Query 014568
Match_columns 422
No_of_seqs 165 out of 314
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 06:24:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014568.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014568hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2754 Oligosaccharyltransfer 100.0 8E-132 2E-136 965.6 37.2 405 13-422 11-430 (443)
2 PF03345 DDOST_48kD: Oligosacc 100.0 1E-128 2E-133 988.7 41.9 387 32-422 1-411 (423)
3 TIGR03521 GldG gliding-associa 99.8 2.8E-17 6E-22 175.9 18.5 245 27-282 180-505 (552)
4 KOG3861 Sensory cilia assembly 99.5 4.3E-13 9.3E-18 130.3 12.8 171 78-274 52-243 (438)
5 PF09822 ABC_transp_aux: ABC-t 99.1 3.3E-10 7.2E-15 110.8 11.0 105 27-144 143-271 (271)
6 COG3225 GldG ABC-type uncharac 96.8 0.014 3E-07 61.4 12.3 51 238-288 433-489 (538)
7 PF14258 DUF4350: Domain of un 96.5 0.011 2.3E-07 46.0 6.8 65 43-115 5-70 (70)
8 PF09960 DUF2194: Uncharacteri 95.4 0.053 1.2E-06 58.9 8.4 96 30-137 54-155 (585)
9 cd03142 GATase1_ThuA Type 1 gl 94.4 0.12 2.7E-06 49.3 7.1 73 43-116 23-96 (215)
10 PF01835 A2M_N: MG2 domain; I 94.2 0.81 1.8E-05 37.5 10.8 74 292-368 7-87 (99)
11 KOG4266 Subtilisin kexin isozy 93.0 1.2 2.7E-05 48.2 12.1 96 43-148 646-771 (1033)
12 PF06283 ThuA: Trehalose utili 92.8 0.39 8.4E-06 45.3 7.5 204 31-270 1-216 (217)
13 cd03143 A4_beta-galactosidase_ 92.6 0.34 7.5E-06 43.0 6.5 60 43-113 26-85 (154)
14 PF08532 Glyco_hydro_42M: Beta 92.2 0.23 5.1E-06 46.7 5.2 62 45-117 32-93 (207)
15 PF07090 DUF1355: Protein of u 87.2 0.58 1.3E-05 43.4 3.3 72 47-119 31-112 (177)
16 PRK05568 flavodoxin; Provision 86.1 12 0.00025 32.5 10.9 102 30-137 2-116 (142)
17 PF00630 Filamin: Filamin/ABP2 85.8 2.6 5.7E-05 34.2 6.3 68 297-368 18-92 (101)
18 COG5426 Uncharacterized membra 83.2 1.9 4.1E-05 40.5 4.6 71 47-117 36-119 (254)
19 PRK05569 flavodoxin; Provision 82.8 16 0.00034 31.7 10.2 103 30-136 2-116 (141)
20 PF10634 Iron_transport: Fe2+ 81.2 5 0.00011 36.2 6.5 69 298-369 39-119 (151)
21 TIGR01753 flav_short flavodoxi 79.3 25 0.00054 29.9 10.3 102 32-137 1-116 (140)
22 PF13115 YtkA: YtkA-like 79.3 10 0.00022 30.1 7.2 62 297-364 18-85 (86)
23 PF13380 CoA_binding_2: CoA bi 76.5 27 0.00059 29.7 9.5 82 47-135 18-106 (116)
24 PRK06703 flavodoxin; Provision 75.5 30 0.00065 30.4 9.8 102 31-137 3-119 (151)
25 cd03132 GATase1_catalase Type 75.2 31 0.00068 29.8 9.8 105 29-140 1-120 (142)
26 PRK06756 flavodoxin; Provision 73.8 36 0.00078 29.7 9.9 102 30-137 2-120 (148)
27 cd01653 GATase1 Type 1 glutami 71.6 20 0.00044 27.6 7.1 79 33-112 2-83 (115)
28 cd03128 GAT_1 Type 1 glutamine 71.3 24 0.00052 25.8 7.2 78 34-112 3-83 (92)
29 smart00557 IG_FLMN Filamin-typ 69.8 26 0.00056 28.4 7.5 63 297-368 15-78 (93)
30 cd05879 Ig_P0 Immunoglobulin ( 68.8 8.5 0.00018 33.0 4.5 21 338-358 86-107 (116)
31 PRK11780 isoprenoid biosynthes 67.8 34 0.00073 32.7 8.8 37 30-66 2-43 (217)
32 TIGR01755 flav_wrbA NAD(P)H:qu 67.8 44 0.00096 31.1 9.5 103 31-137 2-142 (197)
33 PF13709 DUF4159: Domain of un 67.3 18 0.00039 34.3 6.8 84 44-130 20-108 (207)
34 PRK09271 flavodoxin; Provision 66.8 45 0.00097 29.8 9.1 85 31-116 2-93 (160)
35 COG4635 HemG Flavodoxin [Energ 64.3 10 0.00022 34.7 4.2 68 31-107 2-72 (175)
36 cd03134 GATase1_PfpI_like A ty 61.7 44 0.00095 29.5 8.0 96 31-132 1-112 (165)
37 PRK06490 glutamine amidotransf 60.1 78 0.0017 30.5 9.9 99 27-135 5-108 (239)
38 PF03358 FMN_red: NADPH-depend 59.3 42 0.00091 29.2 7.3 112 31-144 2-148 (152)
39 PRK07053 glutamine amidotransf 58.6 64 0.0014 31.0 9.0 97 30-136 3-106 (234)
40 PRK03767 NAD(P)H:quinone oxido 57.4 91 0.002 28.9 9.6 103 31-137 3-143 (200)
41 PRK07308 flavodoxin; Validated 56.7 1.2E+02 0.0027 26.3 9.9 102 31-137 3-119 (146)
42 cd03147 GATase1_Ydr533c_like T 56.6 52 0.0011 31.6 8.0 73 43-116 25-134 (231)
43 PF10354 DUF2431: Domain of un 53.7 92 0.002 28.4 8.7 101 36-137 29-150 (166)
44 TIGR00566 trpG_papA glutamine 53.3 53 0.0011 30.3 7.2 90 33-135 2-94 (188)
45 PF06051 DUF928: Domain of Unk 52.8 26 0.00056 32.7 5.0 41 316-365 41-81 (189)
46 PF08468 MTS_N: Methyltransfer 50.1 5.2 0.00011 36.2 -0.1 55 76-131 67-122 (155)
47 PRK06774 para-aminobenzoate sy 49.5 63 0.0014 29.7 7.1 92 33-136 2-95 (191)
48 TIGR01382 PfpI intracellular p 48.6 1.9E+02 0.0041 25.4 10.1 84 31-115 1-98 (166)
49 cd08374 C2F_Ferlin C2 domain s 48.1 30 0.00064 30.5 4.4 39 329-367 23-63 (133)
50 PRK07649 para-aminobenzoate/an 47.4 73 0.0016 29.6 7.2 94 33-137 2-96 (195)
51 CHL00101 trpG anthranilate syn 47.3 70 0.0015 29.5 7.0 93 33-136 2-95 (190)
52 PRK00170 azoreductase; Reviewe 47.1 1.7E+02 0.0036 26.7 9.6 102 31-136 3-170 (201)
53 PLN02931 nucleoside diphosphat 47.1 43 0.00093 31.1 5.5 102 11-127 8-116 (177)
54 COG3019 Predicted metal-bindin 46.5 1.4E+02 0.0029 26.9 8.1 84 28-117 24-112 (149)
55 cd03169 GATase1_PfpI_1 Type 1 46.5 1.2E+02 0.0025 27.4 8.3 36 31-66 1-36 (180)
56 PRK04155 chaperone protein Hch 46.3 94 0.002 31.0 8.1 38 29-66 49-100 (287)
57 TIGR01754 flav_RNR ribonucleot 45.8 2E+02 0.0043 24.8 9.8 96 31-131 2-111 (140)
58 PF03698 UPF0180: Uncharacteri 45.6 33 0.00072 27.7 3.9 40 42-90 7-47 (80)
59 cd02071 MM_CoA_mut_B12_BD meth 45.5 45 0.00097 28.4 5.1 83 48-133 19-104 (122)
60 PF13344 Hydrolase_6: Haloacid 44.7 99 0.0022 25.5 6.9 70 28-133 29-101 (101)
61 PF05753 TRAP_beta: Translocon 44.6 2E+02 0.0043 26.7 9.5 113 295-419 46-169 (181)
62 PRK11574 oxidative-stress-resi 44.1 1.3E+02 0.0027 27.5 8.3 36 29-64 2-37 (196)
63 TIGR00537 hemK_rel_arch HemK-r 43.2 1.4E+02 0.003 26.8 8.3 37 99-135 124-161 (179)
64 PRK10569 NAD(P)H-dependent FMN 43.0 1.6E+02 0.0034 27.3 8.7 113 31-145 2-142 (191)
65 PF03633 Glyco_hydro_65C: Glyc 42.8 23 0.00051 25.7 2.5 34 352-385 2-35 (54)
66 COG0512 PabA Anthranilate/para 42.5 83 0.0018 29.6 6.6 92 32-136 3-97 (191)
67 PRK11249 katE hydroperoxidase 41.8 1.4E+02 0.003 34.0 9.3 106 26-137 594-716 (752)
68 PRK05452 anaerobic nitric oxid 41.7 2.2E+02 0.0048 30.4 10.7 106 28-137 250-370 (479)
69 COG2998 TupB ABC-type tungstat 41.2 66 0.0014 31.3 5.8 50 233-282 204-261 (280)
70 PRK06242 flavodoxin; Provision 41.2 2E+02 0.0044 24.8 8.7 58 76-137 41-108 (150)
71 PF00919 UPF0004: Uncharacteri 40.8 62 0.0014 26.8 5.0 59 44-115 15-76 (98)
72 PRK06934 flavodoxin; Provision 40.6 1.8E+02 0.0039 27.9 8.8 52 76-131 127-185 (221)
73 PLN02335 anthranilate synthase 39.8 72 0.0016 30.4 6.0 62 25-90 13-74 (222)
74 PRK08007 para-aminobenzoate sy 39.7 1E+02 0.0023 28.3 6.9 93 33-136 2-95 (187)
75 PRK11070 ssDNA exonuclease Rec 39.1 4.4E+02 0.0096 29.0 12.6 52 90-149 111-163 (575)
76 PRK11921 metallo-beta-lactamas 38.9 1.9E+02 0.0041 29.8 9.4 108 28-137 246-366 (394)
77 PRK08857 para-aminobenzoate sy 38.8 1.2E+02 0.0027 27.8 7.3 93 33-136 2-95 (193)
78 PHA02909 hypothetical protein; 38.6 9.6 0.00021 28.7 -0.2 23 398-420 24-47 (72)
79 PRK13527 glutamine amidotransf 38.5 57 0.0012 30.3 5.0 76 31-112 2-81 (200)
80 cd01750 GATase1_CobQ Type 1 gl 38.1 87 0.0019 29.0 6.2 61 42-112 9-76 (194)
81 TIGR03567 FMN_reduc_SsuE FMN r 37.6 3E+02 0.0066 24.6 10.2 90 47-137 21-134 (171)
82 TIGR01465 cobM_cbiF precorrin- 37.3 1.5E+02 0.0033 27.7 7.8 102 29-133 71-180 (229)
83 PF09825 BPL_N: Biotin-protein 37.0 79 0.0017 32.7 6.1 156 31-201 2-179 (367)
84 cd02067 B12-binding B12 bindin 36.9 82 0.0018 26.3 5.3 83 47-133 18-104 (119)
85 PRK09489 rsmC 16S ribosomal RN 36.1 79 0.0017 32.2 6.0 54 77-131 75-129 (342)
86 cd01741 GATase1_1 Subgroup of 35.0 2.2E+02 0.0048 25.7 8.3 77 31-112 1-85 (188)
87 PRK06895 putative anthranilate 34.4 85 0.0018 28.8 5.4 51 33-89 4-54 (190)
88 PRK03094 hypothetical protein; 34.2 64 0.0014 26.1 3.9 40 42-90 7-47 (80)
89 cd02858 Esterase_N_term Estera 34.0 74 0.0016 25.4 4.3 45 316-364 13-58 (85)
90 PRK00107 gidB 16S rRNA methylt 33.6 1.2E+02 0.0026 28.1 6.2 97 31-137 70-167 (187)
91 PF11896 DUF3416: Domain of un 33.3 51 0.0011 30.8 3.7 65 295-368 22-90 (187)
92 TIGR00640 acid_CoA_mut_C methy 33.2 88 0.0019 27.4 5.0 83 48-133 22-107 (132)
93 PF02310 B12-binding: B12 bind 32.8 1.3E+02 0.0029 24.8 6.0 85 46-133 18-106 (121)
94 cd06167 LabA_like LabA_like pr 32.6 1.5E+02 0.0033 25.5 6.5 79 43-127 52-143 (149)
95 PRK01372 ddl D-alanine--D-alan 32.5 2.7E+02 0.006 27.0 9.1 89 46-145 26-121 (304)
96 PHA03392 egt ecdysteroid UDP-g 32.5 46 0.001 35.8 3.8 38 28-65 19-58 (507)
97 COG0426 FpaA Uncharacterized f 32.3 3.3E+02 0.0073 28.5 9.7 105 31-137 248-363 (388)
98 TIGR02336 1,3-beta-galactosyl- 32.3 1.1E+02 0.0023 34.4 6.3 88 45-137 470-568 (719)
99 COG0626 MetC Cystathionine bet 31.2 1.4E+02 0.0031 31.2 6.9 89 27-120 100-189 (396)
100 cd02861 E_set_proteins_like E 30.7 53 0.0011 25.9 2.9 28 338-365 29-56 (82)
101 COG1744 Med Uncharacterized AB 30.4 6E+02 0.013 25.9 11.3 44 97-145 86-129 (345)
102 PRK04165 acetyl-CoA decarbonyl 30.3 1.2E+02 0.0025 32.4 6.2 82 83-165 264-346 (450)
103 PF15260 FAM219A: Protein fami 29.8 37 0.0008 29.5 2.0 46 26-72 43-104 (125)
104 PRK07765 para-aminobenzoate sy 29.7 2.3E+02 0.005 26.7 7.6 84 47-136 15-99 (214)
105 cd03135 GATase1_DJ-1 Type 1 gl 29.6 2E+02 0.0042 25.0 6.8 55 34-88 3-70 (163)
106 PRK08811 uroporphyrinogen-III 29.4 2.4E+02 0.0052 27.5 8.0 63 23-89 12-80 (266)
107 PF02922 CBM_48: Carbohydrate- 29.3 1.1E+02 0.0025 23.6 4.7 53 315-368 17-74 (85)
108 PLN02625 uroporphyrin-III C-me 29.2 2.5E+02 0.0054 27.3 8.0 117 28-148 91-215 (263)
109 TIGR01680 Veg_Stor_Prot vegeta 29.1 1.7E+02 0.0037 29.2 6.7 71 47-117 152-230 (275)
110 PRK09739 hypothetical protein; 28.9 2.4E+02 0.0052 25.9 7.5 36 30-65 4-43 (199)
111 TIGR01467 cobI_cbiL precorrin- 28.7 2.9E+02 0.0064 25.9 8.2 97 28-132 89-191 (230)
112 PF04244 DPRP: Deoxyribodipyri 28.2 1.1E+02 0.0024 29.4 5.1 39 28-66 20-72 (224)
113 COG3470 Tpd Uncharacterized pr 28.0 76 0.0016 29.0 3.7 22 299-320 64-92 (179)
114 PF11869 DUF3389: Protein of u 27.4 71 0.0015 25.5 3.0 30 104-134 37-74 (75)
115 cd02072 Glm_B12_BD B12 binding 27.4 2.1E+02 0.0045 25.1 6.3 87 48-137 19-116 (128)
116 PRK11104 hemG protoporphyrinog 27.3 1.5E+02 0.0034 27.0 5.8 76 31-115 2-85 (177)
117 PF12724 Flavodoxin_5: Flavodo 27.1 2.5E+02 0.0053 24.4 6.9 53 33-90 1-55 (143)
118 cd04413 NDPk_I Nucleoside diph 27.1 2.6E+02 0.0057 24.1 7.0 83 30-127 1-87 (130)
119 PRK09754 phenylpropionate diox 27.1 1.9E+02 0.004 29.6 7.0 58 76-133 98-169 (396)
120 PRK02261 methylaspartate mutas 27.1 3.1E+02 0.0068 24.0 7.5 84 47-133 22-114 (137)
121 COG2813 RsmC 16S RNA G1207 met 26.7 1.7E+02 0.0038 29.5 6.4 78 30-117 182-268 (300)
122 PRK14543 nucleoside diphosphat 26.5 2E+02 0.0044 26.5 6.3 91 28-127 4-97 (169)
123 cd03144 GATase1_ScBLP_like Typ 26.4 53 0.0011 28.3 2.4 79 32-117 2-87 (114)
124 TIGR00768 rimK_fam alpha-L-glu 26.3 2.2E+02 0.0047 27.0 7.0 96 32-136 2-105 (277)
125 TIGR00288 conserved hypothetic 25.7 78 0.0017 28.9 3.5 74 47-128 70-150 (160)
126 PF15020 CATSPERD: Cation chan 25.6 1.4E+02 0.003 33.8 5.8 41 350-392 643-683 (733)
127 PRK05670 anthranilate synthase 25.2 2.6E+02 0.0056 25.5 7.0 93 33-136 2-95 (189)
128 TIGR01675 plant-AP plant acid 25.1 2.3E+02 0.0049 27.4 6.7 69 48-117 128-204 (229)
129 TIGR01815 TrpE-clade3 anthrani 25.1 4E+02 0.0087 30.2 9.6 90 30-131 516-606 (717)
130 TIGR00138 gidB 16S rRNA methyl 25.1 1.9E+02 0.0041 26.4 6.0 95 33-137 69-167 (181)
131 PTZ00093 nucleoside diphosphat 25.0 2.8E+02 0.006 24.8 6.9 84 29-127 2-89 (149)
132 PF10611 DUF2469: Protein of u 24.9 53 0.0011 27.3 1.9 44 355-400 23-67 (101)
133 PF00781 DAGK_cat: Diacylglyce 24.8 2.2E+02 0.0047 24.2 6.0 97 31-137 1-107 (130)
134 COG4567 Response regulator con 24.8 50 0.0011 30.2 2.0 52 29-82 8-59 (182)
135 PRK06015 keto-hydroxyglutarate 24.6 3.7E+02 0.008 25.4 7.9 100 29-137 3-103 (201)
136 PRK01077 cobyrinic acid a,c-di 24.5 3.1E+02 0.0068 28.9 8.3 75 30-112 246-326 (451)
137 COG0716 FldA Flavodoxins [Ener 24.5 2.4E+02 0.0052 24.7 6.4 74 30-110 2-77 (151)
138 PF15284 PAGK: Phage-encoded v 24.4 52 0.0011 25.2 1.7 30 1-30 1-32 (61)
139 PF00117 GATase: Glutamine ami 24.3 1.3E+02 0.0028 27.2 4.8 85 46-137 11-96 (192)
140 KOG4434 Molecular chaperone SE 24.3 70 0.0015 33.1 3.1 77 316-396 414-498 (520)
141 cd03141 GATase1_Hsp31_like Typ 24.2 3.1E+02 0.0067 25.8 7.5 25 42-66 22-46 (221)
142 PF05175 MTS: Methyltransferas 24.1 2.3E+02 0.005 25.3 6.3 81 30-119 55-144 (170)
143 TIGR01737 FGAM_synth_I phospho 24.1 4.4E+02 0.0096 24.9 8.5 58 48-112 17-82 (227)
144 PRK08250 glutamine amidotransf 24.0 4.3E+02 0.0093 25.2 8.5 97 31-136 2-107 (235)
145 PF09419 PGP_phosphatase: Mito 24.0 2.3E+02 0.005 26.0 6.2 67 51-134 35-109 (168)
146 smart00562 NDK These are enzym 23.9 3.3E+02 0.0072 23.5 7.1 84 30-127 1-87 (135)
147 PF13670 PepSY_2: Peptidase pr 23.9 1.2E+02 0.0026 23.9 3.9 21 44-64 30-50 (83)
148 COG4090 Uncharacterized protei 23.7 1E+02 0.0023 27.3 3.7 31 79-111 86-117 (154)
149 PF10087 DUF2325: Uncharacteri 23.7 3.9E+02 0.0085 21.5 8.0 82 44-129 11-95 (97)
150 TIGR00644 recJ single-stranded 23.6 7E+02 0.015 27.0 10.9 90 28-148 53-146 (539)
151 COG2247 LytB Putative cell wal 23.3 5.2E+02 0.011 26.4 8.9 46 95-140 62-109 (337)
152 PRK10530 pyridoxal phosphate ( 23.3 1.9E+02 0.0041 27.4 5.9 51 92-145 21-74 (272)
153 cd04418 NDPk5 Nucleoside dipho 23.0 3.5E+02 0.0077 23.5 7.0 83 30-127 1-85 (132)
154 PF05751 FixH: FixH; InterPro 22.9 1.6E+02 0.0036 25.4 5.0 41 336-377 103-143 (146)
155 CHL00197 carA carbamoyl-phosph 22.8 3.1E+02 0.0066 28.6 7.6 91 30-134 192-284 (382)
156 cd00595 NDPk Nucleoside diphos 22.7 3.3E+02 0.0072 23.5 6.8 84 30-127 1-87 (133)
157 PF13778 DUF4174: Domain of un 22.6 3.1E+02 0.0067 23.4 6.4 34 29-62 9-42 (118)
158 TIGR00379 cobB cobyrinic acid 22.3 1.5E+02 0.0033 31.3 5.4 75 30-112 245-325 (449)
159 PHA02692 hypothetical protein; 22.2 28 0.00061 27.3 -0.1 39 382-420 27-66 (70)
160 smart00675 DM11 Domains in hyp 22.1 92 0.002 28.6 3.2 22 298-319 58-79 (164)
161 PRK15473 cbiF cobalt-precorrin 21.9 3.9E+02 0.0084 25.8 7.8 100 29-133 80-189 (257)
162 cd01743 GATase1_Anthranilate_S 21.8 3E+02 0.0066 24.8 6.7 79 47-133 13-91 (184)
163 cd02860 Pullulanase_N_term Pul 21.8 2.5E+02 0.0054 22.7 5.6 51 315-367 14-69 (100)
164 TIGR01451 B_ant_repeat conserv 21.4 1.2E+02 0.0026 22.1 3.1 31 292-327 4-34 (53)
165 cd01744 GATase1_CPSase Small c 21.3 2.8E+02 0.0061 25.0 6.4 78 47-132 11-88 (178)
166 PRK15481 transcriptional regul 21.0 3.5E+02 0.0076 27.9 7.7 22 43-64 173-194 (431)
167 TIGR00888 guaA_Nterm GMP synth 20.7 4.3E+02 0.0093 23.9 7.5 77 47-133 13-90 (188)
168 PRK08114 cystathionine beta-ly 20.6 2.4E+02 0.0053 29.3 6.4 89 27-119 99-188 (395)
169 PRK14541 nucleoside diphosphat 20.5 3.8E+02 0.0082 23.7 6.7 84 30-127 2-88 (140)
170 cd03140 GATase1_PfpI_3 Type 1 20.4 4E+02 0.0087 23.6 7.1 80 34-115 4-97 (170)
No 1
>KOG2754 consensus Oligosaccharyltransferase, beta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.7e-132 Score=965.64 Aligned_cols=405 Identities=56% Similarity=0.953 Sum_probs=386.3
Q ss_pred HHhhhhccccccCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCC
Q 014568 13 SLIPLFSVAFSPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF 92 (422)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~ 92 (422)
+||++..++.+ .+.|+|||+|+..++++||.|+++|++|||+++++.++|+++.|++||+++|||||||+|+.+.|
T Consensus 11 llla~~~~v~~----~~~RtLVL~d~~~~~ethSvFl~sLkdRgf~L~~~~a~dssl~L~~Ygq~LyDnlIifap~~e~f 86 (443)
T KOG2754|consen 11 LLLALIGFVLS----QAARTLVLLDNLAVKETHSVFLKSLKDRGFKLTYKLADDSSLALFKYGQRLYDNLIIFAPSVENF 86 (443)
T ss_pred HHHHHHHHHhc----ccCcEEEEeeccccccchhhhhhhHHhcCceeEEEecCCchhHHHHhhhHhhccEEEecCchhhc
Confidence 55666664443 34599999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceec
Q 014568 93 GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVIL 172 (422)
Q Consensus 93 ~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv~~~~i~~~~i~ 172 (422)
+++++++.|.+|+|+|||||+++++..++.||+|++||||+++++ |+.||||++++..++.++|+++.+++.+.++.|+
T Consensus 87 gg~is~k~l~~Fvd~gGnvlv~ass~~~d~iRe~~~E~g~~~~e~-~~~ViDH~~~d~s~~sgdhtli~~~nl~~~~~Iv 165 (443)
T KOG2754|consen 87 GGSISVKSLAKFVDSGGNVLVAASSAIGDAIREFASECGIEFDEE-GAAVIDHHNYDVSSDSGDHTLIVADNLLKAPYIV 165 (443)
T ss_pred CCCCCHHHHHHHHhCCCcEEEEcCCcccHHHHHHHHHhCcccCcc-cceeeeeeeccccCCCCCeEEEeecccccCceee
Confidence 999999999999999999999999999999999999999999999 8999999999977788899999998888889999
Q ss_pred cCCcccCceeeeceeEEeecCCceeEeeeEeCCceeecCCCCCCCCCCCCCCCceeEEEEEEecCCcEEEEEeccccccC
Q 014568 173 GSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSN 252 (422)
Q Consensus 173 ~~~~~~~~vl~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRvvvvGS~d~fSd 252 (422)
+......|++|+|+||.++|+||++.|||+|++|||+++++.+....||++|+|+.||+++|+||||||+|+||.|||||
T Consensus 166 g~~~~~~piLfrgig~~l~~~n~lvl~IL~a~~TsYs~np~a~~s~np~a~Gs~~~LV~~lQarNNARvv~sGS~d~fsd 245 (443)
T KOG2754|consen 166 GKSKRAAPILFRGIGHVLGPTNPLVLPILRASPTSYSYNPEAKVSCNPWAAGSQTLLVSGLQARNNARVVFSGSSDFFSD 245 (443)
T ss_pred ccccccCCeeeecchhhcCCCCcceeeeecCCCcceecCcccccccCccccccceEEEEeeeccCCceEEEeccHHhhhc
Confidence 87665689999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred c--------------cCccchHHHHHHHhhcccccCceEEEeeeEEeecCCCCCCc-ceEeCCceEEEEEEEEEeCCeee
Q 014568 253 R--------------HEKSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESDEPA-IYRINDDLEYSVEIYEWSGTSWE 317 (422)
Q Consensus 253 ~--------------~~~~~N~~f~~~l~~W~f~e~gvlr~~~~~H~~~~~~~~~~-~Y~i~d~v~y~i~i~e~~~~~w~ 317 (422)
+ ..++||++|+.+|.+|+|+|+||||+.++.|||++|+.+|. .|||||+++|||+|+||++|+|+
T Consensus 246 ~~~~~~~~~~~~~~~~~~sgN~~fA~~lskWvF~E~gvLr~~~~~hhkvget~~p~e~Y~IkD~viySI~i~el~~g~w~ 325 (443)
T KOG2754|consen 246 EFFSSQVQSASSSVQYEQSGNQEFATELSKWVFKEKGVLRVGNVVHHKVGETLPPEEAYRIKDDVIYSIGISELSGGEWV 325 (443)
T ss_pred ccccccccccCCcchhhccccHHHHHHHHHhhhcccceEEeeeceecccCCcCCCccceeecccEEEEEEEEEecCCeee
Confidence 9 34678999999999999999999999999999999998666 99999999999999999999999
Q ss_pred ecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccccccCC
Q 014568 318 PYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYERFLPAA 397 (422)
Q Consensus 318 P~~~~d~QlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R~i~~a 397 (422)
||++|||||||+|+|||+|++|+|.+.|.|++.||+||+||||||+|||||+|||+|.+++|++||||+||||||||++|
T Consensus 326 P~~adDvQlEfv~iDPyvR~tL~~~~~g~~~~~FklPDvyGvFqFkvdY~r~GyT~l~~~~qvsvRpl~h~eYeRfIpsA 405 (443)
T KOG2754|consen 326 PFVADDVQLEFVRIDPYVRTTLKPSGQGYYSAEFKLPDVYGVFQFKVDYRRLGYTHLYDKTQVSVRPLAHTEYERFIPSA 405 (443)
T ss_pred eecccceEEEEEEeCchheeEEecCCCceEEEEEecCCeeceEEEEEecccccceeeeccceEeeeeccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHHHHHhhheeeeeccC
Q 014568 398 YPYYGSAFSMMAGFFIFTIVHLYSK 422 (422)
Q Consensus 398 ~pyy~s~~~~~~~~~~F~~~~l~~~ 422 (422)
||||+|||+||+|||+||++||+||
T Consensus 406 ypYyas~fs~m~g~~~Fs~vfL~~k 430 (443)
T KOG2754|consen 406 YPYYASCFSMMAGFFLFSFVFLYHK 430 (443)
T ss_pred chHHHHHHHHHHHHheeeEEEEEec
Confidence 9999999999999999999999987
No 2
>PF03345 DDOST_48kD: Oligosaccharyltransferase 48 kDa subunit beta; InterPro: IPR005013 During N-linked glycosylation of proteins, oligosaccharide chains are assembled on the carrier molecule dolichyl pyrophosphate in the following order: 2 molecules of N-acetylglucosamine (GlcNAc), 9 molecules of mannose, and 3 molecules of glucose. These 14-residue oligosaccharide cores are then transferred to asparagine residues on nascent polypeptide chains in the endoplasmic reticulum (ER). As proteins progress through the Golgi apparatus, the oligosaccharide cores are modified by trimming and extension to generate a diverse array of glycosylated proteins [, ]. The oligosaccharyl transferase complex (OST complex) 2.4.1.119 from EC transfers 14-sugar branched oligosaccharides from dolichyl pyrophosphate to asparagine residues []. The complex contains nine protein subunits: Ost1p, Ost2p, Ost3p, Ost4p, Ost5p, Ost6p, Stt3p, Swp1p, and Wbp1p, all of which are integral membrane proteins of the ER. The OST complex interacts with the Sec61p pore complex [] involved in protein import into the ER. This entry represents subunits OST3 and OST6. OST3 is homologous to OST6 [], and several lines of evidence indicate that they are alternative members of the OST complex. Disruption of both OST3 and OST6 causes severe underglycosylation of soluble and membrane-bound glycoproteins and a defect in the assembly of the complex. Hence, the function of these genes seems to be essential for recruiting a fully active complex necessary for efficient N-glycosylation []. This entry also includes the magnesium transporter protein 1, also known as OST3 homologue B, which might be involved in N-glycosylation through its association with the oligosaccharyl transferase (OST) complex. Wbp1p is the beta subunit of the OST complex, one of the original six subunits purified []. Wbp1 is essential [, ], but conditional mutants have decreased transferase activity [, ]. Wbp1p is homologous to mammalian OST48 [].; GO: 0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity, 0018279 protein N-linked glycosylation via asparagine, 0005789 endoplasmic reticulum membrane
Probab=100.00 E-value=9.6e-129 Score=988.72 Aligned_cols=387 Identities=52% Similarity=0.937 Sum_probs=367.0
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcE
Q 014568 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (422)
Q Consensus 32 ~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNl 111 (422)
||||+|+..++.+||+|+++|++|||+|+++.++|+++.|+++|+++|||||||||+.+.|+++++++.|++|+++||||
T Consensus 1 ~LVllD~~~~~~~yS~Ff~~L~~rg~~l~~~~~~d~~l~L~~~ge~~YD~LIif~~~~k~~g~~ls~~~ll~Fvd~GgNi 80 (423)
T PF03345_consen 1 TLVLLDNRAIKETYSTFFNSLKERGYELTFKSADDESLSLFKYGERLYDHLIIFPPSVKEFGGSLSPKTLLDFVDNGGNI 80 (423)
T ss_pred CEEEecCccchhhHHHHHHHHHhCCCEEEEecCCCCCcchhhCChhhcceEEEeCCcccccCCCCCHHHHHHHHhCCCcE
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCC-CcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe--eccccccceeccCCcccCceeeeceeE
Q 014568 112 IVAADSN-ASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA--SDDFIKADVILGSKKIEAPVLFQGIGH 188 (422)
Q Consensus 112 Li~~~~~-~~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv--~~~~i~~~~i~~~~~~~~~vl~~g~g~ 188 (422)
|+++++. .++.+|.||+||||+++|+ |+.|+|||+++..++.++|+.++ .++.+.+..+.+... .|++|+|+||
T Consensus 81 lv~~s~~~~~~~ir~~~~E~gi~~~~~-~~~viDHf~~~~~~~~~~h~~i~~~~~~~i~~~~~~~~~~--~pilf~G~g~ 157 (423)
T PF03345_consen 81 LVAGSSDAIPDSIREFANELGIEFDPK-GSKVIDHFNYDSSSDSEDHTVIVLSSNNLIKSSVIVGFKT--KPILFRGVGH 157 (423)
T ss_pred EEEeCCCcCcHHHHHHHHHCCeEECCC-CCEEEcCCCCcccccccCcceEEecCCccccCcccccCCC--CcEEEEeEEE
Confidence 9999998 8999999999999999998 99999999999766677888887 456676666664433 6899999999
Q ss_pred EeecCCceeEeeeEeCCceeecCCCCCCCC--CCCCCCCceeEEEEEEecCCcEEEEEeccccccCcc-----------C
Q 014568 189 SLNPANSLVLKVLSASSSAYSANPKSKLSN--PPSLTGSAISLVSVVQARNNARILITGSLSMFSNRH-----------E 255 (422)
Q Consensus 189 ~l~~~n~~~~pIL~a~~tsys~~~~~~~~~--~~~~~G~~~~LvaalQ~~nnaRvvvvGS~d~fSd~~-----------~ 255 (422)
+++ +||+++|||+|++|||+++++++... +||++|+|++||+|+|+|||||++|+||.|||||++ .
T Consensus 158 ~l~-~n~l~~pIL~a~~Tays~~~~~~~~~~~~~~~~G~q~~LVsa~QarNNARv~~~GS~d~fsd~~f~~~v~~~~~~~ 236 (423)
T PF03345_consen 158 LLD-NNPLVFPILRAPSTAYSYDPKEPIEEYDDPWAAGSQISLVSAFQARNNARVVFSGSLDMFSDEFFDSKVQKAGKKS 236 (423)
T ss_pred Eec-CCCceeeeeccCCceeccccccccccccchhhccccceEEEEEecccCcEEEEEecHHHhccHHHhhhhhhccccc
Confidence 999 59999999999999999998876664 499999999999999999999999999999999991 3
Q ss_pred ccchHHHHHHHhhcccccCceEEEeeeEEeecCCCC--CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc
Q 014568 256 KSGNEQFLTEISKWVFHERGHLKAVNVRHHKVGESD--EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP 333 (422)
Q Consensus 256 ~~~N~~f~~~l~~W~f~e~gvlr~~~~~H~~~~~~~--~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldP 333 (422)
+++|++|+++|++|+|||+||||+++++|||+++++ +|.+|||||+|+|+|+|+||++|+|+||++|||||||+||||
T Consensus 237 ~~~N~~f~~~l~~WtF~e~gvLr~~~~~H~~~~~~~~~~p~~Y~I~D~v~ysi~i~e~~~~~WvPf~~dDiQlEf~mLDP 316 (423)
T PF03345_consen 237 KSGNREFAKELSKWTFQEKGVLRVSNVKHHKVGETEYSNPEMYRIKDDVEYSIEISEWNNGKWVPFKADDIQLEFVMLDP 316 (423)
T ss_pred chhHHHHHHHHHHhHHhhcCeEeecceEEEeCCCcCcCCCcceEECCcEEEEEEEEEEeCCeEecCCCCcEEEEEEEcCc
Confidence 789999999999999999999999999999999998 899999999999999999999999999999999999999999
Q ss_pred eEeecccc----CCCceEEEEEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccc--cccCCcchhhHHHHH
Q 014568 334 YVLKTLST----DQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYER--FLPAAYPYYGSAFSM 407 (422)
Q Consensus 334 y~R~~l~~----~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R--~i~~a~pyy~s~~~~ 407 (422)
|+|++|+| .++|+|+++||+|||||||||+|||||+|||+|++++|||||||||||||| ||++|||||+||+||
T Consensus 317 y~R~~L~~~~~~~~~~~Y~~~FklPD~hGVF~F~vdY~R~G~t~l~~~~~v~VRpl~Hdey~Rs~fI~~A~PYyas~~s~ 396 (423)
T PF03345_consen 317 YVRLTLKPSYSTDDNGTYSTTFKLPDVHGVFTFKVDYKRPGYTFLEEKTQVSVRPLAHDEYPRSWFITNAYPYYASAFSM 396 (423)
T ss_pred EEEcccccccccCCCCEEEEEEECCCccceEEEEEEEecCceeeEEEEEEEeccCCccccCccccccccccHHHHHHHHH
Confidence 99999999 789999999999999999999999999999999999999999999999999 899999999999999
Q ss_pred HHHHhhheeeeeccC
Q 014568 408 MAGFFIFTIVHLYSK 422 (422)
Q Consensus 408 ~~~~~~F~~~~l~~~ 422 (422)
|+|||+||++|||++
T Consensus 397 m~gf~lF~~~fL~~~ 411 (423)
T PF03345_consen 397 MIGFFLFVFVFLYHK 411 (423)
T ss_pred HHHHHhheeeEEEec
Confidence 999999999999985
No 3
>TIGR03521 GldG gliding-associated putative ABC transporter substrate-binding component GldG. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldG is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldG abolish the gliding phenotype. GldG, along with GldA and GldF are believed to compose an ABC transporter and are observed as an operon. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.75 E-value=2.8e-17 Score=175.91 Aligned_cols=245 Identities=11% Similarity=0.116 Sum_probs=165.6
Q ss_pred CCCCeEEEEEcCcccccc--hhHHHHHHHhCCceEEEeeCCCCCccccccCc----cccCEEEEeCCCCCCCCCCccHHH
Q 014568 27 PTDRRVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQ----YLYDALVLFCPSVERFGGSIDVAS 100 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~--~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~----~~yd~LVI~~p~~~~~~~~~e~~~ 100 (422)
....+++.++.+|++... ...+.+.|+ ++|++.....+.. ....... .++|.|||..|+.+ |+ +.|..+
T Consensus 180 ~~~~~~V~~l~ghGE~~~~~~~~l~~~L~-~~y~v~~l~l~~~--~~~~~~ip~~l~d~d~LvI~~P~~~-ls-~~e~~~ 254 (552)
T TIGR03521 180 NPREKRIAVLKGNGELADLQIADLVSTLK-EYYFIAPFTLDSV--AANPAKTLADLKKFDLIVIAKPTEA-FS-EREKYI 254 (552)
T ss_pred CccCceEEEEeCCCCCChHHHHHHHHHHH-hcCceeeecchhc--ccCcccccccccCcCEEEEeCCCcc-CC-HHHHHH
Confidence 345788889999988643 468899998 8999976422210 0011112 37899999999988 75 579999
Q ss_pred HHHHHHCCCcEEEEeCCCC------------------cHHHHHHHHHcCceecCCCCeEEEeccCccccCCC---CC---
Q 014568 101 IVDFVDSGHDLIVAADSNA------------------SDLIREVATECGVDFDEDPAAMVIDHINYAVSNFD---GD--- 156 (422)
Q Consensus 101 L~~Fi~~GGNlLi~~~~~~------------------~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~~---~~--- 156 (422)
|.+|+++||++||+++|.. ..++..|++++||.+.++ +|+|.......... ++
T Consensus 255 Ldqfl~~GG~ll~~~dp~~~~~~~~~~~~g~~~~~~~~~~L~~Ll~~~Gi~~~~~---~V~D~~~~~~~~~~g~~g~~~~ 331 (552)
T TIGR03521 255 LDQYIMNGGKALFLVDAVAMEMDSLYNGDGATFALPRDLNLDDLLFKYGIRINPD---LVEDLNSAPIVLATGNQGNNTQ 331 (552)
T ss_pred HHHHHHcCCeEEEEecCcccccccccccCCccccCCCCCCHHHHHHHhCeEeCcC---eEecCcCCceeeecCCcCCcce
Confidence 9999999999999998732 158999999999999997 78995432110000 00
Q ss_pred ---ceEEeec--cccccceeccCCcccCceeeeceeEEeecCCceeEeeeEeCCceeecCCCC-------CCCC--CCCC
Q 014568 157 ---HTLIASD--DFIKADVILGSKKIEAPVLFQGIGHSLNPANSLVLKVLSASSSAYSANPKS-------KLSN--PPSL 222 (422)
Q Consensus 157 ---~~~iv~~--~~i~~~~i~~~~~~~~~vl~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~-------~~~~--~~~~ 222 (422)
++....+ ..-.+++|+.+. ...+++.+.++...+++...+|+|++++.||...... .... +...
T Consensus 332 ~~~~~~~~~p~~~~~~~~piT~~l--~~v~~~~a~~i~~~~~~~~~tpLL~TS~~s~~~~~~~~i~~~~~~~~~dp~~~~ 409 (552)
T TIGR03521 332 YQPLPWPYYPQVYSFNKHPITKNL--DAVKFEFASTIDTLKNGIKKTPLLQTSPYSKIEGTPAQISLSEVTEEPDPESYN 409 (552)
T ss_pred ecccCcccccccccCCCCccccCc--ccEEEeccceeEecCCCeEEEEeEEeChhhhccCCCccccHHHhhcCCChhHcC
Confidence 1111122 111356777442 1234666666665444558999999999998532100 0000 1123
Q ss_pred CCCceeEEEEEEe---------------------cCCcEEEEEeccccccCccC----------------ccchHHHHHH
Q 014568 223 TGSAISLVSVVQA---------------------RNNARILITGSLSMFSNRHE----------------KSGNEQFLTE 265 (422)
Q Consensus 223 ~G~~~~LvaalQ~---------------------~nnaRvvvvGS~d~fSd~~~----------------~~~N~~f~~~ 265 (422)
.| +..|++++++ .+++||+|+||+||++|.+. ..+|.+|+++
T Consensus 410 ~g-~~~la~~l~g~~~s~f~~~~~~~~~~~~~~~~~~~rvvvvgd~d~l~d~~~~~~~~~~~g~~~~~~~~~~N~df~lN 488 (552)
T TIGR03521 410 LG-NLPLAVLLEGSFTSAYKNRILPFEIPFKRDQGKPTKMIVVADGDVIRNQLDNNGKPLELGYDRFTGNLYGNKEFLLN 488 (552)
T ss_pred CC-CeEEEEEEEeccccccCCCCCccccccccccCCCceEEEEechHHhhhhHhhcCCccccccchhccccCccHHHHHH
Confidence 34 6668888874 25789999999999999832 1379999999
Q ss_pred HhhcccccCceEEEeee
Q 014568 266 ISKWVFHERGHLKAVNV 282 (422)
Q Consensus 266 l~~W~f~e~gvlr~~~~ 282 (422)
++.|+.++++.|.+.+-
T Consensus 489 ~vd~L~~~~~li~IR~k 505 (552)
T TIGR03521 489 AVNYLLDDTGLINIRSK 505 (552)
T ss_pred HHHHhcCCchhhhcccc
Confidence 99999999999866543
No 4
>KOG3861 consensus Sensory cilia assembly protein [Extracellular structures]
Probab=99.47 E-value=4.3e-13 Score=130.30 Aligned_cols=171 Identities=17% Similarity=0.264 Sum_probs=120.9
Q ss_pred ccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCC----cHHHHHHHHHcCceecCCCCeEEEeccCccccCC
Q 014568 78 LYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA----SDLIREVATECGVDFDEDPAAMVIDHINYAVSNF 153 (422)
Q Consensus 78 ~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~----~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~ 153 (422)
.--.+|+..|+.+ |+ ..|.+.|+.|++.||.++|+++.+- .++++.+++||||.++.+ + ||...-+.- -
T Consensus 52 ~Vk~~i~agP~~~-Ft-~~Efevlkkyve~GGsl~vllGEGGE~rf~tnvNf~le~YGI~vN~D--t-VvR~vy~Ky-F- 124 (438)
T KOG3861|consen 52 RVKIFILAGPQDR-FT-EDEFEVLKKYVEVGGSLVVLLGEGGEPRFNTNVNFFLEQYGIYVNGD--T-VVRPVYYKY-F- 124 (438)
T ss_pred ceeEEEecCcccc-cc-hhHHHHHHHHHhcCCeEEEEecCCCCccccccHHHHHHHhCeEecCC--c-eeehhhhhc-c-
Confidence 3356777777766 96 6799999999999999998886542 479999999999999997 4 665311110 0
Q ss_pred CCCceEEeeccccccce----------eccCC--cccCc---eeeeceeEEeecCCceeEeeeEeCCceeecCCCCCCCC
Q 014568 154 DGDHTLIASDDFIKADV----------ILGSK--KIEAP---VLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSN 218 (422)
Q Consensus 154 ~~~~~~iv~~~~i~~~~----------i~~~~--~~~~~---vl~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~~~~~ 218 (422)
..+ ..+++++.++.+. ++... ..+.. ++|.|+.+.+ +..+..+|++++++|+.++
T Consensus 125 hPK-EalV~~GVvnr~i~raa~K~v~~~v~~~~~~n~qal~F~YPyGaTL~V---~~panvvLstGsv~fP~nR------ 194 (438)
T KOG3861|consen 125 HPK-EALVGGGVVNRSIWRAALKLVIEKVYYDFSDNKQALHFQYPYGATLNV---SEPANVVLSTGSVVFPFNR------ 194 (438)
T ss_pred ChH-HhhhccceeeHHHHHHHHhhhHHHHHhhcccchheEEEecccCceeec---cccceeEeccCceeccCCC------
Confidence 001 3555555443220 01111 00112 3567777665 4678899999999999875
Q ss_pred CCCCCCCceeEEEEEEec-CCcEEEEEeccccccCc-cCccchHHHHHHHhhcccccC
Q 014568 219 PPSLTGSAISLVSVVQAR-NNARILITGSLSMFSNR-HEKSGNEQFLTEISKWVFHER 274 (422)
Q Consensus 219 ~~~~~G~~~~LvaalQ~~-nnaRvvvvGS~d~fSd~-~~~~~N~~f~~~l~~W~f~e~ 274 (422)
| +++-+.+. +++|++++||+.||+|+ ..+..|.++.+-+++|+....
T Consensus 195 -P--------~~af~~~kN~gGki~vvGS~~mfhD~YldkeeN~kifd~~v~~L~~g~ 243 (438)
T KOG3861|consen 195 -P--------LVAFFTNKNKGGKILVVGSGYMFHDKYLDKEENDKIFDYLVKLLGGGE 243 (438)
T ss_pred -c--------ceeeeeccCcCceEEEeeeeeeechhhccccccchHHHHHHHHhcCCc
Confidence 2 55556655 46899999999999999 578899999999999997754
No 5
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=99.12 E-value=3.3e-10 Score=110.85 Aligned_cols=105 Identities=15% Similarity=0.271 Sum_probs=90.4
Q ss_pred CCCCeEEEEEcCcccc----------cchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCC
Q 014568 27 PTDRRVLVLVDDFAIK----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGS 95 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~----------~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~ 95 (422)
....+++.++.+|++. ..++.|.+.|+++ |+|... +|.... +..+|.|||+.|+.+ |+ .
T Consensus 143 ~~~~~~V~~l~ghge~~~~~~~~~~~~~~~~l~~~L~~~-y~V~~~-------~l~~~~IP~~~d~Lvi~~P~~~-ls-~ 212 (271)
T PF09822_consen 143 SDEKPKVYFLTGHGERGGGSMPNSQSTSYSSLKSLLEKN-YDVEEL-------NLANEEIPDDADVLVIAGPKTD-LS-E 212 (271)
T ss_pred cccCceEEEEccccccccccccccCcchHHHHHHHHHhc-Cceeec-------CCcccccCCCCCEEEEECCCCC-CC-H
Confidence 3468899999999998 8999999999999 999974 444333 378899999999998 75 5
Q ss_pred ccHHHHHHHHHCCCcEEEEeCCCCc-------------HHHHHHHHHcCceecCCCCeEEEe
Q 014568 96 IDVASIVDFVDSGHDLIVAADSNAS-------------DLIREVATECGVDFDEDPAAMVID 144 (422)
Q Consensus 96 ~e~~~L~~Fi~~GGNlLi~~~~~~~-------------~~l~~ll~elGI~~~~~~~~~VvD 144 (422)
.+..+|.+|+++|||+||++++... .+|..||+++||.+.++ +|+|
T Consensus 213 ~e~~~l~~yl~~GG~ll~~~d~~~~~~~~~~~~~~~~~~~L~~lL~~~Gi~~~~~---~V~D 271 (271)
T PF09822_consen 213 EELYALDQYLMNGGKLLILLDPFSVELQGLWAGGAQRDSNLNDLLEEYGIRINPG---LVVD 271 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEECCcccccccccccccccccCHHHHHHHcCCEeCCC---EecC
Confidence 6999999999999999999998642 49999999999999997 6876
No 6
>COG3225 GldG ABC-type uncharacterized transport system involved in gliding motility, auxiliary component [Cell motility and secretion]
Probab=96.83 E-value=0.014 Score=61.39 Aligned_cols=51 Identities=16% Similarity=0.254 Sum_probs=43.3
Q ss_pred CcEEEEEeccccccCc---cCc---cchHHHHHHHhhcccccCceEEEeeeEEeecC
Q 014568 238 NARILITGSLSMFSNR---HEK---SGNEQFLTEISKWVFHERGHLKAVNVRHHKVG 288 (422)
Q Consensus 238 naRvvvvGS~d~fSd~---~~~---~~N~~f~~~l~~W~f~e~gvlr~~~~~H~~~~ 288 (422)
|..+.+++|.+++||. -.+ .+|.+|+.++++|+.+.++.|-+..--|.+..
T Consensus 433 ns~~~lv~ds~~~s~~~~~q~~~v~~~N~~fv~N~~d~l~g~D~fln~~Sr~~~~~p 489 (538)
T COG3225 433 NSPAILVADSDLLSAYMANQSQQVVAGNFEFVTNIFDYLSGGDAFLNSKSRLEVRRP 489 (538)
T ss_pred CCceeecCcccccchhhhhcCCceeeccHHHHHHHHHHHhCCcceEeeecccccccc
Confidence 5669999999999999 233 67999999999999999999988877666554
No 7
>PF14258 DUF4350: Domain of unknown function (DUF4350)
Probab=96.49 E-value=0.011 Score=45.96 Aligned_cols=65 Identities=17% Similarity=0.351 Sum_probs=46.6
Q ss_pred cchhHHHHHHHhCCceEEEe-eCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEe
Q 014568 43 SSHSLYFGSLTSRGFQLEFK-LADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAA 115 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~-~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~ 115 (422)
..+..|.+.|+++|.+++.. .+.+ .| +..-..||+.+|... +....+.+.|.+|+++||+|+|++
T Consensus 5 ~G~~a~~~~L~~~g~~v~~~~~~~~---~l----~~~~~tll~i~~~~~-~~~~~~~~~l~~~v~~G~~lvl~a 70 (70)
T PF14258_consen 5 NGTYALYQLLEEQGVKVERWRKPYE---AL----EADDGTLLVIGPDLR-LSEPEEAEALLEWVEAGNTLVLAA 70 (70)
T ss_pred hHHHHHHHHHHHCCCeeEEecccHH---Hh----CCCCCEEEEEeCCCC-CCchHHHHHHHHHHHcCCEEEEeC
Confidence 34567999999999999853 1111 12 124478888888766 542268899999999999999863
No 8
>PF09960 DUF2194: Uncharacterized protein conserved in bacteria (DUF2194); InterPro: IPR018695 This family of prokaryotic proteins has no known function; however it may be a membrane protein.
Probab=95.40 E-value=0.053 Score=58.94 Aligned_cols=96 Identities=13% Similarity=0.208 Sum_probs=61.0
Q ss_pred CeEEEEEcCcccc--cchhHHHHHHHhC--CceEEEee--CCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHH
Q 014568 30 RRVLVLVDDFAIK--SSHSLYFGSLTSR--GFQLEFKL--ADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (422)
Q Consensus 30 ~r~LVlld~~~~~--~~~S~f~~~L~~r--G~~v~~~~--~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~ 103 (422)
.+.++++|+.++. .-.-+|.+.|+.. +|+.-... .++.... -..|+.+||.-+..+.++ .++|.+
T Consensus 54 ~~l~~l~d~~~~~s~~~~~n~~kil~~~K~~~~~id~~~~~~~~~p~-----l~~Y~~vII~~~~l~~l~----~~~i~~ 124 (585)
T PF09960_consen 54 EKLLILYDSNGELSMDIKENFKKILEYMKIPYDTIDIAEFIKSSIPS-----LSDYRGVIILTTDLDPLG----NEAIMN 124 (585)
T ss_pred ceEEEEECCCChHHHHHHHHHHHHHHHhccccEeeeccccccccCCc-----ccceeEEEEEeccccccC----hHHHHH
Confidence 3455599987652 3334566666543 44432210 1111111 135788999888877674 299999
Q ss_pred HHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 014568 104 FVDSGHDLIVAADSNASDLIREVATECGVDFDED 137 (422)
Q Consensus 104 Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~ 137 (422)
|+++|||++++..+...+.++.+ +||.-..+
T Consensus 125 yV~~GG~vif~~~~~~~~~~~~I---lGI~~~~e 155 (585)
T PF09960_consen 125 YVENGGTVIFATTPEKTPWLNFI---LGIRSVGE 155 (585)
T ss_pred HHHcCCeEEEEeccccCcchhhe---eeeeeccc
Confidence 99999999999887766666666 77776654
No 9
>cd03142 GATase1_ThuA Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). Type 1 glutamine amidotransferase (GATase1)-like domain found in Sinorhizobium meliloti Rm1021 ThuA (SmThuA). This group includes proteins similar to SmThuA which plays a role in a major pathway for trehalose catabolism. SmThuA is induced by trehalose but not by related structurally similar disaccharides like sucrose or maltose. Proteins in this group lack the catalytic triad of typical GATase1 domains: a His replaces the reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. S. meliloti Rm1021 thuA mutants are impaired in competitive colonization of Medicago sativa roots but are more competitive than the wild-type Rml021 in infecting alfalfa roots and forming nitrogen-fixing nodules.
Probab=94.41 E-value=0.12 Score=49.31 Aligned_cols=73 Identities=22% Similarity=0.228 Sum_probs=52.3
Q ss_pred cchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC-CCCCCCccHHHHHHHHHCCCcEEEEeC
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVDSGHDLIVAAD 116 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~L~~Fi~~GGNlLi~~~ 116 (422)
.-+..+...|+++||+|+....+|..-.|....=..||.||..+... +.++ +...+.|.+||++||.++.+=+
T Consensus 23 ~~~~~~~~~L~~~gf~V~~~~~~d~~~~~~~~~L~~~D~lV~~~~~~~~~l~-~eq~~~l~~~V~~GgGlv~lHs 96 (215)
T cd03142 23 GMHGTIAAALAEYGFDVQTATLDEPEHGLTEEVLAETDVLLWWGHIAHDEVK-DEIVERVHRRVLDGMGLIVLHS 96 (215)
T ss_pred hHHHHHHHHHHhcCcEEEEEeccCccccCCHhHHhcCCEEEEeCCCCcCcCC-HHHHHHHHHHHHcCCCEEEECC
Confidence 34567889999999999976555543223332236789999876654 6574 4567899999999999996643
No 10
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=94.20 E-value=0.81 Score=37.48 Aligned_cols=74 Identities=19% Similarity=0.471 Sum_probs=53.8
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----Eeecc-ccCCCceEEEEEecCCc--eeeeEEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTL-STDQKGHYSAEFKVPDV--YGVFQFKV 364 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy----~R~~l-~~~~~~~y~~~f~~PD~--hGvf~f~v 364 (422)
+...||-+|.|.+.+-+-..++ +..|. .+..+++...||- .+... ..+..|.|+.+|+||+. .|.|+.++
T Consensus 7 Dr~iYrPGetV~~~~~~~~~~~-~~~~~--~~~~~~v~i~dp~g~~v~~~~~~~~~~~G~~~~~~~lp~~~~~G~y~i~~ 83 (99)
T PF01835_consen 7 DRPIYRPGETVHFRAIVRDLDN-DFKPP--ANSPVTVTIKDPSGNEVFRWSVNTTNENGIFSGSFQLPDDAPLGTYTIRV 83 (99)
T ss_dssp SSSEE-TTSEEEEEEEEEEECT-TCSCE--SSEEEEEEEEETTSEEEEEEEEEETTCTTEEEEEEE--SS---EEEEEEE
T ss_pred CccCcCCCCEEEEEEEEecccc-ccccc--cCCceEEEEECCCCCEEEEEEeeeeCCCCEEEEEEECCCCCCCEeEEEEE
Confidence 3558999999999999998883 22332 4577788889993 33444 44679999999999998 69999999
Q ss_pred eeee
Q 014568 365 EYQR 368 (422)
Q Consensus 365 ~Y~R 368 (422)
.+..
T Consensus 84 ~~~~ 87 (99)
T PF01835_consen 84 KTDD 87 (99)
T ss_dssp EETT
T ss_pred EEcc
Confidence 9953
No 11
>KOG4266 consensus Subtilisin kexin isozyme-1/site 1 protease, subtilase superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=92.99 E-value=1.2 Score=48.19 Aligned_cols=96 Identities=17% Similarity=0.297 Sum_probs=68.7
Q ss_pred cchhHHH---HHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-CCcEEEEeC--
Q 014568 43 SSHSLYF---GSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GHDLIVAAD-- 116 (422)
Q Consensus 43 ~~~S~f~---~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-GGNlLi~~~-- 116 (422)
+.|..|. +.|++.||-++... -.+.-++...|-.|++.++..+-| ..|+++|.+=+.+ |=++.|.++
T Consensus 646 HiHTNFrdMY~hLR~~GYyievLg-----~PfTCFdAsqYGtLLmVD~E~~yf--pEEI~kLr~dV~n~GL~lVvF~dWY 718 (1033)
T KOG4266|consen 646 HIHTNFRDMYNHLRDAGYYIEVLG-----SPFTCFDASQYGTLLMVDLEDDYF--PEEIEKLRDDVINTGLGLVVFADWY 718 (1033)
T ss_pred cccccHHHHHHHHHhcceehhhhc-----CCceeccHhHCceEEEEccccccC--HHHHHHHHHHHHhcCceEEEEeccc
Confidence 4455565 45899999998741 124455667788899999988844 4699999998888 668877765
Q ss_pred --------------------CC----CcHHHHHHHHHcCceecCCCCeEEEeccCc
Q 014568 117 --------------------SN----ASDLIREVATECGVDFDEDPAAMVIDHINY 148 (422)
Q Consensus 117 --------------------~~----~~~~l~~ll~elGI~~~~~~~~~VvD~f~~ 148 (422)
|. .-..++.||+.+||-+..+ +.--+|.-
T Consensus 719 Nt~vM~K~kFfDeNTRqWWtPdTGGANIPALN~LL~~fgiaFgD~---i~eG~F~l 771 (1033)
T KOG4266|consen 719 NTDVMVKMKFFDENTRQWWTPDTGGANIPALNNLLASFGIAFGDK---ILEGDFSL 771 (1033)
T ss_pred cceeeeeeeeeccCcceeccCCCCCcCcHhHHHHHhhhccccccc---eecceeee
Confidence 11 1268999999999999986 44445543
No 12
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=92.78 E-value=0.39 Score=45.34 Aligned_cols=204 Identities=17% Similarity=0.175 Sum_probs=98.4
Q ss_pred eEEEEEcC-cccc-----cchhHHHHHHH-hCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHH
Q 014568 31 RVLVLVDD-FAIK-----SSHSLYFGSLT-SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (422)
Q Consensus 31 r~LVlld~-~~~~-----~~~S~f~~~L~-~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~ 103 (422)
|+||+..+ ...+ .....|.+.|+ +.||+++... +. -.+....=..||.||++....+.++ +...+.|.+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~--~~-~~~~~~~L~~~Dvvv~~~~~~~~l~-~~~~~al~~ 76 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTE--DP-DDLTPENLKGYDVVVFYNTGGDELT-DEQRAALRD 76 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECC--SG-GCTSHHCHCT-SEEEEE-SSCCGS--HHHHHHHHH
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEe--Cc-ccCChhHhcCCCEEEEECCCCCcCC-HHHHHHHHH
Confidence 68888866 2322 23334666676 6899998742 11 0122222367899999998854464 557799999
Q ss_pred HHHCCCcEEEEe-CC-CCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceeccCCcccCce
Q 014568 104 FVDSGHDLIVAA-DS-NASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVILGSKKIEAPV 181 (422)
Q Consensus 104 Fi~~GGNlLi~~-~~-~~~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv~~~~i~~~~i~~~~~~~~~v 181 (422)
|+++||.++.+= .. ........+.+=+|-.+.. |-.. .+.-+.. .-.+|||+..-...-.+
T Consensus 77 ~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~--------h~~~--------~~~~v~~-~~~~HPi~~gl~~~f~~ 139 (217)
T PF06283_consen 77 YVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKG--------HPPP--------QPFTVRV-EDPDHPITRGLPESFTI 139 (217)
T ss_dssp HHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEE--------EECE--------EEEEEEE-SSTTSCCCTTS-SEEEE
T ss_pred HHHcCCCEEEEcccccccchhHHHHHHeeCccccC--------CCCC--------ceEEEEE-cCCCChhhcCCCCCceE
Confidence 999999999764 22 2222345555555633322 2111 1111111 11346766331100001
Q ss_pred ---eeeceeEEeecCCceeEeeeEeCCceeecCCCCCCCCCCCCCCCceeEEEEEEecCCcEEEEEeccccccCccCccc
Q 014568 182 ---LFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSMFSNRHEKSG 258 (422)
Q Consensus 182 ---l~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRvvvvGS~d~fSd~~~~~~ 258 (422)
+|...- . ..+.+.+|+++..++|.... ..| ....++=.....++|+..+.=++--+ .+....
T Consensus 140 ~DE~Y~~~~---~-~~~~~~vL~~~~~~~~~~~~---------~~~-~~~Pv~W~~~~GkGRvf~~~lGH~~~-~~~~~~ 204 (217)
T PF06283_consen 140 YDEWYYFLR---D-PRPNVTVLLTADESSYDPEG---------GEG-GDHPVAWTREYGKGRVFYTTLGHDEE-TWEDPD 204 (217)
T ss_dssp EEEEEES-B---S----CEEEEEEEE--GGG--T---------TTS-SEEEEEEEEECTTEEEEEE----TTS-HHHBHH
T ss_pred ccccccccc---C-CCCCEEEEEEEEeccccccc---------cCC-CeEEEEEEEEeCCeeEEEECCCCChh-hcCCHH
Confidence 111110 1 22348888888865553210 111 11233333346779999988665322 123445
Q ss_pred hHHHHHHHhhcc
Q 014568 259 NEQFLTEISKWV 270 (422)
Q Consensus 259 N~~f~~~l~~W~ 270 (422)
=++++.+-+.|+
T Consensus 205 ~~~ll~ngi~Wa 216 (217)
T PF06283_consen 205 FRRLLRNGIRWA 216 (217)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhh
Confidence 677888889996
No 13
>cd03143 A4_beta-galactosidase_middle_domain A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. A4 beta-galactosidase middle domain: a type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to beta-galactosidase from Thermus thermophilus. Beta-Galactosidase hydrolyzes the beta-1,4-D-galactosidic linkage of lactose, as well as those of related chromogens, o-nitrophenyl-beta-D-galactopyranoside (ONP-Gal) and 5-bromo-4-chloro-3-indolyl-beta-D-galactoside (X-gal). This A4 beta-galactosidase middle domain lacks the catalytic triad of typical GATase1 domains. The reactive Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in typical GATase1 domains is not conserved in this group.
Probab=92.63 E-value=0.34 Score=43.03 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=42.7
Q ss_pred cchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEE
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIV 113 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi 113 (422)
+..-.+.+.|.+.|..+++..+++. | ..|+.||+ |....++ +...+.|.+|+++||.++.
T Consensus 26 ~~~~~~~~~l~~~gi~~d~v~~~~~---l-----~~y~~vi~--P~~~~~~-~~~~~~l~~~v~~GG~li~ 85 (154)
T cd03143 26 DLALALYRALRELGIPVDVVPPDAD---L-----SGYKLVVL--PDLYLLS-DATAAALRAYVENGGTLVA 85 (154)
T ss_pred HHHHHHHHHHHHCCCCEEEECCCCC---c-----ccCCEEEE--CchhcCC-HHHHHHHHHHHHCCCEEEE
Confidence 4455688899999999998753322 2 26788777 3334343 4578999999999995554
No 14
>PF08532 Glyco_hydro_42M: Beta-galactosidase trimerisation domain; InterPro: IPR013738 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is non catalytic domain B of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. This domain is related to glutamine amidotransferase enzymes, but the catalytic residues are replaced by non functional amino acids. This domain is involved in trimerisation. ; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process; PDB: 1KWK_A 1KWG_A.
Probab=92.24 E-value=0.23 Score=46.70 Aligned_cols=62 Identities=24% Similarity=0.409 Sum_probs=34.0
Q ss_pred hhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCC
Q 014568 45 HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS 117 (422)
Q Consensus 45 ~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~ 117 (422)
-..+.+.|.++|..+++..+++ +|.. |..||+ |....++ +...++|.+|+++||+|++..-+
T Consensus 32 ~~~~y~al~~~gi~vDvv~~~~---dL~~-----Ykllv~--P~~~~l~-~~~~~~L~~yV~~GG~li~~~~t 93 (207)
T PF08532_consen 32 VRGWYRALRELGIPVDVVSPDD---DLSG-----YKLLVL--PSLYILS-PEFAERLRAYVENGGTLILTPRT 93 (207)
T ss_dssp HHHHHHHHHTTT--EEEE-TTS-----TT------SEEEE--S--SC---HHH---HHHHHT-SS-EEE-TTT
T ss_pred HHHHHHHHHHcCCceEEecCcC---Cccc-----CcEEEE--eeEEEEC-hHHHHHHHHHHHCCCEEEEEccc
Confidence 3457789999999999987665 3443 676554 5555453 45678899999999999866544
No 15
>PF07090 DUF1355: Protein of unknown function (DUF1355); InterPro: IPR010768 This entry is found in several hypothetical bacterial proteins of around 250 residues in length. The function of these proteins is unknown.; PDB: 2GK3_D 3SOZ_C 3RHT_D.
Probab=87.20 E-value=0.58 Score=43.38 Aligned_cols=72 Identities=17% Similarity=0.264 Sum_probs=46.2
Q ss_pred HHHHHHHhCCceEEEeeCCCC-----CccccccCccccCEEEEeCCCCCCC-----CCCccHHHHHHHHHCCCcEEEEeC
Q 014568 47 LYFGSLTSRGFQLEFKLADDP-----NIGLQRYGQYLYDALVLFCPSVERF-----GGSIDVASIVDFVDSGHDLIVAAD 116 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~-----~l~L~~~g~~~yd~LVI~~p~~~~~-----~~~~e~~~L~~Fi~~GGNlLi~~~ 116 (422)
.+...|...+++++....++. .-.|+..+-..||.+|+-.-....+ + ....+.|.+|+++||-++++++
T Consensus 31 ~l~~~l~~~~~~~~~~p~~~~~~~fP~~~lf~~~L~~yD~vIl~dv~~~~ll~~~~~-~~~~~~l~~yV~~GGgLlmigG 109 (177)
T PF07090_consen 31 LLHFALLRPGIEVDYIPAHEALIAFPTTLLFDEELNRYDVVILSDVPANSLLKSRRS-PNQLELLADYVRDGGGLLMIGG 109 (177)
T ss_dssp HHHHHHHHTT-EEEEEEHHHHHHH--SSC--SHHHCT-SEEEEES--HHHHHT-----HHHHHHHHHHHHTT-EEEEE-S
T ss_pred HHHHHHhcCCccccccccchhhhhCCCchhhhhHHhcCCEEEEeCCCchhcccccCC-HHHHHHHHHHHHhCCEEEEEeC
Confidence 467788888999987644321 1123445558899999988777656 4 4467899999999999998887
Q ss_pred CCC
Q 014568 117 SNA 119 (422)
Q Consensus 117 ~~~ 119 (422)
+..
T Consensus 110 ~~s 112 (177)
T PF07090_consen 110 PRS 112 (177)
T ss_dssp TTS
T ss_pred hhh
Confidence 754
No 16
>PRK05568 flavodoxin; Provisional
Probab=86.06 E-value=12 Score=32.46 Aligned_cols=102 Identities=10% Similarity=0.105 Sum_probs=62.7
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC---ccHHHHHHH
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS---IDVASIVDF 104 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~---~e~~~L~~F 104 (422)
++++|+|.+..- +.-=..+.+.+++.|.+++.....+.+. ..-..||.||+.+|.-- .+- ...+.+.+.
T Consensus 2 ~~~~IvY~S~~GnT~~~a~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsp~y~--~~~~~~~~~~~f~~~ 75 (142)
T PRK05568 2 KKINIIYWSGTGNTEAMANLIAEGAKENGAEVKLLNVSEASV----DDVKGADVVALGSPAMG--DEVLEEGEMEPFVES 75 (142)
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEECCCCCH----HHHHhCCEEEEECCccC--cccccchhHHHHHHH
Confidence 368899977522 3333457778889999998765544322 13467899999999743 111 123333333
Q ss_pred HH---CCCcEEEEeCCC-----CcHHHHHHHHHcCceecCC
Q 014568 105 VD---SGHDLIVAADSN-----ASDLIREVATECGVDFDED 137 (422)
Q Consensus 105 i~---~GGNlLi~~~~~-----~~~~l~~ll~elGI~~~~~ 137 (422)
+. +|..+.+.+..+ ..+.+...++++|+.....
T Consensus 76 ~~~~~~~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~ 116 (142)
T PRK05568 76 ISSLVKGKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNE 116 (142)
T ss_pred hhhhhCCCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCC
Confidence 32 466676665432 1355677888899888775
No 17
>PF00630 Filamin: Filamin/ABP280 repeat; InterPro: IPR017868 The many different actin cross-linking proteins share a common architecture, consisting of a globular actin-binding domain and an extended rod. Whereas their actin-binding domains consist of two calponin homology domains (see IPR001715 from INTERPRO), their rods fall into three families. The rod domain of the family including the Dictyostelium discoideum (Slime mould) gelation factor (ABP120) and human filamin (ABP280) is constructed from tandem repeats of a 100-residue motif that is glycine and proline rich []. The gelation factor's rod contains 6 copies of the repeat, whereas filamin has a rod constructed from 24 repeats. The resolution of the 3D structure of rod repeats from the gelation factor has shown that they consist of a beta-sandwich, formed by two beta-sheets arranged in an immunoglobulin-like fold [, ]. Because conserved residues that form the core of the repeats are preserved in filamin, the repeat structure should be common to the members of the gelation factor/filamin family. The head to tail homodimerisation is crucial to the function of the ABP120 and ABP280 proteins. This interaction involves a small portion at the distal end of the rod domains. For the gelation factor it has been shown that the carboxy-terminal repeat 6 dimerises through a double edge-to-edge extension of the beta-sheet and that repeat 5 contributes to dimerisation to some extent [, , ].; PDB: 2DI9_A 2EEC_A 2DIC_A 2EEA_A 2DMC_A 2EE9_A 2D7O_A 2D7N_A 2K7P_A 2NQC_A ....
Probab=85.75 E-value=2.6 Score=34.23 Aligned_cols=68 Identities=19% Similarity=0.359 Sum_probs=47.8
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc-------eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP-------YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldP-------y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+++...+|.|+... .+|....-..+++|+++ .+| -+...+...++|+|.++|+ |.+.|-|+..|.|..
T Consensus 18 ~~g~~~~F~V~~~d-~~g~~~~~~~~~~~v~i--~~p~~~~~~~~~~~~v~~~~~G~y~v~y~-p~~~G~y~i~V~~~g 92 (101)
T PF00630_consen 18 VVGEPATFTVDTRD-AGGNPVSSGGDEFQVTI--TSPDGKEEPVPVPVEVIDNGDGTYTVSYT-PTEPGKYKISVKING 92 (101)
T ss_dssp ETTSEEEEEEEETT-TTSSBEESTSSEEEEEE--ESSSSESS--EEEEEEEEESSSEEEEEEE-ESSSEEEEEEEEESS
T ss_pred ECCCcEEEEEEEcc-CCCCccccCCceeEEEE--eCCCCCccccccceEEEECCCCEEEEEEE-eCccEeEEEEEEECC
Confidence 77778888887763 22333343446677665 555 3445555668999999999 777899999999865
No 18
>COG5426 Uncharacterized membrane protein [Function unknown]
Probab=83.19 E-value=1.9 Score=40.51 Aligned_cols=71 Identities=20% Similarity=0.277 Sum_probs=47.9
Q ss_pred HHHHHHHhCCceEEEeeCCCCC--ccccccCccccCEEEEeCCCCCCC--------CCC---ccHHHHHHHHHCCCcEEE
Q 014568 47 LYFGSLTSRGFQLEFKLADDPN--IGLQRYGQYLYDALVLFCPSVERF--------GGS---IDVASIVDFVDSGHDLIV 113 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~--l~L~~~g~~~yd~LVI~~p~~~~~--------~~~---~e~~~L~~Fi~~GGNlLi 113 (422)
-+++.|++-+|++++-.+-+.. +.-..++-..||.+||-+.-+..| ... --.+.|++|+++||-+|+
T Consensus 36 ~Ll~~Lr~g~~dv~yMpAH~~q~~FPqtme~L~~YDaivlSDiGsNt~LL~~~t~~~~k~~Pn~L~likdyV~~GGGLLM 115 (254)
T COG5426 36 PLLKALRGGEYDVTYMPAHDAQEKFPQTMEGLDAYDAIVLSDIGSNTLLLQPATWYHSKIVPNRLKLIKDYVENGGGLLM 115 (254)
T ss_pred HHHHHHhCCCcceEEechHHHHHhcchhhhhhcccceEEEeecCCceeeccccceeecccCccHHHHHHHHHhcCCcEEE
Confidence 3788999999999996544432 223344457789988865533322 111 134789999999999998
Q ss_pred EeCC
Q 014568 114 AADS 117 (422)
Q Consensus 114 ~~~~ 117 (422)
.++-
T Consensus 116 iGGY 119 (254)
T COG5426 116 IGGY 119 (254)
T ss_pred EccE
Confidence 7763
No 19
>PRK05569 flavodoxin; Provisional
Probab=82.77 E-value=16 Score=31.68 Aligned_cols=103 Identities=13% Similarity=0.121 Sum_probs=61.1
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC-CCCCccHHHHHHHHH
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGSIDVASIVDFVD 106 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~-~~~~~e~~~L~~Fi~ 106 (422)
.+++++|.+..- +.-=..+.+.|++.|.+++.....+.+. ..-..||.||+-+|.-.. ..+.-..+.+.+.+.
T Consensus 2 ~ki~iiY~S~tGnT~~iA~~i~~~~~~~g~~v~~~~~~~~~~----~~~~~~d~iilgsPty~~~~~~~~~~~~~~~~l~ 77 (141)
T PRK05569 2 KKVSIIYWSCGGNVEVLANTIADGAKEAGAEVTIKHVADAKV----EDVLEADAVAFGSPSMDNNNIEQEEMAPFLDQFK 77 (141)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHhCCCeEEEEECCcCCH----HHHhhCCEEEEECCCcCCCcCChHHHHHHHHHhh
Confidence 378999987521 2222356777888899988764444322 133678999999997531 111113455555554
Q ss_pred ----CCCcEEEEeCCCC-----cHHHHHHHHHcCceecC
Q 014568 107 ----SGHDLIVAADSNA-----SDLIREVATECGVDFDE 136 (422)
Q Consensus 107 ----~GGNlLi~~~~~~-----~~~l~~ll~elGI~~~~ 136 (422)
+|..+.+.+..+. .+.++.++++.|+.+..
T Consensus 78 ~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~ 116 (141)
T PRK05569 78 LTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIG 116 (141)
T ss_pred ccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEee
Confidence 3555665554321 24567778888887755
No 20
>PF10634 Iron_transport: Fe2+ transport protein; InterPro: IPR018470 This is a bacterial family of periplasmic proteins that are thought to function in high-affinity Fe2+ transport.; PDB: 3LZP_B 3LZN_B 3LZR_A 3LZQ_B 3LZO_A 3LZL_B 3PJN_A 3PJL_A 2O6D_A 2O6C_B ....
Probab=81.24 E-value=5 Score=36.19 Aligned_cols=69 Identities=19% Similarity=0.337 Sum_probs=33.2
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeCc--eEeec---cccCCCceEEEEEecCCceeeeEEEEe
Q 014568 298 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMSP--YVLKT---LSTDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 298 i~d~v~y~i~i~e~~~-------~~w~P~~~~d~QlEf~mldP--y~R~~---l~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
=+.+|+-+++|+-..+ |.|+||-. |..+++..|= -..-+ |...+.-.|-.+.|+ +-=|-|+-++.
T Consensus 39 ~~sdiHLEADIhA~~~n~~Gf~~G~wvPyL~--v~y~i~~~~~~~~~~G~~mPM~A~DGpHYG~Nvkl-~g~G~Y~v~~~ 115 (151)
T PF10634_consen 39 SESDIHLEADIHATEGNPNGFGEGDWVPYLT--VSYEITKKGSGKVQEGTFMPMVASDGPHYGDNVKL-DGPGKYKVTFT 115 (151)
T ss_dssp GG-SEEEEEEEEE-TTGCCS--TTSB--S-E--EEEEEEETTTTEEEEEEEEEEEETTEEEEEEEE-S-TSSEEEEEEEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcccCCcE--EEEEEEeCCCCeEEEEecceeecCcCccccccccC-CCCccEEEEEE
Confidence 4678999999998853 69999942 4444444431 11111 112333356666666 44455555554
Q ss_pred eeec
Q 014568 366 YQRL 369 (422)
Q Consensus 366 Y~R~ 369 (422)
..-|
T Consensus 116 I~pP 119 (151)
T PF10634_consen 116 IGPP 119 (151)
T ss_dssp EE-G
T ss_pred EcCc
Confidence 4444
No 21
>TIGR01753 flav_short flavodoxin, short chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the short chain type. Many of these are involved in sulfite reduction.
Probab=79.29 E-value=25 Score=29.95 Aligned_cols=102 Identities=15% Similarity=0.203 Sum_probs=59.4
Q ss_pred EEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCC-CCCCCccHHHHHHHHH--
Q 014568 32 VLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE-RFGGSIDVASIVDFVD-- 106 (422)
Q Consensus 32 ~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~-~~~~~~e~~~L~~Fi~-- 106 (422)
++|+|.++.- +.-=..+.+.|++.|++++.....+.+. ..-..||.||+..|.-. ...++-..+.+.+.+.
T Consensus 1 v~Iiy~S~tGnT~~~A~~i~~~~~~~g~~v~~~~~~~~~~----~~l~~~d~iilgspty~~g~~p~~~~~~f~~~l~~~ 76 (140)
T TIGR01753 1 ILIVYASMTGNTEEMANIIAEGLKEAGAEVDLLEVADADA----EDLLSYDAVLLGCSTWGDEDLEQDDFEPFFEELEDI 76 (140)
T ss_pred CEEEEECCCcHHHHHHHHHHHHHHhcCCeEEEEEcccCCH----HHHhcCCEEEEEcCCCCCCCCCcchHHHHHHHhhhC
Confidence 3677766421 2222346677888899998765444321 11245899999999853 1111125566666665
Q ss_pred --CCCcEEEEeCCCC-------cHHHHHHHHHcCceecCC
Q 014568 107 --SGHDLIVAADSNA-------SDLIREVATECGVDFDED 137 (422)
Q Consensus 107 --~GGNlLi~~~~~~-------~~~l~~ll~elGI~~~~~ 137 (422)
+|-.+.+.+..+. ...++..++++|...-..
T Consensus 77 ~~~gk~~~vfgt~g~~~~f~~~~~~~~~~l~~~g~~~v~~ 116 (140)
T TIGR01753 77 DLGGKKVALFGSGDWGYEFCEAVDDWEERLKEAGATIIAE 116 (140)
T ss_pred CCCCCEEEEEecCCCCchhhHHHHHHHHHHHHCCCEEecC
Confidence 3545555543221 346778888899887554
No 22
>PF13115 YtkA: YtkA-like
Probab=79.26 E-value=10 Score=30.07 Aligned_cols=62 Identities=21% Similarity=0.353 Sum_probs=43.6
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC----c--eEeeccccCCCceEEEEEecCCceeeeEEEE
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS----P--YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKV 364 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mld----P--y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v 364 (422)
+.++. + |.+. ......|....+||+|+.|-+ + ..-..+...+.|+|.++.+++. =|.|+.+|
T Consensus 18 ~~g~~-~--i~v~--~~~~g~pv~~a~V~~~~~m~~~~g~~~~~~~~~~~~~~~G~Y~~~~~f~m-~G~W~i~v 85 (86)
T PF13115_consen 18 KVGEN-T--ITVT--VDQGGKPVTDADVQFEIWMPDMEGMEPMTSKVELEETGPGVYEAEVTFSM-AGTWQITV 85 (86)
T ss_pred cCCce-E--EEEE--ECCCCCCCCCCEEEEEEEeCCCCCCCCCceeeeeecCCCCeEEEEeecCC-CeeEEEEE
Confidence 55555 3 4444 455667998777999999997 3 3444455567999999977765 77887765
No 23
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=76.54 E-value=27 Score=29.73 Aligned_cols=82 Identities=16% Similarity=0.128 Sum_probs=53.1
Q ss_pred HHHHHHHhCCceEEEeeCCCCCc-------cccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCC
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNI-------GLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA 119 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l-------~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~ 119 (422)
+.++.|+++||++-...|+...+ +|.. .+..-|.++|+-|+.. .++.+.+-.+.|=+-+|+-....
T Consensus 18 ~v~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~e-~p~~iDlavv~~~~~~------~~~~v~~~~~~g~~~v~~~~g~~ 90 (116)
T PF13380_consen 18 RVLRNLKAAGYEVYPVNPKGGEILGIKCYPSLAE-IPEPIDLAVVCVPPDK------VPEIVDEAAALGVKAVWLQPGAE 90 (116)
T ss_dssp HHHHHHHHTT-EEEEESTTCSEETTEE-BSSGGG-CSST-SEEEE-S-HHH------HHHHHHHHHHHT-SEEEE-TTS-
T ss_pred HHHHHHHhCCCEEEEECCCceEECcEEeeccccC-CCCCCCEEEEEcCHHH------HHHHHHHHHHcCCCEEEEEcchH
Confidence 47778888999999887776542 1222 2356699998877544 45677777777866666666677
Q ss_pred cHHHHHHHHHcCceec
Q 014568 120 SDLIREVATECGVDFD 135 (422)
Q Consensus 120 ~~~l~~ll~elGI~~~ 135 (422)
.+.+..++++.||.+.
T Consensus 91 ~~~~~~~a~~~gi~vi 106 (116)
T PF13380_consen 91 SEELIEAAREAGIRVI 106 (116)
T ss_dssp -HHHHHHHHHTT-EEE
T ss_pred HHHHHHHHHHcCCEEE
Confidence 7889999999999988
No 24
>PRK06703 flavodoxin; Provisional
Probab=75.50 E-value=30 Score=30.40 Aligned_cols=102 Identities=14% Similarity=0.205 Sum_probs=60.2
Q ss_pred eEEEEEcCc-cc-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHC
Q 014568 31 RVLVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~-~~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~ 107 (422)
|++|+|.+. +. +.-=..+.+.|+..|++++....++.. ......||.|||..|... .+. ..+.+.+.+.+++
T Consensus 3 kv~IiY~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~----~~~l~~~d~viigspt~~-~g~~p~~~~~f~~~l~~ 77 (151)
T PRK06703 3 KILIAYASMSGNTEDIADLIKVSLDAFDHEVVLQEMDGMD----AEELLAYDGIILGSYTWG-DGDLPYEAEDFHEDLEN 77 (151)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhcCCceEEEehhhCC----HHHHhcCCcEEEEECCCC-CCcCcHHHHHHHHHHhc
Confidence 688899764 22 222224567788999998865443321 112367899999888653 221 1135556666652
Q ss_pred ----CCcEEEEeCCCC--------cHHHHHHHHHcCceecCC
Q 014568 108 ----GHDLIVAADSNA--------SDLIREVATECGVDFDED 137 (422)
Q Consensus 108 ----GGNlLi~~~~~~--------~~~l~~ll~elGI~~~~~ 137 (422)
|-.+.+.+..+. ...+...++++|..+...
T Consensus 78 ~~l~~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 78 IDLSGKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred CCCCCCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 334445442221 233888899999988664
No 25
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=75.16 E-value=31 Score=29.79 Aligned_cols=105 Identities=16% Similarity=0.195 Sum_probs=60.6
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------cc------cccCccccCEEEEeCCCCC--CCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GL------QRYGQYLYDALVLFCPSVE--RFGG 94 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------~L------~~~g~~~yd~LVI~~p~~~--~~~~ 94 (422)
+.|+.+++-+.-.....+...+-|+..|+++.+.+++...+ .+ .......||.|||...... .+..
T Consensus 1 ~~~v~ill~~g~~~~e~~~~~~~~~~a~~~v~vvs~~~~~v~s~~g~~i~~~~~l~~~~~~~~D~liVpGg~~~~~~~~~ 80 (142)
T cd03132 1 GRKVGILVADGVDAAELSALKAALKAAGANVKVVAPTLGGVVDSDGKTLEVDQTYAGAPSVLFDAVVVPGGAEAAFALAP 80 (142)
T ss_pred CCEEEEEEcCCcCHHHHHHHHHHHHHCCCEEEEEecCcCceecCCCcEEecceeecCCChhhcCEEEECCCccCHHHHcc
Confidence 45777777555566778889999999999999887654321 11 1111235899888654221 0111
Q ss_pred -CccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCe
Q 014568 95 -SIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAA 140 (422)
Q Consensus 95 -~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~~~~ 140 (422)
..-.+-|.++.++|. .+.+...+. .+|.+-|+-..+. |.
T Consensus 81 ~~~l~~~l~~~~~~~~-~I~aic~G~-----~~La~aGll~~~~-gv 120 (142)
T cd03132 81 SGRALHFVTEAFKHGK-PIGAVGEGS-----DLLEAAGIPLEDP-GV 120 (142)
T ss_pred ChHHHHHHHHHHhcCC-eEEEcCchH-----HHHHHcCCCCCCC-cE
Confidence 112244556666555 443433332 5677788855543 54
No 26
>PRK06756 flavodoxin; Provisional
Probab=73.82 E-value=36 Score=29.74 Aligned_cols=102 Identities=17% Similarity=0.176 Sum_probs=58.6
Q ss_pred CeEEEEEcCc-ccccchh-HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-
Q 014568 30 RRVLVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (422)
Q Consensus 30 ~r~LVlld~~-~~~~~~S-~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~- 106 (422)
.|++|+|.+. +..+... ...+.|+++|.+++.....+.. . ...-..||.+|+-.|... .+ . -+..+.+|++
T Consensus 2 mkv~IiY~S~tGnTe~vA~~ia~~l~~~g~~v~~~~~~~~~-~--~~~~~~~d~vi~gspt~~-~g-~-~p~~~~~fl~~ 75 (148)
T PRK06756 2 SKLVMIFASMSGNTEEMADHIAGVIRETENEIEVIDIMDSP-E--ASILEQYDGIILGAYTWG-DG-D-LPDDFLDFYDA 75 (148)
T ss_pred ceEEEEEECCCchHHHHHHHHHHHHhhcCCeEEEeehhccC-C--HHHHhcCCeEEEEeCCCC-CC-C-CcHHHHHHHHH
Confidence 3789999775 2222222 3567788899998865433321 0 122357899999888753 21 1 1223444543
Q ss_pred ------CCCcEEEEeCCC--------CcHHHHHHHHHcCceecCC
Q 014568 107 ------SGHDLIVAADSN--------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 107 ------~GGNlLi~~~~~--------~~~~l~~ll~elGI~~~~~ 137 (422)
+|-.+.+.+..+ ....+...+++.|+..-..
T Consensus 76 l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~ 120 (148)
T PRK06756 76 MDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLE 120 (148)
T ss_pred HhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCC
Confidence 244555554422 1356777888889888664
No 27
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=71.64 E-value=20 Score=27.61 Aligned_cols=79 Identities=14% Similarity=0.037 Sum_probs=45.4
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC---CccHHHHHHHHHCCC
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG---SIDVASIVDFVDSGH 109 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~---~~e~~~L~~Fi~~GG 109 (422)
.+++.+......+....+.|+..|++++........... ......||.|||-......... ....+.++++.++|+
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (115)
T cd01653 2 AVLLFPGFEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLARDEALLALLREAAAAGK 80 (115)
T ss_pred EEEecCCCchhhhHHHHHHHHHCCCeEEEEcCCCCceec-cCChhccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCC
Confidence 344555444556778899999999999987555542211 2334788998886544331111 112344555555544
Q ss_pred cEE
Q 014568 110 DLI 112 (422)
Q Consensus 110 NlL 112 (422)
.++
T Consensus 81 ~i~ 83 (115)
T cd01653 81 PIL 83 (115)
T ss_pred EEE
Confidence 444
No 28
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=71.29 E-value=24 Score=25.78 Aligned_cols=78 Identities=14% Similarity=0.056 Sum_probs=45.7
Q ss_pred EEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC---CccHHHHHHHHHCCCc
Q 014568 34 VLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG---SIDVASIVDFVDSGHD 110 (422)
Q Consensus 34 Vlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~---~~e~~~L~~Fi~~GGN 110 (422)
++.++......+..+.+.++..|+++....+....... ......||.||+.......... ....+.+.++.++|+-
T Consensus 3 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (92)
T cd03128 3 VLLFGGSEELELASPLDALREAGAEVDVVSPDGGPVES-DVDLDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKP 81 (92)
T ss_pred EEecCCcEEEeeecHHHHHHhCCCEEEEEeCCCCcccc-cCCcccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCE
Confidence 44444444446667888899999999887555542221 2334678998887765542211 1124556666666544
Q ss_pred EE
Q 014568 111 LI 112 (422)
Q Consensus 111 lL 112 (422)
++
T Consensus 82 i~ 83 (92)
T cd03128 82 VL 83 (92)
T ss_pred EE
Confidence 44
No 29
>smart00557 IG_FLMN Filamin-type immunoglobulin domains. These form a rod-like structure in the actin-binding cytoskeleton protein, filamin. The C-terminal repeats of filamin bind beta1-integrin (CD29).
Probab=69.77 E-value=26 Score=28.40 Aligned_cols=63 Identities=14% Similarity=0.293 Sum_probs=42.6
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+++...+|.|+-..- -.++++.+...=| --+...++..++|+|.++|+ |.+-|.|+..|.|..
T Consensus 15 ~vg~~~~f~v~~~d~--------G~~~~~v~i~~p~g~~~~~~v~d~~dGty~v~y~-P~~~G~~~i~V~~~g 78 (93)
T smart00557 15 VVGEPAEFTIDTRGA--------GGGELEVEVTGPSGKKVPVEVKDNGDGTYTVSYT-PTEPGDYTVTVKFGG 78 (93)
T ss_pred ecCCCEEEEEEcCCC--------CCCcEEEEEECCCCCeeEeEEEeCCCCEEEEEEE-eCCCEeEEEEEEECC
Confidence 666666666665542 1355555554333 12555566667899999999 888899999998874
No 30
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=68.83 E-value=8.5 Score=32.96 Aligned_cols=21 Identities=29% Similarity=0.687 Sum_probs=17.4
Q ss_pred ccccCCCceEEEEEe-cCCcee
Q 014568 338 TLSTDQKGHYSAEFK-VPDVYG 358 (422)
Q Consensus 338 ~l~~~~~~~y~~~f~-~PD~hG 358 (422)
++++.++|+|.-.|+ .||++|
T Consensus 86 nv~~sD~G~Y~C~v~n~p~~~~ 107 (116)
T cd05879 86 NLDYTDNGTFTCDVKNPPDIVG 107 (116)
T ss_pred cCCcccCEEEEEEEEcCCCcCC
Confidence 356688999999999 888776
No 31
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=67.85 E-value=34 Score=32.66 Aligned_cols=37 Identities=16% Similarity=0.116 Sum_probs=28.7
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEeeCCC
Q 014568 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 30 ~r~LVlld-----~~~~~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
+|+||++. +-.+.......++.|++.|+++++.+|+.
T Consensus 2 kkVlills~~~~~dG~e~~E~~~P~~~L~~aG~~V~~aSp~~ 43 (217)
T PRK11780 2 KKIAVILSGCGVYDGSEIHEAVLTLLALDRAGAEAVCFAPDI 43 (217)
T ss_pred CEEEEEEccCCCCCCEehhHHHHHHHHHHHCCCEEEEEeCCC
Confidence 58999996 33345566678999999999999987654
No 32
>TIGR01755 flav_wrbA NAD(P)H:quinone oxidoreductase, type IV. This model represents a protein, WrbA, related to and slightly larger than flavodoxin. It was just shown, in E. coli and Archaeoglobus fulgidus (and previously for some eukaryotic homologs) to act as fourth type of NAD(P)H:quinone oxidoreductase. In E. coli, this protein was earlier reported to be produced during stationary phase, bind to the trp repressor, and make trp operon repression more efficient. WrbA does not interact with the trp operator by itself. Members are found in species in which homologs of the E. coli trp operon repressor TrpR are not detected.
Probab=67.78 E-value=44 Score=31.08 Aligned_cols=103 Identities=16% Similarity=0.114 Sum_probs=59.7
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhC-CceEEEeeCCCCCc---------------ccc-ccCccccCEEEEeCCCCCC
Q 014568 31 RVLVLVDDFA--IKSSHSLYFGSLTSR-GFQLEFKLADDPNI---------------GLQ-RYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 31 r~LVlld~~~--~~~~~S~f~~~L~~r-G~~v~~~~~~d~~l---------------~L~-~~g~~~yd~LVI~~p~~~~ 91 (422)
|+||++.+.. ++..=..+.+.+++. |.+++.....+... .+. ...-..||.+|+.+|..-
T Consensus 2 kilIiY~S~~G~T~~lA~~ia~g~~~~~g~ev~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~GSPty~- 80 (197)
T TIGR01755 2 KVLVLYYSMYGHIETMARAVAEGAREVDGAEVVVKRVPETVPEEVAEKSHGKTDQTAPVATPQELADYDAIIFGTPTRF- 80 (197)
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHHhcCCCEEEEEeccccCcHHHHHhccCCcccCCccCCHHHHHHCCEEEEEecccc-
Confidence 6889997751 122333567778875 99988654332210 001 122367899999999743
Q ss_pred CCCCccHHHHHHHHHCC----------CcE-EEEeCCCC----c----HHHHHHHHHcCceecCC
Q 014568 92 FGGSIDVASIVDFVDSG----------HDL-IVAADSNA----S----DLIREVATECGVDFDED 137 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~G----------GNl-Li~~~~~~----~----~~l~~ll~elGI~~~~~ 137 (422)
+ . -...++.|++.= |.. .++++.+. . ..++.++.+.|+.+-+.
T Consensus 81 -g-~-~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~l~~~Gm~vv~~ 142 (197)
T TIGR01755 81 -G-N-MASQMRNFLDQTGGLWASGALVGKVGSVFTSTGTQHGGQESTILSTWTTLLHHGMIIVPL 142 (197)
T ss_pred -c-C-ccHHHHHHHHhccccccccccCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEeCC
Confidence 2 2 233567777753 333 34443221 1 45666778999998875
No 33
>PF13709 DUF4159: Domain of unknown function (DUF4159)
Probab=67.27 E-value=18 Score=34.25 Aligned_cols=84 Identities=11% Similarity=0.129 Sum_probs=47.7
Q ss_pred chhHHHHHHHhC-CceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeC----CC
Q 014568 44 SHSLYFGSLTSR-GFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAAD----SN 118 (422)
Q Consensus 44 ~~S~f~~~L~~r-G~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~----~~ 118 (422)
....+...|.++ +.++....+ ..+.+...+-..|-.|.+-....-.|+ +.+.+.|++|+++||=|++=.. ..
T Consensus 20 ~l~~L~~~l~~~t~~~~~~~~~--~~v~~~~~~L~~yP~ly~~g~~~~~~s-~~e~~~Lr~Yl~~GGfl~~D~~~~~~~~ 96 (207)
T PF13709_consen 20 GLRNLSRFLNQRTSLEVGPEEP--QAVDLDDDELFFYPFLYWPGHGDFPLS-DEEIANLRRYLENGGFLLFDDRDCGSAG 96 (207)
T ss_pred HHHHHHHHHHHHhCCCccCCCC--cccCCCchhHHhCCEEEEeCCCCCCCC-HHHHHHHHHHHHcCCEEEEECCCccccc
Confidence 334455555444 334432111 223344433355567776666555565 6799999999999996665444 23
Q ss_pred CcHHHHHHHHHc
Q 014568 119 ASDLIREVATEC 130 (422)
Q Consensus 119 ~~~~l~~ll~el 130 (422)
...+++.+++++
T Consensus 97 ~~~~~r~~~~~v 108 (207)
T PF13709_consen 97 FDASFRRLMKRV 108 (207)
T ss_pred ccHHHHHHHHHh
Confidence 345666665553
No 34
>PRK09271 flavodoxin; Provisional
Probab=66.79 E-value=45 Score=29.81 Aligned_cols=85 Identities=11% Similarity=0.087 Sum_probs=48.4
Q ss_pred eEEEEEcCc-cc-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHC
Q 014568 31 RVLVLVDDF-AI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~-~~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~ 107 (422)
|++|++.+. +. +.-=....+.|+++|+++.....++..++=.......||.+||.+|... -+. ..+...+.+.+..
T Consensus 2 kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~vilgt~T~~-~G~~p~~~~~f~~~l~~ 80 (160)
T PRK09271 2 RILLAYASLSGNTREVAREIEERCEEAGHEVDWVETDVQTLAEYPLDPEDYDLYLLGTWTDN-AGRTPPEMKRFIAELAE 80 (160)
T ss_pred eEEEEEEcCCchHHHHHHHHHHHHHhCCCeeEEEecccccccccccCcccCCEEEEECcccC-CCcCCHHHHHHHHHHHH
Confidence 678899764 22 2222346788999999987553333322111223356899999998753 121 1245666666654
Q ss_pred ----CCcEEEEeC
Q 014568 108 ----GHDLIVAAD 116 (422)
Q Consensus 108 ----GGNlLi~~~ 116 (422)
|-.+.+.+.
T Consensus 81 ~~~~~k~~avfgs 93 (160)
T PRK09271 81 TIGKPPNVAVFGT 93 (160)
T ss_pred HhccCCeEEEEec
Confidence 333555543
No 35
>COG4635 HemG Flavodoxin [Energy production and conversion / Coenzyme metabolism]
Probab=64.34 E-value=10 Score=34.73 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=44.3
Q ss_pred eEEEEEcCc--ccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCC-CCCCCccHHHHHHHHHC
Q 014568 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE-RFGGSIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~--~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~-~~~~~~e~~~L~~Fi~~ 107 (422)
|+|++|-.+ .++.-=+.....|+++|++++....... ..-.-..||.+||.+|-.- ++ -+.+.+|+.+
T Consensus 2 k~LIlYstr~GqT~kIA~~iA~~L~e~g~qvdi~dl~~~----~~~~l~~ydavVIgAsI~~~h~-----~~~~~~Fv~k 72 (175)
T COG4635 2 KTLILYSTRDGQTRKIAEYIASHLRESGIQVDIQDLHAV----EEPALEDYDAVVIGASIRYGHF-----HEAVQSFVKK 72 (175)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHhhhcCCeeeeeehhhh----hccChhhCceEEEecchhhhhh-----HHHHHHHHHH
Confidence 789999554 3355556788899999999998621111 1113367899999998653 23 2455666653
No 36
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=61.66 E-value=44 Score=29.49 Aligned_cols=96 Identities=21% Similarity=0.203 Sum_probs=55.5
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCC-CCCc-------ccc------ccCccccCEEEEeCCCC-CCCCCC
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNI-------GLQ------RYGQYLYDALVLFCPSV-ERFGGS 95 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~-d~~l-------~L~------~~g~~~yd~LVI~~p~~-~~~~~~ 95 (422)
|+++++.+.-.........+.|+..||++++..++ ...+ .+. ......||.|+|..... +.+..+
T Consensus 1 ~v~il~~~gf~~~e~~~~~~~l~~a~~~v~~vs~~~~~~v~~~~g~~~i~~d~~~~~~~~~~~D~lvvpGG~~~~~~~~~ 80 (165)
T cd03134 1 KVAILAADGFEDVELTYPLYRLREAGAEVVVAGPEAGGEIQGKHGYDTVTVDLTIADVDADDYDALVIPGGTNPDKLRRD 80 (165)
T ss_pred CEEEEcCCCchHHHHHHHHHHHHHCCCEEEEEccCCCcccccCcCceeecCCCChHHCCHHHCCEEEECCCCChhhhccC
Confidence 56777776666777888888999999999998777 4322 111 11113689888866432 212111
Q ss_pred cc-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 96 ID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 96 ~e-~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.. .+-|.++.++|..|. +...+. .+|.+.|+
T Consensus 81 ~~~~~~l~~~~~~~~~i~-~ic~G~-----~~La~agl 112 (165)
T cd03134 81 PDAVAFVRAFAEAGKPVA-AICHGP-----WVLISAGV 112 (165)
T ss_pred HHHHHHHHHHHHcCCeEE-EEchHH-----HHHHhcCc
Confidence 11 234556666666554 333221 34555665
No 37
>PRK06490 glutamine amidotransferase; Provisional
Probab=60.12 E-value=78 Score=30.51 Aligned_cols=99 Identities=14% Similarity=0.115 Sum_probs=59.9
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC----ccHHHHH
Q 014568 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS----IDVASIV 102 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~----~e~~~L~ 102 (422)
....|+||+.+... +..+.+-+.|+++|+++++..+.... .+ ......||.+||.+.+..-.... .+.+.|.
T Consensus 5 ~~~~~vlvi~h~~~--~~~g~l~~~l~~~g~~~~v~~~~~~~-~~-p~~l~~~dgvii~Ggp~~~~d~~~wi~~~~~~i~ 80 (239)
T PRK06490 5 RDKRPVLIVLHQER--STPGRVGQLLQERGYPLDIRRPRLGD-PL-PDTLEDHAGAVIFGGPMSANDPDDFIRREIDWIS 80 (239)
T ss_pred CCCceEEEEecCCC--CCChHHHHHHHHCCCceEEEeccCCC-CC-CCcccccCEEEEECCCCCCCCCchHHHHHHHHHH
Confidence 34679999988653 44456888999999999986544321 11 12235689999988764321110 1234455
Q ss_pred HHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceec
Q 014568 103 DFVDSGHDLI-VAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 103 ~Fi~~GGNlL-i~~~~~~~~~l~~ll~elGI~~~ 135 (422)
+.++.|--+| |-. +..-++..+|=.+.
T Consensus 81 ~~~~~~~PvLGIC~------G~Qlla~alGG~V~ 108 (239)
T PRK06490 81 VPLKENKPFLGICL------GAQMLARHLGARVA 108 (239)
T ss_pred HHHHCCCCEEEECH------hHHHHHHHcCCEee
Confidence 5667777766 332 45566667774443
No 38
>PF03358 FMN_red: NADPH-dependent FMN reductase; InterPro: IPR005025 NADPH-dependent FMN reductase (1.5.1.29 from EC) reduces FMN and also reduces riboflavin and FAD, although more slowly. Members of this entry catalyse the reaction NAD(P)H + FMN = NAD(P)(+) + FMNH(2).; PDB: 3SVL_B 3GFS_F 3GFQ_A 1NNI_1 2GSW_B 3GFR_D 1T0I_B 3D7N_A 2R97_A 3B6K_A ....
Probab=59.25 E-value=42 Score=29.19 Aligned_cols=112 Identities=12% Similarity=0.128 Sum_probs=67.9
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhCCceEEEeeCCCCCccccc-----------------cCccccCEEEEeCCCC
Q 014568 31 RVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQR-----------------YGQYLYDALVLFCPSV 89 (422)
Q Consensus 31 r~LVlld~~~~----~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~-----------------~g~~~yd~LVI~~p~~ 89 (422)
|+|++.-+... ...-..+.+.|+++|++++.....|-.+.... ..-..+|.+|+.+|.-
T Consensus 2 kilii~gS~r~~~~t~~l~~~~~~~l~~~g~e~~~i~l~~~~~p~~~~~~~~~~~~~d~~~~~~~~l~~aD~iI~~sP~y 81 (152)
T PF03358_consen 2 KILIINGSPRKNSNTRKLAEAVAEQLEEAGAEVEVIDLADYPLPCCDGDFECPCYIPDDVQELYDKLKEADGIIFASPVY 81 (152)
T ss_dssp EEEEEESSSSTTSHHHHHHHHHHHHHHHTTEEEEEEECTTSHCHHHHHHHHHTGCTSHHHHHHHHHHHHSSEEEEEEEEB
T ss_pred EEEEEECcCCCCCHHHHHHHHHHHHHHHcCCEEEEEeccccchhhcccccccccCCcHHHHHHHhceecCCeEEEeecEE
Confidence 66777755432 22333577888889999998766654222211 1126679999999976
Q ss_pred CCCCCCccHHHHHHHHH-------CCCcEEEE-eCCC------CcHHHHHHHHHcCceecCCCCeEEEe
Q 014568 90 ERFGGSIDVASIVDFVD-------SGHDLIVA-ADSN------ASDLIREVATECGVDFDEDPAAMVID 144 (422)
Q Consensus 90 ~~~~~~~e~~~L~~Fi~-------~GGNlLi~-~~~~------~~~~l~~ll~elGI~~~~~~~~~VvD 144 (422)
.. +-+-..+.+.|.+. +|.-+.++ .+.+ ....++.++..+|....|. +...++
T Consensus 82 ~~-~~s~~lK~~lD~~~~~~~~~~~~K~~~~i~~~g~~~g~~~~~~~l~~~~~~~~~~~~~~-~~~~~~ 148 (152)
T PF03358_consen 82 NG-SVSGQLKNFLDRLSCWFRRALRGKPVAIIAVGGGRRGGLRALEQLRQILDYLGMIVVPS-GVFAVS 148 (152)
T ss_dssp TT-BE-HHHHHHHHTHHHTHTTTTTTSEEEEEEEESSSSTTHHHHHHHHHHHHHTTBEEECC-SEEEET
T ss_pred cC-cCChhhhHHHHHhccccccccCCCEEEEEEEecCCcHHHHHHHHHHHHHHHCCCEEcCC-cEEEEe
Confidence 42 11235566777664 23333333 2221 1468899999999999986 554443
No 39
>PRK07053 glutamine amidotransferase; Provisional
Probab=58.56 E-value=64 Score=30.98 Aligned_cols=97 Identities=10% Similarity=0.147 Sum_probs=59.3
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC------ccHHHHHH
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS------IDVASIVD 103 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~------~e~~~L~~ 103 (422)
+|+||+--. ..+....+.+.|+.+|+++++..+.+..... -....||.|||...+....... .+.+.|.+
T Consensus 3 ~~ilviqh~--~~e~~g~i~~~L~~~g~~~~v~~~~~~~~~~--~~~~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~ 78 (234)
T PRK07053 3 KTAVAIRHV--AFEDLGSFEQVLGARGYRVRYVDVGVDDLET--LDALEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQ 78 (234)
T ss_pred ceEEEEECC--CCCCChHHHHHHHHCCCeEEEEecCCCccCC--CCccCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHH
Confidence 466777543 3355567999999999999986554332211 1224689999988544322111 13356667
Q ss_pred HHHCCCcEE-EEeCCCCcHHHHHHHHHcCceecC
Q 014568 104 FVDSGHDLI-VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 104 Fi~~GGNlL-i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
+++.|.-+| |-. +..-++..+|-.+.+
T Consensus 79 ~~~~~~PvlGIC~------G~Qlla~alGg~V~~ 106 (234)
T PRK07053 79 RLAAGLPTLGICL------GAQLIARALGARVYP 106 (234)
T ss_pred HHHCCCCEEEECc------cHHHHHHHcCCcEec
Confidence 777887777 332 345677777766555
No 40
>PRK03767 NAD(P)H:quinone oxidoreductase; Provisional
Probab=57.39 E-value=91 Score=28.89 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=60.9
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHh-CCceEEEeeCCCCCcc-c--------------c-ccCccccCEEEEeCCCCCC
Q 014568 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNIG-L--------------Q-RYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 31 r~LVlld~~~--~~~~~S~f~~~L~~-rG~~v~~~~~~d~~l~-L--------------~-~~g~~~yd~LVI~~p~~~~ 91 (422)
|+||++.+.. .+..-..+.+.+++ .|.+++.....+.... + . ...-..||.||+-+|.--
T Consensus 3 kilIvy~S~~G~T~~lA~~ia~g~~~~~G~ev~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsPty~- 81 (200)
T PRK03767 3 KVLVLYYSMYGHIETMAEAVAEGAREVAGAEVTIKRVPETVPEEVAKKAGGKTDQAAPVATPDELADYDAIIFGTPTRF- 81 (200)
T ss_pred eEEEEEcCCCCHHHHHHHHHHHHHhhcCCcEEEEEeccccCCHHHHHhcCCCcccCCCccCHHHHHhCCEEEEEecccC-
Confidence 7899997752 23333457777887 8999986644322100 0 0 122367899999999753
Q ss_pred CCCCccHHHHHHHHHCC----------CcEE-EEeCC-----CC---cHHHHHHHHHcCceecCC
Q 014568 92 FGGSIDVASIVDFVDSG----------HDLI-VAADS-----NA---SDLIREVATECGVDFDED 137 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~G----------GNlL-i~~~~-----~~---~~~l~~ll~elGI~~~~~ 137 (422)
+ . -...++.|+|.- |... +.+.. +. ...++.++.++|+.+-+.
T Consensus 82 -g-~-~~~~lk~fld~~~~~~~~~~l~gK~~~~f~s~g~~~Gg~~~~l~~l~~~~~~~gm~vv~~ 143 (200)
T PRK03767 82 -G-N-MAGQMRNFLDQTGGLWAKGALVGKVGSVFTSTGTQHGGQETTITSTHTTLLHHGMVIVGL 143 (200)
T ss_pred -C-C-chHHHHHHHHHhccccccCCccCCEEEEEEeCCCCCCChHHHHHHHHHHHHHcCCEEeCC
Confidence 3 2 345677777763 3333 33332 12 245666668999988775
No 41
>PRK07308 flavodoxin; Validated
Probab=56.66 E-value=1.2e+02 Score=26.30 Aligned_cols=102 Identities=7% Similarity=-0.007 Sum_probs=57.1
Q ss_pred eEEEEEcCcc-c-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHC
Q 014568 31 RVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~~-~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~ 107 (422)
++.|+|.+.. . +.-=....+.|+++|++++....++.+. ..-..||.+|+.+|... .+. .-+...+.+.+..
T Consensus 3 ~~~IvY~S~tGnTe~iA~~ia~~l~~~g~~~~~~~~~~~~~----~~l~~~d~vi~g~~t~g-~G~~p~~~~~fl~~l~~ 77 (146)
T PRK07308 3 LAKIVYASMTGNTEEIADIVADKLRELGHDVDVDECTTVDA----SDFEDADIAIVATYTYG-DGELPDEIVDFYEDLAD 77 (146)
T ss_pred eEEEEEECCCchHHHHHHHHHHHHHhCCCceEEEecccCCH----hHhccCCEEEEEeCccC-CCCCCHHHHHHHHHHhc
Confidence 5778887642 2 2222346678888999887654443321 12256799998888653 111 1134444554532
Q ss_pred C---C-cEEEEeCCC--------CcHHHHHHHHHcCceecCC
Q 014568 108 G---H-DLIVAADSN--------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 108 G---G-NlLi~~~~~--------~~~~l~~ll~elGI~~~~~ 137 (422)
- | .+.+.+..+ ..+.+...+.++|...-..
T Consensus 78 ~~l~~k~~~vfG~Gd~~y~~~~~a~~~~~~~l~~~g~~~~~~ 119 (146)
T PRK07308 78 LDLSGKIYGVVGSGDTFYDYFCKSVDDFEAQFALTGATKGAE 119 (146)
T ss_pred CCCCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHHcCCeEccC
Confidence 2 3 333443311 1356778888899888654
No 42
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=56.58 E-value=52 Score=31.61 Aligned_cols=73 Identities=12% Similarity=0.111 Sum_probs=44.0
Q ss_pred cchhHHHHHHHhCCceEEEeeCCCCC----------------------------------ccccccCccccCEEEEeCCC
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLADDPN----------------------------------IGLQRYGQYLYDALVLFCPS 88 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~~d~~----------------------------------l~L~~~g~~~yd~LVI~~p~ 88 (422)
.....-.+-|++.||+|++.+++... ..+.+-....||.|+|-...
T Consensus 25 ~E~~~p~~~l~~aG~~VdiaS~~g~~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~dv~~~dYDav~iPGG~ 104 (231)
T cd03147 25 SEALHPFNVFREAGFEVDFVSETGTFGFDDHSLDPDFLNGEDLEVFSNKDSDFWKKLKNIKKADEVNPDDYGIFFVAGGH 104 (231)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCCCCCCccccccccCCHHHHHHHhcchHHHHHHHhccCChhHCCHhhCcEEEECCCC
Confidence 45566788899999999998775320 11112234689999886652
Q ss_pred C--CCCCCCccH-HHHHHHHHCCCcEEEEeC
Q 014568 89 V--ERFGGSIDV-ASIVDFVDSGHDLIVAAD 116 (422)
Q Consensus 89 ~--~~~~~~~e~-~~L~~Fi~~GGNlLi~~~ 116 (422)
. ..+..+-+. +.|.+|.++|+ ++-+.-
T Consensus 105 g~~~dl~~~~~l~~ll~~f~~~gK-~iaAIC 134 (231)
T cd03147 105 GTLFDFPHATNLQKIAQQIYANGG-VVAAVC 134 (231)
T ss_pred chhhhcccCHHHHHHHHHHHHcCC-EEEEEC
Confidence 2 235444344 45666777665 554433
No 43
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=53.72 E-value=92 Score=28.36 Aligned_cols=101 Identities=16% Similarity=0.165 Sum_probs=65.9
Q ss_pred EcCccc-ccchh---HHHHHHHhCCceEEEeeCCCCCcccc-ccCccccCEEEEeCCCCCCCCC--C----ccHHHHHHH
Q 014568 36 VDDFAI-KSSHS---LYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGG--S----IDVASIVDF 104 (422)
Q Consensus 36 ld~~~~-~~~~S---~f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~~~yd~LVI~~p~~~~~~~--~----~e~~~L~~F 104 (422)
+|...+ ...|. .-.+.|++.|-.|-+ ..|-+++.-. ......||.+|..=|-.-.... . ...+-|.+|
T Consensus 29 ~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~-~VDat~l~~~~~~~~~~FDrIiFNFPH~G~~~~~~~~~i~~nr~Ll~~F 107 (166)
T PF10354_consen 29 YDSEEELLQKYPDAEENLEELRELGVTVLH-GVDATKLHKHFRLKNQRFDRIIFNFPHVGGGSEDGKRNIRLNRELLRGF 107 (166)
T ss_pred cCchHHHHHhcccHHHHHHHHhhcCCcccc-CCCCCcccccccccCCcCCEEEEeCCCCCCCccchhHHHHHHHHHHHHH
Confidence 466543 46666 678889999988875 3343333221 2234678999988885531111 1 233567788
Q ss_pred HHC-------CCcEEEEeCCCCc---HHHHHHHHHcCceecCC
Q 014568 105 VDS-------GHDLIVAADSNAS---DLIREVATECGVDFDED 137 (422)
Q Consensus 105 i~~-------GGNlLi~~~~~~~---~~l~~ll~elGI~~~~~ 137 (422)
+.+ +|.|.|+.-.+.+ =+|..++++-|+.+...
T Consensus 108 f~Sa~~~L~~~G~IhVTl~~~~py~~W~i~~lA~~~gl~l~~~ 150 (166)
T PF10354_consen 108 FKSASQLLKPDGEIHVTLKDGQPYDSWNIEELAAEAGLVLVRK 150 (166)
T ss_pred HHHHHHhcCCCCEEEEEeCCCCCCccccHHHHHHhcCCEEEEE
Confidence 776 9999999866544 27889999988887664
No 44
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=53.25 E-value=53 Score=30.26 Aligned_cols=90 Identities=17% Similarity=0.182 Sum_probs=50.8
Q ss_pred EEEEcCcccccchh-HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHCCCc
Q 014568 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDSGHD 110 (422)
Q Consensus 33 LVlld~~~~~~~~S-~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~GGN 110 (422)
+.++|+. ++|+ .+.+.|+++|+++.....++.+ +.......+|.|||.+...+ ... ..+.+.|.++ +++--
T Consensus 2 il~id~~---dsft~~~~~~l~~~g~~v~v~~~~~~~--~~~~~~~~~d~iilsgGpg~-p~~~~~~~~~i~~~-~~~~P 74 (188)
T TIGR00566 2 VLMIDNY---DSFTYNLVQYFCELGAEVVVKRNDSLT--LQEIEALLPLLIVISPGPCT-PNEAGISLEAIRHF-AGKLP 74 (188)
T ss_pred EEEEECC---cCHHHHHHHHHHHcCCceEEEECCCCC--HHHHHhcCCCEEEEcCCCCC-hhhcchhHHHHHHh-ccCCC
Confidence 4556764 3333 4778899999999876545432 33333345789888766644 221 2234444444 54444
Q ss_pred EE-EEeCCCCcHHHHHHHHHcCceec
Q 014568 111 LI-VAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 111 lL-i~~~~~~~~~l~~ll~elGI~~~ 135 (422)
+| |- -+..-++..+|=++.
T Consensus 75 vLGIC------~G~Qll~~~~GG~v~ 94 (188)
T TIGR00566 75 ILGVC------LGHQAMGQAFGGDVV 94 (188)
T ss_pred EEEEC------HHHHHHHHHcCCEEe
Confidence 44 22 255667777774443
No 45
>PF06051 DUF928: Domain of Unknown Function (DUF928); InterPro: IPR010328 This is a family of uncharacterised bacterial proteins.
Probab=52.76 E-value=26 Score=32.74 Aligned_cols=41 Identities=20% Similarity=0.489 Sum_probs=31.8
Q ss_pred eeecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEe
Q 014568 316 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 316 w~P~~~~d~QlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
++|+...+.. ||+..|+ .++-.|.++|.+|++-||..+.+-
T Consensus 41 YvP~~~~~~~-eF~L~d~--------~~~~iy~~~~~l~~~~GIv~i~LP 81 (189)
T PF06051_consen 41 YVPYTSAETV-EFVLQDE--------QGNPIYQTTFPLPQQPGIVSITLP 81 (189)
T ss_pred EecCCCCcce-EEEEecC--------CCCEEeEEEEecCCCCCEEEEECC
Confidence 5677755444 9986664 245689999999999999999887
No 46
>PF08468 MTS_N: Methyltransferase small domain N-terminal; InterPro: IPR013675 This domain is found to the N terminus of the methyltransferase small domain (IPR007848 from INTERPRO) in bacterial proteins []. ; GO: 0008990 rRNA (guanine-N2-)-methyltransferase activity, 0006364 rRNA processing; PDB: 2PJD_A.
Probab=50.06 E-value=5.2 Score=36.21 Aligned_cols=55 Identities=15% Similarity=0.340 Sum_probs=32.8
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCc-HHHHHHHHHcC
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS-DLIREVATECG 131 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~-~~l~~ll~elG 131 (422)
...||.+|++=||.|... ..=...|..-+..||.|+|+++...+ +++..+++++|
T Consensus 67 ~~~~D~vvly~PKaK~e~-~~lL~~l~~~L~~g~~i~vVGEnk~GIkSa~K~L~~~~ 122 (155)
T PF08468_consen 67 DQDFDTVVLYWPKAKAEA-QYLLANLLSHLPPGTEIFVVGENKGGIKSAEKQLAPYG 122 (155)
T ss_dssp HTT-SEEEEE--SSHHHH-HHHHHHHHTTS-TT-EEEEEEEGGGTGGGHHHHHTTTS
T ss_pred ccCCCEEEEEccCcHHHH-HHHHHHHHHhCCCCCEEEEEecCcccHHHHHHHHHhhC
Confidence 467999999999988331 22223444445569999999986442 46667777774
No 47
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=49.47 E-value=63 Score=29.71 Aligned_cols=92 Identities=14% Similarity=0.136 Sum_probs=54.4
Q ss_pred EEEEcCcccccchh-HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcE
Q 014568 33 LVLVDDFAIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (422)
Q Consensus 33 LVlld~~~~~~~~S-~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNl 111 (422)
+.|+|+. ++|+ .+.+.|+.+|++++....+.. .+..-....+|.|||.+.....-- ......+.+.++++.-+
T Consensus 2 il~id~~---dsf~~nl~~~l~~~~~~~~v~~~~~~--~~~~~~~~~~~~iilsgGP~~~~~-~~~~~~~i~~~~~~~Pi 75 (191)
T PRK06774 2 LLLIDNY---DSFTYNLYQYFCELGTEVMVKRNDEL--QLTDIEQLAPSHLVISPGPCTPNE-AGISLAVIRHFADKLPI 75 (191)
T ss_pred EEEEECC---CchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHhcCCCeEEEcCCCCChHh-CCCchHHHHHhcCCCCE
Confidence 4566775 3333 478889999999997654433 232223346799998887654221 11233444556666555
Q ss_pred E-EEeCCCCcHHHHHHHHHcCceecC
Q 014568 112 I-VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 112 L-i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
| |- -+.+.++..+|=.+.+
T Consensus 76 LGIC------~G~Qlla~~~GG~v~~ 95 (191)
T PRK06774 76 LGVC------LGHQALGQAFGARVVR 95 (191)
T ss_pred EEEC------HHHHHHHHHhCCEEEe
Confidence 5 32 3566777778755544
No 48
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=48.58 E-value=1.9e+02 Score=25.39 Aligned_cols=84 Identities=21% Similarity=0.222 Sum_probs=46.3
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------cccc------cCccccCEEEEeCCCC-CCCCC-Cc
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GLQR------YGQYLYDALVLFCPSV-ERFGG-SI 96 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------~L~~------~g~~~yd~LVI~~p~~-~~~~~-~~ 96 (422)
|+.+++-+.-+..++....+-|+..||++...+++...+ .+.. -....||.|+|..... +.+.. ..
T Consensus 1 ~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~vvv~Gg~~~~~~~~~~~ 80 (166)
T TIGR01382 1 KLLVLTTDEFEDSELLYPLDRLREAGHEVDTVSKEAGTTVGKHGYSVTVDATIDEVNPEEYDALVIPGGRAPEYLRLNNK 80 (166)
T ss_pred CEEEEecCCchHHHHHHHHHHHHHCCCEEEEEecCCCceeccCCceeeccCChhhCCHHHCcEEEECCCCCHHHhccCHH
Confidence 455666554456667778888999999998876543221 1211 1123689988866422 11111 11
Q ss_pred cHHHHHHHHHCCCcEEEEe
Q 014568 97 DVASIVDFVDSGHDLIVAA 115 (422)
Q Consensus 97 e~~~L~~Fi~~GGNlLi~~ 115 (422)
-.+.|+++.++|. .+.+.
T Consensus 81 l~~~l~~~~~~~~-~i~~i 98 (166)
T TIGR01382 81 AVRLVREFVEKGK-PVAAI 98 (166)
T ss_pred HHHHHHHHHHcCC-EEEEE
Confidence 2345556665555 44343
No 49
>cd08374 C2F_Ferlin C2 domain sixth repeat in Ferlin. Ferlins are involved in vesicle fusion events. Ferlins and other proteins, such as Synaptotagmins, are implicated in facilitating the fusion process when cell membranes fuse together. There are six known human Ferlins: Dysferlin (Fer1L1), Otoferlin (Fer1L2), Myoferlin (Fer1L3), Fer1L4, Fer1L5, and Fer1L6. Defects in these genes can lead to a wide range of diseases including muscular dystrophy (dysferlin), deafness (otoferlin), and infertility (fer-1, fertilization factor-1). Structurally they have 6 tandem C2 domains, designated as (C2A-C2F) and a single C-terminal transmembrane domain, though there is a new study that disputes this and claims that there are actually 7 tandem C2 domains with another C2 domain inserted between C2D and C2E. In a subset of them (Dysferlin, Myoferlin, and Fer1) there is an additional conserved domain called DysF. C2 domains fold into an 8-standed beta-sandwich that can adopt 2 structural arrangemen
Probab=48.08 E-value=30 Score=30.55 Aligned_cols=39 Identities=18% Similarity=0.261 Sum_probs=25.5
Q ss_pred EEeCceEeeccccCCCceEEE--EEecCCceeeeEEEEeee
Q 014568 329 YMMSPYVLKTLSTDQKGHYSA--EFKVPDVYGVFQFKVEYQ 367 (422)
Q Consensus 329 ~mldPy~R~~l~~~~~~~y~~--~f~~PD~hGvf~f~v~Y~ 367 (422)
.|.|||++..|.+.+....+| ..+-.|--|+|+.+.-|.
T Consensus 23 ~~sD~yVK~~L~~~~~~kqkTDVHyrslnG~~~FNwRfvF~ 63 (133)
T cd08374 23 KMSDIYVKGWLDGLEEDKQKTDVHYRSLDGEGNFNWRFVFP 63 (133)
T ss_pred cccCeEEEEEEccCcccccccceEEecCCCCcEEeEEEEEe
Confidence 499999999998753222233 555556667777665554
No 50
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=47.39 E-value=73 Score=29.63 Aligned_cols=94 Identities=15% Similarity=0.121 Sum_probs=53.3
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL 112 (422)
++++|++ +.-+| .+.+.|+++|+++.....+.. .+.......+|.|||.+.+..-.......+.+..+ +++--+|
T Consensus 2 il~idn~-dsft~-nl~~~l~~~g~~v~v~~~~~~--~~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~-~~~~PvL 76 (195)
T PRK07649 2 ILMIDNY-DSFTF-NLVQFLGELGQELVVKRNDEV--TISDIENMKPDFLMISPGPCSPNEAGISMEVIRYF-AGKIPIF 76 (195)
T ss_pred EEEEeCC-CccHH-HHHHHHHHCCCcEEEEeCCCC--CHHHHhhCCCCEEEECCCCCChHhCCCchHHHHHh-cCCCCEE
Confidence 4667876 22233 388899999999998754433 22222234679888887765422112233444443 3343444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecCC
Q 014568 113 -VAADSNASDLIREVATECGVDFDED 137 (422)
Q Consensus 113 -i~~~~~~~~~l~~ll~elGI~~~~~ 137 (422)
|- =+.+.++..+|-++.+.
T Consensus 77 GIC------lG~Qlla~~lGg~V~~~ 96 (195)
T PRK07649 77 GVC------LGHQSIAQVFGGEVVRA 96 (195)
T ss_pred EEc------HHHHHHHHHcCCEEeeC
Confidence 22 35667777777766553
No 51
>CHL00101 trpG anthranilate synthase component 2
Probab=47.26 E-value=70 Score=29.47 Aligned_cols=93 Identities=9% Similarity=-0.002 Sum_probs=54.1
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL 112 (422)
+.++|.. +.-+| ...+.|+++|.++.....+.. .+.......+|.|||.+.... .........+.+.+++|.-+|
T Consensus 2 iliid~~-dsft~-~l~~~l~~~g~~~~v~~~~~~--~~~~~~~~~~dgiiisgGpg~-~~~~~~~~~i~~~~~~~~PiL 76 (190)
T CHL00101 2 ILIIDNY-DSFTY-NLVQSLGELNSDVLVCRNDEI--DLSKIKNLNIRHIIISPGPGH-PRDSGISLDVISSYAPYIPIL 76 (190)
T ss_pred EEEEECC-CchHH-HHHHHHHhcCCCEEEEECCCC--CHHHHhhCCCCEEEECCCCCC-hHHCcchHHHHHHhcCCCcEE
Confidence 3455654 22222 377789999999987544332 222222345799998877654 222223456777787776666
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 014568 113 -VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 113 -i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
|-. +...++..+|-++.+
T Consensus 77 GICl------G~Qlla~~~Gg~V~~ 95 (190)
T CHL00101 77 GVCL------GHQSIGYLFGGKIIK 95 (190)
T ss_pred EEch------hHHHHHHHhCCEEEE
Confidence 332 455666667665554
No 52
>PRK00170 azoreductase; Reviewed
Probab=47.11 E-value=1.7e+02 Score=26.68 Aligned_cols=102 Identities=11% Similarity=0.124 Sum_probs=58.4
Q ss_pred eEEEEEcCcccc-----cchhHHHHHHHhC--CceEEEeeCCCCCccccc-----------------------------c
Q 014568 31 RVLVLVDDFAIK-----SSHSLYFGSLTSR--GFQLEFKLADDPNIGLQR-----------------------------Y 74 (422)
Q Consensus 31 r~LVlld~~~~~-----~~~S~f~~~L~~r--G~~v~~~~~~d~~l~L~~-----------------------------~ 74 (422)
|+|+|.-+.... ..-..|.+.|+++ |++++.....+..+.... .
T Consensus 3 kil~i~gSpr~~~s~s~~l~~~~~~~l~~~~~~~~v~~~dL~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~l~~ 82 (201)
T PRK00170 3 KVLVIKSSILGDYSQSMQLGDAFIEAYKEAHPDDEVTVRDLAAEPIPVLDGEVVGALGKSAETLTPRQQEAVALSDELLE 82 (201)
T ss_pred eEEEEecCCCCCCcHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHHH
Confidence 677777554322 1222578889988 999998765554332110 0
Q ss_pred CccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-------------------CC-cEEEEeCCC----------CcHHHH
Q 014568 75 GQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-------------------GH-DLIVAADSN----------ASDLIR 124 (422)
Q Consensus 75 g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-------------------GG-NlLi~~~~~----------~~~~l~ 124 (422)
.....|.|||..|--- ++ =+..|+.|+|. .| .+++++..+ ....++
T Consensus 83 ~i~~AD~iV~~sP~y~-~~---~pa~LK~~iDrv~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~~~ 158 (201)
T PRK00170 83 EFLAADKIVIAAPMYN-FS---IPTQLKAYIDLIARAGKTFRYTENGPVGLVTGKKALLITSRGGIHKDGPTDMGVPYLK 158 (201)
T ss_pred HHHHCCEEEEeecccc-cC---CcHHHHHHHHhheeCCceEEecCCCCccCcCCcEEEEEEeCCCCCCCCCcchHHHHHH
Confidence 1244699999999654 32 33456666654 22 344433211 134567
Q ss_pred HHHHHcCceecC
Q 014568 125 EVATECGVDFDE 136 (422)
Q Consensus 125 ~ll~elGI~~~~ 136 (422)
.+++-+|+....
T Consensus 159 ~~~~~~G~~~~~ 170 (201)
T PRK00170 159 TFLGFIGITDVE 170 (201)
T ss_pred HHHHhcCCCceE
Confidence 788888887655
No 53
>PLN02931 nucleoside diphosphate kinase family protein
Probab=47.11 E-value=43 Score=31.07 Aligned_cols=102 Identities=18% Similarity=0.210 Sum_probs=58.7
Q ss_pred HHHHhhhhccccc---cCCCCCCeEEEEEcCccccc-chhHHHHHHHhCCceEEEeeCCCCCccccccC-cccc-CEEEE
Q 014568 11 ATSLIPLFSVAFS---PENPTDRRVLVLVDDFAIKS-SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVL 84 (422)
Q Consensus 11 ~~~~~~~~~~~~~---~~~~~~~r~LVlld~~~~~~-~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~y-d~LVI 84 (422)
++||++.+.|--. .......|||+++-++..+. .-+...+.++++||+|.-. ..+.|.+.. +.-| +|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~----K~~~Lt~e~a~~fY~~h--- 80 (177)
T PLN02931 8 PLFLLLLASFPIRCSSSGASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKE----MTTQLDEDRASLFYAEH--- 80 (177)
T ss_pred HHHHHHHcccccccCCCCCCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEee----eeecCCHHHHHHHHHHh---
Confidence 4456666654333 33334679999998877643 3468999999999999853 112233221 1223 22
Q ss_pred eCCCCCCCCCCccHHHHHHHHHCCCcEE-EEeCCCCcHHHHHHH
Q 014568 85 FCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIREVA 127 (422)
Q Consensus 85 ~~p~~~~~~~~~e~~~L~~Fi~~GGNlL-i~~~~~~~~~l~~ll 127 (422)
-+ .---+.|++|+-.|--+. ++.+++.-+.+|.++
T Consensus 81 -------~g-k~ff~~Lv~~mtSGP~vam~L~g~naV~~~R~li 116 (177)
T PLN02931 81 -------SS-RSFFPSLVKYMTSGPVLVMVLEKENAVSDWRTLI 116 (177)
T ss_pred -------CC-CccHHHHHHHHHhCCeEEEEEecCCHHHHHHHHh
Confidence 11 124567999998765433 334444334556665
No 54
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=46.53 E-value=1.4e+02 Score=26.93 Aligned_cols=84 Identities=15% Similarity=0.182 Sum_probs=52.8
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCcccc-ccCc----cccCEEEEeCCCCCCCCCCccHHHHH
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQ----YLYDALVLFCPSVERFGGSIDVASIV 102 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~----~~yd~LVI~~p~~~~~~~~~e~~~L~ 102 (422)
.....+|..|..= .==-.+++.|+..||+|+....+|- +.|. +.|. ..+.-.||..= -+.+.+..+.|.
T Consensus 24 ~~~~~~vyksPnC--GCC~~w~~~mk~~Gf~Vk~~~~~d~-~alK~~~gIp~e~~SCHT~VI~Gy---~vEGHVPa~aI~ 97 (149)
T COG3019 24 QATEMVVYKSPNC--GCCDEWAQHMKANGFEVKVVETDDF-LALKRRLGIPYEMQSCHTAVINGY---YVEGHVPAEAIA 97 (149)
T ss_pred ceeeEEEEeCCCC--ccHHHHHHHHHhCCcEEEEeecCcH-HHHHHhcCCChhhccccEEEEcCE---EEeccCCHHHHH
Confidence 3445555555431 1112589999999999999877764 2332 3444 44555555332 234688999999
Q ss_pred HHHHCCCcEEEEeCC
Q 014568 103 DFVDSGHDLIVAADS 117 (422)
Q Consensus 103 ~Fi~~GGNlLi~~~~ 117 (422)
+|++++=++-=++-|
T Consensus 98 ~ll~~~pd~~GlavP 112 (149)
T COG3019 98 RLLAEKPDAKGLAVP 112 (149)
T ss_pred HHHhCCCCcceecCC
Confidence 999988877733333
No 55
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=46.53 E-value=1.2e+02 Score=27.37 Aligned_cols=36 Identities=19% Similarity=0.374 Sum_probs=27.9
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCC
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
|++|++.+..+..+.....+.|+..|++++..+++.
T Consensus 1 kv~il~~~g~~~~e~~~p~~~l~~ag~~v~~vs~~~ 36 (180)
T cd03169 1 KILILTGDFVEDYEVMVPFQALQEVGHEVDVVAPGK 36 (180)
T ss_pred CEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 567777666677778888889999999999886654
No 56
>PRK04155 chaperone protein HchA; Provisional
Probab=46.27 E-value=94 Score=31.02 Aligned_cols=38 Identities=16% Similarity=0.267 Sum_probs=27.6
Q ss_pred CCeEEEEEcCcccc--------------cchhHHHHHHHhCCceEEEeeCCC
Q 014568 29 DRRVLVLVDDFAIK--------------SSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 29 ~~r~LVlld~~~~~--------------~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
++|+|+++.+.... ...-....-|++.||+|++.+++.
T Consensus 49 ~kkiL~v~t~~~~~~~~~g~~~~tG~~~~E~~~P~~~L~~AG~eVdiAS~~G 100 (287)
T PRK04155 49 GKKILMIAADERYLPMDNGKLFSTGNHPVETLLPMYHLHKAGFEFDVATLSG 100 (287)
T ss_pred CCeEEEEEcCcccccCCCCCcCCCCccHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 57999999754321 123356888999999999987754
No 57
>TIGR01754 flav_RNR ribonucleotide reductase-associated flavodoxin, putative. This model represents a family of proteins found immediately downstream of ribonucleotide reductase genes in Xyella fastidiosa and some Gram-positive bacteria. It appears to be a highly divergent flavodoxin of the short chain type, more like the flavodoxins of the sulfate-reducing genus Desulfovibrio than like the NifF flavodoxins associated with nitrogen fixation.
Probab=45.81 E-value=2e+02 Score=24.85 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=49.5
Q ss_pred eEEEEEcCcc-c-ccchhHHHHHHHhCCceEEE-eeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-
Q 014568 31 RVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEF-KLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (422)
Q Consensus 31 r~LVlld~~~-~-~~~~S~f~~~L~~rG~~v~~-~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~- 106 (422)
|+||+|.+.. . +.-=....+.|+.+|++++. ....+ +.-.......||.+||.+|..- .+ . -+..+.+|++
T Consensus 2 ~i~IiY~S~tGnTe~iA~~ia~~l~~~g~~v~~~~~~~~--~~~~~~~~~~~d~iilgs~t~~-~g-~-~p~~~~~fl~~ 76 (140)
T TIGR01754 2 RILLAYLSLSGNTEEVAFMIQDYLQKDGHEVDILHRIGT--LADAPLDPENYDLVFLGTWTWE-RG-R-TPDEMKDFIAE 76 (140)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHhhCCeeEEecccccc--cccCcCChhhCCEEEEEcCeeC-CC-c-CCHHHHHHHHH
Confidence 6889997642 1 22223456778888998862 21111 1001112346899999888642 22 1 2234444444
Q ss_pred ---CCCcEEEEeCC--CCc-----HHHHHHHHHcC
Q 014568 107 ---SGHDLIVAADS--NAS-----DLIREVATECG 131 (422)
Q Consensus 107 ---~GGNlLi~~~~--~~~-----~~l~~ll~elG 131 (422)
+|.++.+.+.. .-. ..++.+-+.|.
T Consensus 77 l~~~~k~~avfgtgd~~~~~~~f~~a~~~~~~~l~ 111 (140)
T TIGR01754 77 LGYKPSNVAIFGTGETQWGDDLYCGAVDRLAHFFG 111 (140)
T ss_pred hcccCCEEEEEEcCCCCcCcchHhHHHHHHHHHHc
Confidence 35555555432 211 46666666653
No 58
>PF03698 UPF0180: Uncharacterised protein family (UPF0180); InterPro: IPR005370 The members of this family are small uncharacterised proteins.
Probab=45.55 E-value=33 Score=27.69 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=29.1
Q ss_pred ccchhHHHHHHHhCCceEEEeeCCCCCcccccc-CccccCEEEEeCCCCC
Q 014568 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRY-GQYLYDALVLFCPSVE 90 (422)
Q Consensus 42 ~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~-g~~~yd~LVI~~p~~~ 90 (422)
.+..|...+.|+++||++... ... +-..+|++||-.-...
T Consensus 7 E~~Ls~v~~~L~~~GyeVv~l---------~~~~~~~~~daiVvtG~~~n 47 (80)
T PF03698_consen 7 EEGLSNVKEALREKGYEVVDL---------ENEQDLQNVDAIVVTGQDTN 47 (80)
T ss_pred cCCchHHHHHHHHCCCEEEec---------CCccccCCcCEEEEECCCcc
Confidence 456788999999999999863 222 2367899998765544
No 59
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=45.48 E-value=45 Score=28.44 Aligned_cols=83 Identities=16% Similarity=0.120 Sum_probs=48.3
Q ss_pred HHHHHHhCCceEEEeeCCCCCccc-cccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC-C-cEEEEeCCCCcHHHH
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIGL-QRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-H-DLIVAADSNASDLIR 124 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~L-~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G-G-NlLi~~~~~~~~~l~ 124 (422)
+...|+..||++.+..++.+.-.+ ..-.+...|.++|........ ...+.+.+=+.+- - ++.+..+...++...
T Consensus 19 ~~~~l~~~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~~~~~~~---~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~ 95 (122)
T cd02071 19 IARALRDAGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSSLSGGHM---TLFPEVIELLRELGAGDILVVGGGIIPPEDY 95 (122)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcccchhhH---HHHHHHHHHHHhcCCCCCEEEEECCCCHHHH
Confidence 556789999999997665442222 233346778888865543322 1335545545444 3 455444433344455
Q ss_pred HHHHHcCce
Q 014568 125 EVATECGVD 133 (422)
Q Consensus 125 ~ll~elGI~ 133 (422)
+.+.++||+
T Consensus 96 ~~~~~~G~d 104 (122)
T cd02071 96 ELLKEMGVA 104 (122)
T ss_pred HHHHHCCCC
Confidence 778889973
No 60
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=44.73 E-value=99 Score=25.48 Aligned_cols=70 Identities=21% Similarity=0.377 Sum_probs=0.0
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|.++.++-.+. ..+-.++.+.|++.|++++. |.++- +...+.+|+.+
T Consensus 29 ~g~~~~~lTNns--~~s~~~~~~~L~~~Gi~~~~------------------~~i~t------------s~~~~~~~l~~ 76 (101)
T PF13344_consen 29 RGKPVVFLTNNS--SRSREEYAKKLKKLGIPVDE------------------DEIIT------------SGMAAAEYLKE 76 (101)
T ss_dssp TTSEEEEEES-S--SS-HHHHHHHHHHTTTT--G------------------GGEEE------------HHHHHHHHHHH
T ss_pred cCCCEEEEeCCC--CCCHHHHHHHHHhcCcCCCc------------------CEEEC------------hHHHHHHHHHh
Q ss_pred ---CCcEEEEeCCCCcHHHHHHHHHcCce
Q 014568 108 ---GHDLIVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 108 ---GGNlLi~~~~~~~~~l~~ll~elGI~ 133 (422)
++++++++ .+.++..++++|++
T Consensus 77 ~~~~~~v~vlG----~~~l~~~l~~~G~e 101 (101)
T PF13344_consen 77 HKGGKKVYVLG----SDGLREELREAGFE 101 (101)
T ss_dssp HTTSSEEEEES-----HHHHHHHHHTTEE
T ss_pred cCCCCEEEEEc----CHHHHHHHHHcCCC
No 61
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=44.56 E-value=2e+02 Score=26.71 Aligned_cols=113 Identities=19% Similarity=0.366 Sum_probs=66.4
Q ss_pred ceEeCCceEEEEEEEEEeCCeeee--c--ccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEE---EEeee
Q 014568 295 IYRINDDLEYSVEIYEWSGTSWEP--Y--VSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQF---KVEYQ 367 (422)
Q Consensus 295 ~Y~i~d~v~y~i~i~e~~~~~w~P--~--~~~d~QlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f---~v~Y~ 367 (422)
.|-+.+.--|.|.|.. +.|.| | ..-.....+-+|+|.-..+. ....+ |-+.|.|.| .|.|+
T Consensus 46 iyN~G~~~A~dV~l~D---~~fp~~~F~lvsG~~s~~~~~i~pg~~vsh--------~~vv~-p~~~G~f~~~~a~VtY~ 113 (181)
T PF05753_consen 46 IYNVGSSAAYDVKLTD---DSFPPEDFELVSGSLSASWERIPPGENVSH--------SYVVR-PKKSGYFNFTPAVVTYR 113 (181)
T ss_pred EEECCCCeEEEEEEEC---CCCCccccEeccCceEEEEEEECCCCeEEE--------EEEEe-eeeeEEEEccCEEEEEE
Confidence 3556666666666654 55632 2 22346666777777654432 22333 777888876 57885
Q ss_pred ec-cceeeeeeeeEeecC---CCCCcccccccCCcchhhHHHHHHHHHhhheeeee
Q 014568 368 RL-GYTSLSLSKQIPVRP---YRHNEYERFLPAAYPYYGSAFSMMAGFFIFTIVHL 419 (422)
Q Consensus 368 R~-G~t~l~~~~~v~VR~---~~hdey~R~i~~a~pyy~s~~~~~~~~~~F~~~~l 419 (422)
.. |=.-+.....-+.++ ++-.+|.|-...++-.|....+|++..++|.++..
T Consensus 114 ~~~~~~~~~~a~Ss~~~~~~I~~~~~~~k~f~~~~~~w~~f~~~~~~~~~~p~ll~ 169 (181)
T PF05753_consen 114 DSEGAKELQVAYSSPPGEGDILAERDYDKKFSSHVMDWGAFAIMTLPVLLIPYLLW 169 (181)
T ss_pred CCCCCceeEEEEecCCCcceEEeccccchhhhhhHHHHHhHHHHHHHHHHHHHHhh
Confidence 54 212233333333333 44567888777778888887777777777765443
No 62
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=44.12 E-value=1.3e+02 Score=27.52 Aligned_cols=36 Identities=11% Similarity=0.054 Sum_probs=30.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLA 64 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~ 64 (422)
.+|++|++.+.-+..+.....+-|+..|+++++...
T Consensus 2 ~~~~~il~~~g~~~~e~~~p~~~l~~ag~~v~~~s~ 37 (196)
T PRK11574 2 SASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASV 37 (196)
T ss_pred CceEEEEeCCCcchhhHhHHHHHHHHCCCeEEEEEc
Confidence 368899998777778888999999999999998654
No 63
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=43.18 E-value=1.4e+02 Score=26.79 Aligned_cols=37 Identities=11% Similarity=0.175 Sum_probs=24.9
Q ss_pred HHHHHHHHCCCcEEEEeCCCC-cHHHHHHHHHcCceec
Q 014568 99 ASIVDFVDSGHDLIVAADSNA-SDLIREVATECGVDFD 135 (422)
Q Consensus 99 ~~L~~Fi~~GGNlLi~~~~~~-~~~l~~ll~elGI~~~ 135 (422)
+.+.+.+..||.+.+...... ...+..++++.|.+..
T Consensus 124 ~~~~~~Lk~gG~~~~~~~~~~~~~~~~~~l~~~gf~~~ 161 (179)
T TIGR00537 124 DELPEILKEGGRVQLIQSSLNGEPDTFDKLDERGFRYE 161 (179)
T ss_pred HhHHHhhCCCCEEEEEEeccCChHHHHHHHHhCCCeEE
Confidence 344567778998776654433 5677888888886543
No 64
>PRK10569 NAD(P)H-dependent FMN reductase; Provisional
Probab=43.02 E-value=1.6e+02 Score=27.33 Aligned_cols=113 Identities=13% Similarity=0.060 Sum_probs=63.2
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhCCceEEEeeCCCCCcc-cc------------ccCccccCEEEEeCCCCCCCC
Q 014568 31 RVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIG-LQ------------RYGQYLYDALVLFCPSVERFG 93 (422)
Q Consensus 31 r~LVlld~~~~----~~~~S~f~~~L~~rG~~v~~~~~~d~~l~-L~------------~~g~~~yd~LVI~~p~~~~~~ 93 (422)
|+|++.=+... +..-..+.+.|++.|++++.....+-.+. +. .......|.+||..|--. .+
T Consensus 2 kIl~I~GSpr~~S~t~~l~~~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~-~s 80 (191)
T PRK10569 2 RVITLAGSPRFPSRSSALLEYAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYK-AS 80 (191)
T ss_pred EEEEEEcCCCCCChHHHHHHHHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccC-CC
Confidence 45555544322 12233577788889999987644332111 11 111256799999999654 21
Q ss_pred CCccHHHHHHHHHC---CCc-EEEEeCCCC------c-HHHHHHHHHcCceecCCCCeEEEec
Q 014568 94 GSIDVASIVDFVDS---GHD-LIVAADSNA------S-DLIREVATECGVDFDEDPAAMVIDH 145 (422)
Q Consensus 94 ~~~e~~~L~~Fi~~---GGN-lLi~~~~~~------~-~~l~~ll~elGI~~~~~~~~~VvD~ 145 (422)
-+--.+.+.|++.. .|. +++++..+. . ..+|+++..+|....|. +..+.+.
T Consensus 81 ~pg~LKn~iD~l~~~~l~~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~-~~~~~~~ 142 (191)
T PRK10569 81 FSGALKTLLDLLPERALEHKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILH-GVFADDS 142 (191)
T ss_pred CCHHHHHHHHhCChhhhCCCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCc-eEEEech
Confidence 12234555555532 133 443332222 1 57889999999998887 6555553
No 65
>PF03633 Glyco_hydro_65C: Glycosyl hydrolase family 65, C-terminal domain ; InterPro: IPR005194 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This family of glycosyl hydrolases (GH65 from CAZY) contains this domain and includes vacuolar acid trehalase and maltose phosphorylases. Maltose phosphorylase (MP) is a dimeric enzyme that catalyzes the conversion of maltose and inorganic phosphate into beta-D-glucose-1-phosphate and glucose. The C-terminal domain forms a two layered jelly roll motif. This domain is situated at the base of the catalytic domain, however its function remains unknown [].; PDB: 1H54_A.
Probab=42.78 E-value=23 Score=25.74 Aligned_cols=34 Identities=12% Similarity=0.302 Sum_probs=25.0
Q ss_pred ecCCceeeeEEEEeeeeccceeeeeeeeEeecCC
Q 014568 352 KVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPY 385 (422)
Q Consensus 352 ~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~ 385 (422)
.||++..-++|++.||..=+..--.++.+.|+-.
T Consensus 2 ~LP~~w~~l~F~~~~rg~~l~v~i~~~~v~v~~~ 35 (54)
T PF03633_consen 2 RLPKQWSSLSFRLRYRGHWLEVEITHEKVTVTLL 35 (54)
T ss_dssp ---TT-SEEEEEEEETTEEEEEEEETTEEEEEEE
T ss_pred cCCCccCEeEEEEEECCEEEEEEEECCEEEEEEc
Confidence 5899999999999999988887777777777644
No 66
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=42.49 E-value=83 Score=29.61 Aligned_cols=92 Identities=17% Similarity=0.179 Sum_probs=53.8
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCc-
Q 014568 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHD- 110 (422)
Q Consensus 32 ~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGN- 110 (422)
-++++|+. +.-+| ++.+.|++.|.+++..-.+ .+++......++|+|||-|.+...-......+.|.+| .|+
T Consensus 3 ~IL~IDNy-DSFty-NLv~yl~~lg~~v~V~rnd--~~~~~~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~---~~~~ 75 (191)
T COG0512 3 MILLIDNY-DSFTY-NLVQYLRELGAEVTVVRND--DISLELIEALKPDAIVISPGPGTPKDAGISLELIRRF---AGRI 75 (191)
T ss_pred eEEEEECc-cchHH-HHHHHHHHcCCceEEEECC--ccCHHHHhhcCCCEEEEcCCCCChHHcchHHHHHHHh---cCCC
Confidence 35667774 33333 6788889999999876444 3344444456679988877655311112345566666 443
Q ss_pred -EE-EEeCCCCcHHHHHHHHHcCceecC
Q 014568 111 -LI-VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 111 -lL-i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
|| |-+ +-..++..||=++..
T Consensus 76 PiLGVCL------GHQai~~~fGg~V~~ 97 (191)
T COG0512 76 PILGVCL------GHQAIAEAFGGKVVR 97 (191)
T ss_pred CEEEECc------cHHHHHHHhCCEEEe
Confidence 44 333 345667777755544
No 67
>PRK11249 katE hydroperoxidase II; Provisional
Probab=41.84 E-value=1.4e+02 Score=34.03 Aligned_cols=106 Identities=12% Similarity=0.126 Sum_probs=64.1
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------ccc------ccCccccCEEEEeCCCC--CC
Q 014568 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GLQ------RYGQYLYDALVLFCPSV--ER 91 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------~L~------~~g~~~yd~LVI~~p~~--~~ 91 (422)
+..+.|+.||+.+-.+........+.|+..|.++.+..++...+ .+. .-..-.||.|+|..... +.
T Consensus 594 ~~~gRKIaILVaDG~d~~ev~~~~daL~~AGa~V~VVSp~~G~V~~s~G~~I~aD~t~~~~~Sv~FDAVvVPGG~~~~~~ 673 (752)
T PRK11249 594 DIKGRKVAILLNDGVDAADLLAILKALKAKGVHAKLLYPRMGEVTADDGTVLPIAATFAGAPSLTFDAVIVPGGKANIAD 673 (752)
T ss_pred CccccEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCEEecceeeccCCccCCCEEEECCCchhHHH
Confidence 34588999999877778888999999999999999886654322 111 11123699999965321 21
Q ss_pred CCCC-ccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce--ecCC
Q 014568 92 FGGS-IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVD--FDED 137 (422)
Q Consensus 92 ~~~~-~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~--~~~~ 137 (422)
+..+ .-.+-|.++.+.|. .+-+...+ ..+|.+.|+. .+++
T Consensus 674 L~~d~~al~fL~eaykHgK-~IAAiCaG-----~~LLaaAGL~~~~~~g 716 (752)
T PRK11249 674 LADNGDARYYLLEAYKHLK-PIALAGDA-----RKLKAALKLPDQGEEG 716 (752)
T ss_pred HhhCHHHHHHHHHHHHcCC-EEEEeCcc-----HHHHHhcCCCCCCCCe
Confidence 2111 11233555554454 44344333 2677889993 3554
No 68
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=41.69 E-value=2.2e+02 Score=30.40 Aligned_cols=106 Identities=6% Similarity=0.100 Sum_probs=63.0
Q ss_pred CCCeEEEEEcCc-c-cccchhHHHHHHHhC--CceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHH
Q 014568 28 TDRRVLVLVDDF-A-IKSSHSLYFGSLTSR--GFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (422)
Q Consensus 28 ~~~r~LVlld~~-~-~~~~~S~f~~~L~~r--G~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~ 103 (422)
..++++|+|++. + .+.-=....+.|++. |.+++....++.+.+-.......||.+|+-+|+.. +... ..+.+
T Consensus 250 ~~~kv~IvY~S~~GnTe~mA~~ia~gl~~~g~gv~v~~~~v~~~~~~~i~~~~~~ad~vilGspT~~---~~~~-p~~~~ 325 (479)
T PRK05452 250 QEDRITIFYDTMSNNTRMMADAIAQGIAEVDPRVAVKIFNVARSDKNEILTNVFRSKGVLVGSSTMN---NVMM-PKIAG 325 (479)
T ss_pred CcCcEEEEEECCccHHHHHHHHHHHHHHhhCCCceEEEEECCCCCHHHHHhHHhhCCEEEEECCccC---Ccch-HHHHH
Confidence 467899999875 2 233333567778876 56666554444433322233356899999998753 2222 24555
Q ss_pred HHHC------CCcEE-EEeCCC----CcHHHHHHHHHcCceecCC
Q 014568 104 FVDS------GHDLI-VAADSN----ASDLIREVATECGVDFDED 137 (422)
Q Consensus 104 Fi~~------GGNlL-i~~~~~----~~~~l~~ll~elGI~~~~~ 137 (422)
|++. .|+.. +.++-+ ..+.+...++++|+.+.++
T Consensus 326 fl~~l~~~~l~gK~~~vFGSygw~g~a~~~~~~~l~~~g~~~~~~ 370 (479)
T PRK05452 326 LLEEITGLRFRNKRASAFGSHGWSGGAVDRLSTRLQDAGFEMSLS 370 (479)
T ss_pred HHHHhhccCcCCCEEEEEECCCcCcHHHHHHHHHHHHCCCEEecc
Confidence 5543 34444 444422 2467888888999999653
No 69
>COG2998 TupB ABC-type tungstate transport system, permease component [Coenzyme metabolism]
Probab=41.22 E-value=66 Score=31.34 Aligned_cols=50 Identities=22% Similarity=0.349 Sum_probs=35.7
Q ss_pred EEecCCcEEEEEeccccccCc--------cCccchHHHHHHHhhcccccCceEEEeee
Q 014568 233 VQARNNARILITGSLSMFSNR--------HEKSGNEQFLTEISKWVFHERGHLKAVNV 282 (422)
Q Consensus 233 lQ~~nnaRvvvvGS~d~fSd~--------~~~~~N~~f~~~l~~W~f~e~gvlr~~~~ 282 (422)
..++-+=-|++-|+.+||.=- ..++-|..=+..++.|+..++|.=-+.++
T Consensus 204 Yr~r~~L~iv~~gd~~L~N~Ysvi~vNP~r~~~vny~~A~kfi~w~~s~~gq~~Ia~f 261 (280)
T COG2998 204 YRNRPTLVIVLEGDPSLFNPYSVIAVNPKRVKGVNYTAATKFIEWLMSEKGQNLIAEF 261 (280)
T ss_pred ecCccceEEEecCCccccCceeEEEEchhcCCCcCchHHHHHHHHHhhHHHHHHHhhc
Confidence 334555667777888887654 24567888889999999999987555444
No 70
>PRK06242 flavodoxin; Provisional
Probab=41.16 E-value=2e+02 Score=24.77 Aligned_cols=58 Identities=16% Similarity=0.192 Sum_probs=35.5
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHH-----CCCcEEEEeCCC-----CcHHHHHHHHHcCceecCC
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVD-----SGHDLIVAADSN-----ASDLIREVATECGVDFDED 137 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~-----~GGNlLi~~~~~-----~~~~l~~ll~elGI~~~~~ 137 (422)
-..||.||+.+|.-. + . -+..+.+|++ +|..+.+.+..+ ....++.++++.|..+...
T Consensus 41 ~~~~d~ii~g~pvy~--~-~-~~~~~~~fl~~~~~~~~k~~~~f~t~g~~~~~~~~~l~~~l~~~g~~~~~~ 108 (150)
T PRK06242 41 LSEYDLIGFGSGIYF--G-K-FHKSLLKLIEKLPPVSGKKAFIFSTSGLPFLKYHKALKKKLKEKGFEIVGE 108 (150)
T ss_pred HhHCCEEEEeCchhc--C-C-cCHHHHHHHHhhhhhcCCeEEEEECCCCCcchHHHHHHHHHHHCCCEEEEE
Confidence 367899999999543 1 2 2234555554 455666554321 1356778888888877653
No 71
>PF00919 UPF0004: Uncharacterized protein family UPF0004; InterPro: IPR013848 The methylthiotransferase (MTTase) or miaB-like family is named after the (dimethylallyl)adenosine tRNA MTTase miaB protein, which catalyses a C-H to C-S bond conversion in the methylthiolation of tRNA. A related bacterial enzyme rimO performs a similar methylthiolation, but on a protein substrate. RimO acts on the ribosomal protein S12 and forms a separate MTTase subfamily. The miaB-subfamily includes mammalian CDK5 regulatory subunit-associated proteins and similar proteins in other eukaryotes. Two other subfamilies, yqeV and CDKAL1, are named after a Bacillus subtilis and a human protein, respectively. While yqeV-like proteins are found in bacteria, CDKAL1 subfamily members occur in eukaryotes and in archaebacteria. The likely MTTases from these 4 subfamilies contain an N-terminal MTTase domain, a central radical generating fold and a C-terminal TRAM domain (see PDOC50926 from PROSITEDOC). The core forms a radical SAM fold (or AdoMet radical), containing a cysteine motif CxxxCxxC that binds a [4Fe-4S] cluster [, , ]. A reducing equivalent from the [4Fe-4S]+ cluster is used to cleave S-adenosylmethionine (SAM) to generate methionine and a 5'-deoxyadenosyl radical. The latter is thought to produce a reactive substrate radical that is amenable to sulphur insertion [, ]. The N-terminal MTTase domain contains 3 cysteines that bind a second [4Fe-4S] cluster, in addition to the radical-generating [4Fe-4S] cluster, which could be involved in the thiolation reaction. The C-terminal TRAM domain is not shared with other radical SAM proteins outside the MTTase family. The TRAM domain can bind to RNA substrate and seems to be important for substrate recognition. The tertiary structure of the central radical SAM fold has six beta/alpha motifs resembling a three-quarter TIM barrel core (see PDOC00155 from PROSITEDOC) []. The N-terminal MTTase domain might form an additional [beta/alpha]2 TIM barrel unit []. ; GO: 0003824 catalytic activity, 0051539 4 iron, 4 sulfur cluster binding, 0009451 RNA modification
Probab=40.77 E-value=62 Score=26.84 Aligned_cols=59 Identities=10% Similarity=0.095 Sum_probs=40.0
Q ss_pred chhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC---CcEEEEe
Q 014568 44 SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG---HDLIVAA 115 (422)
Q Consensus 44 ~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G---GNlLi~~ 115 (422)
+-....+.|+++||+++.. +...|.+||.......-...-..+.|.++.+.+ ..|.+++
T Consensus 15 Dse~i~~~l~~~G~~~~~~-------------~e~AD~iiiNTC~V~~~Ae~k~~~~i~~l~~~~~~~~~ivv~G 76 (98)
T PF00919_consen 15 DSERIASILQAAGYEIVDD-------------PEEADVIIINTCTVRESAEQKSRNRIRKLKKLKKPGAKIVVTG 76 (98)
T ss_pred HHHHHHHHHHhcCCeeecc-------------cccCCEEEEEcCCCCcHHHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 4457889999999998752 244599999999876333333446777777766 4444443
No 72
>PRK06934 flavodoxin; Provisional
Probab=40.62 E-value=1.8e+02 Score=27.92 Aligned_cols=52 Identities=25% Similarity=0.189 Sum_probs=30.9
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHH----CCCcEEEEeC---CCCcHHHHHHHHHcC
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVD----SGHDLIVAAD---SNASDLIREVATECG 131 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~----~GGNlLi~~~---~~~~~~l~~ll~elG 131 (422)
...||.|+|--|-=- +. -+..+..|++ .|.+|..... .+....++.+.+.|+
T Consensus 127 l~~YD~I~IG~PIWw--g~--~P~~V~tFLe~~d~~GK~I~pF~T~ggsg~g~s~~~i~~l~~ 185 (221)
T PRK06934 127 LADYDQIFIGYPIWW--YK--MPMVMYSFFEQHDFSGKTLIPFTTHGGSRFSDSLREIKRLQP 185 (221)
T ss_pred HHhCCEEEEEcchhh--cc--ccHHHHHHHHhcCCCCCEEEEEEecCCCCccchHHHHHHHcC
Confidence 367888888777432 21 4566777776 4666664332 344556666666664
No 73
>PLN02335 anthranilate synthase
Probab=39.76 E-value=72 Score=30.36 Aligned_cols=62 Identities=6% Similarity=0.075 Sum_probs=38.4
Q ss_pred CCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCC
Q 014568 25 ENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (422)
Q Consensus 25 ~~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~ 90 (422)
.+++..+.++++|.. ..-+| .+.+.|+++|.++.....+.. .+.+.....+|.|||.+.+..
T Consensus 13 ~~~~~~~~ilviD~~-dsft~-~i~~~L~~~g~~~~v~~~~~~--~~~~~~~~~~d~iVisgGPg~ 74 (222)
T PLN02335 13 NSSKQNGPIIVIDNY-DSFTY-NLCQYMGELGCHFEVYRNDEL--TVEELKRKNPRGVLISPGPGT 74 (222)
T ss_pred cccCccCcEEEEECC-CCHHH-HHHHHHHHCCCcEEEEECCCC--CHHHHHhcCCCEEEEcCCCCC
Confidence 345556666666864 12222 477888999999998755432 232222346789888877654
No 74
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=39.68 E-value=1e+02 Score=28.30 Aligned_cols=93 Identities=11% Similarity=0.051 Sum_probs=52.8
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL 112 (422)
+.++|+. +.-+| .+.+.|+++|.++.....++. .+.+.....+|.|||.+.+...- .......+.+.++.+--+|
T Consensus 2 il~idn~-Dsft~-nl~~~l~~~g~~v~v~~~~~~--~~~~~~~~~~d~iils~GPg~p~-~~~~~~~~~~~~~~~~PiL 76 (187)
T PRK08007 2 ILLIDNY-DSFTW-NLYQYFCELGADVLVKRNDAL--TLADIDALKPQKIVISPGPCTPD-EAGISLDVIRHYAGRLPIL 76 (187)
T ss_pred EEEEECC-CccHH-HHHHHHHHCCCcEEEEeCCCC--CHHHHHhcCCCEEEEcCCCCChH-HCCccHHHHHHhcCCCCEE
Confidence 4566765 23333 478889999999988655432 23222234679988887765421 1112234444455444444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 014568 113 -VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 113 -i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
|- =+...++..+|=.+..
T Consensus 77 GIC------lG~Q~la~a~Gg~v~~ 95 (187)
T PRK08007 77 GVC------LGHQAMAQAFGGKVVR 95 (187)
T ss_pred EEC------HHHHHHHHHcCCEEEe
Confidence 22 3566777788866654
No 75
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=39.10 E-value=4.4e+02 Score=29.02 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=39.6
Q ss_pred CCCCCCccHHHHHHHHHCCCcEEEEeCCCCcH-HHHHHHHHcCceecCCCCeEEEeccCcc
Q 014568 90 ERFGGSIDVASIVDFVDSGHDLIVAADSNASD-LIREVATECGVDFDEDPAAMVIDHINYA 149 (422)
Q Consensus 90 ~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~-~l~~ll~elGI~~~~~~~~~VvD~f~~~ 149 (422)
+.. .++...+.+..++|.+++|+.|.+.+. ..-..++++||++ +|.||....
T Consensus 111 eGY--Gl~~~~i~~~~~~~~~LiItvD~Gi~~~e~i~~a~~~gidv------IVtDHH~~~ 163 (575)
T PRK11070 111 DGY--GLSPEVVDQAHARGAQLIVTVDNGISSHAGVAHAHALGIPV------LVTDHHLPG 163 (575)
T ss_pred CCC--CCCHHHHHHHHhcCCCEEEEEcCCcCCHHHHHHHHHCCCCE------EEECCCCCC
Confidence 545 478899999999999999999987752 3336789998854 688887544
No 76
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=38.86 E-value=1.9e+02 Score=29.83 Aligned_cols=108 Identities=10% Similarity=0.164 Sum_probs=62.5
Q ss_pred CCCeEEEEEcCcc--cccchhHHHHHHH--hCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCc-cHHHHH
Q 014568 28 TDRRVLVLVDDFA--IKSSHSLYFGSLT--SRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSI-DVASIV 102 (422)
Q Consensus 28 ~~~r~LVlld~~~--~~~~~S~f~~~L~--~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~-e~~~L~ 102 (422)
..++++|+|.+.. ++.-=....+.|+ +.|.+++.....+.+.+-.......||.||+-+|+-. . +.. +...+.
T Consensus 246 ~~~kv~IvY~S~~GnTe~mA~~ia~g~~~~~~g~~v~~~~~~~~~~~~i~~~~~~~d~ii~GspT~~-~-~~~~~~~~~l 323 (394)
T PRK11921 246 QENQVTILYDTMWNSTRRMAEAIAEGIKKANKDVTVKLYNSAKSDKNDIITEVFKSKAILVGSSTIN-R-GILSSTAAIL 323 (394)
T ss_pred CcCcEEEEEECCchHHHHHHHHHHHHHhhcCCCCeEEEEECCCCCHHHHHHHHHhCCEEEEECCCcC-c-cccHHHHHHH
Confidence 4688999998752 2333334567777 6788888665554432222222346899999999743 1 111 233333
Q ss_pred HHHHC---CCcEE-EEeCCC----CcHHHHHHHHHcCceecCC
Q 014568 103 DFVDS---GHDLI-VAADSN----ASDLIREVATECGVDFDED 137 (422)
Q Consensus 103 ~Fi~~---GGNlL-i~~~~~----~~~~l~~ll~elGI~~~~~ 137 (422)
+.+.. .|+.. +.++-+ ..+.+...++++|+.+-.+
T Consensus 324 ~~l~~~~~~~K~~a~FGsygw~g~a~~~~~~~l~~~g~~~v~~ 366 (394)
T PRK11921 324 EEIKGLGFKNKKAAAFGSYGWSGESVKIITERLKKAGFEIVND 366 (394)
T ss_pred HHhhccCcCCCEEEEEecCCCccHHHHHHHHHHHHCCCEEccC
Confidence 33321 24444 444422 2466778888999998765
No 77
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=38.84 E-value=1.2e+02 Score=27.84 Aligned_cols=93 Identities=11% Similarity=0.065 Sum_probs=52.4
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL 112 (422)
++++|+. +.-+| .+.+.|+++|++++...++..+ +.......+|.+|+.+.....- .+.....+.+.++.+--+|
T Consensus 2 il~id~~-dsft~-~~~~~l~~~g~~~~~~~~~~~~--~~~~~~~~~~~iilsgGp~~~~-~~~~~~~~i~~~~~~~PiL 76 (193)
T PRK08857 2 LLMIDNY-DSFTY-NLYQYFCELGAQVKVVRNDEID--IDGIEALNPTHLVISPGPCTPN-EAGISLQAIEHFAGKLPIL 76 (193)
T ss_pred EEEEECC-CCcHH-HHHHHHHHCCCcEEEEECCCCC--HHHHhhCCCCEEEEeCCCCChH-HCcchHHHHHHhcCCCCEE
Confidence 4566765 22222 4788889999999987655332 2222234578888877654311 1112344555565554455
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 014568 113 -VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 113 -i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
|- -+.+.++..+|=.+.+
T Consensus 77 GIC------lG~Qlia~a~Gg~v~~ 95 (193)
T PRK08857 77 GVC------LGHQAIAQVFGGQVVR 95 (193)
T ss_pred EEc------HHHHHHHHHhCCEEEe
Confidence 32 2456677777755544
No 78
>PHA02909 hypothetical protein; Provisional
Probab=38.58 E-value=9.6 Score=28.66 Aligned_cols=23 Identities=35% Similarity=0.774 Sum_probs=17.5
Q ss_pred cchhh-HHHHHHHHHhhheeeeec
Q 014568 398 YPYYG-SAFSMMAGFFIFTIVHLY 420 (422)
Q Consensus 398 ~pyy~-s~~~~~~~~~~F~~~~l~ 420 (422)
-+||+ ..|..|++|++|+++||.
T Consensus 24 kvyytentfcimvsfilfviifls 47 (72)
T PHA02909 24 KVYYTENTFCIMVSFILFVIIFLS 47 (72)
T ss_pred EEEEeccchhHHHHHHHHHHHHHH
Confidence 34554 468889999999998873
No 79
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=38.52 E-value=57 Score=30.28 Aligned_cols=76 Identities=14% Similarity=0.073 Sum_probs=43.7
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCC----CCCccHHHHHHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF----GGSIDVASIVDFVD 106 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~----~~~~e~~~L~~Fi~ 106 (422)
|+.|+.=.+...+.-..+.+.|+.+|++++....++. ...+.||.|||-....... ...--.+.|+++++
T Consensus 2 ~i~vl~~~~~~~e~~~~~~~~l~~~g~~~~~~~~~~~------~~l~~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~ 75 (200)
T PRK13527 2 KIGVLALQGDVEEHIDALKRALDELGIDGEVVEVRRP------GDLPDCDALIIPGGESTTIGRLMKREGILDEIKEKIE 75 (200)
T ss_pred EEEEEEECCccHHHHHHHHHHHHhcCCCeEEEEeCCh------HHhccCCEEEECCCcHHHHHHHHhhccHHHHHHHHHH
Confidence 3444443333334444677788999998887655432 1124689988866533211 00012577888888
Q ss_pred CCCcEE
Q 014568 107 SGHDLI 112 (422)
Q Consensus 107 ~GGNlL 112 (422)
+|.-+|
T Consensus 76 ~~~pil 81 (200)
T PRK13527 76 EGLPIL 81 (200)
T ss_pred CCCeEE
Confidence 877555
No 80
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=38.13 E-value=87 Score=28.96 Aligned_cols=61 Identities=10% Similarity=0.003 Sum_probs=40.8
Q ss_pred ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC-------ccHHHHHHHHHCCCcEE
Q 014568 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS-------IDVASIVDFVDSGHDLI 112 (422)
Q Consensus 42 ~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~-------~e~~~L~~Fi~~GGNlL 112 (422)
...+..|...++.+|.++.+..+.+. ...+|.|||-... ..... -..+.|.+++++|+-+|
T Consensus 9 ~gN~~~l~~~~~~~G~~~~~~~~~~~--------~~~~d~lilpGg~--~~~~~~~~~~~~~~~~~i~~~~~~g~pvl 76 (194)
T cd01750 9 ISNFTDLDPLAREPGVDVRYVEVPEG--------LGDADLIILPGSK--DTIQDLAWLRKRGLAEAIKNYARAGGPVL 76 (194)
T ss_pred ccCHHHHHHHHhcCCceEEEEeCCCC--------CCCCCEEEECCCc--chHHHHHHHHHcCHHHHHHHHHHCCCcEE
Confidence 45677899999999999998654432 4567876663332 12111 13467899998888776
No 81
>TIGR03567 FMN_reduc_SsuE FMN reductase, SsuE family. Members of this protein family use NAD(P)H to reduce FMN and regenerate FMNH2. Members include the homodimeric, NAD(P)H-dependent enzyme SsuE from Escherichia coli, which serves as a partner to an FMNH2-dependent alkanesulfonate monooxygenase. It is induced by sulfate starvation. The NADH-dependent enzyme MsuE from Pseudomonas aeruginosa is outside the scope of this model (see model TIGR03566).
Probab=37.55 E-value=3e+02 Score=24.63 Aligned_cols=90 Identities=13% Similarity=0.093 Sum_probs=48.7
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcc-ccc------------cCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC---CCc
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIG-LQR------------YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS---GHD 110 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~-L~~------------~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~---GGN 110 (422)
.+.+.|++.|.+++.....+-.+. +.. .....+|.+||..|--- .+-+-..+.+.|++.. .|.
T Consensus 21 ~~~~~l~~~~~~~~~idl~~l~~~~~~~~~~~~~~~~~l~~~i~~AD~iI~~sP~Y~-~sip~~LK~~iD~~~~~~l~~K 99 (171)
T TIGR03567 21 HVREALQEQGVEVDHLSVRDLPAEDLLFARFDSPAIKAATAQVAQADGVVVATPVYK-ASYSGVLKALLDLLPQRALRGK 99 (171)
T ss_pred HHHHHHHHCCCeEEEEEecCCChHHhhhcCCCCHHHHHHHHHHHHCCEEEEECCccc-CCCCHHHHHHHHhCChhhhCCC
Confidence 366677778888876644332211 111 11136799999999654 2212233445544432 133
Q ss_pred -EEEEeCCCC-c------HHHHHHHHHcCceecCC
Q 014568 111 -LIVAADSNA-S------DLIREVATECGVDFDED 137 (422)
Q Consensus 111 -lLi~~~~~~-~------~~l~~ll~elGI~~~~~ 137 (422)
+.+.+..+. . ..+|.++..+|+...+.
T Consensus 100 ~v~~~~~gg~~~~~~~~~~~l~~~l~~l~~~~~~~ 134 (171)
T TIGR03567 100 VVLPIATGGSIAHLLAIDYALKPVLSALGARHILP 134 (171)
T ss_pred EEEEEEcCCchhHHHHHHHHHHHHHHHcCCccccc
Confidence 333322222 1 36899999999965554
No 82
>TIGR01465 cobM_cbiF precorrin-4 C11-methyltransferase. This model represents precorrin-4 C11-methyltransferase, one of two methyltransferases commonly referred to as precorrin-3 methylase (the other is precorrin-3B C17-methyltransferase, EC 2.1.1.131). This enzyme participates in the pathway toward the biosynthesis of cobalamin and related products.
Probab=37.28 E-value=1.5e+02 Score=27.72 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=56.7
Q ss_pred CCeEEEEEcC-cccccchhHHHHHHHhCCceEEEeeCCCCCcc--ccccCcccc-----CEEEEeCCCCCCCCCCccHHH
Q 014568 29 DRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY-----DALVLFCPSVERFGGSIDVAS 100 (422)
Q Consensus 29 ~~r~LVlld~-~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~--L~~~g~~~y-----d~LVI~~p~~~~~~~~~e~~~ 100 (422)
|+++.+|.-+ +..-..++...+.++++|.+++.. |.=++++ ...-|.+.+ +.+++........ ....+.
T Consensus 71 g~~V~~L~~GDP~~~~~~~~l~~~~~~~g~~vevi-PGiSS~~aa~a~~g~~l~~~~~~~~~~~~~~~g~~~--~~~~~~ 147 (229)
T TIGR01465 71 GKLVVRLHTGDPSIYGAIAEQMQLLEALGIPYEVV-PGVSSFFAAAAALGAELTVPEVSQTVILTRAEGRTP--MPEGEK 147 (229)
T ss_pred CCeEEEEeCcCccccccHHHHHHHHHHCCCCEEEE-CChhHHHHHHHHcCCCccccCCccEEEEEeccCCCC--CCChHH
Confidence 5555555532 222344455567788889988875 3322222 234444432 3444433222211 113456
Q ss_pred HHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 014568 101 IVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 101 L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~ 133 (422)
|.+.++.++.+.++.++.....+...+.+.|+.
T Consensus 148 l~~~~~~~~~~vi~~~~~~~~~i~~~L~~~g~~ 180 (229)
T TIGR01465 148 LADLAKHGATMAIFLSAHILDKVVKELIEGGYS 180 (229)
T ss_pred HHHHhcCCCeEEEECcHHHHHHHHHHHHHcCcC
Confidence 888887777877777665566777777787874
No 83
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=36.98 E-value=79 Score=32.75 Aligned_cols=156 Identities=17% Similarity=0.138 Sum_probs=73.0
Q ss_pred eEEEEEcCcccccchhHHHHHHHh---CCceEEEeeCCCCCccccccC-ccccCEEEEeCCCC-----CCCCCCccHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTS---RGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSV-----ERFGGSIDVASI 101 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~---rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~-----~~~~~~~e~~~L 101 (422)
++||.-+.-.....-..-...|+. -.|.|.+...+ .|.+.. ...++.||+ |.-. +.+++ .-.+.|
T Consensus 2 nVlVY~G~G~~~~sv~~~~~~Lr~~l~p~y~V~~v~~~----~l~~~pw~~~~~LlV~-PGG~d~~y~~~l~~-~g~~~I 75 (367)
T PF09825_consen 2 NVLVYNGPGTSPESVRHTLESLRRLLSPHYAVIPVTAD----ELLNEPWQSKCALLVM-PGGADLPYCRSLNG-EGNRRI 75 (367)
T ss_pred eEEEEecCCCCHHHHHHHHHHHHHhcCCCeEEEEeCHH----HhhcCccccCCcEEEE-CCCcchHHHHhhCh-HHHHHH
Confidence 455544443333333344444442 35888876322 222222 345675554 4422 22322 135799
Q ss_pred HHHHHCCCcEE-EEeCC----CC-----cH-HHH-HHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccc
Q 014568 102 VDFVDSGHDLI-VAADS----NA-----SD-LIR-EVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKAD 169 (422)
Q Consensus 102 ~~Fi~~GGNlL-i~~~~----~~-----~~-~l~-~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv~~~~i~~~ 169 (422)
++||++||+-| +-++. .. .. .+. .=-+|+++.+---+|. +...|.|... .+.. .+-.. . ..+
T Consensus 76 r~fV~~GG~YlGiCAGaY~as~~~ef~~g~p~lev~g~ReL~ffpG~~rG~-~~~gf~Y~se--~Gar-a~~l~-~-~~~ 149 (367)
T PF09825_consen 76 RQFVENGGGYLGICAGAYYASSRCEFEVGNPKLEVVGPRELAFFPGIARGP-AFPGFQYNSE--SGAR-AVKLK-V-NDS 149 (367)
T ss_pred HHHHHcCCcEEEECcchhhhcceeEeccCCcceEeecCcccccccCCccCc-cccCCccCCC--CCeE-eEEEE-e-cCC
Confidence 99999999988 55442 10 11 111 1234566665444454 4566777632 1111 11111 1 111
Q ss_pred eeccCCcccCceeeeceeEEeecCCc-eeEeee
Q 014568 170 VILGSKKIEAPVLFQGIGHSLNPANS-LVLKVL 201 (422)
Q Consensus 170 ~i~~~~~~~~~vl~~g~g~~l~~~n~-~~~pIL 201 (422)
. .......++|+|.+..++.++. .-.-||
T Consensus 150 ~---~~~~~~~~yynGG~~Fv~~~~~~~~v~vL 179 (367)
T PF09825_consen 150 Q---AVPSEFSSYYNGGGVFVDADKYDKNVEVL 179 (367)
T ss_pred C---CCCceeEEEECCceEEeCccccCCCeEEE
Confidence 0 0011123578888888875443 344455
No 84
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=36.87 E-value=82 Score=26.32 Aligned_cols=83 Identities=16% Similarity=0.107 Sum_probs=46.7
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcccc-ccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC--cEE-EEeCCCCcHH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLI-VAADSNASDL 122 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG--NlL-i~~~~~~~~~ 122 (422)
-+...|+..||++.+..++-+.-.+. .-.+...|.+.|.......+ ...+.+.+-+.+-+ ++. ++++.....
T Consensus 18 ~~~~~l~~~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~~~~~---~~~~~~i~~l~~~~~~~~~i~vGG~~~~~- 93 (119)
T cd02067 18 IVARALRDAGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSGLLTTHM---TLMKEVIEELKEAGLDDIPVLVGGAIVTR- 93 (119)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccH---HHHHHHHHHHHHcCCCCCeEEEECCCCCh-
Confidence 36678899999998765443321232 23346678777755534433 24455555554433 554 444443332
Q ss_pred HHHHHHHcCce
Q 014568 123 IREVATECGVD 133 (422)
Q Consensus 123 l~~ll~elGI~ 133 (422)
--..+++.|++
T Consensus 94 ~~~~~~~~G~D 104 (119)
T cd02067 94 DFKFLKEIGVD 104 (119)
T ss_pred hHHHHHHcCCe
Confidence 22578898875
No 85
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=36.13 E-value=79 Score=32.25 Aligned_cols=54 Identities=11% Similarity=0.315 Sum_probs=39.2
Q ss_pred cccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCC-cHHHHHHHHHcC
Q 014568 77 YLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNA-SDLIREVATECG 131 (422)
Q Consensus 77 ~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~-~~~l~~ll~elG 131 (422)
..+|.+|+.-||.+... ..=...+..-+..||.|+++++... -+++..+++.++
T Consensus 75 ~~~d~~~~~~pk~k~~~-~~~l~~~~~~l~~g~~i~~~G~~~~g~~s~~k~~~~~~ 129 (342)
T PRK09489 75 ADCDTLIYYWPKNKQEA-QFQLMNLLSLLPVGTDIFVVGENRSGVRSAEKMLADYA 129 (342)
T ss_pred CCCCEEEEECCCCHHHH-HHHHHHHHHhCCCCCEEEEEEeccccHHHHHHHHHHhc
Confidence 46899999999988442 2233556666778999998887654 356777777775
No 86
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=35.02 E-value=2.2e+02 Score=25.72 Aligned_cols=77 Identities=17% Similarity=0.166 Sum_probs=41.3
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCC---ceEEEeeCCCCCccccccCccccCEEEEeCCCCCC-CCCC----ccHHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRG---FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGS----IDVASIV 102 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG---~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~-~~~~----~e~~~L~ 102 (422)
|++||.-+.... .+.+.+.|++.| ++++...+.+... ......||.+||-...... .... ...+.|.
T Consensus 1 ~i~il~~~~~~~--~~~~~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~ 75 (188)
T cd01741 1 RILILQHDTPEG--PGLFEDLLREAGAETIEIDVVDVYAGEL---LPDLDDYDGLVILGGPMSVDEDDYPWLKKLKELIR 75 (188)
T ss_pred CEEEEECCCCCC--cchHHHHHHhcCCCCceEEEEecCCCCC---CCCcccCCEEEECCCCccCCccCChHHHHHHHHHH
Confidence 455554332221 456666777777 7888765555432 2233678999997765432 2111 1223445
Q ss_pred HHHHCCCcEE
Q 014568 103 DFVDSGHDLI 112 (422)
Q Consensus 103 ~Fi~~GGNlL 112 (422)
..+++|.-+|
T Consensus 76 ~~~~~~~pil 85 (188)
T cd01741 76 QALAAGKPVL 85 (188)
T ss_pred HHHHCCCCEE
Confidence 5566665444
No 87
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=34.37 E-value=85 Score=28.81 Aligned_cols=51 Identities=6% Similarity=0.122 Sum_probs=33.0
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV 89 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~ 89 (422)
+.++|+. +..+|. +.+.|+.+|.++....+++.+. .....||.|||.+...
T Consensus 4 iliid~~-dsf~~~-i~~~l~~~g~~~~v~~~~~~~~----~~l~~~d~iIi~gGp~ 54 (190)
T PRK06895 4 LLIINNH-DSFTFN-LVDLIRKLGVPMQVVNVEDLDL----DEVENFSHILISPGPD 54 (190)
T ss_pred EEEEeCC-CchHHH-HHHHHHHcCCcEEEEECCccCh----hHhccCCEEEECCCCC
Confidence 3445554 455665 8999999999999875544221 1124589999886543
No 88
>PRK03094 hypothetical protein; Provisional
Probab=34.18 E-value=64 Score=26.11 Aligned_cols=40 Identities=13% Similarity=0.077 Sum_probs=29.5
Q ss_pred ccchhHHHHHHHhCCceEEEeeCCCCCccccc-cCccccCEEEEeCCCCC
Q 014568 42 KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQR-YGQYLYDALVLFCPSVE 90 (422)
Q Consensus 42 ~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~-~g~~~yd~LVI~~p~~~ 90 (422)
.+..|...+.|+++||+|... .. .+.+.+|++|+-.-...
T Consensus 7 E~~Ls~i~~~L~~~GYeVv~l---------~~~~~~~~~Da~VitG~d~n 47 (80)
T PRK03094 7 EQSLTDVQQALKQKGYEVVQL---------RSEQDAQGCDCCVVTGQDSN 47 (80)
T ss_pred ecCcHHHHHHHHHCCCEEEec---------CcccccCCcCEEEEeCCCcc
Confidence 456778899999999999753 22 22467899999776655
No 89
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=34.04 E-value=74 Score=25.37 Aligned_cols=45 Identities=18% Similarity=0.348 Sum_probs=24.4
Q ss_pred eeecccCCeEEEEEEeCceEeeccccCCCceEEEEEecCCce-eeeEEEE
Q 014568 316 WEPYVSDDVQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVY-GVFQFKV 364 (422)
Q Consensus 316 w~P~~~~d~QlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~h-Gvf~f~v 364 (422)
|-| .|+.|.|-... +.-....|+..++|.++++. |+-. |-|+|++
T Consensus 13 wAP-~A~~V~L~~~~-~~~~~~~m~~~~~G~W~~~v--~~l~~g~Y~Y~~ 58 (85)
T cd02858 13 FAP-KANEVQVRGSW-GGAGSHPMTKDEAGVWSVTT--GPLAPGIYTYSF 58 (85)
T ss_pred ECC-CCCEEEEEeec-CCCccEeCeECCCeEEEEEE--CCCCCcEEEEEE
Confidence 555 24555554332 12234557667789999877 4433 4344443
No 90
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=33.56 E-value=1.2e+02 Score=28.13 Aligned_cols=97 Identities=14% Similarity=0.192 Sum_probs=59.8
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCce-EEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQ-LEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~-v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG 109 (422)
..++-+|.....-. .-.+.+++.|.+ +++...+-.++. . ...||.++...- ..+ ..-.+.+.+.+..||
T Consensus 70 ~~V~giD~s~~~l~--~A~~~~~~~~l~~i~~~~~d~~~~~--~--~~~fDlV~~~~~--~~~--~~~l~~~~~~LkpGG 139 (187)
T PRK00107 70 LKVTLVDSLGKKIA--FLREVAAELGLKNVTVVHGRAEEFG--Q--EEKFDVVTSRAV--ASL--SDLVELCLPLLKPGG 139 (187)
T ss_pred CeEEEEeCcHHHHH--HHHHHHHHcCCCCEEEEeccHhhCC--C--CCCccEEEEccc--cCH--HHHHHHHHHhcCCCe
Confidence 34666665433221 223344445542 555433222221 1 457898887431 112 224477888999999
Q ss_pred cEEEEeCCCCcHHHHHHHHHcCceecCC
Q 014568 110 DLIVAADSNASDLIREVATECGVDFDED 137 (422)
Q Consensus 110 NlLi~~~~~~~~~l~~ll~elGI~~~~~ 137 (422)
.+++...+.....+..+++++|..+..-
T Consensus 140 ~lv~~~~~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 140 RFLALKGRDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred EEEEEeCCChHHHHHHHHHhcCceEeee
Confidence 9998877777888999999999998874
No 91
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=33.29 E-value=51 Score=30.85 Aligned_cols=65 Identities=18% Similarity=0.353 Sum_probs=35.2
Q ss_pred ceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc----eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 295 IYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP----YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 295 ~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldP----y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
.=.++|.|..+.+|- .+|. |-|--++.--+| ..|..|.+.++-.|.+.|+ |++=|.|.|.|.=.+
T Consensus 22 KrvvGe~v~V~Adif--~DGH------D~l~A~l~~r~~~~~~w~~vpM~~~gnDrW~a~f~-~~~~G~~~f~VeAW~ 90 (187)
T PF11896_consen 22 KRVVGEPVPVSADIF--RDGH------DALAAELLWRHPGEREWQEVPMTPLGNDRWEASFT-PDRPGRYEFRVEAWV 90 (187)
T ss_dssp EEETT-EEEEEEEE----SSS------S-EEEEEEEE-TTS-B----B-EESTS-EEEEEEE---SSEEEEEEEEEEE
T ss_pred eeecCCeEEEEEEEE--ecCC------CcEEEEEEEECCCCCcceeeccccCCCCEEEEEEE-CCCceeEEEEEEEEe
Confidence 345677777777774 3331 112222222222 3578888888999999999 889999999997554
No 92
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=33.24 E-value=88 Score=27.38 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=49.5
Q ss_pred HHHHHHhCCceEEEeeCCCCCcc-ccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-CC-cEEEEeCCCCcHHHH
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-GH-DLIVAADSNASDLIR 124 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~-L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-GG-NlLi~~~~~~~~~l~ 124 (422)
....|+..||+|.....+.+.-. ....-+...|.++|-+-..... ...+.+.+-+++ |- ++.++.+...++.-.
T Consensus 22 v~~~l~~~GfeVi~lg~~~s~e~~v~aa~e~~adii~iSsl~~~~~---~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~ 98 (132)
T TIGR00640 22 IATAYADLGFDVDVGPLFQTPEEIARQAVEADVHVVGVSSLAGGHL---TLVPALRKELDKLGRPDILVVVGGVIPPQDF 98 (132)
T ss_pred HHHHHHhCCcEEEECCCCCCHHHHHHHHHHcCCCEEEEcCchhhhH---HHHHHHHHHHHhcCCCCCEEEEeCCCChHhH
Confidence 45568889999988654433211 1233346778888855544433 245667776766 43 566555544444445
Q ss_pred HHHHHcCce
Q 014568 125 EVATECGVD 133 (422)
Q Consensus 125 ~ll~elGI~ 133 (422)
.-+.++||.
T Consensus 99 ~~l~~~Gvd 107 (132)
T TIGR00640 99 DELKEMGVA 107 (132)
T ss_pred HHHHHCCCC
Confidence 668899984
No 93
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=32.79 E-value=1.3e+02 Score=24.77 Aligned_cols=85 Identities=15% Similarity=0.155 Sum_probs=50.9
Q ss_pred hHHHHHHHhCCceEEEeeCCCCCccccc-cCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC-c-EEEEeCCCCcHH
Q 014568 46 SLYFGSLTSRGFQLEFKLADDPNIGLQR-YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH-D-LIVAADSNASDL 122 (422)
Q Consensus 46 S~f~~~L~~rG~~v~~~~~~d~~l~L~~-~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG-N-lLi~~~~~~~~~ 122 (422)
......|+++||++.+...+-..-.+.+ -.+..+|.+.+-.+....+ .....+.+.+++.+ + .++++++..+..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~---~~~~~l~~~~k~~~p~~~iv~GG~~~t~~ 94 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNL---PEAKRLARAIKERNPNIPIVVGGPHATAD 94 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHH---HHHHHHHHHHHTTCTTSEEEEEESSSGHH
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcH---HHHHHHHHHHHhcCCCCEEEEECCchhcC
Confidence 3578889999999998744432212222 1124678877755443323 25577777787753 3 556677766555
Q ss_pred HHHHHHH-cCce
Q 014568 123 IREVATE-CGVD 133 (422)
Q Consensus 123 l~~ll~e-lGI~ 133 (422)
-+.++++ -|++
T Consensus 95 ~~~~l~~~~~~D 106 (121)
T PF02310_consen 95 PEEILREYPGID 106 (121)
T ss_dssp HHHHHHHHHTSE
T ss_pred hHHHhccCcCcc
Confidence 5566766 4543
No 94
>cd06167 LabA_like LabA_like proteins. A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.
Probab=32.64 E-value=1.5e+02 Score=25.53 Aligned_cols=79 Identities=20% Similarity=0.248 Sum_probs=48.5
Q ss_pred cchhHHHHHHHhCCceEEEeeC-------CCCCcccc----cc-CccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCc
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLA-------DDPNIGLQ----RY-GQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHD 110 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~-------~d~~l~L~----~~-g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGN 110 (422)
+....|.+.|++.|+++..... +..+..|. +. -...+|.+||++.-.+ |.+ -.+.|++ .|-+
T Consensus 52 ~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~D-f~~--~i~~lr~---~G~~ 125 (149)
T cd06167 52 ERQRGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSD-FVP--LVERLRE---LGKR 125 (149)
T ss_pred hhHHHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCcc-HHH--HHHHHHH---cCCE
Confidence 4567899999999999976532 11222221 11 1136799999888777 633 3455554 4778
Q ss_pred EEEEeCC-CCcHHHHHHH
Q 014568 111 LIVAADS-NASDLIREVA 127 (422)
Q Consensus 111 lLi~~~~-~~~~~l~~ll 127 (422)
+.+++.+ ..+..++..+
T Consensus 126 V~v~~~~~~~s~~L~~~~ 143 (149)
T cd06167 126 VIVVGFEAKTSRELRKAA 143 (149)
T ss_pred EEEEccCccChHHHHHhC
Confidence 8877766 4455555433
No 95
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=32.48 E-value=2.7e+02 Score=27.05 Aligned_cols=89 Identities=9% Similarity=0.057 Sum_probs=52.9
Q ss_pred hHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCC-------C
Q 014568 46 SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADS-------N 118 (422)
Q Consensus 46 S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~-------~ 118 (422)
-.+.+.|+++||++.....++..+.... ...+|.+++...... +.+ ..+..+++.=| +-+.+.+ .
T Consensus 26 ~~i~~al~~~g~~v~~i~~~~~~~~~~~--~~~~D~v~~~~~g~~--~~~---~~~~~~le~~g-i~~~g~~~~~~~~~~ 97 (304)
T PRK01372 26 AAVLAALREAGYDAHPIDPGEDIAAQLK--ELGFDRVFNALHGRG--GED---GTIQGLLELLG-IPYTGSGVLASALAM 97 (304)
T ss_pred HHHHHHHHHCCCEEEEEecCcchHHHhc--cCCCCEEEEecCCCC--CCc---cHHHHHHHHcC-CCccCCCHHHHHHHh
Confidence 4799999999999998766655443332 235787777643221 112 23444555444 3333222 1
Q ss_pred CcHHHHHHHHHcCceecCCCCeEEEec
Q 014568 119 ASDLIREVATECGVDFDEDPAAMVIDH 145 (422)
Q Consensus 119 ~~~~l~~ll~elGI~~~~~~~~~VvD~ 145 (422)
.-...+.+++++||...+. .+++.
T Consensus 98 dK~~~k~~l~~~gIp~p~~---~~~~~ 121 (304)
T PRK01372 98 DKLRTKLVWQAAGLPTPPW---IVLTR 121 (304)
T ss_pred CHHHHHHHHHHCCCCCCCE---EEEeC
Confidence 1246778999999998884 45544
No 96
>PHA03392 egt ecdysteroid UDP-glucosyltransferase; Provisional
Probab=32.46 E-value=46 Score=35.79 Aligned_cols=38 Identities=18% Similarity=0.371 Sum_probs=26.5
Q ss_pred CCCeEEEEEc--CcccccchhHHHHHHHhCCceEEEeeCC
Q 014568 28 TDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLAD 65 (422)
Q Consensus 28 ~~~r~LVlld--~~~~~~~~S~f~~~L~~rG~~v~~~~~~ 65 (422)
.+.|+|++.- +.+---....+.+.|.+|||+|+...+.
T Consensus 19 ~~~kIl~~~P~~~~SH~~~~~~l~~~La~rGH~VTvi~p~ 58 (507)
T PHA03392 19 RAARILAVFPTPAYSHHSVFKVYVEALAERGHNVTVIKPT 58 (507)
T ss_pred CcccEEEEcCCCCCcHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4567887743 2222345567889999999999988664
No 97
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=32.29 E-value=3.3e+02 Score=28.46 Aligned_cols=105 Identities=18% Similarity=0.163 Sum_probs=73.4
Q ss_pred eEEEEEcCc--ccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC-CCCCCCccHHHHHHHHHC
Q 014568 31 RVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~--~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~L~~Fi~~ 107 (422)
+++++++.. +...-=....+.|.+.|-++......+.+.+-......+++.+||-+|+. ... .-.++.++-++..
T Consensus 248 ~V~l~Y~smyg~T~~ma~aiaegl~~~gv~v~~~~~~~~~~~eI~~~i~~a~~~vvGsPT~~~~~--~p~i~~~l~~v~~ 325 (388)
T COG0426 248 KVDLIYDSMYGNTEKMAQAIAEGLMKEGVDVEVINLEDADPSEIVEEILDAKGLVVGSPTINGGA--HPPIQTALGYVLA 325 (388)
T ss_pred eEEEEEecccCCHHHHHHHHHHHhhhcCCceEEEEcccCCHHHHHHHHhhcceEEEecCcccCCC--CchHHHHHHHHHh
Confidence 789999864 22333345888999999999986555554554555668899999999974 222 2367788777764
Q ss_pred C----CcEEEEeC----CCCcHHHHHHHHHcCceecCC
Q 014568 108 G----HDLIVAAD----SNASDLIREVATECGVDFDED 137 (422)
Q Consensus 108 G----GNlLi~~~----~~~~~~l~~ll~elGI~~~~~ 137 (422)
= .-+.+.++ ....+.++.+++++|.++...
T Consensus 326 ~~~~~k~~~vfgS~GW~g~av~~i~~~l~~~g~~~~~~ 363 (388)
T COG0426 326 LAPKNKLAGVFGSYGWSGEAVDLIEEKLKDLGFEFGFD 363 (388)
T ss_pred ccCcCceEEEEeccCCCCcchHHHHHHHHhcCcEEecc
Confidence 2 22444443 234578999999999999987
No 98
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=32.28 E-value=1.1e+02 Score=34.36 Aligned_cols=88 Identities=18% Similarity=0.218 Sum_probs=57.6
Q ss_pred hhHHHHHHHhCCceEEEeeCCCCCccccccCccc-cCEEEEeCCCCCCCCCC------ccHHHHHHHHHCCCcEEEEeCC
Q 014568 45 HSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYL-YDALVLFCPSVERFGGS------IDVASIVDFVDSGHDLIVAADS 117 (422)
Q Consensus 45 ~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~-yd~LVI~~p~~~~~~~~------~e~~~L~~Fi~~GGNlLi~~~~ 117 (422)
|.-.+++|...-++|+|.+=+| +.+.|.+. .|.||=.......++|. ...++|.+|+.+||.++=..+|
T Consensus 470 y~GvlE~LSG~p~dV~FisFdD----i~~~gi~~didViIN~G~a~ta~SGG~~W~d~~~~~aLr~fV~~GGglIGVgDp 545 (719)
T TIGR02336 470 YYGILECLSGMPVEVEFISFDD----ILEHGIDSDIDVIINGGDADTAWSGGDVWTNPKLVETVRAWVRGGGGFVGVGEP 545 (719)
T ss_pred HHHHHHHhcCCCeeEEEecHHH----HhhcCCCcCCcEEEecCcccccccCccccCCHHHHHHHHHHHHcCCeEEEEECC
Confidence 3347788888999999973332 33446644 46655555544446542 2348999999999999944555
Q ss_pred CC----cHHHHHHHHHcCceecCC
Q 014568 118 NA----SDLIREVATECGVDFDED 137 (422)
Q Consensus 118 ~~----~~~l~~ll~elGI~~~~~ 137 (422)
.. ...- .|+.-|||+.+..
T Consensus 546 sa~v~~G~~P-qLadvLGV~~E~f 568 (719)
T TIGR02336 546 SAAPQNGRFF-QLADVIGVDKERY 568 (719)
T ss_pred ccCCcCCCCc-chhhhcceeeeee
Confidence 32 1122 6788889999886
No 99
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=31.15 E-value=1.4e+02 Score=31.23 Aligned_cols=89 Identities=18% Similarity=0.161 Sum_probs=60.9
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCc-cccCEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQ-YLYDALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~-~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
..|+++|+.=| ..-.+|.-|-..|++-|.++++..+.+.. .+...-. +..+.+.+=+|++..+ +-.+...|.+-.
T Consensus 100 ~~GD~vl~~~~--~YG~t~~~~~~~l~~~gi~~~~~d~~~~~-~~~~~~~~~~tk~v~lEtPsNP~l-~v~DI~~i~~~A 175 (396)
T COG0626 100 KAGDHVLLPDD--LYGGTYRLFEKILQKFGVEVTFVDPGDDE-ALEAAIKEPNTKLVFLETPSNPLL-EVPDIPAIARLA 175 (396)
T ss_pred CCCCEEEecCC--ccchHHHHHHHHHHhcCeEEEEECCCChH-HHHHHhcccCceEEEEeCCCCccc-ccccHHHHHHHH
Confidence 34777776555 34456666667777888888876554442 2222222 5778888888988766 467899999999
Q ss_pred HCCCcEEEEeCCCCc
Q 014568 106 DSGHDLIVAADSNAS 120 (422)
Q Consensus 106 ~~GGNlLi~~~~~~~ 120 (422)
++-| ++++.|.+-.
T Consensus 176 ~~~g-~~vvVDNTfa 189 (396)
T COG0626 176 KAYG-ALVVVDNTFA 189 (396)
T ss_pred HhcC-CEEEEECCcc
Confidence 8888 8888887653
No 100
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=30.68 E-value=53 Score=25.89 Aligned_cols=28 Identities=11% Similarity=0.256 Sum_probs=19.5
Q ss_pred ccccCCCceEEEEEecCCceeeeEEEEe
Q 014568 338 TLSTDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 338 ~l~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
.|++.++|.|+++..+|.--=-|+|.||
T Consensus 29 ~m~~~~~G~w~~~~~l~~G~y~Ykf~vd 56 (82)
T cd02861 29 PMEREGDGLWVVTVELRPGRYEYKFVVD 56 (82)
T ss_pred cCEECCCCcEEEEEeCCCCcEEEEEEEC
Confidence 4555667999999988762114888876
No 101
>COG1744 Med Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein [General function prediction only]
Probab=30.39 E-value=6e+02 Score=25.92 Aligned_cols=44 Identities=27% Similarity=0.349 Sum_probs=34.7
Q ss_pred cHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEec
Q 014568 97 DVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDH 145 (422)
Q Consensus 97 e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~~~~~VvD~ 145 (422)
-.+.+.++.++|-+++++.+....+.+..++.|+ |+-...++|.
T Consensus 86 ~~~~~~~~a~~g~~lI~~~gf~~~d~~~~va~~~-----Pd~~F~iid~ 129 (345)
T COG1744 86 YERALRALAEDGYDLIFGTGFAFSDALEKVAAEY-----PDVKFVIIDG 129 (345)
T ss_pred HHHHHHHHHhcCCCEEEEeccchhhHHHHHHHHC-----CCCEEEEecC
Confidence 3466777888999999999999999999999999 4423455664
No 102
>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional
Probab=30.25 E-value=1.2e+02 Score=32.45 Aligned_cols=82 Identities=13% Similarity=0.230 Sum_probs=56.1
Q ss_pred EEeCCCCCCC-CCCccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCccccCCCCCceEEe
Q 014568 83 VLFCPSVERF-GGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIA 161 (422)
Q Consensus 83 VI~~p~~~~~-~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv 161 (422)
+|..++.+++ ..-.|.-.-.-|+.+||+|+|+.+-...+.+=.+.--..|+-+|. -.+.|+.-=|.-+.+..+.++++
T Consensus 264 il~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~~~~~~~~~p~~~~r~niytdp~-~p~~v~~g~y~~g~p~~~spv~~ 342 (450)
T PRK04165 264 IIAFPIEAWMSDPMKEAAIASTLIAKYADILVLHDIEPWELLPLLTLRQNIYTDPQ-KPVAVEPGIYEIGNPDENSPVLV 342 (450)
T ss_pred EEEcchhhcccchHHHHHHHHHHHHhCCcEEEEcCCCHHHHhhHHHHHHhccCCCC-CCeecCCCceeCCCCCCCCCEEE
Confidence 4445555544 334566666789999999999988776666767777889999998 55677775555443333445666
Q ss_pred eccc
Q 014568 162 SDDF 165 (422)
Q Consensus 162 ~~~~ 165 (422)
+.|+
T Consensus 343 t~nf 346 (450)
T PRK04165 343 TTNF 346 (450)
T ss_pred Eeee
Confidence 6654
No 103
>PF15260 FAM219A: Protein family FAM219A
Probab=29.78 E-value=37 Score=29.55 Aligned_cols=46 Identities=20% Similarity=0.247 Sum_probs=29.6
Q ss_pred CCCCCeE-EEEEcCccccc----ch-----------hHHHHHHHhCCceEEEeeCCCCCcccc
Q 014568 26 NPTDRRV-LVLVDDFAIKS----SH-----------SLYFGSLTSRGFQLEFKLADDPNIGLQ 72 (422)
Q Consensus 26 ~~~~~r~-LVlld~~~~~~----~~-----------S~f~~~L~~rG~~v~~~~~~d~~l~L~ 72 (422)
+.+++.. ||=+|...+.+ .| -.+..+|-+-||.++. .|+|++|.|.
T Consensus 43 ~qs~de~pLVSLDSDSd~e~~~s~~sssg~ssaq~~q~l~~QLlkDGy~LDE-~pDdEdLDLI 104 (125)
T PF15260_consen 43 SQSPDENPLVSLDSDSDEELEMSRYSSSGYSSAQVNQDLSQQLLKDGYRLDE-IPDDEDLDLI 104 (125)
T ss_pred ccCcccCcccccccCchhhhhhhhcccccccHHHHhHHHHHHHHhccccccc-CCchhccccC
Confidence 3344444 99998654421 12 2356778889999987 4788766665
No 104
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=29.68 E-value=2.3e+02 Score=26.70 Aligned_cols=84 Identities=15% Similarity=0.150 Sum_probs=49.4
Q ss_pred HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE-EEeCCCCcHHHHH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIRE 125 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL-i~~~~~~~~~l~~ 125 (422)
.+.+.|+++|+++.....+...+.....-...||.|||.+.....--...+.+.+++.++++--+| |-. +...
T Consensus 15 ~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~------G~Ql 88 (214)
T PRK07765 15 NLVQYLGQLGVEAEVWRNDDPRLADEAAVAAQFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCL------GHQA 88 (214)
T ss_pred HHHHHHHHcCCcEEEEECCCcCHHHHHHhhcCCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEcc------CHHH
Confidence 577889999999998755432111111112468999997554321101235567777777776666 332 3556
Q ss_pred HHHHcCceecC
Q 014568 126 VATECGVDFDE 136 (422)
Q Consensus 126 ll~elGI~~~~ 136 (422)
++..+|-.+.+
T Consensus 89 la~a~GG~v~~ 99 (214)
T PRK07765 89 IGVAFGATVDR 99 (214)
T ss_pred HHHHhCCEEee
Confidence 77777755543
No 105
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=29.57 E-value=2e+02 Score=24.99 Aligned_cols=55 Identities=16% Similarity=0.073 Sum_probs=34.1
Q ss_pred EEEcCcccccchhHHHHHHHhCCceEEEeeCCCCC-------cccccc------CccccCEEEEeCCC
Q 014568 34 VLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-------IGLQRY------GQYLYDALVLFCPS 88 (422)
Q Consensus 34 Vlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~-------l~L~~~------g~~~yd~LVI~~p~ 88 (422)
+++-+.-...++....+-|+..||++.+.+++... +.+... ....||.|||....
T Consensus 3 il~~~gf~~~e~~~~~~~~~~a~~~v~~vs~~~~~~~~~~~g~~v~~~~~~~~~~~~~~D~liipGg~ 70 (163)
T cd03135 3 VILADGFEEIEAVTPVDVLRRAGIEVTTASLEKKLAVGSSHGIKVKADKTLSDVNLDDYDAIVIPGGL 70 (163)
T ss_pred EEecCCcchHHHHHHHHHHHHCCCEEEEEEcCCCceEeccCCCEEEecCCHhHcCCCCCCEEEECCCC
Confidence 34433335566778888999999999987655432 112111 12578999886543
No 106
>PRK08811 uroporphyrinogen-III synthase; Validated
Probab=29.41 E-value=2.4e+02 Score=27.52 Aligned_cols=63 Identities=11% Similarity=0.051 Sum_probs=37.3
Q ss_pred ccCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEee------CCCCCccccccCccccCEEEEeCCCC
Q 014568 23 SPENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKL------ADDPNIGLQRYGQYLYDALVLFCPSV 89 (422)
Q Consensus 23 ~~~~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~------~~d~~l~L~~~g~~~yd~LVI~~p~~ 89 (422)
++.+.+|.|+||-=.. +.-+.+.+.|++.|.++-... +++..+.-.-..-..||.||+.++..
T Consensus 12 ~~~~l~g~~IlvTRp~----~q~~~l~~~L~~~G~~~~~~P~i~i~~~~~~~~~~~l~~l~~~d~iiftS~NA 80 (266)
T PRK08811 12 AATADAAWTLISLRPS----GEHAPLRRAVARHGGRLLALSPWRLQRLDTAQARDALRQALAAPIVVFTSPAA 80 (266)
T ss_pred CCcCCCCCEEEEeCCH----HHHHHHHHHHHHCCCcEEEcCceeecCCCchhHHHHHhhcccCCEEEEECHHH
Confidence 3566788888775332 344689999999999987541 11111110001114788888877644
No 107
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=29.26 E-value=1.1e+02 Score=23.63 Aligned_cols=53 Identities=15% Similarity=0.401 Sum_probs=34.2
Q ss_pred eeeecccCCeEEEEEEeC--ceEeeccc-cCCCceEEEEEecCCcee--eeEEEEeeee
Q 014568 315 SWEPYVSDDVQVQFYMMS--PYVLKTLS-TDQKGHYSAEFKVPDVYG--VFQFKVEYQR 368 (422)
Q Consensus 315 ~w~P~~~~d~QlEf~mld--Py~R~~l~-~~~~~~y~~~f~~PD~hG--vf~f~v~Y~R 368 (422)
-|.|- |+.|.|-+.--+ |..+..|+ ..+.|.++++..-.=.+| -|+|+|+...
T Consensus 17 vwaP~-A~~V~l~~~~~~~~~~~~~~m~~~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~~ 74 (85)
T PF02922_consen 17 VWAPN-AKSVELVLYFNGSWPAEEYPMTRKDDDGVWEVTVPGDLPPGGYYYKYRIDGDD 74 (85)
T ss_dssp EE-TT-ESEEEEEEETTTSSEEEEEEEEEECTTTEEEEEEEGCGTTTT-EEEEEEEETT
T ss_pred EECCC-CCEEEEEEEeeecCCCceEEeeecCCCCEEEEEEcCCcCCCCEEEEEEEEeCC
Confidence 35553 455666555544 45667777 578999999887422333 7899998765
No 108
>PLN02625 uroporphyrin-III C-methyltransferase
Probab=29.23 E-value=2.5e+02 Score=27.26 Aligned_cols=117 Identities=12% Similarity=0.053 Sum_probs=59.0
Q ss_pred CCCeEEEEEcCc-ccccchhHHHHHHHhCCceEEEeeCCCCCcc--ccccCcccc-----CEEEEeCCCCCCCCCCccHH
Q 014568 28 TDRRVLVLVDDF-AIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY-----DALVLFCPSVERFGGSIDVA 99 (422)
Q Consensus 28 ~~~r~LVlld~~-~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~--L~~~g~~~y-----d~LVI~~p~~~~~~~~~e~~ 99 (422)
.|+++.++..+. ..-..++.....|++.|.+++.. |.=++++ ....|.+.. +.+.+.+...+.-. ..+..
T Consensus 91 ~g~~Vvvl~~GDP~~ys~~~~l~~~l~~~~~~veii-PGISS~~aaaA~lg~pl~~~~~~~~~~i~s~h~~~~~-~~~~~ 168 (263)
T PLN02625 91 AGKTVVRLKGGDPLVFGRGGEEMDALRKNGIPVTVV-PGITAAIGAPAELGIPLTHRGVATSVRFLTGHDREGG-TDPLD 168 (263)
T ss_pred CCCeEEEEcCCCchhhhhHHHHHHHHHHCCCCEEEE-CCccHHHHHHHHcCCCcccCCccceEEEEecccCCCc-ccchh
Confidence 356666665432 23345555667888889888875 3322222 235555544 25666654333111 11112
Q ss_pred HHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecCCCCeEEEeccCc
Q 014568 100 SIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDEDPAAMVIDHINY 148 (422)
Q Consensus 100 ~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~~~~~~VvD~f~~ 148 (422)
.+....+.++.+.++..+.....+...|.+.|+..+-. ..+...-.+
T Consensus 169 ~~~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g~~~~~~--v~v~e~l~~ 215 (263)
T PLN02625 169 VAEAAADPDTTLVVYMGLGTLPSLAEKLIAAGLPPDTP--AAAVERGTT 215 (263)
T ss_pred hHHHHhCCCCeEEEECchhhHHHHHHHHHHcCCCCCCe--EEEEEECCC
Confidence 23333434445555555555566777777777743322 345444333
No 109
>TIGR01680 Veg_Stor_Prot vegetative storage protein. The proteins represented by this model are close relatives of the plant acid phosphatases (TIGR01675), are limited to members of the Phaseoleae including Glycine max (soybean) and Phaseolus vulgaris (kidney bean). These proteins are highly expressed in the leaves of repeatedly depodded plants. VSP differs most strinkingly from the acid phosphatases in the lack of the conserved nucleophilic aspartate residue in the N-terminus, thus, they should be inactive as phosphatases. This issue was confused by the publication in 1992 of an article claiming activity for the Glycine max VSP. In 1994 this assertion was refuted by the separation of the activity from the VSP.
Probab=29.14 E-value=1.7e+02 Score=29.17 Aligned_cols=71 Identities=17% Similarity=0.305 Sum_probs=47.6
Q ss_pred HHHHHHHhCCceEEEeeCCCCC------ccccccCccccCEEEEeCCCCCCCCCCccH--HHHHHHHHCCCcEEEEeCC
Q 014568 47 LYFGSLTSRGFQLEFKLADDPN------IGLQRYGQYLYDALVLFCPSVERFGGSIDV--ASIVDFVDSGHDLIVAADS 117 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~------l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~--~~L~~Fi~~GGNlLi~~~~ 117 (422)
.|.+.|.++|++|-+.+..++. -+|.+.|.+.+++|++=++....-....+. +.-.+.+++|=+|....+.
T Consensus 152 ~ly~~l~~~G~kIf~VSgR~e~~r~aT~~NL~kaGy~~~~~LiLR~~~D~~~~~av~yKs~~R~~li~eGYrIv~~iGD 230 (275)
T TIGR01680 152 KNYNKLVSLGFKIIFLSGRLKDKQAVTEANLKKAGYHTWEKLILKDPQDNSAENAVEYKTAARAKLIQEGYNIVGIIGD 230 (275)
T ss_pred HHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHHcCCCCcceeeecCCCCCccchhHHHHHHHHHHHHHcCceEEEEECC
Confidence 4778899999999988766642 247788998899999976642111111222 3446667788898866544
No 110
>PRK09739 hypothetical protein; Provisional
Probab=28.86 E-value=2.4e+02 Score=25.91 Aligned_cols=36 Identities=14% Similarity=0.009 Sum_probs=23.2
Q ss_pred CeEEEEEcCcccc----cchhHHHHHHHhCCceEEEeeCC
Q 014568 30 RRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLAD 65 (422)
Q Consensus 30 ~r~LVlld~~~~~----~~~S~f~~~L~~rG~~v~~~~~~ 65 (422)
.|+|++.-++... ..-..|.+.|+++|++++.....
T Consensus 4 mkiliI~~sp~~~s~s~~l~~~~~~~~~~~g~~v~~~dL~ 43 (199)
T PRK09739 4 MRIYLVWAHPRHDSLTAKVAEAIHQRAQERGHQVEELDLY 43 (199)
T ss_pred ceEEEEEcCCCCCCcHHHHHHHHHHHHHHCCCEEEEEEhh
Confidence 4677777544321 22345888899999999876433
No 111
>TIGR01467 cobI_cbiL precorrin-2 C20-methyltransferase. This model represents precorrin-2 C20-methyltransferase, one of several closely related S-adenosylmethionine-dependent methyltransferases involved in cobalamin (vitamin B12) biosynthesis.
Probab=28.68 E-value=2.9e+02 Score=25.94 Aligned_cols=97 Identities=16% Similarity=0.200 Sum_probs=57.6
Q ss_pred CCCeEEEEEcCc-ccccchhHHHHHHHhCCceEEEeeCCCCCcc--ccccCcccc---CEEEEeCCCCCCCCCCccHHHH
Q 014568 28 TDRRVLVLVDDF-AIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY---DALVLFCPSVERFGGSIDVASI 101 (422)
Q Consensus 28 ~~~r~LVlld~~-~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~--L~~~g~~~y---d~LVI~~p~~~~~~~~~e~~~L 101 (422)
.|+++.++..+. ..-..+....+.|.++|.+++.. |.=++++ ....|.+.. ..+.+. +... ....+
T Consensus 89 ~g~~Vv~l~~GDP~~y~~~~~l~~~~~~~~~~vevi-PGiSs~~~a~a~~g~~l~~~~~~~~~~-~~~~------~~~~~ 160 (230)
T TIGR01467 89 EGRDVAFLTLGDPSLYSTFSYLLQRLQGMGIEVEVV-PGITSFAACASAAGLPLVEGDESLAIL-PATA------GEAEL 160 (230)
T ss_pred CCCcEEEEeCCCCCcccCHHHHHHHHHHCCCcEEEe-CChhHHHHHHHHhCCCcccCCceEEEE-eCCC------CHHHH
Confidence 466777776442 33345556667777778888765 3333222 234455422 233332 2211 12457
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 102 VDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 102 ~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.+.++.++.+.++.++...+.+...+.+.|.
T Consensus 161 ~~~~~~~~~vvil~~~~~~~~i~~~L~~~g~ 191 (230)
T TIGR01467 161 EKALAEFDTVVLMKVGRNLPQIKEALAKLGR 191 (230)
T ss_pred HHHhccCCeEEEEecCCCHHHHHHHHHHcCC
Confidence 7888999998888777666667788888886
No 112
>PF04244 DPRP: Deoxyribodipyrimidine photo-lyase-related protein; InterPro: IPR007357 This family appears to be related to DNA photolyases.; PDB: 3ZXS_A.
Probab=28.18 E-value=1.1e+02 Score=29.42 Aligned_cols=39 Identities=18% Similarity=0.286 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCcccc--------------cchhHHHHHHHhCCceEEEeeCCC
Q 014568 28 TDRRVLVLVDDFAIK--------------SSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 28 ~~~r~LVlld~~~~~--------------~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
.....+++++...+- ..--.|.+.|+++||+|.+...++
T Consensus 20 ~~~~~v~mvE~~~~~~~~~~HkqKl~l~~saMRhfa~~L~~~G~~V~Y~~~~~ 72 (224)
T PF04244_consen 20 PADDRVLMVEVPEEFTYVPHHKQKLVLFFSAMRHFADELRAKGFRVHYIELDD 72 (224)
T ss_dssp TTT-EEEEE--HHHHHSS---HHHHHHHHHHHHHHHHHHHHTT--EEEE-TT-
T ss_pred CCCCEEEEEEchHHhCcCcccHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 345566666765441 344469999999999999975554
No 113
>COG3470 Tpd Uncharacterized protein probably involved in high-affinity Fe2+ transport [Inorganic ion transport and metabolism]
Probab=28.04 E-value=76 Score=28.97 Aligned_cols=22 Identities=27% Similarity=0.726 Sum_probs=14.3
Q ss_pred CCceEEEEEEEEEeC-------Ceeeecc
Q 014568 299 NDDLEYSVEIYEWSG-------TSWEPYV 320 (422)
Q Consensus 299 ~d~v~y~i~i~e~~~-------~~w~P~~ 320 (422)
+-|++-+.+|.-..+ |.|+||-
T Consensus 64 ~aDiHlEADIha~~~n~nGfg~Gew~pYL 92 (179)
T COG3470 64 EADIHLEADIHALKGNKNGFGEGEWVPYL 92 (179)
T ss_pred hccceeeeehhccccCCCCcCcccccceE
Confidence 346677777766633 5788883
No 114
>PF11869 DUF3389: Protein of unknown function (DUF3389); InterPro: IPR021811 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are about 80 amino acids in length.
Probab=27.43 E-value=71 Score=25.46 Aligned_cols=30 Identities=23% Similarity=0.598 Sum_probs=22.9
Q ss_pred HHHCCCcEEEEeCCC--------CcHHHHHHHHHcCcee
Q 014568 104 FVDSGHDLIVAADSN--------ASDLIREVATECGVDF 134 (422)
Q Consensus 104 Fi~~GGNlLi~~~~~--------~~~~l~~ll~elGI~~ 134 (422)
++. |.|++++-+.. ..+.++.+++|+||..
T Consensus 37 li~-~anvi~A~g~~vkWSikLD~eeQL~~ia~~lGi~i 74 (75)
T PF11869_consen 37 LIG-GANVIIANGGEVKWSIKLDNEEQLQAIAEELGIDI 74 (75)
T ss_pred hcC-CCcEEEEeCcceEEEEEcCCHHHHHHHHHHhCccc
Confidence 454 88888876543 3578999999999975
No 115
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=27.39 E-value=2.1e+02 Score=25.14 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=50.4
Q ss_pred HHHHHHhCCceEEEeeCCCCCcccc-ccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC--cEEEEeCCC--Cc--
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLIVAADSN--AS-- 120 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG--NlLi~~~~~--~~-- 120 (422)
....|++.||+|-....+-+.-.+. ..-+.+.|.+-+-+-.+... ...+.+.+-+++-| ++.|+.+-. .+
T Consensus 19 v~~~L~~~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~L~t~~~---~~~~~~~~~l~~~gl~~v~vivGG~~~i~~~ 95 (128)
T cd02072 19 LDHAFTEAGFNVVNLGVLSPQEEFIDAAIETDADAILVSSLYGHGE---IDCKGLREKCDEAGLKDILLYVGGNLVVGKQ 95 (128)
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccCCH---HHHHHHHHHHHHCCCCCCeEEEECCCCCChh
Confidence 5568999999998865544422222 22235667777655444433 24566666665554 554443322 22
Q ss_pred --HHHHHHHHHcCce--ecCC
Q 014568 121 --DLIREVATECGVD--FDED 137 (422)
Q Consensus 121 --~~l~~ll~elGI~--~~~~ 137 (422)
+.-++.|.++|+. +.|+
T Consensus 96 d~~~~~~~L~~~Gv~~vf~pg 116 (128)
T cd02072 96 DFEDVEKRFKEMGFDRVFAPG 116 (128)
T ss_pred hhHHHHHHHHHcCCCEEECcC
Confidence 3355789999996 5553
No 116
>PRK11104 hemG protoporphyrinogen oxidase; Provisional
Probab=27.26 E-value=1.5e+02 Score=26.95 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=43.5
Q ss_pred eEEEEEcCc-ccccchhH-HHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-
Q 014568 31 RVLVLVDDF-AIKSSHSL-YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS- 107 (422)
Q Consensus 31 r~LVlld~~-~~~~~~S~-f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~- 107 (422)
|+||+|.+. +......+ ..+.|+. |++++....++.. ...-..||.+||-+|... + .. ...+.+|+++
T Consensus 2 kilIvY~S~~G~T~~iA~~Ia~~l~~-g~~v~~~~~~~~~----~~~l~~yD~vIlGspi~~--G-~~-~~~~~~fl~~~ 72 (177)
T PRK11104 2 KTLILYSSRDGQTRKIASYIASELKE-GIQCDVVNLHRIE----EPDLSDYDRVVIGASIRY--G-HF-HSALYKFVKKH 72 (177)
T ss_pred cEEEEEECCCChHHHHHHHHHHHhCC-CCeEEEEEhhhcC----ccCHHHCCEEEEECcccc--C-Cc-CHHHHHHHHHH
Confidence 689999875 33333343 4566776 8888865444321 112345899888888643 3 22 3556666633
Q ss_pred -----CCcEEEEe
Q 014568 108 -----GHDLIVAA 115 (422)
Q Consensus 108 -----GGNlLi~~ 115 (422)
|-++.+.+
T Consensus 73 ~~~l~~K~v~~F~ 85 (177)
T PRK11104 73 ATQLNQMPSAFFS 85 (177)
T ss_pred HHHhCCCeEEEEE
Confidence 44555444
No 117
>PF12724 Flavodoxin_5: Flavodoxin domain
Probab=27.13 E-value=2.5e+02 Score=24.37 Aligned_cols=53 Identities=13% Similarity=0.123 Sum_probs=32.0
Q ss_pred EEEEcCc-ccccchh-HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCC
Q 014568 33 LVLVDDF-AIKSSHS-LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE 90 (422)
Q Consensus 33 LVlld~~-~~~~~~S-~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~ 90 (422)
||+|++. +....+. .+.+.|.++|..++....... ...-..||.+|+.+|--.
T Consensus 1 LIvY~S~~G~Tk~~A~~ia~~l~~~~~~v~~~~~~~~-----~~~~~~yD~vi~gspiy~ 55 (143)
T PF12724_consen 1 LIVYFSKTGNTKKIAEWIAEKLGEEGELVDLEKVEED-----EPDLSDYDAVIFGSPIYA 55 (143)
T ss_pred CEEEECCCchHHHHHHHHHHHHhhhccEEEHHhhhhc-----ccccccCCEEEEEEEEEC
Confidence 5777764 3222333 366678778888876532111 223467799999999654
No 118
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=27.10 E-value=2.6e+02 Score=24.15 Aligned_cols=83 Identities=17% Similarity=0.285 Sum_probs=49.2
Q ss_pred CeEEEEEcCcccccc-hhHHHHHHHhCCceEEEeeCCCCCccccccC-cccc-CEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 30 RRVLVLVDDFAIKSS-HSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 30 ~r~LVlld~~~~~~~-~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~y-d~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
.|||+++-++..+.. -....+.|++.||++.-. ..+.|.... +.-| +| + + .-..+.|.+|+.
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~----k~~~ls~~~a~~~y~~~------~----~-k~~~~~l~~~m~ 65 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVAL----KMLQLTEELAEEHYAEH------K----G-KPFFPELVEFMT 65 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEe----eeccCCHHHHHHHhhhh------c----C-CchHHHHHHHHh
Confidence 489999988766433 367899999999999853 112233222 1233 22 1 1 124578999998
Q ss_pred CCCcEEEEeC-CCCcHHHHHHH
Q 014568 107 SGHDLIVAAD-SNASDLIREVA 127 (422)
Q Consensus 107 ~GGNlLi~~~-~~~~~~l~~ll 127 (422)
.|.-+.+... ++.-+.+|.++
T Consensus 66 sgp~~al~l~~~nav~~~r~l~ 87 (130)
T cd04413 66 SGPVVAMVLEGENAVKTVRKLM 87 (130)
T ss_pred cCCEEEEEEeCCcHHHHHHHHh
Confidence 8876654443 33333445444
No 119
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=27.10 E-value=1.9e+02 Score=29.64 Aligned_cols=58 Identities=10% Similarity=0.168 Sum_probs=36.3
Q ss_pred ccccCEEEEeCCCCC-CCC--C-C----------ccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 014568 76 QYLYDALVLFCPSVE-RFG--G-S----------IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~-~~~--~-~----------~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~ 133 (422)
+-.||.|||+..... .++ + . .+.+.|.+.+..|.+++|+++....-.+-..+.+.|.+
T Consensus 98 ~~~yd~LViATGs~~~~~p~~~~~~~~v~~~~~~~da~~l~~~~~~~~~vvViGgG~ig~E~A~~l~~~g~~ 169 (396)
T PRK09754 98 SWHWDQLFIATGAAARPLPLLDALGERCFTLRHAGDAARLREVLQPERSVVIVGAGTIGLELAASATQRRCK 169 (396)
T ss_pred EEEcCEEEEccCCCCCCCCCCCcCCCCEEecCCHHHHHHHHHHhhcCCeEEEECCCHHHHHHHHHHHHcCCe
Confidence 477899999887553 121 0 0 13345667777888999887664444455566666653
No 120
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=27.09 E-value=3.1e+02 Score=24.01 Aligned_cols=84 Identities=14% Similarity=0.086 Sum_probs=51.0
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcccc-ccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC--cEE-EEeCC-----
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLI-VAADS----- 117 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG--NlL-i~~~~----- 117 (422)
.+.-.|+.+||++.+...+-+.-.+. .-.+...|.+.|....... ....+.+.+-+.+-| ++. ++++.
T Consensus 22 iv~~~lr~~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~~~---~~~~~~~~~~L~~~~~~~~~i~vGG~~~~~~ 98 (137)
T PRK02261 22 ILDRALTEAGFEVINLGVMTSQEEFIDAAIETDADAILVSSLYGHG---EIDCRGLREKCIEAGLGDILLYVGGNLVVGK 98 (137)
T ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcCccccC---HHHHHHHHHHHHhcCCCCCeEEEECCCCCCc
Confidence 46678999999999976554422232 2223556777775554442 235567777776653 343 33332
Q ss_pred CCcHHHHHHHHHcCce
Q 014568 118 NASDLIREVATECGVD 133 (422)
Q Consensus 118 ~~~~~l~~ll~elGI~ 133 (422)
..++..++-++++|++
T Consensus 99 ~~~~~~~~~l~~~G~~ 114 (137)
T PRK02261 99 HDFEEVEKKFKEMGFD 114 (137)
T ss_pred cChHHHHHHHHHcCCC
Confidence 2246677899999974
No 121
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=26.75 E-value=1.7e+02 Score=29.45 Aligned_cols=78 Identities=18% Similarity=0.142 Sum_probs=47.4
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEE--EeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccH-------HH
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLE--FKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDV-------AS 100 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~--~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~-------~~ 100 (422)
+.-+.++|.... --..-...|+..+.+-. +. -++....+..||.+|-.||=.+.. ..+. ..
T Consensus 182 ~~~vtmvDvn~~--Av~~ar~Nl~~N~~~~~~v~~------s~~~~~v~~kfd~IisNPPfh~G~--~v~~~~~~~~i~~ 251 (300)
T COG2813 182 QAKLTLVDVNAR--AVESARKNLAANGVENTEVWA------SNLYEPVEGKFDLIISNPPFHAGK--AVVHSLAQEIIAA 251 (300)
T ss_pred CCeEEEEecCHH--HHHHHHHhHHHcCCCccEEEE------ecccccccccccEEEeCCCccCCc--chhHHHHHHHHHH
Confidence 556777776422 11123345554444431 22 245666667999999999976633 4444 33
Q ss_pred HHHHHHCCCcEEEEeCC
Q 014568 101 IVDFVDSGHDLIVAADS 117 (422)
Q Consensus 101 L~~Fi~~GGNlLi~~~~ 117 (422)
=.+++..||.|+|....
T Consensus 252 A~~~L~~gGeL~iVan~ 268 (300)
T COG2813 252 AARHLKPGGELWIVANR 268 (300)
T ss_pred HHHhhccCCEEEEEEcC
Confidence 45788999999988873
No 122
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=26.49 E-value=2e+02 Score=26.45 Aligned_cols=91 Identities=13% Similarity=0.226 Sum_probs=50.4
Q ss_pred CCCeEEEEEcCcccc-cchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 28 TDRRVLVLVDDFAIK-SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 28 ~~~r~LVlld~~~~~-~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
...||||++-+...+ ..-....+.++++||.|.-. +-..|.... +.-| ......++-+ .--.+.|++|+
T Consensus 4 ~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~----k~~~lt~e~a~~fY----~~~~~~~h~g-k~ff~~Lv~~m 74 (169)
T PRK14543 4 LIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAA----KMLLVDRSMAEKHY----LYDDIAVRHG-EAVWKSLIKFI 74 (169)
T ss_pred ccceEEEEECcchhhcCchHHHHHHHHHCCCEEEee----eeccCCHHHHHHHh----ccCccccccC-CchHHHHHHHH
Confidence 457999999887664 44478999999999999853 011222111 1111 0001111122 22457899999
Q ss_pred HCCCcEE-EEeCCCCcHHHHHHH
Q 014568 106 DSGHDLI-VAADSNASDLIREVA 127 (422)
Q Consensus 106 ~~GGNlL-i~~~~~~~~~l~~ll 127 (422)
-.|--+. ++.+++.-..+|.++
T Consensus 75 tsGP~valvl~g~naI~~~R~l~ 97 (169)
T PRK14543 75 SSSPVFVFVVEGVESVEVVRKFC 97 (169)
T ss_pred ccCCeEEEEEECCCHHHHHHHHh
Confidence 8775444 333443334455554
No 123
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=26.44 E-value=53 Score=28.25 Aligned_cols=79 Identities=22% Similarity=0.129 Sum_probs=41.0
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCC-----CCCCCCCCccHHHHHHHH
Q 014568 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCP-----SVERFGGSIDVASIVDFV 105 (422)
Q Consensus 32 ~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p-----~~~~~~~~~e~~~L~~Fi 105 (422)
++|.-|.-......-+..+.|+.-- ++.....++ +.... +..+|.||+ |. ..+.+.+. ..+.|++|+
T Consensus 2 v~VY~g~g~~~~~~~~~~~~L~~~~-~v~~~~~~~----I~~~~~~~~ad~lVl-PGGa~~~~~~~L~~~-g~~~i~~~v 74 (114)
T cd03144 2 VLVYNGPGASPGSLKHLAELLRLYL-AVSTVTADE----LAVGPWESKTALLVV-PGGADLPYCRALNGK-GNRRIRNFV 74 (114)
T ss_pred EEEEeCCCCCHHHHHHHHHHHhhcc-ceeeecHHH----HhcCchhhCCCEEEE-CCCChHHHHHHHHhh-CcHHHHHHH
Confidence 3443344334444455666666533 344321111 11111 246787766 32 11223222 378999999
Q ss_pred HCCCcEE-EEeCC
Q 014568 106 DSGHDLI-VAADS 117 (422)
Q Consensus 106 ~~GGNlL-i~~~~ 117 (422)
++||.+| |-++-
T Consensus 75 ~~g~p~LGIClGA 87 (114)
T cd03144 75 RNGGNYLGICAGA 87 (114)
T ss_pred HCCCcEEEEecCc
Confidence 9999999 66554
No 124
>TIGR00768 rimK_fam alpha-L-glutamate ligases, RimK family. This family, related to bacterial glutathione synthetases, contains at least two different alpha-L-glutamate ligases. One is RimK, as in E. coli, which adds additional Glu residues to the native Glu-Glu C-terminus of ribosomal protein S6, but not to Lys-Glu mutants. Most species with a member of this subfamily lack an S6 homolog ending in Glu-Glu, however. Members in Methanococcus jannaschii act instead as a tetrahydromethanopterin:alpha-l-glutamate ligase (MJ0620) and a gamma-F420-2:alpha-l-glutamate ligase (MJ1001).
Probab=26.33 E-value=2.2e+02 Score=27.01 Aligned_cols=96 Identities=10% Similarity=0.119 Sum_probs=58.3
Q ss_pred EEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccC--ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC
Q 014568 32 VLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG--QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (422)
Q Consensus 32 ~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g--~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG 109 (422)
+.++.|.... +.-.+.+.|+++|+++....+++..+.+.... ...+|.++.-. .. ......+.+.++.-|
T Consensus 2 ~~~~~~~~~~--~~~~l~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~v~~r~--~~----~~~~~~~~~~l~~~g 73 (277)
T TIGR00768 2 LAILYDRIRL--DEKMLKEAAEELGIDYKVVTPPAIPLTFNEGPRELAELDVVIVRI--VS----MFRGLAVARYLESLG 73 (277)
T ss_pred EEEEEcCCCH--HHHHHHHHHHHcCCceEEEEhHHcEEeccCCCccCCCCCEEEEec--hh----HhhHHHHHHHHHHCC
Confidence 4566665332 56689999999999999887776544443211 34568766644 11 112346667777666
Q ss_pred cEEEEeCCC-----Cc-HHHHHHHHHcCceecC
Q 014568 110 DLIVAADSN-----AS-DLIREVATECGVDFDE 136 (422)
Q Consensus 110 NlLi~~~~~-----~~-~~l~~ll~elGI~~~~ 136 (422)
-- +..++. .. .....++++.||...+
T Consensus 74 ~~-~~~~~~~~~~~~dK~~~~~~l~~~gi~~P~ 105 (277)
T TIGR00768 74 VP-VINSSDAILNAGDKFLTSQLLAKAGLPQPR 105 (277)
T ss_pred Ce-eeCCHHHHHHHhhHHHHHHHHHHCCCCCCC
Confidence 33 333331 11 2457889999997654
No 125
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=25.73 E-value=78 Score=28.91 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=40.8
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcccc------ccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeC-CCC
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQ------RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAAD-SNA 119 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~------~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~-~~~ 119 (422)
.|.+.|.+.||+.-.. ..+.++.|. -+ .+.+|+++|++.-++ |.+ =++.|++ +|-.+.+.+. +..
T Consensus 70 ~l~~~l~~~Gf~pv~~-kG~~Dv~laIDame~~~-~~~iD~~vLvSgD~D-F~~--Lv~~lre---~G~~V~v~g~~~~t 141 (160)
T TIGR00288 70 KLIEAVVNQGFEPIIV-AGDVDVRMAVEAMELIY-NPNIDAVALVTRDAD-FLP--VINKAKE---NGKETIVIGAEPGF 141 (160)
T ss_pred HHHHHHHHCCceEEEe-cCcccHHHHHHHHHHhc-cCCCCEEEEEeccHh-HHH--HHHHHHH---CCCEEEEEeCCCCC
Confidence 4666777788886432 123332221 11 267788888887766 632 2333433 4666776663 345
Q ss_pred cHHHHHHHH
Q 014568 120 SDLIREVAT 128 (422)
Q Consensus 120 ~~~l~~ll~ 128 (422)
++.++.-+.
T Consensus 142 s~~L~~acd 150 (160)
T TIGR00288 142 STALQNSAD 150 (160)
T ss_pred hHHHHHhcC
Confidence 666665444
No 126
>PF15020 CATSPERD: Cation channel sperm-associated protein subunit delta
Probab=25.57 E-value=1.4e+02 Score=33.76 Aligned_cols=41 Identities=17% Similarity=0.275 Sum_probs=34.7
Q ss_pred EEecCCceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcccc
Q 014568 350 EFKVPDVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEYER 392 (422)
Q Consensus 350 ~f~~PD~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey~R 392 (422)
...-|++-|+|.|+|.---|-|||-+.+++.+|+- |-.+||
T Consensus 643 ~ii~~~~~g~YvF~~~ivDP~YSyC~L~t~Fai~v--~G~~P~ 683 (733)
T PF15020_consen 643 HIIWPQRNGIYVFRVKIVDPYYSYCNLTTIFAIYV--YGAIPR 683 (733)
T ss_pred eEEcCCCCeEEEEEEEEeCCCCCccceEEEEEEEE--eccCCc
Confidence 55567999999999999999999999999999975 344554
No 127
>PRK05670 anthranilate synthase component II; Provisional
Probab=25.18 E-value=2.6e+02 Score=25.50 Aligned_cols=93 Identities=12% Similarity=0.036 Sum_probs=48.0
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL 112 (422)
+.++|.. +..+ ....+.|+++|++++...++....... ....+|.|||.+......... ....+++-++++.-+|
T Consensus 2 iliid~~-d~f~-~~i~~~l~~~g~~~~v~~~~~~~~~~~--~~~~~dglIlsgGpg~~~d~~-~~~~~l~~~~~~~PvL 76 (189)
T PRK05670 2 ILLIDNY-DSFT-YNLVQYLGELGAEVVVYRNDEITLEEI--EALNPDAIVLSPGPGTPAEAG-ISLELIREFAGKVPIL 76 (189)
T ss_pred EEEEECC-CchH-HHHHHHHHHCCCcEEEEECCCCCHHHH--HhCCCCEEEEcCCCCChHHcc-hHHHHHHHhcCCCCEE
Confidence 4566765 1111 246778899999999876654322221 112379988865443211001 2233444454444444
Q ss_pred -EEeCCCCcHHHHHHHHHcCceecC
Q 014568 113 -VAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 113 -i~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
|- -+.+.++..+|=++.+
T Consensus 77 GIC------lG~Qlla~alGg~v~~ 95 (189)
T PRK05670 77 GVC------LGHQAIGEAFGGKVVR 95 (189)
T ss_pred EEC------HHHHHHHHHhCCEEEe
Confidence 22 2455666667744433
No 128
>TIGR01675 plant-AP plant acid phosphatase. This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.
Probab=25.10 E-value=2.3e+02 Score=27.43 Aligned_cols=69 Identities=9% Similarity=0.056 Sum_probs=45.7
Q ss_pred HHHHHHhCCceEEEeeCCCCC------ccccccCccccCEEEEeCCCCCCCCCCcc-HHHH-HHHHHCCCcEEEEeCC
Q 014568 48 YFGSLTSRGFQLEFKLADDPN------IGLQRYGQYLYDALVLFCPSVERFGGSID-VASI-VDFVDSGHDLIVAADS 117 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~------l~L~~~g~~~yd~LVI~~p~~~~~~~~~e-~~~L-~~Fi~~GGNlLi~~~~ 117 (422)
|.+.|+++|++|-+.+..++. -+|.+.|.+.+++|++-++..+ -....+ .... .+-+++|=+|....+.
T Consensus 128 l~~~l~~~G~~Vf~lTGR~e~~r~~T~~nL~~~G~~~~~~LiLR~~~d~-~~~~~~yKs~~R~~l~~~GYrIv~~iGD 204 (229)
T TIGR01675 128 LYQKIIELGIKIFLLSGRWEELRNATLDNLINAGFTGWKHLILRGLEDS-NKTVVTYKSEVRKSLMEEGYRIWGNIGD 204 (229)
T ss_pred HHHHHHHCCCEEEEEcCCChHHHHHHHHHHHHcCCCCcCeeeecCCCCC-CchHhHHHHHHHHHHHhCCceEEEEECC
Confidence 788999999999987766642 2477888888899998765332 111222 2334 4556677788865544
No 129
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=25.09 E-value=4e+02 Score=30.18 Aligned_cols=90 Identities=14% Similarity=0.008 Sum_probs=54.4
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG 109 (422)
.+.++|+|.. ... -..+.+.|+++|+++........ ..+. ....+|.|||.+.... .......+.|.+.++.|.
T Consensus 516 ~~~IlVID~g-ds~-~~~l~~~L~~~G~~v~vv~~~~~-~~~~--~~~~~DgLILsgGPGs-p~d~~~~~~I~~~~~~~i 589 (717)
T TIGR01815 516 GRRILLVDHE-DSF-VHTLANYLRQTGASVTTLRHSHA-EAAF--DERRPDLVVLSPGPGR-PADFDVAGTIDAALARGL 589 (717)
T ss_pred CCEEEEEECC-Chh-HHHHHHHHHHCCCeEEEEECCCC-hhhh--hhcCCCEEEEcCCCCC-chhcccHHHHHHHHHCCC
Confidence 4555566654 222 23678889999999986533321 1221 1245899988766543 222235677888888887
Q ss_pred cEE-EEeCCCCcHHHHHHHHHcC
Q 014568 110 DLI-VAADSNASDLIREVATECG 131 (422)
Q Consensus 110 NlL-i~~~~~~~~~l~~ll~elG 131 (422)
-+| |-. +..-++..+|
T Consensus 590 PvLGICL------G~QlLa~a~G 606 (717)
T TIGR01815 590 PVFGVCL------GLQGMVEAFG 606 (717)
T ss_pred CEEEECH------HHHHHhhhhC
Confidence 777 433 5666777776
No 130
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=25.08 E-value=1.9e+02 Score=26.43 Aligned_cols=95 Identities=15% Similarity=0.178 Sum_probs=55.8
Q ss_pred EEEEcCcccccchhHHHHHHHhCCc-eEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGF-QLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDL 111 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~-~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNl 111 (422)
++-+|..... .....+.+++.|. ++++...+-.+ +. .+..||.++..+ ...+ ..-.+.+.+.+..||.+
T Consensus 69 V~~iD~s~~~--~~~a~~~~~~~~~~~i~~i~~d~~~--~~--~~~~fD~I~s~~--~~~~--~~~~~~~~~~LkpgG~l 138 (181)
T TIGR00138 69 LTLLESNHKK--VAFLREVKAELGLNNVEIVNGRAED--FQ--HEEQFDVITSRA--LASL--NVLLELTLNLLKVGGYF 138 (181)
T ss_pred EEEEeCcHHH--HHHHHHHHHHhCCCCeEEEecchhh--cc--ccCCccEEEehh--hhCH--HHHHHHHHHhcCCCCEE
Confidence 5666754322 1122344455565 36655333222 21 245789655433 2212 11346678889999998
Q ss_pred EEEeCCCCcHHHHHHHHH---cCceecCC
Q 014568 112 IVAADSNASDLIREVATE---CGVDFDED 137 (422)
Q Consensus 112 Li~~~~~~~~~l~~ll~e---lGI~~~~~ 137 (422)
++.-++.....+..+.+. +|+++.+.
T Consensus 139 vi~~~~~~~~~~~~~~e~~~~~~~~~~~~ 167 (181)
T TIGR00138 139 LAYKGKKYLDEIEEAKRKCQVLGVEPLEV 167 (181)
T ss_pred EEEcCCCcHHHHHHHHHhhhhcCceEeec
Confidence 887777766777777777 79998886
No 131
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=25.01 E-value=2.8e+02 Score=24.81 Aligned_cols=84 Identities=13% Similarity=0.181 Sum_probs=49.8
Q ss_pred CCeEEEEEcCccccc-chhHHHHHHHhCCceEEEeeCCCCCccccccC-cccc-CEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 29 DRRVLVLVDDFAIKS-SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLY-DALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 29 ~~r~LVlld~~~~~~-~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~y-d~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
-.||||++-+...+. .-+...+.+++.||+|.-. ..+.|.+.. +.-| +| + + ..-.+.|.+|+
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~----k~~~lt~~~a~~fY~~~--------~--g-k~ff~~Lv~~m 66 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVAL----KMLQPTPEIAEEHYKEH--------K--G-KPFFPGLVKYI 66 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEe----EeecCCHHHHHHHHHHh--------c--C-CchHHHHHHHH
Confidence 369999998776643 3468999999999999853 012232211 1223 11 1 1 12457899999
Q ss_pred HCCCcEEEEe-CCCCcHHHHHHH
Q 014568 106 DSGHDLIVAA-DSNASDLIREVA 127 (422)
Q Consensus 106 ~~GGNlLi~~-~~~~~~~l~~ll 127 (422)
-.|--+.+.. +.+.-+.+|.++
T Consensus 67 ~sGp~val~l~g~nav~~~R~l~ 89 (149)
T PTZ00093 67 SSGPVVCMVWEGKNVVKQGRKLL 89 (149)
T ss_pred hcCCEEEEEEeCCCHHHHHHHHh
Confidence 8887655444 333333445554
No 132
>PF10611 DUF2469: Protein of unknown function (DUF2469); InterPro: IPR019592 This entry represents a group of proteins often found in Actinomycetes species, clustered with signal peptidase and/or RNAse-HII.
Probab=24.93 E-value=53 Score=27.28 Aligned_cols=44 Identities=32% Similarity=0.492 Sum_probs=34.5
Q ss_pred CceeeeEEEEeeeeccceeeeeeeeEeecCCCCCcc-cccccCCcch
Q 014568 355 DVYGVFQFKVEYQRLGYTSLSLSKQIPVRPYRHNEY-ERFLPAAYPY 400 (422)
Q Consensus 355 D~hGvf~f~v~Y~R~G~t~l~~~~~v~VR~~~hdey-~R~i~~a~py 400 (422)
|+-|.|+|.|.-.|..| |-..-.+.+|.-.+|-| +=.++.||+|
T Consensus 23 DVv~lF~yvVETeRRFY--LaN~Vd~~~r~~~g~vyfEv~m~DaWVW 67 (101)
T PF10611_consen 23 DVVGLFSYVVETERRFY--LANQVDVQVRSAGGDVYFEVSMSDAWVW 67 (101)
T ss_pred HHHhheeeEEEeeeeeE--eecceEEEEecCCCcEEEEEEecceEEE
Confidence 77899999999999875 56666677888777765 3349999987
No 133
>PF00781 DAGK_cat: Diacylglycerol kinase catalytic domain; InterPro: IPR001206 The DAG-kinase catalytic domain or DAGKc domain is present in mammalian lipid kinases, such as diacylglycerol (DAG), ceramide and sphingosine kinases, as well as in related bacterial proteins [, ]. Eukaryotic DAG-kinase (2.7.1.107 from EC) catalyses the phosphorylation of DAG to phosphatidic acid, thus modulating the balance between the two signaling lipids. At least ten different isoforms have been identified in mammals, which form 5 groups characterised by different functional domains, such as the calcium-binding EF hand (see PDOC00018 from PROSITEDOC), PH (see PDOC50003 from PROSITEDOC), SAM (see PDOC50105 from PROSITEDOC) , DAG/PE-binding C1 domain (see PDOC00379 from PROSITEDOC) and ankyrin repeats (see PDOC50088 from PROSITEDOC) []. In bacteria, an integral membrane DAG kinase forms a homotrimeric protein that lacks the DAGKc domain (see PDOC00820 from PROSITEDOC). In contrast, the bacterial yegS protein is a soluble cytosolic protein that contains the DAGKc domain in the N-terminal part. YegS is a lipid kinase with two structural domains, wherein the active site is located in the interdomain cleft, C-terminal to the DAGKc domain which forms an alpha/beta fold []. The tertiary structure resembles that of NAD kinases and contains a metal-binding site in the C-terminal region [, ]. This domain is usually associated with an accessory domain (see IPR000756 from INTERPRO).; GO: 0004143 diacylglycerol kinase activity, 0007205 activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway; PDB: 2JGR_A 2BON_A 3T5P_D 3S40_A 2P1R_A 2QV7_A 2QVL_A.
Probab=24.82 E-value=2.2e+02 Score=24.16 Aligned_cols=97 Identities=18% Similarity=0.221 Sum_probs=53.2
Q ss_pred eEEEEEcCcccccc--hhHHHHHHHhCCceEEEeeCCCCC--ccccc-cCcccc-CEEEEeCCCCCCCCCCccHHHHHHH
Q 014568 31 RVLVLVDDFAIKSS--HSLYFGSLTSRGFQLEFKLADDPN--IGLQR-YGQYLY-DALVLFCPSVERFGGSIDVASIVDF 104 (422)
Q Consensus 31 r~LVlld~~~~~~~--~S~f~~~L~~rG~~v~~~~~~d~~--l~L~~-~g~~~y-d~LVI~~p~~~~~~~~~e~~~L~~F 104 (422)
|++|++.+.+-+.. ..++...|+..|.+++......+. -.+.. .....+ |.+|+ .|++-+...+.+-
T Consensus 1 k~~vi~Np~sG~~~~~~~~v~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~ivv-------~GGDGTl~~vv~~ 73 (130)
T PF00781_consen 1 KVLVIINPKSGGGRAKWKKVEPALRAAGIDYEVIETESAGHAEALARILALDDYPDVIVV-------VGGDGTLNEVVNG 73 (130)
T ss_dssp SEEEEEETTSTTSHHHHHHHHHHHHHTTCEEEEEEESSTTHHHHHHHHHHHTTS-SEEEE-------EESHHHHHHHHHH
T ss_pred CEEEEECCCCCCCchhHHHHHHHHHHcCCceEEEEEeccchHHHHHHHHhhccCccEEEE-------EcCccHHHHHHHH
Confidence 68899988755332 347788888999888765333221 11222 222444 66666 3455567666666
Q ss_pred HHCCCc----EEEEeCCCCcHHHHHHHHHcCceecCC
Q 014568 105 VDSGHD----LIVAADSNASDLIREVATECGVDFDED 137 (422)
Q Consensus 105 i~~GGN----lLi~~~~~~~~~l~~ll~elGI~~~~~ 137 (422)
+-+-+. -+-..+-+. -+.|+..+|+...+.
T Consensus 74 l~~~~~~~~~~l~iiP~GT---~N~~ar~lg~~~~~~ 107 (130)
T PF00781_consen 74 LMGSDREDKPPLGIIPAGT---GNDFARSLGIPSDPE 107 (130)
T ss_dssp HCTSTSSS--EEEEEE-SS---S-HHHHHTT--SSHH
T ss_pred HhhcCCCccceEEEecCCC---hhHHHHHcCCCCCcH
Confidence 655554 333333333 346777777766654
No 134
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=24.80 E-value=50 Score=30.23 Aligned_cols=52 Identities=19% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEE
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDAL 82 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~L 82 (422)
.+|.|.++|+.. .-..++..+|+.|||+++....-.+.+.+.+...+.|-.|
T Consensus 8 pd~~lllvdDD~--~f~~~LaRa~e~RGf~v~~a~~~~eal~~art~~PayAvv 59 (182)
T COG4567 8 PDKSLLLVDDDT--PFLRTLARAMERRGFAVVTAESVEEALAAARTAPPAYAVV 59 (182)
T ss_pred CCceeEEecCCh--HHHHHHHHHHhccCceeEeeccHHHHHHHHhcCCCceEEE
Confidence 356788887642 2334677889999999997533333355556666666543
No 135
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=24.63 E-value=3.7e+02 Score=25.40 Aligned_cols=100 Identities=11% Similarity=0.063 Sum_probs=66.5
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCC-ccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~-l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
..+++.++..... +.--.-.+.|.+-|+.+-..+.+.+. +...+.-...|+.++|=+. .-++.+++.+.++.
T Consensus 3 ~~~vv~Vir~~~~-~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~~~~~vGAG------TVl~~e~a~~ai~a 75 (201)
T PRK06015 3 LQPVIPVLLIDDV-EHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEVEEAIVGAG------TILNAKQFEDAAKA 75 (201)
T ss_pred CCCEEEEEEcCCH-HHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHCCCCEEeeE------eCcCHHHHHHHHHc
Confidence 4677888765422 33335677888889877665444332 2222222233444555332 34588999999999
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcCceecCC
Q 014568 108 GHDLIVAADSNASDLIREVATECGVDFDED 137 (422)
Q Consensus 108 GGNlLi~~~~~~~~~l~~ll~elGI~~~~~ 137 (422)
|.+.++ +|...+.+-..++++||-..|+
T Consensus 76 GA~Fiv--SP~~~~~vi~~a~~~~i~~iPG 103 (201)
T PRK06015 76 GSRFIV--SPGTTQELLAAANDSDVPLLPG 103 (201)
T ss_pred CCCEEE--CCCCCHHHHHHHHHcCCCEeCC
Confidence 999874 5777788889999999999997
No 136
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=24.54 E-value=3.1e+02 Score=28.90 Aligned_cols=75 Identities=23% Similarity=0.102 Sum_probs=50.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCC-CCCccccccCccccCEEEEeCCCCC----CCCC-CccHHHHHH
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVE----RFGG-SIDVASIVD 103 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~-d~~l~L~~~g~~~yd~LVI~~p~~~----~~~~-~~e~~~L~~ 103 (422)
-|+-|..|. .....|..-++.|++.|.++.+..+- ++ .-+.||.|||=..... .+.. ..-.+.|++
T Consensus 246 ~~iava~d~-af~f~y~e~~~~L~~~g~~~~~~~~~~~~-------~l~~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~ 317 (451)
T PRK01077 246 VRIAVARDA-AFNFYYPENLELLRAAGAELVFFSPLADE-------ALPDCDGLYLGGGYPELFAAELAANTSMRASIRA 317 (451)
T ss_pred ceEEEEecC-cccccHHHHHHHHHHCCCEEEEeCCcCCC-------CCCCCCEEEeCCCchhhHHHHHhhCchhHHHHHH
Confidence 367777777 67788888899999999999987542 22 1247787777444311 1111 123588999
Q ss_pred HHHCCCcEE
Q 014568 104 FVDSGHDLI 112 (422)
Q Consensus 104 Fi~~GGNlL 112 (422)
|+++|+-|+
T Consensus 318 ~~~~g~~i~ 326 (451)
T PRK01077 318 AAAAGKPIY 326 (451)
T ss_pred HHHcCCCEE
Confidence 999998766
No 137
>COG0716 FldA Flavodoxins [Energy production and conversion]
Probab=24.54 E-value=2.4e+02 Score=24.75 Aligned_cols=74 Identities=16% Similarity=0.262 Sum_probs=45.6
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.++++++.+.. .+.-=....+.|..+|++++.....+.... ....||++++-.|... . +.+. ..+.+|++.
T Consensus 2 ~ki~Ivy~S~tGnTe~vA~~i~~~l~~~~~~~~~~~~~~~~~~----~~~~~d~~~~g~~t~~-~-ge~~-~~~~~f~~~ 74 (151)
T COG0716 2 MKILIVYGSRTGNTEKVAEIIAEELGADGFEVDIDIRPGIKDD----LLESYDELLLGTPTWG-A-GELP-DDWYDFIEE 74 (151)
T ss_pred CeEEEEEEcCCCcHHHHHHHHHHHhccCCceEEEeecCCcchh----hhccCCEEEEEeCCCC-C-CcCC-ccHHHHHHH
Confidence 46788886642 233333578889999999965422221111 1146788888777654 3 3445 788888877
Q ss_pred CCc
Q 014568 108 GHD 110 (422)
Q Consensus 108 GGN 110 (422)
+.+
T Consensus 75 ~~~ 77 (151)
T COG0716 75 LEP 77 (151)
T ss_pred hcc
Confidence 655
No 138
>PF15284 PAGK: Phage-encoded virulence factor
Probab=24.36 E-value=52 Score=25.16 Aligned_cols=30 Identities=10% Similarity=0.091 Sum_probs=16.1
Q ss_pred ChhhhHHHHHHHHHhhhhccccc--cCCCCCC
Q 014568 1 MAKLLLYLTLATSLIPLFSVAFS--PENPTDR 30 (422)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 30 (422)
|+.--.+.+.++|+|+.+++|++ |++.++.
T Consensus 1 Mkk~ksifL~l~~~LsA~~FSasamAa~~~~~ 32 (61)
T PF15284_consen 1 MKKFKSIFLALVFILSAAGFSASAMAADSSPH 32 (61)
T ss_pred ChHHHHHHHHHHHHHHHhhhhHHHHHHhhCCC
Confidence 44333344444567777777776 4444443
No 139
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=24.33 E-value=1.3e+02 Score=27.21 Aligned_cols=85 Identities=11% Similarity=0.006 Sum_probs=53.6
Q ss_pred hHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE-EEeCCCCcHHHH
Q 014568 46 SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIR 124 (422)
Q Consensus 46 S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL-i~~~~~~~~~l~ 124 (422)
..+.+.|++.|.+++....+........ ....||.+||.+.......-....+.+....+.+--+| |- =+..
T Consensus 11 ~~l~~~l~~~~~~~~v~~~~~~~~~~~~-~~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC------~G~Q 83 (192)
T PF00117_consen 11 HSLVRALRELGIDVEVVRVDSDFEEPLE-DLDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGIC------LGHQ 83 (192)
T ss_dssp HHHHHHHHHTTEEEEEEETTGGHHHHHH-HTTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEET------HHHH
T ss_pred HHHHHHHHHCCCeEEEEECCCchhhhhh-hhcCCCEEEECCcCCccccccccccccccccccceEEEEEe------ehhh
Confidence 3577889999999998755542112212 35678999998776652211223455555566677776 32 3677
Q ss_pred HHHHHcCceecCC
Q 014568 125 EVATECGVDFDED 137 (422)
Q Consensus 125 ~ll~elGI~~~~~ 137 (422)
-++..+|-++.+.
T Consensus 84 ~la~~~G~~v~~~ 96 (192)
T PF00117_consen 84 ILAHALGGKVVPS 96 (192)
T ss_dssp HHHHHTTHEEEEE
T ss_pred hhHHhcCCccccc
Confidence 8888888776653
No 140
>KOG4434 consensus Molecular chaperone SEC63, endoplasmic reticulum translocon component [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=24.32 E-value=70 Score=33.13 Aligned_cols=77 Identities=19% Similarity=0.385 Sum_probs=48.3
Q ss_pred eeecccCC-eEEEEEEeCceEeeccccCCCceEEEEEecCCceeeeEEEEeeeeccce---eee----eeeeEeecCCCC
Q 014568 316 WEPYVSDD-VQVQFYMMSPYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYT---SLS----LSKQIPVRPYRH 387 (422)
Q Consensus 316 w~P~~~~d-~QlEf~mldPy~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t---~l~----~~~~v~VR~~~h 387 (422)
|=-|++|- -|-=++| ||+-.||+ +...-...|.+|-+-|+|||.|--|---|- .+. +-...+-.|-.|
T Consensus 414 WW~Yi~drKsrtLlt~--PyhV~tL~--d~eei~lkF~AP~~pG~Ytytv~lrSDSYmg~dq~~~lKldV~eAk~vp~~H 489 (520)
T KOG4434|consen 414 WWLYIADRKSRTLLTM--PYHVCTLK--DTEEIELKFPAPGKPGNYTYTVFLRSDSYMGLDQIKPLKLDVHEAKPVPENH 489 (520)
T ss_pred eeeeeecccccceecc--hhhhhccc--ccceeEEeccCCCCCCceEEEEEEecccccChhhccceeeeeccCCCCCCCC
Confidence 44477543 1222333 99999986 444567799999999999999988765332 211 111123346788
Q ss_pred CcccccccC
Q 014568 388 NEYERFLPA 396 (422)
Q Consensus 388 dey~R~i~~ 396 (422)
++|--.|..
T Consensus 490 pqwd~~~~e 498 (520)
T KOG4434|consen 490 PQWDTAIEE 498 (520)
T ss_pred ccccccccc
Confidence 888765543
No 141
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=24.25 E-value=3.1e+02 Score=25.81 Aligned_cols=25 Identities=12% Similarity=0.323 Sum_probs=19.8
Q ss_pred ccchhHHHHHHHhCCceEEEeeCCC
Q 014568 42 KSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 42 ~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
..++...++-|++.|++|++.+++.
T Consensus 22 ~~E~~~p~~~l~~aG~~V~~as~~g 46 (221)
T cd03141 22 LEELAHPYDVFTEAGYEVDFASPKG 46 (221)
T ss_pred HHHHHHHHHHHHHCCCeEEEECCCC
Confidence 4566678899999999999986644
No 142
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=24.11 E-value=2.3e+02 Score=25.33 Aligned_cols=81 Identities=16% Similarity=0.147 Sum_probs=41.9
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCce-EEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHH------
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQ-LEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASI------ 101 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~-v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L------ 101 (422)
+..++.+|-.. .....-...++..+.+ ++.... ++...- ...||.+|..||-... .....+.+
T Consensus 55 ~~~v~~vDi~~--~a~~~a~~n~~~n~~~~v~~~~~-----d~~~~~~~~~fD~Iv~NPP~~~~--~~~~~~~~~~~i~~ 125 (170)
T PF05175_consen 55 DAKVTAVDINP--DALELAKRNAERNGLENVEVVQS-----DLFEALPDGKFDLIVSNPPFHAG--GDDGLDLLRDFIEQ 125 (170)
T ss_dssp CEEEEEEESBH--HHHHHHHHHHHHTTCTTEEEEES-----STTTTCCTTCEEEEEE---SBTT--SHCHHHHHHHHHHH
T ss_pred CCEEEEEcCCH--HHHHHHHHHHHhcCccccccccc-----cccccccccceeEEEEccchhcc--cccchhhHHHHHHH
Confidence 33477777642 2222344556666666 665421 122222 4788999999985442 22223333
Q ss_pred -HHHHHCCCcEEEEeCCCC
Q 014568 102 -VDFVDSGHDLIVAADSNA 119 (422)
Q Consensus 102 -~~Fi~~GGNlLi~~~~~~ 119 (422)
.++++.||.+++......
T Consensus 126 a~~~Lk~~G~l~lv~~~~~ 144 (170)
T PF05175_consen 126 ARRYLKPGGRLFLVINSHL 144 (170)
T ss_dssp HHHHEEEEEEEEEEEETTS
T ss_pred HHHhccCCCEEEEEeecCC
Confidence 445567999976666544
No 143
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=24.06 E-value=4.4e+02 Score=24.93 Aligned_cols=58 Identities=21% Similarity=0.219 Sum_probs=35.0
Q ss_pred HHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC--CCCCC------CccHHHHHHHHHCCCcEE
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV--ERFGG------SIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~--~~~~~------~~e~~~L~~Fi~~GGNlL 112 (422)
....|++.|+++.....++.. | ..||.|||-.... +.+.. ....+.|.+|.++|.-++
T Consensus 17 ~~~al~~~G~~~~~i~~~~~~--l-----~~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvl 82 (227)
T TIGR01737 17 TVYALRLLGVDAEIVWYEDGS--L-----PDYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVL 82 (227)
T ss_pred HHHHHHHCCCeEEEEecCCCC--C-----CCCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEE
Confidence 357888999999876444332 2 4578887765421 11100 113456888888887555
No 144
>PRK08250 glutamine amidotransferase; Provisional
Probab=24.05 E-value=4.3e+02 Score=25.25 Aligned_cols=97 Identities=12% Similarity=0.173 Sum_probs=55.2
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCC-----CCC----ccHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF-----GGS----IDVASI 101 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~-----~~~----~e~~~L 101 (422)
|++|+....-+ .-..+-..++++|++++...+.... .+ ..+...||.+||...+.... .+- .+.+.|
T Consensus 2 ~i~vi~h~~~e--~~g~~~~~~~~~g~~~~~~~~~~g~-~~-p~~~~~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i 77 (235)
T PRK08250 2 RVHFIIHESFE--APGAYLKWAENRGYDISYSRVYAGE-AL-PENADGFDLLIVMGGPQSPRTTREECPYFDSKAEQRLI 77 (235)
T ss_pred eEEEEecCCCC--CchHHHHHHHHCCCeEEEEEccCCC-CC-CCCccccCEEEECCCCCChhhccccccccchHHHHHHH
Confidence 67888755433 2244666668899999875333221 11 11235689998876643210 011 234567
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 014568 102 VDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 102 ~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
+++++.|.-+|=.. -+..-++..+|=.+.+
T Consensus 78 ~~~~~~~~PvlGIC-----~G~Qlla~alGg~V~~ 107 (235)
T PRK08250 78 NQAIKAGKAVIGVC-----LGAQLIGEALGAKYEH 107 (235)
T ss_pred HHHHHcCCCEEEEC-----hhHHHHHHHhCceecc
Confidence 78888887766221 2455777788755544
No 145
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=23.99 E-value=2.3e+02 Score=26.02 Aligned_cols=67 Identities=10% Similarity=0.117 Sum_probs=43.3
Q ss_pred HHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC--cEEEEeCCC------CcHH
Q 014568 51 SLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLIVAADSN------ASDL 122 (422)
Q Consensus 51 ~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG--NlLi~~~~~------~~~~ 122 (422)
.|+++|++.-...- ||= +.+|..+.+.+ .-.+.+.+.-+.|| +|+|++++. ....
T Consensus 35 ~Lk~~Gik~li~Dk---------------DNT-L~~~~~~~i~~-~~~~~~~~l~~~~~~~~v~IvSNsaGs~~d~~~~~ 97 (168)
T PF09419_consen 35 HLKKKGIKALIFDK---------------DNT-LTPPYEDEIPP-EYAEWLNELKKQFGKDRVLIVSNSAGSSDDPDGER 97 (168)
T ss_pred hhhhcCceEEEEcC---------------CCC-CCCCCcCcCCH-HHHHHHHHHHHHCCCCeEEEEECCCCcccCccHHH
Confidence 38888888765422 332 44565565643 22345666666776 599998763 2456
Q ss_pred HHHHHHHcCcee
Q 014568 123 IREVATECGVDF 134 (422)
Q Consensus 123 l~~ll~elGI~~ 134 (422)
.+.+.+.+||.+
T Consensus 98 a~~~~~~lgIpv 109 (168)
T PF09419_consen 98 AEALEKALGIPV 109 (168)
T ss_pred HHHHHHhhCCcE
Confidence 889999999874
No 146
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=23.93 E-value=3.3e+02 Score=23.47 Aligned_cols=84 Identities=17% Similarity=0.257 Sum_probs=49.6
Q ss_pred CeEEEEEcCcccc-cchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFAIK-SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~~~-~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|+|+++-++... ..-....+.|++.||++.-. ..+.|.... +..|. .. + +....+.|.+|+..
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~----k~~~lt~~~a~~~y~------~~-~---~~~~~~~lv~~m~s 66 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAM----KMLQLTEELAEEFYA------EH-K---GKPFFNDLVEFMTS 66 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEE----eeecCCHHHHHHHHH------Hh-c---CCchHHHHHHHhhc
Confidence 4799999887764 33367999999999999853 112232222 12232 10 1 12245779999988
Q ss_pred CCcEEEEe-CCCCcHHHHHHH
Q 014568 108 GHDLIVAA-DSNASDLIREVA 127 (422)
Q Consensus 108 GGNlLi~~-~~~~~~~l~~ll 127 (422)
|--+.+.. +.+.-+.+|.++
T Consensus 67 gp~~~l~l~g~nav~~~r~l~ 87 (135)
T smart00562 67 GPVVAMVLEGEDAVKTWRTLM 87 (135)
T ss_pred CCeEEEEEecCCHHHHHHHHh
Confidence 87655444 333334455554
No 147
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=23.89 E-value=1.2e+02 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.153 Sum_probs=17.3
Q ss_pred chhHHHHHHHhCCceEEEeeC
Q 014568 44 SHSLYFGSLTSRGFQLEFKLA 64 (422)
Q Consensus 44 ~~S~f~~~L~~rG~~v~~~~~ 64 (422)
..++..+.|+++||+|...-.
T Consensus 30 ~~~~~~~~l~~~G~~v~~ve~ 50 (83)
T PF13670_consen 30 SIEQAVAKLEAQGYQVREVEF 50 (83)
T ss_pred CHHHHHHHHHhcCCceEEEEE
Confidence 577899999999999886543
No 148
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.74 E-value=1e+02 Score=27.32 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=24.3
Q ss_pred cCEEEEeCCCC-CCCCCCccHHHHHHHHHCCCcE
Q 014568 79 YDALVLFCPSV-ERFGGSIDVASIVDFVDSGHDL 111 (422)
Q Consensus 79 yd~LVI~~p~~-~~~~~~~e~~~L~~Fi~~GGNl 111 (422)
.|.+|++..-. ..+ ..+++..+++++++||=
T Consensus 86 aDvvVLlGGLaMP~~--gv~~d~~kel~ee~~~k 117 (154)
T COG4090 86 ADVVVLLGGLAMPKI--GVTPDDAKELLEELGNK 117 (154)
T ss_pred ccEEEEEcccccCcC--CCCHHHHHHHHHhcCCC
Confidence 58999988755 323 46999999999998875
No 149
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.73 E-value=3.9e+02 Score=21.55 Aligned_cols=82 Identities=12% Similarity=0.004 Sum_probs=55.5
Q ss_pred chhHHHHHHHhCCceEEEeeCCC--C-CccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCc
Q 014568 44 SHSLYFGSLTSRGFQLEFKLADD--P-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS 120 (422)
Q Consensus 44 ~~S~f~~~L~~rG~~v~~~~~~d--~-~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~ 120 (422)
....+.+.+++.|+++.....++ + ....+.......|.+|++-.-.. --....+++.-.+.|-=++.+.....
T Consensus 11 ~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~i~~aD~VIv~t~~vs----H~~~~~vk~~akk~~ip~~~~~~~~~ 86 (97)
T PF10087_consen 11 RERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSKIKKADLVIVFTDYVS----HNAMWKVKKAAKKYGIPIIYSRSRGV 86 (97)
T ss_pred cHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHhcCCCCEEEEEeCCcC----hHHHHHHHHHHHHcCCcEEEECCCCH
Confidence 34578899999999999872222 1 11234555577799988766444 44778899999988877777765444
Q ss_pred HHHHHHHHH
Q 014568 121 DLIREVATE 129 (422)
Q Consensus 121 ~~l~~ll~e 129 (422)
..+...+++
T Consensus 87 ~~l~~~l~~ 95 (97)
T PF10087_consen 87 SSLERALER 95 (97)
T ss_pred HHHHHHHHh
Confidence 566666554
No 150
>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ. All proteins in this family are 5'-3' single-strand DNA exonucleases. These proteins are used in some aspects of mismatch repair, recombination, and recombinational repair.
Probab=23.60 E-value=7e+02 Score=27.03 Aligned_cols=90 Identities=21% Similarity=0.384 Sum_probs=51.1
Q ss_pred CCCeEEEEEcCccc-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCC-CCCCCCCccHHHHHHHH
Q 014568 28 TDRRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPS-VERFGGSIDVASIVDFV 105 (422)
Q Consensus 28 ~~~r~LVlld~~~~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~-~~~~~~~~e~~~L~~Fi 105 (422)
.+++++|+-|-..+ -..-+-+...|+..|.++.+. + +.. .+.++ +..+.+.+..
T Consensus 53 ~~~~I~I~gh~D~DGi~S~~~L~~~L~~~g~~v~~~---------------------i-p~r~~~~yg--~~~~~i~~~~ 108 (539)
T TIGR00644 53 NNEKILIFGDYDVDGITSTAILVEFLKDLGVNVDYY---------------------I-PNRITEGYG--LSPEALREAI 108 (539)
T ss_pred cCCeEEEEEccCCCcHHHHHHHHHHHHHCCCceEEE---------------------e-CCCCcccCC--CCHHHHHHHH
Confidence 35677666654332 223334666677777665442 2 211 23232 3556666777
Q ss_pred HCCCcEEEEeCCCCcH--HHHHHHHHcCceecCCCCeEEEeccCc
Q 014568 106 DSGHDLIVAADSNASD--LIREVATECGVDFDEDPAAMVIDHINY 148 (422)
Q Consensus 106 ~~GGNlLi~~~~~~~~--~l~~ll~elGI~~~~~~~~~VvD~f~~ 148 (422)
+.|.+++|+.|.+..+ .+ ..+.+.|+ ..+++||...
T Consensus 109 ~~~~~LiI~vD~G~~~~~~~-~~~~~~g~------~vIviDHH~~ 146 (539)
T TIGR00644 109 ENGVSLIITVDNGISAHEEI-DYAKELGI------DVIVTDHHEP 146 (539)
T ss_pred hcCCCEEEEeCCCcccHHHH-HHHHhcCC------CEEEECCCCC
Confidence 7777999999876643 33 34556565 2478898643
No 151
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=23.33 E-value=5.2e+02 Score=26.44 Aligned_cols=46 Identities=7% Similarity=0.098 Sum_probs=29.0
Q ss_pred CccHHHHHHHHHCCC-cEEEEeCC-CCcHHHHHHHHHcCceecCCCCe
Q 014568 95 SIDVASIVDFVDSGH-DLIVAADS-NASDLIREVATECGVDFDEDPAA 140 (422)
Q Consensus 95 ~~e~~~L~~Fi~~GG-NlLi~~~~-~~~~~l~~ll~elGI~~~~~~~~ 140 (422)
..+-..+.++++-+- ++||.++| ..+++...-++.+||...--+|.
T Consensus 62 ~ynes~~~eI~~lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~RigG~ 109 (337)
T COG2247 62 IYNESVLDEIIELNPDLVLIIGGPIAVSPNYENALKSLGITVKRIGGA 109 (337)
T ss_pred cccHHHHHHHHhhCCceEEEECCCCcCChhHHHHHHhCCcEEEEecCc
Confidence 446667777777664 45566665 45667777777788755543343
No 152
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=23.28 E-value=1.9e+02 Score=27.44 Aligned_cols=51 Identities=10% Similarity=0.129 Sum_probs=35.6
Q ss_pred CCCCccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce---ecCCCCeEEEec
Q 014568 92 FGGSIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVD---FDEDPAAMVIDH 145 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~---~~~~~~~~VvD~ 145 (422)
++ ..+.+.|.+..++|..+.++++-.. ..+..+++++|+. +... |..+.|.
T Consensus 21 i~-~~~~~ai~~~~~~G~~~~iaTGR~~-~~~~~~~~~l~~~~~~I~~N-Ga~i~d~ 74 (272)
T PRK10530 21 IL-PESLEALARAREAGYKVIIVTGRHH-VAIHPFYQALALDTPAICCN-GTYLYDY 74 (272)
T ss_pred cC-HHHHHHHHHHHHCCCEEEEEcCCCh-HHHHHHHHhcCCCCCEEEcC-CcEEEec
Confidence 54 3478999999999888777766543 4678899999875 3334 5656653
No 153
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=23.00 E-value=3.5e+02 Score=23.50 Aligned_cols=83 Identities=22% Similarity=0.315 Sum_probs=48.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G 108 (422)
.|||+++-++..+. -....+.+++.||++.-. ..+.|.+.. +.-|. +.-+ ..-.+.|.+|+-.|
T Consensus 1 e~Tl~iIKPda~~~-~g~Il~~i~~~Gf~I~~~----k~~~lt~~~a~~~y~---------~~~~-~~~~~~Lv~~m~sg 65 (132)
T cd04418 1 ERTLAIIKPDAVHK-AEEIEDIILESGFTIVQK----RKLQLSPEQCSDFYA---------EHYG-KMFFPHLVAYMSSG 65 (132)
T ss_pred CeEEEEECcHHHhh-HHHHHHHHHHCCCEEEEe----eeecCCHHHHHHHHH---------HhCC-CccHHHHHHHHhcC
Confidence 48999998776655 578899999999999853 112233221 12221 1111 22457899999877
Q ss_pred CcEE-EEeCCCCcHHHHHHH
Q 014568 109 HDLI-VAADSNASDLIREVA 127 (422)
Q Consensus 109 GNlL-i~~~~~~~~~l~~ll 127 (422)
--+. ++.+++.-+.+|.++
T Consensus 66 p~val~l~g~~aV~~~R~l~ 85 (132)
T cd04418 66 PIVAMVLARHNAISYWKELL 85 (132)
T ss_pred CeEEEEEecCCHHHHHHHHH
Confidence 6544 333433333445544
No 154
>PF05751 FixH: FixH; InterPro: IPR008620 This family consists of several Rhizobium FixH like proteins. It has been suggested that the four proteins FixG, FixH, FixI, and FixS may participate in a membrane-bound complex coupling the FixI cation pump with a redox process catalysed by FixG [].
Probab=22.93 E-value=1.6e+02 Score=25.44 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=33.2
Q ss_pred eeccccCCCceEEEEEecCCceeeeEEEEeeeeccceeeeee
Q 014568 336 LKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQRLGYTSLSLS 377 (422)
Q Consensus 336 R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R~G~t~l~~~ 377 (422)
++.|++..+|.|.+..+.| .-|.+..+|+.++.|=.+-.++
T Consensus 103 ~~~l~~~~~g~y~~~~~~~-~~G~W~l~l~~~~~~~~~~~~~ 143 (146)
T PF05751_consen 103 TLTLTESAPGVYRAPVPLL-KKGRWYLRLDWEPGDKSWRLEQ 143 (146)
T ss_pred eEEeeECCCceEEEEcCCC-CCccEEEEEEEecCCCeEEEEE
Confidence 4556677899999999999 8999999998888876665544
No 155
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=22.78 E-value=3.1e+02 Score=28.63 Aligned_cols=91 Identities=9% Similarity=0.076 Sum_probs=53.0
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDSG 108 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~G 108 (422)
.+-+|++|. +.+ | ...+.|+++|+++... |.+.+.. ......+|.|||-+.+.+ ... ....+.+.++++.+
T Consensus 192 ~~~I~viD~-g~k--~-ni~~~L~~~G~~v~vv-p~~~~~~--~i~~~~~dgIilSgGPg~-p~~~~~~i~~i~~~~~~~ 263 (382)
T CHL00197 192 QLKIIVIDF-GVK--Y-NILRRLKSFGCSITVV-PATSPYQ--DILSYQPDGILLSNGPGD-PSAIHYGIKTVKKLLKYN 263 (382)
T ss_pred CCEEEEEEC-CcH--H-HHHHHHHHCCCeEEEE-cCCCCHH--HHhccCCCEEEEcCCCCC-hhHHHHHHHHHHHHHhCC
Confidence 467888898 333 4 3888999999999876 3343322 222346788888655444 110 11235677777554
Q ss_pred CcEE-EEeCCCCcHHHHHHHHHcCcee
Q 014568 109 HDLI-VAADSNASDLIREVATECGVDF 134 (422)
Q Consensus 109 GNlL-i~~~~~~~~~l~~ll~elGI~~ 134 (422)
--+| |- -+.+-++..+|-+.
T Consensus 264 ~PilGIC------lGhQlLa~a~Gg~v 284 (382)
T CHL00197 264 IPIFGIC------MGHQILSLALEAKT 284 (382)
T ss_pred CCEEEEc------HHHHHHHHHhCCEE
Confidence 3344 22 24556666776443
No 156
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=22.71 E-value=3.3e+02 Score=23.52 Aligned_cols=84 Identities=20% Similarity=0.252 Sum_probs=49.2
Q ss_pred CeEEEEEcCccccc-chhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFAIKS-SHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~-~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|||+++-++..+. .-....+.|++.||++.-. ..+.|.... +.-|... + + ...-+.|.+|+-.
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~----k~~~lt~~~a~~~Y~~~-------~--~-~~~~~~lv~~m~s 66 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAM----KELHLTEEQAEEFYVEH-------K--G-RPFFPDLVQFMSS 66 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEe----eeecCCHHHHHHHHHHh-------c--C-CchHHHHHHHHhc
Confidence 48999998777654 4578999999999999853 112232221 1233110 1 1 1245779999988
Q ss_pred CCcEEEE-eCCCCcHHHHHHH
Q 014568 108 GHDLIVA-ADSNASDLIREVA 127 (422)
Q Consensus 108 GGNlLi~-~~~~~~~~l~~ll 127 (422)
|--+.+. .+++.-+.+|.++
T Consensus 67 Gp~v~l~l~g~~av~~~r~l~ 87 (133)
T cd00595 67 GPVVAMILEKDNAVGEWREML 87 (133)
T ss_pred CCeEEEEEecCChHHHHHHHh
Confidence 8765533 3443333444444
No 157
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=22.60 E-value=3.1e+02 Score=23.36 Aligned_cols=34 Identities=18% Similarity=0.160 Sum_probs=25.4
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEe
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFK 62 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~ 62 (422)
.+|+||+..+......|....+.|+++-..+..+
T Consensus 9 ~~R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eR 42 (118)
T PF13778_consen 9 KNRLLVVFAPSADDPRYQQQLEELQNNRCGLDER 42 (118)
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHhhhhccccC
Confidence 5788888877666677778888888876666654
No 158
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=22.34 E-value=1.5e+02 Score=31.32 Aligned_cols=75 Identities=21% Similarity=0.116 Sum_probs=48.8
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCC-CCCccccccCccccCEEEEeCCCCCCCCCCcc-----HHHHHH
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSID-----VASIVD 103 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~-d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e-----~~~L~~ 103 (422)
-|+-|..|. ....-|..=++.|+++|.++.+..+- |+. -+.+|.|+|=......+...+. .+.|++
T Consensus 245 ~~Iava~d~-afnFy~~~~~~~L~~~g~~~~~~~~~~d~~-------l~~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~ 316 (449)
T TIGR00379 245 VRIAVAQDQ-AFNFYYQDNLDALTHNAAELVPFSPLEDTE-------LPDVDAVYIGGGFPELFAEELSQNQALRDSIKT 316 (449)
T ss_pred cEEEEEech-hhceeHHHHHHHHHHCCCEEEEECCccCCC-------CCCCCEEEeCCcHHHHHHHHHHhhhHHHHHHHH
Confidence 377788885 45566667778899999999986542 221 2366877763333221211222 478999
Q ss_pred HHHCCCcEE
Q 014568 104 FVDSGHDLI 112 (422)
Q Consensus 104 Fi~~GGNlL 112 (422)
|+++|+-++
T Consensus 317 ~~~~G~pv~ 325 (449)
T TIGR00379 317 FIHQGLPIY 325 (449)
T ss_pred HHHcCCCEE
Confidence 999998776
No 159
>PHA02692 hypothetical protein; Provisional
Probab=22.22 E-value=28 Score=27.33 Aligned_cols=39 Identities=13% Similarity=0.088 Sum_probs=25.4
Q ss_pred ecCCCCCcccccccCCcchhhHHHH-HHHHHhhheeeeec
Q 014568 382 VRPYRHNEYERFLPAAYPYYGSAFS-MMAGFFIFTIVHLY 420 (422)
Q Consensus 382 VR~~~hdey~R~i~~a~pyy~s~~~-~~~~~~~F~~~~l~ 420 (422)
||+.--|+++-..++.++|+.-++. .+++.++-.+.|||
T Consensus 27 VksVLtDk~~~~~~~~~~~~~~ii~~~~~~~~~vll~flY 66 (70)
T PHA02692 27 VRTVMTEKPACDRSKGVPWTTVFLIGLIAAAIGVLLCFHY 66 (70)
T ss_pred HHHHHcCCCcccccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4454557777678899999998887 55444444444444
No 160
>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329.
Probab=22.12 E-value=92 Score=28.55 Aligned_cols=22 Identities=18% Similarity=0.525 Sum_probs=20.1
Q ss_pred eCCceEEEEEEEEEeCCeeeec
Q 014568 298 INDDLEYSVEIYEWSGTSWEPY 319 (422)
Q Consensus 298 i~d~v~y~i~i~e~~~~~w~P~ 319 (422)
-+|-|..++.+..|+.|.|+|=
T Consensus 58 P~DrI~~~~~~~~~eRG~W~PT 79 (164)
T smart00675 58 PTDRISARVSVMHFERGTWQPT 79 (164)
T ss_pred CCCeEEEEEEEEEecCCeeeee
Confidence 3788999999999999999993
No 161
>PRK15473 cbiF cobalt-precorrin-4 C(11)-methyltransferase; Provisional
Probab=21.92 E-value=3.9e+02 Score=25.79 Aligned_cols=100 Identities=12% Similarity=0.035 Sum_probs=54.7
Q ss_pred CCeEEEEEcCcccccchh---HHHHHHHhCCceEEEeeCCCCCcc--ccccCcccc-----CEEEEeCCCCCCCCCCccH
Q 014568 29 DRRVLVLVDDFAIKSSHS---LYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY-----DALVLFCPSVERFGGSIDV 98 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S---~f~~~L~~rG~~v~~~~~~d~~l~--L~~~g~~~y-----d~LVI~~p~~~~~~~~~e~ 98 (422)
|+++.+|..+ +-..|| ...+.|.++|.+++.. |.=+++. ...-|.+.- +.+++.+-......+ +.
T Consensus 80 g~~Vv~L~sG--DP~~yg~~~~l~~~l~~~~i~veii-PGISS~~aaaA~lg~pl~~~~~~~~~~v~s~hG~~~~~--~~ 154 (257)
T PRK15473 80 GKTVVRLQTG--DVSLYGSIREQGEELTKRGIDFQVV-PGVSSFLGAAAELGVEYTVPEVSQSLIITRMEGRTPVP--AR 154 (257)
T ss_pred CCeEEEEeCc--CchhhhhHHHHHHHHHHCCCCEEEe-CChhHHHHHHHHcCCCcccccccccEEEEeecCCCCCC--ch
Confidence 4566666533 333344 4566677788887764 3322222 234555432 455544332221111 33
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 014568 99 ASIVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 99 ~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~ 133 (422)
+.|....+.++.+.++........+...|.+.|..
T Consensus 155 ~~l~~~~~~~~t~vi~~~~~~~~~i~~~L~~~g~~ 189 (257)
T PRK15473 155 EQLESFASHQTSMAIFLSVQRIHRVAERLIAGGYP 189 (257)
T ss_pred hhHHHHhcCCCeEEEECCchhHHHHHHHHHHcCCC
Confidence 56788777777777776665566777777777763
No 162
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=21.84 E-value=3e+02 Score=24.80 Aligned_cols=79 Identities=11% Similarity=-0.045 Sum_probs=46.9
Q ss_pred HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCcHHHHHH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNASDLIREV 126 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~l 126 (422)
.+.+.|+++|+++.....+.....+. ....||.+||.+...... ...+.+.+++.++++--+|=. --+...+
T Consensus 13 ~~~~~l~~~G~~~~~~~~~~~~~~~~--~~~~~dgvil~gG~~~~~-~~~~~~~i~~~~~~~~PvlGI-----C~G~Qll 84 (184)
T cd01743 13 NLVQYLRELGAEVVVVRNDEITLEEL--ELLNPDAIVISPGPGHPE-DAGISLEIIRALAGKVPILGV-----CLGHQAI 84 (184)
T ss_pred HHHHHHHHcCCceEEEeCCCCCHHHH--hhcCCCEEEECCCCCCcc-cchhHHHHHHHHhcCCCEEEE-----CHhHHHH
Confidence 47778889999999876544321111 125689988875544322 222567788888876555411 1245566
Q ss_pred HHHcCce
Q 014568 127 ATECGVD 133 (422)
Q Consensus 127 l~elGI~ 133 (422)
+..+|=+
T Consensus 85 a~~~Gg~ 91 (184)
T cd01743 85 AEAFGGK 91 (184)
T ss_pred HHHhCCE
Confidence 6666633
No 163
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=21.84 E-value=2.5e+02 Score=22.72 Aligned_cols=51 Identities=18% Similarity=0.386 Sum_probs=31.3
Q ss_pred eeeecccCCeEEEEEE----eCceEeeccccCCCceEEEEEecCCcee-eeEEEEeee
Q 014568 315 SWEPYVSDDVQVQFYM----MSPYVLKTLSTDQKGHYSAEFKVPDVYG-VFQFKVEYQ 367 (422)
Q Consensus 315 ~w~P~~~~d~QlEf~m----ldPy~R~~l~~~~~~~y~~~f~~PD~hG-vf~f~v~Y~ 367 (422)
-|.|- ++.++|-+.- ..|..|..|++...|.++....- +.+| -|+|+|+-.
T Consensus 14 vwAP~-A~~V~L~l~~~~~~~~~~~~~~m~~~~~gvw~~~v~~-~~~g~~Y~y~i~~~ 69 (100)
T cd02860 14 LWAPT-AQSVKLLLYDKDDQDKVLETVQMKRGENGVWSVTLDG-DLEGYYYLYEVKVY 69 (100)
T ss_pred EECCC-CcEEEEEEEcCCCCCCcceeEeeecCCCCEEEEEeCC-ccCCcEEEEEEEEe
Confidence 36664 4556664421 12345677776678888876542 4555 689999754
No 164
>TIGR01451 B_ant_repeat conserved repeat domain. This model represents the conserved region of about 53 amino acids shared between regions, usually repeated, of proteins from a small number of phylogenetically distant prokaryotes. Examples include a 132-residue region found repeated in three of the five longest proteins of Bacillus anthracis, a 131-residue repeat in a cell wall-anchored protein of Enterococcus faecalis, and a 120-residue repeat in Methanobacterium thermoautotrophicum. A similar region is found in some Chlamydial outer membrane proteins.
Probab=21.41 E-value=1.2e+02 Score=22.12 Aligned_cols=31 Identities=19% Similarity=0.433 Sum_probs=22.2
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQ 327 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlE 327 (422)
++....+.|.++|+|.++- .+..| +.+++++
T Consensus 4 d~~~~~~Gd~v~Yti~v~N-~g~~~----a~~v~v~ 34 (53)
T TIGR01451 4 DKTVATIGDTITYTITVTN-NGNVP----ATNVVVT 34 (53)
T ss_pred CccccCCCCEEEEEEEEEE-CCCCc----eEeEEEE
Confidence 4556789999999999985 33344 4566665
No 165
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=21.35 E-value=2.8e+02 Score=25.02 Aligned_cols=78 Identities=9% Similarity=-0.009 Sum_probs=46.0
Q ss_pred HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCcHHHHHH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNASDLIREV 126 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~l 126 (422)
++.+.|++.|.++.....+. ++. ......||.|||.+...+.-.-..+.+.+.++++++--+| .. =-+..-+
T Consensus 11 ~~~~~l~~~G~~~~~~~~~~-~~~--~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~Pvl-GI----C~G~Q~l 82 (178)
T cd01744 11 NILRELLKRGCEVTVVPYNT-DAE--EILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIF-GI----CLGHQLL 82 (178)
T ss_pred HHHHHHHHCCCeEEEEECCC-CHH--HHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEE-EE----CHHHHHH
Confidence 46888999999998764443 222 2233578998887654321101235567778887765444 11 1245566
Q ss_pred HHHcCc
Q 014568 127 ATECGV 132 (422)
Q Consensus 127 l~elGI 132 (422)
+..+|=
T Consensus 83 ~~~~Gg 88 (178)
T cd01744 83 ALALGA 88 (178)
T ss_pred HHHcCC
Confidence 667763
No 166
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=21.00 E-value=3.5e+02 Score=27.88 Aligned_cols=22 Identities=14% Similarity=0.016 Sum_probs=16.3
Q ss_pred cchhHHHHHHHhCCceEEEeeC
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLA 64 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~ 64 (422)
..|..+...++..|.++.....
T Consensus 173 P~y~~~~~~~~~~g~~~~~v~~ 194 (431)
T PRK15481 173 PCFLSSINMLRYAGFSASPVSV 194 (431)
T ss_pred CCcHHHHHHHHHcCCeEEeecc
Confidence 4677888888888888876533
No 167
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=20.72 E-value=4.3e+02 Score=23.93 Aligned_cols=77 Identities=12% Similarity=0.094 Sum_probs=44.2
Q ss_pred HHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEE-EEeCCCCcHHHHH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLI-VAADSNASDLIRE 125 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlL-i~~~~~~~~~l~~ 125 (422)
.+.+.|+..|++++....+.+.-++. +.++|.|||........ .......+...++.+.-+| |- -+..-
T Consensus 13 ~l~~~l~~~g~~~~~~~~~~~~~~~~---~~~~~glii~Gg~~~~~-~~~~~~~i~~~~~~~~PilGIC------~G~Ql 82 (188)
T TIGR00888 13 LIARRLRELGVYSELVPNTTPLEEIR---EKNPKGIILSGGPSSVY-AENAPRADEKIFELGVPVLGIC------YGMQL 82 (188)
T ss_pred HHHHHHHHcCCEEEEEeCCCCHHHHh---hcCCCEEEECCCCCCcC-cCCchHHHHHHHhCCCCEEEEC------HHHHH
Confidence 45577889999998765443211121 22356877776654422 2234567777787776666 32 24555
Q ss_pred HHHHcCce
Q 014568 126 VATECGVD 133 (422)
Q Consensus 126 ll~elGI~ 133 (422)
++..+|-.
T Consensus 83 l~~~lgg~ 90 (188)
T TIGR00888 83 MAKQLGGE 90 (188)
T ss_pred HHHhcCce
Confidence 66666533
No 168
>PRK08114 cystathionine beta-lyase; Provisional
Probab=20.63 E-value=2.4e+02 Score=29.34 Aligned_cols=89 Identities=18% Similarity=0.094 Sum_probs=51.1
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
..|+++++- +......+.-+.+.|+..|.++++..+.|.. .+.+.=.+....+.+=.|... .+.-.+.+.|.+...
T Consensus 99 ~~GD~Vv~~--~~~Yg~t~~l~~~~l~~~Gi~v~~vd~~d~~-~l~~~l~~~TrlV~~EtpsNp-~~~v~DI~~Ia~ia~ 174 (395)
T PRK08114 99 EQGDHVLMT--GTAYEPTQDFCSKILSKLGVTTTWFDPLIGA-DIAKLIQPNTKVVFLESPGSI-TMEVHDVPAIVAAVR 174 (395)
T ss_pred CCCCEEEEe--CCCcHHHHHHHHHHHHhcCcEEEEECCCCHH-HHHHhcCCCceEEEEECCCCC-CCEeecHHHHHHHHH
Confidence 457775543 3334455555556788889999987544321 121111123344444445444 434567888888887
Q ss_pred CCC-cEEEEeCCCC
Q 014568 107 SGH-DLIVAADSNA 119 (422)
Q Consensus 107 ~GG-NlLi~~~~~~ 119 (422)
+-| +++++.|.+.
T Consensus 175 ~~g~g~~lvVDnT~ 188 (395)
T PRK08114 175 SVNPDAVIMIDNTW 188 (395)
T ss_pred HhCCCCEEEEECCC
Confidence 754 6777777654
No 169
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=20.50 E-value=3.8e+02 Score=23.68 Aligned_cols=84 Identities=15% Similarity=0.211 Sum_probs=48.2
Q ss_pred CeEEEEEcCcccc-cchhHHHHHHHhCCceEEEeeCCCCCccccccC-ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFAIK-SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYG-QYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~~~-~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g-~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|||+++-+...+ ..-....+.++++||.|.-. ....|.... +..|.+ -+.+ --.+.|.+|+-.
T Consensus 2 e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~----k~~~lt~e~a~~~Y~~-----~~~k-----~ff~~Lv~~m~s 67 (140)
T PRK14541 2 ERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAM----KKTRLTKETAGEFYAV-----HRER-----PFYGELVEFMSS 67 (140)
T ss_pred ceEEEEECcchhhcCchHHHHHHHHHCCCEEEEe----eeecCCHHHHHHHHHH-----HcCC-----ccHHHHHHHHhc
Confidence 5899999877664 34478999999999999853 011222211 123311 0112 135679999987
Q ss_pred CCcEE-EEeCCCCcHHHHHHH
Q 014568 108 GHDLI-VAADSNASDLIREVA 127 (422)
Q Consensus 108 GGNlL-i~~~~~~~~~l~~ll 127 (422)
|--+. ++.+++.-+.+|.++
T Consensus 68 gp~va~~l~g~nav~~~R~l~ 88 (140)
T PRK14541 68 GPCVPMILEKENAVADFRTLI 88 (140)
T ss_pred CCeEEEEEecCcHHHHHHHHh
Confidence 76544 333433333445554
No 170
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=20.37 E-value=4e+02 Score=23.61 Aligned_cols=80 Identities=16% Similarity=0.108 Sum_probs=39.3
Q ss_pred EEEcCcccccchhHHHHHHHhC-CceEEEeeCCCCC------cccccc------CccccCEEEEeCCCCCCCCCCc-cHH
Q 014568 34 VLVDDFAIKSSHSLYFGSLTSR-GFQLEFKLADDPN------IGLQRY------GQYLYDALVLFCPSVERFGGSI-DVA 99 (422)
Q Consensus 34 Vlld~~~~~~~~S~f~~~L~~r-G~~v~~~~~~d~~------l~L~~~------g~~~yd~LVI~~p~~~~~~~~~-e~~ 99 (422)
+++|+- +.-..+.-.+-|+.. +|++.+..++... +.+... ....||.|+|..........+. -.+
T Consensus 4 ~~~~~f-~~~e~~~~~~~l~~~~~~~~~~~s~~~~~v~ss~g~~i~~~~~~~~~~~~~~D~l~I~Gg~~~~~~~~~~l~~ 82 (170)
T cd03140 4 FLTDEF-ADWEGAYLAALLNSYEGFEVRTVSPTGEPVTSIGGLRVVPDYSLDDLPPEDYDLLILPGGDSWDNPEAPDLAG 82 (170)
T ss_pred Eeccch-hhhHHHHHHHHhcccCCcEEEEEeCCCCeeEecCCeEEccccchhHCCHhHccEEEEcCCcccccCCcHHHHH
Confidence 334444 334445556666654 7888877655421 222111 1246899888766432121111 123
Q ss_pred HHHHHHHCCCcEEEEe
Q 014568 100 SIVDFVDSGHDLIVAA 115 (422)
Q Consensus 100 ~L~~Fi~~GGNlLi~~ 115 (422)
-|+++.++|+ .+.+.
T Consensus 83 ~l~~~~~~~~-~i~ai 97 (170)
T cd03140 83 LVRQALKQGK-PVAAI 97 (170)
T ss_pred HHHHHHHcCC-EEEEE
Confidence 3445555555 44444
Done!