ss_pred ecCCCEEEeCCCHHHHHHHHHHHH
Confidence 5 575 999999999999997664
No 35
>cd02538 G1P_TT_short G1P_TT_short is the short form of glucose-1-phosphate thymidylyltransferase. This family is the short form of glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The homotetrameric, feedback inhibited short form is found in numerous bacterial species that produce dTDP-L-rhamnose. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.
Probab=100.00 E-value=1.5e-33 Score=258.77 Aligned_cols=231 Identities=23% Similarity=0.345 Sum_probs=183.5
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecC-hHHHHHHHHhhccCCCCcccCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYN-SASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|++++++++++. .+++.+|+.. +..|+
T Consensus 1 m~~iIlAaG~gtRl~plt~~~pK~llpv~~~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~l~~------~~~~~- 72 (240)
T cd02538 1 MKGIILAGGSGTRLYPLTKVVSKQLLPVYDK-PMIYYPLSTLMLAGIREILIISTPEDLPLFKELLGD------GSDLG- 72 (240)
T ss_pred CeEEEEcCcCcccCCccccCCCceeeEECCE-EhHHHHHHHHHHCCCCEEEEEeCcchHHHHHHHHhc------ccccC-
Confidence 6899999999999999999999999999999 9999999999999999999998754 4778888753 22333
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeee-ecChHHHHHHHHHcCCcEEEEEeec
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLY-RMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~-~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
+.+....+. ...|++++++.++++++ .++|++++||.++ +.++.++++.|.++++++++++.+.
T Consensus 73 --~~i~~~~~~-------~~~G~~~al~~a~~~~~------~~~~lv~~gD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (240)
T cd02538 73 --IRITYAVQP-------KPGGLAQAFIIGEEFIG------DDPVCLILGDNIFYGQGLSPILQRAAAQKEGATVFGYEV 137 (240)
T ss_pred --ceEEEeeCC-------CCCCHHHHHHHHHHhcC------CCCEEEEECCEEEccHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 222222222 13599999999999886 3789999999854 5679999999988888888888776
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC--CCccccchhhhhcccCceeEE
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANEQFLKAY 244 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~--~~~~~~~~l~~l~~~~~i~~~ 244 (422)
.+ |..+++..++.+++|.++.+||......++++|+|+|++++|+ .++..... .+.+..++++.++++.++.++
T Consensus 138 ~~---~~~~g~v~~d~~g~v~~~~ekp~~~~~~~~~~Giyi~~~~~l~-~l~~~~~~~~~~~~l~d~~~~l~~~g~~~~~ 213 (240)
T cd02538 138 ND---PERYGVVEFDENGRVLSIEEKPKKPKSNYAVTGLYFYDNDVFE-IAKQLKPSARGELEITDVNNEYLEKGKLSVE 213 (240)
T ss_pred Cc---hhcCceEEecCCCcEEEEEECCCCCCCCeEEEEEEEECHHHHH-HHHhcCCCCCCeEEhHHHHHHHHHhCCeEEE
Confidence 55 5556666777778999999998766677899999999999885 55533221 223335888998888777777
Q ss_pred Eec--ceEeecCCHHHHHHHHHhc
Q 014564 245 LFN--DYWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 245 ~~~--~~~~di~t~~~~~~a~~~l 266 (422)
.++ ++|.|++||++|+++++.+
T Consensus 214 ~~~~~g~w~digt~~~~~~a~~~~ 237 (240)
T cd02538 214 LLGRGFAWLDTGTHESLLEASNFV 237 (240)
T ss_pred EeCCCcEEEeCCCHHHHHHHHHHH
Confidence 766 9999999999999999865
No 36
>TIGR02623 G1P_cyt_trans glucose-1-phosphate cytidylyltransferase. Members of this family are the enzyme glucose-1-phosphate cytidylyltransferase, also called CDP-glucose pyrophosphorylase, the product of the rfbF gene.
Probab=100.00 E-value=4.4e-33 Score=257.15 Aligned_cols=233 Identities=23% Similarity=0.291 Sum_probs=185.2
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC--C
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--D 87 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~--~ 87 (422)
+|||||||.|+||+|+|..+||||+||+|+ |||+|+|+.|.++|+++|+|++++..+++.+++.+....+.+..+. .
T Consensus 1 kavilaaG~gtRl~~~t~~~pK~llpv~g~-pii~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~ 79 (254)
T TIGR02623 1 KAVILAGGLGTRISEETHLRPKPMVEIGGK-PILWHIMKIYSHHGINDFIICCGYKGYVIKEYFANYFLHMSDVTFHMAD 79 (254)
T ss_pred CEEEEcCccccccCccccCCCcceeEECCE-EHHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHHHhhhhcccCeeEEecc
Confidence 589999999999999999999999999999 9999999999999999999999999999999986521011111110 0
Q ss_pred ------------CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHc
Q 014564 88 ------------GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (422)
Q Consensus 88 ------------~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~ 155 (422)
..+.+.. + ..+.||+++++.+++++. +++|++++||.+++.++.++++.|.+.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~--~-------~~~~gt~~al~~~~~~i~------~e~flv~~gD~i~~~dl~~~~~~h~~~ 144 (254)
T TIGR02623 80 NTMEVHHKRVEPWRVTLVD--T-------GESTQTGGRLKRVREYLD------DEAFCFTYGDGVADIDIKALIAFHRKH 144 (254)
T ss_pred cccccccccCCccceeeee--c-------CCcCCcHHHHHHHHHhcC------CCeEEEEeCCeEecCCHHHHHHHHHHc
Confidence 0011111 1 123699999999999886 389999999999999999999999998
Q ss_pred CCcEEEEEeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhh
Q 014564 156 GADITISCLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPAS 235 (422)
Q Consensus 156 ~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l 235 (422)
++++|++..+ + +..++...++ +++|+.|.+||... +.++++|+|+|++++|+ .++.. ..++..++++.+
T Consensus 145 ~~d~tl~~~~--~---~~~yG~v~~d-~~~V~~~~Ekp~~~-~~~i~~Giyi~~~~il~-~l~~~---~~~~~~d~i~~l 213 (254)
T TIGR02623 145 GKKATVTAVQ--P---PGRFGALDLE-GEQVTSFQEKPLGD-GGWINGGFFVLNPSVLD-LIDGD---ATVWEQEPLETL 213 (254)
T ss_pred CCCEEEEEec--C---CCcccEEEEC-CCeEEEEEeCCCCC-CCeEEEEEEEEcHHHHh-hcccc---CchhhhhHHHHH
Confidence 8888876542 2 4455555555 45899999998644 57899999999999985 55432 235567899999
Q ss_pred cccCceeEEEecceEeecCCHHHHHHHHHhccCC
Q 014564 236 ANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 269 (422)
Q Consensus 236 ~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~ 269 (422)
+++.++.++.++|+|.|++||++|.+++..+...
T Consensus 214 ~~~~~v~~~~~~g~w~dIgt~~~~~~~~~~~~~~ 247 (254)
T TIGR02623 214 AQRGELSAYEHSGFWQPMDTLRDKNYLEELWESG 247 (254)
T ss_pred HhCCCEEEEeCCCEEecCCchHHHHHHHHHHHcC
Confidence 9988999999999999999999999999887653
No 37
>PRK13389 UTP--glucose-1-phosphate uridylyltransferase subunit GalU; Provisional
Probab=100.00 E-value=1.3e-32 Score=258.80 Aligned_cols=248 Identities=20% Similarity=0.300 Sum_probs=190.3
Q ss_pred CccccccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCC
Q 014564 1 MEKRDARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG 80 (422)
Q Consensus 1 ~~~~~~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~ 80 (422)
|..-+.+-|+|||||||.|+||+|+|..+||+|+|++|+ |+|+|+|++|.++|+++|+|++++..+++.+|+...+.|.
T Consensus 1 ~~~~~~~~~~aiIlaaG~g~Rl~~~t~~~pK~l~pv~g~-pii~~~l~~l~~~gi~~i~vv~~~~~~~i~~~~~~~~~~~ 79 (302)
T PRK13389 1 MAAINTKVKKAVIPVAGLGTRMLPATKAIPKEMLPLVDK-PLIQYVVNECIAAGITEIVLVTHSSKNSIENHFDTSFELE 79 (302)
T ss_pred CccccccceEEEEECCcCCccCCCccCCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHccchhhh
Confidence 444455668999999999999999999999999999999 9999999999999999999999999999999996422121
Q ss_pred CC--cccC----CC-------eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeee-----
Q 014564 81 SG--VTFG----DG-------CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR----- 142 (422)
Q Consensus 81 ~~--~~~~----~~-------~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~----- 142 (422)
.. .++. .+ ...+....|. ...|+++|++.+++++. +++|+|++||.+++
T Consensus 80 ~~l~~~~~~~~~~e~~~i~~~~~~i~~~~q~-------~~~Gtg~Av~~a~~~~~------~~~~lVl~gD~~~~~~~~~ 146 (302)
T PRK13389 80 AMLEKRVKRQLLDEVQSICPPHVTIMQVRQG-------LAKGLGHAVLCAHPVVG------DEPVAVILPDVILDEYESD 146 (302)
T ss_pred hhhhhhhhhHHHHhhhhccccCceEEEeecC-------CCCChHHHHHHHHHHcC------CCCEEEEeCcceecccccc
Confidence 00 0000 00 0111111111 24699999999998875 37899999999874
Q ss_pred ---cChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeeec-------cceeeeeeecCC--CCCCceeeeeEEEEeH
Q 014564 143 ---MDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAV-------DTTVLGLSKQEA--EEKPYIASMGVYLFKK 210 (422)
Q Consensus 143 ---~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~-------d~~v~~~~~k~~--~~~~~~~~~Giy~~~~ 210 (422)
.++.++++.|.+.+++ ++++.+.++ +..+++..++. +++|..+.+||. ...+.++++|+|+|++
T Consensus 147 ~~~~dl~~l~~~h~~~~~~-tl~~~~~~~---~~~yGvv~~~~~~~~~~~~~~V~~~~EKp~~~~~~s~~~~~GiYi~~~ 222 (302)
T PRK13389 147 LSQDNLAEMIRRFDETGHS-QIMVEPVAD---VTAYGVVDCKGVELAPGESVPMVGVVEKPKADVAPSNLAIVGRYVLSA 222 (302)
T ss_pred cccccHHHHHHHHHhcCCC-EEEEEEccc---CCcceEEEecCcccccCCcceEEEEEECCCCCCCCccEEEEEEEEECH
Confidence 6899999999887776 566666644 55666555542 347999999986 3346889999999999
Q ss_pred HHHHHHHhhhCC--CCCccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhcc
Q 014564 211 EILLNLLRWRFP--TANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 211 ~~l~~ll~~~~~--~~~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll 267 (422)
++|+ +++.... ..+.+..++++.++++.++.+|+++|+|.|+++|++|++++..+.
T Consensus 223 ~il~-~l~~~~~~~~~e~~l~d~i~~l~~~~~v~~~~~~G~w~DIGtpe~~~~a~~~~~ 280 (302)
T PRK13389 223 DIWP-LLAKTPPGAGDEIQLTDAIDMLIEKETVEAYHMKGKSHDCGNKLGYMQAFVEYG 280 (302)
T ss_pred HHHH-HHHhCCCCCCCeeeHHHHHHHHHHcCCEEEEEeeeEEEeCCCHHHHHHHHHHHH
Confidence 9985 5554322 233455789999998889999999999999999999999998874
No 38
>cd04189 G1P_TT_long G1P_TT_long represents the long form of glucose-1-phosphate thymidylyltransferase. This family is the long form of Glucose-1-phosphate thymidylyltransferase. Glucose-1-phosphate thymidylyltransferase catalyses the formation of dTDP-glucose, from dTTP and glucose 1-phosphate. It is the first enzyme in the biosynthesis of dTDP-L-rhamnose, a cell wall constituent and a feedback inhibitor of the enzyme.There are two forms of Glucose-1-phosphate thymidylyltransferase in bacteria and archeae; short form and long form. The long form, which has an extra 50 amino acids c-terminal, is found in many species for which it serves as a sugar-activating enzyme for antibiotic biosynthesis and or other, unknown pathways, and in which dTDP-L-rhamnose is not necessarily produced.The long from enzymes also have a left-handed parallel helix domain at the c-terminus, whereas, th eshort form enzymes do not have this domain. The homotetrameric, feedback inhibited short form is found in
Probab=100.00 E-value=3.9e-32 Score=248.98 Aligned_cols=232 Identities=24% Similarity=0.369 Sum_probs=185.9
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+|++|.++|+++++|++++..+++.+++.+.. +|+..
T Consensus 1 m~avIlAaG~g~Rl~plt~~~pK~l~~i~g~-~li~~~l~~l~~~~~~~i~vv~~~~~~~~~~~~~~~~------~~~~~ 73 (236)
T cd04189 1 MKGLILAGGKGTRLRPLTYTRPKQLIPVAGK-PIIQYAIEDLREAGIEDIGIVVGPTGEEIKEALGDGS------RFGVR 73 (236)
T ss_pred CeEEEECCCccccccccccCCCceeeEECCc-chHHHHHHHHHHCCCCEEEEEcCCCHHHHHHHhcchh------hcCCe
Confidence 7899999999999999999999999999999 9999999999999999999999998899999886432 22222
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCC
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
+.++.... ..|++++++.+..++. .++|++++||++++.++.++++.|.++++++++++.+..+
T Consensus 74 -i~~~~~~~---------~~g~~~sl~~a~~~i~------~~~~li~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (236)
T cd04189 74 -ITYILQEE---------PLGLAHAVLAARDFLG------DEPFVVYLGDNLIQEGISPLVRDFLEEDADASILLAEVED 137 (236)
T ss_pred -EEEEECCC---------CCChHHHHHHHHHhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCceEEEEEECCC
Confidence 22332211 3589999999998885 3789999999999999999999998888888888877654
Q ss_pred CCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCC--CCccccchhhhhccc-CceeEEE
Q 014564 169 SEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPT--ANDFGSEIIPASANE-QFLKAYL 245 (422)
Q Consensus 169 ~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~--~~~~~~~~l~~l~~~-~~i~~~~ 245 (422)
+..+++..++ +++|.++.+|+....+.+.++|+|+|++++++.+ +..... .+.+..++++.++++ .++.+++
T Consensus 138 ---~~~~g~~~~d-~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~~l-~~~~~~~~~~~~~~d~~~~~i~~g~~v~~~~ 212 (236)
T cd04189 138 ---PRRFGVAVVD-DGRIVRLVEKPKEPPSNLALVGVYAFTPAIFDAI-SRLKPSWRGELEITDAIQWLIDRGRRVGYSI 212 (236)
T ss_pred ---cccceEEEEc-CCeEEEEEECCCCCCCCEEEEEEEEeCHHHHHHH-HhcCCCCCCeEEHHHHHHHHHHcCCcEEEEE
Confidence 4444444444 3589999888765546788999999999998754 332121 223345788888854 6799999
Q ss_pred ecceEeecCCHHHHHHHHHhccC
Q 014564 246 FNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 246 ~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
++++|.+++||++|.++++.+++
T Consensus 213 ~~~~~~~i~t~~dl~~a~~~~l~ 235 (236)
T cd04189 213 VTGWWKDTGTPEDLLEANRLLLD 235 (236)
T ss_pred cCceEEeCCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 39
>cd02541 UGPase_prokaryotic Prokaryotic UGPase catalyses the synthesis of UDP-glucose. Prokaryotic UDP-Glucose Pyrophosphorylase (UGPase) catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans. UGPase is found in both prokaryotes and eukaryotes, although prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity.
Probab=100.00 E-value=5.9e-32 Score=252.29 Aligned_cols=240 Identities=22% Similarity=0.261 Sum_probs=181.7
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCC-----CCc
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (422)
|+|||||||.|+||+|+|..+||||+|++|+ |||+|+|+++.++|+++++|+++++.+++.+|+...+.+. .+.
T Consensus 1 mkaiIlAaG~gtRl~plt~~~pK~llpv~gk-pli~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (267)
T cd02541 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PVIQYIVEEAVAAGIEDIIIVTGRGKRAIEDHFDRSYELEETLEKKGK 79 (267)
T ss_pred CeEEEEcCCCCccCCCcccCCCceeeEECCE-EHHHHHHHHHHHCCCCEEEEEeCCchHHHHHHhCCcHHHHHHHHhccc
Confidence 6899999999999999999999999999999 9999999999999999999999999999999985422110 000
Q ss_pred c----------cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeec---ChHHHHH
Q 014564 84 T----------FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQ 150 (422)
Q Consensus 84 ~----------~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~ll~ 150 (422)
. .+.. +.+.. +. ++.|++++++.++.+++ .++|+|++||.++.. ++.++++
T Consensus 80 ~~~~~~~~~~~~~~~-i~~~~--~~-------~~~Gt~~al~~~~~~i~------~~~~lv~~gD~~~~~~~~~~~~l~~ 143 (267)
T cd02541 80 TDLLEEVRIISDLAN-IHYVR--QK-------EPLGLGHAVLCAKPFIG------DEPFAVLLGDDLIDSKEPCLKQLIE 143 (267)
T ss_pred HHHhhhhhcccCCce-EEEEE--cC-------CCCChHHHHHHHHHHhC------CCceEEEECCeEEeCCchHHHHHHH
Confidence 0 0101 22221 11 23699999999999886 378999999997754 4899999
Q ss_pred HHHHcCCcEEEEEeecCCCCCcccCCceeeec----cceeeeeeecCCC--CCCceeeeeEEEEeHHHHHHHHhhhCC-C
Q 014564 151 NHRQSGADITISCLPMDDSEKPKGKDLKAMAV----DTTVLGLSKQEAE--EKPYIASMGVYLFKKEILLNLLRWRFP-T 223 (422)
Q Consensus 151 ~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~----d~~v~~~~~k~~~--~~~~~~~~Giy~~~~~~l~~ll~~~~~-~ 223 (422)
.|+++++++ +++.+.+. +.+..+++..++. +++|..+.+||.. ..+.++++|+|+|++++|..+.+.... .
T Consensus 144 ~~~~~~~~~-~~~~~~~~-~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~ 221 (267)
T cd02541 144 AYEKTGASV-IAVEEVPP-EDVSKYGIVKGEKIDGDVFKVKGLVEKPKPEEAPSNLAIVGRYVLTPDIFDILENTKPGKG 221 (267)
T ss_pred HHHHhCCCE-EEEEEcCh-hcCccceEEEeecCCCCceEEeEEEECCCCCCCCCceEEEEEEEcCHHHHHHHHhCCCCCC
Confidence 998766654 44444432 1244555555664 2379999998752 345788999999999998755331111 1
Q ss_pred CCccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhcc
Q 014564 224 ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 224 ~~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll 267 (422)
.+.+..++++.++++.++++++++|+|.|++||++|+++++.+.
T Consensus 222 ~e~~~~d~i~~l~~~~~v~~~~~~g~w~digt~~~y~~a~~~~~ 265 (267)
T cd02541 222 GEIQLTDAIAKLLEEEPVYAYVFEGKRYDCGNKLGYLKATVEFA 265 (267)
T ss_pred CcEEHHHHHHHHHhcCCEEEEEeeeEEEeCCCHHHHHHHHHHHh
Confidence 23344578999998889999999999999999999999999874
No 40
>cd06422 NTP_transferase_like_1 NTP_transferase_like_1 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=100.00 E-value=1.9e-32 Score=248.36 Aligned_cols=219 Identities=21% Similarity=0.316 Sum_probs=175.8
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCe
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (422)
+|||||||.|+||+|||..+||||+|++|+ |||+|+|++|.++|+++|+|+++++.+++.+|+.+. .|+
T Consensus 1 kaiIlaaG~g~Rl~plt~~~pK~llpi~g~-~li~~~l~~l~~~gi~~i~iv~~~~~~~i~~~~~~~-------~~~--- 69 (221)
T cd06422 1 KAMILAAGLGTRMRPLTDTRPKPLVPVAGK-PLIDHALDRLAAAGIRRIVVNTHHLADQIEAHLGDS-------RFG--- 69 (221)
T ss_pred CEEEEcCCCCCccccccCCCCCceeeECCE-EHHHHHHHHHHHCCCCEEEEEccCCHHHHHHHHhcc-------cCC---
Confidence 589999999999999999999999999999 999999999999999999999999999999998641 122
Q ss_pred EEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHH--HcCCcEEEEEeecC
Q 014564 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHR--QSGADITISCLPMD 167 (422)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~--~~~~~~tl~~~~~~ 167 (422)
+.+....+.. ...|++++++.++.++. .++|++++||++++.++.++++.|. +.++.+++...+.+
T Consensus 70 ~~i~~~~~~~------~~~g~~~~l~~~~~~~~------~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (221)
T cd06422 70 LRITISDEPD------ELLETGGGIKKALPLLG------DEPFLVVNGDILWDGDLAPLLLLHAWRMDALLLLLPLVRNP 137 (221)
T ss_pred ceEEEecCCC------cccccHHHHHHHHHhcC------CCCEEEEeCCeeeCCCHHHHHHHHHhccCCCceEEEEEEcC
Confidence 2232222210 13589999999999886 3789999999999999999999997 45556666555544
Q ss_pred CCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEEEec
Q 014564 168 DSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFN 247 (422)
Q Consensus 168 ~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~ 247 (422)
. +..++...++.+++|..+.+++. ..++++|+|+|++++|..+.+. .....++++.++++.++.+++++
T Consensus 138 ~---~~~~g~v~~d~~~~v~~~~~~~~---~~~~~~Giyi~~~~~l~~l~~~-----~~~~~d~~~~l~~~~~~~~~~~~ 206 (221)
T cd06422 138 G---HNGVGDFSLDADGRLRRGGGGAV---APFTFTGIQILSPELFAGIPPG-----KFSLNPLWDRAIAAGRLFGLVYD 206 (221)
T ss_pred C---CCCcceEEECCCCcEeecccCCC---CceEEEEEEEEcHHHHhhCCcC-----cccHHHHHHHHHHcCCeEEEecC
Confidence 3 44445556666788999988865 3788999999999988754322 23345789999988899999999
Q ss_pred ceEeecCCHHHHHHH
Q 014564 248 DYWEDIGTIRSFFEA 262 (422)
Q Consensus 248 ~~~~di~t~~~~~~a 262 (422)
++|.|++||++|.++
T Consensus 207 g~w~di~t~~~~~~a 221 (221)
T cd06422 207 GLWFDVGTPERLLAA 221 (221)
T ss_pred CEEEcCCCHHHHhhC
Confidence 999999999999864
No 41
>cd02524 G1P_cytidylyltransferase G1P_cytidylyltransferase catalyzes the production of CDP-D-Glucose. Alpha-D-Glucose-1-phosphate Cytidylyltransferase catalyzes the production of CDP-D-Glucose from alpha-D-Glucose-1-phosphate and MgCTP as substrate. CDP-D-Glucose is the precursor for synthesizing four of the five naturally occurring 3,6-dideoxy sugars-abequose (3,6-dideoxy-D-Xylo-hexose), ascarylose (3,6-dideoxy-L-arabino-hexose), paratose (3,6-dideoxy-D-ribohexose), and tyvelose (3,6-dideoxy-D-arabino-hexose. Deoxysugars are ubiquitous in nature where they function in a variety of biological processes, including cell adhesion, immune response, determination of ABO blood groups, fertilization, antibiotic function, and microbial pathogenicity.
Probab=100.00 E-value=9e-32 Score=248.82 Aligned_cols=242 Identities=19% Similarity=0.256 Sum_probs=186.1
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC--CC
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG--DG 88 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~--~~ 88 (422)
|||||||.|+||+|+|..+||||+|++|+ |||+|+++.+.++|+++|+|++++..+++.+|+.+....+....+. ..
T Consensus 1 aiilaaG~g~Rl~plt~~~pK~llpv~~~-p~i~~~~~~~~~~gi~~i~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 79 (253)
T cd02524 1 VVILAGGLGTRLSEETELKPKPMVEIGGR-PILWHIMKIYSHYGHNDFILCLGYKGHVIKEYFLNYFLHNSDVTIDLGTN 79 (253)
T ss_pred CEEEecCCccccCCccCCCCceEEEECCE-EHHHHHHHHHHhCCCceEEEECCCCHHHHHHHHHhhhhhcCceeEeeccc
Confidence 69999999999999999999999999999 9999999999999999999999999999999997643111111111 00
Q ss_pred eEEEeccCCCC-C--cCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEee
Q 014564 89 CVEVLAATQTP-G--EAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 89 ~v~i~~~~~~~-~--~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~ 165 (422)
.+.+..+.... . ........|++++++.+++++.+ +++|++++||++++.++.++++.|...+++++++...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~t~~al~~a~~~~~~-----~~~~lv~~gD~i~~~dl~~ll~~h~~~~~~~tl~~~~ 154 (253)
T cd02524 80 RIELHNSDIEDWKVTLVDTGLNTMTGGRLKRVRRYLGD-----DETFMLTYGDGVSDVNINALIEFHRSHGKLATVTAVH 154 (253)
T ss_pred ceeeecccccccceeecccCcccccHHHHHHHHHhcCC-----CCeEEEEcCCEEECCCHHHHHHHHHHcCCCEEEEEec
Confidence 12222211000 0 00001134799999999998852 2789999999999999999999999888888876653
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEEE
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYL 245 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~~ 245 (422)
+ +..++...++.+++|..+.+|+... +.++++|+|+|++++++.+ +.. ..++..++++.++++.++.+++
T Consensus 155 --~---~~~~g~v~~d~~g~V~~~~ekp~~~-~~~i~~Giyi~~~~l~~~l-~~~---~~~~~~d~l~~li~~~~v~~~~ 224 (253)
T cd02524 155 --P---PGRFGELDLDDDGQVTSFTEKPQGD-GGWINGGFFVLEPEVFDYI-DGD---DTVFEREPLERLAKDGELMAYK 224 (253)
T ss_pred --C---CCcccEEEECCCCCEEEEEECCCCC-CceEEEEEEEECHHHHHhh-ccc---cchhhHHHHHHHHhcCCEEEEe
Confidence 1 3445555666678999999997644 4688999999999988643 332 3345568999999988999999
Q ss_pred ecceEeecCCHHHHHHHHHhccC
Q 014564 246 FNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 246 ~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
++|+|.+|+|+.+|..+...+..
T Consensus 225 ~~g~w~~I~t~~~~~~~~~~~~~ 247 (253)
T cd02524 225 HTGFWQCMDTLRDKQTLEELWNS 247 (253)
T ss_pred cCCEEEeCcCHHHHHHHHHHHHc
Confidence 99999999999999999977744
No 42
>TIGR01099 galU UTP-glucose-1-phosphate uridylyltransferase. Built to distinquish between the highly similar genes galU and galF
Probab=100.00 E-value=1.7e-31 Score=248.32 Aligned_cols=238 Identities=19% Similarity=0.217 Sum_probs=178.0
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCC-----CCc
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYG-----SGV 83 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~-----~~~ 83 (422)
|+|||||||.|+||+|||..+||||+|++|+ |||+|+|++|.++|+++++|++++..+++.+|+.+.+.+. .+.
T Consensus 1 m~avIlAaG~gtRl~plt~~~pK~llpi~g~-pli~~~l~~l~~~gi~~v~iv~~~~~~~i~~~~~~~~~~~~~~~~~~~ 79 (260)
T TIGR01099 1 RKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYVVEEAVEAGIEDILIVTGRGKRAIEDHFDTSYELEHQLEKRGK 79 (260)
T ss_pred CeEEEEcccCcccCCCcccCCCceeEEECCE-EHHHHHHHHHHhCCCCEEEEEeCCcHHHHHHHhcccHHHHHHHHhhhh
Confidence 6899999999999999999999999999999 9999999999999999999999999999999986422110 000
Q ss_pred ccC-------CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeec---ChHHHHHHHH
Q 014564 84 TFG-------DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM---DYMDFVQNHR 153 (422)
Q Consensus 84 ~~~-------~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~---~l~~ll~~~~ 153 (422)
.|. .....+....+. .+.|++++++.+.+++. +++|++++||.++.. ++.++++.|.
T Consensus 80 ~~~~~~~~~~~~~~~i~~~~~~-------~~~G~~~al~~~~~~~~------~~~~lv~~gD~~~~~~~~~~~~l~~~~~ 146 (260)
T TIGR01099 80 EELLKEVRSISPLATIFYVRQK-------EQKGLGHAVLCAEPFVG------DEPFAVILGDDIVVSEEPALKQMIDLYE 146 (260)
T ss_pred HHHHHHhhhccccceEEEEecC-------CCCCHHHHHHHHHHhhC------CCCEEEEeccceecCCcHHHHHHHHHHH
Confidence 000 000111111111 23699999999999885 388999999997654 6999999998
Q ss_pred HcCCcEEEEEeecCCCCCcccCCceeeec----cceeeeeeecCC--CCCCceeeeeEEEEeHHHHHHHHhhhCC-CCCc
Q 014564 154 QSGADITISCLPMDDSEKPKGKDLKAMAV----DTTVLGLSKQEA--EEKPYIASMGVYLFKKEILLNLLRWRFP-TAND 226 (422)
Q Consensus 154 ~~~~~~tl~~~~~~~~~k~~~~~~~~~~~----d~~v~~~~~k~~--~~~~~~~~~Giy~~~~~~l~~ll~~~~~-~~~~ 226 (422)
++++++ +++...+. +.+..+++..++. +++|..+.+||. ...+.++++|+|+|++++|..+.+.... ..+.
T Consensus 147 ~~~~~i-i~~~~~~~-~~~~~~g~v~~d~~~~~~~~v~~~~Ekp~~~~~~~~~~~~Giyi~~~~~~~~l~~~~~~~~~~~ 224 (260)
T TIGR01099 147 KYGCSI-IAVEEVPK-EEVSKYGVIDGEGVEEGLYEIKDMVEKPKPEEAPSNLAIVGRYVLTPDIFDLLEETPPGAGGEI 224 (260)
T ss_pred HhCCCE-EEEEECCh-hhcccCceEEeccccCCceeEEEEEECCCCCCCCCceEEEEEEECCHHHHHHHHhCCCCCCCce
Confidence 888775 44444332 2245556555542 258999999984 2345789999999999998765432211 1233
Q ss_pred cccchhhhhcccCceeEEEecceEeecCCHHHHHHH
Q 014564 227 FGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEA 262 (422)
Q Consensus 227 ~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a 262 (422)
+..++++.++++.++++|+++|+|.|+++|++|+++
T Consensus 225 ~l~d~i~~l~~~~~v~~~~~~g~w~digs~~~y~~a 260 (260)
T TIGR01099 225 QLTDALRKLLEKETVYAYKFKGKRYDCGSKLGYLKA 260 (260)
T ss_pred eHHHHHHHHHhcCCEEEEEcceEEEeCCCHHHHhhC
Confidence 345789999988899999999999999999999864
No 43
>cd06915 NTP_transferase_WcbM_like WcbM_like is a subfamily of nucleotidyl transferases. WcbM protein of Burkholderia mallei is involved in the biosynthesis, export or translocation of capsule. It is a subfamily of nucleotidyl transferases that transfer nucleotides onto phosphosugars.
Probab=99.98 E-value=3.3e-31 Score=240.61 Aligned_cols=222 Identities=25% Similarity=0.405 Sum_probs=178.9
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++++.++|+++++|+++++.+++.+++.+.+ .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~v~vv~~~~~~~i~~~~~~~~------~~~~~-~ 72 (223)
T cd06915 1 AVILAGGLGTRLRSVVKDLPKPLAPVAGR-PFLEYLLEYLARQGISRIVLSVGYLAEQIEEYFGDGY------RGGIR-I 72 (223)
T ss_pred CEEecCCcccccCcccCCCCccccEECCc-chHHHHHHHHHHCCCCEEEEEcccCHHHHHHHHcCcc------ccCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888886422 12211 2
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
.+.... . ..|++++++.+++++. .++|++++||++++.++.++++.|++.+.++++++.+.++
T Consensus 73 ~~~~~~-~--------~~G~~~~l~~a~~~~~------~~~~lv~~~D~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 135 (223)
T cd06915 73 YYVIEP-E--------PLGTGGAIKNALPKLP------EDQFLVLNGDTYFDVDLLALLAALRASGADATMALRRVPD-- 135 (223)
T ss_pred EEEECC-C--------CCcchHHHHHHHhhcC------CCCEEEEECCcccCCCHHHHHHHHHhCCCcEEEEEEECCC--
Confidence 222211 1 2599999999998884 3899999999998889999999998878888887776543
Q ss_pred CcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEEEecceE
Q 014564 171 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYW 250 (422)
Q Consensus 171 k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 250 (422)
+..++...++.+++|..+.+++....+++.++|+|+|++++|..+.+. ..++..++++.++++.++.+++++++|
T Consensus 136 -~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~l~~~~~~----~~~~~~~~~~~l~~~~~v~~~~~~~~~ 210 (223)
T cd06915 136 -ASRYGNVTVDGDGRVIAFVEKGPGAAPGLINGGVYLLRKEILAEIPAD----AFSLEADVLPALVKRGRLYGFEVDGYF 210 (223)
T ss_pred -CCcceeEEECCCCeEEEEEeCCCCCCCCcEEEEEEEECHHHHhhCCcc----CCChHHHHHHHHHhcCcEEEEecCCeE
Confidence 333444455666799999988765556788999999999998754221 234456788988877799999999999
Q ss_pred eecCCHHHHHHH
Q 014564 251 EDIGTIRSFFEA 262 (422)
Q Consensus 251 ~di~t~~~~~~a 262 (422)
.|+++++||..+
T Consensus 211 ~dI~t~~dl~~a 222 (223)
T cd06915 211 IDIGIPEDYARA 222 (223)
T ss_pred EecCCHHHHHhh
Confidence 999999999987
No 44
>cd04181 NTP_transferase NTP_transferases catalyze the transfer of nucleotides onto phosphosugars. Nucleotidyltransferases transfer nucleotides onto phosphosugars. The enzyme family includes Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase. The products are activated sugars that are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides.
Probab=99.98 E-value=9.4e-31 Score=236.61 Aligned_cols=217 Identities=30% Similarity=0.516 Sum_probs=177.8
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|+|...||+|+|++|+ |||+|+++.|.++|+++++|++++..+++++++.+.. .|+.. +
T Consensus 1 aiIlaaG~g~R~~~~t~~~pK~ll~v~g~-pli~~~l~~l~~~g~~~i~vv~~~~~~~i~~~~~~~~------~~~~~-i 72 (217)
T cd04181 1 AVILAAGKGTRLRPLTDTRPKPLLPIAGK-PILEYIIERLARAGIDEIILVVGYLGEQIEEYFGDGS------KFGVN-I 72 (217)
T ss_pred CEEecCCccccccccccCCCccccEECCe-eHHHHHHHHHHHCCCCEEEEEeccCHHHHHHHHcChh------hcCce-E
Confidence 69999999999999999999999999999 9999999999999999999999998888888886432 12211 3
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
.++.... ..|++++++.++.++. .++|++++||++++.++.++++.|.++++++++++.+.++
T Consensus 73 ~~~~~~~---------~~g~~~al~~~~~~~~------~~~~lv~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 135 (217)
T cd04181 73 EYVVQEE---------PLGTAGAVRNAEDFLG------DDDFLVVNGDVLTDLDLSELLRFHREKGADATIAVKEVED-- 135 (217)
T ss_pred EEEeCCC---------CCccHHHHHHhhhhcC------CCCEEEEECCeecCcCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 3332211 2589999999998883 4899999999999999999999999888899888877653
Q ss_pred CcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEEEecceE
Q 014564 171 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAYLFNDYW 250 (422)
Q Consensus 171 k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~~~~~~~ 250 (422)
+..+++..++.+++|..+.+|+......++++|+|+|++++++ .++......+.+..++++.++++.++++++++|+|
T Consensus 136 -~~~~~~v~~d~~~~v~~~~ek~~~~~~~~~~~Giy~~~~~~~~-~l~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~g~w 213 (217)
T cd04181 136 -PSRYGVVELDDDGRVTRFVEKPTLPESNLANAGIYIFEPEILD-YIPEILPRGEDELTDAIPLLIEEGKVYGYPVDGYW 213 (217)
T ss_pred -CCcceEEEEcCCCcEEEEEECCCCCCCCEEEEEEEEECHHHHH-hhhhcCCcccccHHHHHHHHHhcCCEEEEEcCCEE
Confidence 5555556666668999999998765568899999999999885 45443223456667899999988999999999999
Q ss_pred eecC
Q 014564 251 EDIG 254 (422)
Q Consensus 251 ~di~ 254 (422)
.|++
T Consensus 214 ~dig 217 (217)
T cd04181 214 LDIG 217 (217)
T ss_pred ecCC
Confidence 9986
No 45
>cd06426 NTP_transferase_like_2 NTP_trnasferase_like_2 is a member of the nucleotidyl transferase family. This is a subfamily of nucleotidyl transferases. Nucleotidyl transferases transfer nucleotides onto phosphosugars. The activated sugars are precursors for synthesis of lipopolysaccharide, glycolipids and polysaccharides. Other subfamilies of nucleotidyl transferases include Alpha-D-Glucose-1-Phosphate Cytidylyltransferase, Mannose-1-phosphate guanyltransferase, and Glucose-1-phosphate thymidylyltransferase.
Probab=99.97 E-value=4.5e-30 Score=232.76 Aligned_cols=219 Identities=22% Similarity=0.413 Sum_probs=171.4
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|+|...||+|+|++|+ |||+|+|++|.++|+++++|++++..+++++|+.+. .+|+.. +
T Consensus 1 ~vIlaaG~g~R~~plt~~~pK~ll~~~g~-pli~~~l~~l~~~~~~~iivv~~~~~~~i~~~~~~~------~~~~~~-i 72 (220)
T cd06426 1 VVIMAGGKGTRLRPLTENTPKPMLKVGGK-PILETIIDRFIAQGFRNFYISVNYLAEMIEDYFGDG------SKFGVN-I 72 (220)
T ss_pred CEEecCCCccccCcccCCCCCccCeECCc-chHHHHHHHHHHCCCcEEEEECccCHHHHHHHHCCc------cccCcc-E
Confidence 69999999999999999999999999999 999999999999999999999999888888887542 223322 2
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
.++.... +.|+++++..+.+.. .++|+|++||.+++.++.++++.|+.+++++++++.+...
T Consensus 73 ~~~~~~~---------~~g~~~~l~~~~~~~-------~~~~lv~~~D~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~-- 134 (220)
T cd06426 73 SYVREDK---------PLGTAGALSLLPEKP-------TDPFLVMNGDILTNLNYEHLLDFHKENNADATVCVREYEV-- 134 (220)
T ss_pred EEEECCC---------CCcchHHHHHHHhhC-------CCCEEEEcCCEeeccCHHHHHHHHHhcCCCEEEEEEEcCC--
Confidence 2222111 258999998766544 3889999999999999999999999888888887766432
Q ss_pred CcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhccc-CceeEEEecce
Q 014564 171 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE-QFLKAYLFNDY 249 (422)
Q Consensus 171 k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~-~~i~~~~~~~~ 249 (422)
+..+++...+ +++|.++.+|+.. +.++++|+|+|++++++.+ +. ..+....++++.++++ .++.+++++++
T Consensus 135 -~~~~g~~~~d-~~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~i-~~---~~~~~l~~~~~~~i~~~~~i~~~~~~~~ 206 (220)
T cd06426 135 -QVPYGVVETE-GGRITSIEEKPTH--SFLVNAGIYVLEPEVLDLI-PK---NEFFDMPDLIEKLIKEGKKVGVFPIHEY 206 (220)
T ss_pred -CCcceEEEEC-CCEEEEEEECCCC--CCeEEEEEEEEcHHHHhhc-CC---CCCcCHHHHHHHHHHCCCcEEEEEeCCe
Confidence 2233444444 3789999988754 4678999999999988743 22 2222245788888765 67999999999
Q ss_pred EeecCCHHHHHHHH
Q 014564 250 WEDIGTIRSFFEAN 263 (422)
Q Consensus 250 ~~di~t~~~~~~a~ 263 (422)
|.|++||++|.+++
T Consensus 207 w~~igt~~dl~~a~ 220 (220)
T cd06426 207 WLDIGRPEDYEKAN 220 (220)
T ss_pred EEeCCCHHHHHhhC
Confidence 99999999999875
No 46
>COG1210 GalU UDP-glucose pyrophosphorylase [Cell envelope biogenesis, outer membrane]
Probab=99.97 E-value=3.2e-30 Score=227.58 Aligned_cols=247 Identities=21% Similarity=0.279 Sum_probs=191.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCC---
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSG--- 82 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~--- 82 (422)
++.++|||+|||.||||.|.|+..||-||||.+| |+|+|+++.+.++||+++++|++.....+.+|++.++.+...
T Consensus 2 ~~irKAViPaAGlGTRfLPATKaiPKEMLPIvdK-P~IqYiVeEa~~aGIe~i~iVTgr~K~~IeDhFD~s~ELE~~L~~ 80 (291)
T COG1210 2 MKIRKAVIPAAGLGTRFLPATKAIPKEMLPIVDK-PLIQYIVEEAVAAGIEEILIVTGRGKRAIEDHFDTSYELENTLEK 80 (291)
T ss_pred CcccEEEEEccCcccccccccccCchhhccccCc-hhHHHHHHHHHHcCCCEEEEEecCCcchHHHhCcCcHHHHHHHHH
Confidence 3457999999999999999999999999999999 999999999999999999999999999999998754322111
Q ss_pred --c-cc----C--CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC---hHHHHH
Q 014564 83 --V-TF----G--DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD---YMDFVQ 150 (422)
Q Consensus 83 --~-~~----~--~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~---l~~ll~ 150 (422)
+ .+ . ...+.+....|. .++|.++|+..|++++.+ ++|.|+.+|.++... +++|++
T Consensus 81 ~~K~~~L~~v~~i~~~~~i~~vRQ~-------e~~GLGhAVl~A~~~vg~------EpFaVlL~Ddl~~~~~~~l~qmi~ 147 (291)
T COG1210 81 RGKRELLEEVRSIPPLVTISFVRQK-------EPLGLGHAVLCAKPFVGD------EPFAVLLPDDLVDSEKPCLKQMIE 147 (291)
T ss_pred hCHHHHHHHHHhcccCceEEEEecC-------CCCcchhHHHhhhhhcCC------CceEEEeCCeeecCCchHHHHHHH
Confidence 0 00 0 112333333333 357999999999999984 999999999987753 788999
Q ss_pred HHHHcCCcEEEEEeecCCCCCcccCCcee----eecc-ceeeeeeecCC--CCCCceeeeeEEEEeHHHHHHHHhhhCCC
Q 014564 151 NHRQSGADITISCLPMDDSEKPKGKDLKA----MAVD-TTVLGLSKQEA--EEKPYIASMGVYLFKKEILLNLLRWRFPT 223 (422)
Q Consensus 151 ~~~~~~~~~tl~~~~~~~~~k~~~~~~~~----~~~d-~~v~~~~~k~~--~~~~~~~~~Giy~~~~~~l~~ll~~~~~~ 223 (422)
.+.+.+.++ +.+.+++. +..+.|+++. ++.+ .+|..+.|||. ...+++...|-|+|++++|+ +++.....
T Consensus 148 ~ye~~g~sv-i~v~ev~~-e~v~kYGvi~~g~~~~~~~~~v~~~VEKP~~~~APSnlai~GRYil~p~IFd-~L~~~~~G 224 (291)
T COG1210 148 LYEETGGSV-IGVEEVPP-EDVSKYGVIDPGEPVEKGVYKVKGMVEKPKPEEAPSNLAIVGRYVLTPEIFD-ILEETKPG 224 (291)
T ss_pred HHHHhCCcE-EEEEECCH-HHCcccceEecCccccCCeEEEEEEEECCCCCCCCcceeeeeeeecCHHHHH-HHhhCCCC
Confidence 888877754 55555543 2244555443 2222 37889999985 35689999999999999998 56654332
Q ss_pred --CCccccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhccCC
Q 014564 224 --ANDFGSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 269 (422)
Q Consensus 224 --~~~~~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~ 269 (422)
.+-...|.+..+++.+.++++.+.|..+|+|++..|.+++..+..+
T Consensus 225 ~ggEiQLTDai~~L~~~~~v~a~~~~GkryD~G~k~Gyi~a~v~~~l~ 272 (291)
T COG1210 225 AGGEIQLTDAIKKLLKKEPVLAYVFEGKRYDCGSKLGYIKANVEFALR 272 (291)
T ss_pred CCCEeeHHHHHHHHHhhCcEEEEEecccEEccCCcccHHHHHHHHHhh
Confidence 3445578889999999999999999999999999999999887543
No 47
>cd02508 ADP_Glucose_PP ADP-glucose pyrophosphorylase is involved in the biosynthesis of glycogen or starch. ADP-glucose pyrophosphorylase (glucose-1-phosphate adenylyltransferase) catalyzes a very important step in the biosynthesis of alpha 1,4-glucans (glycogen or starch) in bacteria and plants: synthesis of the activated glucosyl donor, ADP-glucose, from glucose-1-phosphate and ATP. ADP-glucose pyrophosphorylase is a tetrameric allosterically regulated enzyme. While a homotetramer in bacteria, in plant chloroplasts and amyloplasts, it is a heterotetramer of two different, yet evolutionary related, subunits. There are a number of conserved regions in the sequence of bacterial and plant ADP-glucose pyrophosphorylase subunits. It is a subfamily of a very diverse glycosy transferase family 2.
Probab=99.97 E-value=7e-29 Score=221.32 Aligned_cols=199 Identities=51% Similarity=0.821 Sum_probs=156.9
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|+|...||+|+|++|++|||+|+|+++.++|+++++|+++++.+++.+++.+...|+.. .....+
T Consensus 1 avILAaG~gtRl~plt~~~pK~llpv~g~~pli~~~l~~l~~~gi~~iivv~~~~~~~i~~~~~~~~~~~~~--~~~~~~ 78 (200)
T cd02508 1 AIILAGGEGTRLSPLTKKRAKPAVPFGGRYRLIDFPLSNMVNSGIRNVGVLTQYKSRSLNDHLGSGKEWDLD--RKNGGL 78 (200)
T ss_pred CEEeCCCCCcccchhhcCCcceeeEECCeeeeHHHHHHHHHHCCCCEEEEEeCCChHHHHHHHhCCCcccCC--CCCCCE
Confidence 699999999999999999999999999976899999999999999999999999999999998653222111 001123
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
.++...+.. .+.+..||+++++.+..++.+. ..++|+|++||++++.++.++++.|+++++++|+++.
T Consensus 79 ~~~~~~~~~---~~~~~~Gta~al~~a~~~i~~~---~~~~~lv~~gD~v~~~~~~~~l~~~~~~~~~~t~~~~------ 146 (200)
T cd02508 79 FILPPQQRK---GGDWYRGTADAIYQNLDYIERS---DPEYVLILSGDHIYNMDYREMLDFHIESGADITVVYK------ 146 (200)
T ss_pred EEeCcccCC---CCCcccCcHHHHHHHHHHHHhC---CCCEEEEecCCEEEecCHHHHHHHHHHcCCCEEEEEh------
Confidence 444322210 1123579999999999988531 1378999999999999999999999988888877543
Q ss_pred CcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhC-CCCCccccchhhhhcccCceeEEEecce
Q 014564 171 KPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRF-PTANDFGSEIIPASANEQFLKAYLFNDY 249 (422)
Q Consensus 171 k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~-~~~~~~~~~~l~~l~~~~~i~~~~~~~~ 249 (422)
+++|+|+|++++|..+++... ...+++..|+++.++++.++++++++|+
T Consensus 147 ------------------------------~~~g~yi~~~~~~~~~l~~~~~~~~~~~~~d~i~~l~~~~~v~~~~~~g~ 196 (200)
T cd02508 147 ------------------------------ASMGIYIFSKDLLIELLEEDAADGSHDFGKDIIPAMLKKLKIYAYEFNGY 196 (200)
T ss_pred ------------------------------hcCEEEEEEHHHHHHHHHHHhccCcchhHHHHHHHHhccCcEEEEEeCCe
Confidence 368999999999876665532 2245666799999999999999999999
Q ss_pred Eeec
Q 014564 250 WEDI 253 (422)
Q Consensus 250 ~~di 253 (422)
|.|+
T Consensus 197 w~di 200 (200)
T cd02508 197 WADI 200 (200)
T ss_pred EecC
Confidence 9986
No 48
>cd04197 eIF-2B_epsilon_N The N-terminal domain of epsilon subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of epsilon subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.96 E-value=1.6e-28 Score=221.82 Aligned_cols=186 Identities=17% Similarity=0.286 Sum_probs=142.5
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||+|||..+||||+||+|+ |||+|+|++|.++|+++|+|+++++.+++++|+++.+.++.. +...
T Consensus 1 ~~aiIla~G~g~Rl~plt~~~pK~llpi~g~-piI~~~l~~l~~~Gi~~I~iv~~~~~~~i~~~l~~~~~~~~~--~~~~ 77 (217)
T cd04197 1 LQAVVLADSFNRRFRPLTKEKPRCLLPLANV-PLIDYTLEFLALNGVEEVFVFCCSHSDQIKEYIEKSKWSKPK--SSLM 77 (217)
T ss_pred CeEEEEcCCCcccccccccCCCceeeEECCE-ehHHHHHHHHHHCCCCeEEEEeCCCHHHHHHHHhhccccccc--cCcc
Confidence 6899999999999999999999999999999 999999999999999999999999999999999764322211 1001
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHH--HHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHc-----CCcEEE
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS-----GADITI 161 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~-----~~~~tl 161 (422)
.+.++...+ +.|++++++... ..+ .++|++++||.+++.++.++++.|+++ ++++|+
T Consensus 78 ~i~~~~~~~---------~~~~~~al~~~~~~~~~-------~~~flv~~gD~i~~~dl~~~l~~h~~~~~~~~~a~~t~ 141 (217)
T cd04197 78 IVIIIMSED---------CRSLGDALRDLDAKGLI-------RGDFILVSGDVVSNIDLKEILEEHKERRKKDKNAIMTM 141 (217)
T ss_pred eEEEEeCCC---------cCccchHHHHHhhcccc-------CCCEEEEeCCeeeccCHHHHHHHHHHhhccccCceEEE
Confidence 133332221 247888886543 222 378999999999999999999999874 788888
Q ss_pred EEeecCCCCC---cccCCceeeecc-ceeeeeeecCCCC--------------------CCceeeeeEEEEeHHHH
Q 014564 162 SCLPMDDSEK---PKGKDLKAMAVD-TTVLGLSKQEAEE--------------------KPYIASMGVYLFKKEIL 213 (422)
Q Consensus 162 ~~~~~~~~~k---~~~~~~~~~~~d-~~v~~~~~k~~~~--------------------~~~~~~~Giy~~~~~~l 213 (422)
++.+.++.++ ...+++..++.+ ++|+.|.++|... ++++.++|+|+|++++|
T Consensus 142 ~~~~~~~~~~~~~~~~~~vv~~d~~~~~v~~~~ekp~~~~~~~~~~~~~~~~~~~~~~i~~~l~d~~iYi~~~~vl 217 (217)
T cd04197 142 VLKEASPPHRTRRTGEEFVIAVDPKTSRLLHYEELPGSKYRSITDLPSELLGSNSEVEIRHDLLDCHIDICSPDVL 217 (217)
T ss_pred EEEeCCCccccccCCCceEEEEcCCCCcEEEEecccCCCCccccccCHHHhcCCCcEEEECCceecCEEEeCCCCC
Confidence 8887765331 112345556655 7899999986432 37899999999998764
No 49
>cd02523 PC_cytidylyltransferase Phosphocholine cytidylyltransferases catalyze the synthesis of CDP-choline. This family contains proteins similar to prokaryotic phosphocholine (P-cho) cytidylyltransferases. Phosphocholine (PC) cytidylyltransferases catalyze the transfer of a cytidine monophosphate from CTP to phosphocholine to form CDP-choline. PC is the most abundant phospholipid in eukaryotic membranes and it is also important in prokaryotic membranes. For pathogenic prokaryotes, the cell surface PC facilitates the interaction with host surface and induces attachment and invasion. In addition cell wall PC serves as scaffold for a group of choline-binding proteins that are secreted from the cells. Phosphocholine (PC) cytidylyltransferase is a key enzyme in the prokaryotic choline metabolism pathway. It has been hypothesized to consist of a choline transport system, a choline kinase, CTP:phosphocholine cytidylyltransferase, and a choline phosphotransferase that transfers P-Cho from CDP
Probab=99.96 E-value=1.1e-27 Score=218.28 Aligned_cols=220 Identities=20% Similarity=0.271 Sum_probs=163.9
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||+|+|...||+|+|++|+ |||+|+|+.|.++|+++|+|+++++.+++.+|+.+. .+ +
T Consensus 1 aiIlAaG~g~Rl~~lt~~~pK~l~~~~g~-~li~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~----~~-------~ 68 (229)
T cd02523 1 AIILAAGRGSRLRPLTEDRPKCLLEINGK-PLLERQIETLKEAGIDDIVIVTGYKKEQIEELLKKY----PN-------I 68 (229)
T ss_pred CEEEeccCccccchhhCCCCceeeeECCE-EHHHHHHHHHHHCCCceEEEEeccCHHHHHHHHhcc----CC-------e
Confidence 69999999999999999999999999999 999999999999999999999999989998887531 11 3
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSE 170 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~ 170 (422)
.++...+.. ..|+++++..++.++. ++|++++||++++. ++++.|.+.+++.++++.+..+
T Consensus 69 ~~~~~~~~~-------~~g~~~s~~~~~~~~~-------~~~lv~~~D~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 129 (229)
T cd02523 69 KFVYNPDYA-------ETNNIYSLYLARDFLD-------EDFLLLEGDVVFDP---SILERLLSSPADNAILVDKKTK-- 129 (229)
T ss_pred EEEeCcchh-------hhCcHHHHHHHHHHcC-------CCEEEEeCCEecCH---HHHHHHHcCCCCCeEEEccCcc--
Confidence 344322210 2589999999998873 78999999998865 4677777778888888876332
Q ss_pred CcccCCceeeecc-ceeeeeeecCCCC-CCceeeeeEEEEeHHHHHHHHhh---hCC--CCCccccchhhhhcccCc--e
Q 014564 171 KPKGKDLKAMAVD-TTVLGLSKQEAEE-KPYIASMGVYLFKKEILLNLLRW---RFP--TANDFGSEIIPASANEQF--L 241 (422)
Q Consensus 171 k~~~~~~~~~~~d-~~v~~~~~k~~~~-~~~~~~~Giy~~~~~~l~~ll~~---~~~--~~~~~~~~~l~~l~~~~~--i 241 (422)
+....+.....+ +++..+.+++... ...+.++|+|+|+++++..+.+. ..+ ....+.+++++.++++.+ +
T Consensus 130 -~~~~~~~~~~~~~~~v~~~~~k~~~~~~~~~~~~Giy~~~~~~~~~l~~~~~~~~~~~~~~~~~~d~i~~l~~~~~~~v 208 (229)
T cd02523 130 -EWEDEYVKDLDDAGVLLGIISKAKNLEEIQGEYVGISKFSPEDADRLAEALEELIEAGRVNLYYEDALQRLISEEGVKV 208 (229)
T ss_pred -cccccceeeecCccceEeecccCCCcchhceEEEeEEEECHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCeeE
Confidence 111112222222 5788888776543 24678999999999988755332 111 234556788999887444 4
Q ss_pred eEEEecceEeecCCHHHHHHHH
Q 014564 242 KAYLFNDYWEDIGTIRSFFEAN 263 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~ 263 (422)
+.+.. ++|.|++++++|.+++
T Consensus 209 ~~~~~-~~w~dI~~~ed~~~a~ 229 (229)
T cd02523 209 KDISD-GFWYEIDDLEDLERAE 229 (229)
T ss_pred EEcCC-CCEEEeCCHHHHHhhC
Confidence 44555 8999999999999863
No 50
>cd04183 GT2_BcE_like GT2_BcbE_like is likely involved in the biosynthesis of the polysaccharide capsule. GT2_BcbE_like: The bcbE gene is one of the genes in the capsule biosynthetic locus of Pasteurella multocida. Its deducted product is likely involved in the biosynthesis of the polysaccharide capsule, which is found on surface of a wide range of bacteria. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=99.96 E-value=2.5e-27 Score=216.38 Aligned_cols=221 Identities=16% Similarity=0.225 Sum_probs=161.3
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhcc-CCCCcccCCCe
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYN-YGSGVTFGDGC 89 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~-~~~~~~~~~~~ 89 (422)
+||||||.|+||+|+|..+||||+|++|+ |||+|+|+.|.++|++++++++++.. ....++.+.+. ...+. .
T Consensus 1 ~iIlAaG~g~Rl~plt~~~pK~ll~i~g~-pli~~~l~~l~~~g~~~ivvv~~~~~-~~~~~~~~~~~~~~~~~----~- 73 (231)
T cd04183 1 IIIPMAGLGSRFKKAGYTYPKPLIEVDGK-PMIEWVIESLAKIFDSRFIFICRDEH-NTKFHLDESLKLLAPNA----T- 73 (231)
T ss_pred CEEECCcCCccccccCCCCCceeeEECCE-EHHHHHHHhhhccCCceEEEEEChHH-hhhhhHHHHHHHhCCCC----E-
Confidence 48999999999999999999999999999 99999999999999999999986432 11222222110 00111 1
Q ss_pred EEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCC
Q 014564 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDS 169 (422)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~ 169 (422)
+.+.+. . ..|+++++..++..+.. .++|++++||++++.++.++++.|.+.+.+.++++....
T Consensus 74 i~~~~~-~---------~~g~~~~l~~a~~~l~~-----~~~~lv~~~D~i~~~~~~~~~~~~~~~~~~~~i~~~~~~-- 136 (231)
T cd04183 74 VVELDG-E---------TLGAACTVLLAADLIDN-----DDPLLIFNCDQIVESDLLAFLAAFRERDLDGGVLTFFSS-- 136 (231)
T ss_pred EEEeCC-C---------CCcHHHHHHHHHhhcCC-----CCCEEEEecceeeccCHHHHHHHhhccCCceEEEEEeCC--
Confidence 222221 1 25999999999988852 378999999999999998999888777767666655442
Q ss_pred CCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHH-HHHHHHhhhC-----CCCCccccchhhhhccc-Ccee
Q 014564 170 EKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKE-ILLNLLRWRF-----PTANDFGSEIIPASANE-QFLK 242 (422)
Q Consensus 170 ~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~-~l~~ll~~~~-----~~~~~~~~~~l~~l~~~-~~i~ 242 (422)
...+++..++.+++|..+.+|+.. +.+.++|+|+|+++ .|.+.++... ...+.+..++++.++++ .++.
T Consensus 137 --~~~~~~v~~d~~~~v~~~~ek~~~--~~~~~~Giy~~~~~~~~~~~l~~~~~~~~~~~~~~~~~d~i~~~~~~g~~v~ 212 (231)
T cd04183 137 --HPRWSYVKLDENGRVIETAEKEPI--SDLATAGLYYFKSGSLFVEAAKKMIRKDDSVNGEFYISPLYNELILDGKKVG 212 (231)
T ss_pred --CCCeEEEEECCCCCEEEeEEcCCC--CCccEeEEEEECcHHHHHHHHHHHHhhcccccCcEEEhHHHHHHHHcCCEEE
Confidence 223445556667889998877542 46789999999987 5545555321 11233446788888865 5799
Q ss_pred EEEe-cceEeecCCHHHH
Q 014564 243 AYLF-NDYWEDIGTIRSF 259 (422)
Q Consensus 243 ~~~~-~~~~~di~t~~~~ 259 (422)
++.+ +++|.|++||++|
T Consensus 213 ~~~~~~~~w~di~t~~dl 230 (231)
T cd04183 213 IYLIDKDDYHSFGTPEDL 230 (231)
T ss_pred EEEeccccEEEcCChHhc
Confidence 9999 6999999999987
No 51
>cd02507 eIF-2B_gamma_N_like The N-terminal of eIF-2B_gamma_like is predicted to have glycosyltransferase activity. N-terminal domain of eEIF-2B epsilon and gamma, subunits of eukaryotic translation initiators, is a subfamily of glycosyltranferase 2 and is predicted to have glycosyltranferase activity. eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit epsilon shares sequence similarity with gamma subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.93 E-value=2.5e-25 Score=200.54 Aligned_cols=187 Identities=21% Similarity=0.334 Sum_probs=139.2
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+|++|.++|+++++|+++++.+++.+++.+.+.+ ..... .
T Consensus 1 ~~avIlagg~g~rl~plt~~~pK~llpv~g~-pli~~~l~~l~~~gi~~i~vv~~~~~~~~~~~~~~~~~~--~~~~~-~ 76 (216)
T cd02507 1 FQAVVLADGFGSRFLPLTSDIPKALLPVANV-PLIDYTLEWLEKAGVEEVFVVCCEHSQAIIEHLLKSKWS--SLSSK-M 76 (216)
T ss_pred CeEEEEeCCCccccCccccCCCcccceECCE-EHHHHHHHHHHHCCCCeEEEEeCCcHHHHHHHHHhcccc--cccCC-c
Confidence 6899999999999999999999999999999 999999999999999999999999999998988764311 00011 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHH--HHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQN--HRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~--~~~~~~~~tl~~~~~ 166 (422)
.+.+....+. .+.|++++++.++.++. ++|++++||++++.++.+++++ +...++++++.+...
T Consensus 77 ~v~~~~~~~~-------~~~Gta~~l~~~~~~i~-------~dflv~~gD~i~~~~l~~~l~~~r~~~~~~~~~~~~~~~ 142 (216)
T cd02507 77 IVDVITSDLC-------ESAGDALRLRDIRGLIR-------SDFLLLSCDLVSNIPLSELLEERRKKDKNAIATLTVLLA 142 (216)
T ss_pred eEEEEEccCC-------CCCccHHHHHHHhhcCC-------CCEEEEeCCEeecCCHHHHHHHHHhhCcccceEEEEEec
Confidence 1333332222 13699999999988773 7899999999999999999976 445566666655554
Q ss_pred CCCC------CcccCCceeeecc---ceeeeeeecCCC------------------CCCceeeeeEEEEeHHHH
Q 014564 167 DDSE------KPKGKDLKAMAVD---TTVLGLSKQEAE------------------EKPYIASMGVYLFKKEIL 213 (422)
Q Consensus 167 ~~~~------k~~~~~~~~~~~d---~~v~~~~~k~~~------------------~~~~~~~~Giy~~~~~~l 213 (422)
.+.. .++.+.+..++.+ .+++.+.+++.. .++++.++|+|+|+++++
T Consensus 143 ~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~~~~~i~~dl~D~~iyi~s~~Vl 216 (216)
T cd02507 143 SPPVSTEQSKKTEEEDVIAVDSKTQRLLLLHYEEDLDEDLELIIRKSLLSKHPNVTIRTDLLDCHIYICSPDVL 216 (216)
T ss_pred cCCCCccccccCCCCcEEEEcCCCCceEEEechhhcCcCcccccCHHHHhcCCCEEEEcCcccccEEEecCcCC
Confidence 3311 2334456677766 356666554322 356899999999998753
No 52
>cd02509 GDP-M1P_Guanylyltransferase GDP-M1P_Guanylyltransferase catalyzes the formation of GDP-Mannose. GDP-mannose-1-phosphate guanylyltransferase, also called GDP-mannose pyrophosphorylase (GDP-MP), catalyzes the formation of GDP-Mannose from mannose-1-phosphate and GTP. Mannose is a key monosaccharide for glycosylation of proteins and lipids. GDP-Mannose is the activated donor for mannosylation of various biomolecules. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase and mannose-1-phosphate guanylyltransferase. This CD covers the N-terminal GDP-mannose-1-phosphate guanylyltransferase domain, whereas the isomerase function is located at the C-terminal half. GDP-MP is a member of the nucleotidyltransferase family of enzymes.
Probab=99.93 E-value=3.7e-25 Score=206.18 Aligned_cols=225 Identities=19% Similarity=0.285 Sum_probs=158.8
Q ss_pred eeEEEEcCCCCccCCcccc-cCcCcceeeCC-cceeehhhhhhhhhc-CCcEEEEEeecCh-HHHHHHHHhhccCCCCcc
Q 014564 9 VAAVILGGGAGTRLYPLTK-QRAKPAVPIGG-AYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~-~~pK~Llpv~g-k~pli~~~l~~l~~~-gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (422)
|++||||||.|+||+|||. ..||+|+|++| + |||+++++++... ++++++|++++.. +.+++++.+ . ..+
T Consensus 1 m~~vILAgG~GtRl~PlS~~~~PK~ll~l~g~~-~li~~~l~~l~~~~~~~~i~vvt~~~~~~~v~~~l~~-~--~~~-- 74 (274)
T cd02509 1 IYPVILAGGSGTRLWPLSRESYPKQFLKLFGDK-SLLQQTLDRLKGLVPPDRILVVTNEEYRFLVREQLPE-G--LPE-- 74 (274)
T ss_pred CEEEEEcccccccCCcCCCCCCCceEeEcCCCC-cHHHHHHHHHhcCCCCCcEEEEechHHHHHHHHHHhh-c--CCC--
Confidence 6899999999999999996 69999999999 7 9999999999998 5999999998765 445555533 0 111
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeee--cChHHHHHHHHH---cCCcE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYR--MDYMDFVQNHRQ---SGADI 159 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~--~~l~~ll~~~~~---~~~~~ 159 (422)
+.++.+.. .+||++++..+..++... ..++.++|++||+++. .++.++++.+.+ +++.+
T Consensus 75 -----~~ii~ep~---------~~gTa~ai~~a~~~~~~~--~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~~~~~~~v 138 (274)
T cd02509 75 -----ENIILEPE---------GRNTAPAIALAALYLAKR--DPDAVLLVLPSDHLIEDVEAFLKAVKKAVEAAEEGYLV 138 (274)
T ss_pred -----ceEEECCC---------CCCcHHHHHHHHHHHHhc--CCCCeEEEecchhcccCHHHHHHHHHHHHHHHHcCCEE
Confidence 33433222 259999999999888631 1246899999999775 346666665443 55677
Q ss_pred EEEEeecCCCCCcccCCceeeeccc-----eeeeeeecCCCC--------CCceeeeeEEEEeHHHHHHHHhhhCCCC--
Q 014564 160 TISCLPMDDSEKPKGKDLKAMAVDT-----TVLGLSKQEAEE--------KPYIASMGVYLFKKEILLNLLRWRFPTA-- 224 (422)
Q Consensus 160 tl~~~~~~~~~k~~~~~~~~~~~d~-----~v~~~~~k~~~~--------~~~~~~~Giy~~~~~~l~~ll~~~~~~~-- 224 (422)
|+.+.+..+ .++|++...+.+. +|..|.|||... ..+++++|+|+|+++.|...+++..+..
T Consensus 139 t~gi~p~~~---~t~yGyI~~~~~~~~~~~~V~~f~EKP~~~~a~~~~~~g~~~wNsGiyi~~~~~l~~~l~~~~p~~~~ 215 (274)
T cd02509 139 TFGIKPTRP---ETGYGYIEAGEKLGGGVYRVKRFVEKPDLETAKEYLESGNYLWNSGIFLFRAKTFLEELKKHAPDIYE 215 (274)
T ss_pred EEEeeecCC---CCCeEEEEeCCcCCCCceEEeEEEECcChHHHHHHhhcCCeEEECceeeeeHHHHHHHHHHHCHHHHH
Confidence 887776643 3566777766542 899999998531 3468999999999887766655432210
Q ss_pred -----------C---ccccchhhh---------hc-ccCceeEEEecceEeecCCHHH
Q 014564 225 -----------N---DFGSEIIPA---------SA-NEQFLKAYLFNDYWEDIGTIRS 258 (422)
Q Consensus 225 -----------~---~~~~~~l~~---------l~-~~~~i~~~~~~~~~~di~t~~~ 258 (422)
. .+..+.++. ++ +..++.+++.+..|.|+|++.+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~sidyavme~~~~~~v~~~~~~W~D~G~w~~ 273 (274)
T cd02509 216 ALEKALAAAGTDDFLRLLEEAFAKIPSISIDYAVMEKTKKVAVVPADFGWSDLGSWDA 273 (274)
T ss_pred HHHHHHHhcCCchhhhhhHHHHhhCCCcccchHhheeCCCcEEEecCCCcCcccCccc
Confidence 0 011122222 12 2367888999999999999875
No 53
>cd02540 GT2_GlmU_N_bac N-terminal domain of bacterial GlmU. The N-terminal domain of N-Acetylglucosamine-1-phosphate uridyltransferase (GlmU). GlmU is an essential bacterial enzyme with both an acetyltransferase and an uridyltransferase activity which have been mapped to the C-terminal and N-terminal domains, respectively. This family represents the N-terminal uridyltransferase. GlmU performs the last two steps in the synthesis of UDP-N-acetylglucosamine (UDP-GlcNAc), which is an essential precursor in both the peptidoglycan and the lipopolysaccharide metabolic pathways in Gram-positive and Gram-negative bacteria, respectively.
Probab=99.93 E-value=1.4e-24 Score=197.98 Aligned_cols=217 Identities=24% Similarity=0.338 Sum_probs=163.3
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
|||||||.|+||++ ..||+|+|++|+ |||+|+|+.+.++|+++++|+++++.+++.+++.+ + + +
T Consensus 1 aiIlaaG~g~R~~~---~~pK~l~~v~gk-pli~~~i~~l~~~~i~~i~iv~~~~~~~i~~~~~~-~--------~---~ 64 (229)
T cd02540 1 AVILAAGKGTRMKS---DLPKVLHPLAGK-PMLEHVLDAARALGPDRIVVVVGHGAEQVKKALAN-P--------N---V 64 (229)
T ss_pred CEEEeCCCCccCCC---CCChhcceeCCc-cHHHHHHHHHHhCCCCeEEEEECCCHHHHHHHhCC-C--------C---c
Confidence 69999999999985 689999999999 99999999999999999999999888888877643 1 1 2
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-e-eecChHHHHHHHHHcCCcEEEEEeecCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
.++.... ..|++++++.++.++.. ..++|++++||. + ...++..+++.|.+.++++++.+.+..+
T Consensus 65 ~~~~~~~---------~~g~~~ai~~a~~~~~~----~~~~vli~~~D~p~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~ 131 (229)
T cd02540 65 EFVLQEE---------QLGTGHAVKQALPALKD----FEGDVLVLYGDVPLITPETLQRLLEAHREAGADVTVLTAELED 131 (229)
T ss_pred EEEECCC---------CCCCHHHHHHHHHhhcc----CCCeEEEEeCCccccCHHHHHHHHHHHHhcCCcEEEEEEEcCC
Confidence 3332221 24899999999998853 137899999998 3 3456888999888777777776665543
Q ss_pred CCCcccCCceeeeccceeeeeeecCCCCC----CceeeeeEEEEeHHHHHHHHhhhCCC---CCccccchhhhhccc-Cc
Q 014564 169 SEKPKGKDLKAMAVDTTVLGLSKQEAEEK----PYIASMGVYLFKKEILLNLLRWRFPT---ANDFGSEIIPASANE-QF 240 (422)
Q Consensus 169 ~~k~~~~~~~~~~~d~~v~~~~~k~~~~~----~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~~~~~l~~l~~~-~~ 240 (422)
|..++....+.+++|..+.+++.... .++.++|+|+|+++.+..+++..... .+.+..++++.+++. .+
T Consensus 132 ---p~~~~~~~~~~~~~v~~~~ek~~~~~~~~~~~~~~~giy~~~~~~~~~~l~~~~~~~~~~~~~~~d~~~~~~~~g~~ 208 (229)
T cd02540 132 ---PTGYGRIIRDGNGKVLRIVEEKDATEEEKAIREVNAGIYAFDAEFLFEALPKLTNNNAQGEYYLTDIIALAVADGLK 208 (229)
T ss_pred ---CCCccEEEEcCCCCEEEEEECCCCChHHHhhceEEeEEEEEEHHHHHHHHHHcccccCCCcEEHHHHHHHHHHCCCE
Confidence 54454444556678999988764221 26789999999988776666553221 334556888888864 67
Q ss_pred eeEEEecce--EeecCCHHHH
Q 014564 241 LKAYLFNDY--WEDIGTIRSF 259 (422)
Q Consensus 241 i~~~~~~~~--~~di~t~~~~ 259 (422)
+++++++|+ |+.+++|.++
T Consensus 209 v~~~~~~~~~~~~~~~~~~~~ 229 (229)
T cd02540 209 VAAVLADDEEEVLGVNDRVQL 229 (229)
T ss_pred EEEEEcCCcceEecCCChHhC
Confidence 999999866 7888888764
No 54
>cd04198 eIF-2B_gamma_N The N-terminal domain of gamma subunit of the eIF-2B is a subfamily of glycosyltransferase 2. N-terminal domain of gamma subunit of the eukaryotic translation initiation factor 2B (eIF-2B): eIF-2B is a guanine nucleotide-exchange factor which mediates the exchange of GDP (bound to initiation factor eIF2) for GTP, generating active eIF2.GTP complex. EIF2B is a complex multimeric protein consisting of five subunits named alpha, beta, gamma, delta and epsilon. Subunit gamma shares sequence similarity with epsilon subunit, and with a family of bifunctional nucleotide-binding enzymes such as ADP-glucose pyrophosphorylase, suggesting that epsilon subunit may play roles in nucleotide binding activity. In yeast, eIF2B gamma enhances the activity of eIF2B-epsilon leading to the idea that these subunits form the catalytic subcomplex.
Probab=99.92 E-value=8.8e-25 Score=196.83 Aligned_cols=184 Identities=26% Similarity=0.366 Sum_probs=137.6
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecCh-HHHHHHHHhhccCCCCcccCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (422)
|+|||||||.|+||+|+|...||+|+|++|+ |||+|+|++|.++|+++++|++++.. ++++.++.+.. +... ..
T Consensus 1 ~~aVILAgG~g~R~~plt~~~pK~Llpv~g~-pli~~~l~~l~~~g~~~iivv~~~~~~~~i~~~l~~~~-~~~~--~~- 75 (214)
T cd04198 1 FQAVILAGGGGSRLYPLTDNIPKALLPVANK-PMIWYPLDWLEKAGFEDVIVVVPEEEQAEISTYLRSFP-LNLK--QK- 75 (214)
T ss_pred CEEEEEeCCCCCcCCccccCCCcccCEECCe-eHHHHHHHHHHHCCCCeEEEEECHHHHHHHHHHHHhcc-cccC--cc-
Confidence 6899999999999999999999999999999 99999999999999999999998765 56777775421 1111 00
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
..+.+.... ...|++++|+.+...+. ++|++++||.+++.++.++++.|++.++.+|+++.+..
T Consensus 76 ~~~~~~~~~---------~~~gt~~al~~~~~~i~-------~d~lv~~~D~i~~~~l~~~l~~h~~~~~~~t~~~~~~~ 139 (214)
T cd04198 76 LDEVTIVLD---------EDMGTADSLRHIRKKIK-------KDFLVLSCDLITDLPLIELVDLHRSHDASLTVLLYPPP 139 (214)
T ss_pred eeEEEecCC---------CCcChHHHHHHHHhhcC-------CCEEEEeCccccccCHHHHHHHHhccCCcEEEEEeccC
Confidence 012122111 13699999999988763 78999999999999999999999998899999887754
Q ss_pred CC----------CCcccCCceeeecc-ceeeeeeecC------------------CCCCCceeeeeEEEEeHHHH
Q 014564 168 DS----------EKPKGKDLKAMAVD-TTVLGLSKQE------------------AEEKPYIASMGVYLFKKEIL 213 (422)
Q Consensus 168 ~~----------~k~~~~~~~~~~~d-~~v~~~~~k~------------------~~~~~~~~~~Giy~~~~~~l 213 (422)
.. ..+..+.++.++.+ ++++.+.... ...++++.++|+|+|+++++
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ll~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~l~D~hiyi~~~~v~ 214 (214)
T cd04198 140 VSSEQKGGKGKSKKADERDVIGLDEKTQRLLFITSEEDLDEDLELRKSLLKRHPRVTITTKLLDAHVYIFKRWVL 214 (214)
T ss_pred CcccccCCcccccCCCCCceEEEcCCCCEEEEECCHHHhhhhhhHHHHHHHhCCCEEEEcCcccceEEEEEeeeC
Confidence 21 11122345566654 5777665421 11357899999999998753
No 55
>COG1213 Predicted sugar nucleotidyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.92 E-value=2.6e-24 Score=186.99 Aligned_cols=224 Identities=16% Similarity=0.237 Sum_probs=154.1
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEe-ecChHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILT-QYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~-~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
|+.|+|||||||.|+||+| ..||||+.++|+ ++|+|+|++|.++|++++++|+ ++..+-+..++.+ +++
T Consensus 1 ~~~~kavILAAG~GsRlg~---~~PK~Lvev~gr-~ii~~~i~~L~~~gi~e~vvV~~g~~~~lve~~l~~-~~~----- 70 (239)
T COG1213 1 MHPMKAVILAAGFGSRLGP---DIPKALVEVGGR-EIIYRTIENLAKAGITEFVVVTNGYRADLVEEFLKK-YPF----- 70 (239)
T ss_pred CCceeEEEEecccccccCC---CCCchhhhcCCe-EeHHHHHHHHHHcCCceEEEEeccchHHHHHHHHhc-CCc-----
Confidence 5679999999999999998 899999999999 9999999999999999999999 7777777777754 222
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEe
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
..+++...... ...++.+|..|+++++ +.|++++||++++.. +++...+..... +.+.
T Consensus 71 ----~~~iv~N~~y~-------ktN~~~Sl~~akd~~~-------~~fii~~sD~vye~~---~~e~l~~a~~~~-li~d 128 (239)
T COG1213 71 ----NAKIVINSDYE-------KTNTGYSLLLAKDYMD-------GRFILVMSDHVYEPS---ILERLLEAPGEG-LIVD 128 (239)
T ss_pred ----ceEEEeCCCcc-------cCCceeEEeeehhhhc-------CcEEEEeCCEeecHH---HHHHHHhCcCCc-EEEe
Confidence 14454433221 1256899999999986 679999999999887 344444433332 2222
Q ss_pred ecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEE
Q 014564 165 PMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAY 244 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~ 244 (422)
..+. ..+......+.+.++++.++.++-.+ .+...+|++.|+.+++....+....... ..+.+..+...+.+.
T Consensus 129 ~~~~-~~~~~ea~kv~~e~G~i~~igK~l~e--~~~e~iGi~~l~~~i~~~~~~~~~e~~~----~~~~~~~~~~~~~~~ 201 (239)
T COG1213 129 RRPR-YVGVEEATKVKDEGGRIVEIGKDLTE--YDGEDIGIFILSDSIFEDTYELLVERSE----YDYREVEKEAGLPFT 201 (239)
T ss_pred cccc-ccccCceeEEEecCCEEehhcCCccc--ccceeeeeEEechHHHHHHHHHHhhhhh----HHHHHHHHHhCCceE
Confidence 2211 11112224456678889988877652 4556899999999988754433211111 123333333333333
Q ss_pred Eec-----ceEeecCCHHHHHHHHHhccC
Q 014564 245 LFN-----DYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 245 ~~~-----~~~~di~t~~~~~~a~~~ll~ 268 (422)
..+ .+|.|+++|+++.++.+.+..
T Consensus 202 ~~di~~~g~~w~EVDtpeDl~~ar~~~~~ 230 (239)
T COG1213 202 EVDIHVDGLFWMEVDTPEDLERARKYLVP 230 (239)
T ss_pred EeeccccCceeEecCCHHHHHHHHHHHHH
Confidence 333 569999999999999987754
No 56
>TIGR01479 GMP_PMI mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase. This enzyme is known to be bifunctional, as both mannose-6-phosphate isomerase (EC 5.3.1.8) (PMI) and mannose-1-phosphate guanylyltransferase (EC 2.7.7.22) in Pseudomonas aeruginosa, Xanthomonas campestris, and Gluconacetobacter xylinus. The literature on the enzyme from E. coli attributes mannose-6-phosphate isomerase activity to an adjacent gene, but the present sequence has not been shown to lack the activity. The PMI domain is C-terminal.
Probab=99.91 E-value=6e-23 Score=204.53 Aligned_cols=232 Identities=18% Similarity=0.262 Sum_probs=157.4
Q ss_pred eeEEEEcCCCCccCCccccc-CcCcceeeCC-cceeehhhhhhhhhcCCcEEEEEeecChH-HHHHHHHhhccCCCCccc
Q 014564 9 VAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSA-SLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~-~pK~Llpv~g-k~pli~~~l~~l~~~gi~~i~Iv~~~~~~-~i~~~l~~~~~~~~~~~~ 85 (422)
|.+||||||.|+||+|||.. .||+|+|+.| + |||+|+++.|...++++++|+++.... .+.+.+.. ++..
T Consensus 1 ~~~vILAgG~GtRl~PlS~~~~PK~~l~l~g~~-~ll~~tl~~l~~~~~~~iviv~~~~~~~~~~~~l~~---~~~~--- 73 (468)
T TIGR01479 1 IIPVILAGGSGTRLWPLSRELYPKQFLALVGDL-TMLQQTLKRLAGLPCSSPLVICNEEHRFIVAEQLRE---IGKL--- 73 (468)
T ss_pred CEEEEecCcccccCCccccCCCCCceeEcCCCC-cHHHHHHHHHhcCCCcCcEEecCHHHHHHHHHHHHH---cCCC---
Confidence 57999999999999999997 9999999977 7 999999999999999999999975542 33444432 1100
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeec--ChHHHHHHH---HHcCCcEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRM--DYMDFVQNH---RQSGADIT 160 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~--~l~~ll~~~---~~~~~~~t 160 (422)
...++.... .+||++++..+..++.... ..++.++|++||+++.. .|.++++.+ .++++.+|
T Consensus 74 ---~~~~i~Ep~---------~~gTa~ai~~aa~~~~~~~-~~~~~vlVl~~D~~i~~~~~f~~~l~~~~~~a~~~~lvt 140 (468)
T TIGR01479 74 ---ASNIILEPV---------GRNTAPAIALAALLAARRN-GEDPLLLVLAADHVITDEDAFQAAVKLAMPAAAEGKLVT 140 (468)
T ss_pred ---cceEEeccc---------ccCchHHHHHHHHHHHHHH-CCCcEEEEecCceeecCHHHHHHHHHHHHHHHhcCCEEE
Confidence 012322222 2589999988776663100 01245899999986643 377787765 33445566
Q ss_pred EEEeecCCCCCcccCCceeeec------cceeeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHHhhhCCC---
Q 014564 161 ISCLPMDDSEKPKGKDLKAMAV------DTTVLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLLRWRFPT--- 223 (422)
Q Consensus 161 l~~~~~~~~~k~~~~~~~~~~~------d~~v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll~~~~~~--- 223 (422)
+...+..+ +++|++...+. .++|..|.|||.. ...+++|+|+|+|+++.|...+++..+.
T Consensus 141 lgi~p~~p---~t~YGyI~~~~~~~~~~~~~V~~f~EKP~~~~a~~~l~~g~~~wNsGif~~~~~~ll~~l~~~~p~~~~ 217 (468)
T TIGR01479 141 FGIVPTHP---ETGYGYIRRGEPLAGEDVYQVQRFVEKPDLATAQAYLESGDYYWNSGMFLFRASRYLAELKKHAPDIYE 217 (468)
T ss_pred EEecCCCC---CCCceEEEeCCccCCCCceEEeEEEECCChHHHHHHHhcCCeEEEeeEEEEEHHHHHHHHHHHCHHHHH
Confidence 66655443 46777776652 2579999999853 1247899999999977665444432210
Q ss_pred -----------C---Cccccchhh---------hhcc-cCceeEEEecceEeecCCHHHHHHHH
Q 014564 224 -----------A---NDFGSEIIP---------ASAN-EQFLKAYLFNDYWEDIGTIRSFFEAN 263 (422)
Q Consensus 224 -----------~---~~~~~~~l~---------~l~~-~~~i~~~~~~~~~~di~t~~~~~~a~ 263 (422)
. ..+..++++ .+++ ..++++++.+..|.|+|+|+++.+..
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iSiDyavmEk~~~v~vv~~~~~W~DvGsw~~l~~~~ 281 (468)
T TIGR01479 218 ACEAAVEASEPDLDFIRLDKEAFEQCPSESIDYAVMEKTADAVVVPMDAGWSDVGSWSALWEIS 281 (468)
T ss_pred HHHHHHHhccCCcccceeCHHHHhhCcCCCeeeeeeEcCCcEEEEeCCCCccccCCHHHHHHhh
Confidence 0 111123344 2233 35789999999999999999999874
No 57
>PRK05450 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.90 E-value=3.4e-22 Score=184.09 Aligned_cols=227 Identities=18% Similarity=0.206 Sum_probs=153.1
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
|++.+||||+|.|+||. +|+|+|++|+ |||+|+++.|.++++++++|+++ .+.+.+++.+ + +
T Consensus 1 m~~~~iIlA~g~S~R~~------~K~Ll~i~Gk-pll~~~l~~l~~~~i~~ivvv~~--~~~i~~~~~~-~--~------ 62 (245)
T PRK05450 1 MKFLIIIPARYASTRLP------GKPLADIGGK-PMIVRVYERASKAGADRVVVATD--DERIADAVEA-F--G------ 62 (245)
T ss_pred CceEEEEecCCCCCCCC------CCcccccCCc-CHHHHHHHHHHhcCCCeEEEECC--cHHHHHHHHH-c--C------
Confidence 35789999999999993 6999999999 99999999999999999999885 3566666643 1 1
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeec-ChHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~ll~~~~~~~~~~tl~~~ 164 (422)
+.++...+. .+.|++.... +...+.. ...+.+|+++||+ +++. .+.++++.|..++.++++++.
T Consensus 63 ---~~v~~~~~~-------~~~gt~~~~~-~~~~~~~---~~~~~vlv~~~D~Pli~~~~l~~li~~~~~~~~~~~~~~~ 128 (245)
T PRK05450 63 ---GEVVMTSPD-------HPSGTDRIAE-AAAKLGL---ADDDIVVNVQGDEPLIPPEIIDQVAEPLANPEADMATLAV 128 (245)
T ss_pred ---CEEEECCCc-------CCCchHHHHH-HHHhcCC---CCCCEEEEecCCCCCCCHHHHHHHHHHHhcCCCCeEeeee
Confidence 122221111 1236655443 3333321 0136799999999 5544 478899988766666666665
Q ss_pred ecCC---CCCcccCCceeeeccceeeeeeecCCCC----------CCceeeeeEEEEeHHHHHHHHhhhCCCCCccc-cc
Q 014564 165 PMDD---SEKPKGKDLKAMAVDTTVLGLSKQEAEE----------KPYIASMGVYLFKKEILLNLLRWRFPTANDFG-SE 230 (422)
Q Consensus 165 ~~~~---~~k~~~~~~~~~~~d~~v~~~~~k~~~~----------~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~-~~ 230 (422)
+..+ ...|..++ ..++.+++|++|.+++... .+.+.++|+|+|++++++.+.+.......... .+
T Consensus 129 ~~~~~~~~~~~~~~~-v~~d~~g~v~~~~e~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~l~~~~~~~~~~~~~~~~~~ 207 (245)
T PRK05450 129 PIHDAEEAFNPNVVK-VVLDADGRALYFSRAPIPYGRDAFADSAPTPVYRHIGIYAYRRGFLRRFVSLPPSPLEKIESLE 207 (245)
T ss_pred ecCCHHHhcCcCCCE-EEeCCCCcEEEecCCCCCCCCCccccccCccccEEEEEEecCHHHHHHHHhCCCCccccchhHH
Confidence 5522 12233333 2367778999999887321 24899999999999999866542111111111 11
Q ss_pred hhhhhcccCceeEEEecc-eEeecCCHHHHHHHHHhc
Q 014564 231 IIPASANEQFLKAYLFND-YWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 231 ~l~~l~~~~~i~~~~~~~-~~~di~t~~~~~~a~~~l 266 (422)
+++.+-++.+++++..++ +|.|+|+|++|.++++.+
T Consensus 208 ~~~~~~~g~~v~~~~~~~~~w~~i~~~~dl~~a~~~~ 244 (245)
T PRK05450 208 QLRALENGYRIHVVVVEEAPSIGVDTPEDLERVRALL 244 (245)
T ss_pred HHHHHHCCCceEEEEeCCCCCCCcCCHHHHHHHHHHh
Confidence 234334567899999996 899999999999998754
No 58
>cd02517 CMP-KDO-Synthetase CMP-KDO synthetase catalyzes the activation of KDO which is an essential component of the lipopolysaccharide. CMP-KDO Synthetase: 3-Deoxy-D-manno-octulosonate cytidylyltransferase (CMP-KDO synthetase) catalyzes the conversion of CTP and 3-deoxy-D-manno-octulosonate into CMP-3-deoxy-D-manno-octulosonate (CMP-KDO) and pyrophosphate. KDO is an essential component of the lipopolysaccharide found in the outer surface of gram-negative eubacteria. It is also a constituent of the capsular polysaccharides of some gram-negative eubacteria. Its presence in the cell wall polysaccharides of green algae and plant were also discovered. However, they have not been found in yeast and animals. The absence of the enzyme in mammalian cells makes it an attractive target molecule for drug design.
Probab=99.89 E-value=1e-21 Score=180.30 Aligned_cols=221 Identities=19% Similarity=0.260 Sum_probs=150.9
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecChHHHHHHHHhhccCCCCcccCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
+.+||||+|.|+||. ||+|+|++|+ |||+|+++.|.++ |+++|+|++++ +.+.+++.+ + +
T Consensus 2 ~~~iIlA~g~s~R~~------~K~l~~i~gk-pll~~~l~~l~~~~~i~~ivvv~~~--~~i~~~~~~-~--~------- 62 (239)
T cd02517 2 VIVVIPARYASSRLP------GKPLADIAGK-PMIQHVYERAKKAKGLDEVVVATDD--ERIADAVES-F--G------- 62 (239)
T ss_pred EEEEEecCCCCCCCC------CCCCcccCCc-CHHHHHHHHHHhCCCCCEEEEECCc--HHHHHHHHH-c--C-------
Confidence 679999999999994 7999999999 9999999999999 99999998863 567776643 1 1
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-ee-ecChHHHHHHHHHc-CCcEEEEEe
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQS-GADITISCL 164 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~ll~~~~~~-~~~~tl~~~ 164 (422)
+.++...+. ...|+++ +..+...+.. ..+.||+++||. ++ ...+..+++.|... +.++++++.
T Consensus 63 --~~~~~~~~~-------~~~gt~~-~~~~~~~~~~----~~d~vlv~~gD~Pli~~~~l~~l~~~~~~~~~~~~~~~~~ 128 (239)
T cd02517 63 --GKVVMTSPD-------HPSGTDR-IAEVAEKLDA----DDDIVVNVQGDEPLIPPEMIDQVVAALKDDPGVDMATLAT 128 (239)
T ss_pred --CEEEEcCcc-------cCchhHH-HHHHHHhcCC----CCCEEEEecCCCCCCCHHHHHHHHHHHHhCCCCCEEEEEE
Confidence 222221111 0236764 5555555541 136799999998 44 44588999888765 677887777
Q ss_pred ecCCCCCcccCCc--eeeeccceeeeeeecCCC-------CCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhh--
Q 014564 165 PMDDSEKPKGKDL--KAMAVDTTVLGLSKQEAE-------EKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP-- 233 (422)
Q Consensus 165 ~~~~~~k~~~~~~--~~~~~d~~v~~~~~k~~~-------~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~-- 233 (422)
+..+.+....++. ..++.+++|+.|.+++.. ....+.++|+|+|++++++.+.+.. . ......+.+.
T Consensus 129 ~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~Giy~~~~~~~~~~~~~~-~-~~~~~~~~~~~~ 206 (239)
T cd02517 129 PISDEEELFNPNVVKVVLDKDGYALYFSRSPIPYPRDSSEDFPYYKHIGIYAYRRDFLLRFAALP-P-SPLEQIESLEQL 206 (239)
T ss_pred EcCCHHHccCCCCCEEEECCCCCEEEecCCCCCCCCCCCCCCceeEEEEEEEECHHHHHHHHhCC-C-chhhhhhhHHHH
Confidence 7654220002222 344556889888765422 1357899999999999998664421 1 1111112222
Q ss_pred hhc-ccCceeEEEecceEeecCCHHHHHHHHH
Q 014564 234 ASA-NEQFLKAYLFNDYWEDIGTIRSFFEANL 264 (422)
Q Consensus 234 ~l~-~~~~i~~~~~~~~~~di~t~~~~~~a~~ 264 (422)
.++ ++.+++++..++.|.|+|+|++|.++++
T Consensus 207 ~~~~~g~~v~~~~~~~~w~~i~t~~dl~~a~~ 238 (239)
T cd02517 207 RALENGYKIKVVETDHESIGVDTPEDLERVEA 238 (239)
T ss_pred HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHh
Confidence 334 4566999999899999999999999874
No 59
>PRK13368 3-deoxy-manno-octulosonate cytidylyltransferase; Provisional
Probab=99.87 E-value=7.8e-21 Score=174.26 Aligned_cols=221 Identities=18% Similarity=0.286 Sum_probs=148.5
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
++.|||||+|.|+||. +|+|+|++|+ |||+|+++.+.++ ++++++|++++ +++.+++.+ + +
T Consensus 2 ~~~aiIlA~g~s~R~~------~K~l~~i~Gk-Pli~~~i~~l~~~~~~~~ivv~t~~--~~i~~~~~~-~--~------ 63 (238)
T PRK13368 2 KVVVVIPARYGSSRLP------GKPLLDILGK-PMIQHVYERAAQAAGVEEVYVATDD--QRIEDAVEA-F--G------ 63 (238)
T ss_pred cEEEEEecCCCCCCCC------CCccCccCCc-CHHHHHHHHHHhcCCCCeEEEECCh--HHHHHHHHH-c--C------
Confidence 5789999999999993 5999999999 9999999999999 89999998853 567777653 2 1
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCC-cEEEEE
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGA-DITISC 163 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~-~~tl~~ 163 (422)
++++...+.. ..|++ .+..+...++ .+.|+++.||. +....+.++++.+...+. .+++++
T Consensus 64 ---~~v~~~~~~~-------~~g~~-~~~~a~~~~~------~d~~lv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~~~ 126 (238)
T PRK13368 64 ---GKVVMTSDDH-------LSGTD-RLAEVMLKIE------ADIYINVQGDEPMIRPRDIDTLIQPMLDDPSINVATLC 126 (238)
T ss_pred ---CeEEecCccC-------CCccH-HHHHHHHhCC------CCEEEEEcCCcCcCCHHHHHHHHHHHHHCCCccceeEE
Confidence 1122111111 13565 4555655553 37899999997 445668899998866543 455555
Q ss_pred eecCCCCC---cccCCceeeeccceeeeeeecCCC------CCCceeeeeEEEEeHHHHHHHHhhhCCCC-Ccccc-chh
Q 014564 164 LPMDDSEK---PKGKDLKAMAVDTTVLGLSKQEAE------EKPYIASMGVYLFKKEILLNLLRWRFPTA-NDFGS-EII 232 (422)
Q Consensus 164 ~~~~~~~k---~~~~~~~~~~~d~~v~~~~~k~~~------~~~~~~~~Giy~~~~~~l~~ll~~~~~~~-~~~~~-~~l 232 (422)
.+.+...+ |..++ ..++.+++++.+.+++.. ...++.++|+|+|++++|..+ +...... +.+.. +++
T Consensus 127 ~~~~~~~~~~~p~~~~-~~~~~~g~v~~~~~~~~~~~~~~~~~~~~~n~giy~~~~~~l~~~-~~~~~~~~~~~~~~~~~ 204 (238)
T PRK13368 127 APISTEEEFESPNVVK-VVVDKNGDALYFSRSPIPSRRDGESARYLKHVGIYAFRRDVLQQF-SQLPETPLEQIESLEQL 204 (238)
T ss_pred EEcCCHHHhcCcCCCE-EEECCCCCEEEeeCCCCCCCCCCCCCceeEEEEEEEeCHHHHHHH-HcCCCChhhhhhhHHHH
Confidence 54443221 33222 234456788888865321 114588999999999999753 2211111 11222 455
Q ss_pred hhhcccCceeEEEecceEeecCCHHHHHHHHHh
Q 014564 233 PASANEQFLKAYLFNDYWEDIGTIRSFFEANLA 265 (422)
Q Consensus 233 ~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ 265 (422)
..+..+.+++++..+++|.||++|+||..++..
T Consensus 205 ~~~~~g~~v~~~~~~~~~~DI~t~~Dl~~a~~~ 237 (238)
T PRK13368 205 RALEHGEKIRMVEVAATSIGVDTPEDLERVRAI 237 (238)
T ss_pred HHHHCCCceEEEEeCCCCCCCCCHHHHHHHHHh
Confidence 233356779999988999999999999998763
No 60
>COG4750 LicC CTP:phosphocholine cytidylyltransferase involved in choline phosphorylation for cell surface LPS epitopes [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=3e-20 Score=154.68 Aligned_cols=218 Identities=14% Similarity=0.196 Sum_probs=148.4
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|+|||||||.|+||.|||..+||+|++|.|+ |||+++|+.|.++||.+|+||+++..+++ .|+++.|.
T Consensus 1 ~nAIIlAAG~gsR~~plT~~tpK~LlkV~g~-plIErqI~~L~e~gI~dI~IVvGYlkE~F-eYLkdKy~---------- 68 (231)
T COG4750 1 MNAIILAAGLGSRFVPLTQSTPKSLLKVNGE-PLIERQIEQLREAGIDDITIVVGYLKEQF-EYLKDKYD---------- 68 (231)
T ss_pred CceEEEecccccccccccccCChHHHHhcCc-ccHHHHHHHHHHCCCceEEEEeeehHHHH-HHHHHhcC----------
Confidence 6899999999999999999999999999999 99999999999999999999999998886 67776552
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCC
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
+.++..+... ......++..|++++. +.-++.+|..+..++ +........-.....+.
T Consensus 69 -vtLvyN~kY~-------~yNn~ySlyla~d~l~--------ntYiidsDnyl~kNi------f~~~~~~S~Yfav~~~~ 126 (231)
T COG4750 69 -VTLVYNPKYR-------EYNNIYSLYLARDFLN--------NTYIIDSDNYLTKNI------FLTKESHSKYFAVYRSG 126 (231)
T ss_pred -eEEEeCchHH-------hhhhHHHHHHHHHHhc--------ccEEeccchHhhhhh------hhcCcccceEEEEEecC
Confidence 4455433221 1246789999999885 456788888665442 11111111111111111
Q ss_pred CCCcccCC-ceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHH---HHHHhhhCCCC---CccccchhhhhcccCce
Q 014564 169 SEKPKGKD-LKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEIL---LNLLRWRFPTA---NDFGSEIIPASANEQFL 241 (422)
Q Consensus 169 ~~k~~~~~-~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l---~~ll~~~~~~~---~~~~~~~l~~l~~~~~i 241 (422)
+..+ +...+.+++|+.+.-... ..++.+|+..|+...- ..+++...-+. .-+.+.+...-++...+
T Consensus 127 ----~tnEw~l~~~~~~ki~~v~Igg~---~~~imsG~sff~~~~~~ki~~ll~~~yv~~e~~k~yWd~v~~~ni~~l~m 199 (231)
T COG4750 127 ----KTNEWLLIYNSDGKITRVDIGGL---NGYIMSGISFFDAQFSNKIKKLLKEYYVRLENRKLYWDTVPMENIKELDM 199 (231)
T ss_pred ----CCceeEEEEcCCCcEEEEEecCc---ccceEeeeeeecchhHHHHHHHHHHHHhCchhhhHHHHHHHHHHHHHHhH
Confidence 1112 345567788887765433 4567889999997533 33455443221 23344566666666666
Q ss_pred eEEEec-ceEeecCCHHHHHHHHHhcc
Q 014564 242 KAYLFN-DYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 242 ~~~~~~-~~~~di~t~~~~~~a~~~ll 267 (422)
+.-..+ +.-++++++++|.+....++
T Consensus 200 ~iek~~~n~IyE~DsLdelrk~~~~~l 226 (231)
T COG4750 200 YIEKLNDNDIYEFDSLDELRKFEQKFL 226 (231)
T ss_pred hHHhhcCCceEEeccHHHHHhhhhhhc
Confidence 665554 45789999999998877644
No 61
>PRK15460 cpsB mannose-1-phosphate guanyltransferase; Provisional
Probab=99.83 E-value=1e-19 Score=179.55 Aligned_cols=234 Identities=18% Similarity=0.252 Sum_probs=153.4
Q ss_pred ceeEEEEcCCCCccCCccccc-CcCcceeeCC-cceeehhhhhhhhhcCCcEEEEEeecCh-HHHHHHHHhhccCCCCcc
Q 014564 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~-~pK~Llpv~g-k~pli~~~l~~l~~~gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (422)
+|.+||||||.|+||||+|.. .||+|+|++| + |||+++++++...++.+.+|+++..+ ..+++.+.. +...
T Consensus 5 ~~~~vIlaGG~GtRlwPlS~~~~PKq~l~l~~~~-sllq~t~~r~~~~~~~~~iivt~~~~~~~v~~ql~~---~~~~-- 78 (478)
T PRK15460 5 KLYPVVMAGGSGSRLWPLSRVLYPKQFLCLKGDL-TMLQTTICRLNGVECESPVVICNEQHRFIVAEQLRQ---LNKL-- 78 (478)
T ss_pred ceEEEEECCCCccccccCCCCCCCcceeECCCCC-CHHHHHHHHHHhCCCCCcEEEeCHHHHHHHHHHHHh---cCCc--
Confidence 489999999999999999998 7999999965 6 99999999999988888888887655 334444432 1100
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC--hHHHHHHHH---HcCCcE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGADI 159 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~ll~~~~---~~~~~~ 159 (422)
. ..++.+... ++|+.|+..|..++.......+.-++|+++|+++... |.+.++... +++.-+
T Consensus 79 -~---~~ii~EP~~---------rnTApaialaa~~~~~~~~~~~~~v~vlPaDH~I~d~~~F~~~i~~A~~~A~~~~lv 145 (478)
T PRK15460 79 -T---ENIILEPAG---------RNTAPAIALAALAAKRHSPESDPLMLVLAADHVIADEDAFRAAVRNAMPYAEAGKLV 145 (478)
T ss_pred -c---ccEEecCCC---------CChHHHHHHHHHHHHHhcCCCCCeEEEeccccccCCHHHHHHHHHHHHHHHhcCCEE
Confidence 0 123322221 3788888877766643210013468899999976543 544444432 235556
Q ss_pred EEEEeecCCCCCcccCCceeeecc---------ceeeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHHhhhCC
Q 014564 160 TISCLPMDDSEKPKGKDLKAMAVD---------TTVLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLLRWRFP 222 (422)
Q Consensus 160 tl~~~~~~~~~k~~~~~~~~~~~d---------~~v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll~~~~~ 222 (422)
|+...+..+ -++|+++..... .+|..|.|||.. ...+++|+|+|+|+.+.+...+++..+
T Consensus 146 t~GI~Pt~P---eTgyGYI~~g~~~~~~~~~~~~~V~~F~EKPd~~tA~~yl~~G~y~WNsGiF~~~a~~~l~~~~~~~P 222 (478)
T PRK15460 146 TFGIVPDLP---ETGYGYIRRGEVSAGEQDTVAFEVAQFVEKPNLETAQAYVASGEYYWNSGMFLFRAGRYLEELKKYRP 222 (478)
T ss_pred EEecCCCCC---CCCCCeEEeCCccccccccCceEeeEEEeCCCHHHHHHHHHcCCEEEecceeheeHHHHHHHHHHHCH
Confidence 776666554 356777655421 268999999853 345899999999998866554443322
Q ss_pred C--------------CCcc---ccchhhhh---------c-ccCceeEEEecceEeecCCHHHHHHHH
Q 014564 223 T--------------ANDF---GSEIIPAS---------A-NEQFLKAYLFNDYWEDIGTIRSFFEAN 263 (422)
Q Consensus 223 ~--------------~~~~---~~~~l~~l---------~-~~~~i~~~~~~~~~~di~t~~~~~~a~ 263 (422)
. ...+ ..+.++.+ + +..++.+.+.+.-|.|+|++.++.+..
T Consensus 223 ~i~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iSiDyavmEk~~~v~vvp~~f~WsDvGsW~sl~~~~ 290 (478)
T PRK15460 223 DILDACEKAMSAVDPDLDFIRVDEEAFLACPEESVDYAVMERTADAVVVPMDAGWSDVGSWSSLWEIS 290 (478)
T ss_pred HHHHHHHHHHHhccCcccceeeCHHHHhhCcCcchhhhhhcccCceEEEecCCCccccCCHHHHHHhh
Confidence 1 0000 01122211 1 135688888888899999999998864
No 62
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=99.80 E-value=3.3e-18 Score=155.18 Aligned_cols=234 Identities=20% Similarity=0.294 Sum_probs=155.1
Q ss_pred ceeEEEEcCCCCccCCccccc-CcCcceeeCC-cceeehhhhhhhhh-cCCcEEEEEeecChH-HHHHHHHhhccCCCCc
Q 014564 8 TVAAVILGGGAGTRLYPLTKQ-RAKPAVPIGG-AYRLIDVPMSNCIN-SGINKVYILTQYNSA-SLNRHLARAYNYGSGV 83 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~-~pK~Llpv~g-k~pli~~~l~~l~~-~gi~~i~Iv~~~~~~-~i~~~l~~~~~~~~~~ 83 (422)
+|..||||||.|+|||||+.. .||+|+++.+ + +|++.+++++.. .+.+++++||+.++. .+++.+.+. ...
T Consensus 1 ~~~pvIlaGG~GsRLWPLSR~~~PKQFl~L~~~~-Sllq~T~~R~~~l~~~~~~~vVtne~~~f~v~eql~e~---~~~- 75 (333)
T COG0836 1 MMIPVILAGGSGSRLWPLSRKDYPKQFLKLFGDL-SLLQQTVKRLAFLGDIEEPLVVTNEKYRFIVKEQLPEI---DIE- 75 (333)
T ss_pred CceeEEEeCCCccccCCcCcccCCccceeeCCCC-cHHHHHHHHHhhcCCccCeEEEeCHHHHHHHHHHHhhh---hhc-
Confidence 378999999999999999876 9999999965 6 999999999999 578999999987653 344444321 000
Q ss_pred ccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC--hHHHHHHHH---HcCCc
Q 014564 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD--YMDFVQNHR---QSGAD 158 (422)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~--l~~ll~~~~---~~~~~ 158 (422)
... . -++.+.. +.|+.|+..+.-.+... ..+.-++|+++|+++... |.+.++... +++.-
T Consensus 76 ~~~-~--illEP~g----------RnTApAIA~aa~~~~~~--~~d~~~lVlpsDH~I~d~~af~~av~~A~~~A~~g~l 140 (333)
T COG0836 76 NAA-G--IILEPEG----------RNTAPAIALAALSATAE--GGDALVLVLPSDHVIADEEAFLNAVKKAEKAAEEGGI 140 (333)
T ss_pred ccc-c--eEeccCC----------CCcHHHHHHHHHHHHHh--CCCcEEEEecCcceeccHHHHHHHHHHHHHHHHcCCE
Confidence 000 1 1333222 26888888877666532 113458999999977554 555554432 34455
Q ss_pred EEEEEeecCCCCCcccCCceeeec-----c-ceeeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHHhhhCCC-
Q 014564 159 ITISCLPMDDSEKPKGKDLKAMAV-----D-TTVLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLLRWRFPT- 223 (422)
Q Consensus 159 ~tl~~~~~~~~~k~~~~~~~~~~~-----d-~~v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll~~~~~~- 223 (422)
+|+...|..+ -++|+++.... + .+|..|.|||.. ...+++|+|+|+|+...+...+++..+.
T Consensus 141 VTfGI~Pt~P---eTGYGYIe~G~~~~~~~~~~V~~FvEKPd~etA~~yv~sG~y~WNSGmF~Fra~~~l~e~~~~~P~i 217 (333)
T COG0836 141 VTFGIPPTRP---ETGYGYIETGESIAENGVYKVDRFVEKPDLETAKKYVESGEYLWNSGMFLFRASVFLEELKKHQPDI 217 (333)
T ss_pred EEEecCCCCC---ccCcceeecCcccccCCceEeeeeeeCCCHHHHHHHHHcCceEeeccceEEEHHHHHHHHHhhCcHH
Confidence 6777666554 35677665532 2 368899999852 3458999999999988665544433221
Q ss_pred ----------C--Cccc---cchh---hhh------c-ccCceeEEEecceEeecCCHHHHHHHHH
Q 014564 224 ----------A--NDFG---SEII---PAS------A-NEQFLKAYLFNDYWEDIGTIRSFFEANL 264 (422)
Q Consensus 224 ----------~--~~~~---~~~l---~~l------~-~~~~i~~~~~~~~~~di~t~~~~~~a~~ 264 (422)
. ..+. .+.+ +.. + +..++..++.+-.|-|+|++..+++...
T Consensus 218 ~~~~~~~~~~~~d~~~~~l~~e~f~~~p~iSIDYAiMEkt~~~aVVp~~f~WsDlGsW~Al~~~~~ 283 (333)
T COG0836 218 YCAAEKAFEAAVDENSVRLDNEAYEEIPAISIDYAIMEKTSKAAVVPADFGWSDLGSWHALWEVLD 283 (333)
T ss_pred HHHHHHHHhcccccchhcccHHHHhhCcccchhHHHHhhhcceEEEecCCCcccccCHHHHHHHhh
Confidence 0 0000 1111 111 1 2478888999989999999999988744
No 63
>PLN02917 CMP-KDO synthetase
Probab=99.76 E-value=7.8e-17 Score=150.93 Aligned_cols=228 Identities=14% Similarity=0.155 Sum_probs=147.8
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
.+++.+||||+|.++||. +|+|+|++|+ |||+|+++.+.+++..+.+ ++..+.+++.+++.+. +
T Consensus 45 ~~~i~aIIpA~G~SsR~~------~K~L~~i~Gk-PLL~~vi~~a~~~~~~~~V-VV~~~~e~I~~~~~~~---~----- 108 (293)
T PLN02917 45 RSRVVGIIPARFASSRFE------GKPLVHILGK-PMIQRTWERAKLATTLDHI-VVATDDERIAECCRGF---G----- 108 (293)
T ss_pred CCcEEEEEecCCCCCCCC------CCCeeeECCE-EHHHHHHHHHHcCCCCCEE-EEECChHHHHHHHHHc---C-----
Confidence 356789999999999993 5999999999 9999999999987654443 3345677787776431 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEE--
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI-- 161 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl-- 161 (422)
++++...+.. ..|++++ ..+.+.+.. ..+.+++++||. +...+ +..+++.+.+. .++.+
T Consensus 109 ----v~vi~~~~~~-------~~GT~~~-~~a~~~l~~----~~d~Vlil~gD~PlI~~~tI~~li~~~~~~-~~~iv~t 171 (293)
T PLN02917 109 ----ADVIMTSESC-------RNGTERC-NEALKKLEK----KYDIVVNIQGDEPLIEPEIIDGVVKALQAA-PDAVFST 171 (293)
T ss_pred ----CEEEeCCccc-------CCchHHH-HHHHHhccC----CCCEEEEecCCcCCCCHHHHHHHHHHHHhc-CCceEEE
Confidence 2222111111 1377666 466666642 147899999999 55544 78888877543 33323
Q ss_pred EEeecCCCCCcccCCcee--eeccceeeeeeec------CC---CCCCceeeeeEEEEeHHHHHHHHhhhCCC---CCcc
Q 014564 162 SCLPMDDSEKPKGKDLKA--MAVDTTVLGLSKQ------EA---EEKPYIASMGVYLFKKEILLNLLRWRFPT---ANDF 227 (422)
Q Consensus 162 ~~~~~~~~~k~~~~~~~~--~~~d~~v~~~~~k------~~---~~~~~~~~~Giy~~~~~~l~~ll~~~~~~---~~~~ 227 (422)
++.+. ..+.|.+++... .+.+++++.|..+ .. .....+.++|+|.|+.+.|. .+.....+ .+.+
T Consensus 172 ~~~~~-~~~~~~~ygrv~vv~~~~g~alyfsr~~Ipe~kd~~~~~~~i~~~n~Giy~f~~~~L~-~l~~l~~~n~e~e~y 249 (293)
T PLN02917 172 AVTSL-KPEDASDPNRVKCVVDNQGYAIYFSRGLIPYNKSGKVNPQFPYLLHLGIQSYDAKFLK-IYPELPPTPLQLEED 249 (293)
T ss_pred Eeeec-CHHHhcCCCceEEEECCCCeEEEeecCcCCcCCCcccccccceEEEEEEEEeCHHHHH-HHHcCCCCcccchhc
Confidence 22222 223477777654 4556776655432 21 11236889999999999887 44433221 2333
Q ss_pred ccchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhccCC
Q 014564 228 GSEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAH 269 (422)
Q Consensus 228 ~~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~ 269 (422)
.+++. .+-++.++..++.+....-+||++||..+...+.++
T Consensus 250 Ltdl~-~le~G~~i~~~~~~~~~~GVnt~~dL~~ae~~~~~~ 290 (293)
T PLN02917 250 LEQLK-VLENGYKMKVIKVDHEAHGVDTPEDVEKIEALMRER 290 (293)
T ss_pred cHHHH-HHhCCCceEEEEeCCCCCCCCCHHHHHHHHHHHHHc
Confidence 34443 333467888888765667899999999999877543
No 64
>TIGR00466 kdsB 3-deoxy-D-manno-octulosonate cytidylyltransferase.
Probab=99.66 E-value=7.4e-15 Score=134.06 Aligned_cols=217 Identities=16% Similarity=0.229 Sum_probs=139.9
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
+||+|+|.|+|| .+|+|++++|+ |||.|+++.+.++++++|+|++. .+.+.+++.+ + + +
T Consensus 2 ~iIpA~g~s~R~------~~K~L~~l~Gk-Pli~~~le~~~~~~~d~VvVvt~--~~~i~~~~~~-~--g---------~ 60 (238)
T TIGR00466 2 VIIPARLASSRL------PGKPLEDIFGK-PMIVHVAENANESGADRCIVATD--DESVAQTCQK-F--G---------I 60 (238)
T ss_pred EEEecCCCCCCC------CCCeecccCCc-CHHHHHHHHHHhCCCCeEEEEeC--HHHHHHHHHH-c--C---------C
Confidence 799999999999 37999999999 99999999999889999999885 3456555543 1 1 1
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEeecCC
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPMDD 168 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~~~~~ 168 (422)
+++...+.. ..|+. .+..+...+.. ...+.++++.||. +...+ +.++++.+.+...+++.+..+..+
T Consensus 61 ~~v~~~~~~-------~~Gt~-r~~~~~~~l~~---~~~d~Vli~~gD~Pli~~~~I~~li~~~~~~~~~~a~~~~~~~d 129 (238)
T TIGR00466 61 EVCMTSKHH-------NSGTE-RLAEVVEKLAL---KDDERIVNLQGDEPFIPKEIIRQVADNLATKNVPMAALAVKIHD 129 (238)
T ss_pred EEEEeCCCC-------CChhH-HHHHHHHHhCC---CCCCEEEEEcCCcCcCCHHHHHHHHHHHhcCCCCEEEEeeecCC
Confidence 122111110 11433 33334333321 0136789999999 66555 788888876555677677776654
Q ss_pred CCCcccC-Cceee-eccceeeeeeecCC----C--------C-CCceeeeeEEEEeHHHHHHHHhhhCCCCCcc-ccchh
Q 014564 169 SEKPKGK-DLKAM-AVDTTVLGLSKQEA----E--------E-KPYIASMGVYLFKKEILLNLLRWRFPTANDF-GSEII 232 (422)
Q Consensus 169 ~~k~~~~-~~~~~-~~d~~v~~~~~k~~----~--------~-~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~-~~~~l 232 (422)
.+..... .+..+ +.+++.+.|...+. . . ..++...|+|.|++++|..+........+.. .-+.|
T Consensus 130 ~~~~~~p~~vk~v~~~~g~alyfsr~~ip~~R~~~~~~~tpq~~~~~~h~Giy~~~~~~L~~~~~~~~~~le~~e~leql 209 (238)
T TIGR00466 130 AEEAFNPNAVKVVLDSQGYALYFSRSLIPFDRDFFAKRQTPVGDNLLRHIGIYGYRAGFIEEYVAWKPCVLEEIEKLEQL 209 (238)
T ss_pred HHHccCCCceEEEeCCCCeEEEecCCCCCCCCCcccccccccccceeEEEEEEeCCHHHHHHHHhCCCCcccccchhHHH
Confidence 2211111 12333 55677766655421 0 0 0256789999999999987665422111111 12578
Q ss_pred hhhcccCceeEEEecce-EeecCCHHHH
Q 014564 233 PASANEQFLKAYLFNDY-WEDIGTIRSF 259 (422)
Q Consensus 233 ~~l~~~~~i~~~~~~~~-~~di~t~~~~ 259 (422)
+.+-.+.+|++...+.. -..+|||+|+
T Consensus 210 r~le~g~~i~~~~~~~~~~~~vdt~~d~ 237 (238)
T TIGR00466 210 RVLYYGEKIHVKIAQEVPSVGVDTQEDL 237 (238)
T ss_pred hhhhcCCceEEEEeCCCCCCCCCChHHc
Confidence 88888999999888765 4589999987
No 65
>PRK00155 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Reviewed
Probab=99.65 E-value=5.5e-15 Score=134.43 Aligned_cols=219 Identities=17% Similarity=0.182 Sum_probs=139.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecCh-HHHHHHHHhhccCCCCc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS-ASLNRHLARAYNYGSGV 83 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~ 83 (422)
|+++.+||||||.|+||+ ...||+|+|++|+ |||+|+++.+..++ +++++|++++.. +.+.+.+... .
T Consensus 1 ~~~~~~iILAaG~s~R~g---~~~~K~l~~~~g~-pli~~~l~~l~~~~~~~~ivvv~~~~~~~~~~~~~~~~-----~- 70 (227)
T PRK00155 1 MMMVYAIIPAAGKGSRMG---ADRPKQYLPLGGK-PILEHTLEAFLAHPRIDEIIVVVPPDDRPDFAELLLAK-----D- 70 (227)
T ss_pred CCceEEEEEcCccccccC---CCCCceeeEECCE-EHHHHHHHHHHcCCCCCEEEEEeChHHHHHHHHHhhcc-----C-
Confidence 456889999999999994 4589999999999 99999999999874 899999998665 3333322110 0
Q ss_pred ccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEE
Q 014564 84 TFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
..+.++.. . .+.+++++.+...+.+ .+.+|++.||. ++..+ +..+++.+.+.+ ..+
T Consensus 71 ----~~~~~~~~--~---------~~~~~sv~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~ 128 (227)
T PRK00155 71 ----PKVTVVAG--G---------AERQDSVLNGLQALPD-----DDWVLVHDAARPFLTPDDIDRLIEAAEETG--AAI 128 (227)
T ss_pred ----CceEEeCC--c---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhCC--CEE
Confidence 01223221 1 1468899999887743 37899999998 55554 788888876543 323
Q ss_pred EEeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhc-ccCc
Q 014564 162 SCLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQF 240 (422)
Q Consensus 162 ~~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~-~~~~ 240 (422)
...+..+ + +..++.++.+..+.++. .....-+.|.|+.+.|..+++..... ..+..+....+. .+.+
T Consensus 129 ~~~~~~~---~----~~~v~~~g~~~~~~~r~----~~~~~~~p~~f~~~~l~~~~~~~~~~-~~~~~d~~~~~~~~~~~ 196 (227)
T PRK00155 129 LAVPVKD---T----IKRSDDGGGIVDTPDRS----GLWAAQTPQGFRIELLREALARALAE-GKTITDDASAVERLGKP 196 (227)
T ss_pred EEEeccc---c----EEEEcCCCceeecCChH----HheeeeCCccchHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCC
Confidence 3333322 1 22233345555443211 11122248999999888777654321 222222222222 2466
Q ss_pred eeEEEecceEeecCCHHHHHHHHHhccC
Q 014564 241 LKAYLFNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 241 i~~~~~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
+..++.+..+.+|+|++||..+...+.+
T Consensus 197 i~~~~~~~~~~~Idt~~Dl~~ae~~~~~ 224 (227)
T PRK00155 197 VRLVEGRYDNIKITTPEDLALAEAILKR 224 (227)
T ss_pred eEEEecCcccccCCCHHHHHHHHHHHHh
Confidence 7777766678899999999999876543
No 66
>TIGR00453 ispD 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase. Members of this protein family are 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, the IspD protein of the deoxyxylulose pathway of IPP biosynthesis. In about twenty percent of bacterial genomes, this protein occurs as IspDF, a bifunctional fusion protein.
Probab=99.65 E-value=5.9e-15 Score=133.31 Aligned_cols=211 Identities=19% Similarity=0.191 Sum_probs=136.9
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh-HHHHHHHHhhccCCCCcccCC
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~~ 87 (422)
.+||||||.|+||+ ...||+|++++|+ |||+|+++.+.++ ++++++|+++++. +.+...+....
T Consensus 1 ~aiIlAaG~s~R~~---~~~~K~l~~l~gk-pll~~~l~~l~~~~~~~~ivVv~~~~~~~~~~~~~~~~~---------- 66 (217)
T TIGR00453 1 SAVIPAAGRGTRFG---SGVPKQYLELGGR-PLLEHTLDAFLAHPAIDEVVVVVSPEDQEFFQKYLVARA---------- 66 (217)
T ss_pred CEEEEcCcccccCC---CCCCccEeEECCe-EHHHHHHHHHhcCCCCCEEEEEEChHHHHHHHHHhhcCC----------
Confidence 37999999999996 2479999999999 9999999999998 8999999998654 34443332100
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEee
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~~ 165 (422)
.+.++.. . .+..++++.+...+.+ .+.+|++.||. ++..+ +..+++.+.+. +++++..+
T Consensus 67 -~~~~~~~--~---------~~~~~sl~~~l~~~~~-----~d~vlv~~~D~P~i~~~~i~~li~~~~~~--~~~~~~~~ 127 (217)
T TIGR00453 67 -VPKIVAG--G---------DTRQDSVRNGLKALKD-----AEWVLVHDAARPFVPKELLDRLLEALRKA--GAAILALP 127 (217)
T ss_pred -cEEEeCC--C---------chHHHHHHHHHHhCCC-----CCEEEEccCccCCCCHHHHHHHHHHHhhC--CcEEEeEe
Confidence 1233321 1 1355788888877621 47899999999 55555 78888877653 33344443
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhc-ccCceeEE
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFLKAY 244 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~-~~~~i~~~ 244 (422)
..+ .+..++.++.+..+.++.. .....+ .|.|+...+..+++...... .+..|....+. .+.++..+
T Consensus 128 ~~~-------~v~~~~~~g~~~~~~~r~~---~~~~~~-p~~f~~~~l~~~~~~~~~~~-~~~~d~~~~~~~~g~~i~~~ 195 (217)
T TIGR00453 128 VAD-------TLKRVEADGFIVETVDREG---LWAAQT-PQAFRTELLKKALARAKEEG-FEITDDASAVEKLGGKVALV 195 (217)
T ss_pred ccc-------eEEEEcCCCceeecCChHH---eEEEeC-CCcccHHHHHHHHHHHHhcC-CCCCcHHHHHHHcCCCeEEE
Confidence 322 2333344455666555321 223334 79999998877765432222 11222222222 25678888
Q ss_pred EecceEeecCCHHHHHHHHHh
Q 014564 245 LFNDYWEDIGTIRSFFEANLA 265 (422)
Q Consensus 245 ~~~~~~~di~t~~~~~~a~~~ 265 (422)
+.+....++++|+||..+...
T Consensus 196 ~~~~~~~~I~~~~Dl~~ae~~ 216 (217)
T TIGR00453 196 EGDALNFKITTPEDLALAEAL 216 (217)
T ss_pred ecCccccccCCHHHHHHHHHh
Confidence 777667899999999888653
No 67
>TIGR00454 conserved hypothetical protein TIGR00454. At this time this gene appears to be present only in Archea
Probab=99.64 E-value=3.4e-15 Score=130.35 Aligned_cols=126 Identities=23% Similarity=0.243 Sum_probs=95.3
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|.+||||||.|+||++ .||+|+|++|+ |||+|+++.+..+++++++++++++.+.++.++.+..
T Consensus 1 m~aIILAgG~gsRmg~----~~K~Ll~i~Gk-plI~~vi~~l~~~~i~~I~Vv~~~~~~~~~~~l~~~~----------- 64 (183)
T TIGR00454 1 MDALIMAGGKGTRLGG----VEKPLIEVCGR-CLIDHVLSPLLKSKVNNIIIATSPHTPKTEEYINSAY----------- 64 (183)
T ss_pred CeEEEECCccCccCCC----CCceEeEECCE-EHHHHHHHHHHhCCCCEEEEEeCCCHHHHHHHHhhcC-----------
Confidence 6899999999999965 79999999999 9999999999999999999999988888888875421
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-e-eecChHHHHHHHHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
..+.. ... .|...++..+...+.. .++||+++||+ + ....+..+++.+...+......+.+.
T Consensus 65 -~~~~~-~~g---------~G~~~~l~~al~~~~~-----~~~~lv~~~D~P~i~~~~i~~li~~~~~~~~~~~~~~~~~ 128 (183)
T TIGR00454 65 -KDYKN-ASG---------KGYIEDLNECIGELYF-----SEPFLVVSSDLINLRSKIIDSIVDYYYCIKAPALAVMIPK 128 (183)
T ss_pred -cEEEe-cCC---------CCHHHHHHHHhhcccC-----CCCEEEEeCCcCcCCHHHHHHHHHHHHhcCCCceEEEecc
Confidence 11221 111 3777788887765432 47999999999 3 34447889888876665554444433
No 68
>cd02516 CDP-ME_synthetase CDP-ME synthetase is involved in mevalonate-independent isoprenoid production. 4-diphosphocytidyl-2-methyl-D-erythritol synthase (CDP-ME), also called 2C-methyl-d-erythritol 4-phosphate cytidylyltransferase catalyzes the third step in the alternative (non-mevalonate) pathway of Isopentenyl diphosphate (IPP) biosynthesis: the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate. This mevalonate independent pathway that utilizes pyruvate and glyceraldehydes 3-phosphate as starting materials for production of IPP occurs in a variety of bacteria, archaea and plant cells, but is absent in mammals. Thus, CDP-ME synthetase is an attractive targets for the structure-based design of selective antibacterial, herbicidal and antimalarial drugs.
Probab=99.62 E-value=1.4e-14 Score=130.85 Aligned_cols=212 Identities=17% Similarity=0.228 Sum_probs=136.9
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
.+||||||.|+||++ ..||+|+|++|+ |||+|+++.+.+++ +++++|++++...+....+.. +....
T Consensus 2 ~~vILAaG~s~R~~~---~~~K~l~~i~Gk-pll~~~i~~l~~~~~~~~ivVv~~~~~~~~~~~~~~-~~~~~------- 69 (218)
T cd02516 2 AAIILAAGSGSRMGA---DIPKQFLELGGK-PVLEHTLEAFLAHPAIDEIVVVVPPDDIDLAKELAK-YGLSK------- 69 (218)
T ss_pred EEEEECCcccccCCC---CCCcceeEECCe-EHHHHHHHHHhcCCCCCEEEEEeChhHHHHHHHHHh-cccCC-------
Confidence 589999999999974 379999999999 99999999999986 999999998766444443311 10110
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEeec
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLPM 166 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~~~ 166 (422)
.+.++.. . .+...+++.+...+... ..+.+|++.||+ ++..+ +..+++.+.+.+ ..+...+.
T Consensus 70 ~~~~~~~--~---------~~~~~si~~al~~~~~~---~~~~vlv~~~D~P~i~~~~i~~li~~~~~~~--~~~~~~~~ 133 (218)
T cd02516 70 VVKIVEG--G---------ATRQDSVLNGLKALPDA---DPDIVLIHDAARPFVSPELIDRLIDALKEYG--AAIPAVPV 133 (218)
T ss_pred CeEEECC--c---------hHHHHHHHHHHHhcccC---CCCEEEEccCcCCCCCHHHHHHHHHHHhhCC--cEEEEEec
Confidence 1333321 1 14578899998887410 147899999998 55554 788888875543 22333333
Q ss_pred CCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcc-cCceeEEE
Q 014564 167 DDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASAN-EQFLKAYL 245 (422)
Q Consensus 167 ~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~-~~~i~~~~ 245 (422)
.+ .+...+.++++.++.+... -....++ ++|+.+.|.+++....+. ..+..|....+.+ +.++..++
T Consensus 134 ~~-------~~~~~~~~g~~~~~~~r~~---~~~~~~P-~~f~~~~~~~~~~~~~~~-~~~~td~~~~~~~~~~~v~~v~ 201 (218)
T cd02516 134 TD-------TIKRVDDDGVVVETLDREK---LWAAQTP-QAFRLDLLLKAHRQASEE-GEEFTDDASLVEAAGGKVALVE 201 (218)
T ss_pred cc-------cEEEecCCCceeecCChHH---hhhhcCC-CcccHHHHHHHHHHHHhc-CCCcCcHHHHHHHcCCCeEEEe
Confidence 22 1233455677777665422 2334556 899999998887654332 2222333332222 35677777
Q ss_pred ecceEeecCCHHHHHH
Q 014564 246 FNDYWEDIGTIRSFFE 261 (422)
Q Consensus 246 ~~~~~~di~t~~~~~~ 261 (422)
.+..-.||+||+||..
T Consensus 202 ~~~~~~~i~t~~dl~~ 217 (218)
T cd02516 202 GSEDNIKITTPEDLAL 217 (218)
T ss_pred cCcccccCCCHHHHhh
Confidence 6666679999999854
No 69
>TIGR03310 matur_ygfJ molybdenum hydroxylase accessory protein, YgfJ family. Members of this protein family are probable accessory proteins for the biosynthesis of enzymes related to xanthine dehydrogenase. Comparative genomics suggests a role in the maturation of selenium-dependent molybdenum hydroxylases, although a tenuous alternative hypothesis is a role for this protein (with a requirement for SelD, the selenium donor protein in the selenocysteine and selenouridine biosynthesis pathways) metabolizing a selenium-containing substrate such as selenate.
Probab=99.61 E-value=1.2e-14 Score=128.17 Aligned_cols=121 Identities=17% Similarity=0.240 Sum_probs=88.2
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++++|++++..+++.+.+... ++ +
T Consensus 2 ~iIla~G~s~R~g-----~~K~ll~~~g~-pll~~~i~~l~~~~~~~iivv~~~~~~~~~~~~~~~--------~~---v 64 (188)
T TIGR03310 2 AIILAAGLSSRMG-----QNKLLLPYKGK-TILEHVVDNALRLFFDEVILVLGHEADELVALLANH--------SN---I 64 (188)
T ss_pred eEEECCCCcccCC-----CCceecccCCe-eHHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHhccC--------CC---e
Confidence 7999999999997 59999999999 999999999999899999999998776554443221 11 3
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeec-ChHHHHHHHHHcCCcEEE
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHRQSGADITI 161 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~-~l~~ll~~~~~~~~~~tl 161 (422)
.++..... ..|+..+++.+..+..+ .+.|++++||+ ++.. .+..+++.+......+++
T Consensus 65 ~~v~~~~~--------~~g~~~si~~~l~~~~~-----~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~ 124 (188)
T TIGR03310 65 TLVHNPQY--------AEGQSSSIKLGLELPVQ-----SDGYLFLLGDQPFVTPDIIQLLLEAFALKNDEIVV 124 (188)
T ss_pred EEEECcCh--------hcCHHHHHHHHhcCCCC-----CCEEEEEeCCcCCCCHHHHHHHHHHHHhCCCcEEE
Confidence 33332211 13788999988862111 47899999999 4444 478888877665554433
No 70
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.60 E-value=3.4e-15 Score=134.64 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=30.4
Q ss_pred cchhhhhcccCceeEEEecceEeecCCHHHHHHHHHhccCCC
Q 014564 229 SEIIPASANEQFLKAYLFNDYWEDIGTIRSFFEANLALTAHP 270 (422)
Q Consensus 229 ~~~l~~l~~~~~i~~~~~~~~~~di~t~~~~~~a~~~ll~~~ 270 (422)
.+.++.+++.+ ++.++|||.|+ ++|++++++++...
T Consensus 31 ~~~~~~~~~~~---~~~~~gyW~Di---~~yl~an~diL~~~ 66 (231)
T TIGR03532 31 PESIKKFGSGH---SGVLFGEWEDI---EPFIEANKDKIKDY 66 (231)
T ss_pred chheEEEecCC---cEEEEEeHHHH---HHHHHHhHhhhcce
Confidence 46777777655 88889999999 99999999999864
No 71
>PF12804 NTP_transf_3: MobA-like NTP transferase domain; PDB: 3FWW_A 2XME_D 2XMH_C 2DPW_A 2WAW_A 2OI5_B 1HV9_B 1FWY_A 2OI6_A 2OI7_B ....
Probab=99.59 E-value=9.7e-15 Score=125.30 Aligned_cols=120 Identities=25% Similarity=0.389 Sum_probs=92.6
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeE
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCV 90 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v 90 (422)
+||||||.|+||+ .||+|+|++|+ |||+|+++.+.++++++|+|++++ +++..++.+. + +
T Consensus 1 ~vILa~G~s~Rmg-----~~K~l~~i~g~-~li~~~l~~l~~~~~~~Ivvv~~~--~~~~~~~~~~-----~-------~ 60 (160)
T PF12804_consen 1 AVILAAGKSSRMG-----GPKALLPIGGK-PLIERVLEALREAGVDDIVVVTGE--EEIYEYLERY-----G-------I 60 (160)
T ss_dssp EEEEESSSCGGGT-----SCGGGSEETTE-EHHHHHHHHHHHHTESEEEEEEST--HHHHHHHTTT-----T-------S
T ss_pred CEEECCcCcccCC-----CCccceeECCc-cHHHHHHHHhhccCCceEEEecCh--HHHHHHHhcc-----C-------c
Confidence 6999999999996 49999999999 999999999999999999999977 4555555321 1 3
Q ss_pred EEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 91 EVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 91 ~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
+++..... ..|...+++.+...+.. .++|++++||+ +.+.+ +..+++.+.+.+.++.+..
T Consensus 61 ~~v~~~~~--------~~G~~~sl~~a~~~~~~-----~~~vlv~~~D~p~~~~~~l~~l~~~~~~~~~~i~~~~ 122 (160)
T PF12804_consen 61 KVVVDPEP--------GQGPLASLLAALSQLPS-----SEPVLVLPCDQPFLSPELLRRLLEALEKSPADIVVPV 122 (160)
T ss_dssp EEEE-STS--------SCSHHHHHHHHHHTSTT-----SSEEEEEETTETTS-HHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEeccc--------cCChHHHHHHHHHhccc-----CCCcEEEeCCccccCHHHHHHHHHHHhccCCcEEEEE
Confidence 34333211 14999999999988732 59999999999 44444 7889998887777765543
No 72
>PRK00317 mobA molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed
Probab=99.58 E-value=7e-14 Score=123.86 Aligned_cols=187 Identities=19% Similarity=0.174 Sum_probs=116.1
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|++|.+||||||.|+||. ..||+|+|++|+ |||+|+++.+. .++++++|+++...+.+ .+ . +
T Consensus 1 ~~~~~~vILA~G~s~Rm~----~~~K~ll~~~g~-~ll~~~i~~l~-~~~~~i~vv~~~~~~~~----~~-~--~----- 62 (193)
T PRK00317 1 MPPITGVILAGGRSRRMG----GVDKGLQELNGK-PLIQHVIERLA-PQVDEIVINANRNLARY----AA-F--G----- 62 (193)
T ss_pred CCCceEEEEcCCCcccCC----CCCCceeEECCE-EHHHHHHHHHh-hhCCEEEEECCCChHHH----Hh-c--C-----
Confidence 567899999999999994 379999999999 99999999998 67999999987543222 11 1 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++..... ...|...+++.+....+ .+.++++.||+ ++..+ +..+++.+.+....+.. .
T Consensus 63 ----~~~v~~~~~-------~~~g~~~~i~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~-~ 124 (193)
T PRK00317 63 ----LPVIPDSLA-------DFPGPLAGILAGLKQAR------TEWVLVVPCDTPFIPPDLVARLAQAAGKDDADVAW-A 124 (193)
T ss_pred ----CcEEeCCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEcCCcCCCCHHHHHHHHHhhhcCCCcEEE-E
Confidence 122221111 01377889988887554 47899999999 65555 67777765443333322 1
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeE
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKA 243 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~ 243 (422)
. ... + . .-=.-+|++..+..+.+...... .=+..++++..+..
T Consensus 125 ~-~~~---~--------------------------~--~Pl~~~~~~~~~~~l~~~l~~g~-----~~~~~~l~~~~~~~ 167 (193)
T PRK00317 125 H-DGG---R--------------------------L--HPTFALYSVALLPDLEAYLAAGE-----RKVMAFYARHGGVA 167 (193)
T ss_pred e-eCC---c--------------------------c--eeEEEEEeHHHHHHHHHHHHcCC-----chHHHHHHHCCcEE
Confidence 1 110 0 0 00112567777765543221111 12334444444444
Q ss_pred EEec---ceEeecCCHHHHHHHHHh
Q 014564 244 YLFN---DYWEDIGTIRSFFEANLA 265 (422)
Q Consensus 244 ~~~~---~~~~di~t~~~~~~a~~~ 265 (422)
+.+. +.+.|+|||+||..+.+.
T Consensus 168 v~~~~~~~~~~dinTped~~~~~~~ 192 (193)
T PRK00317 168 VDFSDPKDAFFNINTPEDLAQLEEL 192 (193)
T ss_pred EeCCCCCCccCcCCCHHHHHHHHhh
Confidence 4432 457899999999877653
No 73
>cd04182 GT_2_like_f GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=99.58 E-value=3e-14 Score=125.31 Aligned_cols=121 Identities=22% Similarity=0.354 Sum_probs=89.4
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
+.+||||||.|+||++ ||+|+|+.|+ |||+|+++.+..+++++++|++++....+..++.. + +
T Consensus 1 ~~~vIlAgG~s~R~g~-----~K~l~~~~g~-~li~~~i~~l~~~~~~~i~vv~~~~~~~~~~~~~~---~--~------ 63 (186)
T cd04182 1 IAAIILAAGRSSRMGG-----NKLLLPLDGK-PLLRHALDAALAAGLSRVIVVLGAEADAVRAALAG---L--P------ 63 (186)
T ss_pred CeEEEECCCCCCCCCC-----CceeCeeCCe-eHHHHHHHHHHhCCCCcEEEECCCcHHHHHHHhcC---C--C------
Confidence 4689999999999975 9999999999 99999999999999999999998776555444321 1 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcE
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~ 159 (422)
+.++..... ..|+..+++.++..+.. ..+.+++++||+ ++..+ +..+++.+....+.+
T Consensus 64 -~~~~~~~~~--------~~G~~~~i~~al~~~~~----~~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 123 (186)
T cd04182 64 -VVVVINPDW--------EEGMSSSLAAGLEALPA----DADAVLILLADQPLVTAETLRALIDAFREDGAGI 123 (186)
T ss_pred -eEEEeCCCh--------hhCHHHHHHHHHHhccc----cCCEEEEEeCCCCCCCHHHHHHHHHHHHhCCCeE
Confidence 223322211 14889999999888752 147899999999 44444 678888776544443
No 74
>PRK13385 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; Provisional
Probab=99.58 E-value=1.2e-13 Score=125.77 Aligned_cols=219 Identities=16% Similarity=0.176 Sum_probs=136.8
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh-HHHHHHHHhhccCCCCccc
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~~ 85 (422)
++.+||||||.|+||+ ...||+|++++|+ |||.|+++.+..+ .+++++|+++... ..+.+++.+ +.+.
T Consensus 2 ~~~~iIlAaG~g~R~g---~~~~K~l~~l~gk-pll~~~i~~~~~~~~~~~ivVv~~~~~~~~~~~~~~~-~~~~----- 71 (230)
T PRK13385 2 NYELIFLAAGQGKRMN---APLNKMWLDLVGE-PIFIHALRPFLADNRCSKIIIVTQAQERKHVQDLMKQ-LNVA----- 71 (230)
T ss_pred ceEEEEECCeeccccC---CCCCcceeEECCe-EHHHHHHHHHHcCCCCCEEEEEeChhhHHHHHHHHHh-cCcC-----
Confidence 4689999999999995 4589999999999 9999999999886 5899999997543 333334432 2110
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
...++++... .+..++++.+...+.+ .+.++++.||. +...+ +..+++.+.+.++.. .+
T Consensus 72 -~~~~~~v~~g-----------~~r~~sv~~gl~~~~~-----~d~vli~~~d~P~i~~~~i~~li~~~~~~~~~~--~~ 132 (230)
T PRK13385 72 -DQRVEVVKGG-----------TERQESVAAGLDRIGN-----EDVILVHDGARPFLTQDIIDRLLEGVAKYGAAI--CA 132 (230)
T ss_pred -CCceEEcCCC-----------chHHHHHHHHHHhccC-----CCeEEEccCCCCCCCHHHHHHHHHHHhhCCcEE--EE
Confidence 0013333211 1345888888877753 35678889999 66666 688888876654332 23
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhh-hhcccCcee
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIP-ASANEQFLK 242 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~-~l~~~~~i~ 242 (422)
.+..+ .+... .++.+.+..++. ..+..-+.|.|+.+.+.+..+.... ...+..+... ....+.++.
T Consensus 133 ~~~~d-------ti~~~-~~~~~~~~i~r~----~~~~~qtpq~f~~~~l~~~~~~~~~-~~~~~td~~~~~~~~g~~v~ 199 (230)
T PRK13385 133 VEVKD-------TVKRV-KDKQVIETVDRN----ELWQGQTPQAFELKILQKAHRLASE-QQFLGTDEASLVERSPHPVK 199 (230)
T ss_pred Eeccc-------eEEEE-cCCeeEeccCHH----HHhhhcCCceeeHHHHHHHHHHHHh-cCCCcCcHHHHHHHcCCCEE
Confidence 32222 11222 233333222211 1222336889998877766553211 1222233222 222467888
Q ss_pred EEEecceEeecCCHHHHHHHHHhccC
Q 014564 243 AYLFNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 243 ~~~~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
.++-+.....|++|+|+..+...+..
T Consensus 200 ~v~~~~~n~kItt~eDl~~a~~~l~~ 225 (230)
T PRK13385 200 LVQGSYYNIKLTTPEDMPLAKAILQG 225 (230)
T ss_pred EEECCcccCcCCCHHHHHHHHHHHhh
Confidence 88887788999999999999876643
No 75
>PRK09382 ispDF bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional
Probab=99.57 E-value=5e-14 Score=135.96 Aligned_cols=208 Identities=15% Similarity=0.174 Sum_probs=131.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
|+++.+||||||.|+||. ...||+|+|++|+ |||+|+++.+.+++ +++++|++++...+..+.+...+ .
T Consensus 3 mm~v~aIILAAG~GsRmg---~~~pKqll~l~Gk-Pll~~tl~~l~~~~~i~~IvVVv~~~~~~~~~~~~~~~------~ 72 (378)
T PRK09382 3 MSDISLVIVAAGRSTRFS---AEVKKQWLRIGGK-PLWLHVLENLSSAPAFKEIVVVIHPDDIAYMKKALPEI------K 72 (378)
T ss_pred CCcceEEEECCCCCccCC---CCCCeeEEEECCe-eHHHHHHHHHhcCCCCCeEEEEeChHHHHHHHHhcccC------C
Confidence 466899999999999994 4589999999999 99999999999987 79999999876544433321110 1
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
.+.++.. . .+..++++.++..++ .+.+++..||. +++.+ +..+++...+ +++++.
T Consensus 73 ----~v~~v~g--G---------~~r~~SV~~gL~~l~------~d~VLVhdadrPfv~~e~I~~li~~~~~--~~a~i~ 129 (378)
T PRK09382 73 ----FVTLVTG--G---------ATRQESVRNALEALD------SEYVLIHDAARPFVPKELIDRLIEALDK--ADCVLP 129 (378)
T ss_pred ----eEEEeCC--C---------chHHHHHHHHHHhcC------CCeEEEeeccccCCCHHHHHHHHHHhhc--CCeEEE
Confidence 1333321 1 146788999988875 37789999998 55555 6777776543 345566
Q ss_pred EeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhc-ccCce
Q 014564 163 CLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASA-NEQFL 241 (422)
Q Consensus 163 ~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~-~~~~i 241 (422)
..++.+ +..+....++ .+.+..+ .+|. .|+...+.... .....+ .|..+.+. .+.++
T Consensus 130 ~~pv~D---tik~~~~tld-R~~l~~~-QTPQ------------~f~~~~l~~a~----~~~~~~-TDd~sl~~~~G~~V 187 (378)
T PRK09382 130 ALPVAD---TLKRANETVD-REGLKLI-QTPQ------------LSRTKTLKAAA----DGRGDF-TDDSSAAEAAGGKV 187 (378)
T ss_pred EEEecc---CcEEeeeEcC-cccEEEE-ECCC------------CCCHHHHHHHH----hCCCCc-ccHHHHHHHcCCcE
Confidence 666655 2211111111 1122222 2221 12222222111 111122 34444333 36788
Q ss_pred eEEEecceEeecCCHHHHHHHHHhccC
Q 014564 242 KAYLFNDYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~~~ll~ 268 (422)
..++.+..|.++++|+||..++..+..
T Consensus 188 ~~v~g~~~n~KITtpeDL~~A~~~l~~ 214 (378)
T PRK09382 188 ALVEGSEDLHKLTYKEDLKMADLLLSP 214 (378)
T ss_pred EEEECCCcccCCCCHHHHHHHHHHhcc
Confidence 899888999999999999999886654
No 76
>COG2266 GTP:adenosylcobinamide-phosphate guanylyltransferase [Coenzyme metabolism]
Probab=99.55 E-value=1.8e-13 Score=113.89 Aligned_cols=110 Identities=19% Similarity=0.296 Sum_probs=86.9
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|.+||+|||+|+||. ..-|||++++|| |||+|+++.+.+ .+++++++++++...++.|+....
T Consensus 1 m~~iiMAGGrGtRmg----~~EKPlleV~Gk-pLI~~v~~al~~-~~d~i~v~isp~tp~t~~~~~~~g----------- 63 (177)
T COG2266 1 MMAIIMAGGRGTRMG----RPEKPLLEVCGK-PLIDRVLEALRK-IVDEIIVAISPHTPKTKEYLESVG----------- 63 (177)
T ss_pred CceEEecCCcccccC----CCcCcchhhCCc-cHHHHHHHHHHh-hcCcEEEEeCCCCHhHHHHHHhcC-----------
Confidence 578999999999995 355999999999 999999999999 789999999999999999886521
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHH
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHR 153 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~ 153 (422)
++++.-... |--.-++.+.+.+. .+||++++|+ +.++. +..+.+.+.
T Consensus 64 -v~vi~tpG~----------GYv~Dl~~al~~l~-------~P~lvvsaDLp~l~~~~i~~vi~~~~ 112 (177)
T COG2266 64 -VKVIETPGE----------GYVEDLRFALESLG-------TPILVVSADLPFLNPSIIDSVIDAAA 112 (177)
T ss_pred -ceEEEcCCC----------ChHHHHHHHHHhcC-------CceEEEecccccCCHHHHHHHHHHHh
Confidence 455542221 66677777777664 6999999999 55544 566666654
No 77
>cd02503 MobA MobA catalyzes the formation of molybdopterin guanine dinucleotide. The prokaryotic enzyme molybdopterin-guanine dinucleotide biosynthesis protein A (MobA). All mononuclear molybdoenzymes bind molybdenum in complex with an organic cofactor termed molybdopterin (MPT). In many bacteria, including Escherichia coli, molybdopterin can be further modified by attachment of a GMP group to the terminal phosphate of molybdopterin to form molybdopterin guanine dinucleotide (MGD). This GMP attachment step is catalyzed by MobA, by linking a guanosine 5'-phosphate to MPT forming molybdopterin guanine dinucleotide. This reaction requires GTP, MgCl2, and the MPT form of the cofactor. It is a reaction unique to prokaryotes, and therefore may represent a potential drug target.
Probab=99.55 E-value=1.1e-13 Score=121.20 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=84.4
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
|.+||||||.|+||++ ||+|+|++|+ |||+|+++.+... +++++|++++.... +. . + +
T Consensus 1 ~~~iILAgG~s~Rmg~-----~K~ll~~~g~-~ll~~~i~~l~~~-~~~iivv~~~~~~~---~~-~-~----~------ 58 (181)
T cd02503 1 ITGVILAGGKSRRMGG-----DKALLELGGK-PLLEHVLERLKPL-VDEVVISANRDQER---YA-L-L----G------ 58 (181)
T ss_pred CcEEEECCCccccCCC-----CceeeEECCE-EHHHHHHHHHHhh-cCEEEEECCCChHH---Hh-h-c----C------
Confidence 4689999999999973 9999999999 9999999999988 89999999876543 11 1 1 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEE
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
+.++..... ..|...+++.+...++ .+.+++++||+ +...+ +..+++.+ ..+.++.+
T Consensus 59 -~~~v~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~-~~~~~~~~ 117 (181)
T cd02503 59 -VPVIPDEPP--------GKGPLAGILAALRAAP------ADWVLVLACDMPFLPPELLERLLAAA-EEGADAVV 117 (181)
T ss_pred -CcEeeCCCC--------CCCCHHHHHHHHHhcC------CCeEEEEeCCcCCCCHHHHHHHHHhh-ccCCCEEE
Confidence 223322211 2488899999988775 48999999999 55554 67777766 33444433
No 78
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.54 E-value=1.4e-13 Score=126.60 Aligned_cols=71 Identities=27% Similarity=0.281 Sum_probs=58.8
Q ss_pred HhhhcCCCcceEeCCCcEEee-eEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCc
Q 014564 350 ASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGF 420 (422)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~ 420 (422)
++++|+.-..+.||+++.|.| +.|++||+||++|.|.++.++.+...+|+++.|++.+.+ ||+++.|++.+
T Consensus 215 T~Idrga~~dTvIg~~~kIdN~vqIaHnv~IG~~~~I~~~vgIaGs~~IG~~v~igg~vgI~gh~~IgD~~~I~~~~ 291 (338)
T COG1044 215 TTIDRGALDDTVIGEGVKIDNLVQIGHNVRIGEHCIIAGQVGIAGSVKIGKYVIIGGQVGIAGHLEIGDGVTIGARS 291 (338)
T ss_pred ceeccccccCceecCCcEEcceeEEccccEECCCcEEeccceeeccceECCeEEECcceeecCceEEcCCCEEeccc
Confidence 446666545578888999986 999999999999999999999999999999999999765 66666666654
No 79
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.52 E-value=1.7e-13 Score=125.57 Aligned_cols=145 Identities=19% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcc------------eEEECC
Q 014564 277 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITS-SFIE-HSVVGIRSRINANVHLKD------------TMMLGA 340 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~------------~~~~~~ 340 (422)
+|.+.+.+++.++.++.+ ..+.+. ++.||++|+|+. +.+. .+.||+++.|++++.|+. .+.+|+
T Consensus 3 hp~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~~~~~IG~~~~I~~~a~Ig~~pq~~~~~g~~~~v~IG~ 82 (255)
T PRK12461 3 HPTAVIDPSAKLGSGVEIGPFAVIGANVEIGDGTWIGPHAVILGPTRIGKNNKIHQGAVVGDEPQDFTYKGEESRLEIGD 82 (255)
T ss_pred CCCCEECCCCEECCCCEECCCCEECCCCEECCCcEEccCCEEeCCCEECCCCEEccCcEeCCCCccccccCccceeEECC
Confidence 344444444444444444 223332 455666666653 2222 455556665555555543 333443
Q ss_pred ccccch-hhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCC
Q 014564 341 DFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKN 413 (422)
Q Consensus 341 ~~~~~~-~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~ 413 (422)
+....+ +.++.--..+ ..+.||++|.+. ++.|+++|.||++++++++..+.+.++++++++|+.++.+ ||++
T Consensus 83 ~~~I~e~vtI~~gt~~g-~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V~~~~~IG~~ 161 (255)
T PRK12461 83 RNVIREGVTIHRGTKGG-GVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLVHQFCRIGAL 161 (255)
T ss_pred ceEECCccEEecCcccC-CcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEECCCCEECCC
Confidence 211111 1111000001 117888888886 6999999999999999999999999999999999999765 7888
Q ss_pred ceecCCccC
Q 014564 414 SVITDGFVI 422 (422)
Q Consensus 414 ~~i~~g~~i 422 (422)
++|++|++|
T Consensus 162 a~Vg~gs~V 170 (255)
T PRK12461 162 AMMAGGSRI 170 (255)
T ss_pred cEECCCceE
Confidence 888888764
No 80
>COG2068 Uncharacterized MobA-related protein [General function prediction only]
Probab=99.52 E-value=4.9e-13 Score=114.61 Aligned_cols=191 Identities=21% Similarity=0.232 Sum_probs=130.2
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
+.++-+||||||.|+||+ .+|.|+|+.|+ ||+.++++.+.+++++++++|+++...+....+.. ..+
T Consensus 3 ~~~v~~VvLAAGrssRmG-----~~KlLap~~g~-plv~~~~~~a~~a~~~~vivV~g~~~~~~~~a~~~----~~~--- 69 (199)
T COG2068 3 PSTVAAVVLAAGRSSRMG-----QPKLLAPLDGK-PLVRASAETALSAGLDRVIVVTGHRVAEAVEALLA----QLG--- 69 (199)
T ss_pred CcceEEEEEcccccccCC-----CcceecccCCC-cHHHHHHHHHHhcCCCeEEEEeCcchhhHHHhhhc----cCC---
Confidence 456789999999999998 99999999999 99999999999999999999999873222222211 122
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++...+. ..|.+.|++.+.+.+... .+.+++..||+ +....+..+++.+..++ . ..
T Consensus 70 ----~~~v~npd~--------~~Gls~Sl~ag~~a~~~~----~~~v~~~lgDmP~V~~~t~~rl~~~~~~~~-~---~v 129 (199)
T COG2068 70 ----VTVVVNPDY--------AQGLSTSLKAGLRAADAE----GDGVVLMLGDMPQVTPATVRRLIAAFRARG-A---AV 129 (199)
T ss_pred ----eEEEeCcch--------hhhHhHHHHHHHHhcccC----CCeEEEEeCCCCCCCHHHHHHHHHhccccC-c---ee
Confidence 333332222 359999999999988741 25899999999 45555888888887662 2 12
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCc--e
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQF--L 241 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~--i 241 (422)
.+... -...+-.+|++..|..+.+... + .=.+.+++... +
T Consensus 130 ~p~~~-------------------------------g~rG~Pv~~~~~~~~~l~~l~G----D---~G~r~ll~~~~~~~ 171 (199)
T COG2068 130 RPVYG-------------------------------GARGHPVLLSKDLFPALARLSG----D---VGARQLLEEGGLPL 171 (199)
T ss_pred eeecc-------------------------------CCcCCceeechhHHHHHhhcCC----c---hhHHHHHHhcCcce
Confidence 21111 0113455777887765443221 1 11455555433 3
Q ss_pred eEEEe-cceEeecCCHHHHHHHHHhcc
Q 014564 242 KAYLF-NDYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 242 ~~~~~-~~~~~di~t~~~~~~a~~~ll 267 (422)
..++. .+...|+|||++|..++..+.
T Consensus 172 ~~V~~~~g~llDVDTped~~~a~~~~~ 198 (199)
T COG2068 172 VEVEVDAGVLLDVDTPEDLARAQDLLR 198 (199)
T ss_pred EeeccCCceEecCCCHHHHHHHHHhhc
Confidence 33444 577999999999999987654
No 81
>PRK02726 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.51 E-value=7.7e-13 Score=117.66 Aligned_cols=187 Identities=19% Similarity=0.234 Sum_probs=114.0
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
+++.+||||||.|+||+ .+|+|++++|+ |||+|+++.+... +++++|++++ .+....... .+
T Consensus 6 ~~~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~l~~~-~~~ivvv~~~-~~~~~~~~~------~~---- 67 (200)
T PRK02726 6 NNLVALILAGGKSSRMG-----QDKALLPWQGV-PLLQRVARIAAAC-ADEVYIITPW-PERYQSLLP------PG---- 67 (200)
T ss_pred CCceEEEEcCCCcccCC-----CCceeeEECCE-eHHHHHHHHHHhh-CCEEEEECCC-HHHHHhhcc------CC----
Confidence 45789999999999996 58999999999 9999999999764 7899888753 222222111 11
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~ 164 (422)
+.++..... ..|...+++.++..++ .+.+++++||+ ++..+ +..+++............ .
T Consensus 68 ---~~~i~~~~~--------~~G~~~si~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~~~~-~ 129 (200)
T PRK02726 68 ---CHWLREPPP--------SQGPLVAFAQGLPQIK------TEWVLLLACDLPRLTVDVLQEWLQQLENVPEEAIAA-L 129 (200)
T ss_pred ---CeEecCCCC--------CCChHHHHHHHHHhCC------CCcEEEEeCCCCCCCHHHHHHHHHHhhcCCCCceEE-E
Confidence 233332221 1488899999998875 37899999999 65555 566777654322221111 1
Q ss_pred ecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeEE
Q 014564 165 PMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKAY 244 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~~ 244 (422)
...+ ... .- .++ +|++..+..+.+...... .-+..++++..+...
T Consensus 130 ~~~~--~~~------------------------~P--l~~--~~~~~~~~~l~~~~~~g~-----~~l~~~l~~~~~~~v 174 (200)
T PRK02726 130 PKQE--KGW------------------------EP--LCG--FYRRRCLPSLEQFIQQGG-----RSFQGWLAQVPVQEL 174 (200)
T ss_pred ecCC--CCc------------------------cc--EEe--eecHHHHHHHHHHHHhCC-----ccHHHHHhhCCceEe
Confidence 1111 000 00 112 467776665433221111 123334444444444
Q ss_pred Eec--ceEeecCCHHHHHHHHH
Q 014564 245 LFN--DYWEDIGTIRSFFEANL 264 (422)
Q Consensus 245 ~~~--~~~~di~t~~~~~~a~~ 264 (422)
++. +.+.|+|||+||..++.
T Consensus 175 ~~~~~~~~~ninTped~~~~~~ 196 (200)
T PRK02726 175 ALSDPDMLFNCNTPEDLATIQG 196 (200)
T ss_pred cCCCchhhccCCCHHHHHHHhh
Confidence 443 45789999999987765
No 82
>cd02513 CMP-NeuAc_Synthase CMP-NeuAc_Synthase activates N-acetylneuraminic acid by adding CMP moiety. CMP-N-acetylneuraminic acid synthetase (CMP-NeuAc synthetase) or acylneuraminate cytidylyltransferase catalyzes the transfer the CMP moiety of CTP to the anomeric hydroxyl group of NeuAc in the presence of Mg++. It is the second to last step in the sialylation of the oligosaccharide component of glycoconjugates by providing the activated sugar-nucleotide cytidine 5'-monophosphate N-acetylneuraminic acid (CMP-Neu5Ac), the substrate for sialyltransferases. Eukaryotic CMP-NeuAc synthetases are predominantly located in the nucleus. The activated CMP-Neu5Ac diffuses from the nucleus into the cytoplasm.
Probab=99.51 E-value=9.3e-13 Score=119.39 Aligned_cols=211 Identities=18% Similarity=0.192 Sum_probs=130.9
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
++.+||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++|+|++ ..+.+.+++.+. +. .
T Consensus 1 ~~~~iIlA~G~s~R~~------~K~l~~l~Gk-pll~~~l~~l~~~~~~~~IvV~~--~~~~i~~~~~~~---~~--~-- 64 (223)
T cd02513 1 KILAIIPARGGSKGIP------GKNIRPLGGK-PLIAWTIEAALESKLFDRVVVST--DDEEIAEVARKY---GA--E-- 64 (223)
T ss_pred CeEEEEecCCCCCCCC------CcccchhCCc-cHHHHHHHHHHhCCCCCEEEEEC--CcHHHHHHHHHh---CC--C--
Confidence 3579999999999993 5999999999 99999999999987 78887766 345555555331 10 0
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-ee-ecChHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LY-RMDYMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~-~~~l~~ll~~~~~~~~~~tl~~~ 164 (422)
+.+..+..... ...|+.++++.+...+.... ...+.++++.||. +. ...+.++++.+...+++.++.+.
T Consensus 65 ---~~~~~~~~~~~-----~~~~~~~~i~~~l~~l~~~~-~~~d~vlv~~~D~P~i~~~~i~~~i~~~~~~~~~~~~~~~ 135 (223)
T cd02513 65 ---VPFLRPAELAT-----DTASSIDVILHALDQLEELG-RDFDIVVLLQPTSPLRSAEDIDEAIELLLSEGADSVFSVT 135 (223)
T ss_pred ---ceeeCChHHCC-----CCCCcHHHHHHHHHHHHHhC-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHhCCCCEEEEEE
Confidence 11111110000 01378889999888775210 0136899999999 44 44589999988876677666665
Q ss_pred ecCCCCCcccCCceeeeccc-eeeeeeec--C---CCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhccc
Q 014564 165 PMDDSEKPKGKDLKAMAVDT-TVLGLSKQ--E---AEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANE 238 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~-~v~~~~~k--~---~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~ 238 (422)
+..+ .| +.......++ .+..+.++ . .....+..++|+|+++++.+.+. ... -+
T Consensus 136 ~~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~n~~~y~~~~~~~~~~-------~~~----------~g 194 (223)
T cd02513 136 EFHR--FP--WRALGLDDNGLEPVNYPEDKRTRRQDLPPAYHENGAIYIAKREALLES-------NSF----------FG 194 (223)
T ss_pred ecCc--Cc--HHheeeccCCceeccCcccccCCcCCChhHeeECCEEEEEEHHHHHhc-------CCc----------cC
Confidence 5432 11 1111111111 12121111 1 11224567889999999876421 111 14
Q ss_pred CceeEEEecc-eEeecCCHHHHHHHHH
Q 014564 239 QFLKAYLFND-YWEDIGTIRSFFEANL 264 (422)
Q Consensus 239 ~~i~~~~~~~-~~~di~t~~~~~~a~~ 264 (422)
.++..+..+. .-.||++++|+..+..
T Consensus 195 ~~~~~~~~~~~~~~dI~~~~D~~~ae~ 221 (223)
T cd02513 195 GKTGPYEMPRERSIDIDTEEDFELAEA 221 (223)
T ss_pred CCeEEEEeCccceeCCCCHHHHHHHHH
Confidence 5666666665 4799999999988754
No 83
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.51 E-value=1.6e-13 Score=126.81 Aligned_cols=148 Identities=17% Similarity=0.201 Sum_probs=92.5
Q ss_pred ccCCCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcc------------eEEE
Q 014564 275 FYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITS-SFIE-HSVVGIRSRINANVHLKD------------TMML 338 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~------------~~~~ 338 (422)
.++|.+.+.+++.+++++.+ +.+.+. ++.||++|.|+. +.+. ++.||++|.|+++|.|++ .+.+
T Consensus 4 ~I~p~a~I~~~a~Ig~~v~Igp~~~I~~~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~g~~~~v~I 83 (262)
T PRK05289 4 KIHPTAIVEPGAKIGENVEIGPFCVIGPNVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYKGEPTRLVI 83 (262)
T ss_pred ccCCCCEECCCCEECCCCEECCCeEECCCCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeecccCCCCeEEE
Confidence 34455555555555555544 233332 466666666663 2232 566666666666666654 3445
Q ss_pred CCccccch-hhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----Ec
Q 014564 339 GADFYETD-AEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----IL 411 (422)
Q Consensus 339 ~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig 411 (422)
|++....+ +.++.--......+.||+++.|. ++.|+++|.||+++++.+...+.+.+.|+++++|+.++.+ ||
T Consensus 84 G~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~i~~~v~Ig 163 (262)
T PRK05289 84 GDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTAVHQFVRIG 163 (262)
T ss_pred CCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecceecCCCEEC
Confidence 54322111 11111000001126788888886 6888899999999999998888999999999999988765 78
Q ss_pred CCceecCCccC
Q 014564 412 KNSVITDGFVI 422 (422)
Q Consensus 412 ~~~~i~~g~~i 422 (422)
++++|++||+|
T Consensus 164 ~~~~Ig~gs~V 174 (262)
T PRK05289 164 AHAMVGGMSGV 174 (262)
T ss_pred CCCEEeeecce
Confidence 88888888875
No 84
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=99.49 E-value=1.2e-12 Score=112.79 Aligned_cols=230 Identities=17% Similarity=0.243 Sum_probs=159.6
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~ 86 (422)
+++.+||+|-=.+||| --|||-.|+|+ |||.|+.++..++|.++++|.+ +.+++.+.+++. +
T Consensus 2 ~~~~viIPAR~~STRL------pgKPLadI~Gk-pmI~rV~e~a~~s~~~rvvVAT--Dde~I~~av~~~---G------ 63 (247)
T COG1212 2 MKFVVIIPARLASTRL------PGKPLADIGGK-PMIVRVAERALKSGADRVVVAT--DDERIAEAVQAF---G------ 63 (247)
T ss_pred CceEEEEecchhcccC------CCCchhhhCCc-hHHHHHHHHHHHcCCCeEEEEc--CCHHHHHHHHHh---C------
Confidence 5678899998889998 56999999999 9999999999999999999999 567788888652 2
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~ 164 (422)
.+.+.-..+. ..||- -+..+...+.- ..++-++-+-||. ++++. +.++++...+.++++.-+..
T Consensus 64 ---~~avmT~~~h-------~SGTd-R~~Ev~~~l~~---~~~~iIVNvQGDeP~i~p~~I~~~~~~L~~~~~~~aTl~~ 129 (247)
T COG1212 64 ---GEAVMTSKDH-------QSGTD-RLAEVVEKLGL---PDDEIIVNVQGDEPFIEPEVIRAVAENLENSNADMATLAV 129 (247)
T ss_pred ---CEEEecCCCC-------CCccH-HHHHHHHhcCC---CcceEEEEccCCCCCCCHHHHHHHHHHHHhCCcceeeeee
Confidence 2222211121 23664 44444444432 1246778889999 66665 67888888777777655555
Q ss_pred ecCCCCCcccCC-cee-eeccceeeeeeecCCCC-------CCceeeeeEEEEeHHHHHHHHhhhCCCCCcc-ccchhhh
Q 014564 165 PMDDSEKPKGKD-LKA-MAVDTTVLGLSKQEAEE-------KPYIASMGVYLFKKEILLNLLRWRFPTANDF-GSEIIPA 234 (422)
Q Consensus 165 ~~~~~~k~~~~~-~~~-~~~d~~v~~~~~k~~~~-------~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~-~~~~l~~ 234 (422)
+..+.+....+. +++ .|.+++-+.|+..+.+- ...+.-.|+|.|++++|.++.......-+.. .-+.|+.
T Consensus 130 ~i~~~ee~~nPN~VKvV~d~~g~ALYFSRs~iP~~rd~~~~~p~l~HIGIYayr~~~L~~f~~~~ps~LE~~E~LEQLR~ 209 (247)
T COG1212 130 KITDEEEAFNPNVVKVVLDKEGYALYFSRAPIPYGRDNFGGTPFLRHIGIYAYRAGFLERFVALKPSPLEKIESLEQLRV 209 (247)
T ss_pred ecCCHHHhcCCCcEEEEEcCCCcEEEEEcCCCCCcccccCCcchhheeehHHhHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 554432222222 333 35567899998776431 2456678999999999988766542221111 1246788
Q ss_pred hcccCceeEEEecceE-eecCCHHHHHHHHHhccC
Q 014564 235 SANEQFLKAYLFNDYW-EDIGTIRSFFEANLALTA 268 (422)
Q Consensus 235 l~~~~~i~~~~~~~~~-~di~t~~~~~~a~~~ll~ 268 (422)
|-.+++|.....+... .-+||++||..+...+..
T Consensus 210 Le~G~kI~v~i~~~~p~~gVDT~EDLe~v~~~~~~ 244 (247)
T COG1212 210 LENGEKIHVEIVKEVPSIGVDTPEDLERVRKILSN 244 (247)
T ss_pred HHcCCeeEEEEeccCCCCCCCCHHHHHHHHHHHHh
Confidence 8889999999888654 889999999999887653
No 85
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.48 E-value=3.1e-13 Score=116.24 Aligned_cols=127 Identities=17% Similarity=0.223 Sum_probs=92.6
Q ss_pred CCCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcceEEECCccccchhhHHhh
Q 014564 277 DATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITS-SFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASL 352 (422)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~ 352 (422)
.+.+.+.+.+.+++++.+ .++.+. +++|+++|.|+. +.+. +++||++|.|++++.|.++++..+
T Consensus 9 ~~~~~i~~~v~ig~~~~I~~~a~i~~~v~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~siig~~------------ 76 (163)
T cd05636 9 EEGVTIKGPVWIGEGAIVRSGAYIEGPVIIGKGCEIGPNAYIRGYTVLGDGCVVGNSVEVKNSIIMDG------------ 76 (163)
T ss_pred CCCCEECCCeEEcCCCEECCCCEEeCCeEECCCCEECCCCEEcCCCEECCCCEECCCcEEeeeEecCC------------
Confidence 344455555555666655 444443 578888888874 4554 699999999999999988766544
Q ss_pred hcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCc------------------ccccccCCCeEEcCCeEE-----
Q 014564 353 LAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGI------------------QEADRSAEGFYIRSGVTV----- 409 (422)
Q Consensus 353 ~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~------------------~~~~~~~~~~~i~~~~~~----- 409 (422)
+.|++++.+.+++|++++.|++++.+.+...- .....++++++|+.++.+
T Consensus 77 -------~~I~~~~~i~~siIg~~~~I~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~iIg~~~~ig~~~~i~~g~~ 149 (163)
T cd05636 77 -------TKVPHLNYVGDSVLGENVNLGAGTITANLRFDDKPVKVRLKGERVDTGRRKLGAIIGDGVKTGINVSLNPGVK 149 (163)
T ss_pred -------CEeccCCEEecCEECCCCEECCCcEEcccCcCCcceEEEecCcceecCCcccCcEEcCCeEECCCcEECCCcE
Confidence 89999999999999999999999998653210 012467777777777553
Q ss_pred EcCCceecCCccC
Q 014564 410 ILKNSVITDGFVI 422 (422)
Q Consensus 410 ig~~~~i~~g~~i 422 (422)
||++++|++|++|
T Consensus 150 ig~~~~i~agsvV 162 (163)
T cd05636 150 IGPGSWVYPGCVV 162 (163)
T ss_pred ECCCCEECCCcEe
Confidence 7888888888875
No 86
>TIGR02665 molyb_mobA molybdopterin-guanine dinucleotide biosynthesis protein A, proteobacterial. In many molybdopterin-containing enzymes, including nitrate reductase and dimethylsulfoxide reductase, the cofactor is molybdopterin-guanine dinucleotide. The family described here contains MobA, molybdopterin-guanine dinucleotide biosynthesis protein A, from the Proteobacteria only. MobA can reconstitute molybdopterin-guanine dinucleotide biosynthesis without the product of the neighboring gene MobB. The probable MobA proteins of other lineages differ sufficiently that they are not included in scope of this family.
Probab=99.47 E-value=1.4e-12 Score=114.80 Aligned_cols=118 Identities=23% Similarity=0.290 Sum_probs=83.4
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
+.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++.+..+. +....+ +
T Consensus 1 ~~~iILAgG~s~Rmg----~~~K~l~~i~g~-pll~~~l~~l~~-~~~~ivv~~~~~~~~---~~~~~~----~------ 61 (186)
T TIGR02665 1 ISGVILAGGRARRMG----GRDKGLVELGGK-PLIEHVLARLRP-QVSDLAISANRNPER---YAQAGF----G------ 61 (186)
T ss_pred CeEEEEcCCccccCC----CCCCceeEECCE-EHHHHHHHHHHh-hCCEEEEEcCCCHHH---HhhccC----C------
Confidence 468999999999995 359999999999 999999999986 589998888654322 111111 1
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcE
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~ 159 (422)
+.++..... ...|+..+++.+...++ .+.++++.||. +...+ +..+++.+.+.++.+
T Consensus 62 -~~~i~~~~~-------~~~g~~~si~~al~~~~------~~~vlv~~~D~P~i~~~~i~~l~~~~~~~~~~~ 120 (186)
T TIGR02665 62 -LPVVPDALA-------DFPGPLAGILAGLRWAG------TDWVLTVPCDTPFLPEDLVARLAAALEASDADI 120 (186)
T ss_pred -CcEEecCCC-------CCCCCHHHHHHHHHhcC------CCeEEEEecCCCcCCHHHHHHHHHHhhccCCcE
Confidence 122222111 12489999999988775 47899999999 66666 577777665444444
No 87
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.47 E-value=5.8e-13 Score=117.89 Aligned_cols=144 Identities=20% Similarity=0.243 Sum_probs=97.3
Q ss_pred ccCCCCcccccCCCCCCcee-cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCcccc-chh--hH
Q 014564 275 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYE-TDA--EV 349 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~-~~~--~~ 349 (422)
.+++.+.+.+.+.+++++.+ .++.+.++.|+++|.|+. +.+.++++|+++.|++++.|+..+.++++... ..+ +.
T Consensus 23 ~I~~~a~i~~~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig~~~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~ 102 (193)
T cd03353 23 VIDPGVILEGKTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIGNGATVGPFAHLRPGTVLGEGVHIGNFVEIKK 102 (193)
T ss_pred EECCCCEEeCcCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEECCCCEECCccEEcCccEECCCCEECCcEEEec
Confidence 34455555556666666666 566677778888888884 66678888888888888888766666543110 000 00
Q ss_pred HhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCccc-ccccCCCeEEcCCeE-----EEcCCceecCCccC
Q 014564 350 ASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQE-ADRSAEGFYIRSGVT-----VILKNSVITDGFVI 422 (422)
Q Consensus 350 ~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~-~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 422 (422)
+.++.+ +.+++.+.+.+|+||++|.||+++++.+.++... ...++++++|+.+++ .||++++|++|++|
T Consensus 103 s~ig~~----~~i~~~~~i~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd~~~ig~~~~i~~~~~Ig~~~~i~~gs~V 177 (193)
T cd03353 103 STIGEG----SKANHLSYLGDAEIGEGVNIGAGTITCNYDGVNKHRTVIGDNVFIGSNSQLVAPVTIGDGATIAAGSTI 177 (193)
T ss_pred ceEcCC----CEecccceecccEECCCCEEcCceEEeccCCccccCCEECCCeEEccCCEEeCCcEECCCcEECCCCEE
Confidence 111111 4555666667788999999999998887665544 457888888888865 37889999998874
No 88
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.47 E-value=4.1e-13 Score=123.86 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=52.3
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.||++|.|. ++.|+++|.||+++.+.+...+...+.++++++|+.++.+ ||++++|+++++|
T Consensus 103 ~~IG~~~~I~~~~~I~~~~~IG~~~~i~~~~~i~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 171 (254)
T cd03351 103 TRIGNNNLLMAYVHVAHDCVIGNNVILANNATLAGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSGV 171 (254)
T ss_pred eEECCCCEECCCCEECCCCEECCCcEECCCccccCCcEeCCCcEECCcceECCCcEECCCCEECcCCEE
Confidence 7888888886 6888888888888888888888888899999999888765 6778888877764
No 89
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.46 E-value=8.2e-13 Score=125.45 Aligned_cols=63 Identities=35% Similarity=0.404 Sum_probs=51.7
Q ss_pred eEeCCCcEEee-eEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 360 VGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.||++++|.+ +.|+++|.||+++.+.+...+.+...++++++|+.++.+ ||++++|+++++|
T Consensus 218 t~Ig~~~~I~n~v~I~~~v~IG~~~~I~~~~~iag~~~IG~~~~ig~~~~I~~~v~Ig~~~~ig~~s~V 286 (324)
T TIGR01853 218 TIIGEGTKIDNLVQIAHNCRIGENCIIVAQVGIAGSTKIGRNVIIGGQVGVAGHLEIGDNVTIGAKSGV 286 (324)
T ss_pred ceecCCcEEccCcEECCCCEECCCcEECCcceEcCccEECCCeEEccccccccCCEECCCCEEccCCEe
Confidence 55666666664 788899999999999998899999999999999888765 7888888888764
No 90
>PLN02728 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
Probab=99.46 E-value=4.1e-12 Score=116.35 Aligned_cols=215 Identities=13% Similarity=0.125 Sum_probs=126.6
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecChHH-HHHHHHhhccCCCCcc
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSAS-LNRHLARAYNYGSGVT 84 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~~~-i~~~l~~~~~~~~~~~ 84 (422)
+.+.+||||||.|+||+ ...||+|++++|+ |||.|+++.+.+. ++++|+|++++...+ ++..+.+ + .. .
T Consensus 23 ~~i~aIILAAG~gsRmg---~~~pKqll~l~Gk-pll~~tl~~~~~~~~i~~IvVV~~~~~~~~~~~~~~~-~--~~--~ 93 (252)
T PLN02728 23 KSVSVILLAGGVGKRMG---ANMPKQYLPLLGQ-PIALYSLYTFARMPEVKEIVVVCDPSYRDVFEEAVEN-I--DV--P 93 (252)
T ss_pred CceEEEEEcccccccCC---CCCCcceeEECCe-EHHHHHHHHHHhCCCCCeEEEEeCHHHHHHHHHHHHh-c--CC--c
Confidence 34679999999999995 4589999999999 9999999999985 899999999876433 3333321 1 11 1
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCC--e-eeecC-hHHHHHHHHHcCCcEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGD--H-LYRMD-YMDFVQNHRQSGADIT 160 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD--~-i~~~~-l~~ll~~~~~~~~~~t 160 (422)
+.+.. .. .+..++++.+...+.. +..+|+.+| . +...+ +..+++...+.+ +.
T Consensus 94 -----i~~v~--gg---------~~r~~SV~~gl~~l~~------~~~~VlihDaarP~vs~~~i~~li~~~~~~g--a~ 149 (252)
T PLN02728 94 -----LKFAL--PG---------KERQDSVFNGLQEVDA------NSELVCIHDSARPLVTSADIEKVLKDAAVHG--AA 149 (252)
T ss_pred -----eEEcC--CC---------CchHHHHHHHHHhccC------CCCEEEEecCcCCCCCHHHHHHHHHHHhhCC--eE
Confidence 22221 11 1456788888877752 334555566 4 55555 577887766544 33
Q ss_pred EEEeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeee-eEEEEeHHHHHHHHhhhCCCCCccccchhhhh-ccc
Q 014564 161 ISCLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFPTANDFGSEIIPAS-ANE 238 (422)
Q Consensus 161 l~~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~-Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l-~~~ 238 (422)
+...+..+ .+...+.++.+.+..+. +.++.+ --..|+.+.+....+........ ..|--..+ ..+
T Consensus 150 i~~~~~~d-------tik~v~~~~~v~~t~~R-----~~l~~~QTPQ~F~~~~l~~a~~~~~~~~~~-~TDd~~~~~~~g 216 (252)
T PLN02728 150 VLGVPVKA-------TIKEANSDSFVVKTLDR-----KRLWEMQTPQVIKPELLRRGFELVEREGLE-VTDDVSIVEALK 216 (252)
T ss_pred EEeecchh-------hEEEecCCCceeeccCh-----HHeEEEeCCccchHHHHHHHHHHHHhcCCC-cCcHHHHHHHcC
Confidence 44444332 13333334433332111 111111 22355656555444443221111 12222221 125
Q ss_pred CceeEEEecceEeecCCHHHHHHHHHhcc
Q 014564 239 QFLKAYLFNDYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 239 ~~i~~~~~~~~~~di~t~~~~~~a~~~ll 267 (422)
.++..++-+..-+-|.+|+|+..+...+.
T Consensus 217 ~~V~~v~g~~~N~KITtpeDl~~a~~~l~ 245 (252)
T PLN02728 217 HPVFITEGSYTNIKVTTPDDMLVAERILN 245 (252)
T ss_pred CceEEEecCcccccCCCHHHHHHHHHHHh
Confidence 67777666666788999999999987554
No 91
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=99.44 E-value=6.3e-13 Score=115.47 Aligned_cols=147 Identities=20% Similarity=0.202 Sum_probs=96.1
Q ss_pred cCCCCcccccCCCCCCceecC-Cccc-ccEEcCCCEEccc-eee-eeEEcCCcEECCCCEEcc------------eEEEC
Q 014564 276 YDATKPIYTSRRNLPPSKIDD-SKIV-DSIISHGSFITSS-FIE-HSVVGIRSRINANVHLKD------------TMMLG 339 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~i~~~~~i~~~-~v~-~s~ig~~~~i~~~~~i~~------------~~~~~ 339 (422)
++|++.+.+.+.+++++.++. |.+. ++.|++++.|++. .|+ .+.||.+++|.+++.|++ ..++|
T Consensus 6 IHPTAiIe~gA~ig~~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~pQdlKykge~T~l~IG 85 (260)
T COG1043 6 IHPTAIIEPGAEIGEDVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGEDPQDLKYKGEPTRLIIG 85 (260)
T ss_pred cCcceeeCCCCCcCCCCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCCCcccccCCCceEEEEC
Confidence 455555555555555555422 3332 5677777777652 222 456666666655555522 23344
Q ss_pred CccccchhhHHhhhc-CCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcC
Q 014564 340 ADFYETDAEVASLLA-EGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILK 412 (422)
Q Consensus 340 ~~~~~~~~~~~~~~~-~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~ 412 (422)
++-..++-..-...+ .+...+.||+++.+- ++.|+++|+||++|++.|...+.+++.++|+++||+.+.+ ||+
T Consensus 86 ~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiGG~saVHQFvrIG~ 165 (260)
T COG1043 86 DNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIGGLSAVHQFVRIGA 165 (260)
T ss_pred CCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEcCcceEEEEEEEcc
Confidence 432222211111111 233448999999986 8999999999999999999999999999999999988765 899
Q ss_pred CceecCCccC
Q 014564 413 NSVITDGFVI 422 (422)
Q Consensus 413 ~~~i~~g~~i 422 (422)
+++||..|-|
T Consensus 166 ~amiGg~S~v 175 (260)
T COG1043 166 HAMIGGLSAV 175 (260)
T ss_pred hheecccccc
Confidence 9999987753
No 92
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.44 E-value=7e-13 Score=122.34 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=48.4
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.||+++.|. ++.++++|.||+++.+++...+...+.++++++|+.++.+ ||++++|+++++|
T Consensus 102 ~~IG~~~~I~~~~~I~~~~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 102 TRIGNNNLLMAYSHIAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred EEECCCCEECCCCEEccCCEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 6788888885 5777777788888888777777777888888888887654 6777777777764
No 93
>PRK00560 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=99.41 E-value=5.4e-12 Score=111.80 Aligned_cols=181 Identities=15% Similarity=0.251 Sum_probs=110.1
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCC-cceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGG-AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~g-k~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
.+++.+||||||.|+||+ .||+|+|+.| + |||+|+++.+... +++++|++++ +.. . +.
T Consensus 6 ~~~i~~vILAgG~s~RmG-----~~K~ll~~~g~~-~ll~~~i~~l~~~-~~~vvvv~~~--~~~----~----~~---- 64 (196)
T PRK00560 6 IDNIPCVILAGGKSSRMG-----ENKALLPFGSYS-SLLEYQYTRLLKL-FKKVYISTKD--KKF----E----FN---- 64 (196)
T ss_pred ccCceEEEECCcccccCC-----CCceEEEeCCCC-cHHHHHHHHHHHh-CCEEEEEECc--hhc----c----cC----
Confidence 456889999999999995 6999999999 9 9999999999887 8899988864 111 0 10
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
+.++...... ..|...++..+....+ .+.+++++||+ ++..+ +.+++. +.+..+.+
T Consensus 65 -----~~~v~d~~~~-------~~gpl~gi~~~l~~~~------~~~vlv~~~D~P~i~~~~i~~l~~---~~~~~~~~- 122 (196)
T PRK00560 65 -----APFLLEKESD-------LFSPLFGIINAFLTLQ------TPEIFFISVDTPFVSFESIKKLCG---KENFSVTY- 122 (196)
T ss_pred -----CcEEecCCCC-------CCCcHHHHHHHHHhcC------CCeEEEEecCcCcCCHHHHHHHHh---cCCCCEEE-
Confidence 1122221110 1255556665544333 48999999999 55655 344421 22222221
Q ss_pred EeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCcee
Q 014564 163 CLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLK 242 (422)
Q Consensus 163 ~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~ 242 (422)
. ..+ .+ ..--..+|+++.+..+.+...... .-+..++++..+.
T Consensus 123 -~-~~~-~~-----------------------------~~Pl~al~~~~~~~~l~~~l~~~~-----~~~~~ll~~~~~~ 165 (196)
T PRK00560 123 -A-KSP-TK-----------------------------EHYLISLWHQSLLNALIYALKTQN-----YRLSDLVKNTSSQ 165 (196)
T ss_pred -E-ccC-Cc-----------------------------eeeeEEEEcHHHHHHHHHHHHhCC-----ccHHHHHHHCCcE
Confidence 1 110 00 011235788888876543221111 1234445554555
Q ss_pred EEEec--ceEeecCCHHHHHHHHHhc
Q 014564 243 AYLFN--DYWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 243 ~~~~~--~~~~di~t~~~~~~a~~~l 266 (422)
.+++. +.|.|+|||+||..+.+.+
T Consensus 166 ~v~~~~~~~~~dinT~eDl~~~~~~~ 191 (196)
T PRK00560 166 AVHFEDEEEFLNLNTLKDYELALQIL 191 (196)
T ss_pred EecCCCCccccCCCCHHHHHHHHHHH
Confidence 55554 3578999999998887655
No 94
>TIGR03202 pucB xanthine dehydrogenase accessory protein pucB. In Bacillus subtilis the expression of this protein, located in an operon with the structural subunits of xanthine dehydrogenase, has been found to be essential for XDH activity. Some members of this family appear to have a distant relationship to the MobA protein involved in molybdopterin biosynthesis, although this may be coincidental.
Probab=99.41 E-value=5.1e-12 Score=111.62 Aligned_cols=125 Identities=19% Similarity=0.257 Sum_probs=85.5
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDG 88 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~ 88 (422)
+.+||||||.|+||+ .||.|++++|+ |||+|+++.+.+.++++++|++++..+.+. .+.+.. .. ..
T Consensus 1 ~~~vILAgG~s~Rmg-----~~K~ll~~~g~-~ll~~~i~~~~~~~~~~i~vv~~~~~~~~~-~~~~~~-~~-~~----- 66 (190)
T TIGR03202 1 IVAIYLAAGQSRRMG-----ENKLALPLGET-TLGSASLKTALSSRLSKVIVVIGEKYAHLS-WLDPYL-LA-DE----- 66 (190)
T ss_pred CeEEEEcCCccccCC-----CCceeceeCCc-cHHHHHHHHHHhCCCCcEEEEeCCccchhh-hhhHhh-hc-CC-----
Confidence 358999999999997 48999999999 999999999888899999999987654321 111110 00 00
Q ss_pred eEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCc
Q 014564 89 CVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (422)
Q Consensus 89 ~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~ 158 (422)
.+.++.... +..|.+.+++.++..+... ..+.+++++||+ ++..+ +..+++........
T Consensus 67 ~~~~~~~~~--------~~~G~~~si~~gl~~~~~~---~~d~vlv~~~D~P~v~~~~i~~L~~~~~~~~~~ 127 (190)
T TIGR03202 67 RIMLVCCRD--------ACEGQAHSLKCGLRKAEAM---GADAVVILLADQPFLTADVINALLALAKRRPDD 127 (190)
T ss_pred CeEEEECCC--------hhhhHHHHHHHHHHHhccC---CCCeEEEEeCCCCCCCHHHHHHHHHHHhhCCCC
Confidence 122322111 1237889999998876321 147899999999 55555 57777765544433
No 95
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.41 E-value=4.1e-12 Score=122.37 Aligned_cols=63 Identities=29% Similarity=0.302 Sum_probs=53.9
Q ss_pred eEeCCCcEEee-eEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 360 VGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.||+++++.+ +.|+++|+||+++.+.++..+.+.+.+|++++|+.++.+ ||++++|++++.|
T Consensus 226 t~Ig~~~~i~~~v~I~~~~~IG~~~~i~~~~~i~~~~~iG~~~~ig~~~~i~~~~~ig~~~~i~~~s~v 294 (343)
T PRK00892 226 TVIGEGVKIDNLVQIAHNVVIGRHTAIAAQVGIAGSTKIGRYCMIGGQVGIAGHLEIGDGVTITAMSGV 294 (343)
T ss_pred ceeCCCCEEeCCeEEccCCEECCCcEEeeeeeecCCCEECCceEECCCCEEcCCCEECCCCEEecCCee
Confidence 67788888874 889999999999999999999999999999999998776 7788888888764
No 96
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.41 E-value=2.9e-12 Score=101.17 Aligned_cols=102 Identities=29% Similarity=0.461 Sum_probs=84.0
Q ss_pred cee-cCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEee
Q 014564 292 SKI-DDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE 370 (422)
Q Consensus 292 ~~~-~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~ 370 (422)
+++ +++.+.++.||++|.|+++.+.+|+++++++|++++.|.++.+.++ +.||.++.+.+
T Consensus 2 ~~i~~~~~i~~s~Ig~~~~I~~~~I~~svi~~~~~Ig~~~~I~~siI~~~-------------------~~Ig~~~~i~~ 62 (104)
T cd04651 2 PYIGRRGEVKNSLVSEGCIISGGTVENSVLFRGVRVGSGSVVEDSVIMPN-------------------VGIGRNAVIRR 62 (104)
T ss_pred ceecCCCEEEeEEECCCCEEcCeEEEeCEEeCCCEECCCCEEEEeEEcCC-------------------CEECCCCEEEe
Confidence 444 5677788999999999977889999999999999999999988766 89999999999
Q ss_pred eEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCcee
Q 014564 371 CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVI 416 (422)
Q Consensus 371 ~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i 416 (422)
|++|++|.|++++.+.+...... .+..+..++.++|++++.+
T Consensus 63 siig~~~~Ig~~~~v~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 104 (104)
T cd04651 63 AIIDKNVVIPDGVVIGGDPEEDR----ARFYVTEDGIVVVGKGMVI 104 (104)
T ss_pred EEECCCCEECCCCEECCCccccc----ccceEcCCeEEEEecccCC
Confidence 99999999999999987532211 1455567777778777653
No 97
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=99.41 E-value=7.2e-12 Score=121.51 Aligned_cols=189 Identities=17% Similarity=0.223 Sum_probs=117.6
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
|+++.+||||||.|+||+ ..||+|+|++|+ |||+|+++.+.. .+++++|++....+.+.+++. .
T Consensus 3 ~~~i~~VILAgG~s~Rmg----g~~K~ll~i~Gk-pll~~~i~~l~~-~~~~iivvv~~~~~~~~~~~~-------~--- 66 (366)
T PRK14489 3 ISQIAGVILAGGLSRRMN----GRDKALILLGGK-PLIERVVDRLRP-QFARIHLNINRDPARYQDLFP-------G--- 66 (366)
T ss_pred CCCceEEEEcCCcccCCC----CCCCceeEECCe-eHHHHHHHHHHh-hCCEEEEEcCCCHHHHHhhcc-------C---
Confidence 456889999999999994 379999999999 999999999986 499999977655444433221 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~ 163 (422)
+.++..... ...|...+++.+...++ .+.+++++||+ ++..+ +..+++.+...++++.+.
T Consensus 67 ----~~~i~d~~~-------g~~G~~~si~~gl~~~~------~~~vlv~~~D~P~i~~~~i~~L~~~~~~~~~~~v~~- 128 (366)
T PRK14489 67 ----LPVYPDILP-------GFQGPLSGILAGLEHAD------SEYLFVVACDTPFLPENLVKRLSKALAIEGADIAVP- 128 (366)
T ss_pred ----CcEEecCCC-------CCCChHHHHHHHHHhcC------CCcEEEeeCCcCCCCHHHHHHHHHHhhccCCeEEEE-
Confidence 112211111 01378889999888765 37799999998 55555 567777655555554321
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeE
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKA 243 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~ 243 (422)
... .. ..-.+| +|+++.+..+.+ ..+... .-+..++++..+..
T Consensus 129 --~~g--~~--------------------------g~Pl~a--iy~~~~~~~l~~-~l~~G~----~~l~~~l~~~~~~~ 171 (366)
T PRK14489 129 --HDG--ER--------------------------AHPLFA--LYHRSCLPALRR-YLAEGE----RRLFDFFQRQRVRY 171 (366)
T ss_pred --ecC--CC--------------------------ceeeEE--EEcHHHHHHHHH-HHHhCC----ccHHHHHHhCCcEE
Confidence 111 00 000112 467777765543 211111 12233334444544
Q ss_pred EEec---ceEeecCCHHHHHHHHHh
Q 014564 244 YLFN---DYWEDIGTIRSFFEANLA 265 (422)
Q Consensus 244 ~~~~---~~~~di~t~~~~~~a~~~ 265 (422)
.+++ ..+.|+|||+||..+...
T Consensus 172 v~~~~~~~~~~nINTpeDl~~l~~~ 196 (366)
T PRK14489 172 VDLSTQKDAFFNVNTPEDLEQLRAI 196 (366)
T ss_pred EeccCCccccccCCCHHHHHHHhhh
Confidence 5443 347899999999887654
No 98
>PF01128 IspD: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; InterPro: IPR001228 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, a bacterial ispD protein, catalyzes the third step of the deoxyxylulose-5-phosphate pathway (DXP) of isoprenoid biosynthesis; the formation of 4-diphosphocytidyl-2C-methyl-D-erythritol from CTP and 2C-methyl-D-erythritol 4-phosphate []. The isoprenoid pathway is a well known target for anti-infective drug development [, ].; GO: 0003824 catalytic activity, 0008299 isoprenoid biosynthetic process; PDB: 1VGW_F 1VGZ_A 1W77_A 2YC3_A 2YCM_A 2YC5_A 1VGU_A 3N9W_B 1I52_A 1H3M_B ....
Probab=99.38 E-value=1.8e-11 Score=109.28 Aligned_cols=212 Identities=17% Similarity=0.217 Sum_probs=124.8
Q ss_pred eeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh-HHHHHHHHhhccCCCCcccC
Q 014564 9 VAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVTFG 86 (422)
Q Consensus 9 ~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~~~ 86 (422)
+-|||||||.|+||. ...||++++++|+ |+|.|+|+.+.+. .+++|+|++.... +.+++.+.+ .
T Consensus 1 V~aIilAaG~G~R~g---~~~pKQf~~l~Gk-pvl~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~-~--------- 66 (221)
T PF01128_consen 1 VAAIILAAGSGSRMG---SGIPKQFLELGGK-PVLEYTLEAFLASPEIDEIVVVVPPEDIDYVEELLSK-K--------- 66 (221)
T ss_dssp EEEEEEESS-STCCT---SSS-GGGSEETTE-EHHHHHHHHHHTTTTESEEEEEESGGGHHHHHHHHHH-T---------
T ss_pred CEEEEeCCccchhcC---cCCCCeeeEECCe-EeHHHHHHHHhcCCCCCeEEEEecchhHHHHHHhhcC-C---------
Confidence 368999999999997 5699999999999 9999999999886 7999999998766 344444333 1
Q ss_pred CCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEe
Q 014564 87 DGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 87 ~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~ 164 (422)
.+.++..-. ...+|++++...+.+. .+.+|+..|=- +...+ +.++++..++. ..+.+...
T Consensus 67 --~v~iv~GG~-----------tR~~SV~ngL~~l~~~----~d~VlIHDaaRPfv~~~~i~~~i~~~~~~-~~aai~~~ 128 (221)
T PF01128_consen 67 --KVKIVEGGA-----------TRQESVYNGLKALAED----CDIVLIHDAARPFVSPELIDRVIEAAREG-HGAAIPAL 128 (221)
T ss_dssp --TEEEEE--S-----------SHHHHHHHHHHCHHCT----SSEEEEEETTSTT--HHHHHHHHHHHHHT-CSEEEEEE
T ss_pred --CEEEecCCh-----------hHHHHHHHHHHHHHcC----CCEEEEEccccCCCCHHHHHHHHHHHHhh-cCcEEEEE
Confidence 144544221 3678999998888752 25666666654 44444 57777776552 33445555
Q ss_pred ecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeee-eEEEEeHHHHHHHHhhhCCCCCccccc--hhhhhcccCce
Q 014564 165 PMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFPTANDFGSE--IIPASANEQFL 241 (422)
Q Consensus 165 ~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~-Giy~~~~~~l~~ll~~~~~~~~~~~~~--~l~~l~~~~~i 241 (422)
+..+ .+...+.++.+.+..+. +.++.+ --..|+.+.+.+..+........+..| ++.. .+.++
T Consensus 129 p~~D-------Tik~v~~~~~v~~tldR-----~~l~~~QTPQ~F~~~~l~~a~~~a~~~~~~~tDdasl~~~--~g~~v 194 (221)
T PF01128_consen 129 PVTD-------TIKRVDDDGFVTETLDR-----SKLWAVQTPQAFRFELLLEAYEKADEEGFEFTDDASLVEA--AGKKV 194 (221)
T ss_dssp E-SS-------EEEEESTTSBEEEEETG-----GGEEEEEEEEEEEHHHHHHHHHTHHHHTHHHSSHHHHHHH--TTS-E
T ss_pred eccc-------cEEEEecCCcccccCCH-----HHeeeecCCCeecHHHHHHHHHHHHhcCCCccCHHHHHHH--cCCCE
Confidence 4443 24444555655554332 222222 355777777766554431111122122 2222 26777
Q ss_pred eEEEecceEeecCCHHHHHHHHHhc
Q 014564 242 KAYLFNDYWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~~~l 266 (422)
+.++-+..-+-+.+|+|+..+...+
T Consensus 195 ~~V~G~~~N~KIT~peDl~~ae~ll 219 (221)
T PF01128_consen 195 AIVEGSPRNIKITTPEDLELAEALL 219 (221)
T ss_dssp EEEE--TTG----SHHHHHHHHHHH
T ss_pred EEEeCCCCceeECCHHHHHHHHHHh
Confidence 7777766678899999999887654
No 99
>cd03351 LbH_UDP-GlcNAc_AT UDP-N-acetylglucosamine O-acyltransferase (UDP-GlcNAc acyltransferase): Proteins in this family catalyze the transfer of (R)-3-hydroxymyristic acid from its acyl carrier protein thioester to UDP-GlcNAc. It is the first enzyme in the lipid A biosynthetic pathway and is also referred to as LpxA. Lipid A is essential for the growth of Escherichia coli and related bacteria. It is also essential for maintaining the integrity of the outer membrane. UDP-GlcNAc acyltransferase is a homotrimer of left-handed parallel beta helix (LbH) subunits. Each subunit contains an N-terminal LbH region with 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal alpha-helical region.
Probab=99.37 E-value=3.1e-12 Score=118.05 Aligned_cols=35 Identities=17% Similarity=0.240 Sum_probs=14.9
Q ss_pred CCCcEECCCeEEccCCCcccccccCCCeEEcCCeE
Q 014564 374 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT 408 (422)
Q Consensus 374 ~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~ 408 (422)
+++|+||+++++++...+...+.|+++++|+.+++
T Consensus 136 ~~~v~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~ 170 (254)
T cd03351 136 AGHVEIGDYAIIGGLSAVHQFCRIGRHAMVGGGSG 170 (254)
T ss_pred cCCcEeCCCcEECCcceECCCcEECCCCEECcCCE
Confidence 33344444444444444444444444444444433
No 100
>TIGR01852 lipid_A_lpxA acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase. This model describes LpxA, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species, but this protein represents the first step (from UDP-N-acetyl-D-glucosamine) and appears to be conserved in function. Proteins from this family contain many copies of the bacterial transferase hexapeptide repeat (pfam00132).
Probab=99.34 E-value=1e-11 Score=114.63 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=29.5
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 409 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ 409 (422)
|.||++|.|. ++.++++++||+++++++...+...+.|+++++|+.++++
T Consensus 120 ~~Ig~~~~i~~~~~i~~~~~Igd~~~Ig~~~~i~~~v~Ig~~~~Ig~~s~V 170 (254)
T TIGR01852 120 CVVGNHVILANNATLAGHVEVGDYAIIGGLVAVHQFVRIGRYAMIGGLSAV 170 (254)
T ss_pred CEECCCCEECCCCEECCCcEECCCcEEeccCEECCCcEECCCCEEeeeeeE
Confidence 4445555554 3555555666666666666666666666666666666554
No 101
>cd02518 GT2_SpsF SpsF is a glycosyltrnasferase implicated in the synthesis of the spore coat. Spore coat polysaccharide biosynthesis protein F (spsF) is a glycosyltransferase implicated in the synthesis of the spore coat in a variety of bacteria challenged by stress as starvation. The spsF gene is expressed in the late stage of coat development responsible for a terminal step in coat formation that involves the glycosylation of the coat. SpsF gene mutation resulted in spores that appeared normal. But, the spores tended to aggregate and had abnormal adsorption properties, indicating a surface alteration.
Probab=99.33 E-value=6e-11 Score=108.30 Aligned_cols=187 Identities=19% Similarity=0.227 Sum_probs=113.3
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecCh--HHHHHHHHhhccCCCCcccCC
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~ 87 (422)
|||||+|.|+||. +|+|+|++|+ |||+|+++.+.+++ +++++|+++... +.+.+++.. . +
T Consensus 2 aiIlA~G~S~R~~------~K~ll~l~Gk-pli~~~i~~l~~~~~~~~ivVv~~~~~~~~~i~~~~~~-~----~----- 64 (233)
T cd02518 2 AIIQARMGSTRLP------GKVLKPLGGK-PLLEHLLDRLKRSKLIDEIVIATSTNEEDDPLEALAKK-L----G----- 64 (233)
T ss_pred EEEeeCCCCCCCC------CCcccccCCc-cHHHHHHHHHHhCCCCCeEEEECCCCcccHHHHHHHHH-c----C-----
Confidence 7999999999992 5999999999 99999999999987 899999998664 456555532 1 1
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEEEee
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITISCLP 165 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~~~~ 165 (422)
+.++..... +.......+....+ .+.++++.||+ ++..+ +..+++.+...+.+.+. ..
T Consensus 65 --v~~v~~~~~----------~~l~~~~~~~~~~~------~d~vli~~~D~P~i~~~~i~~li~~~~~~~~~~~~--~~ 124 (233)
T cd02518 65 --VKVFRGSEE----------DVLGRYYQAAEEYN------ADVVVRITGDCPLIDPEIIDAVIRLFLKSGADYTS--NT 124 (233)
T ss_pred --CeEEECCch----------hHHHHHHHHHHHcC------CCEEEEeCCCCCCCCHHHHHHHHHHHHhCCCCEEe--cC
Confidence 223321111 11111222221122 47899999999 55555 78888888766655543 11
Q ss_pred cCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccC--ceeE
Q 014564 166 MDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQ--FLKA 243 (422)
Q Consensus 166 ~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~--~i~~ 243 (422)
. ....| ...+.-+|+...+..+.....+. -....+...++++ .+..
T Consensus 125 ~-~~g~P----------------------------v~~~~~~~~~~~~~~l~~~~gd~---g~r~~~~~~i~~~~~~~~~ 172 (233)
T cd02518 125 L-PRTYP----------------------------DGLDVEVFTRDALERAAAEADDP---YEREHVTPYIRRHPELFRI 172 (233)
T ss_pred C-CCCCC----------------------------CceEEEEEEHHHHHHHHHhCCCh---hhhcCCCHHHHhChHHeEE
Confidence 1 10111 12357788888887665442211 1122332233322 2332
Q ss_pred EEecc-------eEeecCCHHHHHHHHHhc
Q 014564 244 YLFND-------YWEDIGTIRSFFEANLAL 266 (422)
Q Consensus 244 ~~~~~-------~~~di~t~~~~~~a~~~l 266 (422)
...++ ...|+|||+||..+...+
T Consensus 173 ~~~~~~~~~~~~~~~DiDt~eD~~~~~~~~ 202 (233)
T cd02518 173 GYLEAPPDRLSDLRLTVDTPEDFELIKEIY 202 (233)
T ss_pred eeecCCcccCcCceEecCCHHHHHHHHHHH
Confidence 22222 378999999998877544
No 102
>COG0746 MobA Molybdopterin-guanine dinucleotide biosynthesis protein A [Coenzyme metabolism]
Probab=99.32 E-value=3.2e-11 Score=105.55 Aligned_cols=183 Identities=20% Similarity=0.233 Sum_probs=112.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
+.+|.+||||||.|+|| .+|+|+++.|+ ||++|+++.|....- .++|....+.+. +.. + +
T Consensus 2 ~~~~~~vILAGG~srRm------~dK~l~~~~g~-~lie~v~~~L~~~~~-~vvi~~~~~~~~---~~~----~--g--- 61 (192)
T COG0746 2 MTPMTGVILAGGKSRRM------RDKALLPLNGR-PLIEHVIDRLRPQVD-VVVISANRNQGR---YAE----F--G--- 61 (192)
T ss_pred CCCceEEEecCCccccc------cccccceeCCe-EHHHHHHHHhcccCC-EEEEeCCCchhh---hhc----c--C---
Confidence 45789999999999999 78999999999 999999999999754 555555443321 111 1 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecCh-HHHHHHHHHcCCcEEEEE
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQNHRQSGADITISC 163 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~ll~~~~~~~~~~tl~~ 163 (422)
++++...... .|...+++.++..+. .+.+++++||+ +...++ ..+.....+.... ++.
T Consensus 62 ----~~vv~D~~~~--------~GPL~Gi~~al~~~~------~~~~~v~~~D~P~i~~~lv~~l~~~~~~~~~~--~~~ 121 (192)
T COG0746 62 ----LPVVPDELPG--------FGPLAGILAALRHFG------TEWVLVLPCDMPFIPPELVERLLSAFKQTGAA--IVP 121 (192)
T ss_pred ----CceeecCCCC--------CCCHHHHHHHHHhCC------CCeEEEEecCCCCCCHHHHHHHHHhhcccCCc--EEE
Confidence 2243332221 178889999988876 48999999999 666664 4454444433322 222
Q ss_pred eecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCceeE
Q 014564 164 LPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFLKA 243 (422)
Q Consensus 164 ~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i~~ 243 (422)
..... + ..-..++| ++.+...+.+...... .-+..+++......
T Consensus 122 ~~~~g----------------~-------------~~Pl~aly--~~~l~~~l~~~l~~g~-----~~~~~~l~~~~~~~ 165 (192)
T COG0746 122 AHDDG----------------R-------------LEPLFALY--HRALLPALEEYLAKGE-----RRLSALLERLGTEY 165 (192)
T ss_pred eCCCC----------------c-------------eeeEEEEe--hHHHHHHHHHHHHhCC-----ccHHHHHHHCCcEE
Confidence 21111 0 01123555 7666654433221111 23444455444444
Q ss_pred EEec--c--eEeecCCHHHHHHHHH
Q 014564 244 YLFN--D--YWEDIGTIRSFFEANL 264 (422)
Q Consensus 244 ~~~~--~--~~~di~t~~~~~~a~~ 264 (422)
+.+. . .+++++||+||.....
T Consensus 166 v~~~~~~~~~F~NiNtpeDL~~~~~ 190 (192)
T COG0746 166 VEFEDLEEDSFFNINTPEDLARARE 190 (192)
T ss_pred EecCcCCcccccccCCHHHHHHHhc
Confidence 4433 2 5789999999988754
No 103
>TIGR03584 PseF pseudaminic acid CMP-transferase. The sequences in this family include the pfam02348 (cytidyltransferase) domain and are homologous to the NeuA protein responsible for the transfer of CMP to neuraminic acid. According to, this gene is responsible for the transfer of CMP to the structurally related sugar, pseudaminic acid which is observed as a component of sugar modifications of flagellin in Campylobacter species. This gene is commonly observed in apparent operons with other genes responsible for the biosynthesis of pseudaminic acid and as a component of flagellar and exopolysaccharide biosynthesis loci.
Probab=99.32 E-value=1.9e-10 Score=103.81 Aligned_cols=208 Identities=18% Similarity=0.192 Sum_probs=132.3
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCe
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (422)
|||+|+|.++||. +|.++|++|+ |||.|+++.+.+++ +++|+|.+ +.+++.+...+ + +..
T Consensus 2 aiIpArG~Skr~~------~Knl~~l~Gk-pLi~~ti~~a~~s~~~d~IvVst--d~~~i~~~a~~-~--g~~------- 62 (222)
T TIGR03584 2 AIIPARGGSKRIP------RKNIKPFCGK-PMIAYSIEAALNSGLFDKVVVST--DDEEIAEVAKS-Y--GAS------- 62 (222)
T ss_pred EEEccCCCCCCCC------CccchhcCCc-CHHHHHHHHHHhCCCCCEEEEeC--CCHHHHHHHHH-c--CCE-------
Confidence 7999999999992 6999999999 99999999999986 67776655 34556555543 2 111
Q ss_pred EEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eee-cChHHHHHHHHHcCCcEEEEEeecC
Q 014564 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYR-MDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~-~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
+.+.-+..-.. ...++.++++.+...++.. ...+.|+++.||. +.. .++..+++.+.+.+++..+.+.+..
T Consensus 63 v~~~r~~~l~~-----d~~~~~~si~~~l~~l~~~--~~~d~v~~l~~tsPl~~~~~I~~~i~~~~~~~~ds~~sv~~~~ 135 (222)
T TIGR03584 63 VPFLRPKELAD-----DFTGTAPVVKHAIEELKLQ--KQYDHACCIYATAPFLQAKILKEAFELLKQPNAHFVFSVTSFA 135 (222)
T ss_pred eEEeChHHHcC-----CCCCchHHHHHHHHHHhhc--CCCCEEEEecCCCCcCCHHHHHHHHHHHHhCCCCEEEEeeccC
Confidence 11111110000 0137889999998877421 1147799999999 544 4488899988876677766665542
Q ss_pred CCCCcccCCceeeeccceeeeeeec------CCCCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCce
Q 014564 168 DSEKPKGKDLKAMAVDTTVLGLSKQ------EAEEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFL 241 (422)
Q Consensus 168 ~~~k~~~~~~~~~~~d~~v~~~~~k------~~~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i 241 (422)
. .|.. .+..+.+++...+... +.....+..+.++|+++++.+.. . ... -+.++
T Consensus 136 ~--~~~~--~~~~~~~g~~~~~~~~~~~~~rQd~~~~y~~nga~y~~~~~~~~~---~----~~~----------~~~~~ 194 (222)
T TIGR03584 136 F--PIQR--AFKLKENGGVEMFFPEHFNTRSQDLEEAYHDAGQFYWGKSQAWLE---S----GPI----------FSPHS 194 (222)
T ss_pred C--ChHH--heEECCCCcEEecCCCcccCCCCCCchheeeCCeEEEEEHHHHHh---c----CCc----------cCCCc
Confidence 1 1211 1233344444333211 11122456789999999987642 1 111 13556
Q ss_pred eEEEecc-eEeecCCHHHHHHHHHh
Q 014564 242 KAYLFND-YWEDIGTIRSFFEANLA 265 (422)
Q Consensus 242 ~~~~~~~-~~~di~t~~~~~~a~~~ 265 (422)
..|.++. ...|||+++|+..+...
T Consensus 195 ~~~~m~~~~~iDID~~~D~~~ae~l 219 (222)
T TIGR03584 195 IPIVLPRHLVQDIDTLEDWERAELL 219 (222)
T ss_pred EEEEeCccceeCCCCHHHHHHHHHH
Confidence 6676664 47999999999988653
No 104
>COG1211 IspD 4-diphosphocytidyl-2-methyl-D-erithritol synthase [Lipid metabolism]
Probab=99.30 E-value=2.8e-10 Score=101.15 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=131.6
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh-HHHHHHHHhhccCCCCcc
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS-ASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~-~~i~~~l~~~~~~~~~~~ 84 (422)
+++.+||||||.|+||.. ..||++++++|+ ||++|+|+.+..+ .|++|+|+++... +.+.++.... ..
T Consensus 3 ~~~~~vilAaG~G~R~~~---~~pKq~l~l~g~-pll~~tl~~f~~~~~i~~Ivvv~~~~~~~~~~~~~~~~--~~---- 72 (230)
T COG1211 3 MMVSAVILAAGFGSRMGN---PVPKQYLELGGR-PLLEHTLEAFLESPAIDEIVVVVSPEDDPYFEKLPKLS--AD---- 72 (230)
T ss_pred ceEEEEEEcCccccccCC---CCCceEEEECCE-EehHHHHHHHHhCcCCCeEEEEEChhhhHHHHHhhhhc--cC----
Confidence 457899999999999974 799999999999 9999999999887 6899999998744 3344443210 11
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCcEEEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
..++++..-. ...++++.+...+... ..+-||+..+=- ++..+ +..+++... +..+.+.
T Consensus 73 ---~~v~~v~GG~-----------~R~~SV~~gL~~~~~~---~~~~VlvHDaaRPf~~~~~i~~li~~~~--~~~aai~ 133 (230)
T COG1211 73 ---KRVEVVKGGA-----------TRQESVYNGLQALSKY---DSDWVLVHDAARPFLTPKLIKRLIELAD--KYGAAIL 133 (230)
T ss_pred ---CeEEEecCCc-----------cHHHHHHHHHHHhhcc---CCCEEEEeccccCCCCHHHHHHHHHhhc--cCCcEEE
Confidence 1244543221 4678899888888731 135666666654 44443 566663332 3344455
Q ss_pred EeecCCCCCcccCCceeeeccceeeeeeecCCCCCCceeee-eEEEEeHHHHHHHHhhhCCCCCccccchhhhhcccCce
Q 014564 163 CLPMDDSEKPKGKDLKAMAVDTTVLGLSKQEAEEKPYIASM-GVYLFKKEILLNLLRWRFPTANDFGSEIIPASANEQFL 241 (422)
Q Consensus 163 ~~~~~~~~k~~~~~~~~~~~d~~v~~~~~k~~~~~~~~~~~-Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~l~~~~~i 241 (422)
..+..+ ..+..+.++.+.+..... .++-. --..|+.+.|.+..+..+.....+..|.--....+.++
T Consensus 134 alpv~D-------Tik~~~~~~~i~~t~~R~-----~l~~~QTPQ~F~~~~L~~a~~~a~~~~~~~tDdas~~e~~G~~v 201 (230)
T COG1211 134 ALPVTD-------TLKRVDADGNIVETVDRS-----GLWAAQTPQAFRLELLKQALARAFAEGREITDDASAIEKAGGPV 201 (230)
T ss_pred EeeccC-------cEEEecCCCCeeeccChh-----hhhhhhCCccccHHHHHHHHHHHHhcCCCcCCHHHHHHHcCCCe
Confidence 555544 233334444555443221 11110 11245556565544433221212222211111126677
Q ss_pred eEEEecceEeecCCHHHHHHHHHhcc
Q 014564 242 KAYLFNDYWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 242 ~~~~~~~~~~di~t~~~~~~a~~~ll 267 (422)
..++-+.+-+.+.+|+|+..+...+.
T Consensus 202 ~lV~G~~~n~KiTtpeDL~~a~~il~ 227 (230)
T COG1211 202 SLVEGSADNFKITTPEDLEIAEAILR 227 (230)
T ss_pred EEEecCcceeEecCHHHHHHHHHHhc
Confidence 77776667789999999999987654
No 105
>COG1044 LpxD UDP-3-O-[3-hydroxymyristoyl]
Probab=99.30 E-value=1.6e-11 Score=113.00 Aligned_cols=50 Identities=28% Similarity=0.340 Sum_probs=33.6
Q ss_pred eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 370 ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 370 ~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+.+|++++.||+|+.|.. +.-++.+|++++.|... +-||+|+.||.+|.|
T Consensus 202 ~V~Igd~VeIGanT~Idr--ga~~dTvIg~~~kIdN~-vqIaHnv~IG~~~~I 251 (338)
T COG1044 202 RVIIGDDVEIGANTTIDR--GALDDTVIGEGVKIDNL-VQIGHNVRIGEHCII 251 (338)
T ss_pred eEEECCceEEcccceecc--ccccCceecCCcEEcce-eEEccccEECCCcEE
Confidence 466677777777777753 22234677777777655 457888888888864
No 106
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=99.26 E-value=1.5e-10 Score=112.53 Aligned_cols=110 Identities=12% Similarity=0.175 Sum_probs=76.3
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCccc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTF 85 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~ 85 (422)
++++.+||||||.|+||+ .+|+|+|+.|+ |||+|+++.+... +++++|+++....+ .+.. + +
T Consensus 172 ~~~i~~iILAGG~SsRmG-----~~K~ll~~~Gk-~ll~~~l~~l~~~-~~~vvV~~~~~~~~---~~~~-~----~--- 233 (369)
T PRK14490 172 EVPLSGLVLAGGRSSRMG-----SDKALLSYHES-NQLVHTAALLRPH-CQEVFISCRAEQAE---QYRS-F----G--- 233 (369)
T ss_pred cCCceEEEEcCCccccCC-----CCcEEEEECCc-cHHHHHHHHHHhh-CCEEEEEeCCchhh---HHhh-c----C---
Confidence 456789999999999996 59999999999 9999999999864 78888877544211 1111 1 1
Q ss_pred CCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHH
Q 014564 86 GDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQN 151 (422)
Q Consensus 86 ~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~ 151 (422)
+.++..... ..|...++..+..... .+.++++.||+ +...+ +..+++.
T Consensus 234 ----v~~i~d~~~--------~~Gpl~gi~~al~~~~------~~~~lv~~~DmP~i~~~~i~~L~~~ 283 (369)
T PRK14490 234 ----IPLITDSYL--------DIGPLGGLLSAQRHHP------DAAWLVVACDLPFLDEATLQQLVEG 283 (369)
T ss_pred ----CcEEeCCCC--------CCCcHHHHHHHHHhCC------CCcEEEEeCCcCCCCHHHHHHHHHh
Confidence 223322211 1366777877766544 37899999999 66655 4555554
No 107
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.25 E-value=6e-11 Score=106.09 Aligned_cols=63 Identities=33% Similarity=0.426 Sum_probs=46.6
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceecCCccC
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~~g~~i 422 (422)
+.||+++.+. ++.+++++.|++++.+.++..+.+...++++++|+.++++ ||++++|+++++|
T Consensus 115 ~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~ig~~~~v~~~~~ig~~~~i~~~s~v 183 (205)
T cd03352 115 TVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGSTTIGDNVIIGGQVGIAGHLTIGDGVVIGAGSGV 183 (205)
T ss_pred eEECCCCEECCceEEeCCCEECCCCEECCCCEEccccEECCCeEEcCCCEEeCCcEECCCCEEcCCCEE
Confidence 4566666666 3677777888888888777777778888888888888765 6777777777653
No 108
>PLN02296 carbonate dehydratase
Probab=99.24 E-value=4.9e-11 Score=109.58 Aligned_cols=111 Identities=20% Similarity=0.308 Sum_probs=69.1
Q ss_pred ccccCCCCCCceecCCcccccEEcCCCEEcc-cee----eeeEEcCCcEECCCCEEc----------ceEEECCccccch
Q 014564 282 IYTSRRNLPPSKIDDSKIVDSIISHGSFITS-SFI----EHSVVGIRSRINANVHLK----------DTMMLGADFYETD 346 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~v----~~s~ig~~~~i~~~~~i~----------~~~~~~~~~~~~~ 346 (422)
+.+.+.+.|++.+.+ ++.||++|.|.. +.+ ..+.||++|.|+++|.|+ ..+++|++
T Consensus 55 I~~~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~~~I~d~~vI~~~~~~~~g~~~~siIG~~----- 125 (269)
T PLN02296 55 VDKDAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSGTNIQDNSLVHVAKTNLSGKVLPTIIGDN----- 125 (269)
T ss_pred cCCCCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCCCEECCCCEEEeCCCcccCCCCCcEeCCC-----
Confidence 333444444444422 345555555542 222 235788888888888886 23455655
Q ss_pred hhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCcc
Q 014564 347 AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 421 (422)
+.|+++|.|.+|+||++|.||.++++..+ ..+++++.|+.|+++ .+++.|+++++
T Consensus 126 -------------v~IG~~avI~g~~Igd~v~IG~ga~I~~g------v~Ig~~a~IgagSvV-~~~~~I~~~~~ 180 (269)
T PLN02296 126 -------------VTIGHSAVLHGCTVEDEAFVGMGATLLDG------VVVEKHAMVAAGALV-RQNTRIPSGEV 180 (269)
T ss_pred -------------CEECCCceecCCEECCCcEECCCcEECCC------eEECCCCEECCCCEE-ecCCEeCCCeE
Confidence 88888888888889999999988888754 355556666666433 45555555543
No 109
>PRK05289 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.23 E-value=6.2e-11 Score=109.64 Aligned_cols=134 Identities=17% Similarity=0.174 Sum_probs=60.7
Q ss_pred cccccCCCCCCceecCCcccccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccc-hhh----HHh-hhc
Q 014564 281 PIYTSRRNLPPSKIDDSKIVDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYET-DAE----VAS-LLA 354 (422)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~-~~~----~~~-~~~ 354 (422)
.+++++.+.|.+.++. ++.|+++|.|++ ++.||++|.|++++.|.+.+.+|++.... .+. .+. .+.
T Consensus 4 ~I~p~a~I~~~a~Ig~----~v~Igp~~~I~~----~v~IG~~~~I~~~~~I~g~~~IG~~~~I~~~a~Ig~~~q~~~~~ 75 (262)
T PRK05289 4 KIHPTAIVEPGAKIGE----NVEIGPFCVIGP----NVVIGDGTVIGSHVVIDGHTTIGKNNRIFPFASIGEDPQDLKYK 75 (262)
T ss_pred ccCCCCEECCCCEECC----CCEECCCeEECC----CCEECCCCEECCCCEEcCccEECCCCEEcccceecCCceeeccc
Confidence 4455555555555522 455555555554 44555555555555554444444430000 000 000 001
Q ss_pred CCCcceEeCCCcEEe-eeEeCCC-------cEECCCeEEccCCCcccccccCCCeEEcCCeE-----EEcCCceecCCcc
Q 014564 355 EGRVPVGIGENTKIK-ECIIDKN-------ARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFV 421 (422)
Q Consensus 355 ~~~~~~~i~~~~~i~-~~~i~~~-------~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~ 421 (422)
+....+.||++|.|. ++.|... +.||+++.++.+..+...+.+++++.++.++. +||++++|+++++
T Consensus 76 g~~~~v~IG~~~~I~e~~~I~~~~~~~~~~t~IG~~~~I~~~~~I~h~~~IG~~v~i~~~~~i~g~v~Igd~~~Ig~~~~ 155 (262)
T PRK05289 76 GEPTRLVIGDNNTIREFVTINRGTVQGGGVTRIGDNNLLMAYVHVAHDCVVGNHVILANNATLAGHVEVGDYAIIGGLTA 155 (262)
T ss_pred CCCCeEEECCCCEECCCeEEecccccCCCeeEECCceEECCCCEECCeEEECCCeEECCccccccccccCCcEEEeecce
Confidence 111124555555554 2433322 34444444444444444555555555544432 3667777766665
Q ss_pred C
Q 014564 422 I 422 (422)
Q Consensus 422 i 422 (422)
|
T Consensus 156 i 156 (262)
T PRK05289 156 V 156 (262)
T ss_pred e
Confidence 3
No 110
>cd05636 LbH_G1P_TT_C_like Putative glucose-1-phosphate thymidylyltransferase, C-terminal Left-handed parallel beta-Helix (LbH) domain: Proteins in this family show simlarity to glucose-1-phosphate adenylyltransferases in that they contain N-terminal catalytic domains that resemble a dinucleotide-binding Rossmann fold and C-terminal LbH fold domains. Members in this family are predicted to be glucose-1-phosphate thymidylyltransferases, which are involved in the dTDP-L-rhamnose biosynthetic pathway. Glucose-1-phosphate thymidylyltransferase catalyzes the synthesis of deoxy-thymidine di-phosphate (dTDP)-L-rhamnose, an important component of the cell wall of many microorganisms. The C-terminal LbH domain contains multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.23 E-value=9e-11 Score=100.88 Aligned_cols=80 Identities=18% Similarity=0.349 Sum_probs=62.0
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
++.|++++.|.+ .++||++|+|++++.|++.++++++ +.|++++.|.+|++++++.|+
T Consensus 23 ~~~I~~~a~i~~----~v~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~siig~~~~I~ 80 (163)
T cd05636 23 GAIVRSGAYIEG----PVIIGKGCEIGPNAYIRGYTVLGDG------------------CVVGNSVEVKNSIIMDGTKVP 80 (163)
T ss_pred CCEECCCCEEeC----CeEECCCCEECCCCEEcCCCEECCC------------------CEECCCcEEeeeEecCCCEec
Confidence 355555555544 7899999999999999977677766 999999999999999999999
Q ss_pred CCeEEccCCCcccccccCCCeEE
Q 014564 381 KNVIIANSEGIQEADRSAEGFYI 403 (422)
Q Consensus 381 ~~~~i~~~~~~~~~~~~~~~~~i 403 (422)
.++.+.+ ..+...+.+++++.+
T Consensus 81 ~~~~i~~-siIg~~~~I~~~~~i 102 (163)
T cd05636 81 HLNYVGD-SVLGENVNLGAGTIT 102 (163)
T ss_pred cCCEEec-CEECCCCEECCCcEE
Confidence 9887754 445555666666555
No 111
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.22 E-value=1.3e-10 Score=99.77 Aligned_cols=95 Identities=15% Similarity=0.250 Sum_probs=58.7
Q ss_pred ccEEcCCCEEcc-ceee----eeEEcCCcEECCCCEEcceEE----------ECCccccchhhHHhhhcCCCcceEeCCC
Q 014564 301 DSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKDTMM----------LGADFYETDAEVASLLAEGRVPVGIGEN 365 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~----~s~ig~~~~i~~~~~i~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 365 (422)
++.||++|.|+. +.+. .+.||++|.|+++|.|.+++. +|++ +.+..+
T Consensus 17 ~v~IG~~~~I~~~a~I~~~~~~i~IG~~~~I~~~~~I~~~~~~~~~~~~~v~IG~~------------------~~i~~~ 78 (164)
T cd04646 17 DVTIGPGTVVHPRATIIAEAGPIIIGENNIIEEQVTIVNKKPKDPAEPKPMIIGSN------------------NVFEVG 78 (164)
T ss_pred ceEECCCCEEcCCeEEecCCCCeEECCCCEECCCcEEecCCCCCCCCCCCeEECCC------------------CEECCC
Confidence 455555555553 2231 368888888888888877643 4443 566667
Q ss_pred cEEeeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 366 TKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 366 ~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
+.+.+++||++|.||+++.+..+. .++++++|+.++++ .+++.|++++
T Consensus 79 ~~i~~~~IGd~~~Ig~~a~I~~gv------~Ig~~~~IgagsvV-~~~~~i~~~~ 126 (164)
T cd04646 79 CKCEALKIGNNNVFESKSFVGKNV------IITDGCIIGAGCKL-PSSEILPENT 126 (164)
T ss_pred cEEEeeEECCCCEEeCCCEECCCC------EECCCCEEeCCeEE-CCCcEECCCe
Confidence 777778888888888888887543 44555555555322 3444444433
No 112
>PRK12461 UDP-N-acetylglucosamine acyltransferase; Provisional
Probab=99.22 E-value=9.4e-11 Score=107.48 Aligned_cols=63 Identities=14% Similarity=0.317 Sum_probs=38.4
Q ss_pred eEeCCCcEEe-eeEeC------CCcEECCCeEEccCCCcccccccCCCeEEcCCeE-----EEcCCceecCCccC
Q 014564 360 VGIGENTKIK-ECIID------KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDGFVI 422 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~------~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g~~i 422 (422)
+.||+++.|. ++.|. ..+.||+++.+.++..+...+.++++++|+.++. +||++++|++++.|
T Consensus 78 v~IG~~~~I~e~vtI~~gt~~g~~t~IG~~~~i~~~~~I~hd~~IG~~v~i~~~~~i~g~v~Igd~a~Ig~~a~V 152 (255)
T PRK12461 78 LEIGDRNVIREGVTIHRGTKGGGVTRIGNDNLLMAYSHVAHDCQIGNNVILVNGALLAGHVTVGDRAIISGNCLV 152 (255)
T ss_pred eEECCceEECCccEEecCcccCCcEEEcccceeccCcEECCCCEECCCcEECCCCccCCceEECCCeEEeCCCEE
Confidence 5566666664 24443 3455566665555555566677777777765543 46777777777653
No 113
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.20 E-value=1.2e-10 Score=87.69 Aligned_cols=65 Identities=22% Similarity=0.496 Sum_probs=48.5
Q ss_pred EcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCC
Q 014564 304 ISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 382 (422)
Q Consensus 304 i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~ 382 (422)
|++++.|+. +.+.++.||++|.|+++++|+++++..+ +.|++++.|.+|++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~-------------------~~ig~~~~l~~svi~~~~~i~~~ 62 (81)
T cd04652 2 VGENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDN-------------------VTIEDGCTLENCIIGNGAVIGEK 62 (81)
T ss_pred ccCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeccEEeCCCEECCC
Confidence 344444442 3344688888888888888888776654 78888888888888888888888
Q ss_pred eEEcc
Q 014564 383 VIIAN 387 (422)
Q Consensus 383 ~~i~~ 387 (422)
+.+.+
T Consensus 63 ~~v~~ 67 (81)
T cd04652 63 CKLKD 67 (81)
T ss_pred CEEcc
Confidence 88864
No 114
>cd03353 LbH_GlmU_C N-acetyl-glucosamine-1-phosphate uridyltransferase (GlmU), C-terminal left-handed beta-helix (LbH) acetyltransferase domain: GlmU is also known as UDP-N-acetylglucosamine pyrophosphorylase. It is a bifunctional bacterial enzyme that catalyzes two consecutive steps in the formation of UDP-N-acetylglucosamine (UDP-GlcNAc), an important precursor in bacterial cell wall formation. The two enzymatic activities, uridyltransferase and acetyltransferase, are carried out by two independent domains. The C-terminal LbH domain possesses the acetyltransferase activity. It catalyzes the CoA-dependent acetylation of GlcN-1-phosphate to GlcNAc-1-phosphate. The LbH domain contains 10 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X. The acetyltransferase active site is located at the interface between two subunits of the active LbH trimer.
Probab=99.19 E-value=1.7e-10 Score=102.16 Aligned_cols=120 Identities=19% Similarity=0.235 Sum_probs=74.6
Q ss_pred CCCcccccCCCCCCceecCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCC
Q 014564 278 ATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 356 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 356 (422)
+...+.+.+.+.|.+.+.+ ++.||++|.|++ +.+.++.||++|.|++++.|+++.+. ++
T Consensus 14 ~~v~ig~~~~I~~~a~i~~----~~~Ig~~~~I~~~~~I~~~~Ig~~~~I~~~~~i~~~~ig-~~--------------- 73 (193)
T cd03353 14 GDVEIGVDVVIDPGVILEG----KTVIGEDCVIGPNCVIKDSTIGDGVVIKASSVIEGAVIG-NG--------------- 73 (193)
T ss_pred CCeEECCCcEECCCCEEeC----cCEECCCCEECCCcEEeCCEECCCCEEcCCeEEEeeEEC-CC---------------
Confidence 3333444444444444422 578888888874 56777899999999999999876554 43
Q ss_pred CcceEeCCCcEEe-eeEeCCCcEECCCeEEcc-----------CCCcccccccCCCeEEcCCe------------EEEcC
Q 014564 357 RVPVGIGENTKIK-ECIIDKNARIGKNVIIAN-----------SEGIQEADRSAEGFYIRSGV------------TVILK 412 (422)
Q Consensus 357 ~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-----------~~~~~~~~~~~~~~~i~~~~------------~~ig~ 412 (422)
+.|++++.|. ++++++++.|++++.+.+ ...+ ..+.+++++.|+.++ ++||+
T Consensus 74 ---~~Ig~~~~I~~~~~Ig~~~~Ig~~~~i~~s~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~vigd 149 (193)
T cd03353 74 ---ATVGPFAHLRPGTVLGEGVHIGNFVEIKKSTIGEGSKANHLSYL-GDAEIGEGVNIGAGTITCNYDGVNKHRTVIGD 149 (193)
T ss_pred ---CEECCccEEcCccEECCCCEECCcEEEecceEcCCCEeccccee-cccEECCCCEEcCceEEeccCCccccCCEECC
Confidence 6777777776 577777777666555432 1111 234555566655542 24677
Q ss_pred CceecCCcc
Q 014564 413 NSVITDGFV 421 (422)
Q Consensus 413 ~~~i~~g~~ 421 (422)
+++|+++++
T Consensus 150 ~~~ig~~~~ 158 (193)
T cd03353 150 NVFIGSNSQ 158 (193)
T ss_pred CeEEccCCE
Confidence 777776654
No 115
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.19 E-value=1.6e-10 Score=101.26 Aligned_cols=95 Identities=14% Similarity=0.333 Sum_probs=63.0
Q ss_pred ccEEcCCCEEcc-ceee----eeEEcCCcEECCCCEEcc----eEEECCccccchhhHHhhhcCCCcceEeCCCcEEeee
Q 014564 301 DSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 371 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~----~s~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 371 (422)
++.||++|.|+. +.+. ..+||++|.|+++|.|+. .++++++ +.|++++.|.+|
T Consensus 26 ~V~IG~~~~I~~~a~I~gd~g~i~Ig~~t~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~I~~s 87 (192)
T TIGR02287 26 DVILGKRCYVGPLASLRGDFGRIVLKEGANIQDNCVMHGFPGQDTVVEEN------------------GHVGHGAILHGC 87 (192)
T ss_pred eEEECCCCEECCCcEEEccCCceEECCCCEECCCeEEeccCCCCCeECCC------------------CEECCCCEEcCC
Confidence 456666666653 2332 468888999999998842 2344444 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 372 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 372 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
+|+++|.||.++++.++ ..+++++.|+.++ ++.+++.|++++
T Consensus 88 iIg~~~~IG~ga~I~~g------~~IG~~s~Vgags-~V~~~~~ip~~~ 129 (192)
T TIGR02287 88 IVGRNALVGMNAVVMDG------AVIGENSIVAASA-FVKAGAEMPAQY 129 (192)
T ss_pred EECCCCEECCCcccCCC------eEECCCCEEcCCC-EECCCCEECCCe
Confidence 99999999999888764 3355555555553 224445554443
No 116
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.19 E-value=1.6e-10 Score=97.20 Aligned_cols=29 Identities=28% Similarity=0.533 Sum_probs=22.4
Q ss_pred eEeCCCcEEeeeEeCCCcEECCCeEEccC
Q 014564 360 VGIGENTKIKECIIDKNARIGKNVIIANS 388 (422)
Q Consensus 360 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 388 (422)
++|||++.|..|.|+++|.||.|+++.++
T Consensus 79 vtIGH~aivHGc~Ig~~~lIGmgA~vldg 107 (176)
T COG0663 79 VTIGHGAVVHGCTIGDNVLIGMGATVLDG 107 (176)
T ss_pred cEEcCccEEEEeEECCCcEEecCceEeCC
Confidence 77777777777888888888888777764
No 117
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=99.17 E-value=2.2e-10 Score=100.72 Aligned_cols=95 Identities=17% Similarity=0.277 Sum_probs=61.6
Q ss_pred ccEEcCCCEEcc-ceee----eeEEcCCcEECCCCEEcce----EEECCccccchhhHHhhhcCCCcceEeCCCcEEeee
Q 014564 301 DSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 371 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~----~s~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 371 (422)
++.||++|.|+. +.+. ..+||.+|.|+++|.|+.. ++++++ +.||+++.+.+|
T Consensus 28 ~V~IG~~~~I~~~avIrgd~~~i~Ig~~~~Ig~~~~I~~~~~~~siIg~~------------------~~Ig~~a~i~g~ 89 (196)
T PRK13627 28 DVIVGAGVYIGPLASLRGDYGRLIVQAGANLQDGCIMHGYCDTDTIVGEN------------------GHIGHGAILHGC 89 (196)
T ss_pred ceEECCCCEECCCCEEecCCccEEECCCCEECCCCEEeCCCCCCCEECCC------------------CEECCCcEEeeE
Confidence 345555555553 2221 2577888888888888553 344444 889999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 372 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 372 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
+||++|.||.++++.++ ..+++++.|+.|++| -++..+++++
T Consensus 90 vIG~~v~IG~ga~V~~g------~~IG~~s~Vgags~V-~~~~~ip~~~ 131 (196)
T PRK13627 90 VIGRDALVGMNSVIMDG------AVIGEESIVAAMSFV-KAGFQGEKRQ 131 (196)
T ss_pred EECCCCEECcCCccCCC------cEECCCCEEcCCCEE-eCCcCcCCCc
Confidence 99999999999888753 345566666666544 3444444443
No 118
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.17 E-value=1.7e-10 Score=104.47 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCcccccCCCCCCceecCCccc-ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCC
Q 014564 278 ATKPIYTSRRNLPPSKIDDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEG 356 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~ 356 (422)
|.+.+.+.+.+++++.+....+. +++||++|.|.. ++.||.+|+||++|.|..++.++.. .++ -.
T Consensus 105 p~a~i~~ga~Ig~~vvI~p~~Vniga~IGeGt~I~~----~a~IG~~v~IG~nv~I~~g~~IgG~-~ep---------~~ 170 (269)
T TIGR00965 105 PGAAVRQGAFIAKNVVLMPSYVNIGAYVDEGTMVDT----WATVGSCAQIGKNVHLSGGVGIGGV-LEP---------LQ 170 (269)
T ss_pred CCcEECCCcEECCCCEEeeeEEcCCcEECCCCEECC----CcEECCCCEECCCCEEcCCcccCCC-ccc---------CC
Confidence 33444444444444444221221 345556665554 5566666666666666555555421 000 00
Q ss_pred CcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccc
Q 014564 357 RVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEA 394 (422)
Q Consensus 357 ~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~ 394 (422)
..++.||++|+|. +|.|.+++.||++++|+.+..+...
T Consensus 171 ~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 171 ANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 0115555555554 4555555555555555544433333
No 119
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=99.16 E-value=3.2e-10 Score=108.31 Aligned_cols=109 Identities=10% Similarity=0.127 Sum_probs=77.9
Q ss_pred ceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCC
Q 014564 8 TVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGD 87 (422)
Q Consensus 8 ~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~ 87 (422)
++.+||||||.|+||+ .+|+|+|+.|+ ||++|+++.|... +++++|+++... . .+.. + ..
T Consensus 160 ~i~~IILAGGkSsRMG-----~dKaLL~~~Gk-pLl~~~ie~l~~~-~~~ViVv~~~~~--~-~~~~----~-~~----- 219 (346)
T PRK14500 160 PLYGLVLTGGKSRRMG-----KDKALLNYQGQ-PHAQYLYDLLAKY-CEQVFLSARPSQ--W-QGTP----L-EN----- 219 (346)
T ss_pred CceEEEEeccccccCC-----CCcccceeCCc-cHHHHHHHHHHhh-CCEEEEEeCchH--h-hhcc----c-cC-----
Confidence 5789999999999996 69999999999 9999999888764 889988875321 1 1100 0 01
Q ss_pred CeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHH
Q 014564 88 GCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNH 152 (422)
Q Consensus 88 ~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~ 152 (422)
+.++..... ..|...+|+.++.... .+.+++++||+ +...+ +..+++.+
T Consensus 220 --v~~I~D~~~--------~~GPlagI~aaL~~~~------~~~~lVl~cDmP~l~~~~l~~L~~~~ 270 (346)
T PRK14500 220 --LPTLPDRGE--------SVGPISGILTALQSYP------GVNWLVVACDLAYLNSETVEKLLAHY 270 (346)
T ss_pred --CeEEeCCCC--------CCChHHHHHHHHHhCC------CCCEEEEECCcCCCCHHHHHHHHHhh
Confidence 223222211 2489999999988654 36889999999 56555 56666655
No 120
>TIGR01853 lipid_A_lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase. This model describes LpxD, an enzyme for the biosynthesis of lipid A, a component oflipopolysaccharide (LPS) in the outer membrane outer leaflet of most Gram-negative bacteria. Some differences are found between lipid A of different species. This protein represents the third step from UDP-N-acetyl-D-glucosamine. The group added at this step generally is 14:0(3-OH) (myristate) but may vary; in Aquifex it appears to be 16:0(3-OH) (palmitate).
Probab=99.14 E-value=3e-10 Score=107.98 Aligned_cols=153 Identities=24% Similarity=0.217 Sum_probs=102.2
Q ss_pred eEeecCCHHHHHHHHHhccCCCC-CccccCCCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEcc-cee-eeeEEcCC
Q 014564 249 YWEDIGTIRSFFEANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITS-SFI-EHSVVGIR 323 (422)
Q Consensus 249 ~~~di~t~~~~~~a~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v-~~s~ig~~ 323 (422)
.+.-+++|...+..-..++.+.+ ....++|++.+++++.+++++.+ .++.+. ++.||++|.|+. +.+ .++.||++
T Consensus 66 ~~~~v~~p~~~~~~~~~~~~~~~~~~~~i~p~a~i~~~a~Ig~~v~I~~~~~I~~~v~IG~~~~I~~~~~Ig~~~~IG~~ 145 (324)
T TIGR01853 66 AALVVKDPYLAFAKVAELFDPPPKREAGIHPTAVVDPSAKIGDGVTIGPNVVIGAGVEIGENVIIGPGVVIGDDVVIGDG 145 (324)
T ss_pred eEEEECCHHHHHHHHHHHhcccccccCCcCCCCEeCCCcEECCCCEECCCcEEccCcEECCcEEECCCCEECCcceeCCC
Confidence 35667888776655555553322 23456777777777777776666 344443 466666666653 233 36777777
Q ss_pred cEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe---------------------eeEeCCCcEECCC
Q 014564 324 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK---------------------ECIIDKNARIGKN 382 (422)
Q Consensus 324 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~---------------------~~~i~~~~~i~~~ 382 (422)
|.|++++.|.+.+++|++ |.|+++|.|. +++||++|.||+|
T Consensus 146 ~~I~~~~~I~~~~~IG~~------------------~~I~~~~vIg~~gfg~~~~~~~~~~~i~~~G~vvIgd~v~IGa~ 207 (324)
T TIGR01853 146 SRIHPNVVIYERVQLGKN------------------VIIHSGAVIGSDGFGYAHTANGGHVKIPQIGRVIIEDDVEIGAN 207 (324)
T ss_pred ceECCCcEECCCCEECCC------------------CEECCCcEECCCCccceeccCCcceecCccceEEECCCcEECCC
Confidence 777777777766666665 7777777773 4788888888888
Q ss_pred eEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 383 VIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 383 ~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+.+.... -+..++++++.|+..+ .|++++.||.+++|
T Consensus 208 ~~I~r~~--~~~t~Ig~~~~I~n~v-~I~~~v~IG~~~~I 244 (324)
T TIGR01853 208 TTIDRGA--FDDTIIGEGTKIDNLV-QIAHNCRIGENCII 244 (324)
T ss_pred CEEecCC--cCcceecCCcEEccCc-EECCCCEECCCcEE
Confidence 8886533 2456888999998885 56888888887754
No 121
>PLN02472 uncharacterized protein
Probab=99.14 E-value=3.7e-10 Score=102.43 Aligned_cols=110 Identities=16% Similarity=0.280 Sum_probs=68.6
Q ss_pred ccccCCCCCCceecCCcccccEEcCCCEEccc-ee----eeeEEcCCcEECCCCEEcc----------eEEECCccccch
Q 014564 282 IYTSRRNLPPSKIDDSKIVDSIISHGSFITSS-FI----EHSVVGIRSRINANVHLKD----------TMMLGADFYETD 346 (422)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~-~v----~~s~ig~~~~i~~~~~i~~----------~~~~~~~~~~~~ 346 (422)
+...+.+.+++.+.+ ++.||++|.|... .+ ....||.+|.|+++|.|+. .++++++
T Consensus 62 i~~~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~t~Ig~~~vI~~~~~~~~~i~~~tvIG~~----- 132 (246)
T PLN02472 62 VAVDAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFCSNVQERCVLHAAWNSPTGLPAETLIDRY----- 132 (246)
T ss_pred cCCCCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCCCEECCCCEEeecCccccCCCCCcEECCC-----
Confidence 334444444444422 3455555555532 22 1357888888888888852 3555665
Q ss_pred hhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 347 AEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 347 ~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
+.||++|.|.+|+|+++|.||.++++.++. ++++++.|+.++ ++.++..|++|.
T Consensus 133 -------------v~IG~~s~L~~~~Igd~v~IG~~svI~~ga------vIg~~~~Ig~gs-vV~~g~~Ip~g~ 186 (246)
T PLN02472 133 -------------VTIGAYSLLRSCTIEPECIIGQHSILMEGS------LVETHSILEAGS-VLPPGRRIPTGE 186 (246)
T ss_pred -------------CEECCCcEECCeEEcCCCEECCCCEECCCC------EECCCCEECCCC-EECCCCEeCCCC
Confidence 899999999999999999999999888643 444555555553 334555555544
No 122
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.14 E-value=3.4e-10 Score=96.34 Aligned_cols=95 Identities=19% Similarity=0.310 Sum_probs=64.6
Q ss_pred ccEEcCCCEEcc-ceee----eeEEcCCcEECCCCEEcc----eEEECCccccchhhHHhhhcCCCcceEeCCCcEEeee
Q 014564 301 DSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKD----TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 371 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~----~s~ig~~~~i~~~~~i~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 371 (422)
++.||++|.|+. +.+. .+.||++|.|+++|.|+. .++++++ +.|++++.+.++
T Consensus 18 ~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~Ig~~~~i~~~ 79 (155)
T cd04745 18 DVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEEN------------------GHIGHGAILHGC 79 (155)
T ss_pred cEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCC------------------CEECCCcEEECC
Confidence 456666666663 3333 378999999999999932 2344444 899999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 372 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 372 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
+||++|.||+++++.++ ..++++++|+.++. +.++..|++++
T Consensus 80 ~Ig~~~~Ig~~~~I~~g------~~Ig~~~~Ig~~s~-v~~~~~i~~~~ 121 (155)
T cd04745 80 TIGRNALVGMNAVVMDG------AVIGEESIVGAMAF-VKAGTVIPPRS 121 (155)
T ss_pred EECCCCEECCCCEEeCC------CEECCCCEECCCCE-eCCCCEeCCCC
Confidence 99999999999988764 34555555555542 23444454444
No 123
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=99.14 E-value=2.2e-10 Score=104.71 Aligned_cols=32 Identities=13% Similarity=0.088 Sum_probs=15.6
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGI 391 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~ 391 (422)
+.||++|.|. +|.|.+++.||++++++.+..+
T Consensus 177 viIgDnv~IGa~s~I~~Gv~IGdgavIgag~vV 209 (272)
T PRK11830 177 VIIEDNCFIGARSEVVEGVIVEEGSVLGMGVFL 209 (272)
T ss_pred eEEcCCCEECCCCEEcCCCEECCCCEEcCCCEE
Confidence 4555555554 3445444555555444444333
No 124
>cd04745 LbH_paaY_like paaY-like: This group is composed by uncharacterized proteins with similarity to the protein product of the E. coli paaY gene, which is part of the paa gene cluster responsible for phenylacetic acid degradation. Proteins in this group are expected to adopt the left-handed parallel beta-helix (LbH) structure. They contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Similarity to gamma carbonic anhydrase and Ferripyochelin Binding Protein (FBP) may suggest metal binding capacity.
Probab=99.14 E-value=5e-10 Score=95.36 Aligned_cols=94 Identities=15% Similarity=0.246 Sum_probs=53.8
Q ss_pred ccCCCCcccccCCCCCCcee-cCCccc----ccEEcCCCEEcc-cee-----eeeEEcCCcEECCCCEEcceEEECCccc
Q 014564 275 FYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFITS-SFI-----EHSVVGIRSRINANVHLKDTMMLGADFY 343 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~i~~~~~i~~-~~v-----~~s~ig~~~~i~~~~~i~~~~~~~~~~~ 343 (422)
++++++.+.+.+.+++.+.+ .++.+. ++.||++|.|++ +.+ .+|.||+++.|++++.+.++.+ |++
T Consensus 8 ~i~~~a~i~g~v~IG~~~~I~~~~~i~~~~~~i~IG~~~~Ig~~~~I~~~~~~~~~Ig~~~~Ig~~~~i~~~~I-g~~-- 84 (155)
T cd04745 8 FVHPTAVLIGDVIIGKNCYIGPHASLRGDFGRIVIRDGANVQDNCVIHGFPGQDTVLEENGHIGHGAILHGCTI-GRN-- 84 (155)
T ss_pred EECCCCEEEccEEECCCCEECCCcEEeCCCCcEEECCCCEECCCCEEeecCCCCeEEcCCCEECCCcEEECCEE-CCC--
Confidence 34455555555555666655 444443 256777777774 344 3466666666666666655433 333
Q ss_pred cchhhHHhhhcCCCcceEeCCCcEEee-eEeCCCcEECCCeEEcc
Q 014564 344 ETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARIGKNVIIAN 387 (422)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~i~~~~~i~~~~~i~~ 387 (422)
+.|+.++.|.+ ++|+++|.|++++.+..
T Consensus 85 ----------------~~Ig~~~~I~~g~~Ig~~~~Ig~~s~v~~ 113 (155)
T cd04745 85 ----------------ALVGMNAVVMDGAVIGEESIVGAMAFVKA 113 (155)
T ss_pred ----------------CEECCCCEEeCCCEECCCCEECCCCEeCC
Confidence 66666666653 66666666666665543
No 125
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=99.14 E-value=2.5e-10 Score=101.20 Aligned_cols=63 Identities=19% Similarity=0.207 Sum_probs=40.4
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
+..|+++|.|. ++.||++++|+++|+|+++.+ |++ +.|+++|.+.+++||++|.|+
T Consensus 8 ~~~I~~~a~i~-----~~~IG~~~~Ig~~a~I~~s~I-G~~------------------s~I~~~~~i~~~~IG~~~~I~ 63 (204)
T TIGR03308 8 EPTLHPTAELT-----ESKLGRYTEIGERTRLREVAL-GDY------------------SYVMRDCDIIYTTIGKFCSIA 63 (204)
T ss_pred CCeECCCcEEe-----ccEeCCCcEECCCcEEeCCEE-CCC------------------CEECCCcEEeeeEECCCCEEC
Confidence 34555555553 456777777777777776554 333 677777777777777777777
Q ss_pred CCeEEcc
Q 014564 381 KNVIIAN 387 (422)
Q Consensus 381 ~~~~i~~ 387 (422)
+++.+.+
T Consensus 64 ~~v~I~~ 70 (204)
T TIGR03308 64 AMVRINA 70 (204)
T ss_pred CCCEECC
Confidence 7776654
No 126
>TIGR01173 glmU UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase. This protein is a bifunctional enzyme, GlmU, which catalyzes last two reactions in the four-step pathway of UDP-N-acetylglucosamine biosynthesis from fructose-6-phosphate. Its reaction product is required from peptidoglycan biosynthesis, LPS biosynthesis in species with LPS, and certain other processes.
Probab=99.12 E-value=2.2e-10 Score=115.07 Aligned_cols=115 Identities=17% Similarity=0.198 Sum_probs=70.5
Q ss_pred CCCCcee-cCCccc-ccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCC
Q 014564 288 NLPPSKI-DDSKIV-DSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 364 (422)
Q Consensus 288 ~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 364 (422)
+++++.+ .++.+. ++.||++|.|+. +.+.++.||++|+|+++|.|+++.+..+ +.||+
T Consensus 264 ig~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~~Ig~ 324 (451)
T TIGR01173 264 IGRDVEIDPNVILEGKVKIGDDVVIGPGCVIKNSVIGSNVVIKAYSVLEGSEIGEG-------------------CDVGP 324 (451)
T ss_pred ECCCCEEcCCeEEeCceEECCCCEECCCcEEeeeEecCCCEEeeecEEecccccCC-------------------cEECC
Confidence 3444444 334443 477777777773 5556778888888888877777655433 67777
Q ss_pred CcEEe-eeEeCCCcEECCCeEEcc-----------CCCcccccccCCCeEEcCCe------------EEEcCCceecCCc
Q 014564 365 NTKIK-ECIIDKNARIGKNVIIAN-----------SEGIQEADRSAEGFYIRSGV------------TVILKNSVITDGF 420 (422)
Q Consensus 365 ~~~i~-~~~i~~~~~i~~~~~i~~-----------~~~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~ 420 (422)
++.|. +++|+++|.|++++.+.+ ...+ +.+.|++++.|+.++ ++||++++||.++
T Consensus 325 ~~~i~~~~~i~~~~~Ig~~~~i~~~~ig~~~~i~~~~~i-~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~ 403 (451)
T TIGR01173 325 FARLRPGSVLGAGVHIGNFVETKNARIGKGSKAGHLSYL-GDAEIGSNVNIGAGTITCNYDGANKHKTIIGDGVFIGSNT 403 (451)
T ss_pred eeEECCCCEECCCcEEccceeecCcEECCCcEecceeeE-eeeEEcCCcEECCCeEEeCcccccCCCCEECCCcEECCCC
Confidence 77776 466666666666544332 1111 235667777776653 3577888888776
Q ss_pred cC
Q 014564 421 VI 422 (422)
Q Consensus 421 ~i 422 (422)
+|
T Consensus 404 ~i 405 (451)
T TIGR01173 404 QL 405 (451)
T ss_pred EE
Confidence 53
No 127
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.12 E-value=5.7e-10 Score=96.17 Aligned_cols=55 Identities=20% Similarity=0.278 Sum_probs=27.0
Q ss_pred eEeCCCcEEee-eEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeE----EEcCCceecCCcc
Q 014564 360 VGIGENTKIKE-CIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVT----VILKNSVITDGFV 421 (422)
Q Consensus 360 ~~i~~~~~i~~-~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~----~ig~~~~i~~g~~ 421 (422)
+.|++++.|.. ++||++|.||.++.+.+ ..++++++|+.++. .|++++.++++++
T Consensus 71 ~~I~~~~~i~g~~~Ig~~~~Ig~~~~I~~-------~~Ig~~~~Ig~~s~i~~~~i~~~~~v~~~~~ 130 (167)
T cd00710 71 VSIAHGAIVHGPAYIGDNCFIGFRSVVFN-------AKVGDNCVIGHNAVVDGVEIPPGRYVPAGAV 130 (167)
T ss_pred ceECCCCEEeCCEEECCCCEECCCCEEEC-------CEECCCCEEcCCCEEeCCEeCCCCEECCCCE
Confidence 55555555553 66666666666655532 23333333333322 2455555555544
No 128
>COG0663 PaaY Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily [General function prediction only]
Probab=99.11 E-value=3.5e-10 Score=95.15 Aligned_cols=108 Identities=16% Similarity=0.176 Sum_probs=66.4
Q ss_pred ccccCCCCcccccCCCCCCcee-cCCccc----ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchh
Q 014564 273 FSFYDATKPIYTSRRNLPPSKI-DDSKIV----DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDA 347 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~ 347 (422)
..+++|++.+..+++++..+++ .++.++ +..||++|.|++.++.|+.-+.-++||+++.|++.+++..
T Consensus 17 ~a~Va~~A~viGdV~Ig~~vsIw~~aVlRgD~~~I~IG~~tNIQDg~ViH~~~~~p~~IG~~vtIGH~aivHG------- 89 (176)
T COG0663 17 TAFVAPSATVIGDVRIGAGVSIWPGAVLRGDVEPIRIGARTNIQDGVVIHADPGYPVTIGDDVTIGHGAVVHG------- 89 (176)
T ss_pred ceEECCCCEEEEeEEECCCCEECCceEEEccCCceEECCCceecCCeEEecCCCCCeEECCCcEEcCccEEEE-------
Confidence 4577888888888888888887 555553 5788888888876665554445555555555555555544
Q ss_pred hHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCC
Q 014564 348 EVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAE 399 (422)
Q Consensus 348 ~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~ 399 (422)
|+||++|.|. +++|.++|+||++++++.++.+...+++.+
T Consensus 90 ------------c~Ig~~~lIGmgA~vldga~IG~~~iVgAgalV~~~k~~p~ 130 (176)
T COG0663 90 ------------CTIGDNVLIGMGATVLDGAVIGDGSIVGAGALVTPGKEIPG 130 (176)
T ss_pred ------------eEECCCcEEecCceEeCCcEECCCcEEccCCcccCCcCCCC
Confidence 5555555555 455555555555555555444444444433
No 129
>cd04652 LbH_eIF2B_gamma_C eIF-2B gamma subunit, C-terminal Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B gamma subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH domain with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.11 E-value=4.9e-10 Score=84.26 Aligned_cols=76 Identities=20% Similarity=0.327 Sum_probs=64.6
Q ss_pred CCCcee-cCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCc
Q 014564 289 LPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 366 (422)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 366 (422)
++.+.+ .++.+.++.|+++|.|+ ++.+.+++|++++.|++++.|.++++.++ +.|++++
T Consensus 3 g~~~~I~~~~~i~~~~Ig~~~~I~~~~~i~~s~i~~~~~ig~~~~l~~svi~~~-------------------~~i~~~~ 63 (81)
T cd04652 3 GENTQVGEKTSIKRSVIGANCKIGKRVKITNCVIMDNVTIEDGCTLENCIIGNG-------------------AVIGEKC 63 (81)
T ss_pred cCCCEECCCCEEeCcEECCCCEECCCCEEeCcEEeCCCEECCCCEEeccEEeCC-------------------CEECCCC
Confidence 344555 45566678999999998 46788999999999999999999888766 8999999
Q ss_pred EEeeeEeCCCcEECCCe
Q 014564 367 KIKECIIDKNARIGKNV 383 (422)
Q Consensus 367 ~i~~~~i~~~~~i~~~~ 383 (422)
.+.+|++|+++.|++++
T Consensus 64 ~v~~~ii~~~~~i~~~~ 80 (81)
T cd04652 64 KLKDCLVGSGYRVEAGT 80 (81)
T ss_pred EEccCEECCCcEeCCCC
Confidence 99999999999999875
No 130
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.11 E-value=6.2e-10 Score=94.45 Aligned_cols=83 Identities=20% Similarity=0.330 Sum_probs=56.3
Q ss_pred ccEEcCCCEEcc-ceeee----eEEcCCcEECCCCEEcce----EEECCccccchhhHHhhhcCCCcceEeCCCcEEeee
Q 014564 301 DSIISHGSFITS-SFIEH----SVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 371 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~~----s~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 371 (422)
++.||++|.|+. +.+.. ..||++|.|+++|.|... ++++++ +.|++++.+.++
T Consensus 18 ~v~iG~~~~I~~~a~I~~~~~~i~Ig~~~~Ig~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 79 (154)
T cd04650 18 DVVIGELTSVWHYAVIRGDNDSIYIGKYSNVQENVSIHTDHGYPTEIGDY------------------VTIGHNAVVHGA 79 (154)
T ss_pred eEEECCCCEEcCCeEEEcCCCcEEECCCCEECCCCEEEeCCCCCeEECCC------------------CEECCCcEEECc
Confidence 345555555553 22322 488888888888888763 555655 888888888888
Q ss_pred EeCCCcEECCCeEEccCCCcccccccCCCeEEcCCe
Q 014564 372 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGV 407 (422)
Q Consensus 372 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~ 407 (422)
+||++|.|++++.+.+.. .++++++++.++
T Consensus 80 ~Ig~~~~Ig~~~~i~~~~------~Ig~~~~vg~~~ 109 (154)
T cd04650 80 KVGNYVIVGMGAILLNGA------KIGDHVIIGAGA 109 (154)
T ss_pred EECCCCEEcCCCEEeCCC------EECCCCEECCCC
Confidence 888888888888886543 445555555443
No 131
>cd03352 LbH_LpxD UDP-3-O-acyl-glucosamine N-acyltransferase (LpxD): The enzyme catalyzes the transfer of 3-hydroxymyristic acid or 3-hydroxy-arachidic acid, depending on the organism, from the acyl carrier protein (ACP) to UDP-3-O-acyl-glucosamine to produce UDP-2,3-diacyl-GlcNAc. This constitutes the third step in the lipid A biosynthetic pathway in Gram-negative bacteria. LpxD is a homotrimer, with each subunit consisting of a novel combination of an N-terminal uridine-binding domain, a core lipid-binding left-handed parallel beta helix (LbH) domain, and a C-terminal alpha-helical extension. The LbH domain contains 9 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=99.09 E-value=9.4e-10 Score=98.36 Aligned_cols=142 Identities=20% Similarity=0.146 Sum_probs=64.6
Q ss_pred cCCCCcccccCCCCCCcee-cCCcc-cccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhh
Q 014564 276 YDATKPIYTSRRNLPPSKI-DDSKI-VDSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 353 (422)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 353 (422)
+.+.+.+.+.+.+++.+.+ .++.+ .++.|+++|.|+. ++.|+.+++|++++.|.+++.++..............
T Consensus 10 i~~~~~i~~~~~ig~~~~i~~~~~i~~~~~Ig~~~~i~~----~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~~~~~~~~~ 85 (205)
T cd03352 10 IGPNAVIGEGVVIGDGVVIGPGVVIGDGVVIGDDCVIHP----NVTIYEGCIIGDRVIIHSGAVIGSDGFGFAPDGGGWV 85 (205)
T ss_pred ECCCCEECCCCEECCCCEECCCCEECCCCEECCCCEECC----CCEEcCCCEECCCcEECCCCEEcCCCceeEecCCcEE
Confidence 3444444444555555544 23444 2566666666664 4444444444444444444433321000000000000
Q ss_pred c-CCCcc------eEeCCCcEEe-----eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCcc
Q 014564 354 A-EGRVP------VGIGENTKIK-----ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 354 ~-~~~~~------~~i~~~~~i~-----~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 421 (422)
. ..... +.|++++.+. ++.|++++.|++++.+.+...+...+.++.++.+..+ +.||++++|+++++
T Consensus 86 ~~~~~~~v~Ig~~~~Ig~~~~i~~~~~~~~~Ig~~~~i~~~v~I~~~~~ig~~~~i~~~~~i~~~-~~Ig~~~~ig~~~~ 164 (205)
T cd03352 86 KIPQLGGVIIGDDVEIGANTTIDRGALGDTVIGDGTKIDNLVQIAHNVRIGENCLIAAQVGIAGS-TTIGDNVIIGGQVG 164 (205)
T ss_pred EcCCcceEEECCCEEECCCCEEeccccCCeEECCCCEECCceEEeCCCEECCCCEECCCCEEccc-cEECCCeEEcCCCE
Confidence 0 00001 4444444442 3455666666666666554444444445444444444 34677777777765
Q ss_pred C
Q 014564 422 I 422 (422)
Q Consensus 422 i 422 (422)
|
T Consensus 165 v 165 (205)
T cd03352 165 I 165 (205)
T ss_pred E
Confidence 4
No 132
>PRK14358 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.09 E-value=7.1e-10 Score=111.90 Aligned_cols=102 Identities=16% Similarity=0.204 Sum_probs=68.6
Q ss_pred ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcE
Q 014564 301 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~ 378 (422)
++.||++|.|+ .+.+.+|+||++|.|+++++|.++. +|.+ +.|++++.+. +++||++|.
T Consensus 288 ~v~Ig~~~~I~~~~~i~~svI~~~~~I~~~~~i~~~~-ig~~------------------~~ig~~~~i~~~~~Ig~~~~ 348 (481)
T PRK14358 288 QTRVADGVTIGAYSVVTDSVLHEGAVIKPHSVLEGAE-VGAG------------------SDVGPFARLRPGTVLGEGVH 348 (481)
T ss_pred CcEECCCCEECCCCEEeeeEECCCCEEeecceecCCe-EeCc------------------eEECCccEEcCCcEECCCCE
Confidence 46677888887 4666788888888888888887654 4444 7888888886 688888888
Q ss_pred ECCCeEEccC-----CCc-----ccccccCCCeEEcCCe------------EEEcCCceecCCcc
Q 014564 379 IGKNVIIANS-----EGI-----QEADRSAEGFYIRSGV------------TVILKNSVITDGFV 421 (422)
Q Consensus 379 i~~~~~i~~~-----~~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~ 421 (422)
|++++.+.+. ..+ -+.+.+++++.|+.++ ++||++++||++++
T Consensus 349 Ig~~~~i~~~~i~~~~~ig~~~~~~~~~ig~~~~ig~~~~i~~~~~~~~~~~~Ig~~~~ig~~~~ 413 (481)
T PRK14358 349 IGNFVETKNARLDAGVKAGHLAYLGDVTIGAETNVGAGTIVANFDGVNKHQSKVGAGVFIGSNTT 413 (481)
T ss_pred ECCCEEECCceecCCcccCceEEECCeEEcCCceEcCCEEEeCCCCccCCCCEECCCeEEcCCCE
Confidence 8886665432 111 1224556666665554 24677777777764
No 133
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=99.08 E-value=1.3e-09 Score=92.60 Aligned_cols=94 Identities=24% Similarity=0.404 Sum_probs=63.9
Q ss_pred ccEEcCCCEEcc-ceee----eeEEcCCcEECCCCEEcce----EEECCccccchhhHHhhhcCCCcceEeCCCcEEeee
Q 014564 301 DSIISHGSFITS-SFIE----HSVVGIRSRINANVHLKDT----MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKEC 371 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~----~s~ig~~~~i~~~~~i~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~ 371 (422)
++.||++|.|++ +.+. .++||++|.|+++|.|..+ ++++++ +.|+.+|.+.++
T Consensus 17 ~v~ig~~~~I~~~~~I~~~~~~~~IG~~~~I~~~~~I~~~~~~~~~Ig~~------------------~~I~~~~~i~~~ 78 (153)
T cd04645 17 DVTLGEGSSVWFGAVLRGDVNPIRIGERTNIQDGSVLHVDPGYPTIIGDN------------------VTVGHGAVLHGC 78 (153)
T ss_pred eEEECCCcEEcCCeEEECCCCceEECCCCEECCCcEEecCCCCCeEEcCC------------------cEECCCcEEeee
Confidence 455566666653 2332 4689999999999999875 566665 889999999999
Q ss_pred EeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCC
Q 014564 372 IIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDG 419 (422)
Q Consensus 372 ~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g 419 (422)
+|++++.|++++.+.... +++++++|+.++.+ .++..|+++
T Consensus 79 ~Ig~~~~Ig~~~~v~~~~------~ig~~~~ig~~~~v-~~~~~i~~~ 119 (153)
T cd04645 79 TIGDNCLIGMGAIILDGA------VIGKGSIVAAGSLV-PPGKVIPPG 119 (153)
T ss_pred EECCCCEECCCCEEcCCC------EECCCCEECCCCEE-CCCCEeCCC
Confidence 999999999998887543 45555555555322 344444443
No 134
>PRK14356 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.08 E-value=5.4e-10 Score=112.44 Aligned_cols=119 Identities=20% Similarity=0.319 Sum_probs=78.8
Q ss_pred ccCCCCCCcee-cCCccc-ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcce
Q 014564 284 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 360 (422)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (422)
+.+.+++++.+ .++.+. ++.||++|.|+ ++.+.+|+||++|+|+++|.|+++++.++ +
T Consensus 268 ~~~~i~~~~~i~~~~~i~~~~~ig~~~~I~~~~~i~~~~i~~~~~I~~~~~i~~~~ig~~-------------------~ 328 (456)
T PRK14356 268 PRATIEPGAEIYGPCEIYGASRIARGAVIHSHCWLRDAVVSSGATIHSFSHLEGAEVGDG-------------------C 328 (456)
T ss_pred CCcEECCCCEEeCCcEEeCceEECCCCEECCCeEEEeeEECCCCEEeeeEEEcccceecc-------------------c
Confidence 33444444444 233332 57888888888 46778889999999999888877766544 8
Q ss_pred EeCCCcEEe-eeEeCCCcEECCCeEEccC-----CC-----cccccccCCCeEEcCCe------------EEEcCCceec
Q 014564 361 GIGENTKIK-ECIIDKNARIGKNVIIANS-----EG-----IQEADRSAEGFYIRSGV------------TVILKNSVIT 417 (422)
Q Consensus 361 ~i~~~~~i~-~~~i~~~~~i~~~~~i~~~-----~~-----~~~~~~~~~~~~i~~~~------------~~ig~~~~i~ 417 (422)
.||+++.|. ++++|++|+||+++.+.+. .. .-+++.+++++.|+.++ ++||+++++|
T Consensus 329 ~Ig~~~~i~~~~~ig~~~~ig~~~~i~~~~i~~~~~i~~~~~ig~~~ig~~~~Ig~~~~~~~~~~~~~~~~~igd~~~ig 408 (456)
T PRK14356 329 SVGPYARLRPGAVLEEGARVGNFVEMKKAVLGKGAKANHLTYLGDAEIGAGANIGAGTITCNYDGVNKHRTVIGEGAFIG 408 (456)
T ss_pred EECCceEECCCCEECCCCEecCCceeeeeEecCCcEecccccccCeEECCCCEECCCceeeccccccCCCCEECCCcEEc
Confidence 888888887 6888888888877655331 11 11234566666666663 2467777777
Q ss_pred CCcc
Q 014564 418 DGFV 421 (422)
Q Consensus 418 ~g~~ 421 (422)
+++.
T Consensus 409 ~~~~ 412 (456)
T PRK14356 409 SNTA 412 (456)
T ss_pred CCCE
Confidence 6664
No 135
>TIGR02287 PaaY phenylacetic acid degradation protein PaaY. Members of this family are located next to other genes organized into apparent operons for phenylacetic acid degradation. PaaY is located near the end of these gene clusters and often next to PaaX, a transcriptional regulator.
Probab=99.08 E-value=7.1e-10 Score=97.17 Aligned_cols=95 Identities=15% Similarity=0.310 Sum_probs=44.1
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEcc---eEEECCccccchhhHHhhhcCCCcceEeCCCcEE-----eeeEe
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLKD---TMMLGADFYETDAEVASLLAEGRVPVGIGENTKI-----KECII 373 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i-----~~~~i 373 (422)
+.|.+++.|.+ .+.||++|.|+++|.|++ .+++|++ +.|+++|.| .+|+|
T Consensus 15 ~~I~~~a~I~G----~V~IG~~~~I~~~a~I~gd~g~i~Ig~~------------------t~Ig~~~~I~~~~~~~siI 72 (192)
T TIGR02287 15 AYVHPTAVLIG----DVILGKRCYVGPLASLRGDFGRIVLKEG------------------ANIQDNCVMHGFPGQDTVV 72 (192)
T ss_pred cEECCCCEEEe----eEEECCCCEECCCcEEEccCCceEECCC------------------CEECCCeEEeccCCCCCeE
Confidence 44444444443 455555555555555543 3444443 555555555 23555
Q ss_pred CCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCc
Q 014564 374 DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGF 420 (422)
Q Consensus 374 ~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~ 420 (422)
++++.|+.++++.+ ..+.+.+.++.++.+..+ .+||+++.|++|+
T Consensus 73 g~~~~Ig~~a~I~~-siIg~~~~IG~ga~I~~g-~~IG~~s~Vgags 117 (192)
T TIGR02287 73 EENGHVGHGAILHG-CIVGRNALVGMNAVVMDG-AVIGENSIVAASA 117 (192)
T ss_pred CCCCEECCCCEEcC-CEECCCCEECCCcccCCC-eEECCCCEEcCCC
Confidence 55555555554433 222233333333333333 2244444444444
No 136
>COG1207 GlmU N-acetylglucosamine-1-phosphate uridyltransferase (contains nucleotidyltransferase and I-patch acetyltransferase domains) [Cell envelope biogenesis, outer membrane]
Probab=99.08 E-value=3.2e-10 Score=106.90 Aligned_cols=119 Identities=17% Similarity=0.185 Sum_probs=78.0
Q ss_pred ccCCCCCCcee-cCCccc-ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcce
Q 014564 284 TSRRNLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPV 360 (422)
Q Consensus 284 ~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (422)
..+.+++.+.| .++.++ ++.||++|+|+ +|.+++|.||+++.|.++++|+++.+-.+ +
T Consensus 267 ~dv~ig~DvvI~p~v~l~G~t~ig~~v~iGpg~~i~ds~I~~~a~I~~~S~ie~s~vg~~-------------------~ 327 (460)
T COG1207 267 GDVEIGRDVVIEPNVILEGNTVIGDNVVIGPGSVIKDSVIGDNAVIKAYSVIEGSTVGEG-------------------A 327 (460)
T ss_pred CcEEECCceEEecCcEEeeeEEECCceEECCCcEEEeeEEcCCCEEEecceeeccEecCC-------------------c
Confidence 34445555555 345553 57777777777 35666777777777777777777766443 7
Q ss_pred EeCCCcEEe-eeEeCCCcEECCCeEEccCCCc----------ccccccCCCeEEcCCeEE------------EcCCceec
Q 014564 361 GIGENTKIK-ECIIDKNARIGKNVIIANSEGI----------QEADRSAEGFYIRSGVTV------------ILKNSVIT 417 (422)
Q Consensus 361 ~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~----------~~~~~~~~~~~i~~~~~~------------ig~~~~i~ 417 (422)
.||+.+.|. ++.+++++.||+++.+.+...- -++..||+++-||.|+++ ||++++||
T Consensus 328 ~VGPfA~LRPg~~L~~~~hIGNFVEvK~a~ig~gsKa~HLtYlGDA~iG~~~NiGAGtItcNYDG~nK~~T~IGd~vFiG 407 (460)
T COG1207 328 TVGPFARLRPGAVLGADVHIGNFVEVKKATIGKGSKAGHLTYLGDAEIGENVNIGAGTITCNYDGKNKFKTIIGDNVFIG 407 (460)
T ss_pred ccCCccccCCcCcccCCCeEeeeEEEecccccCCccccceeeeccceecCCceeccceEEEcCCCcccceeeecCCcEEc
Confidence 777777777 5788888888777766653221 123466777777777653 88888888
Q ss_pred CCcc
Q 014564 418 DGFV 421 (422)
Q Consensus 418 ~g~~ 421 (422)
+++.
T Consensus 408 Sns~ 411 (460)
T COG1207 408 SNSQ 411 (460)
T ss_pred cCCc
Confidence 8765
No 137
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=99.08 E-value=9.3e-10 Score=106.09 Aligned_cols=151 Identities=22% Similarity=0.214 Sum_probs=96.4
Q ss_pred eecCCHHH-HHHHHHhccCCC--CCccccCCCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEcc-cee-eeeEEcCC
Q 014564 251 EDIGTIRS-FFEANLALTAHP--PMFSFYDATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITS-SFI-EHSVVGIR 323 (422)
Q Consensus 251 ~di~t~~~-~~~a~~~ll~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~-~~v-~~s~ig~~ 323 (422)
.-+++|.. +......+..+. .....+++.+.+.+++.+++++.+ .++.+. ++.||++|+|+. +.+ .++.||++
T Consensus 75 i~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~a~v~~~~~ig~~~~I~~~~~I~~~~~IG~~~~I~~~~~I~~~~~IG~~ 154 (343)
T PRK00892 75 LVVKNPYLAFARLAQLFDPPATPSPAAGIHPSAVIDPSAKIGEGVSIGPNAVIGAGVVIGDGVVIGAGAVIGDGVKIGAD 154 (343)
T ss_pred EEeCCHHHHHHHHHHHhccccccccCCcCCCCcEECCCCEECCCCEECCCeEEeccceeCCCcEECCCCEEcCCcEECCC
Confidence 34667765 333444342222 123456677777777777766666 344443 456666666663 222 25666777
Q ss_pred cEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe--------------------eeEeCCCcEECCCe
Q 014564 324 SRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK--------------------ECIIDKNARIGKNV 383 (422)
Q Consensus 324 ~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~--------------------~~~i~~~~~i~~~~ 383 (422)
|.|++++.|.+++.++++ |.|+++|.|. +++||+++.||+++
T Consensus 155 ~~I~~~~~I~~~~~Ig~~------------------~~I~~~~~Ig~~~f~~~~~~~~~~~~~~~g~v~Ig~~v~IGa~~ 216 (343)
T PRK00892 155 CRLHANVTIYHAVRIGNR------------------VIIHSGAVIGSDGFGFANDRGGWVKIPQLGRVIIGDDVEIGANT 216 (343)
T ss_pred CEeCCCeEEcCCCEECCC------------------CEECCCCEEeccCcCcccCCCceeeccccccEEECCCcEECCCc
Confidence 777777777666666655 7788888873 47888888888888
Q ss_pred EEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 384 IIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 384 ~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+|.... .+..++++++.|+.++ .|++++.||.+++|
T Consensus 217 ~I~~~~--~~~t~Ig~~~~i~~~v-~I~~~~~IG~~~~i 252 (343)
T PRK00892 217 TIDRGA--LDDTVIGEGVKIDNLV-QIAHNVVIGRHTAI 252 (343)
T ss_pred EEecCc--cccceeCCCCEEeCCe-EEccCCEECCCcEE
Confidence 886532 3567899999998885 45777777777653
No 138
>PLN02296 carbonate dehydratase
Probab=99.07 E-value=8.3e-10 Score=101.52 Aligned_cols=98 Identities=20% Similarity=0.370 Sum_probs=67.5
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcce---EEECCccccchhhHHhhhcCCCcceEeCCCcEEe--------
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 369 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------- 369 (422)
++.|.+++.|.+ .+.||++|.|+++|.|.+. +.+|++ +.|+++|.|.
T Consensus 58 ~~~I~p~A~V~G----~V~IG~~~~I~~gavI~g~~~~I~IG~~------------------~~I~d~~vI~~~~~~~~g 115 (269)
T PLN02296 58 DAFVAPSASVIG----DVQVGRGSSIWYGCVLRGDVNSISVGSG------------------TNIQDNSLVHVAKTNLSG 115 (269)
T ss_pred CCEECCCcEEEc----ceEECCCCEECCCCEEEcCCCceEECCC------------------CEECCCCEEEeCCCcccC
Confidence 456666666655 6778888888888888765 366765 7888888884
Q ss_pred ---eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 370 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 370 ---~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+|+||++|.||+++++.+ ..+.+.+.|+.++.|..++ +||+++.|++|++|
T Consensus 116 ~~~~siIG~~v~IG~~avI~g-~~Igd~v~IG~ga~I~~gv-~Ig~~a~IgagSvV 169 (269)
T PLN02296 116 KVLPTIIGDNVTIGHSAVLHG-CTVEDEAFVGMGATLLDGV-VVEKHAMVAAGALV 169 (269)
T ss_pred CCCCcEeCCCCEECCCceecC-CEECCCcEECCCcEECCCe-EECCCCEECCCCEE
Confidence 478888888888887743 3444555555555555553 45777777777764
No 139
>cd04646 LbH_Dynactin_6 Dynactin 6 (or subunit p27): Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p27 is part of the pointed-end subcomplex in dynactin that also includes p25, p26, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain the imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.07 E-value=8.4e-10 Score=94.66 Aligned_cols=17 Identities=6% Similarity=0.206 Sum_probs=9.2
Q ss_pred eeEEcCCcEECCCCEEc
Q 014564 317 HSVVGIRSRINANVHLK 333 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~ 333 (422)
++.||++|.|+++|.|.
T Consensus 17 ~v~IG~~~~I~~~a~I~ 33 (164)
T cd04646 17 DVTIGPGTVVHPRATII 33 (164)
T ss_pred ceEECCCCEEcCCeEEe
Confidence 45555555555555553
No 140
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.06 E-value=7.5e-10 Score=82.80 Aligned_cols=65 Identities=35% Similarity=0.589 Sum_probs=53.0
Q ss_pred EcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCC
Q 014564 304 ISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 382 (422)
Q Consensus 304 i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~ 382 (422)
|+++|.|+ ++.+.++.||++|+|++++.|+++++.++ +.|++++.|.++++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~-------------------~~i~~~~~i~~svv~~~~~i~~~ 62 (79)
T cd03356 2 IGESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDN-------------------VTIGANSVIVDSIIGDNAVIGEN 62 (79)
T ss_pred ccCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCC-------------------CEECCCCEEECCEECCCCEECCC
Confidence 45566665 34455788999999999999998888765 89999999999999999999999
Q ss_pred eEEcc
Q 014564 383 VIIAN 387 (422)
Q Consensus 383 ~~i~~ 387 (422)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd03356 63 VRVVN 67 (79)
T ss_pred CEEcC
Confidence 88865
No 141
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.06 E-value=1.5e-09 Score=90.61 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=21.2
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCC
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEG 400 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~ 400 (422)
+.|+++++|. ++++.+++.||+++.++.+..+.+...++++
T Consensus 76 v~Ig~~~~Ig~~a~I~~gv~Ig~~~~Ig~g~~V~~~~~I~~~ 117 (139)
T cd03350 76 VIIEDDVFIGANCEVVEGVIVGKGAVLAAGVVLTQSTPIYDR 117 (139)
T ss_pred eEECCCCEECCCCEECCCCEECCCCEEcCCCEEcCCeEeccc
Confidence 4555555554 4555555555555555554444444444443
No 142
>TIGR00965 dapD 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. The closely related TabB protein of Pseudomonas syringae (pv. tabaci) appears to act in the biosynthesis of tabtoxin rather than lysine. The trusted cutoff is set high enough to exclude this gene. Sequences below trusted also include a version of this enzyme which apparently utilize acetate rather than succinate (EC: 2.3.1.89).
Probab=99.05 E-value=1e-09 Score=99.41 Aligned_cols=100 Identities=17% Similarity=0.300 Sum_probs=67.8
Q ss_pred cCCCCCCceecCCcccccEEcCCCEEccceee-eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeC
Q 014564 285 SRRNLPPSKIDDSKIVDSIISHGSFITSSFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 363 (422)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~v~-~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 363 (422)
.+++.|++.+.. .++|+++++|+...+. .+.||.+|.|+.++.|++++.+|++ |.|.
T Consensus 100 ~~rv~p~a~i~~----ga~Ig~~vvI~p~~Vniga~IGeGt~I~~~a~IG~~v~IG~n------------------v~I~ 157 (269)
T TIGR00965 100 GFRVVPGAAVRQ----GAFIAKNVVLMPSYVNIGAYVDEGTMVDTWATVGSCAQIGKN------------------VHLS 157 (269)
T ss_pred CEEECCCcEECC----CcEECCCCEEeeeEEcCCcEECCCCEECCCcEECCCCEECCC------------------CEEc
Confidence 445566555533 4778888888754442 5778888888888888888888876 7777
Q ss_pred CCcEE---------eeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCC
Q 014564 364 ENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSG 406 (422)
Q Consensus 364 ~~~~i---------~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~ 406 (422)
.++.| .+++|+++|.||+++.|.++..+.+.+.++.+++|+.+
T Consensus 158 ~g~~IgG~~ep~~~~~ViIgDnv~IGa~a~I~~GV~IG~gavIGaGavI~~~ 209 (269)
T TIGR00965 158 GGVGIGGVLEPLQANPTIIEDNCFIGARSEIVEGVIVEEGSVISMGVFIGQS 209 (269)
T ss_pred CCcccCCCcccCCCCCeEECCCCEECCCCEEcCCCEECCCCEEeCCCEECCC
Confidence 77777 34788888888888888765544444444444444444
No 143
>cd03350 LbH_THP_succinylT 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (also called THP succinyltransferase): THDP N-succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is homotrimeric and each subunit contains an N-terminal region with alpha helices and hairpin loops, as well as a C-terminal region with a left-handed parallel alpha-helix (LbH) structural motif encoded by hexapeptide repeat motifs.
Probab=99.05 E-value=2e-09 Score=89.89 Aligned_cols=17 Identities=29% Similarity=0.505 Sum_probs=9.0
Q ss_pred eEeCCCcEECCCeEEcc
Q 014564 371 CIIDKNARIGKNVIIAN 387 (422)
Q Consensus 371 ~~i~~~~~i~~~~~i~~ 387 (422)
++|+++|.|++++++..
T Consensus 76 v~Ig~~~~Ig~~a~I~~ 92 (139)
T cd03350 76 VIIEDDVFIGANCEVVE 92 (139)
T ss_pred eEECCCCEECCCCEECC
Confidence 45555555555555544
No 144
>PRK09451 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.04 E-value=8e-10 Score=111.13 Aligned_cols=116 Identities=16% Similarity=0.242 Sum_probs=76.1
Q ss_pred CCCCcee-cCCccc-ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCC
Q 014564 288 NLPPSKI-DDSKIV-DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGE 364 (422)
Q Consensus 288 ~~~~~~~-~~~~~~-~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 364 (422)
+++++.+ .++.+. ++.||++|.|+ ++.+.+|+||++|.|++++.|+++.+ +++ +.|++
T Consensus 268 ig~~~~I~~~~~i~~~v~ig~~~~I~~~~~i~~~~ig~~~~I~~~~~i~~~~i-g~~------------------~~Ig~ 328 (456)
T PRK09451 268 HGRDVEIDTNVIIEGNVTLGNRVKIGAGCVLKNCVIGDDCEISPYSVVEDANL-GAA------------------CTIGP 328 (456)
T ss_pred ECCCCEEcCCeEEecCcEECCCCEECCCceEecCEEcCCCEEcCCEEEeCCcc-CCC------------------cEecC
Confidence 4445555 345454 57888888888 45667888888888888888876644 443 67777
Q ss_pred CcEEe-eeEeCCCcEECCCeEEccC-----C-----CcccccccCCCeEEcCCe------------EEEcCCceecCCcc
Q 014564 365 NTKIK-ECIIDKNARIGKNVIIANS-----E-----GIQEADRSAEGFYIRSGV------------TVILKNSVITDGFV 421 (422)
Q Consensus 365 ~~~i~-~~~i~~~~~i~~~~~i~~~-----~-----~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~ 421 (422)
++.|. ++++++++.||+++.+.+. . ..-+.+.||+++.|+.++ ++||++++||++++
T Consensus 329 ~~~i~~~~~i~~~~~ig~~~~i~~~~i~~~~~~~~~~~~g~~~ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~ig~~~~ 408 (456)
T PRK09451 329 FARLRPGAELAEGAHVGNFVEMKKARLGKGSKAGHLTYLGDAEIGDNVNIGAGTITCNYDGANKFKTIIGDDVFVGSDTQ 408 (456)
T ss_pred ceEEeCCCEECCCceeccceeeeceeeCCCCccCccccccccEECCCCEEcCCeEEecccCcccCCCEECCCcEECCCCE
Confidence 77776 5666666666665544321 1 111235777788887775 34788888888875
Q ss_pred C
Q 014564 422 I 422 (422)
Q Consensus 422 i 422 (422)
|
T Consensus 409 i 409 (456)
T PRK09451 409 L 409 (456)
T ss_pred E
Confidence 3
No 145
>KOG1461 consensus Translation initiation factor 2B, epsilon subunit (eIF-2Bepsilon/GCD6) [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=3.6e-10 Score=110.86 Aligned_cols=97 Identities=28% Similarity=0.495 Sum_probs=70.3
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
++.+++.|.++. +++||.++.||.++.|.+++| |++ |.||+||.|.++.|++||+||
T Consensus 321 dv~~~~~~~v~~----~~~ig~gT~Ig~g~~I~NSVI-G~~------------------c~IgsN~~I~~S~iw~~v~Ig 377 (673)
T KOG1461|consen 321 DVVLSHSVIVGA----NVVIGAGTKIGSGSKISNSVI-GAN------------------CRIGSNVRIKNSFIWNNVTIG 377 (673)
T ss_pred cceehhhccccc----eEEecccccccCCCeeeccee-cCC------------------CEecCceEEeeeeeecCcEEC
Confidence 355555555555 889999999999999999987 454 899999999999999999999
Q ss_pred CCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 381 KNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 381 ~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+||.|.+ ..+...+.|+.++.+..|+ |||.++++|++.++
T Consensus 378 dnc~I~~-aii~d~v~i~~~~~l~~g~-vl~~~VVv~~~~~l 417 (673)
T KOG1461|consen 378 DNCRIDH-AIICDDVKIGEGAILKPGS-VLGFGVVVGRNFVL 417 (673)
T ss_pred CCceEee-eEeecCcEeCCCcccCCCc-EEeeeeEeCCCccc
Confidence 9999975 3344444455555555552 45667777766553
No 146
>PLN02472 uncharacterized protein
Probab=99.04 E-value=1.4e-09 Score=98.69 Aligned_cols=98 Identities=15% Similarity=0.245 Sum_probs=72.7
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcce---EEECCccccchhhHHhhhcCCCcceEeCCCcEEe--------
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-------- 369 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-------- 369 (422)
+++|.+++.+.+ ++.||+++.|.++++|++. +.+|.+ +.|+++|.|.
T Consensus 65 ~~~I~p~a~i~G----~V~Ig~~a~I~~gavirgd~~~I~IG~~------------------t~Ig~~~vI~~~~~~~~~ 122 (246)
T PLN02472 65 DAYVAPNVVLAG----QVTVWDGASVWNGAVLRGDLNKITVGFC------------------SNVQERCVLHAAWNSPTG 122 (246)
T ss_pred CCEECCCCEEec----CEEECCCCEEcCCCEEecCCcceEECCC------------------CEECCCCEEeecCccccC
Confidence 578888888877 7889999999999988764 777776 8888888884
Q ss_pred ---eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCccC
Q 014564 370 ---ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFVI 422 (422)
Q Consensus 370 ---~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~i 422 (422)
+++||++|.||+++++.+ ..+...+.||.++.|..++ +||++++|++|++|
T Consensus 123 i~~~tvIG~~v~IG~~s~L~~-~~Igd~v~IG~~svI~~ga-vIg~~~~Ig~gsvV 176 (246)
T PLN02472 123 LPAETLIDRYVTIGAYSLLRS-CTIEPECIIGQHSILMEGS-LVETHSILEAGSVL 176 (246)
T ss_pred CCCCcEECCCCEECCCcEECC-eEEcCCCEECCCCEECCCC-EECCCCEECCCCEE
Confidence 488888888888888753 4455555666666666663 45777777777653
No 147
>cd04651 LbH_G1P_AT_C Glucose-1-phosphate adenylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Glucose-1-phosphate adenylyltransferase is also known as ADP-glucose synthase or ADP-glucose pyrophosphorylase. It catalyzes the first committed and rate-limiting step in starch biosynthesis in plants and glycogen biosynthesis in bacteria. It is the enzymatic site for regulation of storage polysaccharide accumulation in plants and bacteria. The enzyme is a homotetramer, with each subunit containing an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain with at 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). The LbH domain is involved in cooperative allosteric regulation and oligomerization.
Probab=99.03 E-value=2e-09 Score=84.97 Aligned_cols=61 Identities=20% Similarity=0.394 Sum_probs=53.7
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECC
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGK 381 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~ 381 (422)
+.|++++.| .+|+||++|.|+ ++.|+++.++.+ +.|++++.|.+|++++++.|++
T Consensus 2 ~~i~~~~~i-----~~s~Ig~~~~I~-~~~I~~svi~~~-------------------~~Ig~~~~I~~siI~~~~~Ig~ 56 (104)
T cd04651 2 PYIGRRGEV-----KNSLVSEGCIIS-GGTVENSVLFRG-------------------VRVGSGSVVEDSVIMPNVGIGR 56 (104)
T ss_pred ceecCCCEE-----EeEEECCCCEEc-CeEEEeCEEeCC-------------------CEECCCCEEEEeEEcCCCEECC
Confidence 456666665 389999999999 999999988876 9999999999999999999999
Q ss_pred CeEEcc
Q 014564 382 NVIIAN 387 (422)
Q Consensus 382 ~~~i~~ 387 (422)
++.+.+
T Consensus 57 ~~~i~~ 62 (104)
T cd04651 57 NAVIRR 62 (104)
T ss_pred CCEEEe
Confidence 999864
No 148
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=99.02 E-value=2.5e-09 Score=80.17 Aligned_cols=64 Identities=20% Similarity=0.343 Sum_probs=56.2
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
++.|++++.|++ +++||++|+|+++|+|++++++++ +.|++++.|.+|++++++.|+
T Consensus 5 ~~~I~~~~~i~~----~~~Ig~~~~Ig~~~~i~~sii~~~-------------------~~i~~~~~i~~sii~~~~~v~ 61 (80)
T cd05824 5 SAKIGKTAKIGP----NVVIGPNVTIGDGVRLQRCVILSN-------------------STVRDHSWVKSSIVGWNSTVG 61 (80)
T ss_pred CCEECCCCEECC----CCEECCCCEECCCcEEeeeEEcCC-------------------CEECCCCEEeCCEEeCCCEEC
Confidence 467777777776 889999999999999999888876 899999999999999999999
Q ss_pred CCeEEcc
Q 014564 381 KNVIIAN 387 (422)
Q Consensus 381 ~~~~i~~ 387 (422)
+++.+.+
T Consensus 62 ~~~~~~~ 68 (80)
T cd05824 62 RWTRLEN 68 (80)
T ss_pred CCcEEec
Confidence 9988865
No 149
>PRK14352 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=99.02 E-value=1e-09 Score=111.10 Aligned_cols=102 Identities=13% Similarity=0.174 Sum_probs=52.6
Q ss_pred ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcE
Q 014564 301 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~ 378 (422)
++.||++|.|+ ++.+.+|+||++|.|+. +.+.++.+..+ +.||+++.+. +++||+++.
T Consensus 289 ~v~Ig~~~~I~~~~~i~~~~Ig~~~~i~~-~~~~~~iIg~~-------------------~~Ig~~~~i~~~~vIg~~~~ 348 (482)
T PRK14352 289 RTTIGEDAVVGPDTTLTDVTVGEGASVVR-THGSESEIGAG-------------------ATVGPFTYLRPGTVLGEEGK 348 (482)
T ss_pred cCEECCCCEECCCCEEecCEECCCCEEee-eeeecCEEcCC-------------------CEECCCeEecCCcEEcCCCE
Confidence 35555555555 34444555555555542 33333333222 5666666665 566666665
Q ss_pred ECCCeE-----EccCCCc-----ccccccCCCeEEcCCe------------EEEcCCceecCCccC
Q 014564 379 IGKNVI-----IANSEGI-----QEADRSAEGFYIRSGV------------TVILKNSVITDGFVI 422 (422)
Q Consensus 379 i~~~~~-----i~~~~~~-----~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 422 (422)
||.++. ++....+ -+...+++++.||.++ ++||++++||.+++|
T Consensus 349 ig~~~~~~~~~I~~~~~i~~~~~i~~~~Ig~~~~IG~~~~i~~~~~~~~~~~~IGd~~~iG~~~~i 414 (482)
T PRK14352 349 LGAFVETKNATIGRGTKVPHLTYVGDADIGEHSNIGASSVFVNYDGVNKHRTTIGSHVRTGSDTMF 414 (482)
T ss_pred ECCcEEEcccEECCCcEEccCceecccEECCCcEECCCcEEeccccccCCCCeECCCcEECCCCEE
Confidence 554332 2211111 1234566677776654 357788888777653
No 150
>cd00710 LbH_gamma_CA Gamma carbonic anhydrases (CA): Carbonic anhydrases are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three distinct groups of carbonic anhydrases - alpha, beta and gamma - which show no significant sequence identity or structural similarity. Gamma CAs are homotrimeric enzymes, with each subunit containing a left-handed parallel beta helix (LbH) structural domain.
Probab=99.02 E-value=2.6e-09 Score=92.09 Aligned_cols=95 Identities=16% Similarity=0.178 Sum_probs=73.1
Q ss_pred cccCCCCcccccCCCCCCcee-cCCccc-----ccEEcCCCEEcc-ceee-----eeEEcCCcEECCCCEEcceEEECCc
Q 014564 274 SFYDATKPIYTSRRNLPPSKI-DDSKIV-----DSIISHGSFITS-SFIE-----HSVVGIRSRINANVHLKDTMMLGAD 341 (422)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~~i~~~~~i~~-~~v~-----~s~ig~~~~i~~~~~i~~~~~~~~~ 341 (422)
..+++.+.+.+...+++.+.+ .++.+. ++.||++|.|++ +.+. ++.||+++.|++++.|.+.+.++++
T Consensus 9 ~~I~~~a~i~~~v~iG~~~~I~~~~~i~~~~~~~v~IG~~~~I~~~~~i~~~~~~~v~Ig~~~~I~~~~~i~g~~~Ig~~ 88 (167)
T cd00710 9 AYVHPTAVVIGDVIIGDNVFVGPGASIRADEGTPIIIGANVNIQDGVVIHALEGYSVWIGKNVSIAHGAIVHGPAYIGDN 88 (167)
T ss_pred eEECCCCEEEeeEEECCCcEECCCcEEeCCCCCcEEECCCCEECCCeEEEecCCCCEEECCCceECCCCEEeCCEEECCC
Confidence 345666666666666666666 455553 367888888885 3442 5778999999999999888888886
Q ss_pred cccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEc
Q 014564 342 FYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIA 386 (422)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 386 (422)
+.||.+|.|.++.||++|.||+++.+.
T Consensus 89 ------------------~~Ig~~~~I~~~~Ig~~~~Ig~~s~i~ 115 (167)
T cd00710 89 ------------------CFIGFRSVVFNAKVGDNCVIGHNAVVD 115 (167)
T ss_pred ------------------CEECCCCEEECCEECCCCEEcCCCEEe
Confidence 899999999999999999999998884
No 151
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=99.01 E-value=1.6e-09 Score=96.29 Aligned_cols=68 Identities=18% Similarity=0.272 Sum_probs=33.5
Q ss_pred eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCccccc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEAD 395 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~ 395 (422)
++.||++|.|++++.|.+.+.++++ +.|+.++.+. ++.++++|.||+++.+.. ..
T Consensus 117 ~~~ig~~~~i~~~~~i~~~~~ig~~------------------~~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~ 172 (201)
T TIGR03570 117 DVRIGDNVIINTGAIVEHDCVIGDY------------------VHIAPGVTLSGGVVIGEGVFIGAGATIIQ------GV 172 (201)
T ss_pred CCEECCCcEECCCCEEcCCCEECCC------------------CEECCCCEEeCCcEECCCCEECCCCEEeC------CC
Confidence 4455555555555555444444443 4555555554 355555555555554443 23
Q ss_pred ccCCCeEEcCCeE
Q 014564 396 RSAEGFYIRSGVT 408 (422)
Q Consensus 396 ~~~~~~~i~~~~~ 408 (422)
.++++++|+.+++
T Consensus 173 ~i~~~~~i~~~~~ 185 (201)
T TIGR03570 173 TIGAGAIVGAGAV 185 (201)
T ss_pred EECCCCEECCCCE
Confidence 4444555554443
No 152
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=99.00 E-value=1.9e-09 Score=80.57 Aligned_cols=65 Identities=29% Similarity=0.468 Sum_probs=51.2
Q ss_pred EcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCC
Q 014564 304 ISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKN 382 (422)
Q Consensus 304 i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~ 382 (422)
|+++|+|++ +.+.++.||++|.|++++.|.++.+.++ +.|++++.|.++++++++.|+++
T Consensus 2 ig~~~~I~~~~~i~~s~ig~~~~ig~~~~i~~s~i~~~-------------------~~i~~~~~i~~~~i~~~~~i~~~ 62 (79)
T cd05787 2 IGRGTSIGEGTTIKNSVIGRNCKIGKNVVIDNSYIWDD-------------------VTIEDGCTIHHSIVADGAVIGKG 62 (79)
T ss_pred ccCCCEECCCCEEeccEECCCCEECCCCEEeCcEEeCC-------------------CEECCCCEEeCcEEcCCCEECCC
Confidence 344555542 3445788999999999999988877665 89999999999999999999988
Q ss_pred eEEcc
Q 014564 383 VIIAN 387 (422)
Q Consensus 383 ~~i~~ 387 (422)
+.+.+
T Consensus 63 ~~i~~ 67 (79)
T cd05787 63 CTIPP 67 (79)
T ss_pred CEECC
Confidence 88865
No 153
>cd04650 LbH_FBP Ferripyochelin Binding Protein (FBP): FBP is an outer membrane protein which plays a role in iron acquisition. It binds iron when it is complexed with pyochelin. It adopts the left-handed parallel beta-helix (LbH) structure, and contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Acyltransferase activity has not been observed in this group.
Probab=99.00 E-value=3.1e-09 Score=90.15 Aligned_cols=18 Identities=11% Similarity=0.185 Sum_probs=8.2
Q ss_pred eeEEcCCcEECCCCEEcc
Q 014564 317 HSVVGIRSRINANVHLKD 334 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~ 334 (422)
.+.||++|.|+++|.|.+
T Consensus 18 ~v~iG~~~~I~~~a~I~~ 35 (154)
T cd04650 18 DVVIGELTSVWHYAVIRG 35 (154)
T ss_pred eEEECCCCEEcCCeEEEc
Confidence 344444444444444443
No 154
>TIGR03532 DapD_Ac 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase. Alternate name: tetrahydrodipicolinate N-acetyltransferase. Note that IUBMB lists this alternate name as the accepted name. Unfortunately, the related succinyl transferase acting on the same substrate (EC:2.3.1.117, TIGR00695) uses the opposite standard. We have decided to give these two enzymes names which more clearly indicated that they act on the same substrate.
Probab=99.00 E-value=1.8e-09 Score=97.63 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=12.3
Q ss_pred eeEEcCCcEECCCCEEcceEEECCc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGAD 341 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~ 341 (422)
.+.||++|.|++++.|.+.++++++
T Consensus 116 ~~~IG~~~~I~~~a~I~~~s~Ig~~ 140 (231)
T TIGR03532 116 GAEIGEGTMIDMNAVLGGRATVGKN 140 (231)
T ss_pred CeEECCCCEEccccccCCCcEECCC
Confidence 4455555555555555444444443
No 155
>PRK14355 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=2.2e-09 Score=108.01 Aligned_cols=65 Identities=17% Similarity=0.302 Sum_probs=46.1
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
++.|+++|.|++ +++||++|+|+++|.|+++.+..+ +.|++++.+.+++++++|.||
T Consensus 274 ~~~I~~~~~I~~----~~~Ig~~~~I~~~~~I~~~~Ig~~-------------------~~I~~~~~i~~~~i~~~~~ig 330 (459)
T PRK14355 274 DTTIYPGVCISG----DTRIGEGCTIEQGVVIKGCRIGDD-------------------VTVKAGSVLEDSVVGDDVAIG 330 (459)
T ss_pred CCEEeCCcEEeC----CCEECCCCEECCCCEEeCCEEcCC-------------------CEECCCeEEeCCEECCCCEEC
Confidence 455555555554 789999999999999987655443 778888877777777777776
Q ss_pred CCeEEccC
Q 014564 381 KNVIIANS 388 (422)
Q Consensus 381 ~~~~i~~~ 388 (422)
+++.+...
T Consensus 331 ~~~~i~~~ 338 (459)
T PRK14355 331 PMAHLRPG 338 (459)
T ss_pred CCCEECCC
Confidence 65555443
No 156
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.98 E-value=5e-09 Score=89.73 Aligned_cols=97 Identities=23% Similarity=0.319 Sum_probs=61.9
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceE------------EECCccccchhhHHhhhcCCCcceEeCCCcEE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTM------------MLGADFYETDAEVASLLAEGRVPVGIGENTKI 368 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 368 (422)
++.|+++|+|.+ .+..+.||++|.|+++|.|+++. .++++ +.|++++.+
T Consensus 27 ~~~I~~~~~I~g-~~~~v~IG~~~~I~~~~~I~~~~~~~~~~~~~~~v~Ig~~------------------~~Ig~~~~i 87 (161)
T cd03359 27 KTIIQSDVIIRG-DLATVSIGRYCILSEGCVIRPPFKKFSKGVAFFPLHIGDY------------------VFIGENCVV 87 (161)
T ss_pred ceEEcCCCEEeC-CCcceEECCCcEECCCCEEeCCccccCCCccccCeEECCc------------------cEECCCCEE
Confidence 455555555543 12246889999999999887653 44443 788888888
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceec
Q 014564 369 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVIT 417 (422)
Q Consensus 369 ~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~ 417 (422)
.+++|++++.|+++++++.+..+...+.+++++++..+. .++++++++
T Consensus 88 ~~~~Ig~~v~Ig~~~~Ig~~~~I~~~~~i~~g~~V~~~~-~i~~~~vv~ 135 (161)
T cd03359 88 NAAQIGSYVHIGKNCVIGRRCIIKDCVKILDGTVVPPDT-VIPPYSVVS 135 (161)
T ss_pred EeeEEcCCcEECCCCEEcCCCEECCCcEECCCCEECCCC-EeCCCCEEe
Confidence 888899999999998887754444444444444444442 234444443
No 157
>PRK14353 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=2.5e-09 Score=107.36 Aligned_cols=124 Identities=15% Similarity=0.213 Sum_probs=70.1
Q ss_pred CCCcccccCCCCCCcee-cCCcccccEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhc
Q 014564 278 ATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFITS-SFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLA 354 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 354 (422)
+.+.+.+.+.++.++.+ ..+.+.++.||++|.|+. +.+. +|+||++|.||++|.+.++.+..+..+... +...
T Consensus 279 ~~~~I~~~~~ig~~~~I~~~~~i~~~~Ig~~~~Ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~i~~~~~i~~~----~~i~ 354 (446)
T PRK14353 279 PNVVFGPGVTVASGAVIHAFSHLEGAHVGEGAEVGPYARLRPGAELGEGAKVGNFVEVKNAKLGEGAKVNHL----TYIG 354 (446)
T ss_pred CCCEECCCCEECCCCEECCCeEEeccEECCCcEECCCeEEeccceecCCeEEcCceEEeceEECCCCEECCe----eEEc
Confidence 33344444444444444 334455688999999984 4554 788899999998888865544322100000 0000
Q ss_pred CCCcceEeCCCcEEe-eeEe-------CCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE
Q 014564 355 EGRVPVGIGENTKIK-ECII-------DKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 409 (422)
Q Consensus 355 ~~~~~~~i~~~~~i~-~~~i-------~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ 409 (422)
+ +.||++|.|. ++++ .+++.||++++++.+..+.....|+++++|+.++++
T Consensus 355 ~----~~ig~~~~Ig~~~~~~~~~~~~~~~~~Ig~~~~ig~~~~i~~~~~Ig~~~~ig~~s~v 413 (446)
T PRK14353 355 D----ATIGAGANIGAGTITCNYDGFNKHRTEIGAGAFIGSNSALVAPVTIGDGAYIASGSVI 413 (446)
T ss_pred C----cEEcCCcEECCceeeeccccccCCCcEECCCcEECCCCEEeCCCEECCCCEECCCCEE
Confidence 1 4566666664 2332 234555555555555555556677888888777665
No 158
>PRK14357 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.98 E-value=2.1e-09 Score=107.86 Aligned_cols=62 Identities=21% Similarity=0.332 Sum_probs=37.4
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEcc-----CCCcc-----cccccCCCeEEcCCe------------EEEcCCcee
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIAN-----SEGIQ-----EADRSAEGFYIRSGV------------TVILKNSVI 416 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~-----~~~~~-----~~~~~~~~~~i~~~~------------~~ig~~~~i 416 (422)
+.|++++.|. ++++|++|+||+++.+.+ .+.+. +...|++++.|+.++ ++||++++|
T Consensus 313 ~~ig~~~~i~~~~~ig~~~~Ig~~~~i~~~~ig~~~~~~~~~~~~~~~Ig~~~~ig~~~~~~~~~~~~~~~~~Igd~~~i 392 (448)
T PRK14357 313 VSVGPFSRLREGTVLKKSVKIGNFVEIKKSTIGENTKAQHLTYLGDATVGKNVNIGAGTITCNYDGKKKNPTFIEDGAFI 392 (448)
T ss_pred cEECCCcEECCcccccCCcEecCceeeeccEEcCCcCccccccccCcEECCCcEECCCcccccccccccCCcEECCCCEE
Confidence 6677777775 477777777777654432 12111 134566777776553 346777777
Q ss_pred cCCcc
Q 014564 417 TDGFV 421 (422)
Q Consensus 417 ~~g~~ 421 (422)
|+++.
T Consensus 393 g~~~~ 397 (448)
T PRK14357 393 GSNSS 397 (448)
T ss_pred CCCCE
Confidence 77654
No 159
>cd04645 LbH_gamma_CA_like Gamma carbonic anhydrase-like: This family is composed of gamma carbonic anhydrase (CA), Ferripyochelin Binding Protein (FBP), E. coli paaY protein, and similar proteins. CAs are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism, involving the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide, followed by the regeneration of the active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. They are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionary distinct groups - alpha, beta and gamma carbonic anhydrases - which show no significant sequence identity or structural similarity. Gamma CAs are trimeric enzymes with left-handed parallel beta helix (LbH) structural domain.
Probab=98.98 E-value=3.6e-09 Score=89.92 Aligned_cols=97 Identities=20% Similarity=0.308 Sum_probs=51.3
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcce---EEECCccccchhhHHhhhcCCCcceEeCCCcEEee-----eE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT---MMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-----CI 372 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-----~~ 372 (422)
+++|+++|+|.+ +..+|+++.|++++.|.++ +++|++ +.|+++|.|.. ++
T Consensus 5 ~~~i~~~a~i~g----~v~ig~~~~I~~~~~I~~~~~~~~IG~~------------------~~I~~~~~I~~~~~~~~~ 62 (153)
T cd04645 5 SAFIAPNATVIG----DVTLGEGSSVWFGAVLRGDVNPIRIGER------------------TNIQDGSVLHVDPGYPTI 62 (153)
T ss_pred CeEECCCCEEEE----eEEECCCcEEcCCeEEECCCCceEECCC------------------CEECCCcEEecCCCCCeE
Confidence 355555555554 5566666666666666543 344544 66666666654 36
Q ss_pred eCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecCCcc
Q 014564 373 IDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 373 i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~g~~ 421 (422)
|+++|.|++++.+.+ ..+...+.++.++.+..++ +|+++++|+++++
T Consensus 63 Ig~~~~I~~~~~i~~-~~Ig~~~~Ig~~~~v~~~~-~ig~~~~ig~~~~ 109 (153)
T cd04645 63 IGDNVTVGHGAVLHG-CTIGDNCLIGMGAIILDGA-VIGKGSIVAAGSL 109 (153)
T ss_pred EcCCcEECCCcEEee-eEECCCCEECCCCEEcCCC-EECCCCEECCCCE
Confidence 666666666666543 2233333333333333332 2455555555543
No 160
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.97 E-value=6.8e-09 Score=85.02 Aligned_cols=15 Identities=20% Similarity=0.401 Sum_probs=6.1
Q ss_pred eEEcCCcEECCCCEE
Q 014564 318 SVVGIRSRINANVHL 332 (422)
Q Consensus 318 s~ig~~~~i~~~~~i 332 (422)
+.||.+|.|++++.|
T Consensus 48 a~Ighd~~IG~~~~I 62 (147)
T cd04649 48 VIVGKGSDVGGGASI 62 (147)
T ss_pred EEECCCCEECCCCEE
Confidence 334444444444433
No 161
>COG1043 LpxA Acyl-[acyl carrier protein]
Probab=98.96 E-value=3.1e-09 Score=92.74 Aligned_cols=132 Identities=20% Similarity=0.219 Sum_probs=77.7
Q ss_pred CCcccccCCCCCCceecCCcccccEEcCCCEEcc-------cee-eeeEEcCCcEECCCCEEcceEEECCccccchhhHH
Q 014564 279 TKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITS-------SFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVA 350 (422)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-------~~v-~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~ 350 (422)
.+.++|++.++|.+.+.. ++.||+.|+|+. +.+ .|++|-..++||.+++|.+.+.+|.. +++.
T Consensus 3 ~~~IHPTAiIe~gA~ig~----~V~IGpf~iIg~~V~ig~~t~l~shvvv~G~T~IG~~n~I~~~A~iG~~----pQdl- 73 (260)
T COG1043 3 MAKIHPTAIIEPGAEIGE----DVKIGPFCIIGPNVEIGDGTVLKSHVVVEGHTTIGRNNRIFPFASIGED----PQDL- 73 (260)
T ss_pred ccccCcceeeCCCCCcCC----CCEECceEEECCCcEECCCcEEcccEEEeCCeEECCCCEEecccccCCC----Cccc-
Confidence 456677777777666632 455566665554 122 24444445555555555555555542 1111
Q ss_pred hhhcCCCcceEeCCCcEEee-eEeC-------CCcEECCCeEEccCCCcccccccCCCeEEcCCeEE-----EcCCceec
Q 014564 351 SLLAEGRVPVGIGENTKIKE-CIID-------KNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV-----ILKNSVIT 417 (422)
Q Consensus 351 ~~~~~~~~~~~i~~~~~i~~-~~i~-------~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~-----ig~~~~i~ 417 (422)
.+.+..-.+.||+++.|.. +.+- .-.+||++..+..+.-+..+|++|+++++..++++ ||+.++||
T Consensus 74 -Kykge~T~l~IG~~n~IRE~vTi~~GT~~g~g~T~IGdnnl~May~HVAHDC~iGn~~ilaNnatLAGHV~igD~aiiG 152 (260)
T COG1043 74 -KYKGEPTRLIIGDNNTIREFVTIHRGTVQGGGVTRIGDNNLIMAYAHVAHDCVIGNNCILANNATLAGHVEVGDYAIIG 152 (260)
T ss_pred -ccCCCceEEEECCCCeEeeEEEEeccccCCceeEEECCCCEEEEeeeeeccceecCcEEEecCCeEeccEEECCEEEEc
Confidence 1222222278899999863 4442 33567777777777777788888888888877654 66666666
Q ss_pred CCc
Q 014564 418 DGF 420 (422)
Q Consensus 418 ~g~ 420 (422)
..+
T Consensus 153 G~s 155 (260)
T COG1043 153 GLS 155 (260)
T ss_pred Ccc
Confidence 554
No 162
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.95 E-value=4.1e-09 Score=93.15 Aligned_cols=44 Identities=25% Similarity=0.297 Sum_probs=19.6
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEE
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTV 409 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ 409 (422)
+.|+.++.+. +++||++|.||.++.+.. ...+++++.++.++++
T Consensus 139 ~~i~~~~~i~~~~~ig~~~~ig~~~~v~~------~~~ig~~~~v~~~~~v 183 (197)
T cd03360 139 VHIAPGVVLSGGVTIGEGAFIGAGATIIQ------GVTIGAGAIIGAGAVV 183 (197)
T ss_pred CEECCCCEEcCCcEECCCCEECCCCEEcC------CCEECCCCEECCCCEE
Confidence 4444444443 244444444444444432 3344555555555443
No 163
>cd03356 LbH_G1P_AT_C_like Left-handed parallel beta-Helix (LbH) domain of a group of proteins with similarity to glucose-1-phosphate adenylyltransferase: Included in this family are glucose-1-phosphate adenylyltransferase, mannose-1-phosphate guanylyltransferase, and the eukaryotic translation initiation factor eIF-2B subunits, epsilon and gamma. Most members of this family contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold, followed by a LbH fold domain with at least 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). eIF-2B epsilon contains an additional domain of unknown function at the C-terminus. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.93 E-value=6.7e-09 Score=77.60 Aligned_cols=74 Identities=24% Similarity=0.346 Sum_probs=60.9
Q ss_pred CCCcee-cCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCc
Q 014564 289 LPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENT 366 (422)
Q Consensus 289 ~~~~~~-~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 366 (422)
++.+.+ +++.+.++.|+++|.|+ ++.+.+++|+++++|++++.|.++++.++ +.|++++
T Consensus 3 g~~~~I~~~~~i~~s~ig~~~~Ig~~~~i~~svi~~~~~i~~~~~i~~svv~~~-------------------~~i~~~~ 63 (79)
T cd03356 3 GESTVIGENAIIKNSVIGDNVRIGDGVTITNSILMDNVTIGANSVIVDSIIGDN-------------------AVIGENV 63 (79)
T ss_pred cCCcEECCCCEEeCCEECCCCEECCCCEEeCCEEeCCCEECCCCEEECCEECCC-------------------CEECCCC
Confidence 344555 45666678899999998 56788999999999999999999887655 8999999
Q ss_pred EEee-eEeCCCcEECC
Q 014564 367 KIKE-CIIDKNARIGK 381 (422)
Q Consensus 367 ~i~~-~~i~~~~~i~~ 381 (422)
.+.+ +++++++.|++
T Consensus 64 ~i~~~~~ig~~~~i~~ 79 (79)
T cd03356 64 RVVNLCIIGDDVVVED 79 (79)
T ss_pred EEcCCeEECCCeEECc
Confidence 9987 99988888864
No 164
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.92 E-value=4.2e-09 Score=85.40 Aligned_cols=67 Identities=24% Similarity=0.215 Sum_probs=36.0
Q ss_pred ccEEcCCCEEcc-cee-eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcE
Q 014564 301 DSIISHGSFITS-SFI-EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v-~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~ 378 (422)
++.|+++|.|+. +.+ .++.||++|.|++++.+.+....+ ..+..++.+.+++||++|.
T Consensus 16 ~~~Ig~~~~I~~~~~i~~~~~Ig~~~~I~~~~~i~~~~~~~--------------------~~~~~~~~~~~~~Ig~~~~ 75 (119)
T cd03358 16 DVKIGDNVKIQSNVSIYEGVTIEDDVFIGPNVVFTNDLYPR--------------------SKIYRKWELKGTTVKRGAS 75 (119)
T ss_pred CcEECCCcEECCCcEEeCCeEECCCcEEcCCeEEecCCCCc--------------------cccccccccCCcEECCCcE
Confidence 466677777764 122 145555555555555544432222 2333455566677777777
Q ss_pred ECCCeEEcc
Q 014564 379 IGKNVIIAN 387 (422)
Q Consensus 379 i~~~~~i~~ 387 (422)
|++++.+.+
T Consensus 76 Ig~~~~v~~ 84 (119)
T cd03358 76 IGANATILP 84 (119)
T ss_pred ECcCCEEeC
Confidence 777666654
No 165
>TIGR03570 NeuD_NnaD sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family. These proteins contain repeats of the bacterial transferase hexapeptide (pfam00132), although often these do not register above the trusted cutoff.
Probab=98.92 E-value=1.5e-08 Score=90.08 Aligned_cols=19 Identities=16% Similarity=-0.099 Sum_probs=9.9
Q ss_pred eEeecCCHHHHHHHHHhcc
Q 014564 249 YWEDIGTIRSFFEANLALT 267 (422)
Q Consensus 249 ~~~di~t~~~~~~a~~~ll 267 (422)
++..++.+....+....+.
T Consensus 62 ~iiai~~~~~~~~i~~~l~ 80 (201)
T TIGR03570 62 LVVAIGDNKLRRRLFEKLK 80 (201)
T ss_pred EEEEcCCHHHHHHHHHHHH
Confidence 3555655555555554443
No 166
>cd03360 LbH_AT_putative Putative Acyltransferase (AT), Left-handed parallel beta-Helix (LbH) domain; This group is composed of mostly uncharacterized proteins containing an N-terminal helical subdomain followed by a LbH domain. The alignment contains 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. A few members are identified as NeuD, a sialic acid (Sia) O-acetyltransferase that is required for Sia synthesis and surface polysaccharide sialylation.
Probab=98.91 E-value=8e-09 Score=91.24 Aligned_cols=12 Identities=33% Similarity=0.393 Sum_probs=5.5
Q ss_pred EcCCceecCCcc
Q 014564 410 ILKNSVITDGFV 421 (422)
Q Consensus 410 ig~~~~i~~g~~ 421 (422)
||+++.|+++++
T Consensus 171 ig~~~~v~~~~~ 182 (197)
T cd03360 171 IGAGAIIGAGAV 182 (197)
T ss_pred ECCCCEECCCCE
Confidence 344444444443
No 167
>TIGR03308 phn_thr-fam phosphonate metabolim protein, transferase hexapeptide repeat family. This family of proteins contains copies of the Bacterial transferase hexapeptide repeat family (pfam00132) and is only found in operons encoding the phosphonate C-P lyase system (GenProp0232). Many C-P lyase operons, however, lack a homolog of this protein.
Probab=98.89 E-value=9.6e-09 Score=91.15 Aligned_cols=59 Identities=14% Similarity=0.165 Sum_probs=34.6
Q ss_pred ccCCCCcccccCCCCCCcee-cCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcc
Q 014564 275 FYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKD 334 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~ 334 (422)
.+++++.+. .+.+++.+.+ .++.+.++.||++|.|+ ++.+.++.||.+|.|++++.|..
T Consensus 10 ~I~~~a~i~-~~~IG~~~~Ig~~a~I~~s~IG~~s~I~~~~~i~~~~IG~~~~I~~~v~I~~ 70 (204)
T TIGR03308 10 TLHPTAELT-ESKLGRYTEIGERTRLREVALGDYSYVMRDCDIIYTTIGKFCSIAAMVRINA 70 (204)
T ss_pred eECCCcEEe-ccEeCCCcEECCCcEEeCCEECCCCEECCCcEEeeeEECCCCEECCCCEECC
Confidence 344445443 2455555555 44566666677777766 34555666666666666666654
No 168
>PRK13627 carnitine operon protein CaiE; Provisional
Probab=98.87 E-value=1.1e-08 Score=89.88 Aligned_cols=27 Identities=15% Similarity=0.261 Sum_probs=12.9
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIA 386 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 386 (422)
+.||.++.+. +++||+++.|++++++.
T Consensus 95 v~IG~ga~V~~g~~IG~~s~Vgags~V~ 122 (196)
T PRK13627 95 ALVGMNSVIMDGAVIGEESIVAAMSFVK 122 (196)
T ss_pred CEECcCCccCCCcEECCCCEEcCCCEEe
Confidence 4555554443 24455555555544443
No 169
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.86 E-value=7.9e-09 Score=94.48 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=11.8
Q ss_pred ccCCCeEEcCCeEE---EcCCceecCCcc
Q 014564 396 RSAEGFYIRSGVTV---ILKNSVITDGFV 421 (422)
Q Consensus 396 ~~~~~~~i~~~~~~---ig~~~~i~~g~~ 421 (422)
.||++++||.|+++ ||++++|++|++
T Consensus 252 ~IGe~~lIGagA~IGI~IGd~~iIGAGav 280 (341)
T TIGR03536 252 SVGEGCLLGANAGIGIPLGDRCTVEAGLY 280 (341)
T ss_pred EECCCcEECCCCEEeeEECCCCEECCCCE
Confidence 33444444444332 455555555554
No 170
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.86 E-value=1.7e-08 Score=78.99 Aligned_cols=65 Identities=14% Similarity=0.233 Sum_probs=39.7
Q ss_pred cEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEE
Q 014564 302 SIISHGSFITS-SFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARI 379 (422)
Q Consensus 302 ~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i 379 (422)
++|+++|.|+. +.+. .+.||++|+|+. .|.++++++. +.++++++|.+++||++++|
T Consensus 30 v~IG~~~~Ig~~~~I~~~v~IG~~~~Ig~--~i~~svi~~~-------------------~~i~~~~~lg~siIg~~v~i 88 (101)
T cd05635 30 VYIGPGSRVKMGARIYGNTTIGPTCKIGG--EVEDSIIEGY-------------------SNKQHDGFLGHSYLGSWCNL 88 (101)
T ss_pred CEECCCCEECCCCEEeCcCEECCCCEECC--EECccEEcCC-------------------CEecCcCEEeeeEECCCCEE
Confidence 44455555543 1221 455555555543 3555655554 67777788888888888888
Q ss_pred CCCeEEcc
Q 014564 380 GKNVIIAN 387 (422)
Q Consensus 380 ~~~~~i~~ 387 (422)
|+++.+.|
T Consensus 89 g~~~~~~~ 96 (101)
T cd05635 89 GAGTNNSD 96 (101)
T ss_pred CCCceecc
Confidence 88877765
No 171
>KOG1460 consensus GDP-mannose pyrophosphorylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=5.1e-09 Score=93.89 Aligned_cols=66 Identities=17% Similarity=0.239 Sum_probs=56.2
Q ss_pred ccccCCCCcccccCCCCCCcee-------cCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEE
Q 014564 273 FSFYDATKPIYTSRRNLPPSKI-------DDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMML 338 (422)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~ 338 (422)
..+++|++++++++.++|+++| +|+++++++|.++|.|.+ ++|.+|+|||+|.||.|++++...+.
T Consensus 288 dVyIhPsakvhptAkiGPNVSIga~vrvg~GvRl~~sIIl~d~ei~enavVl~sIigw~s~iGrWaRVe~~pv~ 361 (407)
T KOG1460|consen 288 DVYIHPSAKVHPTAKIGPNVSIGANVRVGPGVRLRESIILDDAEIEENAVVLHSIIGWKSSIGRWARVEGIPVE 361 (407)
T ss_pred eeEEcCcceeCCccccCCCceecCCceecCCceeeeeeeccCcEeeccceEEeeeecccccccceeeecccccc
Confidence 3477899999999998888887 356677899999999994 68899999999999999999876554
No 172
>PRK14359 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.86 E-value=1.1e-08 Score=102.27 Aligned_cols=20 Identities=20% Similarity=0.255 Sum_probs=8.8
Q ss_pred ccCCCeEEcCCeEEEcCCcee
Q 014564 396 RSAEGFYIRSGVTVILKNSVI 416 (422)
Q Consensus 396 ~~~~~~~i~~~~~~ig~~~~i 416 (422)
.+..++.|+.++ +||+++.|
T Consensus 381 ~i~~~~~ig~~~-~i~~g~~v 400 (430)
T PRK14359 381 QLVAPVNIEDNV-LIAAGSTV 400 (430)
T ss_pred EEeCCcEECCCC-EECCCCEE
Confidence 334444555553 33444443
No 173
>cd05787 LbH_eIF2B_epsilon eIF-2B epsilon subunit, central Left-handed parallel beta-Helix (LbH) domain: eIF-2B is a eukaryotic translation initiator, a guanine nucleotide exchange factor (GEF) composed of five different subunits (alpha, beta, gamma, delta and epsilon). eIF2B is important for regenerating GTP-bound eIF2 during the initiation process. This event is obligatory for eIF2 to bind initiator methionyl-tRNA, forming the ternary initiation complex. The eIF-2B epsilon subunit contains an N-terminal domain that resembles a dinucleotide-binding Rossmann fold, a central LbH domain containing 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), and a C-terminal domain of unknown function that is present in eIF-4 gamma, eIF-5, and eIF-2B epsilon. The epsilon and gamma subunits form the catalytic subcomplex of eIF-2B, which binds eIF2 and catalyzes guanine nucleotide exchange.
Probab=98.85 E-value=9.7e-09 Score=76.67 Aligned_cols=78 Identities=23% Similarity=0.356 Sum_probs=56.3
Q ss_pred EEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccccC
Q 014564 319 VVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADRSA 398 (422)
Q Consensus 319 ~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~ 398 (422)
+||++++|++++.|+++.+ +++ +.|++++.|.+|++++++.|++++.+.+ ..+.+...++
T Consensus 1 ~ig~~~~I~~~~~i~~s~i-g~~------------------~~ig~~~~i~~s~i~~~~~i~~~~~i~~-~~i~~~~~i~ 60 (79)
T cd05787 1 VIGRGTSIGEGTTIKNSVI-GRN------------------CKIGKNVVIDNSYIWDDVTIEDGCTIHH-SIVADGAVIG 60 (79)
T ss_pred CccCCCEECCCCEEeccEE-CCC------------------CEECCCCEEeCcEEeCCCEECCCCEEeC-cEEcCCCEEC
Confidence 4789999999999987655 444 9999999999999999999999998863 3344444555
Q ss_pred CCeEEcCCeEEEcCCceec
Q 014564 399 EGFYIRSGVTVILKNSVIT 417 (422)
Q Consensus 399 ~~~~i~~~~~~ig~~~~i~ 417 (422)
++++|+.++ +++++++||
T Consensus 61 ~~~~i~~~~-~v~~~~~ig 78 (79)
T cd05787 61 KGCTIPPGS-LISFGVVIG 78 (79)
T ss_pred CCCEECCCC-EEeCCcEeC
Confidence 555554443 234555444
No 174
>PRK14360 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=1.6e-08 Score=101.54 Aligned_cols=102 Identities=28% Similarity=0.325 Sum_probs=61.0
Q ss_pred ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcE
Q 014564 301 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~ 378 (422)
++.||++|.|+ ++.+.+|.||++|+|+ ++.+.++.+. ++ +.|+++|.|. +|+||++|.
T Consensus 280 ~~~ig~~~~I~~~~~I~~~~I~~~~~I~-~~~i~~~~ig-~~------------------~~I~~~~~I~~~~~Ig~~~~ 339 (450)
T PRK14360 280 NTVIGSGCRIGPGSLIENSQIGENVTVL-YSVVSDSQIG-DG------------------VKIGPYAHLRPEAQIGSNCR 339 (450)
T ss_pred CcEECCCCEECCCcEEEEEEEcCCCEEe-eeEEeecccc-CC------------------cEECCCCEECCCCEEeCceE
Confidence 45556666665 3444555566666553 3444444333 22 7888888887 688888888
Q ss_pred ECCCeEEccCCC----------cccccccCCCeEEcCCe------------EEEcCCceecCCccC
Q 014564 379 IGKNVIIANSEG----------IQEADRSAEGFYIRSGV------------TVILKNSVITDGFVI 422 (422)
Q Consensus 379 i~~~~~i~~~~~----------~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~i 422 (422)
|++++.+.+... .-++..+++++.||.++ ++||++++||++++|
T Consensus 340 Ig~~~~i~~~~i~~~~~i~~~~~~~~~~i~~~~~iG~~~~~~~~~~~~~~~~~Ig~~~~iG~~~~i 405 (450)
T PRK14360 340 IGNFVEIKKSQLGEGSKVNHLSYIGDATLGEQVNIGAGTITANYDGVKKHRTVIGDRSKTGANSVL 405 (450)
T ss_pred ECCCEEEeccccCCCcEeccceecCCceecCCcEECccceeccccccccCCcEeCCCeEeCCCCEE
Confidence 888877643211 11233566666666653 346777777777653
No 175
>PRK14354 glmU bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase; Provisional
Probab=98.82 E-value=1.4e-08 Score=102.39 Aligned_cols=101 Identities=22% Similarity=0.274 Sum_probs=55.3
Q ss_pred ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcE
Q 014564 301 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~ 378 (422)
++.||++|.|+ ++.+.+|.||++|+|++ +.+.++.+..+ +.||++|.|. +++||++|.
T Consensus 283 ~~~Ig~~~~I~~~~~i~~~~ig~~~~I~~-~~i~~~~ig~~-------------------~~Ig~~~~i~~~~~Ig~~~~ 342 (458)
T PRK14354 283 NTVIGEDCVIGPGSRIVDSTIGDGVTITN-SVIEESKVGDN-------------------VTVGPFAHLRPGSVIGEEVK 342 (458)
T ss_pred ceEECCCCEECCCcEEeccEECCCCEEEE-EEEeCCEECCC-------------------cEECCceEecCCCEEeCCcE
Confidence 45566666665 34445556666665552 34444333222 6666666666 567777777
Q ss_pred ECCCeEEccC-----C-----CcccccccCCCeEEcCCe------------EEEcCCceecCCcc
Q 014564 379 IGKNVIIANS-----E-----GIQEADRSAEGFYIRSGV------------TVILKNSVITDGFV 421 (422)
Q Consensus 379 i~~~~~i~~~-----~-----~~~~~~~~~~~~~i~~~~------------~~ig~~~~i~~g~~ 421 (422)
|++++.+.+. . ..-+...+++++.|+.++ ++||++++||.++.
T Consensus 343 i~~~~~i~~~~i~~~~~i~~~~~~~~~~ig~~~~ig~~~~~~~~~~~~~~~~~igd~~~ig~~s~ 407 (458)
T PRK14354 343 IGNFVEIKKSTIGEGTKVSHLTYIGDAEVGENVNIGCGTITVNYDGKNKFKTIIGDNAFIGCNSN 407 (458)
T ss_pred ECCceEEeeeEECCCCEecceeeecCcccCCceEEcCceeecccccccccCCEECCCcEEccCCE
Confidence 6666554321 1 111234666667666553 24567777777664
No 176
>PRK11830 dapD 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase; Provisional
Probab=98.80 E-value=3.8e-08 Score=90.15 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=7.8
Q ss_pred eEeCCCcEECCCeEEc
Q 014564 371 CIIDKNARIGKNVIIA 386 (422)
Q Consensus 371 ~~i~~~~~i~~~~~i~ 386 (422)
++|+++|.||+++.+.
T Consensus 177 viIgDnv~IGa~s~I~ 192 (272)
T PRK11830 177 VIIEDNCFIGARSEVV 192 (272)
T ss_pred eEEcCCCEECCCCEEc
Confidence 4445555555554443
No 177
>cd04193 UDPGlcNAc_PPase UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1 to PPi and UDPGlcNAc. UDP-N-acetylglucosamine (UDPGlcNAc), the activated form of GlcNAc, is a key precursor of N- and O-linked glycosylations. It is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker which anchors a variety of cell surface proteins to the plasma membrane. In bacteria, UDPGlcNAc represents an essential precursor for both peptidoglycan and lipopolysaccharide biosynthesis. Human UAP has two isoforms, resulting from alternative splicing of a single gene and differing by the presence or absence of 17 amino acids. UDPGlcNAc pyrophosphorylase shares significant sequence and structure conservation with UDPglucose pyrophosphorylase.
Probab=98.78 E-value=2.1e-07 Score=88.34 Aligned_cols=157 Identities=18% Similarity=0.257 Sum_probs=96.3
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC---CcceeehhhhhhhhhcC-----------CcEEEEEee-cChHHHHH
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINSG-----------INKVYILTQ-YNSASLNR 71 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~~g-----------i~~i~Iv~~-~~~~~i~~ 71 (422)
.++.+||||||.|||| +...||+|+||+ |+ |++++.++++...+ .-.++|.++ +..+++.+
T Consensus 14 ~~va~viLaGG~GTRL---g~~~PK~l~pv~~~~~k-~ll~~~~e~l~~l~~~~~~~~~~~~~ip~~imtS~~t~~~t~~ 89 (323)
T cd04193 14 GKVAVLLLAGGQGTRL---GFDGPKGMFPVGLPSKK-SLFQLQAERILKLQELAGEASGKKVPIPWYIMTSEATHEETRK 89 (323)
T ss_pred CCEEEEEECCCccccc---CCCCCeEEEEecCCCCC-cHHHHHHHHHHHHHHHHhhccCCCCCceEEEEcChhHhHHHHH
Confidence 4688999999999999 577899999998 68 99999999998842 124557777 66688999
Q ss_pred HHHhhccCCCCc---c-cCCCeEEEeccCCCC----CcCCcccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcCCee-
Q 014564 72 HLARAYNYGSGV---T-FGDGCVEVLAATQTP----GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL- 140 (422)
Q Consensus 72 ~l~~~~~~~~~~---~-~~~~~v~i~~~~~~~----~~~~~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i- 140 (422)
++++...|+... . +.+..+..+..+... ...-...+.|.++...+... .++++....-+.+.+.+.|.+
T Consensus 90 ~~~~~~~fGl~~~~i~~f~Q~~~P~~~~~g~~~l~~~~~~~~~P~GhG~i~~aL~~sG~l~~l~~~G~~yi~v~~vDN~L 169 (323)
T cd04193 90 FFKENNYFGLDPEQVHFFQQGMLPCVDFDGKILLEEKGKIAMAPNGNGGLYKALQTAGILEDMKKRGIKYIHVYSVDNIL 169 (323)
T ss_pred HHHhCCcCCCCCceEEEEecCceeeEcCCCccccCCCCccccCCCCchHHHHHHHHCChHHHHHhCCCEEEEEEecCccc
Confidence 998743243211 1 011111111111100 00011234477665554321 222221134589999999994
Q ss_pred eecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 141 YRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 141 ~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
....-..++-.+..+++++++-+.+..
T Consensus 170 ~~~~Dp~~lG~~~~~~~~~~~kvv~k~ 196 (323)
T cd04193 170 VKVADPVFIGFCISKGADVGAKVVRKR 196 (323)
T ss_pred ccccCHHHhHHHHHcCCceEEEEEECC
Confidence 322224577777888888877666554
No 178
>cd05635 LbH_unknown Uncharacterized proteins, Left-handed parallel beta-Helix (LbH) domain: Members in this group are uncharacterized bacterial proteins containing a LbH domain with multiple turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.77 E-value=6.8e-08 Score=75.56 Aligned_cols=65 Identities=14% Similarity=0.254 Sum_probs=39.2
Q ss_pred eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEccCCCcccccc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIANSEGIQEADR 396 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~~~~~~~~~~ 396 (422)
.+.||+++.|++++.|++.+.+|.+ +.|+. .+.+|++++++.++.++.+++
T Consensus 29 ~v~IG~~~~Ig~~~~I~~~v~IG~~------------------~~Ig~--~i~~svi~~~~~i~~~~~lg~--------- 79 (101)
T cd05635 29 PVYIGPGSRVKMGARIYGNTTIGPT------------------CKIGG--EVEDSIIEGYSNKQHDGFLGH--------- 79 (101)
T ss_pred CCEECCCCEECCCCEEeCcCEECCC------------------CEECC--EECccEEcCCCEecCcCEEee---------
Confidence 4666666666666666665555554 55543 345666666666666655543
Q ss_pred cCCCeEEcCCeEEEcCCceecCCcc
Q 014564 397 SAEGFYIRSGVTVILKNSVITDGFV 421 (422)
Q Consensus 397 ~~~~~~i~~~~~~ig~~~~i~~g~~ 421 (422)
.+||+++.|++++.
T Consensus 80 -----------siIg~~v~ig~~~~ 93 (101)
T cd05635 80 -----------SYLGSWCNLGAGTN 93 (101)
T ss_pred -----------eEECCCCEECCCce
Confidence 35566677776654
No 179
>cd04180 UGPase_euk_like Eukaryotic UGPase-like includes UDPase and UDPGlcNAc pyrophosphorylase enzymes. This family includes UDP-Glucose Pyrophosphorylase (UDPase) and UDPGlcNAc pyrophosphorylase enzymes. The two enzymes share significant sequence and structure similarity. UDP-Glucose Pyrophosphorylase catalyzes a reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids , glycoproteins , and proteoglycans . UDP-N-acetylglucosamine (UDPGlcNAc) pyrophosphorylase (UAP) (also named GlcNAc1P uridyltransferase), catalyzes the reversible conversion of UTP and GlcNAc1P from PPi and UDPGlcNAc, which is a key precursor of N- and O-linked glycosylations and is essential for the synthesis of chitin (a major component of the fungal cell wall) and of the glycosylphosphatidylinositol (GPI) linker anchoring a variety o
Probab=98.77 E-value=4.8e-07 Score=83.73 Aligned_cols=202 Identities=15% Similarity=0.183 Sum_probs=111.5
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeC---Ccceeehhhhhhhhh--------cCCcEEEEEeecChHHHHHHHHhhcc
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCIN--------SGINKVYILTQYNSASLNRHLARAYN 78 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~--------~gi~~i~Iv~~~~~~~i~~~l~~~~~ 78 (422)
-+|+||||.||||+ ...||+|+||+ |+ |+|++.++++.. .++..+++...+..+++++++++..
T Consensus 2 a~viLaGG~GtRLg---~~~PK~~~~i~~~~gk-~~l~~~~~~i~~~~~~~~~~~~Ip~~imts~~t~~~t~~~l~~~~- 76 (266)
T cd04180 2 AVVLLAGGLGTRLG---KDGPKSSTDVGLPSGQ-CFLQLIGEKILTLQEIDLYSCKIPEQLMNSKYTHEKTQCYFEKIN- 76 (266)
T ss_pred EEEEECCCCccccC---CCCCceeeeecCCCCC-cHHHHHHHHHHHHHHHhhcCCCCCEEEEcCchhHHHHHHHHHHcC-
Confidence 47999999999995 78999999999 99 999999999986 3466666666677788999998743
Q ss_pred CCCCc--ccCCCeEEEeccCCCC--C--cCCcccccCcHHHHHHHH--HHhcCCCCCccCeEEEEcCCee-eecChHHHH
Q 014564 79 YGSGV--TFGDGCVEVLAATQTP--G--EAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHL-YRMDYMDFV 149 (422)
Q Consensus 79 ~~~~~--~~~~~~v~i~~~~~~~--~--~~~~~~~~g~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i-~~~~l~~ll 149 (422)
+.... .|.++.+..+...... . ......+.|.++.+.... ..++.+.....+.+.+.+.|.+ ....=..++
T Consensus 77 ~~~~~v~~f~Q~~~P~~~~~~~~~~~~~~~~~~~P~GnGdi~~~L~~sglLd~l~~~G~~yi~v~~vDN~la~v~DP~~l 156 (266)
T cd04180 77 QKNSYVITFMQGKLPLKNDDDARDPHNKTKCHLFPCGHGDVVLALIHSGHLNKLLEKGYRYIHFIGVDNLLVKVADPLFI 156 (266)
T ss_pred CCCCceEEEEeCCceEEeCCCCcccCCCCceeeccCCcHHHHHHHHHCChHHHHHHcCCEEEEEEccCccCccccCHHHH
Confidence 11111 1111111111100000 0 000122346666655332 1122211123578888888883 344122355
Q ss_pred HHHHHcCCcEEEEEeecCCCCCcccCCceeeeccce--eeeeeecCC----------------CCCCceeeeeEEEEeHH
Q 014564 150 QNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT--VLGLSKQEA----------------EEKPYIASMGVYLFKKE 211 (422)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~--v~~~~~k~~----------------~~~~~~~~~Giy~~~~~ 211 (422)
-.+...+.++.+-+.+....+. .-+......+++ +.++.+=+. .......++...+|+.+
T Consensus 157 G~~~~~~~~~~~kvv~K~~~d~--k~G~~~~~~~g~~~~vEyse~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~l~ 234 (266)
T cd04180 157 GIAIQNRKAINQKVVPKTRNEE--SGGYRIANINGRVQLLEYDQIKKLLKQKMVNNQIPKDIDDAPFFLFNTNNLINFLV 234 (266)
T ss_pred HHHHHcCCCEEEEEEECCCCCC--eEEEEEEecCCCEEEEEeccCCHHHHhccccccCcCCCCceeeccceEEEEEEEHH
Confidence 5666667776665544432111 111222222243 444432110 11235568889999988
Q ss_pred HHHHHHh
Q 014564 212 ILLNLLR 218 (422)
Q Consensus 212 ~l~~ll~ 218 (422)
.++++++
T Consensus 235 ~l~~~~~ 241 (266)
T cd04180 235 EFKDRVD 241 (266)
T ss_pred HHHHHHH
Confidence 8876654
No 180
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.76 E-value=3.5e-08 Score=89.85 Aligned_cols=28 Identities=11% Similarity=0.209 Sum_probs=15.9
Q ss_pred cccCCCeEEcCCeEE---EcCCceecCCccC
Q 014564 395 DRSAEGFYIRSGVTV---ILKNSVITDGFVI 422 (422)
Q Consensus 395 ~~~~~~~~i~~~~~~---ig~~~~i~~g~~i 422 (422)
+.||++++||.|+++ ||++++||+|++|
T Consensus 226 V~IGe~~~IGagA~IGI~IGd~~VVGAGaVV 256 (319)
T TIGR03535 226 ISIGERCLLGANSGLGISLGDDCVVEAGLYV 256 (319)
T ss_pred EEECCCcEECCCCEECeEECCCCEECCCCEE
Confidence 345555555555443 6666666666653
No 181
>cd04649 LbH_THP_succinylT_putative Putative 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate (THDP) N-succinyltransferase (THP succinyltransferase), C-terminal left-handed parallel alpha-helix (LbH) domain: This group is composed of mostly uncharacterized proteins containing an N-terminal domain of unknown function and a C-terminal LbH domain with similarity to THP succinyltransferase LbH. THP succinyltransferase catalyzes the conversion of tetrahydrodipicolinate and succinyl-CoA to N-succinyltetrahydrodipicolinate and CoA. It is the committed step in the succinylase pathway by which bacteria synthesize L-lysine and meso-diaminopimelate, a component of peptidoglycan. The enzyme is trimeric and displays the left-handed parallel alpha-helix (LbH) structural motif encoded by the hexapeptide repeat motif.
Probab=98.75 E-value=7.1e-08 Score=79.07 Aligned_cols=36 Identities=11% Similarity=0.307 Sum_probs=17.7
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEc----ceEEECCc
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLK----DTMMLGAD 341 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~----~~~~~~~~ 341 (422)
+.||+|++|.. .++|..+++||++|.|. ..+.++++
T Consensus 14 a~IG~GtvI~~----gavV~~~a~IG~~~iIn~~ig~~a~Ighd 53 (147)
T cd04649 14 AYLAEGTTVMH----EGFVNFNAGTLGNCMVEGRISSGVIVGKG 53 (147)
T ss_pred CEECCCcEECC----CCEEccCCEECCCeEECCcccCCEEECCC
Confidence 45555555554 44444444444444444 44444444
No 182
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.74 E-value=3.8e-08 Score=87.76 Aligned_cols=96 Identities=17% Similarity=0.228 Sum_probs=45.5
Q ss_pred CCCcccccCCCCCCcee-cCCccc-ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcC
Q 014564 278 ATKPIYTSRRNLPPSKI-DDSKIV-DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAE 355 (422)
Q Consensus 278 ~~~~~~~~~~~~~~~~~-~~~~~~-~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ 355 (422)
|.+.+...+.+.+++.+ .++.+. ++.++.+|.|.. +..+|..+.||.+|.|+.++.++.. +-..
T Consensus 113 p~a~VR~ga~i~~gtvvM~~sfVNigA~~~~gtMVd~----~as~G~~a~VGkn~higgGa~I~GV----------Lep~ 178 (271)
T COG2171 113 PGAIVRLGAYIAKGTVVMPESFVNIGAGTGEGTMVDG----RASVGSCAQVGKNSHIGGGASIGGV----------LEPL 178 (271)
T ss_pred CccEEeeccEECCCcEEcccceEEECcccCcceEEee----eeeeeccEEECCCcccCCcceEeEE----------ecCC
Confidence 44445555555555555 333333 456666666654 4444444444444444444333321 1112
Q ss_pred CCcceEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 356 GRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 356 ~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
+..|+.||+||.|. ||.+..++.+|+||++..
T Consensus 179 ~a~Pv~IgdncliGAns~~veGV~vGdg~VV~a 211 (271)
T COG2171 179 QANPVIIGDNCLIGANSEVVEGVIVGDGCVVAA 211 (271)
T ss_pred CCCCeEECCccEeccccceEeeeEeCCCcEEec
Confidence 23346666666664 454444444444444444
No 183
>COG1083 NeuA CMP-N-acetylneuraminic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=98.72 E-value=4.9e-07 Score=78.01 Aligned_cols=212 Identities=20% Similarity=0.192 Sum_probs=131.9
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
|++.-|||+|-|.++|. ..|-+.+++|+ |||.|+|+.+.+++ |++|+|-+ +.+.+.+.-++. +....
T Consensus 1 ~~~~iAiIpAR~gSKgI------~~KNi~~~~gk-pLi~~~I~aA~ns~~fd~VviSs--Ds~~Il~~A~~y---gak~~ 68 (228)
T COG1083 1 MMKNIAIIPARGGSKGI------KNKNIRKFGGK-PLIGYTIEAALNSKLFDKVVISS--DSEEILEEAKKY---GAKVF 68 (228)
T ss_pred CcceEEEEeccCCCCcC------CccchHHhCCc-chHHHHHHHHhcCCccceEEEcC--CcHHHHHHHHHh---Ccccc
Confidence 45667999999999998 67999999999 99999999999996 68877666 566666655442 22111
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHHHHcCCcEEEE
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNHRQSGADITIS 162 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~~~~~~~~tl~ 162 (422)
+.-+.....+ ...+-.++..+.+.+... .+.++++.+-. +...++++.++.+.+.+.+-.+.
T Consensus 69 -------~~Rp~~LA~D-----~ast~~~~lh~le~~~~~----~~~~~lLq~TsPLl~~~~ik~A~e~f~~~~~~sl~s 132 (228)
T COG1083 69 -------LKRPKELASD-----RASTIDAALHALESFNID----EDTLILLQPTSPLLTSLHIKEAFEKFLNNQYDSLFS 132 (228)
T ss_pred -------ccCChhhccC-----chhHHHHHHHHHHHhccc----cCeeEEeccCccccchhHHHHHHHHHhcCCCcceEE
Confidence 1111111000 113335556666555431 23477777766 45667999999998888776666
Q ss_pred EeecCCCCCcccCCceee-eccceeeeeeecCC-------CCCCceeeeeEEEEeHHHHHHHHhhhCCCCCccccchhhh
Q 014564 163 CLPMDDSEKPKGKDLKAM-AVDTTVLGLSKQEA-------EEKPYIASMGVYLFKKEILLNLLRWRFPTANDFGSEIIPA 234 (422)
Q Consensus 163 ~~~~~~~~k~~~~~~~~~-~~d~~v~~~~~k~~-------~~~~~~~~~Giy~~~~~~l~~ll~~~~~~~~~~~~~~l~~ 234 (422)
+.+.+. .|. ... ..++++..+.+.+. .+..+..++.+|+++...|.+ . ...|.
T Consensus 133 a~e~e~--~p~----k~f~~~~~~~~~~~~~~~~~~rrQ~Lpk~Y~~NgaiYi~~~~~l~e---~----~~~f~------ 193 (228)
T COG1083 133 AVECEH--HPY----KAFSLNNGEVKPVNEDPDFETRRQDLPKAYRENGAIYINKKDALLE---N----DCFFI------ 193 (228)
T ss_pred Eeeccc--chH----HHHHhcCCceeecccCCccccccccchhhhhhcCcEEEehHHHHhh---c----Cceec------
Confidence 665542 221 122 22356666655441 122456678899999987742 1 11221
Q ss_pred hcccCceeEEEec-ceEeecCCHHHHHHHHHhccC
Q 014564 235 SANEQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 235 l~~~~~i~~~~~~-~~~~di~t~~~~~~a~~~ll~ 268 (422)
.+...|.++ ...+||++..|+..+...+..
T Consensus 194 ----~~~~~y~m~~~~~~DID~~~Dl~iae~l~~~ 224 (228)
T COG1083 194 ----PNTILYEMPEDESIDIDTELDLEIAENLIFL 224 (228)
T ss_pred ----CCceEEEcCcccccccccHHhHHHHHHHhhh
Confidence 223344444 447899999999998876543
No 184
>cd03358 LbH_WxcM_N_like WcxM-like, Left-handed parallel beta-Helix (LbH) N-terminal domain: This group is composed of Xanthomonas campestris WcxM and proteins with similarity to the WcxM N-terminal domain. WcxM is thought to be bifunctional, catalyzing both the isomerization and transacetylation reactions of keto-hexoses. It contains an N-terminal LbH domain responsible for the transacetylation function and a C-terminal isomerase domain. The LbH domain contains imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), typical of enzymes with acyltransferase activity.
Probab=98.71 E-value=6.4e-08 Score=78.40 Aligned_cols=84 Identities=21% Similarity=0.306 Sum_probs=47.2
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeC------
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIID------ 374 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~------ 374 (422)
++.|+++++|+. ++.||++|.|++++.|.+.+.++.+ +.|++++.+.++.+.
T Consensus 4 ~~~I~~~~~i~~----~~~Ig~~~~I~~~~~i~~~~~Ig~~------------------~~I~~~~~i~~~~~~~~~~~~ 61 (119)
T cd03358 4 NCIIGTNVFIEN----DVKIGDNVKIQSNVSIYEGVTIEDD------------------VFIGPNVVFTNDLYPRSKIYR 61 (119)
T ss_pred CCEECCCcEECC----CcEECCCcEECCCcEEeCCeEECCC------------------cEEcCCeEEecCCCCcccccc
Confidence 355555555555 6677777777777777655555554 666666666543332
Q ss_pred ----CCcEECCCeEEccCCCcccccccCCCeEEcCC
Q 014564 375 ----KNARIGKNVIIANSEGIQEADRSAEGFYIRSG 406 (422)
Q Consensus 375 ----~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~ 406 (422)
.++.|++++.+++...+.....+++++.|+.+
T Consensus 62 ~~~~~~~~Ig~~~~Ig~~~~v~~~~~ig~~~~i~~~ 97 (119)
T cd03358 62 KWELKGTTVKRGASIGANATILPGVTIGEYALVGAG 97 (119)
T ss_pred ccccCCcEECCCcEECcCCEEeCCcEECCCCEEccC
Confidence 34556666666654444444444444444444
No 185
>COG2171 DapD Tetrahydrodipicolinate N-succinyltransferase [Amino acid transport and metabolism]
Probab=98.71 E-value=3.8e-08 Score=87.78 Aligned_cols=98 Identities=20% Similarity=0.340 Sum_probs=70.7
Q ss_pred CCCCCCceecCCcccccEEcCCCEEcc-ceee-eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeC
Q 014564 286 RRNLPPSKIDDSKIVDSIISHGSFITS-SFIE-HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIG 363 (422)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~v~-~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 363 (422)
+++.|++.+.. .++|++|++++. +.|+ ++.+++++-|..+++++.++.+|.+ +.||
T Consensus 109 ~RI~p~a~VR~----ga~i~~gtvvM~~sfVNigA~~~~gtMVd~~as~G~~a~VGkn------------------~hig 166 (271)
T COG2171 109 VRIVPGAIVRL----GAYIAKGTVVMPESFVNIGAGTGEGTMVDGRASVGSCAQVGKN------------------SHIG 166 (271)
T ss_pred eeecCccEEee----ccEECCCcEEcccceEEECcccCcceEEeeeeeeeccEEECCC------------------cccC
Confidence 56666655522 489999999985 6665 8899999999999999999999887 8888
Q ss_pred CCcEE---------eeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcC
Q 014564 364 ENTKI---------KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRS 405 (422)
Q Consensus 364 ~~~~i---------~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~ 405 (422)
-++.| .-++|++||.||+|+.+..+..+.+.+++.-++||..
T Consensus 167 gGa~I~GVLep~~a~Pv~IgdncliGAns~~veGV~vGdg~VV~aGv~I~~ 217 (271)
T COG2171 167 GGASIGGVLEPLQANPVIIGDNCLIGANSEVVEGVIVGDGCVVAAGVFITQ 217 (271)
T ss_pred CcceEeEEecCCCCCCeEECCccEeccccceEeeeEeCCCcEEecceEEeC
Confidence 88888 2378899999999976665433333333333333333
No 186
>cd05824 LbH_M1P_guanylylT_C Mannose-1-phosphate guanylyltransferase, C-terminal Left-handed parallel beta helix (LbH) domain: Mannose-1-phosphate guanylyltransferase is also known as GDP-mannose pyrophosphorylase. It catalyzes the synthesis of GDP-mannose from GTP and mannose-1-phosphate, and is involved in the maintenance of cell wall integrity and glycosylation. Similar to ADP-glucose pyrophosphorylase, it contains an N-terminal catalytic domain that resembles a dinucleotide-binding Rossmann fold and a C-terminal LbH fold domain, presumably with 4 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.70 E-value=1.3e-07 Score=70.75 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=51.6
Q ss_pred ccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEee-eEeCCCcE
Q 014564 301 DSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNAR 378 (422)
Q Consensus 301 ~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~i~~~~~ 378 (422)
++.|+++|.|+ ++.+.+|+++++++|++++.|.++++..+ +.|++++.+.+ +++|++++
T Consensus 17 ~~~Ig~~~~Ig~~~~i~~sii~~~~~i~~~~~i~~sii~~~-------------------~~v~~~~~~~~~~~ig~~~~ 77 (80)
T cd05824 17 NVVIGPNVTIGDGVRLQRCVILSNSTVRDHSWVKSSIVGWN-------------------STVGRWTRLENVTVLGDDVT 77 (80)
T ss_pred CCEECCCCEECCCcEEeeeEEcCCCEECCCCEEeCCEEeCC-------------------CEECCCcEEecCEEECCceE
Confidence 57888888887 46778999999999999999999877655 89999999986 88888877
Q ss_pred ECC
Q 014564 379 IGK 381 (422)
Q Consensus 379 i~~ 381 (422)
|+.
T Consensus 78 i~~ 80 (80)
T cd05824 78 IKD 80 (80)
T ss_pred ECC
Confidence 763
No 187
>PLN02694 serine O-acetyltransferase
Probab=98.69 E-value=5.8e-08 Score=88.99 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=16.9
Q ss_pred eeEEcCCcEECCCCEEcceEEECC
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGA 340 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~ 340 (422)
.++||++|.||++|.|..++.+|+
T Consensus 180 GVVIGe~a~IGdnv~I~~~VtLGg 203 (294)
T PLN02694 180 GVVIGETAVIGNNVSILHHVTLGG 203 (294)
T ss_pred CeEECCCcEECCCCEEeecceeCC
Confidence 467777777777777777777665
No 188
>KOG1462 consensus Translation initiation factor 2B, gamma subunit (eIF-2Bgamma/GCD1) [Translation, ribosomal structure and biogenesis]
Probab=98.66 E-value=5.7e-08 Score=90.49 Aligned_cols=118 Identities=14% Similarity=0.144 Sum_probs=89.2
Q ss_pred ceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccccCCCCCCcee-cCCcccccEEcCCCEEc-cceeeeeEEcCCcE
Q 014564 248 DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYTSRRNLPPSKI-DDSKIVDSIISHGSFIT-SSFIEHSVVGIRSR 325 (422)
Q Consensus 248 ~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~ 325 (422)
+.+++++.++-+.....+- .+........+.+.....+++++.+ +++.+..++||++|.|+ .+.|.+|.+-+|++
T Consensus 300 ~~y~eiN~~k~~~~l~~e~---~~~k~~~~~~~l~g~d~iv~~~t~i~~~s~ik~SviG~nC~Ig~~~~v~nSilm~nV~ 376 (433)
T KOG1462|consen 300 LSYMEINRDKKLKKLCSEA---KFVKNYVKKVALVGADSIVGDNTQIGENSNIKRSVIGSNCDIGERVKVANSILMDNVV 376 (433)
T ss_pred HHHHhhhHHHHHHHhcccc---ccccchhhheeccchhhccCCCceecccceeeeeeecCCccccCCcEEEeeEeecCcE
Confidence 4577888654444443221 1111222222444556677788888 57888899999999999 57889999999999
Q ss_pred ECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEcc
Q 014564 326 INANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 326 i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
||+++.|++|++..+ +.||++|.+.||+||++=+|.+..+..+
T Consensus 377 vg~G~~IensIIg~g-------------------A~Ig~gs~L~nC~Ig~~yvVeak~~~~~ 419 (433)
T KOG1462|consen 377 VGDGVNIENSIIGMG-------------------AQIGSGSKLKNCIIGPGYVVEAKGKHGG 419 (433)
T ss_pred ecCCcceecceeccc-------------------ceecCCCeeeeeEecCCcEEcccccccc
Confidence 999999999988665 8999999999999999999998766654
No 189
>cd03359 LbH_Dynactin_5 Dynactin 5 (or subunit p25); Dynactin is a major component of the activator complex that stimulates dynein-mediated vesicle transport. Dynactin is a heterocomplex of at least eight subunits, including a 150,000-MW protein called Glued, the actin-capping protein Arp1, and dynamatin. In vitro binding experiments show that dynactin enhances dynein-dependent motility, possibly through interaction with microtubules and vesicles. Subunit p25 is part of the pointed-end subcomplex in dynactin that also includes p26, p27, and Arp11. This subcomplex interacts with membranous cargoes. p25 and p27 contain imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X), indicating a left-handed parallel beta helix (LbH) structural domain. Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity.
Probab=98.66 E-value=1.6e-07 Score=80.38 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=22.7
Q ss_pred ccEEcCCCEEccceeeeeEEcC---CcEECCCCEEcceEEECC
Q 014564 301 DSIISHGSFITSSFIEHSVVGI---RSRINANVHLKDTMMLGA 340 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~---~~~i~~~~~i~~~~~~~~ 340 (422)
+..|++++.|++ ++.|.. .++||++|.|++.+.+..
T Consensus 21 ~I~ig~~~~I~~----~~~I~g~~~~v~IG~~~~I~~~~~I~~ 59 (161)
T cd03359 21 NIVLNGKTIIQS----DVIIRGDLATVSIGRYCILSEGCVIRP 59 (161)
T ss_pred CEEECCceEEcC----CCEEeCCCcceEECCCcEECCCCEEeC
Confidence 466777777775 333333 357777777777666654
No 190
>PRK10502 putative acyl transferase; Provisional
Probab=98.65 E-value=1.2e-07 Score=82.70 Aligned_cols=18 Identities=22% Similarity=0.281 Sum_probs=12.4
Q ss_pred eeEEcCCcEECCCCEEcc
Q 014564 317 HSVVGIRSRINANVHLKD 334 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~ 334 (422)
+..||+++.|++++.|.+
T Consensus 71 ~~~IG~~~~Ig~~~~I~~ 88 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYN 88 (182)
T ss_pred eEEECCCeEECCCceecc
Confidence 466777777777777753
No 191
>TIGR03536 DapD_gpp 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase (DapD) is involved in the succinylated branch of the "lysine biosynthesis via diaminopimelate (DAP)" pathway (GenProp0125). This model represents a clade of DapD sequences most closely related to the actinobacterial DapD family represented by the TIGR03535 model. All of the genes evaluated for the seed of this model are found in genomes where the downstream desuccinylase is present, but known DapD genes are absent. Additionally, many of the genes identified by this model are found proximal to genes involved in this lysine biosynthesis pathway.
Probab=98.62 E-value=3.7e-07 Score=83.73 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=8.5
Q ss_pred eeEEcCCcEECCCCEE
Q 014564 317 HSVVGIRSRINANVHL 332 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i 332 (422)
.++||.+|.||.+|.|
T Consensus 224 GavIGhds~IG~gasI 239 (341)
T TIGR03536 224 GVMVGKGSDLGGGCST 239 (341)
T ss_pred CCEECCCCEECCCCEE
Confidence 4455555555555555
No 192
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.61 E-value=2.7e-08 Score=91.16 Aligned_cols=80 Identities=20% Similarity=0.244 Sum_probs=42.8
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 379 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i 379 (422)
.+.||+++.|+... ..+||++|+||++|.|..++.+|++... .+.....||++|.|. +|.|..+++|
T Consensus 147 ~a~IG~g~~I~h~~--givIG~~a~IGdnv~I~~~VtiGg~~~~----------~~~~~p~IGd~V~IGaga~Ilggv~I 214 (273)
T PRK11132 147 AAKIGRGIMLDHAT--GIVIGETAVIENDVSILQSVTLGGTGKT----------SGDRHPKIREGVMIGAGAKILGNIEV 214 (273)
T ss_pred cceECCCeEEcCCC--CeEECCCCEECCCCEEcCCcEEecCccc----------CCCcCCEECCCcEEcCCCEEcCCCEE
Confidence 35556666655311 3577777777777777777766642000 000003556666664 4555555555
Q ss_pred CCCeEEccCCCcc
Q 014564 380 GKNVIIANSEGIQ 392 (422)
Q Consensus 380 ~~~~~i~~~~~~~ 392 (422)
|+|++|+.++.+.
T Consensus 215 G~~a~IGAgSvV~ 227 (273)
T PRK11132 215 GRGAKIGAGSVVL 227 (273)
T ss_pred CCCCEECCCCEEC
Confidence 5555555544443
No 193
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.59 E-value=2.8e-07 Score=68.27 Aligned_cols=19 Identities=16% Similarity=0.212 Sum_probs=10.9
Q ss_pred eeEEcCCcEECCCCEEcce
Q 014564 317 HSVVGIRSRINANVHLKDT 335 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~ 335 (422)
++.||+++.|++++.|.++
T Consensus 18 ~~~Ig~~~~I~~~~~i~~~ 36 (78)
T cd00208 18 PVVIGDNVNIGPGAVIGAA 36 (78)
T ss_pred cEEECCCCEECCCCEEEec
Confidence 4556666666666655544
No 194
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.57 E-value=2.2e-07 Score=79.23 Aligned_cols=13 Identities=38% Similarity=0.417 Sum_probs=6.6
Q ss_pred EcCCceecCCccC
Q 014564 410 ILKNSVITDGFVI 422 (422)
Q Consensus 410 ig~~~~i~~g~~i 422 (422)
||+|+.|||||||
T Consensus 140 IGd~akIGA~sVV 152 (194)
T COG1045 140 IGDNAKIGAGSVV 152 (194)
T ss_pred ECCCCEECCCceE
Confidence 4455555555543
No 195
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.56 E-value=2.9e-07 Score=81.24 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=15.6
Q ss_pred eeEEcCCcEECCCCEEcc--eEEECCc
Q 014564 317 HSVVGIRSRINANVHLKD--TMMLGAD 341 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~--~~~~~~~ 341 (422)
+..||+++.|+.+|.|.+ .+.+|++
T Consensus 75 ni~IG~~v~In~~~~I~d~~~I~IGd~ 101 (203)
T PRK09527 75 NIHIGRNFYANFNLTIVDDYTVTIGDN 101 (203)
T ss_pred CcEEcCCcEECCCcEEecCCCEEECCC
Confidence 566777777777776633 3555554
No 196
>PLN02474 UTP--glucose-1-phosphate uridylyltransferase
Probab=98.55 E-value=1.1e-05 Score=79.57 Aligned_cols=344 Identities=14% Similarity=0.128 Sum_probs=174.1
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC-Ccceeehhhhhhhhhc----CC-cEEEEEeecCh-HHHHHHHHhhccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYNS-ASLNRHLARAYNY 79 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~-gk~pli~~~l~~l~~~----gi-~~i~Iv~~~~~-~~i~~~l~~~~~~ 79 (422)
.++-+|.||||.||||+ ...||.++|+. |+ ++++.+++++... |. =..+|.++... ++..++++++-.+
T Consensus 78 ~k~avlkLnGGlGTrmG---~~~PKs~i~v~~~~-sfldl~~~qi~~l~~~~g~~vPl~iMtS~~T~~~T~~~l~k~~~~ 153 (469)
T PLN02474 78 DKLVVLKLNGGLGTTMG---CTGPKSVIEVRNGL-TFLDLIVIQIENLNKKYGCNVPLLLMNSFNTHDDTQKIVEKYTNS 153 (469)
T ss_pred hcEEEEEecCCcccccC---CCCCceeEEcCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCchhHHHHHHHHHcCCC
Confidence 46779999999999997 67899999995 57 8999888887653 32 23455666554 6688888763212
Q ss_pred CCCcc-cCCCeEEEeccCC-CCCc-CC-----cccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcCCeeeecChHHHH
Q 014564 80 GSGVT-FGDGCVEVLAATQ-TPGE-AG-----KRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMDFV 149 (422)
Q Consensus 80 ~~~~~-~~~~~v~i~~~~~-~~~~-~~-----~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll 149 (422)
..... |.+..+.-+..+. .+-+ .+ .-.+.|.++....... .++++.....+.+.+.+.|.+...-=..++
T Consensus 154 ~~~i~~F~Q~~~P~l~~~~~~p~~~~~~~~~~~~~P~GhGd~y~aL~~sG~Ld~l~~~G~eyifv~nvDNLga~vDp~~l 233 (469)
T PLN02474 154 NIEIHTFNQSQYPRVVADDFVPWPSKGKTDKDGWYPPGHGDVFPSLMNSGKLDALLSQGKEYVFIANSDNLGAIVDLKIL 233 (469)
T ss_pred ccceEEEecCceeeEecCCCCcccccCCCCcceeeeCCCchHHHHHHhCChHHHHHhcCCEEEEEEecCccccccCHHHH
Confidence 11111 1111000000000 0000 00 0123355544433221 111111134689999999996432213477
Q ss_pred HHHHHcCCcEEEEEeecCCCCCcccCCceeeeccce--eeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHHhh
Q 014564 150 QNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT--VLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLLRW 219 (422)
Q Consensus 150 ~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~--v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll~~ 219 (422)
..+..+++++++=+.+... +...+-.....+++ +.++.+=|.+ ....+.+++.+.|+..+++++++.
T Consensus 234 g~~~~~~~e~~~ev~~Kt~---~d~kgG~l~~~dgk~~lvEysqvp~e~~~~f~~~~kf~~fNtnn~w~~L~~l~~~~~~ 310 (469)
T PLN02474 234 NHLIQNKNEYCMEVTPKTL---ADVKGGTLISYEGKVQLLEIAQVPDEHVNEFKSIEKFKIFNTNNLWVNLKAIKRLVEA 310 (469)
T ss_pred HHHHhcCCceEEEEeecCC---CCCCccEEEEECCEEEEEEEecCCHHHHHhhcccccceeeeeeeEEEEHHHHHHHhhc
Confidence 7788888888776554332 11111112234554 6666543321 124577899999999988877653
Q ss_pred hCCCC------C--c---c--ccchhhhhccc-CceeEEEec-ceEeecCCHHHHHHHHHhccCCCCCccccCCCCcccc
Q 014564 220 RFPTA------N--D---F--GSEIIPASANE-QFLKAYLFN-DYWEDIGTIRSFFEANLALTAHPPMFSFYDATKPIYT 284 (422)
Q Consensus 220 ~~~~~------~--~---~--~~~~l~~l~~~-~~i~~~~~~-~~~~di~t~~~~~~a~~~ll~~~~~~~~~~~~~~~~~ 284 (422)
..... . + . .+.++-++++- .+..++... ..|..+.+..+++.+...+.....+.....+......
T Consensus 311 ~~l~~~~I~n~k~~~g~kv~q~Et~ig~ai~~f~~~~~v~VpR~rF~PVK~~~dll~~rsdly~l~~~~l~~~~~~~~~~ 390 (469)
T PLN02474 311 DALKMEIIPNPKEVDGVKVLQLETAAGAAIRFFDNAIGINVPRSRFLPVKATSDLLLVQSDLYTLVDGFVIRNKARTNPS 390 (469)
T ss_pred CCCCceeecCCCCCCCeeEEEeHHHHHHHHHhCCCceEEEEchhhccCCCCCCCHHHHHHHHHHhccCeEEecCcccCCC
Confidence 11000 0 0 0 00011111111 222333332 2477788888888888776554322111111111111
Q ss_pred c--CCCCCCceecCCcccccEE-cCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceE
Q 014564 285 S--RRNLPPSKIDDSKIVDSII-SHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVG 361 (422)
Q Consensus 285 ~--~~~~~~~~~~~~~~~~~~i-~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (422)
. ..+.|....-+ .. ...+ +--..++ ..+-.|-.+++.|+++++.+.+++-++ +|. +..
T Consensus 391 ~p~IeL~~~f~~v~-~f-~~rf~~iPsl~~---~d~LtV~Gdv~fG~~v~l~G~v~i~~~-------------~~~-~~~ 451 (469)
T PLN02474 391 NPSIELGPEFKKVA-NF-LSRFKSIPSIVE---LDSLKVSGDVWFGSGIVLKGKVTITAK-------------SGV-KLE 451 (469)
T ss_pred CCcEEECcccccHH-hH-HHhcCCCCCccc---CCeEEEeeeeEECCCcEEEEEEEEEcC-------------CCC-eee
Confidence 1 12222110000 00 0000 1111111 114566678899999999999888763 111 157
Q ss_pred eCCCcEEeeeEeCCC
Q 014564 362 IGENTKIKECIIDKN 376 (422)
Q Consensus 362 i~~~~~i~~~~i~~~ 376 (422)
|.+|+++.+.++-.+
T Consensus 452 ip~g~~l~~~~~~~~ 466 (469)
T PLN02474 452 IPDGAVLENKDINGP 466 (469)
T ss_pred cCCCcEecceeeccc
Confidence 888888877666544
No 197
>PRK05293 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.55 E-value=2e-07 Score=91.56 Aligned_cols=91 Identities=18% Similarity=0.288 Sum_probs=71.0
Q ss_pred ccCCCCcccccCCCCCCceecCCcccccEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhh
Q 014564 275 FYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 353 (422)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 353 (422)
++++++.+ ..+.+++++.+.+ .+.++.|+++|.|+ ++.+.+|+|+++|+|+++|+|.++++..+
T Consensus 284 ~i~~~~~i-~~~~Ig~~~~I~~-~v~~s~ig~~~~I~~~~~i~~svi~~~~~i~~~~~i~~~ii~~~------------- 348 (380)
T PRK05293 284 YIAENAKV-KNSLVVEGCVVYG-TVEHSVLFQGVQVGEGSVVKDSVIMPGAKIGENVVIERAIIGEN------------- 348 (380)
T ss_pred EECCCCEE-ecCEECCCCEEcc-eecceEEcCCCEECCCCEEECCEEeCCCEECCCeEEeEEEECCC-------------
Confidence 44455555 2344555555532 35579999999998 56889999999999999999999777554
Q ss_pred cCCCcceEeCCCcEEee-----eEeCCCcEECCCeEEc
Q 014564 354 AEGRVPVGIGENTKIKE-----CIIDKNARIGKNVIIA 386 (422)
Q Consensus 354 ~~~~~~~~i~~~~~i~~-----~~i~~~~~i~~~~~i~ 386 (422)
+.|++++.+.+ .+||++++|+++++|+
T Consensus 349 ------~~i~~~~~i~~~~~~~~~ig~~~~~~~~~~~~ 380 (380)
T PRK05293 349 ------AVIGDGVIIGGGKEVITVIGENEVIGVGTVIG 380 (380)
T ss_pred ------CEECCCCEEcCCCceeEEEeCCCCCCCCcEeC
Confidence 89999999986 8899999998888764
No 198
>cd00208 LbetaH Left-handed parallel beta-Helix (LbetaH or LbH) domain: The alignment contains 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity, however, some subfamilies in this hierarchy also show activities related to ion transport or translation initiation. Many are trimeric in their active forms.
Probab=98.54 E-value=5.2e-07 Score=66.85 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=15.6
Q ss_pred EEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEEC
Q 014564 303 IISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLG 339 (422)
Q Consensus 303 ~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~ 339 (422)
.|++++.|+. ++.|++++.||+++.|.+.+.++
T Consensus 2 ~ig~~~~i~~----~~~i~~~~~Ig~~~~I~~~~~i~ 34 (78)
T cd00208 2 FIGEGVKIHP----KAVIRGPVVIGDNVNIGPGAVIG 34 (78)
T ss_pred EECCCeEECC----CCEEeCcEEECCCCEECCCCEEE
Confidence 3444444444 44444445555555554444443
No 199
>TIGR02092 glgD glucose-1-phosphate adenylyltransferase, GlgD subunit. This family is GlgD, an apparent regulatory protein that appears in an alpha2/beta2 heterotetramer with GlgC (glucose-1-phosphate adenylyltransferase, TIGR02091) in a subset of bacteria that use GlgC for glycogen biosynthesis.
Probab=98.53 E-value=3.1e-07 Score=89.79 Aligned_cols=61 Identities=25% Similarity=0.421 Sum_probs=52.3
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
+++|+++|.| .+|+||++|+|+ +.|++|+++.+ |.|+++|.|.+|+++++|.|+
T Consensus 278 p~~i~~~~~i-----~~~~Ig~~~~i~--~~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~I~ 331 (369)
T TIGR02092 278 PTYYAENSKV-----ENSLVANGCIIE--GKVENSILSRG-------------------VHVGKDALIKNCIIMQRTVIG 331 (369)
T ss_pred CcEEcCCCEE-----EEeEEcCCCEEe--eEEeCCEECCC-------------------CEECCCCEEEeeEEeCCCEEC
Confidence 5667776665 489999999997 46889888765 999999999999999999999
Q ss_pred CCeEEcc
Q 014564 381 KNVIIAN 387 (422)
Q Consensus 381 ~~~~i~~ 387 (422)
+++.+.+
T Consensus 332 ~~~~i~~ 338 (369)
T TIGR02092 332 EGAHLEN 338 (369)
T ss_pred CCCEEEE
Confidence 9999875
No 200
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.53 E-value=6.6e-07 Score=78.85 Aligned_cols=41 Identities=17% Similarity=0.215 Sum_probs=24.2
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEc--ceEEECCc
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLK--DTMMLGAD 341 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~--~~~~~~~~ 341 (422)
++.++.+|.+.....-...||+++.|++++.|. ..+.+|++
T Consensus 49 ~v~i~~~~ri~~~~~~~i~IG~~v~Ig~~v~I~~~~~v~IG~~ 91 (192)
T PRK09677 49 GFTSGVGLRLDAFGRGKLFFGDNVQVNDYVHIACIESITIGRD 91 (192)
T ss_pred ceEECCCeEEEecCCCeEEECCCCEECCCcEEccCceEEECCC
Confidence 455666665531111246777777777777775 35566665
No 201
>PRK02862 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.50 E-value=4.2e-07 Score=90.51 Aligned_cols=100 Identities=17% Similarity=0.150 Sum_probs=72.9
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCC------
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK------ 375 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~------ 375 (422)
+.+.+.+.+.++.+.+|.||++|+| +++.|+++++.++ |.||++|.|.+|+|+.
T Consensus 293 ~~~~~~a~~~~~~~~~~~ig~~~~i-~~~~i~~svi~~~-------------------~~Ig~~~~i~~svi~~~~~~p~ 352 (429)
T PRK02862 293 ARYLPPSKLLDATITESIIAEGCII-KNCSIHHSVLGIR-------------------SRIESGCTIEDTLVMGADFYES 352 (429)
T ss_pred CCCCCCccccccEEEeCEECCCCEE-CCcEEEEEEEeCC-------------------cEECCCCEEEeeEEecCccccc
Confidence 3344555555566778999999999 8999998766554 9999999999999975
Q ss_pred -------------CcEECCCeEEccCCCcccccccCCCeEEcCCe-----------EEEcCC-ceecCCccC
Q 014564 376 -------------NARIGKNVIIANSEGIQEADRSAEGFYIRSGV-----------TVILKN-SVITDGFVI 422 (422)
Q Consensus 376 -------------~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~-----------~~ig~~-~~i~~g~~i 422 (422)
++.||++|.|.+ ..+.+.+.|++++.|..+. .+|+.+ +.|+.++++
T Consensus 353 ~~~~~~~~~~~~~~~~Ig~~~~i~~-~ii~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (429)
T PRK02862 353 SEEREELRKEGKPPLGIGEGTTIKR-AIIDKNARIGNNVRIVNKDNVEEADREDQGFYIRDGIVVVVKNAVI 423 (429)
T ss_pred ccccccccccCCcccEECCCCEEEE-EEECCCcEECCCcEEecCCCcccccccccceEeeCCEEEEcCCcCC
Confidence 799999999976 4555666777777774332 234555 556666553
No 202
>PTZ00339 UDP-N-acetylglucosamine pyrophosphorylase; Provisional
Probab=98.50 E-value=5.3e-06 Score=82.34 Aligned_cols=205 Identities=18% Similarity=0.188 Sum_probs=112.3
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC---Ccceeehhhhhhhhhc-------------CCcEEEEEee-cChHHH
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS-------------GINKVYILTQ-YNSASL 69 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~~-------------gi~~i~Iv~~-~~~~~i 69 (422)
.++.+||||||.||||+ ...||+|+||+ |+ |+++++++++... ..-.++|+++ +..+.+
T Consensus 105 gkvavViLAGG~GTRLg---~~~PK~ll~I~~~~gk-sL~q~~~erI~~l~~~~~~~~~~~~~~~Ip~~IMTS~~t~~~t 180 (482)
T PTZ00339 105 GEVAVLILAGGLGTRLG---SDKPKGLLECTPVKKK-TLFQFHCEKVRRLEEMAVAVSGGGDDPTIYILVLTSSFNHDQT 180 (482)
T ss_pred CCeEEEEECCCCcCcCC---CCCCCeEeeecCCCCc-cHHHHHHHHHHHHhhhhhcccccccCCCCCEEEEeCcchHHHH
Confidence 46899999999999996 67999999994 89 9999999999874 1124555554 666888
Q ss_pred HHHHHhhccCCCCcc----cCCCeEEEeccC-CC----CCcCCcccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcCC
Q 014564 70 NRHLARAYNYGSGVT----FGDGCVEVLAAT-QT----PGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGD 138 (422)
Q Consensus 70 ~~~l~~~~~~~~~~~----~~~~~v~i~~~~-~~----~~~~~~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~gD 138 (422)
+++++++..|+.... |.+..+..+... .. ....-...+.|.++....... .++++....-+.+.+...|
T Consensus 181 ~~~f~~~~~FGl~~~~V~~F~Q~~~P~i~~~~g~ill~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~vD 260 (482)
T PTZ00339 181 RQFLEENNFFGLDKEQVIFFKQSSLPCYDENTGRFIMSSQGSLCTAPGGNGDVFKALAKCSELMDIVRKGIKYVQVISID 260 (482)
T ss_pred HHHHHhccccCCCcccEEEEecCCcceEecCCCCcccCCCCceeeCCCCCcHHHHHHHHCCcHHHHHHcCCEEEEEEecC
Confidence 999976432332210 111111111100 00 000011223466655554321 1222222335789999999
Q ss_pred eeee-cChHHHHHHHHHcCC-cEEEEEeecCCCCCcccCCceeeeccc-eeeeeeecC---C--------CCCCceeeee
Q 014564 139 HLYR-MDYMDFVQNHRQSGA-DITISCLPMDDSEKPKGKDLKAMAVDT-TVLGLSKQE---A--------EEKPYIASMG 204 (422)
Q Consensus 139 ~i~~-~~l~~ll~~~~~~~~-~~tl~~~~~~~~~k~~~~~~~~~~~d~-~v~~~~~k~---~--------~~~~~~~~~G 204 (422)
.+.. ..=..++-.+...++ ++.-.+.+..+.|+ -+.+...... .+.++.+=+ . .......++.
T Consensus 261 N~L~k~~DP~flG~~~~~~~~~~~~kvvk~~~~Ek---vG~~~~~~g~~~vvEYsEi~~~~~~~~~~~~g~l~f~~gnI~ 337 (482)
T PTZ00339 261 NILAKVLDPEFIGLASSFPAHDVLNKCVKREDDES---VGVFCLKDYEWQVVEYTEINERILNNDELLTGELAFNYGNIC 337 (482)
T ss_pred cccccccCHHHhHHHHHCCchhheeeeecCCCCCc---eeEEEEeCCcccEEEEeccChhhhhcccccCCeecccccceE
Confidence 9643 222346666666666 55433333333221 1222221212 455554321 1 0112445778
Q ss_pred EEEEeHHHHHHHHh
Q 014564 205 VYLFKKEILLNLLR 218 (422)
Q Consensus 205 iy~~~~~~l~~ll~ 218 (422)
.++|+.+++.++.+
T Consensus 338 ~h~fsl~fl~~~~~ 351 (482)
T PTZ00339 338 SHIFSLDFLKKVAA 351 (482)
T ss_pred EEEEEHHHHHHHhh
Confidence 99999998887653
No 203
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.48 E-value=7e-07 Score=70.04 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=10.5
Q ss_pred EeeeEeCCCcEECCCeEEc
Q 014564 368 IKECIIDKNARIGKNVIIA 386 (422)
Q Consensus 368 i~~~~i~~~~~i~~~~~i~ 386 (422)
+..++|+++|.|+.++.+.
T Consensus 52 ~~~~~Ig~~~~Ig~~~~i~ 70 (101)
T cd03354 52 KRHPTIGDNVVIGAGAKIL 70 (101)
T ss_pred CCCCEECCCcEEcCCCEEE
Confidence 3455555555555555554
No 204
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=98.47 E-value=4.2e-07 Score=72.54 Aligned_cols=98 Identities=17% Similarity=0.256 Sum_probs=68.3
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcce------------EEECCccccchhhHHhhhcCCCcceEeCCCcEE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDT------------MMLGADFYETDAEVASLLAEGRVPVGIGENTKI 368 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i 368 (422)
.++|..|++|.+ .+.+..+|..|.++..+.|++. +.+|++ +.|+++|++
T Consensus 39 KtIv~~g~iIRG-DLAnVr~GryCV~ksrsvIRPp~K~FSKg~affp~hiGdh------------------VFieE~cVV 99 (184)
T KOG3121|consen 39 KTIVEEGVIIRG-DLANVRIGRYCVLKSRSVIRPPMKIFSKGPAFFPVHIGDH------------------VFIEEECVV 99 (184)
T ss_pred cEEEeeCcEEec-ccccceEcceEEeccccccCCchHHhcCCceeeeeeecce------------------EEEecceEe
Confidence 578888888875 4446677777777777777553 334544 677777777
Q ss_pred eeeEeCCCcEECCCeEEccCCCcccccccCCCeEEcCCeEEEcCCceecC
Q 014564 369 KECIIDKNARIGKNVIIANSEGIQEADRSAEGFYIRSGVTVILKNSVITD 418 (422)
Q Consensus 369 ~~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~ig~~~~i~~ 418 (422)
.-+.||..+.+|++++|++...+.+.++|.+++++...+++ .+-+++++
T Consensus 100 nAAqIgsyVh~GknaviGrrCVlkdCc~ild~tVlPpet~v-ppy~~~~g 148 (184)
T KOG3121|consen 100 NAAQIGSYVHLGKNAVIGRRCVLKDCCRILDDTVLPPETLV-PPYSTIGG 148 (184)
T ss_pred ehhhheeeeEeccceeEcCceEhhhheeccCCcccCccccc-CCceEEcC
Confidence 77778888888888888887777777788877777666433 44444443
No 205
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.47 E-value=5.4e-07 Score=77.07 Aligned_cols=22 Identities=27% Similarity=0.445 Sum_probs=11.2
Q ss_pred eEEcCCcEECCCCEEcceEEEC
Q 014564 318 SVVGIRSRINANVHLKDTMMLG 339 (422)
Q Consensus 318 s~ig~~~~i~~~~~i~~~~~~~ 339 (422)
++||+++.||++|.|.+++.++
T Consensus 82 ~~Ig~~~~IG~~~~I~~~v~ig 103 (162)
T TIGR01172 82 VVIGETAVIGDDVTIYHGVTLG 103 (162)
T ss_pred EEECCCCEECCCCEEcCCCEEC
Confidence 4455555555555555554444
No 206
>PLN02357 serine acetyltransferase
Probab=98.46 E-value=6e-07 Score=84.74 Aligned_cols=23 Identities=26% Similarity=0.468 Sum_probs=12.4
Q ss_pred eEEcCCcEECCCCEEcceEEECC
Q 014564 318 SVVGIRSRINANVHLKDTMMLGA 340 (422)
Q Consensus 318 s~ig~~~~i~~~~~i~~~~~~~~ 340 (422)
++||++++||++|.|..++.+|+
T Consensus 247 iVIGe~avIGdnV~I~~gVtIGg 269 (360)
T PLN02357 247 VVIGETAVVGNNVSILHNVTLGG 269 (360)
T ss_pred eEECCCCEECCCCEEeCCceecC
Confidence 45555555555555555555543
No 207
>PRK10191 putative acyl transferase; Provisional
Probab=98.45 E-value=1.8e-06 Score=72.01 Aligned_cols=27 Identities=26% Similarity=0.481 Sum_probs=12.0
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIA 386 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 386 (422)
+.||.++.+. ++.||+++.||+++++.
T Consensus 99 ~~Ig~~~~I~~~v~IG~~~~Igags~V~ 126 (146)
T PRK10191 99 VELGANVIILGDITIGNNVTVGAGSVVL 126 (146)
T ss_pred cEEcCCCEEeCCCEECCCCEECCCCEEC
Confidence 4444444443 24444444444444443
No 208
>TIGR02091 glgC glucose-1-phosphate adenylyltransferase. This enzyme, glucose-1-phosphate adenylyltransferase, is also called ADP-glucose pyrophosphorylase. The plant form is an alpha2,beta2 heterodimer, allosterically regulated in plants. Both subunits are homologous and included in this model. In bacteria, both homomeric forms of GlgC and more active heterodimers of GlgC and GlgD have been described. This model describes the GlgC subunit only. This enzyme appears in variants of glycogen synthesis pathways that use ADP-glucose, rather than UDP-glucose as in animals.
Probab=98.45 E-value=6.5e-07 Score=87.30 Aligned_cols=63 Identities=21% Similarity=0.360 Sum_probs=50.0
Q ss_pred cCCCEEccc-eeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCe
Q 014564 305 SHGSFITSS-FIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 383 (422)
Q Consensus 305 ~~~~~i~~~-~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~ 383 (422)
.+.++|++. .+.+|.||++|+|+.+ +|+++++..+ |.|+++|.|.+|++++++.||+++
T Consensus 281 ~~~~~i~~~~~i~~~~ig~~~~I~~~-~v~~s~i~~~-------------------~~I~~~~~i~~sii~~~~~v~~~~ 340 (361)
T TIGR02091 281 PPAKFVDSDAQVVDSLVSEGCIISGA-TVSHSVLGIR-------------------VRIGSGSTVEDSVIMGDVGIGRGA 340 (361)
T ss_pred CCceEecCCCEEECCEECCCCEECCC-EEEccEECCC-------------------CEECCCCEEeeeEEeCCCEECCCC
Confidence 334444432 4457899999999976 8887776554 999999999999999999999999
Q ss_pred EEcc
Q 014564 384 IIAN 387 (422)
Q Consensus 384 ~i~~ 387 (422)
.+.+
T Consensus 341 ~l~~ 344 (361)
T TIGR02091 341 VIRN 344 (361)
T ss_pred EEee
Confidence 8864
No 209
>PRK09527 lacA galactoside O-acetyltransferase; Reviewed
Probab=98.45 E-value=1.9e-06 Score=76.03 Aligned_cols=102 Identities=22% Similarity=0.233 Sum_probs=56.1
Q ss_pred cccCCCCCCceec-CCcccccEEcCCCEEcc-cee---eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCC
Q 014564 283 YTSRRNLPPSKID-DSKIVDSIISHGSFITS-SFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGR 357 (422)
Q Consensus 283 ~~~~~~~~~~~~~-~~~~~~~~i~~~~~i~~-~~v---~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (422)
..++.+.+|..+. +. ++.||+++.|.. +.+ .+..||++|.|+++|.|... + ++.... ...-...-.
T Consensus 59 g~~~~I~~~~~~~~g~---ni~IG~~v~In~~~~I~d~~~I~IGd~v~Ig~~v~I~~~---~-h~~~~~--~r~~g~~~~ 129 (203)
T PRK09527 59 GENAWVEPPVYFSYGS---NIHIGRNFYANFNLTIVDDYTVTIGDNVLIAPNVTLSVT---G-HPVHHE--LRKNGEMYS 129 (203)
T ss_pred CCCcEEcCCEEEeeCC---CcEEcCCcEECCCcEEecCCCEEECCCCEECCCCEEEeC---C-CCCChh--hcccccccc
Confidence 3445556666652 21 566777777763 333 13677777777777777532 1 100000 000000001
Q ss_pred cceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCccc
Q 014564 358 VPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 393 (422)
Q Consensus 358 ~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~ 393 (422)
.++.||++|+|. +|+|.++++||++++|+.++.+.+
T Consensus 130 ~pi~IGd~v~IG~~~~I~~gv~IG~~~vIgagsvV~k 166 (203)
T PRK09527 130 FPITIGNNVWIGSHVVINPGVTIGDNSVIGAGSVVTK 166 (203)
T ss_pred CCeEECCCcEECCCCEEcCCCEECCCCEECCCCEEcc
Confidence 127788888886 688888888888888777655544
No 210
>TIGR01208 rmlA_long glucose-1-phosphate thymidylylransferase, long form. Alternate name: dTDP-D-glucose synthase
Probab=98.44 E-value=9.3e-07 Score=85.90 Aligned_cols=19 Identities=32% Similarity=0.398 Sum_probs=8.8
Q ss_pred EEeeeEeCCCcEECCCeEE
Q 014564 367 KIKECIIDKNARIGKNVII 385 (422)
Q Consensus 367 ~i~~~~i~~~~~i~~~~~i 385 (422)
.+.+++++++|.|++++.+
T Consensus 319 ~~~~~ii~~~~~i~~~~~~ 337 (353)
T TIGR01208 319 RIVDSVIGKKVRIKGNRRR 337 (353)
T ss_pred eeecCEEcCCCEECCCccc
Confidence 3344444444444444444
No 211
>TIGR03535 DapD_actino 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase. Alternate name: tetrahydrodipicolinate N-succinyltransferase.
Probab=98.44 E-value=2.5e-06 Score=77.98 Aligned_cols=28 Identities=7% Similarity=0.235 Sum_probs=15.5
Q ss_pred eEeCCCcEEeeeEeCCCcEECCCeEEccC
Q 014564 360 VGIGENTKIKECIIDKNARIGKNVIIANS 388 (422)
Q Consensus 360 ~~i~~~~~i~~~~i~~~~~i~~~~~i~~~ 388 (422)
|.||.+|.| +..||++|+||+|+++..+
T Consensus 232 ~~IGagA~I-GI~IGd~~VVGAGaVVtkg 259 (319)
T TIGR03535 232 CLLGANSGL-GISLGDDCVVEAGLYVTAG 259 (319)
T ss_pred cEECCCCEE-CeEECCCCEECCCCEEeCC
Confidence 455555555 5555666666666555543
No 212
>PRK00725 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.43 E-value=5.4e-07 Score=89.60 Aligned_cols=54 Identities=9% Similarity=0.276 Sum_probs=48.3
Q ss_pred eeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEcc
Q 014564 314 FIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 314 ~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
.+.+|+||++|+| .+|.|++|++..+ |.|+++|.|.+|+|+++|.||+++.+.+
T Consensus 324 ~~~~s~i~~~~~i-~~~~i~~svi~~~-------------------~~I~~~~~i~~svi~~~~~I~~~~~i~~ 377 (425)
T PRK00725 324 MAINSLVSGGCII-SGAVVRRSVLFSR-------------------VRVNSFSNVEDSVLLPDVNVGRSCRLRR 377 (425)
T ss_pred eEEeCEEcCCcEE-cCccccCCEECCC-------------------CEECCCCEEeeeEEcCCCEECCCCEEee
Confidence 4568999999999 7999998777554 9999999999999999999999999964
No 213
>PRK10191 putative acyl transferase; Provisional
Probab=98.42 E-value=7.5e-07 Score=74.29 Aligned_cols=79 Identities=15% Similarity=0.191 Sum_probs=42.8
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEEC
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIG 380 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~ 380 (422)
+.||+++.|+.. ..++|+++++||++|.|++.+.+|+.... .. ..+.||++|++. ++.+..++.||
T Consensus 48 a~Ig~~~~I~~g--~~i~I~~~~~IGd~~~I~h~v~IG~~~~~--------~~---~~~~IGd~~~Ig~~~~I~~~v~IG 114 (146)
T PRK10191 48 ATIGRRFTIHHG--YAVVINKNVVAGDDFTIRHGVTIGNRGAD--------NM---ACPHIGNGVELGANVIILGDITIG 114 (146)
T ss_pred CEECCCeEECCC--CeEEECCCcEECCCCEECCCCEECCCCcC--------CC---CCCEECCCcEEcCCCEEeCCCEEC
Confidence 344444444421 13455555555555555555555532000 00 015677777776 57777777777
Q ss_pred CCeEEccCCCccc
Q 014564 381 KNVIIANSEGIQE 393 (422)
Q Consensus 381 ~~~~i~~~~~~~~ 393 (422)
++++++.++.+.+
T Consensus 115 ~~~~Igags~V~~ 127 (146)
T PRK10191 115 NNVTVGAGSVVLD 127 (146)
T ss_pred CCCEECCCCEECC
Confidence 7777776554443
No 214
>PRK11132 cysE serine acetyltransferase; Provisional
Probab=98.42 E-value=1.2e-06 Score=80.41 Aligned_cols=28 Identities=29% Similarity=0.482 Sum_probs=20.6
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
|.||.+|+|. ++.||++|.||+|+++..
T Consensus 200 V~IGaga~Ilggv~IG~~a~IGAgSvV~~ 228 (273)
T PRK11132 200 VMIGAGAKILGNIEVGRGAKIGAGSVVLQ 228 (273)
T ss_pred cEEcCCCEEcCCCEECCCCEECCCCEECc
Confidence 7777777776 577777777777776664
No 215
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.41 E-value=1.9e-06 Score=74.31 Aligned_cols=85 Identities=22% Similarity=0.239 Sum_probs=40.5
Q ss_pred ccEEcCCCEEcc-cee---eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCC
Q 014564 301 DSIISHGSFITS-SFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 375 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v---~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~ 375 (422)
++.||+++.|+. +.+ ....||+++.|+++|.|..+.. . ... .+.... ..-..++.||++|+|. +++|.+
T Consensus 62 ~i~IG~~v~I~~~~~i~~~~~i~IG~~v~Ig~~~~I~~~~h---~-~~~-~~~~~~-~~~~~~v~IG~~~~Ig~~a~I~~ 135 (169)
T cd03357 62 NIHIGDNFYANFNCTILDVAPVTIGDNVLIGPNVQIYTAGH---P-LDP-EERNRG-LEYAKPITIGDNVWIGGGVIILP 135 (169)
T ss_pred cCEECCCceEcCCEEEeccCcEEECCCCEECCCCEEEeCCC---C-CCh-hHcccc-ceecCCcEeCCCEEECCCCEEeC
Confidence 345555555553 222 1456777777777777743210 0 000 000000 0000115666666665 566666
Q ss_pred CcEECCCeEEccCCCc
Q 014564 376 NARIGKNVIIANSEGI 391 (422)
Q Consensus 376 ~~~i~~~~~i~~~~~~ 391 (422)
+++||++++++.++.+
T Consensus 136 gv~Ig~~~~VgagavV 151 (169)
T cd03357 136 GVTIGDNSVIGAGSVV 151 (169)
T ss_pred CCEECCCCEECCCCEE
Confidence 6666666666654433
No 216
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.41 E-value=1.9e-06 Score=75.02 Aligned_cols=87 Identities=21% Similarity=0.255 Sum_probs=45.9
Q ss_pred ccEEcCCCEEcc-ceee---eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCC
Q 014564 301 DSIISHGSFITS-SFIE---HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 375 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v~---~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~ 375 (422)
++.||+++.|+. +.+. ...||++|.|+++|.|.....-.+ ... ......-..++.||++|+|. +|+|.+
T Consensus 73 ~i~iG~~~~in~~~~i~d~~~I~IGd~v~I~~~v~i~t~~h~~~----~~~--~~~~~~~~~~v~IGd~v~IG~~a~I~~ 146 (183)
T PRK10092 73 NIFLGNNFYANFDCVMLDVCPIRIGDNCMLAPGVHIYTATHPLD----PVA--RNSGAELGKPVTIGNNVWIGGRAVINP 146 (183)
T ss_pred CcEEcCCcEECCceEEecCceEEECCCCEECCCCEEEcCCCCCC----hHH--ccccceecCCeEECCCcEECCCCEECC
Confidence 455666655553 2221 226777777777776643211000 000 00000001227788888885 688888
Q ss_pred CcEECCCeEEccCCCccc
Q 014564 376 NARIGKNVIIANSEGIQE 393 (422)
Q Consensus 376 ~~~i~~~~~i~~~~~~~~ 393 (422)
+++||++++|+.++.+.+
T Consensus 147 gv~IG~~~vIgagsvV~~ 164 (183)
T PRK10092 147 GVTIGDNVVVASGAVVTK 164 (183)
T ss_pred CCEECCCCEECCCCEEcc
Confidence 888888888877554443
No 217
>PLN02739 serine acetyltransferase
Probab=98.40 E-value=6.2e-07 Score=83.93 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=10.3
Q ss_pred eEEcCCcEECCCCEEcceEEEC
Q 014564 318 SVVGIRSRINANVHLKDTMMLG 339 (422)
Q Consensus 318 s~ig~~~~i~~~~~i~~~~~~~ 339 (422)
++||++|+||++|.|..++.+|
T Consensus 226 VVIG~~avIGdnv~I~~gVTIG 247 (355)
T PLN02739 226 VVIGETAVIGDRVSILHGVTLG 247 (355)
T ss_pred eEECCCCEECCCCEEcCCceeC
Confidence 4444444444444444444443
No 218
>PRK00844 glgC glucose-1-phosphate adenylyltransferase; Provisional
Probab=98.40 E-value=9.9e-07 Score=87.32 Aligned_cols=54 Identities=15% Similarity=0.403 Sum_probs=47.7
Q ss_pred eeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEcc
Q 014564 314 FIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 314 ~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
.+.++.||++|.|+ ++.|+++++ +++ |.|+++|.|.+|+|+++|.|++++.+.+
T Consensus 312 ~~~~~~ig~~~~I~-~~~i~~svI-g~~------------------~~I~~~~~i~~sii~~~~~i~~~~~i~~ 365 (407)
T PRK00844 312 SAQDSLVSAGSIIS-GATVRNSVL-SPN------------------VVVESGAEVEDSVLMDGVRIGRGAVVRR 365 (407)
T ss_pred eEEeCEEcCCCEEC-CeeeEcCEE-CCC------------------CEECCCCEEeeeEECCCCEECCCCEEEe
Confidence 35689999999999 999998665 554 9999999999999999999999999976
No 219
>PRK10502 putative acyl transferase; Provisional
Probab=98.39 E-value=2.5e-06 Score=74.53 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=43.1
Q ss_pred ccEEcCCCEEcc-cee---eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCC
Q 014564 301 DSIISHGSFITS-SFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDK 375 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v---~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~ 375 (422)
+..||++|.|++ +.+ ..+.||++|.|+.++.|...... . ... ...-...++.||++|+|. +|+|.+
T Consensus 71 ~~~IG~~~~Ig~~~~I~~~~~v~IG~~~~I~~~~~I~~~~h~-~--~~~------~~~~~~~~i~Igd~~~Ig~~a~I~~ 141 (182)
T PRK10502 71 KLTIGDYAWIGDDVWLYNLGEITIGAHCVISQKSYLCTGSHD-Y--SDP------HFDLNTAPIVIGEGCWLAADVFVAP 141 (182)
T ss_pred eEEECCCeEECCCceecccCceEECCCcEECCCeEEECCCCC-C--cCC------CcccccCCEEEcCCcEEcCCCEEcC
Confidence 355666666663 222 14567777777766666332110 0 000 000000126777777776 577777
Q ss_pred CcEECCCeEEccCCCc
Q 014564 376 NARIGKNVIIANSEGI 391 (422)
Q Consensus 376 ~~~i~~~~~i~~~~~~ 391 (422)
+++||++++++.++.+
T Consensus 142 Gv~Ig~~~vIga~svV 157 (182)
T PRK10502 142 GVTIGSGAVVGARSSV 157 (182)
T ss_pred CCEECCCCEECCCCEE
Confidence 7777777777755443
No 220
>TIGR01172 cysE serine O-acetyltransferase. Cysteine biosynthesis
Probab=98.39 E-value=1.9e-06 Score=73.75 Aligned_cols=28 Identities=32% Similarity=0.535 Sum_probs=17.4
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
|.|+.++.|. +++||++|.||+++++..
T Consensus 120 v~Ig~~a~I~~~v~IG~~~~Iga~s~V~~ 148 (162)
T TIGR01172 120 VMIGAGAKVLGNIEVGENAKIGANSVVLK 148 (162)
T ss_pred cEEcCCCEEECCcEECCCCEECCCCEECC
Confidence 6666666665 366666666666666653
No 221
>COG0448 GlgC ADP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=98.38 E-value=1.3e-06 Score=82.74 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=51.7
Q ss_pred cCCCEEc-cceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCe
Q 014564 305 SHGSFIT-SSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNV 383 (422)
Q Consensus 305 ~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~ 383 (422)
.+.+.+. .+.+.+|.|+.||.|.- .|++|++.-+ ++|+.+|.|.+|+|.++|.||+||
T Consensus 283 ~pPak~~~~s~v~nSLv~~GciI~G--~V~nSVL~~~-------------------v~I~~gs~i~~svim~~~~IG~~~ 341 (393)
T COG0448 283 LPPAKFVNDSEVSNSLVAGGCIISG--TVENSVLFRG-------------------VRIGKGSVIENSVIMPDVEIGEGA 341 (393)
T ss_pred CCCceEecCceEeeeeeeCCeEEEe--EEEeeEEecC-------------------eEECCCCEEEeeEEeCCcEECCCC
Confidence 3334333 23456899999999995 8999988765 999999999999999999999999
Q ss_pred EEcc
Q 014564 384 IIAN 387 (422)
Q Consensus 384 ~i~~ 387 (422)
.+.+
T Consensus 342 ~l~~ 345 (393)
T COG0448 342 VLRR 345 (393)
T ss_pred EEEE
Confidence 9975
No 222
>PLN02739 serine acetyltransferase
Probab=98.37 E-value=2.3e-06 Score=80.24 Aligned_cols=53 Identities=21% Similarity=0.263 Sum_probs=33.4
Q ss_pred eeEEcCCcEECCCCEEcc--------eEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 317 HSVVGIRSRINANVHLKD--------TMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
+++||++|.|..++.|++ .+.+|++ |.||.+++|. ++.||++|.||+|+++..
T Consensus 231 ~avIGdnv~I~~gVTIGg~g~~~g~r~p~IGd~------------------V~IGagA~IlG~V~IGd~aiIGAGSVV~k 292 (355)
T PLN02739 231 TAVIGDRVSILHGVTLGGTGKETGDRHPKIGDG------------------ALLGACVTILGNISIGAGAMVAAGSLVLK 292 (355)
T ss_pred CCEECCCCEEcCCceeCCcCCcCCCCCcEECCC------------------CEEcCCCEEeCCeEECCCCEECCCCEECC
Confidence 555556666666666643 2455554 6777777775 577777777777776653
No 223
>PLN02357 serine acetyltransferase
Probab=98.35 E-value=2.8e-06 Score=80.29 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=21.7
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
+.||.++.|. ++.||+++.||+++++..
T Consensus 285 V~IGagA~IlggV~IGdga~IGAgSVV~~ 313 (360)
T PLN02357 285 VLIGAGTCILGNITIGEGAKIGAGSVVLK 313 (360)
T ss_pred eEECCceEEECCeEECCCCEECCCCEECc
Confidence 7788887774 688888888888877764
No 224
>PRK09677 putative lipopolysaccharide biosynthesis O-acetyl transferase WbbJ; Provisional
Probab=98.34 E-value=5.4e-06 Score=73.05 Aligned_cols=91 Identities=20% Similarity=0.264 Sum_probs=47.3
Q ss_pred ccEEcCCCEEcc-cee---eeeEEcCCcEECCCCEEcceEEECC-----ccccchhhHHhhhcCCCcceEeCCCcEEe-e
Q 014564 301 DSIISHGSFITS-SFI---EHSVVGIRSRINANVHLKDTMMLGA-----DFYETDAEVASLLAEGRVPVGIGENTKIK-E 370 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v---~~s~ig~~~~i~~~~~i~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~ 370 (422)
...||+++.|++ +.+ ..+.||++|.|++++.|.+... +. .+............. ..++.||++|+|. +
T Consensus 65 ~i~IG~~v~Ig~~v~I~~~~~v~IG~~v~Ig~~v~I~~~~h-g~~~~~~~~~~~~~~~~~~~~~-~~~v~Ig~~~~ig~~ 142 (192)
T PRK09677 65 KLFFGDNVQVNDYVHIACIESITIGRDTLIASKVFITDHNH-GSFKHSDDFSSPNLPPDMRTLE-SSAVVIGQRVWIGEN 142 (192)
T ss_pred eEEECCCCEECCCcEEccCceEEECCCCEECCCeEEECCCC-ccccccccccccccChhhcccc-cCCeEEcCCcEECCC
Confidence 466777777764 222 2567777777777777765321 00 000000000000000 1126777777775 5
Q ss_pred eEeCCCcEECCCeEEccCCCccc
Q 014564 371 CIIDKNARIGKNVIIANSEGIQE 393 (422)
Q Consensus 371 ~~i~~~~~i~~~~~i~~~~~~~~ 393 (422)
+++.++++||++++++.++.+.+
T Consensus 143 ~~i~~g~~Ig~~~~Iga~s~v~~ 165 (192)
T PRK09677 143 VTILPGVSIGNGCIVGANSVVTK 165 (192)
T ss_pred CEEcCCCEECCCCEECCCCEECc
Confidence 77777777777777766554443
No 225
>cd03357 LbH_MAT_GAT Maltose O-acetyltransferase (MAT) and Galactoside O-acetyltransferase (GAT): MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively at the C6 position of the nonreducing end glucosyl moiety. GAT specifically acetylates galactopyranosides. Furthermore, MAT shows higher affinity toward artificial substrates containing an alkyl or hydrophobic chain as well as a glucosyl unit. Active MAT and GAT are homotrimers, with each subunit consisting of an N-terminal alpha-helical region and a C-terminal left-handed parallel alpha-helix (LbH) subdomain with 6 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X).
Probab=98.34 E-value=2.5e-06 Score=73.64 Aligned_cols=24 Identities=17% Similarity=0.207 Sum_probs=11.4
Q ss_pred eEEcCCcEECCCCEEc--ceEEECCc
Q 014564 318 SVVGIRSRINANVHLK--DTMMLGAD 341 (422)
Q Consensus 318 s~ig~~~~i~~~~~i~--~~~~~~~~ 341 (422)
..||+++.|++++.|. ..+.+|++
T Consensus 63 i~IG~~v~I~~~~~i~~~~~i~IG~~ 88 (169)
T cd03357 63 IHIGDNFYANFNCTILDVAPVTIGDN 88 (169)
T ss_pred CEECCCceEcCCEEEeccCcEEECCC
Confidence 3455555555555443 23444444
No 226
>PLN02694 serine O-acetyltransferase
Probab=98.34 E-value=2.4e-06 Score=78.49 Aligned_cols=28 Identities=29% Similarity=0.406 Sum_probs=20.0
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
|.||.++.|. ++.||++|.||+|+++..
T Consensus 219 V~IGagA~Ilggi~IGd~a~IGAgSVV~k 247 (294)
T PLN02694 219 VLIGAGATILGNVKIGEGAKIGAGSVVLI 247 (294)
T ss_pred eEECCeeEECCCCEECCCCEECCCCEECC
Confidence 7777777773 677777777777777764
No 227
>PLN02241 glucose-1-phosphate adenylyltransferase
Probab=98.29 E-value=2.4e-06 Score=85.35 Aligned_cols=93 Identities=19% Similarity=0.212 Sum_probs=65.8
Q ss_pred CCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCC----------
Q 014564 306 HGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDK---------- 375 (422)
Q Consensus 306 ~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~---------- 375 (422)
+++.+.++.+..|+|+++|+|+ +|.|+++++. ++ |.|+++|.|.+|++..
T Consensus 304 ~~~~~~~~~i~~s~I~~~~~I~-~~~I~~svI~-~~------------------~~Ig~~~~I~~sii~g~~~~~~~~~~ 363 (436)
T PLN02241 304 PPSKIEDCRITDSIISHGCFLR-ECKIEHSVVG-LR------------------SRIGEGVEIEDTVMMGADYYETEEEI 363 (436)
T ss_pred CCcEecCCeEEEeEEcCCcEEc-CeEEEeeEEc-CC------------------CEECCCCEEEEeEEECCCcccccccc
Confidence 4455555666679999999999 9999988655 44 9999999999988744
Q ss_pred ------C---cEECCCeEEccCCCcccccccCCCeEEcCCeE-----EEcCCceecCC
Q 014564 376 ------N---ARIGKNVIIANSEGIQEADRSAEGFYIRSGVT-----VILKNSVITDG 419 (422)
Q Consensus 376 ------~---~~i~~~~~i~~~~~~~~~~~~~~~~~i~~~~~-----~ig~~~~i~~g 419 (422)
+ +.||+++.+.+ ..+...+.|++++.|..... ++|+++.|++|
T Consensus 364 ~~~~~~~~~~~~Ig~~~~i~~-~vI~~~v~Ig~~~~i~~~~~~~~~~~~~~~~~~~~~ 420 (436)
T PLN02241 364 ASLLAEGKVPIGIGENTKIRN-AIIDKNARIGKNVVIINKDGVQEADREEEGYYIRSG 420 (436)
T ss_pred ccccccCCcceEECCCCEEcc-eEecCCCEECCCcEEecccccCCccccccccEEeCC
Confidence 2 38999988875 44555666666666653221 24556666665
No 228
>COG1208 GCD1 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) [Cell envelope biogenesis, outer membrane / Translation, ribosomal structure and biogenesis]
Probab=98.29 E-value=3e-06 Score=82.06 Aligned_cols=52 Identities=29% Similarity=0.447 Sum_probs=26.7
Q ss_pred eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEeeeEeCCCcEECCCeEEc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKECIIDKNARIGKNVIIA 386 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i~~~~~i~~~~~i~ 386 (422)
..++|.+|.|++++.|++.+++|++ |.|++++.|.+|++.++|+|++++.+.
T Consensus 261 p~~ig~~~~i~~~~~i~~~~~ig~~------------------~~I~~~~~i~~Sii~~~~~i~~~~~i~ 312 (358)
T COG1208 261 PVVIGPGAKIGPGALIGPYTVIGEG------------------VTIGNGVEIKNSIIMDNVVIGHGSYIG 312 (358)
T ss_pred CEEECCCCEECCCCEECCCcEECCC------------------CEECCCcEEEeeEEEcCCEECCCCEEe
Confidence 3444455555555555554444444 555555555555555555555555444
No 229
>PRK10092 maltose O-acetyltransferase; Provisional
Probab=98.24 E-value=6.2e-06 Score=71.83 Aligned_cols=14 Identities=14% Similarity=0.219 Sum_probs=6.4
Q ss_pred cccCCCeEEcCCeE
Q 014564 395 DRSAEGFYIRSGVT 408 (422)
Q Consensus 395 ~~~~~~~~i~~~~~ 408 (422)
+.||++++|+.+++
T Consensus 148 v~IG~~~vIgagsv 161 (183)
T PRK10092 148 VTIGDNVVVASGAV 161 (183)
T ss_pred CEECCCCEECCCCE
Confidence 34444455544443
No 230
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.23 E-value=5.8e-06 Score=65.64 Aligned_cols=32 Identities=25% Similarity=0.325 Sum_probs=20.3
Q ss_pred cEEcCCCEEccceeeeeEEcCCcEECCCCEEcce
Q 014564 302 SIISHGSFITSSFIEHSVVGIRSRINANVHLKDT 335 (422)
Q Consensus 302 ~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~ 335 (422)
+.|++++.|.+. ..+.||++|.|+++|.|.++
T Consensus 8 ~~I~~~~~i~~~--~~v~IG~~~~Ig~~~~i~~~ 39 (109)
T cd04647 8 VYIGPGCVISAG--GGITIGDNVLIGPNVTIYDH 39 (109)
T ss_pred cEECCCCEEecC--CceEECCCCEECCCCEEECC
Confidence 444444444321 25788888888888888765
No 231
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.21 E-value=1.3e-05 Score=63.43 Aligned_cols=33 Identities=15% Similarity=0.388 Sum_probs=21.2
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 392 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 392 (422)
+.||++|+|. ++.+.++++||++++++.++.+.
T Consensus 57 v~Ig~~~~ig~~~~i~~g~~Ig~~~~i~~gs~v~ 90 (107)
T cd05825 57 IVIGDGAWVAAEAFVGPGVTIGEGAVVGARSVVV 90 (107)
T ss_pred EEECCCCEECCCCEECCCCEECCCCEECCCCEEe
Confidence 6677777776 46666666666666666654443
No 232
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=98.21 E-value=3.6e-06 Score=72.78 Aligned_cols=26 Identities=35% Similarity=0.533 Sum_probs=11.8
Q ss_pred ccCCCeEEcCCeEE-----EcCCceecCCcc
Q 014564 396 RSAEGFYIRSGVTV-----ILKNSVITDGFV 421 (422)
Q Consensus 396 ~~~~~~~i~~~~~~-----ig~~~~i~~g~~ 421 (422)
.|+||++||.|+++ ||+|++|++|++
T Consensus 202 ~Igd~vliGaGvtILgnV~IGegavIaAGsv 232 (269)
T KOG4750|consen 202 KIGDNVLIGAGVTILGNVTIGEGAVIAAGSV 232 (269)
T ss_pred cccCCeEEccccEEeCCeeECCCcEEeccce
Confidence 44444444444443 344444444443
No 233
>cd05825 LbH_wcaF_like wcaF-like: This group is composed of the protein product of the E. coli wcaF gene and similar proteins. WcaF is part of the gene cluster responsible for the biosynthesis of the extracellular polysaccharide colanic acid. The wcaF protein is predicted to contain a left-handed parallel beta-helix (LbH) domain encoded by imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). Proteins containing hexapeptide repeats are often enzymes showing acyltransferase activity. Many are trimeric in their active forms.
Probab=98.20 E-value=9e-06 Score=64.44 Aligned_cols=17 Identities=18% Similarity=0.171 Sum_probs=10.2
Q ss_pred eeEEcCCcEECCCCEEc
Q 014564 317 HSVVGIRSRINANVHLK 333 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~ 333 (422)
...||++|.|++++.|.
T Consensus 23 ~i~IG~~~~I~~~~~I~ 39 (107)
T cd05825 23 PVTIGSDACISQGAYLC 39 (107)
T ss_pred ceEECCCCEECCCeEee
Confidence 35666666666666554
No 234
>COG1045 CysE Serine acetyltransferase [Amino acid transport and metabolism]
Probab=98.19 E-value=4.5e-06 Score=71.32 Aligned_cols=67 Identities=27% Similarity=0.383 Sum_probs=39.2
Q ss_pred eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEcc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~ 387 (422)
..+||+-+.||++|.|..++.+|.+.-+.. +-+-.-+++ +.||.+++|- +..||+|+.||+|+++..
T Consensus 87 GvVIgeta~IGddv~I~~gVTLGgtg~~~g-~RhPtIg~~---V~IGagAkILG~I~IGd~akIGA~sVVlk 154 (194)
T COG1045 87 GVVIGETAVIGDDVTIYHGVTLGGTGKESG-KRHPTIGNG---VYIGAGAKILGNIEIGDNAKIGAGSVVLK 154 (194)
T ss_pred eEEEcceeEECCCeEEEcceEecCCCCcCC-CCCCccCCC---eEECCCCEEEcceEECCCCEECCCceEcc
Confidence 456666666666666666666665311110 000000111 7777777775 688888888888877764
No 235
>PF02348 CTP_transf_3: Cytidylyltransferase; InterPro: IPR003329 Synonym(s): CMP-N-acetylneuraminic acid synthetase Acylneuraminate cytidylyltransferase (2.7.7.43 from EC) (CMP-NeuAc synthetase) catalyzes the reaction of CTP and NeuAc to form CMP-NeuAc, which is the nucleotide sugar donor used by sialyltransferases []. The outer membrane lipooligosaccharides of some microorganisms contain terminal sialic acid attached to N-acetyllactosamine and so this modification may be important in pathogenesis.; GO: 0009103 lipopolysaccharide biosynthetic process; PDB: 3K8D_C 1VH1_B 3K8E_C 1QWJ_A 3EWI_A 1VIC_B 3DUV_A 1VH3_C 3TQD_A 2Y6P_C ....
Probab=98.19 E-value=1.9e-05 Score=71.09 Aligned_cols=116 Identities=22% Similarity=0.357 Sum_probs=77.3
Q ss_pred EEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCe
Q 014564 11 AVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGC 89 (422)
Q Consensus 11 aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~ 89 (422)
|||+|-+.++|+ --|.|.+++|+ |||+|+++.+.++ .+++|+|.| ..+++.+.+.+ ++.+
T Consensus 2 aiIpAR~gS~rl------p~Knl~~l~gk-pLi~~~i~~a~~s~~~d~IvVaT--d~~~i~~~~~~---~g~~------- 62 (217)
T PF02348_consen 2 AIIPARGGSKRL------PGKNLKPLGGK-PLIEYVIERAKQSKLIDEIVVAT--DDEEIDDIAEE---YGAK------- 62 (217)
T ss_dssp EEEEE-SSSSSS------TTGGGSEETTE-EHHHHHHHHHHHTTTTSEEEEEE--SSHHHHHHHHH---TTSE-------
T ss_pred EEEecCCCCCCC------CcchhhHhCCc-cHHHHHHHHHHhCCCCCeEEEeC--CCHHHHHHHHH---cCCe-------
Confidence 799999999998 66999999999 9999999999998 579988888 45566666654 2211
Q ss_pred EEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHcCCc
Q 014564 90 VEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQSGAD 158 (422)
Q Consensus 90 v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~~~~ 158 (422)
+........ .++......+..+..+ . .+.++.+.||. +.+.. +..+++.+.+..++
T Consensus 63 v~~~~~~~~---------~~~~r~~~~~~~~~~~-~---~~~vv~~~~d~Pll~~~~i~~~i~~~~~~~~~ 120 (217)
T PF02348_consen 63 VIFRRGSLA---------DDTDRFIEAIKHFLAD-D---EDIVVRLQGDSPLLDPTSIDRAIEDIREANED 120 (217)
T ss_dssp EEE--TTSS---------SHHHHHHHHHHHHTCS-T---TSEEEEESTTETT--HHHHHHHHHHHHHSTTS
T ss_pred eEEcChhhc---------CCcccHHHHHHHhhhh-H---HhhccccCCeeeECCHHHHHHHHHHHhcCchh
Confidence 322222211 2444444444444332 1 24789999999 55554 68888888887765
No 236
>COG1861 SpsF Spore coat polysaccharide biosynthesis protein F, CMP-KDO synthetase homolog [Cell envelope biogenesis, outer membrane]
Probab=98.19 E-value=9.1e-05 Score=64.47 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=77.8
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh--HHHHHHHHhhccCCCCc
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS--ASLNRHLARAYNYGSGV 83 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~--~~i~~~l~~~~~~~~~~ 83 (422)
+++-+||-|--.+||| --|.|+|+++. |||+++|+++.++ -+++++|.++-.. +.+..++.+. |
T Consensus 2 ~~I~~IiQARmgStRL------pgKvLlpL~~~-pmI~~~lervrks~~~d~ivvATS~~~~d~~l~~~~~~~-----G- 68 (241)
T COG1861 2 SMILVIIQARMGSTRL------PGKVLLPLGGE-PMIEYQLERVRKSKDLDKIVVATSDKEEDDALEEVCRSH-----G- 68 (241)
T ss_pred CcEEEEeeecccCccC------CcchhhhcCCC-chHHHHHHHHhccccccceEEEecCCcchhHHHHHHHHc-----C-
Confidence 3444555554456776 56999999999 9999999999998 4789999987443 4566665431 1
Q ss_pred ccCCCeEEEeccCCCCCcCCcccccCcH-HHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecCh-HHHHHHHHHcCCcE
Q 014564 84 TFGDGCVEVLAATQTPGEAGKRWFQGTA-DAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMDY-MDFVQNHRQSGADI 159 (422)
Q Consensus 84 ~~~~~~v~i~~~~~~~~~~~~~~~~g~~-~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~l-~~ll~~~~~~~~~~ 159 (422)
+.+. .|+. +.|......++.. ..+.++=+.||. +.++.+ ..++..|.+++++.
T Consensus 69 ------~~vf--------------rGs~~dVL~Rf~~a~~a~---~~~~VVRvTGD~P~~dp~l~d~~v~~~l~~gaDY 124 (241)
T COG1861 69 ------FYVF--------------RGSEEDVLQRFIIAIKAY---SADVVVRVTGDNPFLDPELVDAAVDRHLEKGADY 124 (241)
T ss_pred ------eeEe--------------cCCHHHHHHHHHHHHHhc---CCCeEEEeeCCCCCCCHHHHHHHHHHHHhcCCcc
Confidence 2222 1333 3333333333322 146888899999 777774 77888898888774
No 237
>cd04647 LbH_MAT_like Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.
Probab=98.16 E-value=1.4e-05 Score=63.39 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=10.6
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIA 386 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~ 386 (422)
+.||++|.|. ++.+.+++.|++++.++
T Consensus 59 ~~Ig~~~~ig~~~~i~~~~~ig~~~~i~ 86 (109)
T cd04647 59 IVIGDDVWIGANVVILPGVTIGDGAVVG 86 (109)
T ss_pred eEECCCCEECCCCEEcCCCEECCCCEEC
Confidence 3344444442 33333444444443333
No 238
>PRK00576 molybdopterin-guanine dinucleotide biosynthesis protein A; Provisional
Probab=98.13 E-value=5.6e-05 Score=65.82 Aligned_cols=97 Identities=14% Similarity=0.151 Sum_probs=59.8
Q ss_pred CcCcceeeCC--cceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCccc
Q 014564 29 RAKPAVPIGG--AYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (422)
Q Consensus 29 ~pK~Llpv~g--k~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (422)
.+|+|+++.| + |||+|+++.+.. .+++++|+++... .+ .. . + +.++.....
T Consensus 3 ~dK~ll~~~g~~~-~ll~~~~~~l~~-~~~~iivv~~~~~-~~----~~---~--~-------~~~i~d~~~-------- 55 (178)
T PRK00576 3 RDKATLPLPGGTT-TLVEHVVGIVGQ-RCAPVFVMAAPGQ-PL----PE---L--P-------APVLRDELR-------- 55 (178)
T ss_pred CCCEeeEeCCCCc-CHHHHHHHHHhh-cCCEEEEECCCCc-cc----cc---C--C-------CCEeccCCC--------
Confidence 5899999999 9 999999998764 6899999987532 11 00 0 1 123322111
Q ss_pred ccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-eeecC-hHHHHHHHHHc
Q 014564 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-LYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 107 ~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i~~~~-l~~ll~~~~~~ 155 (422)
..|...++..+...+.. ...+.+++++||+ +...+ +..+++.+...
T Consensus 56 g~gpl~~~~~gl~~~~~---~~~~~~lv~~~DmP~i~~~~i~~L~~~~~~~ 103 (178)
T PRK00576 56 GLGPLPATGRGLRAAAE---AGARLAFVCAVDMPYLTVELIDDLARPAAQT 103 (178)
T ss_pred CCCcHHHHHHHHHHHHh---cCCCEEEEEeCCCCCCCHHHHHHHHHHhhcC
Confidence 12555555544433211 0148999999999 66655 56666655433
No 239
>cd03354 LbH_SAT Serine acetyltransferase (SAT): SAT catalyzes the CoA-dependent acetylation of the side chain hydroxyl group of L-serine to form O-acetylserine, as the first step of a two-step biosynthetic pathway in bacteria and plants leading to the formation of L-cysteine. This reaction represents a key metabolic point of regulation for the cysteine biosynthetic pathway due to its feedback inhibition by cysteine. The enzyme is a 175 kDa homohexamer, composed of a dimer of homotrimers. Each subunit contains an N-terminal alpha helical region and a C-terminal left-handed beta-helix (LbH) subdomain with 5 turns, each containing a hexapeptide repeat motif characteristic of the acyltransferase superfamily of enzymes. The trimer interface mainly involves the C-terminal LbH subdomain while the dimer (of trimers) interface is mediated by the N-terminal alpha helical subdomain.
Probab=98.07 E-value=2.1e-05 Score=61.59 Aligned_cols=27 Identities=37% Similarity=0.574 Sum_probs=14.2
Q ss_pred eEeCCCcEEee-eEeCCCcEECCCeEEc
Q 014564 360 VGIGENTKIKE-CIIDKNARIGKNVIIA 386 (422)
Q Consensus 360 ~~i~~~~~i~~-~~i~~~~~i~~~~~i~ 386 (422)
+.|+.++.+.. +.|+++|.|++++.+.
T Consensus 61 ~~Ig~~~~i~~~~~Ig~~~~i~~~~~i~ 88 (101)
T cd03354 61 VVIGAGAKILGNITIGDNVKIGANAVVT 88 (101)
T ss_pred cEEcCCCEEECcCEECCCCEECCCCEEC
Confidence 44555555543 5555555555555554
No 240
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.83 E-value=0.00013 Score=61.08 Aligned_cols=33 Identities=27% Similarity=0.323 Sum_probs=20.3
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcc
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQ 392 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~ 392 (422)
+.||++|+|. +|++.++++||++++++.++.+.
T Consensus 74 ~~Ig~~~~Ig~~~~i~~gv~Ig~~~vIgags~V~ 107 (145)
T cd03349 74 VIIGNDVWIGHGATILPGVTIGDGAVIAAGAVVT 107 (145)
T ss_pred cEECCCCEECCCCEEeCCCEECCCCEECCCCEEc
Confidence 6667777665 46666666666666666544333
No 241
>cd00897 UGPase_euk Eukaryotic UGPase catalyses the synthesis of UDP-Glucose. UGPase (UDP-Glucose Pyrophosphorylase) catalyzes the reversible production of UDP-Glucose and pyrophosphate (PPi) from Glucose-1-phosphate and UTP. UDP-glucose plays pivotal roles in galactose utilization, in glycogen synthesis, and in the synthesis of the carbohydrate moieties of glycolipids, glycoproteins, and proteoglycans. UGPase is found in both prokaryotes and eukaryotes. Interestingly, while the prokaryotic and eukaryotic forms of UGPase catalyze the same reaction, they share low sequence similarity. This family consists of mainly eukaryotic UTP-glucose-1-phosphate uridylyltransferases.
Probab=97.80 E-value=0.0011 Score=62.03 Aligned_cols=204 Identities=12% Similarity=0.151 Sum_probs=114.2
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC-Ccceeehhhhhhhhhc----CC-cEEEEEeecCh-HHHHHHHHhhccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYNS-ASLNRHLARAYNY 79 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~-gk~pli~~~l~~l~~~----gi-~~i~Iv~~~~~-~~i~~~l~~~~~~ 79 (422)
.++-+|+||||.||||+ ...||.|+||. |+ ++++..++++... |. =..+|.++... ++..++++++. +
T Consensus 2 ~kvavl~LaGG~GTRLG---~~~pKg~~~v~~~~-s~l~l~~~~i~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~~~~-~ 76 (300)
T cd00897 2 NKLVVLKLNGGLGTSMG---CTGPKSLIEVRDGK-TFLDLTVQQIEHLNKTYGVDVPLVLMNSFNTDEDTKKILKKYA-G 76 (300)
T ss_pred CcEEEEEecCCcccccC---CCCCceeeecCCCC-cHHHHHHHHHHHHHHHcCCCceEEEECCCcchHHHHHHHHHcC-C
Confidence 35678999999999996 67999999995 56 9999999998652 22 34566666554 67888887642 2
Q ss_pred CCC-c-ccCCCeEE--------EeccCCCCCcCCcccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcCCeeeecChHH
Q 014564 80 GSG-V-TFGDGCVE--------VLAATQTPGEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (422)
Q Consensus 80 ~~~-~-~~~~~~v~--------i~~~~~~~~~~~~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (422)
.+. + .|.+..+. .+...... +.-.-.+.|.++....... .++++.....+.+.+.+.|.+...-=..
T Consensus 77 ~~~~v~~F~Q~~~P~~~~~~~~~l~~~~~~-~~~~~~P~GhG~i~~aL~~sG~L~~l~~~G~~yi~v~nvDNL~a~~Dp~ 155 (300)
T cd00897 77 VNVDIHTFNQSRYPRISKETLLPVPSWADS-PDEEWYPPGHGDIFESLYNSGLLDTLLAQGKEYLFVSNIDNLGATVDLR 155 (300)
T ss_pred CccCeEEEecCCcccCccccCccccccCCC-cceeeccCCCchHHHHHHHCCcHHHHHhcCCEEEEEEecccccccCCHH
Confidence 111 0 01110000 01000000 0001123355544333221 1111111336899999999964322134
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCcccCCceeeeccce--eeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHH
Q 014564 148 FVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT--VLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLL 217 (422)
Q Consensus 148 ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~--v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll 217 (422)
++-.+..+++++++=+.+... |...+-.....+++ +.++.+=|.+ ....+.+++.+.|+-+++++++
T Consensus 156 ~lg~~~~~~~~~~~evv~Kt~---~dek~G~l~~~~g~~~vvEyse~p~e~~~~~~~~~~~~~~nt~n~~~~l~~L~~~~ 232 (300)
T cd00897 156 ILNHMVDNKAEYIMEVTDKTR---ADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWVNLKAVKRVV 232 (300)
T ss_pred HHHHHHhcCCceEEEEeecCC---CCCcccEEEEECCEEEEEEeccCCHHHHHhhcCcccceEEEEeEEEEEHHHHHHHH
Confidence 778888888888775554433 21111112233554 6666543321 1234678899999998888765
Q ss_pred hh
Q 014564 218 RW 219 (422)
Q Consensus 218 ~~ 219 (422)
+.
T Consensus 233 ~~ 234 (300)
T cd00897 233 EE 234 (300)
T ss_pred Hh
Confidence 43
No 242
>KOG1322 consensus GDP-mannose pyrophosphorylase/mannose-1-phosphate guanylyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=97.77 E-value=2.4e-05 Score=71.97 Aligned_cols=34 Identities=9% Similarity=0.061 Sum_probs=13.7
Q ss_pred cEEcCCCEEc-cceeeeeEEcCCcEECCCCEEcce
Q 014564 302 SIISHGSFIT-SSFIEHSVVGIRSRINANVHLKDT 335 (422)
Q Consensus 302 ~~i~~~~~i~-~~~v~~s~ig~~~~i~~~~~i~~~ 335 (422)
+.||++|+|+ +.++.+|.+=.+..+..++.|..+
T Consensus 283 vvIG~r~~i~~gV~l~~s~il~~~~~~~~s~i~s~ 317 (371)
T KOG1322|consen 283 VVIGPRVRIEDGVRLQDSTILGADYYETHSEISSS 317 (371)
T ss_pred ceECCCcEecCceEEEeeEEEccceechhHHHHhh
Confidence 4444444444 223334444334444444433333
No 243
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.77 E-value=0.00016 Score=63.54 Aligned_cols=87 Identities=24% Similarity=0.290 Sum_probs=50.7
Q ss_pred ccEEcCCCEEcc-cee---eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhh-cCCCcceEeCCCcEEe-eeEeC
Q 014564 301 DSIISHGSFITS-SFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL-AEGRVPVGIGENTKIK-ECIID 374 (422)
Q Consensus 301 ~~~i~~~~~i~~-~~v---~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~i~-~~~i~ 374 (422)
+..+|..|.++. +.+ ....||.++.+++++.|........ ....... .....+++||++|+|. +++|.
T Consensus 67 ~~~iG~~~~i~~~~~~~~~~~i~ig~~~~i~~~v~i~~~~h~~~------~~~~~~~~~~~~~~v~IG~~vwIG~~a~Il 140 (190)
T COG0110 67 NLTIGDLCFIGVNVVILVGEGITIGDNVVVGPNVTIYTNSHPGD------FVTANIGALVGAGPVTIGEDVWIGAGAVIL 140 (190)
T ss_pred ceEECCeeEEcCCcEEEecCCeEECCCceECCCcEEecCCCCCC------hhhcccCCceecCCeEECCCeEEcCccEEC
Confidence 456677776663 221 2344566666666655544322111 0111111 1112348899999998 69999
Q ss_pred CCcEECCCeEEccCCCccc
Q 014564 375 KNARIGKNVIIANSEGIQE 393 (422)
Q Consensus 375 ~~~~i~~~~~i~~~~~~~~ 393 (422)
++++||+|++++.++.+.+
T Consensus 141 pGV~IG~gavigagsVVtk 159 (190)
T COG0110 141 PGVTIGEGAVIGAGSVVTK 159 (190)
T ss_pred CCEEECCCcEEeeCCEEeC
Confidence 9999999999988766655
No 244
>cd03349 LbH_XAT Xenobiotic acyltransferase (XAT): The XAT class of hexapeptide acyltransferases is composed of a large number of microbial enzymes that catalyze the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. Members of this class of enzymes include Enterococcus faecium streptogramin A acetyltransferase and Pseudomonas aeruginosa chloramphenicol acetyltransferase. They contain repeated copies of a six-residue hexapeptide repeat sequence motif (X-[STAV]-X-[LIV]-[GAED]-X) and adopt a left-handed parallel beta helix (LbH) structure. The active enzyme is a trimer with CoA and substrate binding sites at the interface of two separate LbH subunits. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients.
Probab=97.69 E-value=0.00014 Score=60.81 Aligned_cols=23 Identities=17% Similarity=0.148 Sum_probs=12.2
Q ss_pred EEcCCcEECC-CCEEcc-eEEECCc
Q 014564 319 VVGIRSRINA-NVHLKD-TMMLGAD 341 (422)
Q Consensus 319 ~ig~~~~i~~-~~~i~~-~~~~~~~ 341 (422)
.||+++.|+. .+.+.. .+.+|++
T Consensus 3 ~iG~~s~i~~~~~~~~~~~i~IG~~ 27 (145)
T cd03349 3 SVGDYSYGSGPDCDVGGDKLSIGKF 27 (145)
T ss_pred EEeCceeeCCCCceEeCCCeEECCC
Confidence 5667777776 344432 3444443
No 245
>KOG3121 consensus Dynactin, subunit p25 [Cytoskeleton]
Probab=97.62 E-value=8.5e-05 Score=59.57 Aligned_cols=12 Identities=17% Similarity=0.144 Sum_probs=8.9
Q ss_pred ccEEcCCCEEcc
Q 014564 301 DSIISHGSFITS 312 (422)
Q Consensus 301 ~~~i~~~~~i~~ 312 (422)
++.+|..|++..
T Consensus 54 nVr~GryCV~ks 65 (184)
T KOG3121|consen 54 NVRIGRYCVLKS 65 (184)
T ss_pred cceEcceEEecc
Confidence 677788777774
No 246
>COG0110 WbbJ Acetyltransferase (isoleucine patch superfamily) [General function prediction only]
Probab=97.59 E-value=0.00018 Score=63.29 Aligned_cols=12 Identities=42% Similarity=0.432 Sum_probs=6.9
Q ss_pred EcCCceecCCcc
Q 014564 410 ILKNSVITDGFV 421 (422)
Q Consensus 410 ig~~~~i~~g~~ 421 (422)
||++++||+|++
T Consensus 145 IG~gavigagsV 156 (190)
T COG0110 145 IGEGAVIGAGSV 156 (190)
T ss_pred ECCCcEEeeCCE
Confidence 555555555554
No 247
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.58 E-value=0.00032 Score=73.85 Aligned_cols=87 Identities=20% Similarity=0.252 Sum_probs=50.6
Q ss_pred ccEEcCCCEEcccee---eeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCC
Q 014564 301 DSIISHGSFITSSFI---EHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 376 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v---~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~ 376 (422)
.+.||+++.|++..+ ....||+||.|+++|.+.+..+-++. .- ..++.||++|.|. +|+|.++
T Consensus 112 Ga~IG~~v~I~~~~~~~~~li~IG~~~~I~~~v~l~~~~~~~~~----------l~---~g~i~IG~~~~IG~~s~I~~g 178 (695)
T TIGR02353 112 GAKIGKGVDIGSLPPVCTDLLTIGAGTIVRKEVMLLGYRAERGR----------LH---TGPVTLGRDAFIGTRSTLDID 178 (695)
T ss_pred CCEECCCCEEEeeecccCCceEECCCCEECCCCEEEcccCCCCc----------ee---ecCcEECCCcEECCCCEEcCC
Confidence 466777777765222 23456677777766666443221110 00 0116788888886 6888888
Q ss_pred cEECCCeEEccCCCcccccccCCC
Q 014564 377 ARIGKNVIIANSEGIQEADRSAEG 400 (422)
Q Consensus 377 ~~i~~~~~i~~~~~~~~~~~~~~~ 400 (422)
++||++++++.++.+.+.+.+.++
T Consensus 179 ~~Igd~a~vgagS~V~~g~~v~~~ 202 (695)
T TIGR02353 179 TSIGDGAQLGHGSALQGGQSIPDG 202 (695)
T ss_pred CEECCCCEECCCCEecCCcccCCC
Confidence 888888888776655554334433
No 248
>PF01704 UDPGP: UTP--glucose-1-phosphate uridylyltransferase; InterPro: IPR002618 This family consists of UTP--glucose-1-phosphate uridylyltransferases (2.7.7.9 from EC). Also known as UDP-glucose pyrophosphorylase (UDPGP) and Glucose-1-phosphate uridylyltransferase. UTP--glucose-1-phosphate uridylyltransferase catalyses the interconversion of MgUTP + glucose-1-phosphate and UDP-glucose + MgPPi []. UDP-glucose is an important intermediate in mammalian carbohydrate interconversion involved in various metabolic roles depending on tissue type []. In Dictyostelium discoideum (Slime mold), mutants in this enzyme abort the development cycle []. Also within this family is UDP-N-acetylglucosamine pyrophosphorylase (Q16222 from SWISSPROT) [] and two hypothetical proteins from Borrelia burgdorferi, the Lyme disease spirochaete (O51893 from SWISSPROT and O51036 from SWISSPROT).; GO: 0016779 nucleotidyltransferase activity, 0008152 metabolic process; PDB: 2OEG_A 2OEF_A 2YQS_A 2YQJ_A 2YQH_B 2YQC_A 3OH4_A 3OGZ_A 3OH3_A 3OH1_A ....
Probab=97.56 E-value=0.0046 Score=60.87 Aligned_cols=257 Identities=20% Similarity=0.212 Sum_probs=131.6
Q ss_pred ccceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhh----cC-CcEEEEEeecCh-HHHHHHHHhhccC
Q 014564 6 ARTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCIN----SG-INKVYILTQYNS-ASLNRHLARAYNY 79 (422)
Q Consensus 6 ~~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~----~g-i~~i~Iv~~~~~-~~i~~~l~~~~~~ 79 (422)
..++-+|+||||.||||+ ...||.++||....++++..++++.. .| .-..+|.++... ++.++++++.+.+
T Consensus 54 ~~kvavl~LaGGlGTrlG---~~~pK~~~~v~~~~t~ldl~~~qi~~l~~~~~~~iPl~iMtS~~T~~~T~~~l~kyfg~ 130 (420)
T PF01704_consen 54 LGKVAVLKLAGGLGTRLG---CSGPKGLIPVREGKTFLDLIVEQIEALNKKYGVDIPLYIMTSFNTHEDTRKFLEKYFGL 130 (420)
T ss_dssp TTCEEEEEEEESBSGCCT---ESSBGGGSEEETTEEHHHHHHHHHHHHHHHHTTT-EEEEEEETTTHHHHHHHHHHGCGS
T ss_pred hCCEEEEEEcCcccCccC---CCCCCcceecCCcccHHHHHHHHHHHHhccccccceEEEecCcccHHHHHHHHHHhcCC
Confidence 356788999999999997 67899999996443889988888765 23 345666777554 7789999884322
Q ss_pred CCCcc-cCCCeEEEeccCCCC-CcC-C--c--c--c-ccCcHHHHHHHH--HHhcCCCCCccCeEEEEcCCeeeecChHH
Q 014564 80 GSGVT-FGDGCVEVLAATQTP-GEA-G--K--R--W-FQGTADAVRQFH--WLFEDPRNKVIEDVLILSGDHLYRMDYMD 147 (422)
Q Consensus 80 ~~~~~-~~~~~v~i~~~~~~~-~~~-~--~--~--~-~~g~~~al~~~~--~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ 147 (422)
...+. |.+..+..+..+... -+. . . . | +.|.++...... ..++++.....+.+.+.+.|.+...-=..
T Consensus 131 ~~~v~~F~Q~~~P~i~~d~~~~l~~~~~~~~~~~~w~P~GhGdi~~aL~~sG~Ld~l~~~G~eyifv~nvDNL~a~~Dp~ 210 (420)
T PF01704_consen 131 DVDVFFFKQSKLPAIDADGKLPLESKPKDSIAEDEWYPPGHGDIYRALYNSGLLDKLLARGIEYIFVSNVDNLGAVVDPV 210 (420)
T ss_dssp SCCEEEEEE-EEEEEETTTTCBEEETTEESEEEGGEEE-TGGGHHHHHHHTTHHHHHHHTT--EEEEEETTBTT-TT-HH
T ss_pred CcceEEEeecCcceEeCCCccccccccccccchhhccCCCCcceehhhhccChHHHHHHcCCeEEEEEecCCcccccCHH
Confidence 22211 111112111111100 000 0 0 0 0 235554333322 11221111235899999999955433245
Q ss_pred HHHHHHHcCCcEEEEEeecCCCCCcccCCceeeeccce--eeeeeecCCC--------CCCceeeeeEEEEeHHHHHHHH
Q 014564 148 FVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT--VLGLSKQEAE--------EKPYIASMGVYLFKKEILLNLL 217 (422)
Q Consensus 148 ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~--v~~~~~k~~~--------~~~~~~~~Giy~~~~~~l~~ll 217 (422)
++..+.+.++++.+-+.+... |...+-.....+++ +.++.+-+.. ....+.++|--.|+...+++++
T Consensus 211 ~lG~~~~~~~~~~~evv~Kt~---~dek~Gvl~~~~G~~~vvEysqip~~~~~~~~~~~~~~~FntnNi~~~l~~l~~~~ 287 (420)
T PF01704_consen 211 FLGYMIEKNADFGMEVVPKTS---PDEKGGVLCRYDGKLQVVEYSQIPKEHMAEFKDIKGFLLFNTNNIWFSLDFLKRLL 287 (420)
T ss_dssp HHHHHHHTT-SEEEEEEE-CS---TTTSSEEEEEETTEEEEEEGGGS-HHGHHHHTSTTTSBEEEEEEEEEEHHHHHHHH
T ss_pred HHHHHHhccchhheeeeecCC---CCCceeEEEEeCCccEEEEeccCCHHHHHhhhccccceEEEeceeeEEHHHHHHHH
Confidence 778888888888777766543 22111122234554 5555432211 1235568888899999998877
Q ss_pred hhhCCCCC-----------ccc------cchhhhhcc-cCceeEEEec-ceEeecCCHHHHHHHHHhccC
Q 014564 218 RWRFPTAN-----------DFG------SEIIPASAN-EQFLKAYLFN-DYWEDIGTIRSFFEANLALTA 268 (422)
Q Consensus 218 ~~~~~~~~-----------~~~------~~~l~~l~~-~~~i~~~~~~-~~~~di~t~~~~~~a~~~ll~ 268 (422)
+....... +-. +.++-..+. -.+..++... ..|..+.+..+|+.....+..
T Consensus 288 ~~~~~~Lp~h~a~Kki~~~d~~~~~~q~Et~i~~~i~~f~~~~~v~V~R~rF~PvKn~~dLl~~~Sd~y~ 357 (420)
T PF01704_consen 288 ERDELQLPIHVAKKKIPYVDNGIKVIQFETAIGFAIFQFDNSFAVEVPRDRFAPVKNTSDLLLVRSDLYD 357 (420)
T ss_dssp HTTTCCS-EEEEEEESSEECTEEEEEEEECGGGGGGGGCTSEEEEEE-GGG--B-SSHHHHHHHHSTTEE
T ss_pred HhccccCccEEcchhcccccCCccEEeehhhhhchHhhccCcEEEEEcHHHcCCccccCcceeeccceec
Confidence 64321100 000 001111111 1222333332 567888888998888876543
No 249
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=97.50 E-value=0.0044 Score=66.52 Aligned_cols=207 Identities=15% Similarity=0.155 Sum_probs=114.3
Q ss_pred eEEEEcCCeeeecC--hHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeeecc--ceeeeeeecCC--------CCCC
Q 014564 131 DVLILSGDHLYRMD--YMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVD--TTVLGLSKQEA--------EEKP 198 (422)
Q Consensus 131 ~~lv~~gD~i~~~~--l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d--~~v~~~~~k~~--------~~~~ 198 (422)
.+||..||.+...+ +.+ -..+++.......+. +-.+.-++++.+.+ +++..+.-||. ....
T Consensus 154 g~li~~gDv~~~f~~~~~~------~~~~~~~~~~~~~~~-~~~~~HGVfv~~~~~~~~~~~~LqKps~eel~a~~~~~~ 226 (974)
T PRK13412 154 HTLIASGDVYIRSEQPLQD------IPEADVVCYGLWVDP-SLATNHGVFVSSRKSPERLDFMLQKPSLEELGGLSKTHL 226 (974)
T ss_pred ceEEEecchhhhccccccC------CCccCeEEEEeccCh-hhccCceEEEeCCCChHHHHHHhcCCCHHHHHhhhcCCe
Confidence 68888999754332 111 122343332222221 11223346666655 45555555553 2235
Q ss_pred ceeeeeEEEEeHHHHHHHHhhhCCC------CCccccchhhhhc----------ccCceeEEEec-ceEeecCCHHHHHH
Q 014564 199 YIASMGVYLFKKEILLNLLRWRFPT------ANDFGSEIIPASA----------NEQFLKAYLFN-DYWEDIGTIRSFFE 261 (422)
Q Consensus 199 ~~~~~Giy~~~~~~l~~ll~~~~~~------~~~~~~~~l~~l~----------~~~~i~~~~~~-~~~~di~t~~~~~~ 261 (422)
.+.++|+|+|+.+....++...... ..++.+|++..|- ++.++...++. +.|+-+||-.+|+.
T Consensus 227 ~l~D~g~~~~~~~a~~~L~~~~~~~~~~~~~~~dlY~Df~~aLg~~~~~~~~el~~l~~~i~~L~~~~F~H~GTs~E~l~ 306 (974)
T PRK13412 227 FLMDIGIWLLSDRAVELLMKRSGKEDGGKLKYYDLYSDFGLALGTHPRIGDDELNALSVAILPLPGGEFYHYGTSRELIS 306 (974)
T ss_pred EEEeeeEEEEChHHHHHHHHhhhcccCCcceeeehHHHHHHhcCCCCCcchhhhcccceEEEEcCCceeEEecCcHHHhc
Confidence 7889999999999887776553221 1133345554432 23455556655 56899999999886
Q ss_pred HHHhccCCCC-CccccCCCCcccccCCCCCCceecCCcccccEEcCCCEEccc-e-eeeeEEcCCcEECCCCEEcceEEE
Q 014564 262 ANLALTAHPP-MFSFYDATKPIYTSRRNLPPSKIDDSKIVDSIISHGSFITSS-F-IEHSVVGIRSRINANVHLKDTMML 338 (422)
Q Consensus 262 a~~~ll~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~-~-v~~s~ig~~~~i~~~~~i~~~~~~ 338 (422)
....+.+..- ....+... . -..|+ +.+.++.++.++.+++. . |++|.||++.+||.+|.|.+....
T Consensus 307 ~~~~~q~~~~~~~~i~~~~------~-~~~~~----~~v~ns~~~~~~s~~~~s~~vE~s~l~~~~~ig~~~Iisgv~~~ 375 (974)
T PRK13412 307 STLAVQNLVTDQRRIMHRK------V-KPHPA----MFVQNAVLSGKLTAENATLWIENSHVGEGWKLASRSIITGVPEN 375 (974)
T ss_pred CchhHHHHhhhhhhhhccc------c-CCCCc----eEEEeeEecCCcccCCCeEEEEeeEecCCeEEcCCcEEeccccc
Confidence 4433322110 00011111 0 11111 23447888888888853 3 577888888888888888776544
Q ss_pred CCccccchhhHHhhhcCCCcceEeCCCcEEeeeEe
Q 014564 339 GADFYETDAEVASLLAEGRVPVGIGENTKIKECII 373 (422)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~~~i 373 (422)
+-+ ..|.+++.|...=+
T Consensus 376 ~~~------------------~~vP~~~ci~~vpl 392 (974)
T PRK13412 376 SWN------------------LDLPEGVCIDVVPV 392 (974)
T ss_pred ccc------------------eecCCCcEEEEEEc
Confidence 322 56777777765443
No 250
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=97.48 E-value=0.002 Score=64.18 Aligned_cols=205 Identities=17% Similarity=0.202 Sum_probs=112.7
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC---Ccceeehhhhhhhhhc--------------C-CcEEEEEeecCh-H
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS--------------G-INKVYILTQYNS-A 67 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~~--------------g-i~~i~Iv~~~~~-~ 67 (422)
.++-+|+||||.||||+ ...||.|++|+ ++ ++++...+++... + -=..+|.++... +
T Consensus 115 gkvavvlLAGGqGTRLG---~~~PKg~~~Iglps~k-slfql~~e~I~~lq~la~~~~~~~~~~~~~IPl~IMTS~~T~~ 190 (493)
T PLN02435 115 GKLAVVLLSGGQGTRLG---SSDPKGCFNIGLPSGK-SLFQLQAERILCVQRLAAQASSEGPGRPVTIHWYIMTSPFTDE 190 (493)
T ss_pred CCEEEEEeCCCcccccC---CCCCccceecCCCCCC-cHHHHHHHHHHHHHHHHHhhcccccCCCCceeEEEeCCcchhH
Confidence 45678899999999997 77999999885 78 9999999887442 1 124466777554 7
Q ss_pred HHHHHHHhhccCCCCccc----CCCeEEEeccCCCC---Cc-CCcccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcC
Q 014564 68 SLNRHLARAYNYGSGVTF----GDGCVEVLAATQTP---GE-AGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSG 137 (422)
Q Consensus 68 ~i~~~l~~~~~~~~~~~~----~~~~v~i~~~~~~~---~~-~~~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~g 137 (422)
+.+++++++..|+..... .+..+..+..+... .+ .-...+.|.++...+... .++++....-+.+.+.+.
T Consensus 191 ~T~~ff~~~~~FGl~~~~V~fF~Q~~~P~~~~dg~i~l~~~~~i~~~P~GnGgiy~aL~~sG~Ld~l~~~Gi~yi~v~~v 270 (493)
T PLN02435 191 ATRKFFESHKYFGLEADQVTFFQQGTLPCVSKDGKFIMETPFKVAKAPDGNGGVYAALKSSRLLEDMASRGIKYVDCYGV 270 (493)
T ss_pred HHHHHHHhCCCCCCCccceEEEecCCcceECCCCCcccCCCcccccCCCCCcHHHHHHHHCCcHHHHHhcCCEEEEEEec
Confidence 789999864324422111 11111111100000 00 001223466655443322 222222234578899999
Q ss_pred Cee-eecChHHHHHHHHHcCCcEEEEEeecCCCCCcccC-Cceee-eccce--eeeeeecCC-----------CCCCcee
Q 014564 138 DHL-YRMDYMDFVQNHRQSGADITISCLPMDDSEKPKGK-DLKAM-AVDTT--VLGLSKQEA-----------EEKPYIA 201 (422)
Q Consensus 138 D~i-~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~-~~~~~-~~d~~--v~~~~~k~~-----------~~~~~~~ 201 (422)
|.+ ....-..++-.+...+.++.+-+.+..+ |... +.+.. ..|++ |.++.+=+. .......
T Consensus 271 DN~L~~~~DP~flG~~~~~~~d~~~kVv~K~~---~~EkvG~i~~~~~~g~~~vvEYsEl~~~~~~~~~~~~g~L~~~~g 347 (493)
T PLN02435 271 DNALVRVADPTFLGYFIDKGVASAAKVVRKAY---PQEKVGVFVRRGKGGPLTVVEYSELDQAMASAINQQTGRLRYCWS 347 (493)
T ss_pred ccccccccCHHHHHHHHhcCCceEEEeeecCC---CCCceeEEEEecCCCCEEEEEeccCCHHHHhccCccccccccchh
Confidence 994 3333345777788888888765544332 2111 22222 23443 455433221 0112455
Q ss_pred eeeEEEEeHHHHHHHHh
Q 014564 202 SMGVYLFKKEILLNLLR 218 (422)
Q Consensus 202 ~~Giy~~~~~~l~~ll~ 218 (422)
++..++|+.++++.+.+
T Consensus 348 nI~~h~fs~~fL~~~~~ 364 (493)
T PLN02435 348 NVCLHMFTLDFLNQVAN 364 (493)
T ss_pred hHHHhhccHHHHHHHHH
Confidence 67888999998887643
No 251
>TIGR02353 NRPS_term_dom non-ribosomal peptide synthetase terminal domain of unknown function. This domain is found exclusively in non-ribosomal peptide synthetases and always as the final domain in the polypeptide. This domain is roughly 700 amino acids in size and is found in polypeptides roughly twice that size.
Probab=97.45 E-value=0.0004 Score=73.07 Aligned_cols=74 Identities=16% Similarity=0.281 Sum_probs=40.8
Q ss_pred ccEEcCCCEEcccee-e--eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCC
Q 014564 301 DSIISHGSFITSSFI-E--HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKN 376 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v-~--~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~ 376 (422)
.+.||+++.|+...+ + .+.||++|.|+++|.|.....-++.+ -. .++.||++|.|. +|+|.++
T Consensus 597 Ga~IG~~v~i~~~~~~~~dlv~IGd~~~I~~~~~i~~h~~~~~~~----------~~---~~v~IG~~~~IG~~a~V~~g 663 (695)
T TIGR02353 597 GVKIGRGVYIDGTDLTERDLVTIGDDSTLNEGSVIQTHLFEDRVM----------KS---DTVTIGDGATLGPGAIVLYG 663 (695)
T ss_pred CCEECCCeEECCeeccCCCCeEECCCCEECCCCEEEecccccccc----------cc---CCeEECCCCEECCCCEECCC
Confidence 467777777765322 1 35788888888888776432211100 00 005566666665 4555555
Q ss_pred cEECCCeEEcc
Q 014564 377 ARIGKNVIIAN 387 (422)
Q Consensus 377 ~~i~~~~~i~~ 387 (422)
++||++++++.
T Consensus 664 ~~IGd~a~Ig~ 674 (695)
T TIGR02353 664 VVMGEGSVLGP 674 (695)
T ss_pred CEECCCCEECC
Confidence 55555555554
No 252
>KOG4750 consensus Serine O-acetyltransferase [Amino acid transport and metabolism]
Probab=97.41 E-value=0.00028 Score=61.38 Aligned_cols=67 Identities=27% Similarity=0.344 Sum_probs=43.4
Q ss_pred eeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEECCCeEEccCCCccc
Q 014564 317 HSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQE 393 (422)
Q Consensus 317 ~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~ 393 (422)
..+||+-+.||.++.|.+.+-+|+++ ...+-+-| .||+|++|. ++.|-.|+.||+|++|+.++.+-+
T Consensus 168 gvvigeTAvvg~~vSilH~Vtlggtg---------k~~gdrhP-~Igd~vliGaGvtILgnV~IGegavIaAGsvV~k 235 (269)
T KOG4750|consen 168 GVVIGETAVVGDNVSILHPVTLGGTG---------KGSGDRHP-KIGDNVLIGAGVTILGNVTIGEGAVIAAGSVVLK 235 (269)
T ss_pred ceeecceeEeccceeeecceeecccc---------ccccccCC-cccCCeEEccccEEeCCeeECCCcEEeccceEEe
Confidence 56777777777777777777777631 11122334 678888886 566777777777777776554433
No 253
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=97.37 E-value=0.00064 Score=59.39 Aligned_cols=63 Identities=24% Similarity=0.349 Sum_probs=32.0
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEe-eeEeCCCcEE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIK-ECIIDKNARI 379 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~-~~~i~~~~~i 379 (422)
+++||+++.+. ..++|....+|.+++|.+.++-++ +.|+..|.+. |.+++.++.|
T Consensus 22 dViIG~nS~l~-----~~V~g~~iivge~v~i~Gdiva~d-------------------iridmw~kv~gNV~ve~dayi 77 (277)
T COG4801 22 DVIIGKNSMLK-----YGVVGEEIIVGERVRIYGDIVAKD-------------------IRIDMWCKVTGNVIVENDAYI 77 (277)
T ss_pred cEEEcccceee-----eeeeeeeEEeccCcEEeeeEEecc-------------------eeeeeeeEeeccEEEcCceEE
Confidence 44555554443 335555555555555555555433 5555555554 3555555555
Q ss_pred CCCeEEcc
Q 014564 380 GKNVIIAN 387 (422)
Q Consensus 380 ~~~~~i~~ 387 (422)
|.++.|.+
T Consensus 78 GE~~sI~g 85 (277)
T COG4801 78 GEFSSIKG 85 (277)
T ss_pred eccceeee
Confidence 55554443
No 254
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.28 E-value=0.00076 Score=54.71 Aligned_cols=92 Identities=12% Similarity=0.235 Sum_probs=54.1
Q ss_pred ccEEcCCCEEccce-e----eeeEEcCCcEECCCCEEcc-------------eEEECCccccchhhHHhhhcCC---Ccc
Q 014564 301 DSIISHGSFITSSF-I----EHSVVGIRSRINANVHLKD-------------TMMLGADFYETDAEVASLLAEG---RVP 359 (422)
Q Consensus 301 ~~~i~~~~~i~~~~-v----~~s~ig~~~~i~~~~~i~~-------------~~~~~~~~~~~~~~~~~~~~~~---~~~ 359 (422)
++.|+++|++.+.. + ---+||+++.|..++.|.+ -.++|.. ++|.=| +.
T Consensus 26 dvti~~gcVvHP~a~~iA~aGPI~iGEnniiEEyA~i~n~~~~~~~~d~~~~pmiIGt~---------NvFeVgc~s~A- 95 (190)
T KOG4042|consen 26 DVTIKEGCVVHPFAVFIATAGPIYIGENNIIEEYAVIRNRLEPGAVWDSDGQPMIIGTW---------NVFEVGCKSSA- 95 (190)
T ss_pred ceEecCCcEecceEEEEcccCCEEEccCchhhhHHHHHhhcCCCCccCCCCCeEEEecc---------ceEEeechhhh-
Confidence 78899999988632 2 1357888888888887755 2233321 111111 01
Q ss_pred eEeCCCcEEe-eeEeCCCcEECCCeEEccCCCcccccccCCCeE
Q 014564 360 VGIGENTKIK-ECIIDKNARIGKNVIIANSEGIQEADRSAEGFY 402 (422)
Q Consensus 360 ~~i~~~~~i~-~~~i~~~~~i~~~~~i~~~~~~~~~~~~~~~~~ 402 (422)
..+|++.++. .|.+|++|.+..+|+++.+..+.....+.+|..
T Consensus 96 ~kvGd~NVieskayvg~gv~vssgC~vGA~c~v~~~q~lpent~ 139 (190)
T KOG4042|consen 96 KKVGDRNVIESKAYVGDGVSVSSGCSVGAKCTVFSHQNLPENTS 139 (190)
T ss_pred hhhcCcceEeeeeEecCCcEEcCCceeccceEEecccccCCcce
Confidence 3566666666 477777777777777776444433444444433
No 255
>KOG4042 consensus Dynactin subunit p27/WS-3, involved in transport of organelles along microtubules [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=97.23 E-value=0.0007 Score=54.90 Aligned_cols=11 Identities=18% Similarity=0.238 Sum_probs=5.8
Q ss_pred ccEEcCCCEEc
Q 014564 301 DSIISHGSFIT 311 (422)
Q Consensus 301 ~~~i~~~~~i~ 311 (422)
+.+||++++|.
T Consensus 47 PI~iGEnniiE 57 (190)
T KOG4042|consen 47 PIYIGENNIIE 57 (190)
T ss_pred CEEEccCchhh
Confidence 34555555555
No 256
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=97.10 E-value=0.005 Score=60.81 Aligned_cols=85 Identities=15% Similarity=0.230 Sum_probs=46.8
Q ss_pred CeEEEEcCCeeeecChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeeeccc---------eeeeeeecCC------
Q 014564 130 EDVLILSGDHLYRMDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDT---------TVLGLSKQEA------ 194 (422)
Q Consensus 130 ~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~---------~v~~~~~k~~------ 194 (422)
.-++|..+|.++...-...+ .+ .+.+++.+..+... +-.+.=+++.++.++ .+..|.-||.
T Consensus 54 pGv~V~s~D~vl~~~~~~~~-~~--~~~g~~~la~p~~~-~~at~HGVfv~~~~~~~~~~~~~~~v~~~L~KpS~eem~~ 129 (414)
T PF07959_consen 54 PGVLVCSGDMVLSVPDDPLI-DW--DEPGVTALAHPSSL-EYATNHGVFVLDRQGPDEEDLEYREVKDFLQKPSEEEMRA 129 (414)
T ss_pred cceEEEecccccccCccccC-CC--CCCCEEEEEeeCCH-HHhcCCeEEEeCCCCCccccchhhhHHHhhcCCCHHHHHh
Confidence 45899999943322211111 12 22456555555432 111222477777766 5556655542
Q ss_pred -----CCCCceeeeeEEEEeHHHHHHHHh
Q 014564 195 -----EEKPYIASMGVYLFKKEILLNLLR 218 (422)
Q Consensus 195 -----~~~~~~~~~Giy~~~~~~l~~ll~ 218 (422)
+......++|++.|+.+..+.++.
T Consensus 130 ~~av~~~~~~~ldsG~~~~s~~~~e~L~~ 158 (414)
T PF07959_consen 130 SGAVLPDGNVLLDSGIVFFSSKAVESLLY 158 (414)
T ss_pred CCcccCCCcccccccceeccHHHHHHHHH
Confidence 122456688999999987776654
No 257
>cd06424 UGGPase UGGPase catalyzes the synthesis of UDP-Glucose/UDP-Galactose. UGGPase: UDP-Galactose/Glucose Pyrophosphorylase catalyzes the reversible production of UDP-Glucose/UDP-Galactose and pyrophosphate (PPi) from Glucose-1-phosphate/Galactose-1-phosphate and UTP. Its dual substrate specificity distinguishes it from the single substrate enzyme UDP-glucose pyrophosphorylase. It may play a key role in the galactose metabolism in raffinose oligosaccharide (RFO) metabolizing plants. RFO raffinose is a major photoassimilate and is a galactosylderivative of sucrose (Suc) containing a galactose (Gal) moiety. Upon arriving at the sink tissue, the Gal moieties of the RFOs are initially removed by alpha-galactosidase and then are phosphorylated to Gal-1-P. Gal-1-P is converted to UDP-Gal. The UDP-Gal is further metabolized to UDP-Glc via an epimerase reaction. The UDP-Glc can be directly utilized in cell wall metabolism or in Suc synthesis. However, for the Suc synthesis UDP-Glc must be f
Probab=96.99 E-value=0.0031 Score=59.36 Aligned_cols=203 Identities=11% Similarity=0.079 Sum_probs=107.5
Q ss_pred eEEEEcCCCCccCCcccccCcCcceee---CCcceeehhhhhhhhhcC---------CcEEEEEeecCh-HHHHHHHHhh
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPI---GGAYRLIDVPMSNCINSG---------INKVYILTQYNS-ASLNRHLARA 76 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv---~gk~pli~~~l~~l~~~g---------i~~i~Iv~~~~~-~~i~~~l~~~ 76 (422)
-+|+||||.||||+ ..-||.++|| .|+ +++++.++++.... .-.++|.++... ++.+++++++
T Consensus 2 a~vllaGG~GTRLG---~~~pKg~~~v~~~~~~-s~f~l~~~~i~~l~~~~~~~~~~~IPl~IMTS~~Th~~T~~~fe~n 77 (315)
T cd06424 2 VFVLVAGGLGERLG---YSGIKIGLPVELTTNT-TYLQYYLNYIRAFQEASKKGEKMEIPFVIMTSDDTHSKTLKLLEEN 77 (315)
T ss_pred EEEEecCCCccccC---CCCCceeeeccCCCCC-cHHHHHHHHHHHHHHHhhccCCCceeEEEECCCchhHHHHHHHHHC
Confidence 37899999999997 7899999999 488 99999999986632 235567777554 7788888764
Q ss_pred ccCCCCcc----cCCCeEEEec-cCCCC------CcCCcccccCcHHHHHHHHH--HhcCCCCCccCeEEEEcCCee-ee
Q 014564 77 YNYGSGVT----FGDGCVEVLA-ATQTP------GEAGKRWFQGTADAVRQFHW--LFEDPRNKVIEDVLILSGDHL-YR 142 (422)
Q Consensus 77 ~~~~~~~~----~~~~~v~i~~-~~~~~------~~~~~~~~~g~~~al~~~~~--~l~~~~~~~~~~~lv~~gD~i-~~ 142 (422)
-.|+.... |.+..+..+. .+... ...-...+.|.++....... .++++....-+.+.+..-|.. ..
T Consensus 78 ~yFGl~~~~V~fF~Q~~~P~l~~~~g~l~~~l~~~~~i~~~P~GhGdiy~aL~~sGlLd~l~~~Gikyi~v~~vdN~L~~ 157 (315)
T cd06424 78 NYFGLEKDQVHILKQEKVFCLIDNDAHLALDPDNTYSILTKPHGHGDVHTLLYNSGLLKKWIEAGYKWLVFFQDTNALAF 157 (315)
T ss_pred CccCCCcccEEEEecCceEEEecCCCCcccccCCCCccccCCCCchHHHHHHHHCCcHHHHHHCCCEEEEEEecchhhhh
Confidence 32442211 1111122221 00000 00011223466655443321 111111123466677766663 33
Q ss_pred cChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceee-e-ccce--e--eeeeecCC------------C----CCCce
Q 014564 143 MDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAM-A-VDTT--V--LGLSKQEA------------E----EKPYI 200 (422)
Q Consensus 143 ~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~-~-~d~~--v--~~~~~k~~------------~----~~~~~ 200 (422)
.....++-.+...+.++...+.+..+.| .-++... + .|++ | .++.+=+. . ...+-
T Consensus 158 ~adP~fiG~~~~~~~d~~~k~v~~~~~E---~vG~~~~~~~~~g~~~v~nvEYsel~~~~~~~~~~~g~~~~~~~~s~f~ 234 (315)
T cd06424 158 KAIPAVLGVSATKSLDMNSLTVPRKPKE---AIGALCKLTKNNGKSMTINVEYNQLDPLLRASGKDDGDVDDKTGFSPFP 234 (315)
T ss_pred ccChhhEEEEecCCCceEeEEEeCCCCC---ceeeEEEEecCCCceEEEEEEeecCCHHHHhcCCCCCCcccccccccCC
Confidence 3333455555666777766555543322 1122221 1 3333 3 33322110 0 11235
Q ss_pred eeeeEEEEeHHHHHHHHhh
Q 014564 201 ASMGVYLFKKEILLNLLRW 219 (422)
Q Consensus 201 ~~~Giy~~~~~~l~~ll~~ 219 (422)
.+++.++|+.+.+.+.++.
T Consensus 235 gNi~~~~f~l~~~~~~l~~ 253 (315)
T cd06424 235 GNINQLVFSLGPYMDELEK 253 (315)
T ss_pred CeeeeEEEeHHHHHHHHhh
Confidence 6889999998877766654
No 258
>TIGR03552 F420_cofC 2-phospho-L-lactate guanylyltransferase CofC. Members of this protein family are the CofC enzyme of coenzyme F420 biosynthesis.
Probab=96.88 E-value=0.0055 Score=54.06 Aligned_cols=85 Identities=16% Similarity=0.168 Sum_probs=56.7
Q ss_pred eeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHH
Q 014564 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWL 120 (422)
Q Consensus 41 pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~ 120 (422)
|||.|+++.+.++++++++++++. +++.++... + + +.++.... .|...+++.+.+.
T Consensus 31 ~ll~~~l~~l~~~~~~~vvvv~~~--~~~~~~~~~-~----~-------v~~i~~~~----------~G~~~si~~al~~ 86 (195)
T TIGR03552 31 AMLRDVITALRGAGAGAVLVVSPD--PALLEAARN-L----G-------APVLRDPG----------PGLNNALNAALAE 86 (195)
T ss_pred HHHHHHHHHHHhcCCCCEEEECCC--HHHHHHHHh-c----C-------CEEEecCC----------CCHHHHHHHHHHH
Confidence 999999999999888888888763 344444321 1 1 23332211 2789999999877
Q ss_pred hcCCCCCccCeEEEEcCCe-eeec-ChHHHHHHHH
Q 014564 121 FEDPRNKVIEDVLILSGDH-LYRM-DYMDFVQNHR 153 (422)
Q Consensus 121 l~~~~~~~~~~~lv~~gD~-i~~~-~l~~ll~~~~ 153 (422)
+.. ..+.++++.||+ ++.. .+..+++.+.
T Consensus 87 ~~~----~~~~vlv~~~D~P~l~~~~i~~l~~~~~ 117 (195)
T TIGR03552 87 ARE----PGGAVLILMADLPLLTPRELKRLLAAAT 117 (195)
T ss_pred hhc----cCCeEEEEeCCCCCCCHHHHHHHHHhcc
Confidence 642 135899999999 4444 4677777653
No 259
>PF00132 Hexapep: Bacterial transferase hexapeptide (six repeats); InterPro: IPR001451 A variety of bacterial transferases contain a repeat structure composed of tandem repeats of a [LIV]-G-X(4) hexapeptide, which, in the tertiary structure of LpxA (UDP N-acetylglucosamine acyltransferase) [], has been shown to form a left-handed parallel beta helix. A number of different transferase protein families contain this repeat, such as galactoside acetyltransferase-like proteins [], the gamma-class of carbonic anhydrases [], and tetrahydrodipicolinate-N-succinlytransferases (DapD), the latter containing an extra N-terminal 3-helical domain [].; PDB: 3DK5_A 3F1X_A 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 1T3D_C 3R8Y_F ....
Probab=96.85 E-value=0.0014 Score=40.46 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=5.6
Q ss_pred EcCCcEECCCCEEcc
Q 014564 320 VGIRSRINANVHLKD 334 (422)
Q Consensus 320 ig~~~~i~~~~~i~~ 334 (422)
||+++.|++++.|.+
T Consensus 4 Ig~~~~i~~~~~i~~ 18 (36)
T PF00132_consen 4 IGDNVIIGPNAVIGG 18 (36)
T ss_dssp EETTEEEETTEEEET
T ss_pred EcCCCEECCCcEecC
Confidence 333333333333333
No 260
>COG4801 Predicted acyltransferase [General function prediction only]
Probab=96.83 E-value=0.0064 Score=53.33 Aligned_cols=64 Identities=25% Similarity=0.325 Sum_probs=49.4
Q ss_pred ccEEcCCCEEccceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhhcCCCcceEeCCCcEEee-eEeCCCcEE
Q 014564 301 DSIISHGSFITSSFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLLAEGRVPVGIGENTKIKE-CIIDKNARI 379 (422)
Q Consensus 301 ~~~i~~~~~i~~~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~i~~~~~i 379 (422)
+..+|+++.| ...+++.+++|+.||.+.++++.+++ ++||..+.|.. -++...-.|
T Consensus 39 ~iivge~v~i-----~Gdiva~diridmw~kv~gNV~ve~d------------------ayiGE~~sI~gkl~v~gdLdi 95 (277)
T COG4801 39 EIIVGERVRI-----YGDIVAKDIRIDMWCKVTGNVIVEND------------------AYIGEFSSIKGKLTVIGDLDI 95 (277)
T ss_pred eEEeccCcEE-----eeeEEecceeeeeeeEeeccEEEcCc------------------eEEeccceeeeeEEEeccccc
Confidence 3444444444 45677889999999999999998886 88999999874 777778888
Q ss_pred CCCeEEcc
Q 014564 380 GKNVIIAN 387 (422)
Q Consensus 380 ~~~~~i~~ 387 (422)
|+++.|.+
T Consensus 96 g~dV~Ieg 103 (277)
T COG4801 96 GADVIIEG 103 (277)
T ss_pred ccceEEec
Confidence 88888875
No 261
>COG4284 UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=96.73 E-value=0.035 Score=54.34 Aligned_cols=195 Identities=18% Similarity=0.241 Sum_probs=104.4
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC-Ccceeehhhhhhhhhc----CC-cEEEEEeecChHHHHHHHHh-hccC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG-GAYRLIDVPMSNCINS----GI-NKVYILTQYNSASLNRHLAR-AYNY 79 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~-gk~pli~~~l~~l~~~----gi-~~i~Iv~~~~~~~i~~~l~~-~~~~ 79 (422)
.++-+|+||||.|+||+ ..-||.+++|. |+ ++++.+.+.+..+ ++ -..+|.++...++-..+.+. .| +
T Consensus 104 ~klAvl~LaGGqGtrlG---~~gPKgl~~V~~gk-s~~dl~~~qIk~ln~~~~~~vP~~iMtS~nt~~t~s~f~~~~Y-~ 178 (472)
T COG4284 104 GKLAVLKLAGGQGTRLG---CDGPKGLFEVKDGK-SLFDLQAEQIKYLNRQYNVDVPLYIMTSLNTEETDSYFKSNDY-F 178 (472)
T ss_pred CceEEEEecCCcccccc---cCCCceeEEecCCC-cHHHHHHHHHHHHHHHhCCCCCEEEEecCCcHHHHHHHhhhhh-c
Confidence 46778999999999997 67999999999 78 9999988887653 32 34556666666555555543 33 3
Q ss_pred CC-Cccc---CCCeEE-EeccCCCC-----CcCCcccccCcH---HHHHH--HHHHhcCCCCCccCeEEEEcCCeee-ec
Q 014564 80 GS-GVTF---GDGCVE-VLAATQTP-----GEAGKRWFQGTA---DAVRQ--FHWLFEDPRNKVIEDVLILSGDHLY-RM 143 (422)
Q Consensus 80 ~~-~~~~---~~~~v~-i~~~~~~~-----~~~~~~~~~g~~---~al~~--~~~~l~~~~~~~~~~~lv~~gD~i~-~~ 143 (422)
+. ..++ .+..+. +......+ +....-.+.|.+ .+|.. ..+.+.. ...+.+.|.+.|.+. ..
T Consensus 179 ~~~k~~I~fF~Q~~~P~~~~~sg~~~~~~~~~~~~~~P~GnG~lf~aL~~SG~le~l~~---~G~e~lfV~nIDNL~~~v 255 (472)
T COG4284 179 GLDKEDIFFFVQSLFPRLLSDSGLPFLESDDSNLAWYPPGNGDLFKALKSSGILEKLIA---QGIEYLFVSNIDNLGATV 255 (472)
T ss_pred CCCHHHeEEEecCCcceeecccCccccccCCcccccCCCCCccHHHHHHhcchHHHHHh---cCceEEEEeccccccccc
Confidence 32 2111 111111 11110000 000011122444 44443 1222211 346899999999943 33
Q ss_pred ChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCcee---eeccceeeeeeecCCCC----------CCceee-eeEEEEe
Q 014564 144 DYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKA---MAVDTTVLGLSKQEAEE----------KPYIAS-MGVYLFK 209 (422)
Q Consensus 144 ~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~---~~~d~~v~~~~~k~~~~----------~~~~~~-~Giy~~~ 209 (422)
|+ .++.++...+.+.++=.+.... +... +.+ .+..-+++++.+-+... .....+ .++++++
T Consensus 256 D~-~~lg~~~~~~~e~~~e~t~Kt~---a~ek-vG~Lv~~~g~~rllEysev~~~~~~~~~s~~~~~~~n~Nni~l~~~~ 330 (472)
T COG4284 256 DL-KFLGFMAETNYEYLMETTDKTK---ADEK-VGILVTYDGKLRLLEYSEVPNEHREEFTSDGKLKYFNTNNIWLHLFS 330 (472)
T ss_pred CH-HHHHHHHhcCcceeEEEeeccc---cccc-ceEEEEeCCceEEEEEecCChhHhhhhccccceeeeccccceeehhH
Confidence 43 4777788888887664443221 2111 222 23334677776544321 112233 6777777
Q ss_pred HHHHH
Q 014564 210 KEILL 214 (422)
Q Consensus 210 ~~~l~ 214 (422)
...+.
T Consensus 331 ~~~l~ 335 (472)
T COG4284 331 VKFLK 335 (472)
T ss_pred HHHHH
Confidence 76554
No 262
>PLN02830 UDP-sugar pyrophosphorylase
Probab=96.62 E-value=0.022 Score=58.62 Aligned_cols=156 Identities=18% Similarity=0.172 Sum_probs=91.9
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC---Ccceeehhhhhhhhhc------------CCcEEEEEeecCh-HHHH
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS------------GINKVYILTQYNS-ASLN 70 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~~------------gi~~i~Iv~~~~~-~~i~ 70 (422)
.++-+|+||||.||||+ ..-||-++|++ |+ ++++..++++... ..-..+|.++... ++..
T Consensus 127 ~kvavllLaGGlGTRLG---~~~pK~~lpv~~~~gk-t~lql~~e~I~~lq~la~~~~~~~~~~IPl~IMTS~~T~~~T~ 202 (615)
T PLN02830 127 GNAAFVLVAGGLGERLG---YSGIKVALPTETATGT-CYLQLYIESILALQERAKKRKAKKGRKIPLVIMTSDDTHARTL 202 (615)
T ss_pred CcEEEEEecCCcccccC---CCCCCcceecccCCCC-cHHHHHHHHHHHHHHHHHHhcccCCCCceEEEECCcchhHHHH
Confidence 46778999999999997 67899999983 78 9999999998663 1134677777554 6788
Q ss_pred HHHHhhccCCCCcc----cCCCeEEEec--------cCCCCCcCCcccccCcHHHHHHHH--HHhcCCCCCccCeEEEEc
Q 014564 71 RHLARAYNYGSGVT----FGDGCVEVLA--------ATQTPGEAGKRWFQGTADAVRQFH--WLFEDPRNKVIEDVLILS 136 (422)
Q Consensus 71 ~~l~~~~~~~~~~~----~~~~~v~i~~--------~~~~~~~~~~~~~~g~~~al~~~~--~~l~~~~~~~~~~~lv~~ 136 (422)
++++++..|+.... |.+..+..+. ...+. ..-...+.|.++...... -.++++.....+.+.+..
T Consensus 203 ~~~~~n~~FGl~~~~v~~F~Q~~~P~~~~~~g~~~l~~~d~-~~i~~~P~GhGdi~~aL~~sGlLd~l~~~G~~yi~v~~ 281 (615)
T PLN02830 203 KLLERNDYFGMDPDQVTLLKQEKVACLMDNDARLALDPNDP-YKIQTKPHGHGDVHALLYSSGLLDKWLSAGKKWVVFFQ 281 (615)
T ss_pred HHHHHCCccCCCccceEEEEcCcceeEecCCCcccccCCCC-CccccCCCCccHHHHHHHHCCCHHHHHHcCCEEEEEEe
Confidence 88887432442221 1111111111 00000 000112345554443332 112222223357888888
Q ss_pred CCe-eeecChHHHHHHHHHcCCcEEEEEeecC
Q 014564 137 GDH-LYRMDYMDFVQNHRQSGADITISCLPMD 167 (422)
Q Consensus 137 gD~-i~~~~l~~ll~~~~~~~~~~tl~~~~~~ 167 (422)
.|. +.......++-.+...+.++.+.+.+..
T Consensus 282 vDN~L~~~Adp~flG~~~~~~~d~~~kvv~K~ 313 (615)
T PLN02830 282 DTNGLVFKAIPAALGVSATKGFDMNSLAVPRK 313 (615)
T ss_pred ccchhhhcccHHHhHHHHhcCCceEEEEEECC
Confidence 888 3333346678888888888877766554
No 263
>PF14602 Hexapep_2: Hexapeptide repeat of succinyl-transferase; PDB: 2P2O_B 2IC7_B 2RIJ_A 3FSY_B 3FSX_D 3CJ8_A 1QRE_A 1QRG_A 1THJ_B 1QRM_A ....
Probab=95.96 E-value=0.012 Score=35.75 Aligned_cols=13 Identities=31% Similarity=0.391 Sum_probs=4.2
Q ss_pred EcCCcEECCCCEE
Q 014564 320 VGIRSRINANVHL 332 (422)
Q Consensus 320 ig~~~~i~~~~~i 332 (422)
||++|.|+++|.|
T Consensus 4 IG~~~~ig~~~~i 16 (34)
T PF14602_consen 4 IGDNCFIGANSTI 16 (34)
T ss_dssp E-TTEEE-TT-EE
T ss_pred ECCCEEECccccc
Confidence 3444444444443
No 264
>cd00761 Glyco_tranf_GTA_type Glycosyltransferase family A (GT-A) includes diverse families of glycosyl transferases with a common GT-A type structural fold. Glycosyltransferases (GTs) are enzymes that synthesize oligosaccharides, polysaccharides, and glycoconjugates by transferring the sugar moiety from an activated nucleotide-sugar donor to an acceptor molecule, which may be a growing oligosaccharide, a lipid, or a protein. Based on the stereochemistry of the donor and acceptor molecules, GTs are classified as either retaining or inverting enzymes. To date, all GT structures adopt one of two possible folds, termed GT-A fold and GT-B fold. This hierarchy includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. The majority of the proteins in this superfamily are Glycosyltransferase family 2 (GT-2) proteins. But it als
Probab=94.76 E-value=0.46 Score=38.61 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred ceeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
++|..|+.+++.++++.+.+.+ ..+++|+.+...+...+.+.+.... ... +....... ..|.
T Consensus 2 ii~~~~~~~~l~~~l~s~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~------~~~-~~~~~~~~---------~~g~ 65 (156)
T cd00761 2 IIPAYNEEPYLERCLESLLAQTYPNFEVIVVDDGSTDGTLEILEEYAKK------DPR-VIRVINEE---------NQGL 65 (156)
T ss_pred EEeecCcHHHHHHHHHHHHhCCccceEEEEEeCCCCccHHHHHHHHHhc------CCC-eEEEEecC---------CCCh
Confidence 3556555589999999999987 7889998887766666666553210 000 11221111 2378
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecCh-HHHHHHH
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNH 152 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~ll~~~ 152 (422)
+.++..+..... .+.++++.+|.++..+. ..++..+
T Consensus 66 ~~~~~~~~~~~~------~d~v~~~d~D~~~~~~~~~~~~~~~ 102 (156)
T cd00761 66 AAARNAGLKAAR------GEYILFLDADDLLLPDWLERLVAEL 102 (156)
T ss_pred HHHHHHHHHHhc------CCEEEEECCCCccCccHHHHHHHHH
Confidence 888888887775 48899999999887774 4443333
No 265
>PF00535 Glycos_transf_2: Glycosyl transferase family 2; InterPro: IPR001173 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases. These enzymes catalyse the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. A classification of glycosyltransferases using nucleotide diphospho-sugar, nucleotide monophospho-sugar and sugar phosphates (2.4.1.- from EC) and related proteins into distinct sequence based families has been described []. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The same three-dimensional fold is expected to occur within each of the families. Because 3-D structures are better conserved than sequences, several of the families defined on the basis of sequence similarities may have similar 3-D structures and therefore form 'clans'. This domain is found in a diverse family of glycosyl transferases that transfer the sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; PDB: 2Z87_A 2Z86_B 2D7R_A 2D7I_A 3CKN_A 3CKQ_A 3CKJ_A 3CKV_A 3CKO_A 2FFU_A ....
Probab=92.70 E-value=1.9 Score=35.70 Aligned_cols=108 Identities=12% Similarity=0.148 Sum_probs=68.6
Q ss_pred ceeeCCcceeehhhhhhhhhc--CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~--gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
.+|..|+...|..+|+.+.+. ...+|+|+-+...+...+.+.+... ... .++++..++. .|.
T Consensus 3 vip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~~~~~~~~~~~--~~~-----~i~~i~~~~n---------~g~ 66 (169)
T PF00535_consen 3 VIPTYNEAEYLERTLESLLKQTDPDFEIIVVDDGSTDETEEILEEYAE--SDP-----NIRYIRNPEN---------LGF 66 (169)
T ss_dssp EEEESS-TTTHHHHHHHHHHHSGCEEEEEEEECS-SSSHHHHHHHHHC--CST-----TEEEEEHCCC---------SHH
T ss_pred EEEeeCCHHHHHHHHHHHhhccCCCEEEEEeccccccccccccccccc--ccc-----cccccccccc---------ccc
Confidence 356666656788888888776 5677777766554455555544321 011 1455543333 378
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEEE
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
+.++..+..... .+.++++..|.+...+ +..+++.+.+.+.++.+.
T Consensus 67 ~~~~n~~~~~a~------~~~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~~~~ 113 (169)
T PF00535_consen 67 SAARNRGIKHAK------GEYILFLDDDDIISPDWLEELVEALEKNPPDVVIG 113 (169)
T ss_dssp HHHHHHHHHH--------SSEEEEEETTEEE-TTHHHHHHHHHHHCTTEEEEE
T ss_pred cccccccccccc------eeEEEEeCCCceEcHHHHHHHHHHHHhCCCcEEEE
Confidence 888888888776 4799999999988887 788888888866655443
No 266
>KOG2638 consensus UDP-glucose pyrophosphorylase [Carbohydrate transport and metabolism]
Probab=89.67 E-value=21 Score=34.79 Aligned_cols=342 Identities=15% Similarity=0.170 Sum_probs=157.4
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhc----CCc-EEEEEeecCh-HHHHHHHHhhccCC
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS----GIN-KVYILTQYNS-ASLNRHLARAYNYG 80 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~----gi~-~i~Iv~~~~~-~~i~~~l~~~~~~~ 80 (422)
.++..+=|-||.|+-|+ -.-||.+++|-+-.+++|-++.+.... +++ ..++.-++.. ++.++.++++. +
T Consensus 102 ~KLavlKLNGGlGttmG---c~gPKS~ieVR~g~tFLDL~V~QIe~LN~~Y~~dVPlvLMNSfnTdedT~kil~ky~--~ 176 (498)
T KOG2638|consen 102 NKLAVLKLNGGLGTTMG---CKGPKSVIEVRDGLTFLDLTVRQIENLNKTYNVDVPLVLMNSFNTDEDTQKILKKYA--G 176 (498)
T ss_pred hheEEEEecCCcCCccc---cCCCceeEEEcCCCchhHHHHHHHHHHHhhcCCCCCEEEecccccchHHHHHHHHhc--C
Confidence 35567778899999997 678999999964438888766655442 322 2333344444 66777776654 2
Q ss_pred CCccc--------CCCe-EEEeccCCCCCcC-Cccccc-CcHHHHHHH------HHHhcCCCCCccCeEEEEcCCeee-e
Q 014564 81 SGVTF--------GDGC-VEVLAATQTPGEA-GKRWFQ-GTADAVRQF------HWLFEDPRNKVIEDVLILSGDHLY-R 142 (422)
Q Consensus 81 ~~~~~--------~~~~-v~i~~~~~~~~~~-~~~~~~-g~~~al~~~------~~~l~~~~~~~~~~~lv~~gD~i~-~ 142 (422)
...+| .+-. -..++.....++. ...||. |.++-.... ..++. ...+.++|.+.|.+. .
T Consensus 177 ~kv~i~TF~QS~~PRi~~etlLPv~~~~~d~~~d~WYPPGHGd~f~sl~nSG~Ld~lla----qGkEylFVSNiDNLGAt 252 (498)
T KOG2638|consen 177 SKVDIKTFNQSKYPRIDKETLLPVPKLEADSDNEAWYPPGHGDLFDSLHNSGLLDKLLA----QGKEYLFVSNIDNLGAT 252 (498)
T ss_pred CceeEEEeccccCCccccccccCCCcccCCCCcccccCCCCccHHHHHhccchHHHHHh----CCceEEEEeccccccce
Confidence 22222 1100 1122211111110 112222 443322221 12333 236899999999964 4
Q ss_pred cChHHHHHHHHHcCCcEEEEEeecCCCCCcccCCceeeeccce--eeeeeecCCCC--------CCceeeeeEEEEeHHH
Q 014564 143 MDYMDFVQNHRQSGADITISCLPMDDSEKPKGKDLKAMAVDTT--VLGLSKQEAEE--------KPYIASMGVYLFKKEI 212 (422)
Q Consensus 143 ~~l~~ll~~~~~~~~~~tl~~~~~~~~~k~~~~~~~~~~~d~~--v~~~~~k~~~~--------~~~~~~~Giy~~~~~~ 212 (422)
.||. +++...+.+....|-+++... ...-+-..++-+|+ ++++.--|.+. .-.+.++.--.+.-..
T Consensus 253 vDL~-ILn~~i~~~~ey~MEvTdKT~---aDvKgGtLi~y~G~lrlLEiaQVP~ehv~eFkS~kkFkifNTNNlWinLka 328 (498)
T KOG2638|consen 253 VDLN-ILNHVINNNIEYLMEVTDKTR---ADVKGGTLIQYEGKLRLLEIAQVPKEHVDEFKSIKKFKIFNTNNLWINLKA 328 (498)
T ss_pred eeHH-HHHHHhcCCCceEEEecccch---hhcccceEEeecCEEEEEEeccCChhHhhhhccceeEEEeccCCeEEehHH
Confidence 5553 556555556565554432211 11111112233454 34442222110 0123455555556556
Q ss_pred HHHHHhhhCCCCCcc--------ccchhh------hhccc-CceeEEEe-cceEeecCCHHHHHHHHHhccCCCCCcccc
Q 014564 213 LLNLLRWRFPTANDF--------GSEIIP------ASANE-QFLKAYLF-NDYWEDIGTIRSFFEANLALTAHPPMFSFY 276 (422)
Q Consensus 213 l~~ll~~~~~~~~~~--------~~~~l~------~l~~~-~~i~~~~~-~~~~~di~t~~~~~~a~~~ll~~~~~~~~~ 276 (422)
++.+++...-..+-. ..++++ ..++. ..-.++.. -..|..+.+..|++-....+.....+.--+
T Consensus 329 vKrlve~~~l~meIi~N~kti~~~~~viQleTa~GaaIk~F~na~gv~VpRsRFlPVKt~sDLlLv~S~Ly~ld~Gsl~l 408 (498)
T KOG2638|consen 329 VKKLVEENALNMEIIVNPKTIDRGIEVIQLETAAGAAIKFFDNAIGVNVPRSRFLPVKTCSDLLLVMSNLYDLDNGSLTL 408 (498)
T ss_pred HHHHhhcCcccceeecChhhccCCceEEEEhhhhhHHHHhCCCceeeeccccccccccccccceeeecceeeccCCeEEe
Confidence 666665432111100 111111 11111 11111111 235667777777766655554433221111
Q ss_pred CCCCcccc--cCCCCCCceecCCcccccEEcCCCEEcc-ceeeeeEEcCCcEECCCCEEcceEEECCccccchhhHHhhh
Q 014564 277 DATKPIYT--SRRNLPPSKIDDSKIVDSIISHGSFITS-SFIEHSVVGIRSRINANVHLKDTMMLGADFYETDAEVASLL 353 (422)
Q Consensus 277 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~i~~-~~v~~s~ig~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~ 353 (422)
.+...-.+ .+.+++. + ..++ .+.+.--.|-. -...+-.|..++..|.++.+++.+++-++
T Consensus 409 ~~~r~~~t~P~vkLg~~--F--~kv~-~f~~rfp~iP~ileLdhLtVsGdV~FGknV~LkGtViIia~------------ 471 (498)
T KOG2638|consen 409 SPSRFGPTPPLVKLGSE--F--KKVE-DFLGRFPGIPDILELDHLTVSGDVWFGKNVSLKGTVIIIAN------------ 471 (498)
T ss_pred chhhcCCCCCeeecchh--h--hHHH-HHHhcCCCCCccceeceEEEeccEEeccceEEeeEEEEEec------------
Confidence 12111101 1111110 1 0010 00000000000 01225556668999999999998887542
Q ss_pred cCCCcceEeCCCcEEeeeEeCCCcEEC
Q 014564 354 AEGRVPVGIGENTKIKECIIDKNARIG 380 (422)
Q Consensus 354 ~~~~~~~~i~~~~~i~~~~i~~~~~i~ 380 (422)
++.. ..|.+|+.+.|+++-.|+.|-
T Consensus 472 -~~~~-i~IP~gsVLEn~~v~gn~~il 496 (498)
T KOG2638|consen 472 -EGDR-IDIPDGSVLENKIVSGNLRIL 496 (498)
T ss_pred -CCCe-eecCCCCeeecceEecccccc
Confidence 1111 568899999998888887764
No 267
>PF07959 Fucokinase: L-fucokinase; InterPro: IPR012887 In the salvage pathway of GDP-L-fucose, free cytosolic fucose is phosphorylated by L-fucokinase to form L-fucose-L-phosphate, which is then further converted to GDP-L-fucose in the reaction catalysed by GDP-L-fucose pyrophosphorylase []. ; GO: 0016772 transferase activity, transferring phosphorus-containing groups
Probab=89.22 E-value=0.67 Score=45.92 Aligned_cols=27 Identities=19% Similarity=0.220 Sum_probs=17.1
Q ss_pred ccCceeEEEec-ceEeecCCHHHHHHHH
Q 014564 237 NEQFLKAYLFN-DYWEDIGTIRSFFEAN 263 (422)
Q Consensus 237 ~~~~i~~~~~~-~~~~di~t~~~~~~a~ 263 (422)
++..+...... +.|+-++|-.+|++-.
T Consensus 225 r~~~l~vv~l~~~~F~H~GTs~E~L~~l 252 (414)
T PF07959_consen 225 RGTPLNVVPLPNGKFYHFGTSREYLEHL 252 (414)
T ss_pred hhccccccccCCceEEEecCCHHHHHhh
Confidence 34455555554 6677788888766653
No 268
>cd04186 GT_2_like_c Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=88.10 E-value=8.4 Score=31.83 Aligned_cols=98 Identities=10% Similarity=0.093 Sum_probs=63.4
Q ss_pred ceeeCCcceeehhhhhhhhhc--CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~--gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
++|.-|+..++..+++.+.+. ...+++|+.....+...+.+.+.. . .+.++..... .|.
T Consensus 2 ii~~~~~~~~l~~~l~sl~~~~~~~~~iiivdd~s~~~~~~~~~~~~---~-------~~~~~~~~~~---------~g~ 62 (166)
T cd04186 2 IIVNYNSLEYLKACLDSLLAQTYPDFEVIVVDNASTDGSVELLRELF---P-------EVRLIRNGEN---------LGF 62 (166)
T ss_pred EEEecCCHHHHHHHHHHHHhccCCCeEEEEEECCCCchHHHHHHHhC---C-------CeEEEecCCC---------cCh
Confidence 356666657888889998776 345777777655555555554432 1 1334332222 378
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
+.++..+....+ .+-++++..|.....+ +..+++.....
T Consensus 63 ~~a~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 102 (166)
T cd04186 63 GAGNNQGIREAK------GDYVLLLNPDTVVEPGALLELLDAAEQD 102 (166)
T ss_pred HHHhhHHHhhCC------CCEEEEECCCcEECccHHHHHHHHHHhC
Confidence 888888887774 4889999999987776 56666655444
No 269
>COG1920 Predicted nucleotidyltransferase, CobY/MobA/RfbA family [General function prediction only]
Probab=87.85 E-value=4.9 Score=34.79 Aligned_cols=106 Identities=15% Similarity=0.123 Sum_probs=61.9
Q ss_pred eeEEEEcC---CCCccCCcccc-cCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcc
Q 014564 9 VAAVILGG---GAGTRLYPLTK-QRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVT 84 (422)
Q Consensus 9 ~~aVILAa---G~g~Rl~plt~-~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~ 84 (422)
|++||+-. +.=|||.|.-. +.-+-|+ +-|+..++..+... +.+|.|++.. +++..+.. .
T Consensus 1 mr~iIPvk~~~~aKTRLs~~lS~eeRe~~~-----laML~dvi~Al~~~-~~~i~Vvtpd--e~~~~~a~-------~-- 63 (210)
T COG1920 1 MRAIIPVKRLADAKTRLSPVLSAEERENFA-----LAMLVDVLGALAGV-LGEITVVTPD--EEVLVPAT-------K-- 63 (210)
T ss_pred CceEEeccccCcchhccccccCHHHHHHHH-----HHHHHHHHHHhhhh-cCCceEEcCC--hHhhhhcc-------c--
Confidence 45666643 45577765421 1112222 25777788888776 7899999852 22222211 0
Q ss_pred cCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe-e-eecChHHHHHHHH
Q 014564 85 FGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH-L-YRMDYMDFVQNHR 153 (422)
Q Consensus 85 ~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~-i-~~~~l~~ll~~~~ 153 (422)
.+++.. . +...++.++++.+.. .+.++|+.+|+ + ...+++.+++...
T Consensus 64 -----~~vl~d--~----------dLN~Ai~aa~~~~~~-----p~~v~vvmaDLPLl~~~~i~~~~~~~~ 112 (210)
T COG1920 64 -----LEVLAD--P----------DLNTAINAALDEIPL-----PSEVIVVMADLPLLSPEHIERALSAAK 112 (210)
T ss_pred -----ceeeec--c----------chHHHHHHHHhhCCC-----CcceEEEecccccCCHHHHHHHHHhcC
Confidence 123322 1 456788888877763 26799999999 4 4445777766543
No 270
>cd06434 GT2_HAS Hyaluronan synthases catalyze polymerization of hyaluronan. Hyaluronan synthases (HASs) are bi-functional glycosyltransferases that catalyze polymerization of hyaluronan. HASs transfer both GlcUA and GlcNAc in beta-(1,3) and beta-(1,4) linkages, respectively to the hyaluronan chain using UDP-GlcNAc and UDP-GlcUA as substrates. HA is made as a free glycan, not attached to a protein or lipid. HASs do not need a primer for HA synthesis; they initiate HA biosynthesis de novo with only UDP-GlcNAc, UDP-GlcUA, and Mg2+. Hyaluronan (HA) is a linear heteropolysaccharide composed of (1-3)-linked beta-D-GlcUA-beta-D-GlcNAc disaccharide repeats. It can be found in vertebrates and a few microbes and is typically on the cell surface or in the extracellular space, but is also found inside mammalian cells. Hyaluronan has several physiochemical and biological functions such as space filling, lubrication, and providing a hydrated matrix through which cells can migrate.
Probab=87.15 E-value=6.8 Score=34.97 Aligned_cols=97 Identities=10% Similarity=0.173 Sum_probs=61.5
Q ss_pred ceeeCCcc-eeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 33 AVPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 33 Llpv~gk~-pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
++|..|.. ..|..+|+.+.+....+++||.....+.....+...... . .+.++.... .|-.
T Consensus 5 vIp~~ne~~~~l~~~l~sl~~q~~~eiivvdd~s~d~~~~~l~~~~~~---~-----~~~v~~~~~----------~g~~ 66 (235)
T cd06434 5 IIPVYDEDPDVFRECLRSILRQKPLEIIVVTDGDDEPYLSILSQTVKY---G-----GIFVITVPH----------PGKR 66 (235)
T ss_pred EEeecCCChHHHHHHHHHHHhCCCCEEEEEeCCCChHHHHHHHhhccC---C-----cEEEEecCC----------CChH
Confidence 35566664 577888888877656678777765555555554322111 0 133433222 2667
Q ss_pred HHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHH
Q 014564 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (422)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~ 153 (422)
.++..+....+ .+.++++.+|.....+ +..+++.+.
T Consensus 67 ~a~n~g~~~a~------~d~v~~lD~D~~~~~~~l~~l~~~~~ 103 (235)
T cd06434 67 RALAEGIRHVT------TDIVVLLDSDTVWPPNALPEMLKPFE 103 (235)
T ss_pred HHHHHHHHHhC------CCEEEEECCCceeChhHHHHHHHhcc
Confidence 77776666554 5899999999988877 677777765
No 271
>cd02525 Succinoglycan_BP_ExoA ExoA is involved in the biosynthesis of succinoglycan. Succinoglycan Biosynthesis Protein ExoA catalyzes the formation of a beta-1,3 linkage of the second sugar (glucose) of the succinoglycan with the galactose on the lipid carrie. Succinoglycan is an acidic exopolysaccharide that is important for invasion of the nodules. Succinoglycan is a high-molecular-weight polymer composed of repeating octasaccharide units. These units are synthesized on membrane-bound isoprenoid lipid carriers, beginning with galactose followed by seven glucose molecules, and modified by the addition of acetate, succinate, and pyruvate. ExoA is a membrane protein with a transmembrance domain at c-terminus.
Probab=86.28 E-value=6 Score=35.51 Aligned_cols=103 Identities=9% Similarity=0.156 Sum_probs=61.3
Q ss_pred eeeCCcceeehhhhhhhhhcCC----cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 34 VPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi----~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
+|..|..+.+..+|+.+.+... -+++|+-+...++..+.++... ... ..+.++.... .|
T Consensus 6 ip~~n~~~~l~~~l~sl~~q~~~~~~~evivvd~~s~d~~~~~~~~~~---~~~----~~v~~i~~~~----------~~ 68 (249)
T cd02525 6 IPVRNEEKYIEELLESLLNQSYPKDLIEIIVVDGGSTDGTREIVQEYA---AKD----PRIRLIDNPK----------RI 68 (249)
T ss_pred EEcCCchhhHHHHHHHHHhccCCCCccEEEEEeCCCCccHHHHHHHHH---hcC----CeEEEEeCCC----------CC
Confidence 4555554667778888876543 3677776655555555554321 110 0144443221 15
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcE
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~ 159 (422)
-+.++..+..... .+.++++.+|.....+ +..+++.+.+.+.++
T Consensus 69 ~~~a~N~g~~~a~------~d~v~~lD~D~~~~~~~l~~~~~~~~~~~~~~ 113 (249)
T cd02525 69 QSAGLNIGIRNSR------GDIIIRVDAHAVYPKDYILELVEALKRTGADN 113 (249)
T ss_pred chHHHHHHHHHhC------CCEEEEECCCccCCHHHHHHHHHHHhcCCCCE
Confidence 5667776666554 4889999999977666 677887665554444
No 272
>cd04179 DPM_DPG-synthase_like DPM_DPG-synthase_like is a member of the Glycosyltransferase 2 superfamily. DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi, and animals, have no transmembrane region, suggesting the ex
Probab=83.36 E-value=7.9 Score=32.90 Aligned_cols=106 Identities=13% Similarity=0.090 Sum_probs=62.1
Q ss_pred eeeCCcceeehhhhhhhhhc----CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 34 VPIGGAYRLIDVPMSNCINS----GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~----gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
+|..+....+..+|+.+.+. ...+|+|+-+...+...+.+++.. . ++. .+.++..... .|
T Consensus 3 i~~~n~~~~l~~~l~sl~~~~~~~~~~eiivvd~~s~d~~~~~~~~~~---~--~~~--~~~~~~~~~n---------~G 66 (185)
T cd04179 3 IPAYNEEENIPELVERLLAVLEEGYDYEIIVVDDGSTDGTAEIARELA---A--RVP--RVRVIRLSRN---------FG 66 (185)
T ss_pred ecccChHhhHHHHHHHHHHHhccCCCEEEEEEcCCCCCChHHHHHHHH---H--hCC--CeEEEEccCC---------CC
Confidence 45555534566777777766 356777776544444444443311 0 110 0234433333 37
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEE
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
-+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+
T Consensus 67 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 113 (185)
T cd04179 67 KGAAVRAGFKAAR------GDIVVTMDADLQHPPEDIPKLLEKLLEGGADVVI 113 (185)
T ss_pred ccHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEE
Confidence 7788877777665 4889999999876665 77788875665655533
No 273
>cd06423 CESA_like CESA_like is the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis protein catalyzes the
Probab=81.88 E-value=14 Score=30.48 Aligned_cols=102 Identities=15% Similarity=0.069 Sum_probs=59.5
Q ss_pred ceeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
.+|.-|+...|..+|+.+.+.. .-+++|+-+...+...+.+.+.. ... . ..+.++..... .|.
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~iivvdd~s~d~t~~~~~~~~--~~~---~-~~~~~~~~~~~---------~g~ 66 (180)
T cd06423 2 IVPAYNEEAVIERTIESLLALDYPKLEVIVVDDGSTDDTLEILEELA--ALY---I-RRVLVVRDKEN---------GGK 66 (180)
T ss_pred eecccChHHHHHHHHHHHHhCCCCceEEEEEeCCCccchHHHHHHHh--ccc---c-ceEEEEEeccc---------CCc
Confidence 3566665457777888887763 45677776544444444443321 000 0 01222222222 378
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
+.++..+..... .+.++++.+|.+...+ +..++..+.+.
T Consensus 67 ~~~~n~~~~~~~------~~~i~~~D~D~~~~~~~l~~~~~~~~~~ 106 (180)
T cd06423 67 AGALNAGLRHAK------GDIVVVLDADTILEPDALKRLVVPFFAD 106 (180)
T ss_pred hHHHHHHHHhcC------CCEEEEECCCCCcChHHHHHHHHHhccC
Confidence 888888877764 4889999999977766 56664555443
No 274
>PLN02726 dolichyl-phosphate beta-D-mannosyltransferase
Probab=80.06 E-value=16 Score=33.06 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=34.7
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEE
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
|-+.++..+..... .+.++++.+|...+.+ +..+++...+.+.++..
T Consensus 80 G~~~a~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~v~ 127 (243)
T PLN02726 80 GLGTAYIHGLKHAS------GDFVVIMDADLSHHPKYLPSFIKKQRETGADIVT 127 (243)
T ss_pred CHHHHHHHHHHHcC------CCEEEEEcCCCCCCHHHHHHHHHHHHhcCCcEEE
Confidence 77788877776654 4889999999977665 67788776666666644
No 275
>cd06427 CESA_like_2 CESA_like_2 is a member of the cellulose synthase superfamily. The cellulose synthase (CESA) superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members include cellulose synthase catalytic subunit, chitin synthase, Glucan Biosynthesis protein and other families of CESA-like proteins. Cellulose synthase catalyzes the polymerization reaction of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues in plants, most algae, some bacteria and fungi, and even some animals. In bacteria, algae and lower eukaryotes, there is a second unrelated type of cellulose synthase (Type II), which produces acylated cellulose, a derivative of cellulose. Chitin synthase catalyzes the incorporation of GlcNAc from substrate UDP-GlcNAc into chitin, which is a linear homopolymer of beta-(1,4)-linked GlcNAc residues and Glucan Biosynthesis prot
Probab=78.99 E-value=24 Score=31.79 Aligned_cols=108 Identities=13% Similarity=0.046 Sum_probs=60.1
Q ss_pred eeeCCcceeehhhhhhhhhcCC----cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 34 VPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi----~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
+|..|..-.|..+|+.+.+..- -+|+||.....+...+.+++. ...... .+.++..... .|
T Consensus 7 Ip~~Ne~~~l~~~l~sl~~~~y~~~~~eiivVdd~s~d~t~~i~~~~---~~~~~~---~i~~~~~~~~---------~G 71 (241)
T cd06427 7 VPLYKEAEVLPQLIASLSALDYPRSKLDVKLLLEEDDEETIAAARAL---RLPSIF---RVVVVPPSQP---------RT 71 (241)
T ss_pred EecCCcHHHHHHHHHHHHhCcCCcccEEEEEEECCCCchHHHHHHHh---ccCCCe---eEEEecCCCC---------Cc
Confidence 4554443455666777765422 256666554444444444331 110000 1222222111 36
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEEE
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
-+.++..+..... .+.++++.+|.....+ +..+++.+.+.+.++.++
T Consensus 72 ~~~a~n~g~~~a~------gd~i~~~DaD~~~~~~~l~~~~~~~~~~~~~v~~~ 119 (241)
T cd06427 72 KPKACNYALAFAR------GEYVVIYDAEDAPDPDQLKKAVAAFARLDDKLACV 119 (241)
T ss_pred hHHHHHHHHHhcC------CCEEEEEcCCCCCChHHHHHHHHHHHhcCCCEEEE
Confidence 7788888877654 4899999999988777 678888776544454443
No 276
>cd02510 pp-GalNAc-T pp-GalNAc-T initiates the formation of mucin-type O-linked glycans. UDP-GalNAc: polypeptide alpha-N-acetylgalactosaminyltransferases (pp-GalNAc-T) initiate the formation of mucin-type, O-linked glycans by catalyzing the transfer of alpha-N-acetylgalactosamine (GalNAc) from UDP-GalNAc to hydroxyl groups of Ser or Thr residues of core proteins to form the Tn antigen (GalNAc-a-1-O-Ser/Thr). These enzymes are type II membrane proteins with a GT-A type catalytic domain and a lectin domain located on the lumen side of the Golgi apparatus. In human, there are 15 isozymes of pp-GalNAc-Ts, representing the largest of all glycosyltransferase families. Each isozyme has unique but partially redundant substrate specificity for glycosylation sites on acceptor proteins.
Probab=76.53 E-value=25 Score=32.88 Aligned_cols=104 Identities=11% Similarity=0.120 Sum_probs=61.2
Q ss_pred eeeCCcc-eeehhhhhhhhhcC----CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCccccc
Q 014564 34 VPIGGAY-RLIDVPMSNCINSG----INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (422)
Q Consensus 34 lpv~gk~-pli~~~l~~l~~~g----i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (422)
+|.-|.. ..|..+|+.+.+.. ..+|+||-+...+.....+.+.. ... . ...+.++..+.. .
T Consensus 4 Ip~~N~~~~~l~~~l~Sl~~~~~~~~~~EIIvVDd~S~d~t~~~~~~~~-~~~---~-~~~v~vi~~~~n---------~ 69 (299)
T cd02510 4 IIFHNEALSTLLRTVHSVINRTPPELLKEIILVDDFSDKPELKLLLEEY-YKK---Y-LPKVKVLRLKKR---------E 69 (299)
T ss_pred EEEecCcHHHHHHHHHHHHhcCchhcCCEEEEEECCCCchHHHHHHHHH-Hhh---c-CCcEEEEEcCCC---------C
Confidence 5666663 47777888877642 13777776544433333332210 000 0 001555543333 3
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCC
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGA 157 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~ 157 (422)
|-+.+.-.+..... .+.++++++|.....+ +..+++...+...
T Consensus 70 G~~~a~N~g~~~A~------gd~i~fLD~D~~~~~~wL~~ll~~l~~~~~ 113 (299)
T cd02510 70 GLIRARIAGARAAT------GDVLVFLDSHCEVNVGWLEPLLARIAENRK 113 (299)
T ss_pred CHHHHHHHHHHHcc------CCEEEEEeCCcccCccHHHHHHHHHHhCCC
Confidence 77777777766654 5899999999977666 7888888766543
No 277
>cd04188 DPG_synthase DPG_synthase is involved in protein N-linked glycosylation. UDP-glucose:dolichyl-phosphate glucosyltransferase (DPG_synthase) is a transmembrane-bound enzyme of the endoplasmic reticulum involved in protein N-linked glycosylation. This enzyme catalyzes the transfer of glucose from UDP-glucose to dolichyl phosphate.
Probab=76.42 E-value=23 Score=30.99 Aligned_cols=49 Identities=22% Similarity=0.249 Sum_probs=36.4
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEEE
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITIS 162 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl~ 162 (422)
.|.+.++..+..... .+.++++.+|.....+ +..+++...+.+.++.+.
T Consensus 68 ~G~~~a~~~g~~~a~------gd~i~~ld~D~~~~~~~l~~l~~~~~~~~~~~v~g 117 (211)
T cd04188 68 RGKGGAVRAGMLAAR------GDYILFADADLATPFEELEKLEEALKTSGYDIAIG 117 (211)
T ss_pred CCcHHHHHHHHHHhc------CCEEEEEeCCCCCCHHHHHHHHHHHhccCCcEEEE
Confidence 388889988887775 4899999999977666 677777755555565443
No 278
>cd06442 DPM1_like DPM1_like represents putative enzymes similar to eukaryotic DPM1. Proteins similar to eukaryotic DPM1, including enzymes from bacteria and archaea; DPM1 is the catalytic subunit of eukaryotic dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. In higher eukaryotes,the enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. In lower eukaryotes, such as Saccharomyces cerevisiae and Trypanosoma brucei, DPM synthase consists of a single component (Dpm1p and TbDpm1, respectively) that possesses one predicted transmembrane region near the C terminus for anchoring to the ER membrane. In contrast, the Dpm1 homologues of higher eukaryotes, namely fission yeast, fungi,
Probab=76.42 E-value=19 Score=31.61 Aligned_cols=105 Identities=9% Similarity=0.082 Sum_probs=60.3
Q ss_pred ceeeCCcceeehhhhhhhhhcC---CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG---INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g---i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
.+|..|....|..+|+.+.+.- .-+|+||-+...+...+.+++.. .. .. .+.++..... .|
T Consensus 2 iIp~yn~~~~l~~~l~sl~~q~~~~~~eiiiVDd~S~d~t~~~~~~~~---~~--~~--~i~~~~~~~n---------~G 65 (224)
T cd06442 2 IIPTYNERENIPELIERLDAALKGIDYEIIVVDDNSPDGTAEIVRELA---KE--YP--RVRLIVRPGK---------RG 65 (224)
T ss_pred eEeccchhhhHHHHHHHHHHhhcCCCeEEEEEeCCCCCChHHHHHHHH---Hh--CC--ceEEEecCCC---------CC
Confidence 3566666455677777776642 35666665433333333332210 00 00 1334332222 37
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcE
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~ 159 (422)
.+.++..+..... .+.++++.+|.....+ +..+++.....+.++
T Consensus 66 ~~~a~n~g~~~a~------gd~i~~lD~D~~~~~~~l~~l~~~~~~~~~~~ 110 (224)
T cd06442 66 LGSAYIEGFKAAR------GDVIVVMDADLSHPPEYIPELLEAQLEGGADL 110 (224)
T ss_pred hHHHHHHHHHHcC------CCEEEEEECCCCCCHHHHHHHHHHHhcCCCCE
Confidence 8888888777665 4788999999876665 677777755555554
No 279
>cd06439 CESA_like_1 CESA_like_1 is a member of the cellulose synthase (CESA) superfamily. This is a subfamily of cellulose synthase (CESA) superfamily. CESA superfamily includes a wide variety of glycosyltransferase family 2 enzymes that share the common characteristic of catalyzing the elongation of polysaccharide chains. The members of the superfamily include cellulose synthase catalytic subunit, chitin synthase, glucan biosynthesis protein and other families of CESA-like proteins.
Probab=74.87 E-value=39 Score=30.34 Aligned_cols=104 Identities=13% Similarity=0.117 Sum_probs=63.9
Q ss_pred cccCcC--cceeeCCcceeehhhhhhhhhcCC----cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCC
Q 014564 26 TKQRAK--PAVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTP 99 (422)
Q Consensus 26 t~~~pK--~Llpv~gk~pli~~~l~~l~~~gi----~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~ 99 (422)
....|+ -++|..|....|...|+.+.+... -+++|+.....+...+.+.+. ... .+.++.....
T Consensus 25 ~~~~~~isVvip~~n~~~~l~~~l~si~~q~~~~~~~eiivvdd~s~d~t~~~~~~~---~~~------~v~~i~~~~~- 94 (251)
T cd06439 25 PAYLPTVTIIIPAYNEEAVIEAKLENLLALDYPRDRLEIIVVSDGSTDGTAEIAREY---ADK------GVKLLRFPER- 94 (251)
T ss_pred CCCCCEEEEEEecCCcHHHHHHHHHHHHhCcCCCCcEEEEEEECCCCccHHHHHHHH---hhC------cEEEEEcCCC-
Confidence 344554 566777764567777777766432 267777665555555545432 111 1334332222
Q ss_pred CcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHH
Q 014564 100 GEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (422)
Q Consensus 100 ~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~ 153 (422)
.|-+.++..+..... .+-++++.+|.+...+ +..+++...
T Consensus 95 --------~g~~~a~n~gi~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~ 135 (251)
T cd06439 95 --------RGKAAALNRALALAT------GEIVVFTDANALLDPDALRLLVRHFA 135 (251)
T ss_pred --------CChHHHHHHHHHHcC------CCEEEEEccccCcCHHHHHHHHHHhc
Confidence 377788888777665 4899999999987766 677777764
No 280
>KOG2388 consensus UDP-N-acetylglucosamine pyrophosphorylase [Cell wall/membrane/envelope biogenesis]
Probab=74.49 E-value=2.7 Score=41.56 Aligned_cols=72 Identities=29% Similarity=0.407 Sum_probs=48.2
Q ss_pred cceeEEEEcCCCCccCCcccccCcCcceeeC---Ccceeehhhhhhhhhc----------C-CcEEEEEeecCh-HHHHH
Q 014564 7 RTVAAVILGGGAGTRLYPLTKQRAKPAVPIG---GAYRLIDVPMSNCINS----------G-INKVYILTQYNS-ASLNR 71 (422)
Q Consensus 7 ~~~~aVILAaG~g~Rl~plt~~~pK~Llpv~---gk~pli~~~l~~l~~~----------g-i~~i~Iv~~~~~-~~i~~ 71 (422)
.+..++++|||.|+|++ ...||.+.|++ |+ .++++..+.+... | --..+|.|+... +...+
T Consensus 96 ~~~a~~llaGgqgtRLg---~~~pkg~~~~G~~~~~-slf~~qae~il~lq~~a~~~~~~~~~I~w~ImtS~~T~e~T~~ 171 (477)
T KOG2388|consen 96 GKVAVVLLAGGQGTRLG---SSGPKGCYPIGLPSGK-SLFQIQAERILKLQELASMAVSDGVDIPWYIMTSAFTHEATLE 171 (477)
T ss_pred CcceEEEeccCceeeec---cCCCcceeecCCcccc-chhhhhHHHHHHHHHHHhhhhccCCceEEEEecCCCccHHhHh
Confidence 45789999999999997 67999999998 44 5888777765441 2 123344455443 55667
Q ss_pred HHHhhccCCCC
Q 014564 72 HLARAYNYGSG 82 (422)
Q Consensus 72 ~l~~~~~~~~~ 82 (422)
+++.+..|+..
T Consensus 172 ~f~~~~~FGl~ 182 (477)
T KOG2388|consen 172 YFESHKYFGLK 182 (477)
T ss_pred HHhhcCCCCCC
Confidence 77654335433
No 281
>PRK10073 putative glycosyl transferase; Provisional
Probab=74.32 E-value=30 Score=33.13 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=58.8
Q ss_pred eeeCCcceeehhhhhhhhhcCC--cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 34 VPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi--~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
+|+.|....|..+|+.+..... -+|+||-....+...+.+.+.. .... .+.++... . .|.+
T Consensus 12 IP~yN~~~~L~~~l~Sl~~Qt~~~~EIIiVdDgStD~t~~i~~~~~--~~~~-----~i~vi~~~-n---------~G~~ 74 (328)
T PRK10073 12 IPLYNAGKDFRAFMESLIAQTWTALEIIIVNDGSTDNSVEIAKHYA--ENYP-----HVRLLHQA-N---------AGVS 74 (328)
T ss_pred EeccCCHHHHHHHHHHHHhCCCCCeEEEEEeCCCCccHHHHHHHHH--hhCC-----CEEEEECC-C---------CChH
Confidence 3444443566777777766533 3565554333322222222211 0000 14444322 2 2777
Q ss_pred HHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEE
Q 014564 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
.|.-.+..... .+.++++.+|....++ +..+++...+.+.++.+
T Consensus 75 ~arN~gl~~a~------g~yi~flD~DD~~~p~~l~~l~~~~~~~~~dvv~ 119 (328)
T PRK10073 75 VARNTGLAVAT------GKYVAFPDADDVVYPTMYETLMTMALEDDLDVAQ 119 (328)
T ss_pred HHHHHHHHhCC------CCEEEEECCCCccChhHHHHHHHHHHhCCCCEEE
Confidence 77777776665 4899999999987777 67777776666666543
No 282
>cd06433 GT_2_WfgS_like WfgS and WfeV are involved in O-antigen biosynthesis. Escherichia coli WfgS and Shigella dysenteriae WfeV are glycosyltransferase 2 family enzymes involved in O-antigen biosynthesis. GT-2 enzymes have GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=73.48 E-value=34 Score=29.13 Aligned_cols=97 Identities=8% Similarity=0.050 Sum_probs=57.1
Q ss_pred eeeCCcceeehhhhhhhhhcCCc--EEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi~--~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
+|.-|....+..+|+.+.+.... +|+|+-+...+...+.+++.. .. .+.+... .. .|.+
T Consensus 4 i~~~n~~~~l~~~l~sl~~q~~~~~evivvDd~s~d~~~~~~~~~~---~~------~~~~~~~-~~---------~g~~ 64 (202)
T cd06433 4 TPTYNQAETLEETIDSVLSQTYPNIEYIVIDGGSTDGTVDIIKKYE---DK------ITYWISE-PD---------KGIY 64 (202)
T ss_pred EeccchHHHHHHHHHHHHhCCCCCceEEEEeCCCCccHHHHHHHhH---hh------cEEEEec-CC---------cCHH
Confidence 45555535677888888765444 566664433344445454321 11 1223322 11 3778
Q ss_pred HHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
.++..+..... .+.++++.+|.....+ +..+++...+.
T Consensus 65 ~a~n~~~~~a~------~~~v~~ld~D~~~~~~~~~~~~~~~~~~ 103 (202)
T cd06433 65 DAMNKGIALAT------GDIIGFLNSDDTLLPGALLAVVAAFAEH 103 (202)
T ss_pred HHHHHHHHHcC------CCEEEEeCCCcccCchHHHHHHHHHHhC
Confidence 88888877665 4889999999977665 67777444443
No 283
>cd04195 GT2_AmsE_like GT2_AmsE_like is involved in exopolysaccharide amylovora biosynthesis. AmsE is a glycosyltransferase involved in exopolysaccharide amylovora biosynthesis in Erwinia amylovora. Amylovara is one of the three exopolysaccharide produced by E. amylovora. Amylovara-deficient mutants are non-pathogenic. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=73.26 E-value=49 Score=28.40 Aligned_cols=99 Identities=11% Similarity=0.103 Sum_probs=58.5
Q ss_pred ceeeCCcc--eeehhhhhhhhhcC--CcEEEEEeecC-hHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccc
Q 014564 33 AVPIGGAY--RLIDVPMSNCINSG--INKVYILTQYN-SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (422)
Q Consensus 33 Llpv~gk~--pli~~~l~~l~~~g--i~~i~Iv~~~~-~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (422)
++|+.|.. ..|..+|+.+.+.. ..+++||-... .+...+.+.+.. . +.. +.++.....
T Consensus 3 iip~~n~~~~~~l~~~l~Sl~~q~~~~~eiiivdd~ss~d~t~~~~~~~~---~--~~~---i~~i~~~~n--------- 65 (201)
T cd04195 3 LMSVYIKEKPEFLREALESILKQTLPPDEVVLVKDGPVTQSLNEVLEEFK---R--KLP---LKVVPLEKN--------- 65 (201)
T ss_pred EEEccccchHHHHHHHHHHHHhcCCCCcEEEEEECCCCchhHHHHHHHHH---h--cCC---eEEEEcCcc---------
Confidence 46777651 27888888887753 35666665433 333433333211 0 011 333332222
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
.|.+.+...+....+ .+.++++.+|.+...+ +..+++...+
T Consensus 66 ~G~~~a~N~g~~~a~------gd~i~~lD~Dd~~~~~~l~~~~~~~~~ 107 (201)
T cd04195 66 RGLGKALNEGLKHCT------YDWVARMDTDDISLPDRFEKQLDFIEK 107 (201)
T ss_pred ccHHHHHHHHHHhcC------CCEEEEeCCccccCcHHHHHHHHHHHh
Confidence 377888877776554 4889999999977766 6777776654
No 284
>PRK11204 N-glycosyltransferase; Provisional
Probab=68.89 E-value=42 Score=33.17 Aligned_cols=102 Identities=18% Similarity=0.154 Sum_probs=61.3
Q ss_pred ceeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
++|..|....+..+++.+.+.. --+++|+-....+...+.+++.. . +.. .+.++...+. .|-
T Consensus 59 iIp~yne~~~i~~~l~sl~~q~yp~~eiiVvdD~s~d~t~~~l~~~~---~--~~~--~v~~i~~~~n---------~Gk 122 (420)
T PRK11204 59 LVPCYNEGENVEETISHLLALRYPNYEVIAINDGSSDNTGEILDRLA---A--QIP--RLRVIHLAEN---------QGK 122 (420)
T ss_pred EEecCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCccHHHHHHHHH---H--hCC--cEEEEEcCCC---------CCH
Confidence 5666666467788888877653 23666665544443333333211 0 000 1444432222 377
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcC
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~ 156 (422)
+.++..+....+ .+.++++.+|.+.+.+ +..+++.+.+..
T Consensus 123 a~aln~g~~~a~------~d~i~~lDaD~~~~~d~L~~l~~~~~~~~ 163 (420)
T PRK11204 123 ANALNTGAAAAR------SEYLVCIDGDALLDPDAAAYMVEHFLHNP 163 (420)
T ss_pred HHHHHHHHHHcC------CCEEEEECCCCCCChhHHHHHHHHHHhCC
Confidence 888888877654 4899999999988777 677877775433
No 285
>PRK14583 hmsR N-glycosyltransferase; Provisional
Probab=67.43 E-value=42 Score=33.61 Aligned_cols=102 Identities=16% Similarity=0.043 Sum_probs=60.7
Q ss_pred cceeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 32 PAVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 32 ~Llpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
-++|..|....+..+++.+.+.. --+|+|+-+...+...+.+.+.. . +.. .+.++..... .|
T Consensus 79 ViIP~yNE~~~i~~~l~sll~q~yp~~eIivVdDgs~D~t~~~~~~~~--~---~~~--~v~vv~~~~n---------~G 142 (444)
T PRK14583 79 ILVPCFNEGLNARETIHAALAQTYTNIEVIAINDGSSDDTAQVLDALL--A---EDP--RLRVIHLAHN---------QG 142 (444)
T ss_pred EEEEeCCCHHHHHHHHHHHHcCCCCCeEEEEEECCCCccHHHHHHHHH--H---hCC--CEEEEEeCCC---------CC
Confidence 56788777556777888876642 23676665544433333332211 0 000 1444432222 36
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
-+.++..+....+ .+.++++.+|.+.+.+ +..+++.+.+.
T Consensus 143 ka~AlN~gl~~a~------~d~iv~lDAD~~~~~d~L~~lv~~~~~~ 183 (444)
T PRK14583 143 KAIALRMGAAAAR------SEYLVCIDGDALLDKNAVPYLVAPLIAN 183 (444)
T ss_pred HHHHHHHHHHhCC------CCEEEEECCCCCcCHHHHHHHHHHHHhC
Confidence 7788887776554 5899999999988877 67777766543
No 286
>cd06438 EpsO_like EpsO protein participates in the methanolan synthesis. The Methylobacillus sp EpsO protein is predicted to participate in the methanolan synthesis. Methanolan is an exopolysaccharide (EPS), composed of glucose, mannose and galactose. A 21 genes cluster was predicted to participate in the methanolan synthesis. Gene disruption analysis revealed that EpsO is one of the glycosyltransferase enzymes involved in the synthesis of repeating sugar units onto the lipid carrier.
Probab=66.85 E-value=79 Score=26.81 Aligned_cols=102 Identities=11% Similarity=0.131 Sum_probs=58.2
Q ss_pred ceeeCCcceeehhhhhhhhhcCC----cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCccccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi----~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (422)
++|..|....|..+|+.+.+... -+|+|+.....+...+.+.+. .. . +........ .
T Consensus 2 vIp~~ne~~~i~~~l~sl~~~~~p~~~~eiivvdd~s~D~t~~~~~~~---~~--~-----~~~~~~~~~---------~ 62 (183)
T cd06438 2 LIPAHNEEAVIGNTVRSLKAQDYPRELYRIFVVADNCTDDTAQVARAA---GA--T-----VLERHDPER---------R 62 (183)
T ss_pred EEeccchHHHHHHHHHHHHhcCCCCcccEEEEEeCCCCchHHHHHHHc---CC--e-----EEEeCCCCC---------C
Confidence 46666654567777888766432 356666655445444444321 11 0 111111111 3
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
|.+.++..+...+... ....+-++++.+|....++ +..+++.+.+
T Consensus 63 gk~~aln~g~~~a~~~-~~~~d~v~~~DaD~~~~p~~l~~l~~~~~~ 108 (183)
T cd06438 63 GKGYALDFGFRHLLNL-ADDPDAVVVFDADNLVDPNALEELNARFAA 108 (183)
T ss_pred CHHHHHHHHHHHHHhc-CCCCCEEEEEcCCCCCChhHHHHHHHHHhh
Confidence 7778888777665300 0114789999999988877 5777776654
No 287
>cd04187 DPM1_like_bac Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.
Probab=66.37 E-value=61 Score=27.31 Aligned_cols=47 Identities=13% Similarity=0.071 Sum_probs=33.4
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEE
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
.|.+.++..+..... .+.++++.+|.....+ +..+++. .+.+.++.+
T Consensus 66 ~G~~~a~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~-~~~~~~~v~ 113 (181)
T cd04187 66 FGQQAALLAGLDHAR------GDAVITMDADLQDPPELIPEMLAK-WEEGYDVVY 113 (181)
T ss_pred CCcHHHHHHHHHhcC------CCEEEEEeCCCCCCHHHHHHHHHH-HhCCCcEEE
Confidence 378888888877665 4889999999977665 6777776 444555433
No 288
>cd06421 CESA_CelA_like CESA_CelA_like are involved in the elongation of the glucan chain of cellulose. Family of proteins related to Agrobacterium tumefaciens CelA and Gluconacetobacter xylinus BscA. These proteins are involved in the elongation of the glucan chain of cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues. They are putative catalytic subunit of cellulose synthase, which is a glycosyltransferase using UDP-glucose as the substrate. The catalytic subunit is an integral membrane protein with 6 transmembrane segments and it is postulated that the protein is anchored in the membrane at the N-terminal end.
Probab=66.16 E-value=68 Score=28.21 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=57.6
Q ss_pred ceeeCCcc-eeehhhhhhhhhcCCc----EEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccc
Q 014564 33 AVPIGGAY-RLIDVPMSNCINSGIN----KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (422)
Q Consensus 33 Llpv~gk~-pli~~~l~~l~~~gi~----~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (422)
.+|..|.. .++...|+.+.+.... +++|+-+...+...+.+.+.. .. + .+.++......
T Consensus 6 iip~~n~~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~---~~--~---~~~~~~~~~~~-------- 69 (234)
T cd06421 6 FIPTYNEPLEIVRKTLRAALAIDYPHDKLRVYVLDDGRRPELRALAAELG---VE--Y---GYRYLTRPDNR-------- 69 (234)
T ss_pred EEecCCCcHHHHHHHHHHHHhcCCCcccEEEEEEcCCCchhHHHHHHHhh---cc--c---CceEEEeCCCC--------
Confidence 35555641 3577788888775432 677776655556655554421 11 1 12233222221
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
.+-+.++..+.+... .+.++++.+|.+.+.+ +..+++...+
T Consensus 70 ~~~~~~~n~~~~~a~------~d~i~~lD~D~~~~~~~l~~l~~~~~~ 111 (234)
T cd06421 70 HAKAGNLNNALAHTT------GDFVAILDADHVPTPDFLRRTLGYFLD 111 (234)
T ss_pred CCcHHHHHHHHHhCC------CCEEEEEccccCcCccHHHHHHHHHhc
Confidence 134555666665544 4899999999988877 6777776654
No 289
>cd04184 GT2_RfbC_Mx_like Myxococcus xanthus RfbC like proteins are required for O-antigen biosynthesis. The rfbC gene encodes a predicted protein of 1,276 amino acids, which is required for O-antigen biosynthesis in Myxococcus xanthus. It is a subfamily of Glycosyltransferase Family GT2, which includes diverse families of glycosyl transferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds.
Probab=66.07 E-value=51 Score=28.27 Aligned_cols=39 Identities=21% Similarity=0.095 Sum_probs=29.7
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHH
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~ 153 (422)
|.+.++-.+..... .+.++++.+|.....+ +..+++.+.
T Consensus 70 g~~~a~n~g~~~a~------~d~i~~ld~D~~~~~~~l~~~~~~~~ 109 (202)
T cd04184 70 GISAATNSALELAT------GEFVALLDHDDELAPHALYEVVKALN 109 (202)
T ss_pred CHHHHHHHHHHhhc------CCEEEEECCCCcCChHHHHHHHHHHH
Confidence 77788877776654 4888999999977776 677887763
No 290
>cd06420 GT2_Chondriotin_Pol_N N-terminal domain of Chondroitin polymerase functions as a GalNAc transferase. Chondroitin polymerase is a two domain, bi-functional protein. The N-terminal domain functions as a GalNAc transferase. The bacterial chondroitin polymerase catalyzes elongation of the chondroitin chain by alternatively transferring the GlcUA and GalNAc moiety from UDP-GlcUA and UDP-GalNAc to the non-reducing ends of the chondroitin chain. The enzyme consists of N-terminal and C-terminal domains in which the two active sites catalyze the addition of GalNAc and GlcUA, respectively. Chondroitin chains range from 40 to over 100 repeating units of the disaccharide. Sulfated chondroitins are involved in the regulation of various biological functions such as central nervous system development, wound repair, infection, growth factor signaling, and morphogenesis, in addition to its conventional structural roles. In Caenorhabditis elegans, chondroitin is an essential factor for the worm
Probab=65.06 E-value=50 Score=27.73 Aligned_cols=99 Identities=11% Similarity=0.055 Sum_probs=54.6
Q ss_pred eeeCCcceeehhhhhhhhhc--CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 34 VPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~--gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
+|..|+...+..+|+.+.+. ..-+++|+-....+...+.+++.. . ..+...+.+...... .|.+
T Consensus 3 ip~~n~~~~l~~~l~sl~~q~~~~~eiivvdd~s~d~t~~~~~~~~---~--~~~~~~~~~~~~~~~---------~~~~ 68 (182)
T cd06420 3 ITTYNRPEALELVLKSVLNQSILPFEVIIADDGSTEETKELIEEFK---S--QFPIPIKHVWQEDEG---------FRKA 68 (182)
T ss_pred EeecCChHHHHHHHHHHHhccCCCCEEEEEeCCCchhHHHHHHHHH---h--hcCCceEEEEcCCcc---------hhHH
Confidence 56666545678888888764 234676665544444444443321 0 011111223222111 2455
Q ss_pred HHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHH
Q 014564 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (422)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~ 152 (422)
.+...+.+... .+.++++.+|.+...+ +..+++.+
T Consensus 69 ~~~n~g~~~a~------g~~i~~lD~D~~~~~~~l~~~~~~~ 104 (182)
T cd06420 69 KIRNKAIAAAK------GDYLIFIDGDCIPHPDFIADHIELA 104 (182)
T ss_pred HHHHHHHHHhc------CCEEEEEcCCcccCHHHHHHHHHHh
Confidence 55655555544 4899999999977766 56666655
No 291
>cd04196 GT_2_like_d Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=62.73 E-value=78 Score=27.25 Aligned_cols=101 Identities=6% Similarity=0.047 Sum_probs=56.3
Q ss_pred ceeeCCcceeehhhhhhhhhcCC--cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi--~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
++|.-|....|..+|+.+.+... -+++|+-....+...+.+++.. . +++. .+.++..... .|.
T Consensus 3 vIp~yn~~~~l~~~l~sl~~q~~~~~eiiVvddgS~d~t~~~~~~~~---~--~~~~-~~~~~~~~~~---------~G~ 67 (214)
T cd04196 3 LMATYNGEKYLREQLDSILAQTYKNDELIISDDGSTDGTVEIIKEYI---D--KDPF-IIILIRNGKN---------LGV 67 (214)
T ss_pred EEEecCcHHHHHHHHHHHHhCcCCCeEEEEEeCCCCCCcHHHHHHHH---h--cCCc-eEEEEeCCCC---------ccH
Confidence 46666664567788888776532 3566665433333333332211 0 0000 1333332222 377
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
+.++..+....+ .+.++++..|.+...+ +..+++...+
T Consensus 68 ~~~~n~g~~~~~------g~~v~~ld~Dd~~~~~~l~~~~~~~~~ 106 (214)
T cd04196 68 ARNFESLLQAAD------GDYVFFCDQDDIWLPDKLERLLKAFLK 106 (214)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCcccChhHHHHHHHHHhc
Confidence 777777655444 5889999999877766 7777776433
No 292
>PRK10714 undecaprenyl phosphate 4-deoxy-4-formamido-L-arabinose transferase; Provisional
Probab=61.75 E-value=88 Score=29.86 Aligned_cols=46 Identities=15% Similarity=0.113 Sum_probs=34.7
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEE
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADIT 160 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~t 160 (422)
.|.+.|+..+..... .+.++++.+|.-.+++ +.++++... ++.++.
T Consensus 76 ~G~~~A~~~G~~~A~------gd~vv~~DaD~q~~p~~i~~l~~~~~-~~~DvV 122 (325)
T PRK10714 76 YGQHSAIMAGFSHVT------GDLIITLDADLQNPPEEIPRLVAKAD-EGYDVV 122 (325)
T ss_pred CCHHHHHHHHHHhCC------CCEEEEECCCCCCCHHHHHHHHHHHH-hhCCEE
Confidence 378889988887765 4889999999977665 788888764 456654
No 293
>PF04519 Bactofilin: Polymer-forming cytoskeletal; InterPro: IPR007607 This family contains several uncharacterised hypothetical proteins.
Probab=61.26 E-value=24 Score=27.13 Aligned_cols=20 Identities=35% Similarity=0.406 Sum_probs=8.4
Q ss_pred eEeCCCcEEeeeEeCCCcEE
Q 014564 360 VGIGENTKIKECIIDKNARI 379 (422)
Q Consensus 360 ~~i~~~~~i~~~~i~~~~~i 379 (422)
..|+.++.+...+-++++.|
T Consensus 37 v~i~~~~~v~G~i~~~~~~i 56 (101)
T PF04519_consen 37 VKIGGNGEVKGDIKADDVII 56 (101)
T ss_pred EEEcCCCEEEEEEEEeEEEE
Confidence 44444444443333333333
No 294
>cd04192 GT_2_like_e Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=61.10 E-value=71 Score=27.90 Aligned_cols=106 Identities=8% Similarity=0.070 Sum_probs=58.8
Q ss_pred ceeeCCcceeehhhhhhhhhcCC----cEEEEEeecChHHHHHHHH-hhccCCCCcccCCCeEEEeccCCCCCcCCcccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI----NKVYILTQYNSASLNRHLA-RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi----~~i~Iv~~~~~~~i~~~l~-~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (422)
++|..|....|..+|+.+....- -+|+|+-+...+...+.+. ... . ... .+.++...... .
T Consensus 2 iip~~n~~~~l~~~l~sl~~q~~~~~~~eiivvdd~s~d~t~~~~~~~~~-~-~~~-----~v~~~~~~~~~-------~ 67 (229)
T cd04192 2 VIAARNEAENLPRLLQSLSALDYPKEKFEVILVDDHSTDGTVQILEFAAA-K-PNF-----QLKILNNSRVS-------I 67 (229)
T ss_pred EEEecCcHHHHHHHHHHHHhCCCCCCceEEEEEcCCCCcChHHHHHHHHh-C-CCc-----ceEEeeccCcc-------c
Confidence 46676664567788888766422 3566665443333333332 100 0 011 14444332210 1
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCc
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGAD 158 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~ 158 (422)
.|-+.++..+..... .+-++++.+|.+...+ +..+++.+.+....
T Consensus 68 ~g~~~a~n~g~~~~~------~d~i~~~D~D~~~~~~~l~~l~~~~~~~~~~ 113 (229)
T cd04192 68 SGKKNALTTAIKAAK------GDWIVTTDADCVVPSNWLLTFVAFIQKEQIG 113 (229)
T ss_pred chhHHHHHHHHHHhc------CCEEEEECCCcccCHHHHHHHHHHhhcCCCc
Confidence 366667766665544 4889999999987777 67777766554433
No 295
>PF01983 CofC: Guanylyl transferase CofC like; InterPro: IPR002835 Coenzyme F 420 is a hydride carrier cofactor functioning in methanogenesis. One step in the biosynthesis of coenzyme F 420 involves the coupling of 2-phospho- l-lactate (LP) to 7,8-didemethyl-8-hydroxy-5-deazaflavin, the F 420 chromophore. This condensation requires an initial activation of 2-phospho- l-lactate through a pyrophosphate linkage to GMP. MJ0887 from Methanocaldococcus jannaschii has domain similarity with other known nucleotidyl transferases and was demonstrated to catalyse the formation of lactyl-2-diphospho-5'-guanosine from LP and GTP, which is the third step in the biosynthesis of coenzyme F 420 []. ; GO: 0016779 nucleotidyltransferase activity; PDB: 2I5E_B.
Probab=59.86 E-value=4.7 Score=36.02 Aligned_cols=104 Identities=18% Similarity=0.202 Sum_probs=47.9
Q ss_pred eeEEEEcCCCC---ccCCcccccCcCcceeeCCc----ceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCC
Q 014564 9 VAAVILGGGAG---TRLYPLTKQRAKPAVPIGGA----YRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGS 81 (422)
Q Consensus 9 ~~aVILAaG~g---~Rl~plt~~~pK~Llpv~gk----~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~ 81 (422)
|++||+.-..+ |||.|. |+-..+ ..|+..++..+.. ++ +++|+.. +.+..+...
T Consensus 1 m~~VIPvK~~~~aKSRLs~~--------L~~~eR~~La~aMl~Dvl~al~~--v~-v~vVs~d--~~v~~~a~~------ 61 (217)
T PF01983_consen 1 MRAVIPVKPLARAKSRLSPV--------LSPEEREALALAMLRDVLAALRA--VD-VVVVSRD--PEVAALARA------ 61 (217)
T ss_dssp -EEEEE---TT-TTGGGTTT--------S-HHHHHHHHHHHHHHHHHHHHH---S-EEEEES----S-TTTTT-------
T ss_pred CeEEEEcCCCCccccccCcc--------CCHHHHHHHHHHHHHHHHHHHHh--cC-eEEeccc--hhhhhhhhh------
Confidence 67788775444 666432 221211 1678888988877 56 6666531 222221110
Q ss_pred CcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCe--eeecChHHHHHHH
Q 014564 82 GVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFEDPRNKVIEDVLILSGDH--LYRMDYMDFVQNH 152 (422)
Q Consensus 82 ~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~--i~~~~l~~ll~~~ 152 (422)
.++ ++++.... .|...||..+..... .+.++++++|+ +...++..+++..
T Consensus 62 --~~g---~~vl~d~~----------~gLN~Al~~a~~~~~------~~~vlvl~aDLPll~~~dl~~~l~~~ 113 (217)
T PF01983_consen 62 --RLG---AEVLPDPG----------RGLNAALNAALAAAG------DDPVLVLPADLPLLTPEDLDALLAAA 113 (217)
T ss_dssp ----S---SEEEE-------------S-HHHHHHHHHH-H--------S-EEEE-S--TT--HHHHHHHCT-S
T ss_pred --ccC---CeEecCCC----------CCHHHHHHHHHhccC------CCceEEeecCCccCCHHHHHHHHhcc
Confidence 112 45555431 278888888832222 48999999999 5566677777664
No 296
>TIGR03111 glyc2_xrt_Gpos1 putative glycosyltransferase TIGR03111. Members of this protein family probable glycosyltransferases of family 2, whose genes are near those for Gram-positive proteins (TIGR03110) related to the proposed exosortase (TIGR02602).
Probab=58.86 E-value=90 Score=31.22 Aligned_cols=102 Identities=13% Similarity=0.116 Sum_probs=59.2
Q ss_pred ceeeCCcceeehhhhhhhhhcCC--c--EEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCccccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI--N--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQ 108 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi--~--~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~ 108 (422)
++|.-|....|..+++.+.+... + +|+|+-+...+...+.+++...-... +.+...+.. .
T Consensus 54 IIP~yNe~~~l~~~l~sl~~q~yp~~~~eIiVVDd~StD~T~~il~~~~~~~~~-------v~v~~~~~~---------~ 117 (439)
T TIGR03111 54 IIPVYNSEDTLFNCIESIYNQTYPIELIDIILANNQSTDDSFQVFCRAQNEFPG-------LSLRYMNSD---------Q 117 (439)
T ss_pred EEEeCCChHHHHHHHHHHHhcCCCCCCeEEEEEECCCChhHHHHHHHHHHhCCC-------eEEEEeCCC---------C
Confidence 55666765677778888776532 2 46565544334433333221100001 222211122 3
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcC
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~ 156 (422)
|-+.|+-.+..... .+.++++.+|.+.+.+ +..+++.+.+..
T Consensus 118 Gka~AlN~gl~~s~------g~~v~~~DaD~~~~~d~L~~l~~~f~~~~ 160 (439)
T TIGR03111 118 GKAKALNAAIYNSI------GKYIIHIDSDGKLHKDAIKNMVTRFENNP 160 (439)
T ss_pred CHHHHHHHHHHHcc------CCEEEEECCCCCcChHHHHHHHHHHHhCC
Confidence 77888888877655 4889999999988777 688887776443
No 297
>cd02526 GT2_RfbF_like RfbF is a putative dTDP-rhamnosyl transferase. Shigella flexneri RfbF protein is a putative dTDP-rhamnosyl transferase. dTDP rhamnosyl transferases of Shigella flexneri add rhamnose sugars to N-acetyl-glucosamine in the O-antigen tetrasaccharide repeat. Lipopolysaccharide O antigens are important virulence determinants for many bacteria. The variations of sugar composition, the sequence of the sugars and the linkages in the O antigen provide structural diversity of the O antigen.
Probab=58.74 E-value=1.3e+02 Score=26.52 Aligned_cols=93 Identities=14% Similarity=0.125 Sum_probs=50.9
Q ss_pred eeeCCcc-eeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHH
Q 014564 34 VPIGGAY-RLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (422)
Q Consensus 34 lpv~gk~-pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~ 112 (422)
+|.-+.. ..|..+|+.+... ..+++|+=+...+...... +.. .. .+.++..... .|-+.
T Consensus 3 I~~yn~~~~~l~~~l~sl~~q-~~~iivvDn~s~~~~~~~~-~~~--~~-------~i~~i~~~~n---------~G~~~ 62 (237)
T cd02526 3 VVTYNPDLSKLKELLAALAEQ-VDKVVVVDNSSGNDIELRL-RLN--SE-------KIELIHLGEN---------LGIAK 62 (237)
T ss_pred EEEecCCHHHHHHHHHHHhcc-CCEEEEEeCCCCccHHHHh-hcc--CC-------cEEEEECCCc---------eehHH
Confidence 4444553 5677778887766 5566665443222222221 110 01 1444433322 36677
Q ss_pred HHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHH
Q 014564 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFV 149 (422)
Q Consensus 113 al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll 149 (422)
+...+....... ..+.++++.+|...+.+ +..++
T Consensus 63 a~N~g~~~a~~~---~~d~v~~lD~D~~~~~~~l~~l~ 97 (237)
T cd02526 63 ALNIGIKAALEN---GADYVLLFDQDSVPPPDMVEKLL 97 (237)
T ss_pred hhhHHHHHHHhC---CCCEEEEECCCCCcCHhHHHHHH
Confidence 776666655320 14899999999988776 56664
No 298
>cd02522 GT_2_like_a GT_2_like_a represents a glycosyltransferase family-2 subfamily with unknown function. Glycosyltransferase family 2 (GT-2) subfamily of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=58.59 E-value=92 Score=27.10 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=53.5
Q ss_pred ceeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
++|..|..+.|...|+.+.+.- .-+|+|+-+...+...+.+.+ . . +.++... .|-
T Consensus 4 ii~~~n~~~~l~~~l~sl~~q~~~~~evivvdd~s~d~~~~~~~~-~----~-------~~~~~~~-----------~g~ 60 (221)
T cd02522 4 IIPTLNEAENLPRLLASLRRLNPLPLEIIVVDGGSTDGTVAIARS-A----G-------VVVISSP-----------KGR 60 (221)
T ss_pred EEEccCcHHHHHHHHHHHHhccCCCcEEEEEeCCCCccHHHHHhc-C----C-------eEEEeCC-----------cCH
Confidence 3566665356777777776642 356666654433444444432 1 0 2233221 255
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcC
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~ 156 (422)
+.+...+..... .+.++++..|.....+ +..++.......
T Consensus 61 ~~a~n~g~~~a~------~~~i~~~D~D~~~~~~~l~~l~~~~~~~~ 101 (221)
T cd02522 61 ARQMNAGAAAAR------GDWLLFLHADTRLPPDWDAAIIETLRADG 101 (221)
T ss_pred HHHHHHHHHhcc------CCEEEEEcCCCCCChhHHHHHHHHhhcCC
Confidence 666665655554 4889999999977666 566655554433
No 299
>cd02520 Glucosylceramide_synthase Glucosylceramide synthase catalyzes the first glycosylation step of glycosphingolipid synthesis. UDP-glucose:N-acylsphingosine D-glucosyltransferase (glucosylceramide synthase or ceramide glucosyltransferase) catalyzes the first glycosylation step of glycosphingolipid synthesis. Its product, glucosylceramide, serves as the core of more than 300 glycosphingolipids (GSL). GSLs are a group of membrane components that have the lipid portion embedded in the outer plasma membrane leaflet and the sugar chains extended to the outer environment. Several lines of evidence suggest the importance of GSLs in various cellular processes such as differentiation, adhesion, proliferation, and cell-cell recognition. In pathogenic fungus Cryptococcus neoformans, glucosylceramide serves as an antigen that elicits an antibody response in patients and it is essential for fungal growth in host extracellular environment.
Probab=55.42 E-value=1.3e+02 Score=25.71 Aligned_cols=103 Identities=9% Similarity=0.024 Sum_probs=50.4
Q ss_pred ceeeCCcceeehhhhhhhhhc--CCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCc
Q 014564 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGT 110 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~--gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~ 110 (422)
.+|+.|..+-|...|+.+.+. .--+++||.....+...+.+++.. . .+....+.++......+ ..+-
T Consensus 6 iip~~n~~~~l~~~L~sl~~q~~~~~eiivVdd~s~d~t~~~~~~~~---~--~~~~~~~~~~~~~~~~g------~~~~ 74 (196)
T cd02520 6 LKPLCGVDPNLYENLESFFQQDYPKYEILFCVQDEDDPAIPVVRKLI---A--KYPNVDARLLIGGEKVG------INPK 74 (196)
T ss_pred EEecCCCCccHHHHHHHHHhccCCCeEEEEEeCCCcchHHHHHHHHH---H--HCCCCcEEEEecCCcCC------CCHh
Confidence 355555435567777777653 224676666544433323332210 0 00100133333222210 0122
Q ss_pred HHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHH
Q 014564 111 ADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (422)
Q Consensus 111 ~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~ 152 (422)
+.++..+..... .+-++++.+|.....+ +..+++..
T Consensus 75 ~~~~n~g~~~a~------~d~i~~~D~D~~~~~~~l~~l~~~~ 111 (196)
T cd02520 75 VNNLIKGYEEAR------YDILVISDSDISVPPDYLRRMVAPL 111 (196)
T ss_pred HHHHHHHHHhCC------CCEEEEECCCceEChhHHHHHHHHh
Confidence 344444444433 4888999999977666 67777654
No 300
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional
Probab=55.02 E-value=20 Score=39.39 Aligned_cols=28 Identities=11% Similarity=0.175 Sum_probs=15.1
Q ss_pred eEeCCC-cEEeeeEeCCCcEECCCeEEcc
Q 014564 360 VGIGEN-TKIKECIIDKNARIGKNVIIAN 387 (422)
Q Consensus 360 ~~i~~~-~~i~~~~i~~~~~i~~~~~i~~ 387 (422)
+.++++ ++|++|.|+.+.+||.+++|.+
T Consensus 343 ~s~~~~s~~vE~s~l~~~~~ig~~~Iisg 371 (974)
T PRK13412 343 LTAENATLWIENSHVGEGWKLASRSIITG 371 (974)
T ss_pred cccCCCeEEEEeeEecCCeEEcCCcEEec
Confidence 455554 3355555555555555555544
No 301
>cd04185 GT_2_like_b Subfamily of Glycosyltransferase Family GT2 of unknown function. GT-2 includes diverse families of glycosyltransferases with a common GT-A type structural fold, which has two tightly associated beta/alpha/beta domains that tend to form a continuous central sheet of at least eight beta-strands. These are enzymes that catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. Glycosyltransferases have been classified into more than 90 distinct sequence based families.
Probab=54.23 E-value=1.2e+02 Score=26.06 Aligned_cols=100 Identities=8% Similarity=0.016 Sum_probs=55.8
Q ss_pred eeeCCcceeehhhhhhhhhcC--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 34 VPIGGAYRLIDVPMSNCINSG--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
+|..|....|..+|+.+.+.. ..+|+|+-+...+...+.+++.. .. .. +.++..... .|.+
T Consensus 3 I~~~n~~~~l~~~l~sl~~q~~~~~eiiivD~~s~d~t~~~~~~~~---~~--~~---i~~~~~~~n---------~g~~ 65 (202)
T cd04185 3 VVTYNRLDLLKECLDALLAQTRPPDHIIVIDNASTDGTAEWLTSLG---DL--DN---IVYLRLPEN---------LGGA 65 (202)
T ss_pred EEeeCCHHHHHHHHHHHHhccCCCceEEEEECCCCcchHHHHHHhc---CC--Cc---eEEEECccc---------cchh
Confidence 455554356777888887653 24676665544455555554421 11 11 333332222 2566
Q ss_pred HHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHH
Q 014564 112 DAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (422)
Q Consensus 112 ~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~ 153 (422)
.++..+...... ...+.++++..|.+...+ +..+++...
T Consensus 66 ~~~n~~~~~a~~---~~~d~v~~ld~D~~~~~~~l~~l~~~~~ 105 (202)
T cd04185 66 GGFYEGVRRAYE---LGYDWIWLMDDDAIPDPDALEKLLAYAD 105 (202)
T ss_pred hHHHHHHHHHhc---cCCCEEEEeCCCCCcChHHHHHHHHHHh
Confidence 665555544421 114788999999988777 566666654
No 302
>KOG2978 consensus Dolichol-phosphate mannosyltransferase [General function prediction only]
Probab=54.05 E-value=1.5e+02 Score=25.88 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=58.4
Q ss_pred eeehhhhhhhhh-cCCcEEEEEee---cCh-HHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHH
Q 014564 41 RLIDVPMSNCIN-SGINKVYILTQ---YNS-ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVR 115 (422)
Q Consensus 41 pli~~~l~~l~~-~gi~~i~Iv~~---~~~-~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~ 115 (422)
|++-|.+..... .|.+-=+|++. ++. .+..+.+++.+ +.. .+-+.+-.. .+|.+.|..
T Consensus 19 pi~~~li~~~~~e~~~~~eiIivDD~SpDGt~~~a~~L~k~y--g~d------~i~l~pR~~---------klGLgtAy~ 81 (238)
T KOG2978|consen 19 PIITRLIAKYMSEEGKKYEIIIVDDASPDGTQEVAKALQKIY--GED------NILLKPRTK---------KLGLGTAYI 81 (238)
T ss_pred eeeHHHHHhhhhhhcCceEEEEEeCCCCCccHHHHHHHHHHh--CCC------cEEEEeccC---------cccchHHHH
Confidence 677777777655 35544444443 222 45556666544 211 144443222 358888998
Q ss_pred HHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEE
Q 014564 116 QFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITI 161 (422)
Q Consensus 116 ~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl 161 (422)
.+..++. .+.++++.+|+=-.+. +.++++...+.+.++++
T Consensus 82 hgl~~a~------g~fiviMDaDlsHhPk~ipe~i~lq~~~~~div~ 122 (238)
T KOG2978|consen 82 HGLKHAT------GDFIVIMDADLSHHPKFIPEFIRLQKEGNYDIVL 122 (238)
T ss_pred hhhhhcc------CCeEEEEeCccCCCchhHHHHHHHhhccCcceee
Confidence 8888876 3666778888754444 67888776666667644
No 303
>cd02511 Beta4Glucosyltransferase UDP-glucose LOS-beta-1,4 glucosyltransferase is required for biosynthesis of lipooligosaccharide. UDP-glucose: lipooligosaccharide (LOS) beta-1-4-glucosyltransferase catalyzes the addition of the first residue, glucose, of the lacto-N-neotetrase structure to HepI of the LOS inner core. LOS is the major constituent of the outer leaflet of the outer membrane of gram-positive bacteria. It consists of a short oligosaccharide chain of variable composition (alpha chain) attached to a branched inner core which is lined in turn to lipid A. Beta 1,4 glucosyltransferase is required to attach the alpha chain to the inner core.
Probab=50.98 E-value=1.5e+02 Score=26.40 Aligned_cols=93 Identities=12% Similarity=0.059 Sum_probs=54.1
Q ss_pred ceeeCCcceeehhhhhhhhhcCCcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHH
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGINKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTAD 112 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~ 112 (422)
++|.-|....|...|+.+... ..+|+|+-+...+...+.+++ + + +.++.. .. .|.+.
T Consensus 5 ii~~~Ne~~~l~~~l~sl~~~-~~eiivvD~gStD~t~~i~~~-~--~---------~~v~~~-~~---------~g~~~ 61 (229)
T cd02511 5 VIITKNEERNIERCLESVKWA-VDEIIVVDSGSTDRTVEIAKE-Y--G---------AKVYQR-WW---------DGFGA 61 (229)
T ss_pred EEEeCCcHHHHHHHHHHHhcc-cCEEEEEeCCCCccHHHHHHH-c--C---------CEEEEC-CC---------CChHH
Confidence 345555535567777777654 358877766544444443332 2 1 223222 11 36777
Q ss_pred HHHHHHHHhcCCCCCccCeEEEEcCCeeeecCh-HHHHHHHHH
Q 014564 113 AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY-MDFVQNHRQ 154 (422)
Q Consensus 113 al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l-~~ll~~~~~ 154 (422)
+...+..... .+-++++.+|.+...++ ..+.+...+
T Consensus 62 ~~n~~~~~a~------~d~vl~lDaD~~~~~~~~~~l~~~~~~ 98 (229)
T cd02511 62 QRNFALELAT------NDWVLSLDADERLTPELADEILALLAT 98 (229)
T ss_pred HHHHHHHhCC------CCEEEEEeCCcCcCHHHHHHHHHHHhC
Confidence 7777776655 47899999999877774 445554433
No 304
>PF13641 Glyco_tranf_2_3: Glycosyltransferase like family 2; PDB: 4FIY_B 4FIX_A.
Probab=49.90 E-value=38 Score=29.83 Aligned_cols=100 Identities=17% Similarity=0.182 Sum_probs=49.3
Q ss_pred ceeeCCcceeehhhhhhhhhc--CCcEEEEEeecChHHH---HHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINS--GINKVYILTQYNSASL---NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~--gi~~i~Iv~~~~~~~i---~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (422)
++|..|..+.+..+|+.+.+. .--+++|+.+...+.. .+.+...+ +...+.++......+ .
T Consensus 6 vip~~~~~~~l~~~l~sl~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~--------~~~~v~vi~~~~~~g------~ 71 (228)
T PF13641_consen 6 VIPAYNEDDVLRRCLESLLAQDYPRLEVVVVDDGSDDETAEILRALAARY--------PRVRVRVIRRPRNPG------P 71 (228)
T ss_dssp E--BSS-HHHHHHHHHHHTTSHHHTEEEEEEEE-SSS-GCTTHHHHHHTT--------GG-GEEEEE----HH------H
T ss_pred EEEecCCHHHHHHHHHHHHcCCCCCeEEEEEECCCChHHHHHHHHHHHHc--------CCCceEEeecCCCCC------c
Confidence 455655546677777777653 2355666664333332 22222222 111145554322210 1
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHH
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~ 152 (422)
.+.+.++..+....+ .+.++++..|.+.+++ +..+++.+
T Consensus 72 ~~k~~a~n~~~~~~~------~d~i~~lD~D~~~~p~~l~~~~~~~ 111 (228)
T PF13641_consen 72 GGKARALNEALAAAR------GDYILFLDDDTVLDPDWLERLLAAF 111 (228)
T ss_dssp HHHHHHHHHHHHH---------SEEEEE-SSEEE-CHHHHHHHHHH
T ss_pred chHHHHHHHHHHhcC------CCEEEEECCCcEECHHHHHHHHHHH
Confidence 135667777776655 4899999999988777 67778777
No 305
>PRK10018 putative glycosyl transferase; Provisional
Probab=48.89 E-value=2.3e+02 Score=26.40 Aligned_cols=97 Identities=11% Similarity=0.152 Sum_probs=55.1
Q ss_pred eeeCCcceeehhhhhhhhhcCCc--EEEEEeecCh--HHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 34 VPIGGAYRLIDVPMSNCINSGIN--KVYILTQYNS--ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi~--~i~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
+|..|....|..+|+.+.+.... +++|+-.... +.+.+++.+. ... .+.++..... .|
T Consensus 11 ip~yN~~~~l~~~l~Svl~Qt~~~~EiIVVDDgS~~~~~~~~~~~~~---~~~------ri~~i~~~~n---------~G 72 (279)
T PRK10018 11 MPTWNRQQLAIRAIKSVLRQDYSNWEMIIVDDCSTSWEQLQQYVTAL---NDP------RITYIHNDIN---------SG 72 (279)
T ss_pred EEeCCCHHHHHHHHHHHHhCCCCCeEEEEEECCCCCHHHHHHHHHHc---CCC------CEEEEECCCC---------CC
Confidence 34445434566777777654333 5555543222 2344444321 111 1445443333 37
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
.+.+.-.+..... .+.++++.+|....++ +..+++...+
T Consensus 73 ~~~a~N~gi~~a~------g~~I~~lDaDD~~~p~~l~~~~~~~~~ 112 (279)
T PRK10018 73 ACAVRNQAIMLAQ------GEYITGIDDDDEWTPNRLSVFLAHKQQ 112 (279)
T ss_pred HHHHHHHHHHHcC------CCEEEEECCCCCCCccHHHHHHHHHHh
Confidence 7777777766655 4899999999987776 6777776544
No 306
>TIGR03469 HonB hopene-associated glycosyltransferase HpnB. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The genes of this family are often found in the same genetic locus with squalene-hopene cyclase genes, and are never associated with genes for the metabolism of phytoene. Indeed, the members of this family appear to never be found in a genome lacking squalene-hopene cyclase (SHC), although not all genomes encoding SHC have this glycosyl transferase. In the organism Zymomonas mobilis the linkage of this gene to hopanoid biosynthesis has been noted and the gene named HpnB. Hopanoids are known to feature polar glycosyl head groups in many organisms.
Probab=47.98 E-value=1.8e+02 Score=28.34 Aligned_cols=114 Identities=20% Similarity=0.238 Sum_probs=62.1
Q ss_pred ceeeCCcceeehhhhhhhhhcCC---cEEEEEeecChHHHHHHHH---hhccCCCCcccCCCeEEEeccCCCCCcCCccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSASLNRHLA---RAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi---~~i~Iv~~~~~~~i~~~l~---~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (422)
.+|.-|....|...|+.+.+... -+|+||-+...+...+.++ +.+ .... .++++.....+ .+
T Consensus 45 IIpa~Ne~~~L~~~L~sL~~q~yp~~~eIIVVDd~StD~T~~i~~~~~~~~--~~~~-----~i~vi~~~~~~--~g--- 112 (384)
T TIGR03469 45 VVPARNEADVIGECVTSLLEQDYPGKLHVILVDDHSTDGTADIARAAARAY--GRGD-----RLTVVSGQPLP--PG--- 112 (384)
T ss_pred EEecCCcHhHHHHHHHHHHhCCCCCceEEEEEeCCCCCcHHHHHHHHHHhc--CCCC-----cEEEecCCCCC--CC---
Confidence 55666655778888888876532 3677776544433333222 221 1000 14454322111 01
Q ss_pred ccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcE
Q 014564 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 107 ~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~ 159 (422)
..|-..++..+.+...+. ....+-++++.+|...+++ +..+++...+.+.++
T Consensus 113 ~~Gk~~A~n~g~~~A~~~-~~~gd~llflDaD~~~~p~~l~~lv~~~~~~~~~~ 165 (384)
T TIGR03469 113 WSGKLWAVSQGIAAARTL-APPADYLLLTDADIAHGPDNLARLVARARAEGLDL 165 (384)
T ss_pred CcchHHHHHHHHHHHhcc-CCCCCEEEEECCCCCCChhHHHHHHHHHHhCCCCE
Confidence 125555666665554421 0013789999999987776 688888777665554
No 307
>PF05060 MGAT2: N-acetylglucosaminyltransferase II (MGAT2); InterPro: IPR007754 N-acetylglucosaminyltransferase II (2.4.1.143 from EC) is a Golgi resident enzyme that catalyzes an essential step in the biosynthetic pathway leading from high mannose to complex N-linked oligosaccharides []. Mutations in the MGAT2 gene lead to a congenital disorder of glycosylation (CDG IIa). CDG IIa patients have an increased bleeding tendency, unrelated to coagulation factors []. Synonym(s): UDP-N-acetyl-D-glucosamine:alpha-6-D-mannoside beta-1,2-N- acetylglucosaminyltransferase II, GnT II/MGAT2.; GO: 0008455 alpha-1,6-mannosylglycoprotein 2-beta-N-acetylglucosaminyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0005795 Golgi stack, 0016021 integral to membrane
Probab=47.89 E-value=22 Score=34.23 Aligned_cols=56 Identities=11% Similarity=0.214 Sum_probs=46.2
Q ss_pred CccCCcccccCcCcceeeCCcceeehhhhhhhhhc-CCcEEEEEeecCh--HHHHHHHH
Q 014564 19 GTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINS-GINKVYILTQYNS--ASLNRHLA 74 (422)
Q Consensus 19 g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~-gi~~i~Iv~~~~~--~~i~~~l~ 74 (422)
..+|.||....+.-++-|.+++..+.+.|+.|.++ ||++..+|.+++. +++.+.++
T Consensus 22 ~~~f~~l~~~~~vivvqVH~r~~yl~~li~sL~~~~~I~~~llifSHd~~~~ein~~v~ 80 (356)
T PF05060_consen 22 EDKFGPLANDSIVIVVQVHNRPEYLKLLIDSLSQARGIEEALLIFSHDFYSEEINDLVQ 80 (356)
T ss_pred hhhcCCCCCCCEEEEEEECCcHHHHHHHHHHHHHhhCccceEEEEeccCChHHHHHHHH
Confidence 35677788788888899999977889999999998 9999999998765 66766664
No 308
>TIGR03472 HpnI hopanoid biosynthesis associated glycosyl transferase protein HpnI. This family of genes include a glycosyl transferase, group 2 domain (pfam00535) which are responsible, generally for the transfer of nucleotide-diphosphate sugars to substrates such as polysaccharides and lipids. The member of this clade from Acidithiobacillus ferrooxidans ATCC 23270 (AFE_0974) is found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. Similarly, in Ralstonia eutropha JMP134 (Reut_B4902) this gene is adjacent to HpnAB, IspH and HpnH (TIGR03470), although SHC itself is elsewhere in the genome. Notably, this gene (here named HpnI) and three others form a conserved set (HpnIJKL) which occur in a subset of all genomes containing the SHC enzyme. This relationship was discerned using the method of partial phylogenetic profiling. This group includes Zymomonas mobilis, the organism where the initial hopano
Probab=47.32 E-value=1.3e+02 Score=29.29 Aligned_cols=102 Identities=10% Similarity=0.065 Sum_probs=55.6
Q ss_pred ceeeCCcceeehhhhhhhhhcCC--cEEEEEeecChHH---HHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccc
Q 014564 33 AVPIGGAYRLIDVPMSNCINSGI--NKVYILTQYNSAS---LNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWF 107 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~gi--~~i~Iv~~~~~~~---i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~ 107 (422)
++|..|..+.|...|+.+.+..- -+|+++.....+. +.+.+.+.++ + ..+.++...+..+ .
T Consensus 46 iiP~~nee~~l~~~L~Sl~~q~Yp~~EIivvdd~s~D~t~~iv~~~~~~~p--~------~~i~~v~~~~~~G------~ 111 (373)
T TIGR03472 46 LKPLHGDEPELYENLASFCRQDYPGFQMLFGVQDPDDPALAVVRRLRADFP--D------ADIDLVIDARRHG------P 111 (373)
T ss_pred EEECCCCChhHHHHHHHHHhcCCCCeEEEEEeCCCCCcHHHHHHHHHHhCC--C------CceEEEECCCCCC------C
Confidence 67777766778888888876532 4666655433332 2222333221 1 1144443222211 0
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ 154 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~ 154 (422)
.+-..++.++.+..+ .+-++++.+|.....+ ++.+++.+.+
T Consensus 112 ~~K~~~l~~~~~~a~------ge~i~~~DaD~~~~p~~L~~lv~~~~~ 153 (373)
T TIGR03472 112 NRKVSNLINMLPHAR------HDILVIADSDISVGPDYLRQVVAPLAD 153 (373)
T ss_pred ChHHHHHHHHHHhcc------CCEEEEECCCCCcChhHHHHHHHHhcC
Confidence 122344444443333 5899999999988777 6777776643
No 309
>PRK11498 bcsA cellulose synthase catalytic subunit; Provisional
Probab=46.92 E-value=1.5e+02 Score=32.47 Aligned_cols=104 Identities=13% Similarity=0.106 Sum_probs=60.0
Q ss_pred ceeeCCcce--eehhhhhhhhhcC--C--cEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCccc
Q 014564 33 AVPIGGAYR--LIDVPMSNCINSG--I--NKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRW 106 (422)
Q Consensus 33 Llpv~gk~p--li~~~l~~l~~~g--i--~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 106 (422)
++|..|. + ++..++..+.... - -+|+|+=....++..+..++ . + +.++......
T Consensus 265 iIPtYNE-~~~vv~~tI~a~l~~dYP~~k~EViVVDDgS~D~t~~la~~-~----~-------v~yI~R~~n~------- 324 (852)
T PRK11498 265 FVPTYNE-DLNVVKNTIYASLGIDWPKDKLNIWILDDGGREEFRQFAQE-V----G-------VKYIARPTHE------- 324 (852)
T ss_pred EEecCCC-cHHHHHHHHHHHHhccCCCCceEEEEEeCCCChHHHHHHHH-C----C-------cEEEEeCCCC-------
Confidence 4566676 4 4566676665432 1 25666655555666655543 1 1 3333221111
Q ss_pred ccCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcCCcEEEEEe
Q 014564 107 FQGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSGADITISCL 164 (422)
Q Consensus 107 ~~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~tl~~~ 164 (422)
.+-++++-.+....+ .+.++++.+|.+...+ +..++..+.++. .+.++..
T Consensus 325 -~gKAGnLN~aL~~a~------GEyIavlDAD~ip~pdfL~~~V~~f~~dP-~VglVQt 375 (852)
T PRK11498 325 -HAKAGNINNALKYAK------GEFVAIFDCDHVPTRSFLQMTMGWFLKDK-KLAMMQT 375 (852)
T ss_pred -cchHHHHHHHHHhCC------CCEEEEECCCCCCChHHHHHHHHHHHhCC-CeEEEEc
Confidence 255778877777655 4899999999998777 466666654433 3444443
No 310
>PTZ00260 dolichyl-phosphate beta-glucosyltransferase; Provisional
Probab=46.08 E-value=1.4e+02 Score=28.51 Aligned_cols=50 Identities=18% Similarity=0.206 Sum_probs=34.1
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHH---cCCcEEEEE
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQ---SGADITISC 163 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~---~~~~~tl~~ 163 (422)
.|.+.|+..+..... .+.++++.+|...+.+ +..+++...+ .+.++.+..
T Consensus 148 ~G~~~A~~~Gi~~a~------gd~I~~~DaD~~~~~~~l~~l~~~l~~~~~~~~dvV~Gs 201 (333)
T PTZ00260 148 KGKGGAVRIGMLASR------GKYILMVDADGATDIDDFDKLEDIMLKIEQNGLGIVFGS 201 (333)
T ss_pred CChHHHHHHHHHHcc------CCEEEEEeCCCCCCHHHHHHHHHHHHHhhccCCceEEee
Confidence 388889988876654 4889999999976665 5666665543 445554443
No 311
>TIGR01556 rhamnosyltran L-rhamnosyltransferase. Rhamnolipids are glycolipids containing mono- or di- L-rhamnose molecules. Rhamnolipid synthesis occurs by sequential glycosyltransferase reactions involving two distinct rhamnosyltransferase enzymes. In P.aeruginosa, the synthesis of mono-rhamnolipids is catalyzed by rhamnosyltransferase 1, and proceeds by a glycosyltransfer reaction catalyzed by rhamnosyltransferase 2 to yield di-rhamnolipids.
Probab=43.15 E-value=2e+02 Score=26.44 Aligned_cols=90 Identities=12% Similarity=0.047 Sum_probs=52.1
Q ss_pred eehhhhhhhhhcCCcEEEEEeecC--hHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHH
Q 014564 42 LIDVPMSNCINSGINKVYILTQYN--SASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHW 119 (422)
Q Consensus 42 li~~~l~~l~~~gi~~i~Iv~~~~--~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~ 119 (422)
.|...|+.+.+. ..+|+||=+.. .+.+.+.+.+ . . .+.++..... .|-+.|.-.+.+
T Consensus 9 ~l~~~l~sl~~q-~~~iiVVDN~S~~~~~~~~~~~~-~---~-------~i~~i~~~~N---------~G~a~a~N~Gi~ 67 (281)
T TIGR01556 9 HLGELITSLPKQ-VDRIIAVDNSPHSDQPLKNARLR-G---Q-------KIALIHLGDN---------QGIAGAQNQGLD 67 (281)
T ss_pred HHHHHHHHHHhc-CCEEEEEECcCCCcHhHHHHhcc-C---C-------CeEEEECCCC---------cchHHHHHHHHH
Confidence 455566666654 35666554432 2234333221 1 0 1555554333 378888887776
Q ss_pred HhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 120 LFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 120 ~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
.+.. ...+.++++..|.....+ +..+++...+.
T Consensus 68 ~a~~---~~~d~i~~lD~D~~~~~~~l~~l~~~~~~~ 101 (281)
T TIGR01556 68 ASFR---RGVQGVLLLDQDSRPGNAFLAAQWKLLSAE 101 (281)
T ss_pred HHHH---CCCCEEEEECCCCCCCHHHHHHHHHHHHhc
Confidence 6532 114889999999987766 67777766544
No 312
>cd06913 beta3GnTL1_like Beta 1, 3-N-acetylglucosaminyltransferase is essential for the formation of poly-N-acetyllactosamine . This family includes human Beta3GnTL1 and related eukaryotic proteins. Human Beta3GnTL1 is a putative beta-1,3-N-acetylglucosaminyltransferase. Beta3GnTL1 is expressed at various levels in most of tissues examined. Beta 1, 3-N-acetylglucosaminyltransferase has been found to be essential for the formation of poly-N-acetyllactosamine. Poly-N-acetyllactosamine is a unique carbohydrate composed of N-acetyllactosamine repeats. It is often an important part of cell-type-specific oligosaccharide structures and some functional oligosaccharides. It has been shown that the structure and biosynthesis of poly-N-acetyllactosamine display a dramatic change during development and oncogenesis. Several members of beta-1, 3-N-acetylglucosaminyltransferase have been identified.
Probab=43.01 E-value=2e+02 Score=25.02 Aligned_cols=105 Identities=11% Similarity=0.069 Sum_probs=53.9
Q ss_pred eeeCCcceeehhhhhhhhhcCC---cEEEEEeecChHHHHHHHHhhc-cCCCCcccCCCeEEEec-cCCCCCcCCccccc
Q 014564 34 VPIGGAYRLIDVPMSNCINSGI---NKVYILTQYNSASLNRHLARAY-NYGSGVTFGDGCVEVLA-ATQTPGEAGKRWFQ 108 (422)
Q Consensus 34 lpv~gk~pli~~~l~~l~~~gi---~~i~Iv~~~~~~~i~~~l~~~~-~~~~~~~~~~~~v~i~~-~~~~~~~~~~~~~~ 108 (422)
+|..|....|..+|+.+.+... -+++|+-....+.....+.+.. .+.. .+ +.++. ..... ...
T Consensus 3 Ip~yn~~~~l~~~l~sl~~q~~~~~~eiiVvDd~S~d~t~~i~~~~~~~~~~-~~-----~~~~~~~~~~~------~~~ 70 (219)
T cd06913 3 LPVHNGEQWLDECLESVLQQDFEGTLELSVFNDASTDKSAEIIEKWRKKLED-SG-----VIVLVGSHNSP------SPK 70 (219)
T ss_pred EeecCcHHHHHHHHHHHHhCCCCCCEEEEEEeCCCCccHHHHHHHHHHhCcc-cC-----eEEEEecccCC------CCc
Confidence 5665554577778888866532 3666665433332222222210 0000 01 22221 11110 013
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcC
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~ 156 (422)
|.+.+.-.+..... .+.++++.+|.+...+ +..++....+..
T Consensus 71 G~~~a~N~g~~~a~------gd~i~~lD~D~~~~~~~l~~~~~~~~~~~ 113 (219)
T cd06913 71 GVGYAKNQAIAQSS------GRYLCFLDSDDVMMPQRIRLQYEAALQHP 113 (219)
T ss_pred cHHHHHHHHHHhcC------CCEEEEECCCccCChhHHHHHHHHHHhCC
Confidence 66666666555443 4899999999977666 666666665544
No 313
>PRK00923 sirohydrochlorin cobaltochelatase; Reviewed
Probab=42.44 E-value=34 Score=27.41 Aligned_cols=23 Identities=17% Similarity=0.385 Sum_probs=19.6
Q ss_pred CcceeehhhhhhhhhcCCcEEEEE
Q 014564 38 GAYRLIDVPMSNCINSGINKVYIL 61 (422)
Q Consensus 38 gk~pli~~~l~~l~~~gi~~i~Iv 61 (422)
+. |-++..++.|.+.|.++|+|+
T Consensus 44 ~~-P~l~~~l~~l~~~g~~~v~vv 66 (126)
T PRK00923 44 NE-PTIPEALKKLIGTGADKIIVV 66 (126)
T ss_pred CC-CCHHHHHHHHHHcCCCEEEEE
Confidence 56 888999999999999988776
No 314
>cd06435 CESA_NdvC_like NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. NdvC_like proteins in this family are putative bacterial beta-(1,6)-glucosyltransferase. Bradyrhizobium japonicum synthesizes periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans during growth under hypoosmotic conditions. Two genes (ndvB, ndvC) are involved in the beta-(1, 3), beta-(1,6)-glucan synthesis. The ndvC mutant strain resulted in synthesis of altered cyclic beta-glucans composed almost entirely of beta-(1, 3)-glycosyl linkages. The periplasmic cyclic beta-(1,3),beta-(1,6)-D-glucans function for osmoregulation. The ndvC mutation also affects the ability of the bacteria to establish a successful symbiotic interaction with host plant. Thus, the beta-glucans may function as suppressors of a host defense response.
Probab=41.85 E-value=2e+02 Score=25.33 Aligned_cols=98 Identities=14% Similarity=0.129 Sum_probs=55.1
Q ss_pred ceeeCCcc-eeehhhhhhhhhcCC--cEEEEEeecChH-HH----HHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCc
Q 014564 33 AVPIGGAY-RLIDVPMSNCINSGI--NKVYILTQYNSA-SL----NRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGK 104 (422)
Q Consensus 33 Llpv~gk~-pli~~~l~~l~~~gi--~~i~Iv~~~~~~-~i----~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~ 104 (422)
++|..|.. .+|...|+.+.+... -+++|+-+...+ .. +++..+ + ... +.++.....
T Consensus 3 iip~~ne~~~~l~~~l~sl~~q~~~~~eiiVvdd~s~D~t~~~~i~~~~~~-~--~~~-------i~~i~~~~~------ 66 (236)
T cd06435 3 HVPCYEEPPEMVKETLDSLAALDYPNFEVIVIDNNTKDEALWKPVEAHCAQ-L--GER-------FRFFHVEPL------ 66 (236)
T ss_pred eEeeCCCcHHHHHHHHHHHHhCCCCCcEEEEEeCCCCchhHHHHHHHHHHH-h--CCc-------EEEEEcCCC------
Confidence 46777763 267888888877643 366666543322 22 233222 1 111 333332222
Q ss_pred ccccC-cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHH
Q 014564 105 RWFQG-TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHR 153 (422)
Q Consensus 105 ~~~~g-~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~ 153 (422)
.| -++++-.+...+.. ..+.++++.+|.+...+ +..++....
T Consensus 67 ---~G~~~~a~n~g~~~a~~----~~d~i~~lD~D~~~~~~~l~~l~~~~~ 110 (236)
T cd06435 67 ---PGAKAGALNYALERTAP----DAEIIAVIDADYQVEPDWLKRLVPIFD 110 (236)
T ss_pred ---CCCchHHHHHHHHhcCC----CCCEEEEEcCCCCcCHHHHHHHHHHhc
Confidence 14 36677776665531 14789999999977776 677777654
No 315
>PRK10063 putative glycosyl transferase; Provisional
Probab=38.03 E-value=3.1e+02 Score=24.84 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=29.0
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHc
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQS 155 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~ 155 (422)
|.+.|+-.+..... .+.++.+.+|.+..++..+++......
T Consensus 69 G~~~A~N~Gi~~a~------g~~v~~ld~DD~~~~~~~~~~~~~~~~ 109 (248)
T PRK10063 69 GIYDAMNKGIAMAQ------GRFALFLNSGDIFHQDAANFVRQLKMQ 109 (248)
T ss_pred CHHHHHHHHHHHcC------CCEEEEEeCCcccCcCHHHHHHHHHhC
Confidence 88888888877665 488899998887776654455544333
No 316
>COG1215 Glycosyltransferases, probably involved in cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=37.30 E-value=1.6e+02 Score=28.95 Aligned_cols=104 Identities=13% Similarity=0.151 Sum_probs=67.0
Q ss_pred ceeeCCcce-eehhhhhhhhhcCCc--EEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccC
Q 014564 33 AVPIGGAYR-LIDVPMSNCINSGIN--KVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQG 109 (422)
Q Consensus 33 Llpv~gk~p-li~~~l~~l~~~gi~--~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g 109 (422)
++|.-|..+ .++.+++.+.+.... +++++.....+...+.+.+... +++ ..+.+...... ..|
T Consensus 59 iiP~ynE~~~~~~~~l~s~~~~dyp~~evivv~d~~~d~~~~~~~~~~~-----~~~-~~~~~~~~~~~--------~~g 124 (439)
T COG1215 59 IIPAYNEEPEVLEETLESLLSQDYPRYEVIVVDDGSTDETYEILEELGA-----EYG-PNFRVIYPEKK--------NGG 124 (439)
T ss_pred EEecCCCchhhHHHHHHHHHhCCCCCceEEEECCCCChhHHHHHHHHHh-----hcC-cceEEEecccc--------Ccc
Confidence 556667656 899999999887533 7878776555666666654321 110 01223211011 136
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHcC
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQSG 156 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~~ 156 (422)
-+.++..+....+ .+-++++.+|.+...+ +..++..+....
T Consensus 125 K~~al~~~l~~~~------~d~V~~~DaD~~~~~d~l~~~~~~f~~~~ 166 (439)
T COG1215 125 KAGALNNGLKRAK------GDVVVILDADTVPEPDALRELVSPFEDPP 166 (439)
T ss_pred chHHHHHHHhhcC------CCEEEEEcCCCCCChhHHHHHHhhhcCCC
Confidence 7888888877665 4889999999988888 688887776544
No 317
>cd06437 CESA_CaSu_A2 Cellulose synthase catalytic subunit A2 (CESA2) is a catalytic subunit or a catalytic subunit substitute of the cellulose synthase complex. Cellulose synthase (CESA) catalyzes the polymerization reaction of cellulose using UDP-glucose as the substrate. Cellulose is an aggregate of unbranched polymers of beta-1,4-linked glucose residues, which is an abundant polysaccharide produced by plants and in varying degrees by several other organisms including algae, bacteria, fungi, and even some animals. Genomes from higher plants harbor multiple CESA genes. There are ten in Arabidopsis. At least three different CESA proteins are required to form a functional complex. In Arabidopsis, CESA1, 3 and 6 and CESA4, 7 and 8, are required for cellulose biosynthesis during primary and secondary cell wall formation. CESA2 is very closely related to CESA6 and is viewed as a prime substitute for CESA6. They functionally compensate each other. The cesa2 and cesa6 double mutant plants we
Probab=37.07 E-value=1.4e+02 Score=26.26 Aligned_cols=37 Identities=19% Similarity=0.026 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHH
Q 014564 110 TADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNH 152 (422)
Q Consensus 110 ~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~ 152 (422)
.+.++..+....+ .+.++++.+|.+...+ +..+....
T Consensus 75 k~~a~n~g~~~a~------~~~i~~~DaD~~~~~~~l~~~~~~~ 112 (232)
T cd06437 75 KAGALAEGMKVAK------GEYVAIFDADFVPPPDFLQKTPPYF 112 (232)
T ss_pred chHHHHHHHHhCC------CCEEEEEcCCCCCChHHHHHhhhhh
Confidence 4567766666554 5899999999988777 56644433
No 318
>COG0381 WecB UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]
Probab=34.94 E-value=94 Score=30.31 Aligned_cols=81 Identities=14% Similarity=0.211 Sum_probs=47.2
Q ss_pred hhhhhhcC-CcEEEEEeecCh--HHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHHHHhcC
Q 014564 47 MSNCINSG-INKVYILTQYNS--ASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFHWLFED 123 (422)
Q Consensus 47 l~~l~~~g-i~~i~Iv~~~~~--~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~~~l~~ 123 (422)
+..+.+.+ ++.++++|+.+. +....++.. +.... ..+. +.+..+.++. ..-|+..+......+.+
T Consensus 23 i~~~~~~~~~~~~vi~TGQH~d~em~~~~le~-~~i~~-pdy~---L~i~~~~~tl-------~~~t~~~i~~~~~vl~~ 90 (383)
T COG0381 23 VKALEKDPDFELIVIHTGQHRDYEMLDQVLEL-FGIRK-PDYD---LNIMKPGQTL-------GEITGNIIEGLSKVLEE 90 (383)
T ss_pred HHHHHhCCCCceEEEEecccccHHHHHHHHHH-hCCCC-CCcc---hhccccCCCH-------HHHHHHHHHHHHHHHHh
Confidence 45566665 999999999776 555555543 22211 2221 3333222221 23466666666677765
Q ss_pred CCCCccCeEEEEcCCeeeec
Q 014564 124 PRNKVIEDVLILSGDHLYRM 143 (422)
Q Consensus 124 ~~~~~~~~~lv~~gD~i~~~ 143 (422)
. ..|.+++.||+-+..
T Consensus 91 ~----kPD~VlVhGDT~t~l 106 (383)
T COG0381 91 E----KPDLVLVHGDTNTTL 106 (383)
T ss_pred h----CCCEEEEeCCcchHH
Confidence 3 578999999997643
No 319
>PRK13915 putative glucosyl-3-phosphoglycerate synthase; Provisional
Probab=34.47 E-value=2.8e+02 Score=26.17 Aligned_cols=49 Identities=10% Similarity=0.098 Sum_probs=33.3
Q ss_pred cCcHHHHHHHHHHhcCCCCCccCeEEEEcCCee-eecC-hHHHHHHHHH-cCCcEEEE
Q 014564 108 QGTADAVRQFHWLFEDPRNKVIEDVLILSGDHL-YRMD-YMDFVQNHRQ-SGADITIS 162 (422)
Q Consensus 108 ~g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i-~~~~-l~~ll~~~~~-~~~~~tl~ 162 (422)
.|-+.++..+..... .+.++++.+|.. .+.+ +..+++.... .+.++...
T Consensus 101 ~Gkg~A~~~g~~~a~------gd~vv~lDaD~~~~~p~~l~~l~~~l~~~~~~~~V~g 152 (306)
T PRK13915 101 PGKGEALWRSLAATT------GDIVVFVDADLINFDPMFVPGLLGPLLTDPGVHLVKA 152 (306)
T ss_pred CCHHHHHHHHHHhcC------CCEEEEEeCccccCCHHHHHHHHHHHHhCCCceEEEE
Confidence 377788877765544 488999999996 5555 6778877653 34454443
No 320
>cd06436 GlcNAc-1-P_transferase N-acetyl-glucosamine transferase is involved in the synthesis of Poly-beta-1,6-N-acetyl-D-glucosamine. N-acetyl-glucosamine transferase is responsible for the synthesis of bacteria Poly-beta-1,6-N-acetyl-D-glucosamine (PGA). Poly-beta-1,6-N-acetyl-D-glucosamine is a homopolymer that serves as an adhesion for the maintenance of biofilm structural stability in diverse eubacteria. N-acetyl-glucosamine transferase is the product of gene pgaC. Genetic analysis indicated that all four genes of the pgaABCD locus were required for the PGA production, pgaC being a glycosyltransferase.
Probab=33.82 E-value=3e+02 Score=23.45 Aligned_cols=106 Identities=11% Similarity=0.018 Sum_probs=55.7
Q ss_pred ceeeCCcceeehhhhhhhhhcC-CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcH
Q 014564 33 AVPIGGAYRLIDVPMSNCINSG-INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTA 111 (422)
Q Consensus 33 Llpv~gk~pli~~~l~~l~~~g-i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~ 111 (422)
++|..|....|..+|+.+.+.. --+|+|+-....+...+.++... ... .+.++...... ...|-+
T Consensus 2 iIp~~Ne~~~l~~~l~sl~~~~~~~eIivvdd~S~D~t~~~~~~~~-~~~-------~v~~i~~~~~~------~~~Gk~ 67 (191)
T cd06436 2 LVPCLNEEAVIQRTLASLLRNKPNFLVLVIDDASDDDTAGIVRLAI-TDS-------RVHLLRRHLPN------ARTGKG 67 (191)
T ss_pred EEeccccHHHHHHHHHHHHhCCCCeEEEEEECCCCcCHHHHHhhee-cCC-------cEEEEeccCCc------CCCCHH
Confidence 3566665467778888887653 23566665544444444443010 011 13343211000 013778
Q ss_pred HHHHHHHHHhcCCC---C--CccCeEEEEcCCeeeecC-hHHHHHHH
Q 014564 112 DAVRQFHWLFEDPR---N--KVIEDVLILSGDHLYRMD-YMDFVQNH 152 (422)
Q Consensus 112 ~al~~~~~~l~~~~---~--~~~~~~lv~~gD~i~~~~-l~~ll~~~ 152 (422)
.++..+...+.... + ...+-++++.+|.....+ +..+.+..
T Consensus 68 ~aln~g~~~~~~~~~~~g~~~~~d~v~~~DaD~~~~~~~l~~~~~~~ 114 (191)
T cd06436 68 DALNAAYDQIRQILIEEGADPERVIIAVIDADGRLDPNALEAVAPYF 114 (191)
T ss_pred HHHHHHHHHHhhhccccccCCCccEEEEECCCCCcCHhHHHHHHHhh
Confidence 88888777653100 0 002468999999988777 56554444
No 321
>TIGR03030 CelA cellulose synthase catalytic subunit (UDP-forming). Cellulose synthase catalyzes the beta-1,4 polymerization of glucose residues in the formation of cellulose. In bacteria, the substrate is UDP-glucose. The synthase consists of two subunits (or domains in the frequent cases where it is encoded as a single polypeptide), the catalytic domain modelled here and the regulatory domain (pfam03170). The regulatory domain binds the allosteric activator cyclic di-GMP. The protein is membrane-associated and probably assembles into multimers such that the individual cellulose strands can self-assemble into multi-strand fibrils.
Probab=32.33 E-value=3.4e+02 Score=29.16 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=30.3
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecC-hHHHHHHHHHc
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMD-YMDFVQNHRQS 155 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~-l~~ll~~~~~~ 155 (422)
+-++++..+.+..+ .+.++++.+|.+...+ +..++..+.+.
T Consensus 215 ~KAgnLN~al~~a~------gd~Il~lDAD~v~~pd~L~~~v~~f~~d 256 (713)
T TIGR03030 215 AKAGNINNALKHTD------GELILIFDADHVPTRDFLQRTVGWFVED 256 (713)
T ss_pred CChHHHHHHHHhcC------CCEEEEECCCCCcChhHHHHHHHHHHhC
Confidence 44677777776654 4899999999988877 57777766443
No 322
>cd03409 Chelatase_Class_II Class II Chelatase: a family of ATP-independent monomeric or homodimeric enzymes that catalyze the insertion of metal into protoporphyrin rings. This family includes protoporphyrin IX ferrochelatase (HemH), sirohydrochlorin ferrochelatase (SirB) and the cobaltochelatases, CbiK and CbiX. HemH and SirB are involved in heme and siroheme biosynthesis, respectively, while the cobaltochelatases are associated with cobalamin biosynthesis. Excluded from this family are the ATP-dependent heterotrimeric chelatases (class I) and the multifunctional homodimeric enzymes with dehydrogenase and chelatase activities (class III).
Probab=31.60 E-value=60 Score=24.51 Aligned_cols=22 Identities=14% Similarity=0.231 Sum_probs=16.8
Q ss_pred eeehhhhhhhhhcCCcEEEEEe
Q 014564 41 RLIDVPMSNCINSGINKVYILT 62 (422)
Q Consensus 41 pli~~~l~~l~~~gi~~i~Iv~ 62 (422)
|-++..++.|...|+++|+++-
T Consensus 45 P~i~~~l~~l~~~g~~~vvvvP 66 (101)
T cd03409 45 PDTEEAIRELAEEGYQRVVIVP 66 (101)
T ss_pred CCHHHHHHHHHHcCCCeEEEEe
Confidence 7777788888777888877664
No 323
>COG1664 CcmA Integral membrane protein CcmA involved in cell shape determination [Cell envelope biogenesis, outer membrane]
Probab=27.22 E-value=3.7e+02 Score=22.38 Aligned_cols=26 Identities=8% Similarity=-0.024 Sum_probs=15.1
Q ss_pred eeeeeEEcCC-cEECCCCEEcceEEEC
Q 014564 314 FIEHSVVGIR-SRINANVHLKDTMMLG 339 (422)
Q Consensus 314 ~v~~s~ig~~-~~i~~~~~i~~~~~~~ 339 (422)
.+...+...+ +.|++..+|++.+...
T Consensus 47 ~~~G~v~s~~~iiv~~~g~V~gei~a~ 73 (146)
T COG1664 47 TFEGDVHSDGGIVVGESGRVEGEIEAE 73 (146)
T ss_pred EEEEEEEeCCCEEECCccEEEEEEEeC
Confidence 3344444444 7777777776666654
No 324
>COG1216 Predicted glycosyltransferases [General function prediction only]
Probab=27.17 E-value=3.5e+02 Score=25.29 Aligned_cols=97 Identities=11% Similarity=0.059 Sum_probs=54.5
Q ss_pred eeehhhhhhhhhcCCcEEEE--EeecChHHHHHHHHhhccCCCCcccCCCeEEEeccCCCCCcCCcccccCcHHHHHHHH
Q 014564 41 RLIDVPMSNCINSGINKVYI--LTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLAATQTPGEAGKRWFQGTADAVRQFH 118 (422)
Q Consensus 41 pli~~~l~~l~~~gi~~i~I--v~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~g~~~al~~~~ 118 (422)
..+...|+.+.++......+ +-+...+...+.++... +. .+.++..... .|-+++.-.+.
T Consensus 16 ~~l~~~l~~l~~~~~~~~~iv~vDn~s~d~~~~~~~~~~-~~--------~v~~i~~~~N---------lG~agg~n~g~ 77 (305)
T COG1216 16 EDLVECLASLAAQTYPDDVIVVVDNGSTDGSLEALKARF-FP--------NVRLIENGEN---------LGFAGGFNRGI 77 (305)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEccCCCCCCCHHHHHhhc-CC--------cEEEEEcCCC---------ccchhhhhHHH
Confidence 34555666666654333333 34444455555555431 01 1556554444 25555555443
Q ss_pred HHhcCCCCCccC-eEEEEcCCeeeecC-hHHHHHHHHHcCCcE
Q 014564 119 WLFEDPRNKVIE-DVLILSGDHLYRMD-YMDFVQNHRQSGADI 159 (422)
Q Consensus 119 ~~l~~~~~~~~~-~~lv~~gD~i~~~~-l~~ll~~~~~~~~~~ 159 (422)
...... .. .+++++-|++.+.+ +.++++.+.+.+..+
T Consensus 78 ~~a~~~----~~~~~l~LN~D~~~~~~~l~~ll~~~~~~~~~~ 116 (305)
T COG1216 78 KYALAK----GDDYVLLLNPDTVVEPDLLEELLKAAEEDPAAG 116 (305)
T ss_pred HHHhcC----CCcEEEEEcCCeeeChhHHHHHHHHHHhCCCCe
Confidence 333221 23 59999999888777 789999988876654
No 325
>cd02514 GT13_GLCNAC-TI GT13_GLCNAC-TI is involved in an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. Alpha-1,3-mannosyl-glycoprotein beta-1,2-N-acetylglucosaminyltransferase (GLCNAC-T I , GNT-I) transfers N-acetyl-D-glucosamine from UDP to high-mannose glycoprotein N-oligosaccharide, an essential step in the synthesis of complex or hybrid-type N-linked oligosaccharides. The enzyme is an integral membrane protein localized to the Golgi apparatus. The catalytic domain is located at the C-terminus. These proteins are members of the glycosy transferase family 13.
Probab=26.93 E-value=5.5e+02 Score=24.67 Aligned_cols=96 Identities=15% Similarity=0.092 Sum_probs=49.5
Q ss_pred ceeeCCcce-eehhhhhhhhhc--C--CcEEEEEeecChHHHHHHHHhhccCCCCcccCCCeEEEec-cCCCCCcCC---
Q 014564 33 AVPIGGAYR-LIDVPMSNCINS--G--INKVYILTQYNSASLNRHLARAYNYGSGVTFGDGCVEVLA-ATQTPGEAG--- 103 (422)
Q Consensus 33 Llpv~gk~p-li~~~l~~l~~~--g--i~~i~Iv~~~~~~~i~~~l~~~~~~~~~~~~~~~~v~i~~-~~~~~~~~~--- 103 (422)
++...|+ | -+.++|+.|.++ + -.+++|......++..+.+... .+. +.++. ........+
T Consensus 5 lv~ayNR-p~~l~r~LesLl~~~p~~~~~~liIs~DG~~~~~~~~v~~~---~~~-------i~~i~~~~~~~~~~~~~~ 73 (334)
T cd02514 5 LVIACNR-PDYLRRMLDSLLSYRPSAEKFPIIVSQDGGYEEVADVAKSF---GDG-------VTHIQHPPISIKNVNPPH 73 (334)
T ss_pred EEEecCC-HHHHHHHHHHHHhccccCCCceEEEEeCCCchHHHHHHHhh---ccc-------cEEEEcccccccccCccc
Confidence 4556788 6 689999999886 3 4566666543334444444321 111 11111 111000000
Q ss_pred -cccccCcHH----HHHHHHHHhcCCCCCccCeEEEEcCCeeeecCh
Q 014564 104 -KRWFQGTAD----AVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDY 145 (422)
Q Consensus 104 -~~~~~g~~~----al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l 145 (422)
-..+.+.+. |+-.+..... .+.++++-.|.+..+++
T Consensus 74 ~~~~y~~ia~hyk~aln~vF~~~~------~~~vIILEDDl~~sPdF 114 (334)
T cd02514 74 KFQGYYRIARHYKWALTQTFNLFG------YSFVIILEDDLDIAPDF 114 (334)
T ss_pred ccchhhHHHHHHHHHHHHHHHhcC------CCEEEEECCCCccCHhH
Confidence 001233444 4444333322 48999999999999984
No 326
>PRK09822 lipopolysaccharide core biosynthesis protein; Provisional
Probab=25.07 E-value=1.3e+02 Score=27.13 Aligned_cols=47 Identities=21% Similarity=0.399 Sum_probs=39.0
Q ss_pred eEEEEcCCCCccCCcccccCcCcceeeCCcceeehhhhhhhhhcCCcEEEEEee
Q 014564 10 AAVILGGGAGTRLYPLTKQRAKPAVPIGGAYRLIDVPMSNCINSGINKVYILTQ 63 (422)
Q Consensus 10 ~aVILAaG~g~Rl~plt~~~pK~Llpv~gk~pli~~~l~~l~~~gi~~i~Iv~~ 63 (422)
.+||++.|..++-.||+.-..|+++-+.|. .+.+...+|+..+-|+.
T Consensus 23 ~v~i~~SG~sak~~Pl~~~~~~~~Ia~NGs-------~~~~~~~~ikP~~Yv~t 69 (269)
T PRK09822 23 DCIIFLSGPTSRKTPLSLLRMKDVIAVNGS-------VQYLLNNNVKPFLYLLT 69 (269)
T ss_pred CEEEEecCcccccCchHHhccCCEEEEccH-------HHHHhhcCCceEEEEee
Confidence 478999999999999999999999999998 45566778877766654
No 327
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=23.46 E-value=5.6e+02 Score=23.23 Aligned_cols=31 Identities=16% Similarity=0.393 Sum_probs=22.5
Q ss_pred hhhhhhhhhcCCcEEEEEeecCh---HHHHHHHH
Q 014564 44 DVPMSNCINSGINKVYILTQYNS---ASLNRHLA 74 (422)
Q Consensus 44 ~~~l~~l~~~gi~~i~Iv~~~~~---~~i~~~l~ 74 (422)
.=.++.|...|+++|.|++.|.. +.+.+++.
T Consensus 109 ~A~~~AL~alg~~RIalvTPY~~~v~~~~~~~l~ 142 (239)
T TIGR02990 109 SAAVDGLAALGVRRISLLTPYTPETSRPMAQYFA 142 (239)
T ss_pred HHHHHHHHHcCCCEEEEECCCcHHHHHHHHHHHH
Confidence 34567778889999999999875 34455554
No 328
>PF00583 Acetyltransf_1: Acetyltransferase (GNAT) family; InterPro: IPR000182 The N-acetyltransferases (NAT) (EC 2.3.1.-) are enzymes that use acetyl coenzyme A (CoA) to transfer an acetyl group to a substrate, a reaction implicated in various functions from bacterial antibiotic resistance to mammalian circadian rhythm and chromatin remodeling. The Gcn5-related N-acetyltransferases (GNAT) catalyze the transfer of the acetyl from the CoA donor to a primary amine of the acceptor. The GNAT proteins share a domain composed of four conserved sequence motifs A-D [, ]. This GNAT domain is named after yeast GCN5 (from General Control Nonrepressed) and related histone acetyltransferases (HATs) like Hat1 and PCAF. HATs acetylate lysine residues of amino terminal histone tails, resulting in transcription activation. Another category of GNAT, the aminoglycoside N-acetyltransferases, confer antibiotic resistance by catalyzing the acetylation of amino groups in aminoglycoside antibiotics []. GNAT proteins can also have anabolic and catabolic functions in both prokaryotes and eukaryotes [, , , , ]. The acetyltransferase/GNAT domain forms a structurally conserved fold of 6 to 7 beta strands (B) and 4 helices (H) in the topology B1-H1-H2-B2-B3-B4-H3-B5-H4-B6, followed by a C-terminal strand which may be from the same monomer or contributed by another [, ]. Motifs D (B2-B3), A (B4-H3) and B (B5-H4) are collectively called the HAT core [, , ], while the N-terminal motif C (B1-H1) is less conserved. Some proteins known to contain a GNAT domain: Yeast GCN5 and Hat1, which are histone acetyltransferases (EC 2.3.1.48). Human PCAF, a histone acetyltransferase. Mammalian serotonin N-acetyltransferase (SNAT) or arylalkylamine NAT (AANAT), which acetylates serotonin into a circadian neurohormone that may participate in light-dark rhythms, and human mood and behavior. Mammalian glucosamine 6-phosphate N-acetyltransferase (GNA1) (EC 2.3.1.4). Escherichia coli rimI and rimJ, which acetylate the N-terminal alanine of ribosomal proteins S18 and S5, respectively (EC 2.3.1.128). Mycobacterium tuberculosis aminoglycoside 2'-N-acetyltransferase (aac), which acetylates the 2' hydroxyl or amino group of a broad spectrum of aminoglycoside antibiotics. Bacillus subtilis bltD and paiA, which acetylate spermine and spermidine. This entry represents the entire GNAT domain.; GO: 0008080 N-acetyltransferase activity, 0008152 metabolic process; PDB: 3T9Y_A 2R7H_B 2OZH_A 1Y9W_B 1VKC_B 2OH1_C 3R9E_B 3R9G_B 3R9F_A 3R96_A ....
Probab=21.90 E-value=87 Score=22.14 Aligned_cols=34 Identities=15% Similarity=0.327 Sum_probs=28.0
Q ss_pred eeehhhhhhhhhcCCcEEEEEeecChHHHHHHHH
Q 014564 41 RLIDVPMSNCINSGINKVYILTQYNSASLNRHLA 74 (422)
Q Consensus 41 pli~~~l~~l~~~gi~~i~Iv~~~~~~~i~~~l~ 74 (422)
.|+++.++.+.+.|++.+.+.+........++..
T Consensus 45 ~L~~~~~~~~~~~g~~~i~~~~~~~n~~~~~~~~ 78 (83)
T PF00583_consen 45 KLLQAAEEWARKRGIKRIYLDVSPDNPAARRFYE 78 (83)
T ss_dssp HHHHHHHHHHHHTTESEEEEEEETTGHHHHHHHH
T ss_pred hhhhhhhhhHHhcCccEEEEEEeCCCHHHHHHHH
Confidence 7999999999999999999999877665555554
No 329
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=21.74 E-value=3.1e+02 Score=27.81 Aligned_cols=45 Identities=16% Similarity=0.158 Sum_probs=27.5
Q ss_pred CcHHHHHHHHHHhcCCCCCccCeEEEEcCCeeeecChHHHHHHHHHcCCcEEE
Q 014564 109 GTADAVRQFHWLFEDPRNKVIEDVLILSGDHLYRMDYMDFVQNHRQSGADITI 161 (422)
Q Consensus 109 g~~~al~~~~~~l~~~~~~~~~~~lv~~gD~i~~~~l~~ll~~~~~~~~~~tl 161 (422)
|.+.||..+..+ . +..++++-||.-+-.+..++-- +.+.+-++.+
T Consensus 435 G~Gfalaaa~~~-P------~~~V~~veGDsaFGfSaME~ET-~vR~~Lpvv~ 479 (571)
T KOG1185|consen 435 GLGFALAAALAA-P------DRKVVCVEGDSAFGFSAMELET-FVRYKLPVVI 479 (571)
T ss_pred chhHHHHHHhhC-C------CCeEEEEecCcccCcchhhHHH-HHHhcCCeEE
Confidence 555666665543 2 4899999999977777555433 3333434433
Done!