Query 014568
Match_columns 422
No_of_seqs 165 out of 314
Neff 6.6
Searched_HMMs 29240
Date Mon Mar 25 13:54:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014568.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014568hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rht_A (gatase1)-like protein; 98.0 0.0001 3.6E-09 70.7 14.5 221 30-274 5-258 (259)
2 2gk3_A Putative cytoplasmic pr 96.9 0.013 4.3E-07 55.8 13.6 190 44-272 41-255 (256)
3 3soz_A ORF 245 protein, cytopl 95.4 0.0095 3.3E-07 56.7 4.0 90 48-137 38-148 (248)
4 1t0b_A THUA-like protein; treh 94.9 0.06 2E-06 51.1 7.8 104 28-135 6-121 (252)
5 4e5v_A Putative THUA-like prot 94.3 0.16 5.6E-06 48.9 9.5 230 29-277 4-260 (281)
6 2p9r_A Alpha-2-M, alpha-2-macr 91.6 0.67 2.3E-05 37.1 7.9 72 292-368 9-86 (102)
7 3f6r_A Flavodoxin; FMN binding 88.8 3 0.0001 34.9 10.2 103 30-137 2-122 (148)
8 3nrp_A Periplasmic protein-pro 87.7 1.1 3.8E-05 39.5 6.5 70 298-370 39-120 (160)
9 3fni_A Putative diflavin flavo 87.6 2.2 7.5E-05 36.9 8.6 107 28-137 3-120 (159)
10 2zuv_A Lacto-N-biose phosphory 86.9 0.7 2.4E-05 49.5 5.7 91 43-137 466-570 (759)
11 2o6f_A 34 kDa membrane antigen 86.7 1.4 4.8E-05 39.8 6.8 69 299-369 70-151 (189)
12 2fz5_A Flavodoxin; alpha/beta 84.7 5.9 0.0002 32.3 9.5 98 32-136 2-113 (137)
13 5nul_A Flavodoxin; electron tr 83.6 4.5 0.00015 33.4 8.3 102 32-137 1-113 (138)
14 3hly_A Flavodoxin-like domain; 82.9 3.7 0.00013 35.4 7.7 104 31-137 2-115 (161)
15 1ydg_A Trp repressor binding p 81.3 4.7 0.00016 35.9 8.1 104 30-137 7-152 (211)
16 3ff4_A Uncharacterized protein 80.9 4.8 0.00017 33.6 7.4 84 47-136 22-110 (122)
17 3tty_A Beta-GAL, beta-galactos 80.1 3.7 0.00013 44.1 8.0 80 27-117 394-488 (675)
18 2a5l_A Trp repressor binding p 79.1 8.9 0.0003 33.5 9.0 104 30-137 6-145 (200)
19 4hcj_A THIJ/PFPI domain protei 75.0 17 0.0006 31.9 9.7 86 26-111 5-104 (177)
20 2vzf_A NADH-dependent FMN redu 73.6 6 0.0002 35.0 6.3 108 31-143 4-143 (197)
21 1f4p_A Flavodoxin; electron tr 72.6 24 0.00081 29.1 9.6 102 31-137 2-121 (147)
22 2zki_A 199AA long hypothetical 71.7 14 0.00047 32.3 8.3 103 30-137 5-144 (199)
23 2vrn_A Protease I, DR1199; cys 71.0 32 0.0011 29.8 10.5 87 26-112 6-112 (190)
24 2q9u_A A-type flavoprotein; fl 70.8 11 0.00037 37.1 8.1 105 29-137 256-375 (414)
25 1ykg_A SIR-FP, sulfite reducta 70.2 9.8 0.00034 32.7 6.8 109 24-137 4-130 (167)
26 3b6i_A Flavoprotein WRBA; flav 69.2 21 0.00071 31.0 8.8 103 31-137 3-141 (198)
27 2ohh_A Type A flavoprotein FPR 68.7 11 0.00037 36.8 7.6 105 28-136 255-375 (404)
28 1t5b_A Acyl carrier protein ph 67.8 28 0.00096 30.1 9.4 106 30-136 2-170 (201)
29 3ej6_A Catalase-3; heme, hydro 66.7 25 0.00085 37.8 10.2 104 26-135 534-651 (688)
30 2ark_A Flavodoxin; FMN, struct 66.7 24 0.00082 30.7 8.7 100 30-137 5-125 (188)
31 2amj_A Modulator of drug activ 65.4 28 0.00095 31.1 9.0 74 29-106 12-94 (204)
32 1e5d_A Rubredoxin\:oxygen oxid 64.7 19 0.00064 35.1 8.3 105 29-137 252-369 (402)
33 3pjl_A 34 kDa membrane antigen 63.5 31 0.0011 31.4 8.7 70 299-370 93-175 (212)
34 2hr0_A Complement C3 beta chai 63.4 17 0.00058 38.3 8.3 70 292-367 113-189 (645)
35 2hna_A Protein MIOC, flavodoxi 62.3 58 0.002 26.8 10.0 100 31-137 3-119 (147)
36 2q62_A ARSH; alpha/beta, flavo 61.7 35 0.0012 31.6 9.2 106 28-137 33-171 (247)
37 1bvy_F Protein (cytochrome P45 61.5 36 0.0012 30.2 8.9 104 28-137 20-141 (191)
38 3lzq_A P19 protein; copper bin 61.3 36 0.0012 29.8 8.4 71 298-370 37-125 (159)
39 3ttv_A Catalase HPII; heme ori 59.9 19 0.00065 39.1 7.8 102 26-133 597-711 (753)
40 3l18_A Intracellular protease 59.3 19 0.00064 30.7 6.4 84 29-112 2-99 (168)
41 2iuf_A Catalase; oxidoreductas 58.6 34 0.0012 36.8 9.4 104 27-136 527-654 (688)
42 2ds4_A Tripartite motif protei 58.4 37 0.0013 26.9 7.7 72 295-368 23-97 (113)
43 4e08_A DJ-1 beta; flavodoxin-l 58.3 23 0.00078 30.9 7.0 98 29-132 5-118 (190)
44 1vhq_A Enhancing lycopene bios 58.0 23 0.0008 32.1 7.2 37 30-66 7-48 (232)
45 1t0i_A YLR011WP; FMN binding p 57.7 27 0.00093 30.2 7.3 103 31-137 2-150 (191)
46 3fvw_A Putative NAD(P)H-depend 57.5 68 0.0023 28.0 10.0 104 30-137 3-145 (192)
47 1oi4_A Hypothetical protein YH 55.5 40 0.0014 29.5 8.1 85 28-112 22-122 (193)
48 1czn_A Flavodoxin; FMN binding 55.0 44 0.0015 28.1 8.1 100 30-137 1-119 (169)
49 1ycg_A Nitric oxide reductase; 54.5 41 0.0014 32.5 8.8 107 29-137 251-368 (398)
50 1obo_A Flavodoxin; electron tr 54.0 49 0.0017 27.9 8.2 99 30-137 2-119 (169)
51 3ha2_A NADPH-quinone reductase 53.9 42 0.0014 29.5 7.9 107 31-145 2-144 (177)
52 3rgh_A Filamin-A; cell adhesio 53.4 26 0.00088 27.7 5.8 63 297-368 22-85 (100)
53 2fex_A Conserved hypothetical 53.3 39 0.0013 29.3 7.6 97 30-132 2-112 (188)
54 1sqs_A Conserved hypothetical 52.4 23 0.00079 32.2 6.2 103 31-137 3-151 (242)
55 3l7n_A Putative uncharacterize 51.7 68 0.0023 29.0 9.3 95 31-135 2-106 (236)
56 1rtt_A Conserved hypothetical 51.5 31 0.0011 30.0 6.7 110 30-144 7-150 (193)
57 3uk7_A Class I glutamine amido 50.7 21 0.0007 35.2 5.9 44 24-67 200-243 (396)
58 2d59_A Hypothetical protein PH 50.1 1E+02 0.0035 25.7 9.5 83 47-135 40-128 (144)
59 3uk7_A Class I glutamine amido 49.8 38 0.0013 33.3 7.7 86 27-112 10-125 (396)
60 1y81_A Conserved hypothetical 49.4 64 0.0022 26.9 8.0 85 47-137 32-122 (138)
61 2hpv_A FMN-dependent NADH-azor 48.5 45 0.0015 29.2 7.3 102 31-136 3-176 (208)
62 3f2v_A General stress protein 47.0 25 0.00084 31.4 5.3 74 30-107 2-83 (192)
63 2qip_A Protein of unknown func 46.8 13 0.00046 32.1 3.4 77 43-126 61-152 (165)
64 3lcm_A SMU.1420, putative oxid 46.5 1.2E+02 0.0042 26.4 9.9 71 31-106 2-97 (196)
65 2b39_A C3; thioester, immune d 46.1 48 0.0016 39.2 8.9 70 292-367 134-210 (1661)
66 2ab0_A YAJL; DJ-1/THIJ superfa 45.8 31 0.0011 30.6 5.8 82 30-111 3-102 (205)
67 2fzv_A Putative arsenical resi 45.5 59 0.002 30.8 8.0 109 28-137 57-196 (279)
68 1u9c_A APC35852; structural ge 44.9 94 0.0032 27.5 9.0 38 30-67 6-53 (224)
69 3r6w_A FMN-dependent NADH-azor 44.8 94 0.0032 27.3 8.9 38 31-68 3-47 (212)
70 3i4a_A N(G),N(G)-dimethylargin 43.9 72 0.0024 30.6 8.4 87 42-130 67-181 (308)
71 3m3p_A Glutamine amido transfe 43.8 86 0.0029 29.0 8.7 98 29-135 3-104 (250)
72 3ot1_A 4-methyl-5(B-hydroxyeth 42.8 44 0.0015 29.7 6.3 84 29-112 9-108 (208)
73 3n7t_A Macrophage binding prot 42.8 58 0.002 30.1 7.4 38 29-66 9-58 (247)
74 1rw7_A YDR533CP; alpha-beta sa 42.3 54 0.0018 29.9 7.0 38 30-67 4-53 (243)
75 3cu7_A Complement C5; Mg domai 42.2 36 0.0012 40.2 7.1 70 292-368 131-207 (1676)
76 3efe_A THIJ/PFPI family protei 41.3 92 0.0031 27.6 8.3 97 30-132 6-123 (212)
77 3eod_A Protein HNR; response r 41.2 45 0.0015 25.9 5.6 95 28-132 6-102 (130)
78 4hs4_A Chromate reductase; tri 41.0 1.3E+02 0.0045 26.5 9.2 110 30-144 7-151 (199)
79 1d4a_A DT-diaphorase, quinone 40.7 1.5E+02 0.0051 27.4 10.0 38 30-67 3-44 (273)
80 3k1y_A Oxidoreductase; structu 40.4 81 0.0028 27.8 7.7 108 30-140 12-156 (191)
81 1n57_A Chaperone HSP31, protei 40.0 57 0.002 30.8 7.0 39 29-67 48-100 (291)
82 3gfs_A FMN-dependent NADPH-azo 39.6 52 0.0018 28.0 6.1 62 77-144 62-137 (174)
83 3l3b_A ES1 family protein; ssg 39.2 43 0.0015 31.0 5.8 37 30-66 24-65 (242)
84 1rli_A Trp repressor binding p 38.8 93 0.0032 26.2 7.7 101 30-136 4-152 (184)
85 1ka9_H Imidazole glycerol phos 38.2 1.7E+02 0.0058 25.4 9.5 71 31-112 4-79 (200)
86 4dik_A Flavoprotein; TM0755, e 38.2 1.1E+02 0.0039 30.3 9.2 107 28-137 264-385 (410)
87 2di7_A BK158_1; beta-sandwich, 37.9 13 0.00043 31.2 1.7 30 339-368 77-106 (124)
88 2zay_A Response regulator rece 37.2 66 0.0023 25.5 6.1 94 28-132 7-105 (147)
89 2rk3_A Protein DJ-1; parkinson 37.0 56 0.0019 28.5 6.0 98 29-132 3-117 (197)
90 3hr4_A Nitric oxide synthase, 36.8 2.4E+02 0.0082 25.5 10.9 104 28-137 39-159 (219)
91 2d7n_A Filamin-C; beta-sandwic 36.6 58 0.002 25.6 5.3 46 322-368 22-68 (93)
92 2d7p_A Filamin-C; beta-sandwic 35.3 45 0.0016 27.0 4.7 61 296-368 24-87 (112)
93 3svl_A Protein YIEF; E. coli C 34.8 1.4E+02 0.0048 26.1 8.3 111 30-144 5-150 (193)
94 1iuk_A Hypothetical protein TT 34.2 1.1E+02 0.0036 25.5 7.0 84 47-136 31-122 (140)
95 2dj4_A Filamin-B; beta-sandwic 34.1 65 0.0022 25.6 5.4 42 326-368 45-89 (108)
96 3p0r_A Azoreductase; structura 33.7 1.2E+02 0.0041 26.9 7.8 103 30-136 5-179 (211)
97 3kkl_A Probable chaperone prot 33.4 1E+02 0.0035 28.3 7.4 37 30-66 4-52 (244)
98 3rpe_A MDAB, modulator of drug 33.3 31 0.0011 31.5 3.7 60 30-90 26-95 (218)
99 4fxk_A Complement C4 beta chai 33.3 1.2E+02 0.0042 31.4 8.8 70 292-368 127-202 (656)
100 3kht_A Response regulator; PSI 33.0 1.3E+02 0.0044 23.7 7.2 93 30-131 6-103 (144)
101 3hv2_A Response regulator/HD d 32.2 77 0.0026 25.5 5.8 95 29-131 14-108 (153)
102 1k68_A Phytochrome response re 31.3 1.7E+02 0.006 22.3 7.7 95 29-132 2-108 (140)
103 4gi5_A Quinone reductase; prot 31.3 59 0.002 30.8 5.4 36 28-63 21-60 (280)
104 2pln_A HP1043, response regula 31.2 63 0.0022 25.4 4.9 91 28-131 17-108 (137)
105 2pn5_A TEP1R, thioester-contai 31.1 98 0.0033 35.5 8.2 71 292-367 107-184 (1325)
106 3f5d_A Protein YDEA; unknow pr 31.0 1.3E+02 0.0045 26.6 7.5 97 30-132 4-111 (206)
107 1gpw_B Amidotransferase HISH; 29.7 1.3E+02 0.0045 26.1 7.2 66 34-112 4-81 (201)
108 2d7m_A Filamin-C; beta-sandwic 29.4 80 0.0027 25.3 5.3 61 297-368 27-90 (115)
109 3snk_A Response regulator CHEY 29.0 1.8E+02 0.0062 22.5 7.4 94 30-131 15-109 (135)
110 2e9j_A Filamin-B; beta-sandwic 29.0 38 0.0013 27.6 3.2 61 297-368 37-100 (119)
111 1o1y_A Conserved hypothetical 28.8 1.7E+02 0.0057 26.5 8.0 94 29-131 12-111 (239)
112 3tem_A Ribosyldihydronicotinam 28.8 1.3E+02 0.0045 27.1 7.2 38 29-66 1-42 (228)
113 3mm4_A Histidine kinase homolo 28.0 75 0.0026 27.6 5.3 31 29-62 61-92 (206)
114 1k66_A Phytochrome response re 27.8 1.8E+02 0.0061 22.6 7.2 96 27-131 4-114 (149)
115 2ld4_A Anamorsin; methyltransf 27.7 66 0.0023 26.9 4.7 106 26-132 10-128 (176)
116 3v0r_A Major allergen ALT A 1; 27.7 1E+02 0.0034 26.1 5.5 83 271-355 10-102 (133)
117 3hzh_A Chemotaxis response reg 27.0 1E+02 0.0036 24.9 5.7 93 31-132 38-134 (157)
118 2ee9_A Filamin-B; beta-sandwic 26.9 87 0.003 24.7 4.9 46 322-368 30-76 (95)
119 3klb_A Putative flavoprotein; 26.5 2.1E+02 0.0073 23.9 7.8 56 76-135 76-139 (162)
120 2duw_A Putative COA-binding pr 26.4 1.8E+02 0.0062 24.1 7.2 83 47-136 31-122 (145)
121 3gra_A Transcriptional regulat 26.3 1.6E+02 0.0054 25.9 7.1 85 29-114 5-106 (202)
122 3u7r_A NADPH-dependent FMN red 25.7 3.4E+02 0.011 23.7 12.0 105 30-137 3-140 (190)
123 2dia_A Filamin-B; beta-sandwic 25.5 1.6E+02 0.0054 23.4 6.4 63 297-368 25-88 (113)
124 3qe2_A CPR, P450R, NADPH--cyto 25.1 2.5E+02 0.0084 29.5 9.4 109 28-137 17-143 (618)
125 1dbw_A Transcriptional regulat 25.0 1.3E+02 0.0046 22.9 5.8 92 30-132 4-98 (126)
126 1qkk_A DCTD, C4-dicarboxylate 24.8 72 0.0025 25.7 4.3 92 29-131 3-97 (155)
127 3jte_A Response regulator rece 24.6 92 0.0031 24.5 4.8 92 31-131 5-99 (143)
128 2e0n_A Precorrin-2 C20-methylt 24.0 2.3E+02 0.0077 25.8 8.0 96 28-131 95-196 (259)
129 3gt7_A Sensor protein; structu 23.8 2.4E+02 0.0081 22.5 7.4 93 29-132 7-104 (154)
130 3grc_A Sensor protein, kinase; 23.4 91 0.0031 24.4 4.5 68 30-107 7-74 (140)
131 2klu_A T-cell surface glycopro 23.4 25 0.00086 26.3 0.9 27 394-420 3-29 (70)
132 3hrz_A Cobra venom factor; ser 23.2 81 0.0028 33.3 5.2 67 292-368 111-183 (627)
133 3u7i_A FMN-dependent NADH-azor 23.0 3.4E+02 0.012 24.2 8.8 103 30-136 5-183 (223)
134 2dmb_A Filamin-B; beta-sandwic 22.9 1.1E+02 0.0037 25.1 4.9 29 339-368 61-89 (124)
135 3s2y_A Chromate reductase; ura 28.3 18 0.00062 32.3 0.0 61 76-137 71-145 (199)
136 1zgz_A Torcad operon transcrip 22.6 84 0.0029 23.9 4.1 81 31-121 4-86 (122)
137 3lua_A Response regulator rece 22.5 2.4E+02 0.0083 21.8 7.1 92 30-131 5-103 (140)
138 1xhf_A DYE resistance, aerobic 22.0 1.4E+02 0.0047 22.6 5.3 83 31-121 5-87 (123)
139 1sy7_A Catalase 1; heme oxidat 22.0 1.4E+02 0.0048 32.2 6.8 99 28-132 533-647 (715)
140 1wl8_A GMP synthase [glutamine 21.5 2E+02 0.007 24.5 6.8 89 33-133 3-92 (189)
141 2fcr_A Flavodoxin; electron tr 20.8 2.5E+02 0.0084 23.6 7.1 59 77-137 44-123 (173)
142 2qxy_A Response regulator; reg 20.8 1.9E+02 0.0064 22.5 6.0 91 30-132 5-98 (142)
143 2yxb_A Coenzyme B12-dependent 20.6 1.1E+02 0.0037 26.2 4.7 82 48-133 38-123 (161)
144 1kwg_A Beta-galactosidase; TIM 20.3 1.2E+02 0.0042 31.8 5.9 78 26-117 394-485 (645)
145 4dad_A Putative pilus assembly 20.3 1.6E+02 0.0054 23.1 5.5 93 29-132 20-118 (146)
146 3evz_A Methyltransferase; NYSG 20.2 72 0.0025 27.9 3.5 87 48-136 95-202 (230)
147 3klj_A NAD(FAD)-dependent dehy 20.1 63 0.0022 31.5 3.4 83 50-132 70-170 (385)
148 4b7l_A Filamin-B; structural p 20.0 1.3E+02 0.0043 29.3 5.5 62 296-368 269-335 (347)
No 1
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=97.98 E-value=0.0001 Score=70.74 Aligned_cols=221 Identities=16% Similarity=0.164 Sum_probs=120.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH 109 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG 109 (422)
.|+|+| +++.....-..|.+.|++.||+|++..+.+-.. ....-..||.+|+.......++ ....+.|.+||++||
T Consensus 5 ~~vLiV-~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~--~~~~L~~yDvIIl~d~~~~~l~-~~~~~~L~~yV~~GG 80 (259)
T 3rht_A 5 TRVLYC-GDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLD--VGELLAKQDLVILSDYPAERMT-AQAIDQLVTMVKAGC 80 (259)
T ss_dssp -CEEEE-ESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBC--SSHHHHTCSEEEEESCCGGGBC-HHHHHHHHHHHHTTC
T ss_pred ceEEEE-CCCCchhHHHHHHHHHHhCCceEEEeccccccc--ChhHHhcCCEEEEcCCccccCC-HHHHHHHHHHHHhCC
Confidence 578887 665445555678889999999999975544311 1122367899999865554464 456789999999999
Q ss_pred cEEEEeCCCCcH----HHH--HHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeecccc--ccceeccCCccc--C
Q 014568 110 DLIVAADSNASD----LIR--EVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFI--KADVILGSKKIE--A 179 (422)
Q Consensus 110 NlLi~~~~~~~~----~l~--~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv~~~~i--~~~~i~~~~~~~--~ 179 (422)
.+++++++..-. ... +|.+-+.+++.+. ...+ ++-. ..+..+... .+|+|+...... -
T Consensus 81 gLi~~gG~~s~~g~~g~~~~t~L~~vLPv~~~~~-~~rv-~~~~----------g~~~~~~~~~g~~HPIt~gl~~~~~~ 148 (259)
T 3rht_A 81 GLVMLGGWESYHGLGGNWDQTLLAEVLPVDIKSA-DDRI-NFDQ----------PTLAIPAAINSVSHPILQNLPWEDRP 148 (259)
T ss_dssp EEEEECSTTSSSTTTTCGGGSGGGGTSSEECCSS-CCEE-ECSS----------CEEEEESSGGGGGSTTTTTSCTTTCC
T ss_pred eEEEecCccccccccCcccccchhhhCCcccccc-cccc-ccCC----------CccceeEEccCCCCccccCCCccccC
Confidence 999888764321 221 4666778877764 2323 2111 111111122 257776432211 1
Q ss_pred ceeeeceeEEeecCCceeEeee--EeCCceeecCCCCCCCCCCCCCCCceeEEEEEEecCCcEEEEEeccc-------cc
Q 014568 180 PVLFQGIGHSLNPANSLVLKVL--SASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLS-------MF 250 (422)
Q Consensus 180 ~vl~~g~g~~l~~~n~~~~pIL--~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRvvvvGS~d-------~f 250 (422)
|.+ .+.-.... . +-...++ +...+.|+-...+. .+ .+.......+++....+|++..+|-. |.
T Consensus 149 p~~-~~~~~~~~-~-~~~~vl~~~t~~~p~~sg~~~~~----~~-~~~~~~PlL~~~~~GkGRV~~lasD~~~~W~~~~~ 220 (259)
T 3rht_A 149 PTI-GGLNRIAA-K-AKAQTLLMARVWRPTFSLEHGKT----TW-EHADHHPLLVVGEAGTGRVAAFASDVAPHWVGGLV 220 (259)
T ss_dssp CBC-SEEECCEE-C-TTSEEEEEEEEECCEEETTTTEE----EC-CEEEEEEEEEEEEETTEEEEEESSCSSTTTSGGGG
T ss_pred Ccc-cceEEEEe-C-CCCeEEEeecccccccccccccc----cc-ccCCCceEEEEeccCCeEEEEEeCCCCcccccccc
Confidence 211 11111111 1 2123333 32334555332111 11 11122355667778999999998642 11
Q ss_pred c--Ccc------------CccchHHHHHHHhhcccccC
Q 014568 251 S--NRH------------EKSGNEQFLTEISKWVFHER 274 (422)
Q Consensus 251 S--d~~------------~~~~N~~f~~~l~~W~f~e~ 274 (422)
. ++. ....-.+|..+++.|+.+|.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~ 258 (259)
T 3rht_A 221 DWGDERVTSQAPGAGAIEVGNLYSQFFRQMLEWVAKST 258 (259)
T ss_dssp GCSSSEEEECCTTSCCEEEEHHHHHHHHHHHHHHHTC-
T ss_pred ccccccccccccccccccCCCHHHHHHHHHHHHHhhcc
Confidence 1 000 01245679999999999875
No 2
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=96.91 E-value=0.013 Score=55.79 Aligned_cols=190 Identities=12% Similarity=0.063 Sum_probs=103.3
Q ss_pred chhHHHHHHHhCCceEEEeeCCCC--CccccccCccccCEEEEeCCCCCCCCC-----------CccHHHHHHHHHCCCc
Q 014568 44 SHSLYFGSLTSRGFQLEFKLADDP--NIGLQRYGQYLYDALVLFCPSVERFGG-----------SIDVASIVDFVDSGHD 110 (422)
Q Consensus 44 ~~S~f~~~L~~rG~~v~~~~~~d~--~l~L~~~g~~~yd~LVI~~p~~~~~~~-----------~~e~~~L~~Fi~~GGN 110 (422)
....+.+.|+..|+++++..+... .+.-....-..||.||+.......++. ....+.|.+|+++||.
T Consensus 41 ~~~~l~~aL~~~~~~v~~~~~~~~~~~fp~~~~~L~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~V~~GGg 120 (256)
T 2gk3_A 41 GATWLLECLRKGGVDIDYMPAHTVQIAFPESIDELNRYDVIVISDIGSNTFLLQNETFYQLKIKPNALESIKEYVKNGGG 120 (256)
T ss_dssp SCHHHHHHHHHTTCEEEEECHHHHHHCCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHHhcCceEEEEecccchhhCCcChhHHhcCCEEEEeCCchhhcccccccccccccChHHHHHHHHHHHhCCE
Confidence 334688999999999998732200 010001123578999988765443432 3467999999999999
Q ss_pred EEEEeCCCCc-------HHHH-HHHHHcCceecCCCCeEEEeccCccccCCCCCceEEeeccccccceeccCCcccCcee
Q 014568 111 LIVAADSNAS-------DLIR-EVATECGVDFDEDPAAMVIDHINYAVSNFDGDHTLIASDDFIKADVILGSKKIEAPVL 182 (422)
Q Consensus 111 lLi~~~~~~~-------~~l~-~ll~elGI~~~~~~~~~VvD~f~~~~~~~~~~~~~iv~~~~i~~~~i~~~~~~~~~vl 182 (422)
+++++++... ...+ ++.+-+++.+.++ +..+- . .. ...... .-.+|+++.... ..|.+
T Consensus 121 ll~igG~~s~~~~~g~g~~~~t~l~~vLPv~~~~~-~~~~~-~--~~--------~~~~~~-~~~~hpi~~~l~-~~p~~ 186 (256)
T 2gk3_A 121 LLMIGGYLSFMGIEAKANYKNTVLAEVLPVIMLDG-DDRVE-K--PE--------GICAEA-VSPEHPVVNGFS-DYPVF 186 (256)
T ss_dssp EEEECSTTSSSCGGGTTCGGGSTTGGGSSEEECSS-CCEEE-E--EE--------EEEEEE-SSTTSTTTTTCC-SCCEE
T ss_pred EEEECChhhhhccccCCccccCChHhhCCeeeccC-ccccc-c--CC--------Cceeee-ecCCCchhcccc-cCCcc
Confidence 9988876432 1112 3677789988875 31120 0 00 011000 003455553211 12222
Q ss_pred eeceeEEeecCCceeEeeeEeCCceeecCCCCCCCCCCCCCCCceeEEEEEEecCCcEEEEEecccc--ccC-cc-Cccc
Q 014568 183 FQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGSLSM--FSN-RH-EKSG 258 (422)
Q Consensus 183 ~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRvvvvGS~d~--fSd-~~-~~~~ 258 (422)
..-...... +-+..+++.+ . ....+.+...++|+++.++-.. ... .+ ....
T Consensus 187 ~~~~~~~~~---~~a~vl~~~~-~---------------------~PlLa~~~~G~GRv~~l~sd~~~~W~~~~~~~~~~ 241 (256)
T 2gk3_A 187 LGYNQAVAR---DDADVVLTIN-N---------------------DPLLVFGEYQQGKTACFMSDCSPHWGTQQFMSWPF 241 (256)
T ss_dssp EEEECEEEC---TTCEEEEEET-T---------------------EEEEEEEEETTEEEEEECSCSSTTTBCHHHHTCTT
T ss_pred ccEEEeeeC---CCCEEEEEeC-C---------------------CcEEEEeccCCcEEEEEccCCccccccccccCCch
Confidence 222222221 1122344431 0 0235566678899998876211 111 11 2357
Q ss_pred hHHHHHHHhhcccc
Q 014568 259 NEQFLTEISKWVFH 272 (422)
Q Consensus 259 N~~f~~~l~~W~f~ 272 (422)
+.+|..++++|+.+
T Consensus 242 ~~~l~~~~v~wl~~ 255 (256)
T 2gk3_A 242 YTDLWVNTLQFIAR 255 (256)
T ss_dssp HHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHhc
Confidence 89999999999875
No 3
>3soz_A ORF 245 protein, cytoplasmic protein STM1381; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.60A {Salmonella enterica subsp}
Probab=95.42 E-value=0.0095 Score=56.67 Aligned_cols=90 Identities=17% Similarity=0.145 Sum_probs=63.9
Q ss_pred HHHHHHhCCceEEEeeCCCC--CccccccCccccCEEEEeCCCCCCCC-----------CCccHHHHHHHHHCCCcEEEE
Q 014568 48 YFGSLTSRGFQLEFKLADDP--NIGLQRYGQYLYDALVLFCPSVERFG-----------GSIDVASIVDFVDSGHDLIVA 114 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~--~l~L~~~g~~~yd~LVI~~p~~~~~~-----------~~~e~~~L~~Fi~~GGNlLi~ 114 (422)
+.+.|++.|++|++...++. .+-....+-..||.+|+.......+. .....+.|.+||.+||-++++
T Consensus 38 ~~~aL~~~~~~V~~i~~~~~~~~fP~~~~~L~~yDvIIl~d~~~~~~l~~~~~~~~~~~~~~~~~~l~~~V~~GGgLi~~ 117 (248)
T 3soz_A 38 LLSCLRQGNIDVDYMPAHIVQTRFPQTAEALACYDAIVISDIGSNTFLLQNRTFYNMDIIPDALQLIADYVAEGGGLLMI 117 (248)
T ss_dssp HHHHHTTTTCEEEEEETTHHHHSCCCSHHHHHTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhcCCceeEEeCchhhhhhCCCChHHHhcCCEEEEcCCCcchhccCccccccccCCHHHHHHHHHHHHhCCEEEEE
Confidence 88899999999999866542 11122233478899999988764441 134579999999999999998
Q ss_pred eCCCC------cHHHH--HHHHHcCceecCC
Q 014568 115 ADSNA------SDLIR--EVATECGVDFDED 137 (422)
Q Consensus 115 ~~~~~------~~~l~--~ll~elGI~~~~~ 137 (422)
+++.. ..... +|.+-|++++.+.
T Consensus 118 gG~~~f~g~~~~g~~~~t~l~~vLPV~~~~~ 148 (248)
T 3soz_A 118 GGYLSFTGIEAKANYKNTVLAEVLPVDMLDV 148 (248)
T ss_dssp CSTTSSSCGGGCSCGGGSTHHHHSSEECCSS
T ss_pred cCchhccccccccccccCcHHHhCCcccccc
Confidence 88753 11222 4778889999754
No 4
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=94.88 E-value=0.06 Score=51.12 Aligned_cols=104 Identities=23% Similarity=0.202 Sum_probs=64.8
Q ss_pred CCCeEEEEEcCcccc-----------cchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeC-CCCCCCCCC
Q 014568 28 TDRRVLVLVDDFAIK-----------SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFC-PSVERFGGS 95 (422)
Q Consensus 28 ~~~r~LVlld~~~~~-----------~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~-p~~~~~~~~ 95 (422)
...|+||.=+.+-++ .-+..+.+.|++.||+|++...++..-.+....-..||.||++. .....+. +
T Consensus 6 ~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t~dd~~~~~~~~~L~~~DvvV~~~~~~~~~l~-~ 84 (252)
T 1t0b_A 6 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAVLDEPEHGLTDEVLDRCDVLVWWGHIAHDEVK-D 84 (252)
T ss_dssp CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEESSSGGGGCCHHHHHTCSEEEEECSSCGGGSC-H
T ss_pred CCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEeccCccccCCHhHHhcCCEEEEecCCCCCcCC-H
Confidence 357999997655332 12335688999999999986544431111122236789999863 3334453 4
Q ss_pred ccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 014568 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 96 ~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~ 135 (422)
...+.|.+|+++||.++.+=..... ..+.+-+|..+.
T Consensus 85 ~~~~al~~~V~~GgG~vgiH~a~~~---~~y~~llGg~f~ 121 (252)
T 1t0b_A 85 EVVERVHRRVLEGMGLIVLHSGHFS---KIFKKLMGTTCN 121 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEGGGGGS---HHHHHHHCSCCC
T ss_pred HHHHHHHHHHHcCCCEEEEcccCCc---HHHHhhhCCccc
Confidence 4568999999999999866333222 334555676543
No 5
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=94.33 E-value=0.16 Score=48.86 Aligned_cols=230 Identities=13% Similarity=0.154 Sum_probs=116.0
Q ss_pred CCeEEEEEc--CcccccchhHHHHHHHhCC-ceEEEeeCCC--CCccccccCccccCEEEEeCCCCCCCCCCccHHHHHH
Q 014568 29 DRRVLVLVD--DFAIKSSHSLYFGSLTSRG-FQLEFKLADD--PNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVD 103 (422)
Q Consensus 29 ~~r~LVlld--~~~~~~~~S~f~~~L~~rG-~~v~~~~~~d--~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~ 103 (422)
.-|+||+-- .|........+.+.|++.| |+|+.....+ ++..++...-..||.||+.. ....+. +...+.|.+
T Consensus 4 ~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~~~L~~~D~vV~~~-~~~~l~-~~~~~~l~~ 81 (281)
T 4e5v_A 4 PIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFVLDFSPYQLVVLDY-NGDSWP-EETNRRFLE 81 (281)
T ss_dssp CEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCCCCCTTCSEEEECC-CSSCCC-HHHHHHHHH
T ss_pred ceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHhhhhhcCCEEEEeC-CCCcCC-HHHHHHHHH
Confidence 357888853 2333444556888899999 9999863211 11223333346789999544 344453 456689999
Q ss_pred HHHCCCcEEEEeCCC-CcHHHHHHHHHcCc--------------eecCCCCeEEEeccCccccCCCC-CceEEeeccccc
Q 014568 104 FVDSGHDLIVAADSN-ASDLIREVATECGV--------------DFDEDPAAMVIDHINYAVSNFDG-DHTLIASDDFIK 167 (422)
Q Consensus 104 Fi~~GGNlLi~~~~~-~~~~l~~ll~elGI--------------~~~~~~~~~VvD~f~~~~~~~~~-~~~~iv~~~~i~ 167 (422)
|+++||.++.+=... .-.....+.+-+|+ .+.+ |-.|-|+..-. ....+ .++..+.. .-.
T Consensus 82 yV~~Ggglv~~H~a~~~~~~w~~y~~liG~g~f~~r~~~~gp~~~~~~--g~~v~~~~~g~-~~~Hp~~~~~~v~v-~~~ 157 (281)
T 4e5v_A 82 YVQNGGGVVIYHAADNAFSKWPEFNRICALGGWEGRNENSGPYVYWKD--GKLVKDSSAGP-GGSHGRQHEYVLNG-RDK 157 (281)
T ss_dssp HHHTTCEEEEEGGGGGSCTTCHHHHHHHSCBCCTTCSGGGCCEEEEET--TEEEEECCSCC-SCBCCSCEEEEEEE-SCS
T ss_pred HHHcCCCEEEEecccccCCCCHHHHHheecccccccccccccceeecc--ccccccccccc-ccCCCCCceEEEEE-cCC
Confidence 999999999764321 11112234444452 2333 33455542100 00000 11222211 113
Q ss_pred cceeccCCcccCc-eeeeceeEEeecCCceeEeeeEeCCceeecCCCCCCCCCCCCCCCceeEEEEEEecCCcEEEEEec
Q 014568 168 ADVILGSKKIEAP-VLFQGIGHSLNPANSLVLKVLSASSSAYSANPKSKLSNPPSLTGSAISLVSVVQARNNARILITGS 246 (422)
Q Consensus 168 ~~~i~~~~~~~~~-vl~~g~g~~l~~~n~~~~pIL~a~~tsys~~~~~~~~~~~~~~G~~~~LvaalQ~~nnaRvvvvGS 246 (422)
+|||+..-...-. +.=..-..... ..+.+.+|+++...++.. ..| ....++-.+...++|+..+.=
T Consensus 158 ~HPit~Gl~~~~~~~~dE~Y~~~~~-p~~~~~VL~t~~~~~~~~-----------~~g-~~~Pv~W~~~~g~GRvFyt~l 224 (281)
T 4e5v_A 158 VHPVVKGLPLKWRHAKDELYDRMRG-PGNIRDILYTAYSDKETN-----------GSG-REEPLVFTVDYGNARIFHTML 224 (281)
T ss_dssp SSTTTTTSCSEEEEEEECCCBSCBS-CCCEEEEEEEEECCGGGT-----------CCS-SEEEEEEEECSTTCEEEEECC
T ss_pred CCchhhCCCCcccccccCCcccccC-CCCCCEEEEEEeccCcCC-----------CCC-CcceEEEEEEeCCeeEEEECC
Confidence 5777643111000 00011111111 224577777765543211 112 122455555678899888876
Q ss_pred ccc---ccCc--cCccchHHHHHHHhhcccccCceE
Q 014568 247 LSM---FSNR--HEKSGNEQFLTEISKWVFHERGHL 277 (422)
Q Consensus 247 ~d~---fSd~--~~~~~N~~f~~~l~~W~f~e~gvl 277 (422)
+.- ..+. +....=++++.+-+.|+...+.-+
T Consensus 225 GH~~~~w~~~~~~~~p~f~~ll~~gi~Waa~g~~~~ 260 (281)
T 4e5v_A 225 GHAGATTEDNIAMQCTGFQVLLLRGAEWAATGKVTQ 260 (281)
T ss_dssp CCCCSSSSSCHHHHBHHHHHHHHHHHHHHHHSCCCC
T ss_pred CCcccccCCccccCCHHHHHHHHHHHHHHhCCCCCC
Confidence 663 1111 233455678899999998765433
No 6
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=91.60 E-value=0.67 Score=37.09 Aligned_cols=72 Identities=14% Similarity=0.252 Sum_probs=53.1
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 365 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy----~R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v~ 365 (422)
+...||-.|.|.|.+=+- +..+.|... .-+.+...||- .|........|.|+..|+||+. -|.|+.++.
T Consensus 9 Dr~iYrPGetV~~~~~~~---~~~~~p~~~--~~~~v~l~dp~g~~v~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~i~~~ 83 (102)
T 2p9r_A 9 DKSIYKPGQTVKFRVVSM---DENFHPLNE--LIPLVYIQDPKGNRIAQWQSFQLEGGLKQFSFPLSSEPFQGSYKVVVQ 83 (102)
T ss_dssp SCSEECTTCEEEEEEEEE---CGGGCBCCC--EEEEEEEECTTSCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEEE
T ss_pred CCcccCCCCEEEEEEEEE---CCCCcCCCC--CceEEEEECCCCCEEEEEEeecCCCCEEEEEEECCCCCCCeeEEEEEE
Confidence 355799999999998774 456777643 22455566994 2333444678999999999997 699999998
Q ss_pred eee
Q 014568 366 YQR 368 (422)
Q Consensus 366 Y~R 368 (422)
+..
T Consensus 84 ~~~ 86 (102)
T 2p9r_A 84 KKS 86 (102)
T ss_dssp CTT
T ss_pred ECC
Confidence 853
No 7
>3f6r_A Flavodoxin; FMN binding, oxidized, electron transport, flavoprotein, FMN, transport; HET: FMN; 2.00A {Desulfovibrio desulfuricans} SCOP: c.23.5.0 PDB: 3f6s_A* 3f90_A* 3kap_A* 3kaq_A*
Probab=88.84 E-value=3 Score=34.92 Aligned_cols=103 Identities=17% Similarity=0.196 Sum_probs=64.3
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCCCccccccCcc-ccCEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQY-LYDALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 30 ~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~-~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
.|++|+|.+.. .+.-=..+.+.|+++|++++....++.+.. .-. .||.+|+..|.--.-.+. -+..+.+|++
T Consensus 2 ~ki~I~y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~----~l~~~~d~ii~g~pty~~~~G~-~p~~~~~fl~ 76 (148)
T 3f6r_A 2 SKVLIVFGSSTGNTESIAQKLEELIAAGGHEVTLLNAADASAE----NLADGYDAVLFGCSAWGMEDLE-MQDDFLSLFE 76 (148)
T ss_dssp CEEEEEEECSSSHHHHHHHHHHHHHHTTTCEEEEEETTTBCCT----TTTTTCSEEEEEECEECSSSCE-ECHHHHHHHT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEehhhCCHh----HhcccCCEEEEEecccCCCCCC-CcHHHHHHHH
Confidence 47899997752 122333467778899999988755543221 123 789999999874310022 2456777776
Q ss_pred C-------CCcEEEEeC--CC------CcHHHHHHHHHcCceecCC
Q 014568 107 S-------GHDLIVAAD--SN------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 107 ~-------GGNlLi~~~--~~------~~~~l~~ll~elGI~~~~~ 137 (422)
. |-.+.+.+. .. ....++..++++|...-..
T Consensus 77 ~l~~~~l~~k~~~vfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 122 (148)
T 3f6r_A 77 EFDRIGLAGRKVAAFASGDQEYEHFCGAVPAIEERAKELGATIIAE 122 (148)
T ss_dssp TGGGTCCTTCEEEEEEEECTTSSSTTTHHHHHHHHHHHTTCEECSC
T ss_pred HhhccCCCCCEEEEEEeCCCCHHHHHHHHHHHHHHHHHcCCEEeec
Confidence 4 444444432 11 1468899999999998865
No 8
>3nrp_A Periplasmic protein-probably involved in high-AFF transport; immunoglobulin-like fold, iron transporter, copper binding; 1.60A {Escherichia coli} PDB: 3nrq_A
Probab=87.68 E-value=1.1 Score=39.48 Aligned_cols=70 Identities=19% Similarity=0.337 Sum_probs=43.5
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 014568 298 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 298 i~d~v~y~i~i~e~~~-------~~w~P~~~~d~QlEf~mld--Py~R~~l---~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
=.|+|+-+++|....+ |.|+||- +|..|++..| .-..-++ ...+.-+|-.+.|+|.. |-|+-++.
T Consensus 39 ~~sdiHLEAdI~a~e~n~~Gf~~G~~vPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~G~-G~Y~v~~~ 115 (160)
T 3nrp_A 39 AKADVHLEADIHAVEGNKNGFGAGEWIPYL--TISYTLVNNDTGEKQEGTFMPMVASDGPHYGANIKMMGV-GNYKVTYH 115 (160)
T ss_dssp GGCSEEEEEEEEECTTCSSSCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECCCSS-EEEEEEEE
T ss_pred ccCCeEEEEEeeccccCcCcCcCCCCCCCc--eeEEEEEeCCCCeEEEeeccceecCCCCccccccCCCCC-ccEEEEEE
Confidence 4688999999998876 8999994 4777777543 2222222 11233356666777544 66665555
Q ss_pred eeecc
Q 014568 366 YQRLG 370 (422)
Q Consensus 366 Y~R~G 370 (422)
..-|+
T Consensus 116 I~pPs 120 (160)
T 3nrp_A 116 IEPPS 120 (160)
T ss_dssp EECGG
T ss_pred ECCCc
Confidence 54443
No 9
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.30A {Nostoc SP} PDB: 2klb_A
Probab=87.62 E-value=2.2 Score=36.91 Aligned_cols=107 Identities=7% Similarity=-0.007 Sum_probs=65.0
Q ss_pred CCCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCC-CccccccCccccCEEEEeCCCCCCCCCCccHHHHHHH
Q 014568 28 TDRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDF 104 (422)
Q Consensus 28 ~~~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~-~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~F 104 (422)
..++++|+|.+.. .+.-=....+.|++.|.+++.....+. +.+-....-..||.|||-+|.-. +....+.+.+.
T Consensus 3 ~~~kv~IvY~S~~GnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~---g~~p~~~~l~~ 79 (159)
T 3fni_A 3 AETSIGVFYVSEYGYSDRLAQAIINGITKTGVGVDVVDLGAAVDLQELRELVGRCTGLVIGMSPAA---SAASIQGALST 79 (159)
T ss_dssp CCCEEEEEECTTSTTHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHTEEEEEEECCBTT---SHHHHHHHHHH
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHCCCeEEEEECcCcCCHHHHHHHHHhCCEEEEEcCcCC---CCccHHHHHHH
Confidence 3568999998752 233333577889999999887654443 22211122345899999888653 23332334433
Q ss_pred HH----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 014568 105 VD----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (422)
Q Consensus 105 i~----~GGNlLi~~~~----~~~~~l~~ll~elGI~~~~~ 137 (422)
+. +|..+.+.++. .....++..++++|+.+...
T Consensus 80 l~~~~~~~k~va~fgs~g~~~~a~~~l~~~l~~~G~~~v~~ 120 (159)
T 3fni_A 80 ILGSVNEKQAVGIFETGGGDDEPIDPLLSKFRNLGLTTAFP 120 (159)
T ss_dssp HHHHCCTTSEEEEECCSSSCBCCHHHHHHHHHHTTCEESSS
T ss_pred HHhhcccCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 33 34444455432 23478899999999998764
No 10
>2zuv_A Lacto-N-biose phosphorylase; beta-alpha-barrel, TIM barrel, glycosyltransferase, transferase; HET: NDG; 1.85A {Bifidobacterium longum} PDB: 2zus_A* 2zuu_A* 2zut_A* 2zuw_A*
Probab=86.92 E-value=0.7 Score=49.52 Aligned_cols=91 Identities=20% Similarity=0.224 Sum_probs=63.7
Q ss_pred cchhH--HHHHHHhCCceEEEeeCCCCCccccccCc-cccCEEEEeCCCCCCCCCCc------cHHHHHHHHHCCCcEEE
Q 014568 43 SSHSL--YFGSLTSRGFQLEFKLADDPNIGLQRYGQ-YLYDALVLFCPSVERFGGSI------DVASIVDFVDSGHDLIV 113 (422)
Q Consensus 43 ~~~S~--f~~~L~~rG~~v~~~~~~d~~l~L~~~g~-~~yd~LVI~~p~~~~~~~~~------e~~~L~~Fi~~GGNlLi 113 (422)
+.||. +.++|.+.++++++...+| +...++ ..||.||-.......+++.. -.+.|++|+.+||.++-
T Consensus 466 q~ysy~GilEALsg~~~dV~FIsfdD----I~e~e~L~d~DVIIn~G~A~TalSgg~~W~~p~~~~aLR~fV~~GGgLIg 541 (759)
T 2zuv_A 466 QTYSYYGILESLSGMRVNVRFISFDD----VLAHGIDSDIDVIINGGPVDTAFTGGDVWTNPKLVETVRAWVRGGGAFVG 541 (759)
T ss_dssp TTHHHHHHHHHHHTSSSEEEEEEHHH----HHHHCCCTTCCEEEEEECTTSTTTCGGGGGCHHHHHHHHHHHHTTCEEEE
T ss_pred ccccHHHHHHHHhcCCCceEEecHHH----hccccccccCCEEEecCcchhcccCccccCCHHHHHHHHHHHHcCCcEEE
Confidence 34454 9999999999999974332 122243 78899996664443454431 24889999999999998
Q ss_pred EeCCCCc-----HHHHHHHHHcCceecCC
Q 014568 114 AADSNAS-----DLIREVATECGVDFDED 137 (422)
Q Consensus 114 ~~~~~~~-----~~l~~ll~elGI~~~~~ 137 (422)
++++..- .....|+.=||++..++
T Consensus 542 VGepSsfqg~g~gryFqLADVLGVd~e~g 570 (759)
T 2zuv_A 542 VGEPSSAPRFQTGRFFQLADVIGVDEERY 570 (759)
T ss_dssp EESTTEEEEEETTEEETTHHHHSEEECCS
T ss_pred eCCccccccccCcccccHHhhcCcccccC
Confidence 8887421 12234889999999997
No 11
>2o6f_A 34 kDa membrane antigen; IG-fold, syphilis, metal-ION binding, dimer, membrane protei protein binding; 1.63A {Treponema pallidum} PDB: 2o6d_A 2o6e_A 2o6c_A
Probab=86.73 E-value=1.4 Score=39.78 Aligned_cols=69 Identities=16% Similarity=0.244 Sum_probs=42.2
Q ss_pred CCceEEEEEEEEEe--------CCeeeecccCCeEEEEEEeCc-e--Eeec--cccCCCceEEEEEecCCceeeeEEEEe
Q 014568 299 NDDLEYSVEIYEWS--------GTSWEPYVSDDVQVQFYMMSP-Y--VLKT--LSTDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 299 ~d~v~y~i~i~e~~--------~~~w~P~~~~d~QlEf~mldP-y--~R~~--l~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
.++|+-+++|..-. .|.|+||- .|+.+.+..+. . .++. |...+.-.|-.+.||+.--|-|+-++.
T Consensus 70 ~sDiHLEADIha~~~~n~~Gf~~G~wvPyL--~V~~~i~k~g~~~v~~gtfmPM~A~DGPHYG~NvkL~G~~G~Y~vt~~ 147 (189)
T 2o6f_A 70 EADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFE 147 (189)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTSBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEEE
T ss_pred cCceEEEEEcchhhcCCccccccCCCcCce--EEEEEEEeCCCceEEEEeccccccCCCcccccccccCCCCccEEEEEE
Confidence 57899999999877 78999984 45666666551 1 1211 122333456666666544466665555
Q ss_pred eeec
Q 014568 366 YQRL 369 (422)
Q Consensus 366 Y~R~ 369 (422)
..-|
T Consensus 148 I~pP 151 (189)
T 2o6f_A 148 IAAP 151 (189)
T ss_dssp EECC
T ss_pred EcCC
Confidence 4444
No 12
>2fz5_A Flavodoxin; alpha/beta doubly-wound topology, non-covalently bound FMN, electron transport; HET: FNR; NMR {Megasphaera elsdenii} SCOP: c.23.5.1
Probab=84.69 E-value=5.9 Score=32.27 Aligned_cols=98 Identities=13% Similarity=0.087 Sum_probs=58.5
Q ss_pred EEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHH-HHHHHHHC-
Q 014568 32 VLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVA-SIVDFVDS- 107 (422)
Q Consensus 32 ~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~-~L~~Fi~~- 107 (422)
+||+|.+..- +..=..+.+.|+++|++++....++.+. .....||.+||..|.-- - ...+. .+++|+++
T Consensus 2 i~iiy~S~tGnT~~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l~~~d~vi~g~p~y~-~--~~~~~~~~~~fl~~l 74 (137)
T 2fz5_A 2 VEIVYWSGTGNTEAMANEIEAAVKAAGADVESVRFEDTNV----DDVASKDVILLGCPAMG-S--EELEDSVVEPFFTDL 74 (137)
T ss_dssp EEEEECCSSSHHHHHHHHHHHHHHHTTCCEEEEETTSCCH----HHHHTCSEEEEECCCBT-T--TBCCHHHHHHHHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHHHHhCCCeEEEEEcccCCH----HHHhcCCEEEEEccccC-C--CCCCHHHHHHHHHHh
Confidence 5777766421 2222346677888999998765444321 12357899999999653 1 22333 36666653
Q ss_pred -----CCcEEEEeC--CC---CcHHHHHHHHHcCceecC
Q 014568 108 -----GHDLIVAAD--SN---ASDLIREVATECGVDFDE 136 (422)
Q Consensus 108 -----GGNlLi~~~--~~---~~~~l~~ll~elGI~~~~ 136 (422)
|..+.+.+. .. ....++..+.++|..+.+
T Consensus 75 ~~~l~~k~~~~~~t~g~~~~~~~~~l~~~l~~~g~~~~~ 113 (137)
T 2fz5_A 75 APKLKGKKVGLFGSYGWGSGEWMDAWKQRTEDTGATVIG 113 (137)
T ss_dssp GGGCSSCEEEEEEEESSCCSHHHHHHHHHHHHTTCEEEE
T ss_pred hhhcCCCEEEEEEecCCCCchHHHHHHHHHHHCCCEEcC
Confidence 445554442 21 135777888888988773
No 13
>5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A*
Probab=83.59 E-value=4.5 Score=33.36 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=61.6
Q ss_pred EEEEEcCc-c-cccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC-CCCCccHHHHHHHHH--
Q 014568 32 VLVLVDDF-A-IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGSIDVASIVDFVD-- 106 (422)
Q Consensus 32 ~LVlld~~-~-~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~-~~~~~e~~~L~~Fi~-- 106 (422)
++|+|.+. + .+.-=....+.|+++|++++....++.+. ..-..||.+||..|.-.. ..++.+.+.+.+.+.
T Consensus 1 i~I~Y~S~tGnT~~iA~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~iiig~pty~~g~~p~~~~~~fl~~l~~~ 76 (138)
T 5nul_A 1 MKIVYWSGTGNTEKMAELIAKGIIESGKDVNTINVSDVNI----DELLNEDILILGCSAMTDEVLEESEFEPFIEEISTK 76 (138)
T ss_dssp CEEEEECSSSHHHHHHHHHHHHHHHTTCCCEEEEGGGCCH----HHHTTCSEEEEEECCBTTTBCCTTTHHHHHHHHGGG
T ss_pred CEEEEECCCchHHHHHHHHHHHHHHCCCeEEEEEhhhCCH----HHHhhCCEEEEEcCccCCCCCChHHHHHHHHHHHhh
Confidence 36777664 2 23333457778999999998764443321 123578999999887541 111114556666665
Q ss_pred -CCCcEEEEeC--CC---CcHHHHHHHHHcCceecCC
Q 014568 107 -SGHDLIVAAD--SN---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 107 -~GGNlLi~~~--~~---~~~~l~~ll~elGI~~~~~ 137 (422)
+|..+.+.+. .. ....++..++++|..+-..
T Consensus 77 l~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v~~ 113 (138)
T 5nul_A 77 ISGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVET 113 (138)
T ss_dssp CTTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSC
T ss_pred cCCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEECC
Confidence 4666665543 11 1467888999999998754
No 14
>3hly_A Flavodoxin-like domain; Q5MZP6_SYNP6, flavoprotein, DFA1, SNR135D, NESG, structural genomics, PSI-2; 2.40A {Synechococcus elongatus pcc 6301}
Probab=82.87 E-value=3.7 Score=35.40 Aligned_cols=104 Identities=13% Similarity=-0.039 Sum_probs=62.6
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH--
Q 014568 31 RVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (422)
Q Consensus 31 r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~-- 106 (422)
|++|+|.+.. .+.-=....+.|+++|.+++.....+.+.+-.......||.|||-+|.-. + ....+.+.+.+.
T Consensus 2 kv~IvY~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~Gspty~--g-~~p~~~fl~~l~~~ 78 (161)
T 3hly_A 2 SVLIGYLSDYGYSDRLSQAIGRGLVKTGVAVEMVDLRAVDPQELIEAVSSARGIVLGTPPSQ--P-SEAVATALSTIFAA 78 (161)
T ss_dssp CEEEEECTTSTTHHHHHHHHHHHHHHTTCCEEEEETTTCCHHHHHHHHHHCSEEEEECCBSS--C-CHHHHHHHHHHHHH
T ss_pred EEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhCCEEEEEcCCcC--C-chhHHHHHHHHHhh
Confidence 6788897752 23333357788899999988765544322211112246899999999763 2 222233333332
Q ss_pred --CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 014568 107 --SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (422)
Q Consensus 107 --~GGNlLi~~~~----~~~~~l~~ll~elGI~~~~~ 137 (422)
+|-.+.+.+.. .....++.+++++|..+-.+
T Consensus 79 ~l~gk~v~~fgs~g~~g~a~~~l~~~l~~~G~~~v~~ 115 (161)
T 3hly_A 79 AHNKQAIGLFDSYGGDDEPIDALLAQFRNLGLHTAFP 115 (161)
T ss_dssp CCTTSEEEEECCCCSSBCCHHHHHHHHHHTTCEESSS
T ss_pred hhCCCEEEEEEcCCCCcHHHHHHHHHHHHCCCEEecC
Confidence 34445555432 22478899999999998754
No 15
>1ydg_A Trp repressor binding protein WRBA; tetramer, structural genomics, PSI, protein structure initiative; 2.00A {Deinococcus radiodurans} SCOP: c.23.5.8 PDB: 1yrh_A*
Probab=81.27 E-value=4.7 Score=35.86 Aligned_cols=104 Identities=8% Similarity=0.048 Sum_probs=64.5
Q ss_pred CeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCC--------------------Cc-cccccCccccCEEEEeC
Q 014568 30 RRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDP--------------------NI-GLQRYGQYLYDALVLFC 86 (422)
Q Consensus 30 ~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~--------------------~l-~L~~~g~~~yd~LVI~~ 86 (422)
.|+||++-+.. .+..-..+.+.|++.|.+++.....+. +. .-....-..+|.|||..
T Consensus 7 mkilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~aD~ii~gs 86 (211)
T 1ydg_A 7 VKLAIVFYSSTGTGYAMAQEAAEAGRAAGAEVRLLKVRETAPQDVIDGQDAWKANIEAMKDVPEATPADLEWAEAIVFSS 86 (211)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEECCCCSCHHHHTTCHHHHHHHHHTTTSCBCCHHHHHHCSEEEEEE
T ss_pred CeEEEEEECCCChHHHHHHHHHHHHhcCCCEEEEEeccccccchhhhcccccccccccccchhHHHHHHHHHCCEEEEEc
Confidence 58999997762 123334577888889999988755542 11 11112236789999999
Q ss_pred CCCCCCCCCccHHHHHHHHHC-----------CCcEEEEe--CCC---C---cHHHHHHHHHcCceecCC
Q 014568 87 PSVERFGGSIDVASIVDFVDS-----------GHDLIVAA--DSN---A---SDLIREVATECGVDFDED 137 (422)
Q Consensus 87 p~~~~~~~~~e~~~L~~Fi~~-----------GGNlLi~~--~~~---~---~~~l~~ll~elGI~~~~~ 137 (422)
|.-- . . -+..++.|+|+ |..+.+++ +.. . ...++.++..+|+.+.+.
T Consensus 87 P~y~-~--~-~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~v~~ 152 (211)
T 1ydg_A 87 PTRF-G--G-ATSQMRAFIDTLGGLWSSGKLANKTFSAMTSAQNVNGGQETTLQTLYMTAMHWGAVLTPP 152 (211)
T ss_dssp EEET-T--E-ECHHHHHHHHTTHHHHHTTTTTTCEEEEEEEESSTTSSTTHHHHHHHHHHHTTTCEECCC
T ss_pred Cccc-c--C-ccHHHHHHHHHhccccccccCCCCEEEEEEeCCCCCCChHHHHHHHHHHHHHCCCEEeCC
Confidence 9653 2 2 23457778876 33443322 211 1 246788889999988875
No 16
>3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406}
Probab=80.89 E-value=4.8 Score=33.57 Aligned_cols=84 Identities=11% Similarity=0.065 Sum_probs=56.9
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcc-ccccC----ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCcH
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIG-LQRYG----QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNASD 121 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~-L~~~g----~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~~ 121 (422)
..++.|.+.||+|-...|+.+.+. +.-|. .+.-|.++|+-|... -++.+.+-.+.|=..+|+......+
T Consensus 22 ~v~~~L~~~g~~V~pVnP~~~~i~G~~~y~sl~dlp~vDlavi~~p~~~------v~~~v~e~~~~g~k~v~~~~G~~~~ 95 (122)
T 3ff4_A 22 LAAERLKSHGHEFIPVGRKKGEVLGKTIINERPVIEGVDTVTLYINPQN------QLSEYNYILSLKPKRVIFNPGTENE 95 (122)
T ss_dssp HHHHHHHHHTCCEEEESSSCSEETTEECBCSCCCCTTCCEEEECSCHHH------HGGGHHHHHHHCCSEEEECTTCCCH
T ss_pred HHHHHHHHCCCeEEEECCCCCcCCCeeccCChHHCCCCCEEEEEeCHHH------HHHHHHHHHhcCCCEEEECCCCChH
Confidence 567788899999988777654321 11110 011688888877543 3455666777786666765555578
Q ss_pred HHHHHHHHcCceecC
Q 014568 122 LIREVATECGVDFDE 136 (422)
Q Consensus 122 ~l~~ll~elGI~~~~ 136 (422)
.+...+++.||.+-+
T Consensus 96 e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 96 ELEEILSENGIEPVI 110 (122)
T ss_dssp HHHHHHHHTTCEEEE
T ss_pred HHHHHHHHcCCeEEC
Confidence 899999999999875
No 17
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A*
Probab=80.07 E-value=3.7 Score=44.12 Aligned_cols=80 Identities=16% Similarity=0.213 Sum_probs=56.7
Q ss_pred CCCCeEEEEEcCccc---------------ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC
Q 014568 27 PTDRRVLVLVDDFAI---------------KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 27 ~~~~r~LVlld~~~~---------------~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~ 91 (422)
....++-+|+|..+. .+....+.+.|.++|..+++..+++ +| ..|+.||+ |....
T Consensus 394 ~~~a~VAil~d~~s~wa~~~~~~~~~~~~y~~~~~~~y~aL~~~gi~vD~v~~~~---dL-----~~Yklvv~--P~~~~ 463 (675)
T 3tty_A 394 RSEAKVAVMYDWENRWALELSSGPSIALNYVNEVHKYYDALYKQNIQTDMISVEE---DL-----SKYKVVIA--PVMYM 463 (675)
T ss_dssp BCCCSEEEECCHHHHHHHHHCCCSBTTCCHHHHHHHHHHHHHTTTCCEEEECTTS---CC-----TTCSEEEE--TTCCB
T ss_pred CCCCCEEEEEchhhhhhhhcccCCCccccHHHHHHHHHHHHHHcCceEEEecCcC---Cc-----ccCCEEEE--eccEe
Confidence 346788888876441 0123468889999999999986653 23 35677666 55554
Q ss_pred CCCCccHHHHHHHHHCCCcEEEEeCC
Q 014568 92 FGGSIDVASIVDFVDSGHDLIVAADS 117 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~GGNlLi~~~~ 117 (422)
++ +...++|.+|+++||+|++..-+
T Consensus 464 ~~-~~~~~~L~~yV~~GG~lv~t~~s 488 (675)
T 3tty_A 464 VK-PGFAERVERFVAQGGTFVTTFFS 488 (675)
T ss_dssp CC-TTHHHHHHHHHHTTCEEEEETTC
T ss_pred cC-HHHHHHHHHHHhcCCEEEEEccC
Confidence 64 56889999999999999977543
No 18
>2a5l_A Trp repressor binding protein WRBA; APC5760, PA0949, protein structure initiative, PSI, structural genomics; 1.70A {Pseudomonas aeruginosa} SCOP: c.23.5.8 PDB: 1zwk_A 1zwl_A*
Probab=79.06 E-value=8.9 Score=33.47 Aligned_cols=104 Identities=13% Similarity=-0.008 Sum_probs=62.9
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCcc---------------ccccCccccCEEEEeCCCCCCC
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIG---------------LQRYGQYLYDALVLFCPSVERF 92 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~---------------L~~~g~~~yd~LVI~~p~~~~~ 92 (422)
.|+||++-+..- +..-..+.+.|++.|++++.....+.... ........+|.|||..|.-- .
T Consensus 6 ~kilii~~S~~g~T~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-~ 84 (200)
T 2a5l_A 6 PYILVLYYSRHGATAEMARQIARGVEQGGFEARVRTVPAVSTECEAVAPDIPAEGALYATLEDLKNCAGLALGSPTRF-G 84 (200)
T ss_dssp CEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEBCCCEEC-------------CCBCCHHHHHTCSEEEEEEECBT-T
T ss_pred ceEEEEEeCCCChHHHHHHHHHHHHhhCCCEEEEEEhhhccchhhhhccccccccCchhhHHHHHHCCEEEEEcChhc-c
Confidence 489999977521 22223477888889999987654441000 01222367899999999654 2
Q ss_pred CCCccHHHHHHHHHC-----------CCcEEEEeC-CC---C----cHHHHHHHHHcCceecCC
Q 014568 93 GGSIDVASIVDFVDS-----------GHDLIVAAD-SN---A----SDLIREVATECGVDFDED 137 (422)
Q Consensus 93 ~~~~e~~~L~~Fi~~-----------GGNlLi~~~-~~---~----~~~l~~ll~elGI~~~~~ 137 (422)
. -+..++.|+|. |..+.+++. .. . ...++.++.++|+.+.+.
T Consensus 85 --~-~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~~~~~~~~~~~l~~~l~~~g~~~~~~ 145 (200)
T 2a5l_A 85 --N-MASPLKYFLDGTSSLWLTGSLVGKPAAVFTSTASLHGGQETTQLSMLLPLLHHGMLVLGI 145 (200)
T ss_dssp --B-CCHHHHHHHHTCHHHHHHTTTTTCEEEEEEEBSCSSCCHHHHHHHHHHHHHHTTCEECCC
T ss_pred --C-ccHHHHHHHHHHHHHhhccccCCCEEEEEEecCCCCCCHHHHHHHHHHHHHHCCCEEECC
Confidence 2 34567777775 444443332 11 1 135778888899988775
No 19
>4hcj_A THIJ/PFPI domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta-alpha sandwich; HET: MSE; 1.12A {Brachyspira murdochii}
Probab=75.04 E-value=17 Score=31.91 Aligned_cols=86 Identities=10% Similarity=-0.004 Sum_probs=51.6
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCC------------ccccccCccccCEEEEeCCCC-CCC
Q 014568 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN------------IGLQRYGQYLYDALVLFCPSV-ERF 92 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~------------l~L~~~g~~~yd~LVI~~p~~-~~~ 92 (422)
..++++++|++.+.-+..++..-.+-|++.||+++..+++... ..|.+-...+||.|||-.... +.+
T Consensus 5 ~~t~~~v~il~~~gFe~~E~~~p~~~l~~ag~~V~~~s~~~~~v~~~~G~~v~~d~~l~~v~~~~yD~liiPGG~g~~~l 84 (177)
T 4hcj_A 5 GKTNNILYVMSGQNFQDEEYFESKKIFESAGYKTKVSSTFIGTAQGKLGGMTNIDLLFSEVDAVEFDAVVFVGGIGCITL 84 (177)
T ss_dssp CCCCEEEEECCSEEECHHHHHHHHHHHHHTTCEEEEEESSSEEEEETTSCEEEECEEGGGCCGGGCSEEEECCSGGGGGG
T ss_pred ccCCCEEEEECCCCccHHHHHHHHHHHHHCCCEEEEEECCCCeEeeCCCCEEecCccHHHCCHhHCCEEEECCCccHHHH
Confidence 3456677777755445566778889999999999988665421 122233447899988843211 223
Q ss_pred CCCccH-HHHHHHHHCCCcE
Q 014568 93 GGSIDV-ASIVDFVDSGHDL 111 (422)
Q Consensus 93 ~~~~e~-~~L~~Fi~~GGNl 111 (422)
..+-.. +-|++|.++|.-|
T Consensus 85 ~~~~~~~~~l~~~~~~~k~i 104 (177)
T 4hcj_A 85 WDDWRTQGLAKLFLDNQKIV 104 (177)
T ss_dssp TTCHHHHHHHHHHHHTTCEE
T ss_pred hhCHHHHHHHHHHHHhCCEE
Confidence 222222 4455666666533
No 20
>2vzf_A NADH-dependent FMN reductase; oxidoreductase; 2.50A {Edta-degrading bacterium BNC1} PDB: 2vzh_A* 2vzj_A*
Probab=73.62 E-value=6 Score=35.05 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=64.1
Q ss_pred eEEEEEcCccc----ccchhHHHHH-HHhCCceEEEeeCCCCCcc-----------c--cccCccccCEEEEeCCCCCCC
Q 014568 31 RVLVLVDDFAI----KSSHSLYFGS-LTSRGFQLEFKLADDPNIG-----------L--QRYGQYLYDALVLFCPSVERF 92 (422)
Q Consensus 31 r~LVlld~~~~----~~~~S~f~~~-L~~rG~~v~~~~~~d~~l~-----------L--~~~g~~~yd~LVI~~p~~~~~ 92 (422)
|+|+++-+... +..-..+.+. |+++|.+++.....+.++. . .......+|.|||..|.-. .
T Consensus 4 kilii~gS~r~~g~t~~la~~i~~~~l~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~i~~aD~ii~~sP~y~-~ 82 (197)
T 2vzf_A 4 SIVAISGSPSRNSTTAKLAEYALAHVLARSDSQGRHIHVIDLDPKALLRGDLSNAKLKEAVDATCNADGLIVATPIYK-A 82 (197)
T ss_dssp EEEEEECCSSTTCHHHHHHHHHHHHHHHHSSEEEEEEEGGGSCHHHHHHTCTTSHHHHHHHHHHHHCSEEEEEEECBT-T
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHHCCCeEEEEEccccCchhhcccccCcHHHHHHHHHHHHCCEEEEEeCccC-C
Confidence 67888876421 2222235566 8888999987644332210 0 0112357899999999654 2
Q ss_pred CCCccHHHHHHHHHC-------CCcEEEEeCCC-Cc------HHHHHHHHHcCceecCCCCeEEE
Q 014568 93 GGSIDVASIVDFVDS-------GHDLIVAADSN-AS------DLIREVATECGVDFDEDPAAMVI 143 (422)
Q Consensus 93 ~~~~e~~~L~~Fi~~-------GGNlLi~~~~~-~~------~~l~~ll~elGI~~~~~~~~~Vv 143 (422)
. -+..++.|+|. |..+.+++..+ .. ..++.++..+|+.+.+. +..+-
T Consensus 83 --~-~p~~lK~~ld~l~~~~~~gK~~~~~~tgg~~~~~~a~~~~l~~~l~~~g~~~v~~-~v~~~ 143 (197)
T 2vzf_A 83 --S-YTGLLKAFLDILPQFALAGKAALPLATGGSPAHVLALDYGLRPVLHSMGVRHVVQ-SFFLV 143 (197)
T ss_dssp --B-CCHHHHHHHTTSCTTTTTTCEEEEEEEESSGGGGGHHHHTHHHHHHTTTCSEECC-CEEEE
T ss_pred --C-CCHHHHHHHHhccccccCCCEEEEEEECCCcchhhHHHHHHHHHHHHcCCEeccc-eEEEe
Confidence 2 34567777764 44455443222 11 25889999999999886 54443
No 21
>1f4p_A Flavodoxin; electron transport, flavoprotein, FMN, 3D-STRCTURE, anisotropic refinement, redox protein; HET: FMN; 1.30A {Desulfovibrio vulgaris} SCOP: c.23.5.1 PDB: 1bu5_A* 1c7f_A* 1c7e_A* 1akr_A* 1fx1_A* 1akt_A* 1akq_A* 1aku_A* 1akv_A* 1azl_A* 1j8q_A* 2fx2_A* 3fx2_A* 4fx2_A* 5fx2_A* 1akw_A* 1i1o_A* 1wsw_A* 1wsb_A* 1xyv_A* ...
Probab=72.58 E-value=24 Score=29.09 Aligned_cols=102 Identities=17% Similarity=0.216 Sum_probs=58.2
Q ss_pred eEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccc-cCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 31 RVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYL-YDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~-yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
|++|++-+..- +.-=..+.+.|+++|++++....++.+. ..-.. ||.+|+..|.-- .+.+.-+..+.+|++.
T Consensus 2 ki~iiy~S~~Gnt~~~a~~i~~~l~~~g~~v~~~~~~~~~~----~~l~~~~d~ii~~~p~y~-~g~~~~p~~~~~fl~~ 76 (147)
T 1f4p_A 2 KALIVYGSTTGNTEYTAETIARELADAGYEVDSRDAASVEA----GGLFEGFDLVLLGCSTWG-DDSIELQDDFIPLFDS 76 (147)
T ss_dssp EEEEEEECSSSHHHHHHHHHHHHHHHHTCEEEEEEGGGCCS----TTTTTTCSEEEEEECEEC-SSSCEECTTTHHHHHT
T ss_pred eEEEEEECCcCHHHHHHHHHHHHHHhcCCeeEEEehhhCCH----HHhcCcCCEEEEEeCCCC-CCCcCCChhHHHHHHH
Confidence 68888876521 2222345667888899998754333221 12245 899999999762 1110012344555553
Q ss_pred -------CCcEEEEeC--C---CC---cHHHHHHHHHcCceecCC
Q 014568 108 -------GHDLIVAAD--S---NA---SDLIREVATECGVDFDED 137 (422)
Q Consensus 108 -------GGNlLi~~~--~---~~---~~~l~~ll~elGI~~~~~ 137 (422)
|-.+.+.+. . .. ...++..++++|......
T Consensus 77 l~~~~l~~k~~~v~~~g~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 121 (147)
T 1f4p_A 77 LEETGAQGRKVACFGCGDSSWEYFCGAVDAIEEKLKNLGAEIVQD 121 (147)
T ss_dssp GGGSCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEECSC
T ss_pred HHhcccCCCEEEEEeecCCChHHHHHHHHHHHHHHHHcCCeEhhc
Confidence 444544432 1 11 357888888999987664
No 22
>2zki_A 199AA long hypothetical Trp repressor binding protein; alpha/beta structure, transcription; 2.90A {Sulfolobus tokodaii}
Probab=71.71 E-value=14 Score=32.28 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=62.4
Q ss_pred CeEEEEEcCccc-ccchhHHHHHHHhCCceEEEeeCCCCCcc----------------cc-ccCccccCEEEEeCCCCCC
Q 014568 30 RRVLVLVDDFAI-KSSHSLYFGSLTSRGFQLEFKLADDPNIG----------------LQ-RYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 30 ~r~LVlld~~~~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~----------------L~-~~g~~~yd~LVI~~p~~~~ 91 (422)
.|+||++-+.+. +..-..+.+.|++.|.+++.....+. +. +. ......+|.|||..|.--
T Consensus 5 mkilii~~S~g~T~~la~~i~~~l~~~g~~v~~~~l~~~-~~~~~~~~~~~~~~d~~~~~~~~~l~~aD~ii~gsP~y~- 82 (199)
T 2zki_A 5 PNILVLFYGYGSIVELAKEIGKGAEEAGAEVKIRRVRET-LPPEFQSRIPFDKVKDIPEVTLDDMRWADGFAIGSPTRY- 82 (199)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHHHHHHSCEEEEEECCCC-SCGGGGTTCCGGGSTTSCBCCHHHHHHCSEEEEEEECBT-
T ss_pred cEEEEEEeCccHHHHHHHHHHHHHHhCCCEEEEEehhHh-CChhhhhccCCCcccccccccHHHHHhCCEEEEECCccc-
Confidence 488999977111 22233477778888999987655443 11 10 122357899999999654
Q ss_pred CCCCccHHHHHHHHHC-----------CCcEEEEe--CC---CC---cHHHHHHHHHcCceecCC
Q 014568 92 FGGSIDVASIVDFVDS-----------GHDLIVAA--DS---NA---SDLIREVATECGVDFDED 137 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~-----------GGNlLi~~--~~---~~---~~~l~~ll~elGI~~~~~ 137 (422)
. . -+..++.|+|. |..+.+++ +. +. ...++.++..+|+.+.+.
T Consensus 83 ~--~-~~~~lk~~ld~~~~~~~~~~l~gK~~~~~~t~g~~~~g~~~~~~~l~~~l~~~g~~~~~~ 144 (199)
T 2zki_A 83 G--N-MAGGLKTFLDTTAILWKDNVLYGKPVTFFTEASTVHGGHETTILTMSTYAYHFGMIIVPI 144 (199)
T ss_dssp T--B-CCHHHHHHHHTTHHHHHTTSSTTCEEEEEEEBSSTTSSSSHHHHHHTHHHHHHTCEECCC
T ss_pred c--C-ccHHHHHHHHHhhhcccccccCCCEEEEEEeCCCCCCCHHHHHHHHHHHHHHCCeEEeCC
Confidence 2 2 33456777775 33343332 22 12 246888899999988775
No 23
>2vrn_A Protease I, DR1199; cysteine sulfenic acid, DJ-1/THIJ/PFPI superfamily, protease hydrolase, stress response; 2.15A {Deinococcus radiodurans}
Probab=71.01 E-value=32 Score=29.79 Aligned_cols=87 Identities=15% Similarity=0.147 Sum_probs=54.4
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCcc-----------------ccccCccccCEEEEeCCC
Q 014568 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG-----------------LQRYGQYLYDALVLFCPS 88 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~-----------------L~~~g~~~yd~LVI~~p~ 88 (422)
+....|+++++-+.-+..+.....+-|+..||++++..++...+. +..-....||.|||-...
T Consensus 6 ~~~~~~v~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~~~~~~g~~v~~~~~~~~~~~~~~D~livpGG~ 85 (190)
T 2vrn_A 6 DLTGKKIAILAADGVEEIELTSPRAAIEAAGGTTELISLEPGEIQSMKGDIEPQEKYRVDHVVSEVQVSDYDGLLLPGGT 85 (190)
T ss_dssp CCTTCEEEEECCTTCBHHHHHHHHHHHHHTTCEEEEEESSSSEEEEEETTTEEEEEEECSEEGGGCCGGGCSEEEECCCT
T ss_pred CCCCCEEEEEeCCCCCHHHHHHHHHHHHHCCCEEEEEecCCCccccccccccCCcEEeCCCChhhCChhhCCEEEECCCc
Confidence 345678888886655666777888999999999999877654221 111112578998886653
Q ss_pred -C-CCCCC-CccHHHHHHHHHCCCcEE
Q 014568 89 -V-ERFGG-SIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 89 -~-~~~~~-~~e~~~L~~Fi~~GGNlL 112 (422)
. +.+.. ..-.+-|+++.++|.-|.
T Consensus 86 ~~~~~~~~~~~l~~~l~~~~~~gk~i~ 112 (190)
T 2vrn_A 86 VNPDKLRLEEGAMKFVRDMYDAGKPIA 112 (190)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCEE
T ss_pred hhHHHHhhCHHHHHHHHHHHHcCCEEE
Confidence 1 11211 112355667777776554
No 24
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like, oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Probab=70.78 E-value=11 Score=37.12 Aligned_cols=105 Identities=14% Similarity=0.200 Sum_probs=64.6
Q ss_pred CCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 29 DRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 29 ~~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
-.|+++++-+.. .+..-..+.+.|+++|++++.....+.++.-.......||.+||..|.-. . ... ..++.|++
T Consensus 256 ~~kv~iiy~S~~GnT~~la~~i~~~l~~~g~~v~~~~l~~~~~~~~~~~l~~~D~iiigsP~y~-~--~~~-~~~k~fld 331 (414)
T 2q9u_A 256 QKKVTVVLDSMYGTTHRMALALLDGARSTGCETVLLEMTSSDITKVALHTYDSGAVAFASPTLN-N--TMM-PSVAAALN 331 (414)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGCCHHHHHHHHHTCSEEEEECCCBT-T--BCC-HHHHHHHH
T ss_pred CCeEEEEEECCCchHHHHHHHHHHHHHhCCCeEEEEEcCcCCHHHHHHHHHhCCEEEEEcCccC-c--Cch-HHHHHHHH
Confidence 368999997652 12233347778888999998764444322111113357899999999654 2 222 23566665
Q ss_pred --------CCCcEEEEeC-C---CCcHHHHHHHHH-cCceecCC
Q 014568 107 --------SGHDLIVAAD-S---NASDLIREVATE-CGVDFDED 137 (422)
Q Consensus 107 --------~GGNlLi~~~-~---~~~~~l~~ll~e-lGI~~~~~ 137 (422)
+|..+.+++. . ...+.++.++.+ +|..+...
T Consensus 332 ~l~~~~~~~~K~~~~~~t~g~~~~a~~~l~~~l~~~~g~~~~~~ 375 (414)
T 2q9u_A 332 YVRGLTLIKGKPAFAFGAFGWSNRAVPDIVAELRDGCKADVYDE 375 (414)
T ss_dssp HHHHHTTTTTSBEEEEEEESSSCCHHHHHHHHHHHTSCCBCCCS
T ss_pred HHHhhcccCCCEEEEEEecCCCchhHHHHHHHHHhhcCcEEccC
Confidence 3555554442 1 124678899999 99888765
No 25
>1ykg_A SIR-FP, sulfite reductase [NADPH] flavoprotein alpha- component; electron transport; HET: FMN; NMR {Escherichia coli} SCOP: c.23.5.2
Probab=70.23 E-value=9.8 Score=32.73 Aligned_cols=109 Identities=10% Similarity=0.038 Sum_probs=59.7
Q ss_pred cCCCCCCeEEEEEcCcc-c-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC-CCCCCCccHHH
Q 014568 24 PENPTDRRVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVAS 100 (422)
Q Consensus 24 ~~~~~~~r~LVlld~~~-~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~ 100 (422)
+.+....+++|+|.+.. . +.-=....+.|.++|++++....++.+. ..-..||.+||..|.. ..-. ....+.
T Consensus 4 ~~~~~~~ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~~~~----~~l~~~d~ii~g~pt~g~G~~-p~~~~~ 78 (167)
T 1ykg_A 4 APAAEMPGITIISASQTGNARRVAEALRDDLLAAKLNVKLVNAGDYKF----KQIASEKLLIVVTSTQGEGEP-PEEAVA 78 (167)
T ss_dssp --------CEEEEECSSSHHHHHHHHHHHHHHHHTCCCEEEEGGGCCG----GGGGGCSEEEEEEECBGGGBC-CGGGHH
T ss_pred CCCCCCCeEEEEEECCchHHHHHHHHHHHHHHHCCCceEEeehhhCCH----HHhccCCeEEEEEcccCCCcC-ChhHHH
Confidence 33444568999997752 2 2222345666888899887654433221 1224679999999977 3211 224566
Q ss_pred HHHHHHC-------CCcEEEEe-CCC-------CcHHHHHHHHHcCceecCC
Q 014568 101 IVDFVDS-------GHDLIVAA-DSN-------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 101 L~~Fi~~-------GGNlLi~~-~~~-------~~~~l~~ll~elGI~~~~~ 137 (422)
+.+.+.. |-.+.+.+ +.. ....+...++++|......
T Consensus 79 f~~~l~~~~~~~l~~k~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~v~~ 130 (167)
T 1ykg_A 79 LHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLD 130 (167)
T ss_dssp HHHHHTSTTCCCCTTCEEEEEEECCTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHHHHHhccccccCCCEEEEEeecCCCHHHHHHHHHHHHHHHHHCCCeEeec
Confidence 6666653 33344443 211 1367888899999987654
No 26
>3b6i_A Flavoprotein WRBA; flavoproteins, NADH:quinone oxidoreductase, FMN; HET: FMN 15P; 1.66A {Escherichia coli} PDB: 2r96_A* 2r97_A 2rg1_A* 3b6j_A* 3b6k_A* 3b6m_A*
Probab=69.22 E-value=21 Score=30.96 Aligned_cols=103 Identities=17% Similarity=0.127 Sum_probs=60.8
Q ss_pred eEEEEEcCcc--cccchhHHHHHHHh-CCceEEEeeCCCCCc---------------cccccCccccCEEEEeCCCCCCC
Q 014568 31 RVLVLVDDFA--IKSSHSLYFGSLTS-RGFQLEFKLADDPNI---------------GLQRYGQYLYDALVLFCPSVERF 92 (422)
Q Consensus 31 r~LVlld~~~--~~~~~S~f~~~L~~-rG~~v~~~~~~d~~l---------------~L~~~g~~~yd~LVI~~p~~~~~ 92 (422)
|+||++-+.. .+..-..+.+.|++ +|.+++.....+... ......-..+|.||+..|.--
T Consensus 3 kilii~~S~~g~t~~la~~i~~~l~~~~g~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~gsP~y~-- 80 (198)
T 3b6i_A 3 KVLVLYYSMYGHIETMARAVAEGASKVDGAEVVVKRVPETMPPQLFEKAGGKTQTAPVATPQELADYDAIIFGTPTRF-- 80 (198)
T ss_dssp EEEEEECCSSSHHHHHHHHHHHHHHTSTTCEEEEEECCCCSCHHHHHHTTCCCCCSCBCCGGGGGGCSEEEEEEEEET--
T ss_pred eEEEEEeCCCcHHHHHHHHHHHHHhhcCCCEEEEEEccccCchhhhhhcccccccCchhhHHHHHHCCEEEEEeChhc--
Confidence 7889987741 12233357778888 899998765544200 011233467899999999653
Q ss_pred CCCccHHHHHHHHHC-----------CCcEEEEe--CC-CC-c---HHHHHHHHHcCceecCC
Q 014568 93 GGSIDVASIVDFVDS-----------GHDLIVAA--DS-NA-S---DLIREVATECGVDFDED 137 (422)
Q Consensus 93 ~~~~e~~~L~~Fi~~-----------GGNlLi~~--~~-~~-~---~~l~~ll~elGI~~~~~ 137 (422)
+ . -+..++.|+|. |..+.+++ +. +. . ..++..+.++|+.+.+.
T Consensus 81 ~-~-~~~~lk~~ld~~~~~~~~~~l~~K~~~~~~t~g~~g~~~~~l~~l~~~l~~~g~~~v~~ 141 (198)
T 3b6i_A 81 G-N-MSGQMRTFLDQTGGLWASGALYGKLASVFSSTGTGGGQEQTITSTWTTLAHHGMVIVPI 141 (198)
T ss_dssp T-E-ECHHHHHHHTTCHHHHHHTTTTTCEEEEEEEESSSTTHHHHHHHHHHHHHHTTCEECCC
T ss_pred C-C-chHHHHHHHHHhhhhhhhcccCCCEEEEEEeCCCCccHHHHHHHHHHHHHHCCcEEECC
Confidence 2 2 24456677764 33444333 22 11 1 34556777789888775
No 27
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine like domain, oxidore; HET: FMN; 1.70A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2ohi_A* 2ohj_A*
Probab=68.71 E-value=11 Score=36.80 Aligned_cols=105 Identities=17% Similarity=0.177 Sum_probs=63.7
Q ss_pred CCCeEEEEEcCcc--cccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 28 TDRRVLVLVDDFA--IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 28 ~~~r~LVlld~~~--~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
...++++++-+.. .+..-....+.|++.|.+++.....+....-.......||.+||..|.-. +... ..++.|+
T Consensus 255 ~~~k~~i~~~S~~gnT~~la~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~l~~~d~iiigsP~y~---~~~~-~~~k~~l 330 (404)
T 2ohh_A 255 VDERVTVIYDTMHGSTRKMAHAIAEGAMSEGVDVRVYCLHEDDRSEIVKDILESGAIALGAPTIY---DEPY-PSVGDLL 330 (404)
T ss_dssp CCSEEEEEECCSSSHHHHHHHHHHHHHHTTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCEET---TEEC-THHHHHH
T ss_pred CCCcEEEEEECCChHHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECcccc---ccch-HHHHHHH
Confidence 3578899987642 12333456777888999998875555433211223467899999999654 1222 2355555
Q ss_pred H----------CCCcEEEEeC-C---CCcHHHHHHHHHcCceecC
Q 014568 106 D----------SGHDLIVAAD-S---NASDLIREVATECGVDFDE 136 (422)
Q Consensus 106 ~----------~GGNlLi~~~-~---~~~~~l~~ll~elGI~~~~ 136 (422)
+ +|..+.+++. . ...+.++.++.++|..+..
T Consensus 331 d~l~~~~~~~l~~k~~~~~~~~g~~~~a~~~l~~~l~~~g~~~~~ 375 (404)
T 2ohh_A 331 MYLRGLKFNRTLTRKALVFGSMGGNGGATGTMKELLAEAGFDVAC 375 (404)
T ss_dssp HHHHHHCGGGTCCEEEEEEEEESSSCCHHHHHHHHHHHTTEEEEE
T ss_pred HHhhhccccccCCCEEEEEEecCCCChhHHHHHHHHHHCCCEEEe
Confidence 4 2334443332 1 2246789999999988765
No 28
>1t5b_A Acyl carrier protein phosphodiesterase; structural genomics, FMN, alpha/beta/alpha sandwich, PSI, protein structure initiative; HET: FMN; 1.40A {Salmonella typhimurium} SCOP: c.23.5.3 PDB: 1tik_A 2z98_A* 2d5i_A* 1v4b_A* 2z9b_A* 2z9c_A* 2z9d_A*
Probab=67.83 E-value=28 Score=30.08 Aligned_cols=106 Identities=11% Similarity=0.157 Sum_probs=60.7
Q ss_pred CeEEEEEcCccc-----ccchhHHHHHHHhCC--ceEEEeeCCCCCcccc-----------------------------c
Q 014568 30 RRVLVLVDDFAI-----KSSHSLYFGSLTSRG--FQLEFKLADDPNIGLQ-----------------------------R 73 (422)
Q Consensus 30 ~r~LVlld~~~~-----~~~~S~f~~~L~~rG--~~v~~~~~~d~~l~L~-----------------------------~ 73 (422)
.|+|+++-+... +..-..+.+.|+++| .+++.....+..+... .
T Consensus 2 mkilii~~S~~~~~s~t~~la~~~~~~l~~~g~~~~v~~~dl~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 81 (201)
T 1t5b_A 2 SKVLVLKSSILAGYSQSGQLTDYFIEQWREKHVADEITVRDLAANPVPVLDGELVGAMRPGDAPLTPRQQDALALSDELI 81 (201)
T ss_dssp CEEEEEECCSSGGGCHHHHHHHHHHHHHHHHCTTCEEEEEETTTSCCCCCCHHHHHHTC--CCCCCHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCCChHHHHHHHHHHHHHHhCCCCeEEEEeccCCCCCCCCHHHHHhhcCCcccCCHHHHHHHHHHHHHH
Confidence 378888876542 122225777888876 8998876655433211 0
Q ss_pred cCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-----------------CCCcEEEEe-CCC---------CcHHHHHH
Q 014568 74 YGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-----------------SGHDLIVAA-DSN---------ASDLIREV 126 (422)
Q Consensus 74 ~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~-----------------~GGNlLi~~-~~~---------~~~~l~~l 126 (422)
..-..+|.|||..|--- .+-.-..+...|.+. +|..+.+++ ..+ ....++.+
T Consensus 82 ~~l~~aD~iv~~~P~y~-~~~p~~lK~~iD~~~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~~l~~~ 160 (201)
T 1t5b_A 82 AELKAHDVIVIAAPMYN-FNIPTQLKNYFDLIARAGITFRYTEKGPEGLVTGKRAVVLSSRGGIHKDTPTDLIAPYLKVF 160 (201)
T ss_dssp HHHHHCSEEEEECCCBT-TBCCHHHHHHHHHHCCBTTTEEEETTEEEESSCSCEEEEEEECSSCCTTSTTCCHHHHHHHH
T ss_pred HHHHhCCEEEEEeCccc-CcCCHHHHHHHHHheeCCCceecCCCCCccCCCCCeEEEEEecCCCCCCCchhhHHHHHHHH
Confidence 11257899999999654 321112344444443 234455433 211 12358889
Q ss_pred HHHcCceecC
Q 014568 127 ATECGVDFDE 136 (422)
Q Consensus 127 l~elGI~~~~ 136 (422)
+..+|+...+
T Consensus 161 l~~~G~~~~~ 170 (201)
T 1t5b_A 161 LGFIGITDVN 170 (201)
T ss_dssp HHHTTCCCEE
T ss_pred HhhcCcceeE
Confidence 9999998765
No 29
>3ej6_A Catalase-3; heme, hydrogen iron, metal-binding, oxidoreductase, peroxidase; HET: NAG HEM; 2.30A {Neurospora crassa}
Probab=66.71 E-value=25 Score=37.84 Aligned_cols=104 Identities=13% Similarity=0.041 Sum_probs=68.5
Q ss_pred CCCCCeEEEEEcCc-ccccchhHHHHHHHhCCceEEEeeCCCC---CccccccCccccCEEEEeCCCC---------CCC
Q 014568 26 NPTDRRVLVLVDDF-AIKSSHSLYFGSLTSRGFQLEFKLADDP---NIGLQRYGQYLYDALVLFCPSV---------ERF 92 (422)
Q Consensus 26 ~~~~~r~LVlld~~-~~~~~~S~f~~~L~~rG~~v~~~~~~d~---~l~L~~~g~~~yd~LVI~~p~~---------~~~ 92 (422)
+..+.|+.||+.+- .+........+.|++.|.++....++.. +..+..-...+||.|||-.... +.+
T Consensus 534 ~l~grKVaILvadG~fE~~El~~p~~aL~~aGa~V~vVsp~~g~GvD~t~~~~~s~~fDAVvlPGG~~~~~~~~~~~d~L 613 (688)
T 3ej6_A 534 TIATLRVGVLSTTKGGSLDKAKALKEQLEKDGLKVTVIAEYLASGVDQTYSAADATAFDAVVVAEGAERVFSGKGAMSPL 613 (688)
T ss_dssp CCTTCEEEEECCSSSSHHHHHHHHHHHHHHTTCEEEEEESSCCTTCCEETTTCCGGGCSEEEECTTCCTTTSTTTTCCTT
T ss_pred CccCCEEEEEccCCCccHHHHHHHHHHHHHCCCEEEEEeCCCCCCcccCcccCChhcCcEEEECCCcccccccccchhhh
Confidence 34578999999765 4566778899999999999999877542 2234444557899999955432 223
Q ss_pred CCCcc-HHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 014568 93 GGSID-VASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 93 ~~~~e-~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~ 135 (422)
-.+-. .+-+.+|.+.|.=|-.+. .+ ..+|.+.||...
T Consensus 614 r~~~~a~~fV~e~~~hgKpIAAIc-hg-----p~lL~~AGI~~~ 651 (688)
T 3ej6_A 614 FPAGRPSQILTDGYRWGKPVAAVG-SA-----KKALQSIGVEEK 651 (688)
T ss_dssp SCTTHHHHHHHHHHHTTCCEEEEG-GG-----HHHHHHTTCCSS
T ss_pred ccCHHHHHHHHHHHHcCCEEEEeC-cc-----HHHHHHcCCCCC
Confidence 22222 355677777776555433 21 267888999754
No 30
>2ark_A Flavodoxin; FMN, structural genomics, PSI, structure initiative, midwest center for structural genomic electron transport; 2.40A {Aquifex aeolicus} SCOP: c.23.5.8
Probab=66.67 E-value=24 Score=30.67 Aligned_cols=100 Identities=18% Similarity=0.107 Sum_probs=58.4
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHh-CCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~-rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
.|+||++-+..- +..-..+.+.|++ .|.+++.....+.+ ...-..||.+|+..|.-. . . -+..+++|++
T Consensus 5 ~kiliiy~S~~GnT~~~a~~i~~~l~~~~g~~v~~~~l~~~~----~~~l~~aD~ii~gsP~y~-g--~-~~~~lk~fld 76 (188)
T 2ark_A 5 GKVLVIYDTRTGNTKKMAELVAEGARSLEGTEVRLKHVDEAT----KEDVLWADGLAVGSPTNM-G--L-VSWKMKRFFD 76 (188)
T ss_dssp EEEEEEECCSSSHHHHHHHHHHHHHHTSTTEEEEEEETTTCC----HHHHHHCSEEEEEEECBT-T--B-CCHHHHHHHH
T ss_pred CEEEEEEECCCcHHHHHHHHHHHHHhhcCCCeEEEEEhhhCC----HHHHHhCCEEEEEeCccC-C--c-CCHHHHHHHH
Confidence 478999977421 2222346777888 89999887554432 122356799999999763 2 2 2345666666
Q ss_pred ----------CCCcEEEEeC-C--C--CcH---HHHHHHHHcCceecCC
Q 014568 107 ----------SGHDLIVAAD-S--N--ASD---LIREVATECGVDFDED 137 (422)
Q Consensus 107 ----------~GGNlLi~~~-~--~--~~~---~l~~ll~elGI~~~~~ 137 (422)
+|..+.+.+. . . ... .+...+.++|+.+...
T Consensus 77 ~~~~~~~~~l~gk~~~~~~t~g~~~g~~~~~l~~l~~~l~~~g~~~~~~ 125 (188)
T 2ark_A 77 DVLGDLWGEIDGKIACAFSSSGGWGGGNEVACMSILTMLMNFGFLVFGV 125 (188)
T ss_dssp HTGGGTTTSCTTCEEEEEEEESSBTSSHHHHHHHHHHHHHHTTCEECCE
T ss_pred HHhhhhHHHhCCCeEEEEEECCCCCCCHHHHHHHHHHHHHHCCcEEeCC
Confidence 3444554332 1 1 112 3444455688887753
No 31
>2amj_A Modulator of drug activity B; oxidoreductase, menadione, DT-diaphorase, montreal-kingston structural genomics initiative, BSGI; 1.80A {Escherichia coli} PDB: 2b3d_A*
Probab=65.38 E-value=28 Score=31.05 Aligned_cols=74 Identities=14% Similarity=0.222 Sum_probs=45.8
Q ss_pred CCeEEEEEcCccc---c-----cchhHHHHHHHhCCceEEEeeCCCC-CccccccCccccCEEEEeCCCCCCCCCCccHH
Q 014568 29 DRRVLVLVDDFAI---K-----SSHSLYFGSLTSRGFQLEFKLADDP-NIGLQRYGQYLYDALVLFCPSVERFGGSIDVA 99 (422)
Q Consensus 29 ~~r~LVlld~~~~---~-----~~~S~f~~~L~~rG~~v~~~~~~d~-~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~ 99 (422)
..|+||+.-.+.. + ..-..+.+.|+++|++++.....+. ++.-....-..+|.|||..|--- ++ -+.
T Consensus 12 ~~~iLii~gsP~~~~s~~s~~~~l~~~~~~~~~~~g~~v~~~dL~~~~d~~~~~~~l~~AD~iV~~~P~y~-~s---~pa 87 (204)
T 2amj_A 12 SSNILIINGAKKFAHSNGQLNDTLTEVADGTLRDLGHDVRIVRADSDYDVKAEVQNFLWADVVIWQMPGWW-MG---APW 87 (204)
T ss_dssp CCEEEEEECCC------CHHHHHHHHHHHHHHHHTTCEEEEEESSSCCCHHHHHHHHHHCSEEEEEEECBT-TB---CCH
T ss_pred CcCEEEEEcCCCcccCcCcHHHHHHHHHHHHHHHcCCEEEEEeCCccccHHHHHHHHHhCCEEEEECCccc-cC---CCH
Confidence 4688888855441 1 1223577788888999998765542 12212222367799999999654 32 345
Q ss_pred HHHHHHH
Q 014568 100 SIVDFVD 106 (422)
Q Consensus 100 ~L~~Fi~ 106 (422)
.|+.|+|
T Consensus 88 ~LK~~iD 94 (204)
T 2amj_A 88 TVKKYID 94 (204)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6777777
No 32
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre, flavoproteins, lactamase-fold; HET: FMN; 2.5A {Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Probab=64.65 E-value=19 Score=35.06 Aligned_cols=105 Identities=10% Similarity=0.058 Sum_probs=63.4
Q ss_pred CCeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH
Q 014568 29 DRRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 29 ~~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
..|+++++-+..- +..=....+.|++.|.+++.....+.+..-.......||.+||..|.-- +... ..+.+|++
T Consensus 252 ~~kv~i~y~S~~Gnt~~lA~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~gsp~~~---~~~~-~~~~~~l~ 327 (402)
T 1e5d_A 252 TNKVVIFYDSMWHSTEKMARVLAESFRDEGCTVKLMWCKACHHSQIMSEISDAGAVIVGSPTHN---NGIL-PYVAGTLQ 327 (402)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEETTTSCHHHHHHHHHTCSEEEEECCCBT---TBCC-HHHHHHHH
T ss_pred CCcEEEEEECCChhHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccC---CCch-HHHHHHHH
Confidence 5799999977522 2222346667888999988765443322111112257899999888654 1222 24566655
Q ss_pred C-------CCcEEEEeCC-C---CcHHHHHHHHHcCceecCC
Q 014568 107 S-------GHDLIVAADS-N---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 107 ~-------GGNlLi~~~~-~---~~~~l~~ll~elGI~~~~~ 137 (422)
. |..+.+.+.. . ....++..+.++|..+...
T Consensus 328 ~l~~~~l~~k~~~~f~t~g~~~~a~~~l~~~l~~~G~~~~~~ 369 (402)
T 1e5d_A 328 YIKGLRPQNKIGGAFGSFGWSGESTKVLAEWLTGMGFDMPAT 369 (402)
T ss_dssp HHHHTCCCSCEEEEEEEESSSCHHHHHHHHHHHHTTCBCCSC
T ss_pred HhhhcccCCCEEEEEEcCCCccHHHHHHHHHHHHCCCEEecC
Confidence 3 4555544432 2 2367888999999988764
No 33
>3pjl_A 34 kDa membrane antigen; IG fold, metal binding, human lactoferrin, membrane protein; 1.70A {Treponema pallidum} PDB: 3pjn_A
Probab=63.52 E-value=31 Score=31.43 Aligned_cols=70 Identities=16% Similarity=0.245 Sum_probs=50.5
Q ss_pred CCceEEEEEEEEEeC--------CeeeecccCCeEEEEEEeC--ceEeecc---ccCCCceEEEEEecCCceeeeEEEEe
Q 014568 299 NDDLEYSVEIYEWSG--------TSWEPYVSDDVQVQFYMMS--PYVLKTL---STDQKGHYSAEFKVPDVYGVFQFKVE 365 (422)
Q Consensus 299 ~d~v~y~i~i~e~~~--------~~w~P~~~~d~QlEf~mld--Py~R~~l---~~~~~~~y~~~f~~PD~hGvf~f~v~ 365 (422)
+.+|+.+.+|+-..+ |.|+||- .|..|++..| .-..-++ ...+.-.|-.++|||+-=|-|+-++.
T Consensus 93 ~sDiHLEADIhA~~~~n~~Gf~~G~wvPYL--tV~y~Itk~d~~~v~eGtfmPMvAsDGPHYGdNVKL~~G~G~Y~vt~~ 170 (212)
T 3pjl_A 93 EADCHIEADIHANEAGKDLGYGVGDFVPYL--RVVAFLQKHGSEKVQKVMFAPMNAGDGPHYGANVKFEEGLGTYKVRFE 170 (212)
T ss_dssp TCSEEEEEEEEECGGGGGGTCCTTCBCCSC--EEEEEEEETTCCCCEEEECEEEEETTEEEEEEEECCTTCSEEEEEEEE
T ss_pred hCCeEEEEeccccccCCcccccCCCCCcCc--eeEEEEEeCCCCeEEEeeccccccCcCCccceeeccCCCCccEEEEEE
Confidence 357999999998853 7999994 5888888753 3333332 22444579999999877799988877
Q ss_pred eeecc
Q 014568 366 YQRLG 370 (422)
Q Consensus 366 Y~R~G 370 (422)
..-|+
T Consensus 171 I~pPs 175 (212)
T 3pjl_A 171 IAAPS 175 (212)
T ss_dssp EECCC
T ss_pred EcCCC
Confidence 77664
No 34
>2hr0_A Complement C3 beta chain; complement component C3B, immune system; HET: THC; 2.26A {Homo sapiens} PDB: 2i07_A* 2wii_A* 2win_A* 2xwj_A* 3l3o_A* 3l5n_A* 3nms_A* 3nsa_A* 3ohx_A* 3t4a_A 2a74_A* 2a73_A* 2qki_A* 3g6j_A 2ice_A* 2icf_A* 2xwb_A*
Probab=63.45 E-value=17 Score=38.33 Aligned_cols=70 Identities=19% Similarity=0.361 Sum_probs=53.8
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccC-CCceEEEEEecCCc--eeeeEEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTD-QKGHYSAEFKVPDV--YGVFQFKV 364 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy----~R~~l~~~-~~~~y~~~f~~PD~--hGvf~f~v 364 (422)
+...||-.|.|.|.+=+- +.++.|.. +. +.+...||- .|..++.+ ..|.|+..|+||+. -|.|+.++
T Consensus 113 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~--v~v~l~dP~g~~i~~~~~~~~~~~G~~~~~f~Lp~~~~~G~w~I~v 186 (645)
T 2hr0_A 113 DKTIYTPGSTVLYRIFTV---NHKLLPVG-RT--VMVNIENPEGIPVKQDSLSSQNQLGVLPLSWDIPELVNMGQWKIRA 186 (645)
T ss_dssp SCSBCCTTSEEEEEEEEE---CTTSCBCC-CE--EEEEEECTTSCEEEEEEEECTTTTTEEEEEEECCSSCCCSEEEEEE
T ss_pred CCccCCCCCEEEEEEEEE---CCCCcccC-ce--EEEEEECCCCCEEEEEEeeccccCCeEEEEEECCCccccccEEEEE
Confidence 466899999999998664 35688854 43 455667995 34555554 78999999999997 79999999
Q ss_pred eee
Q 014568 365 EYQ 367 (422)
Q Consensus 365 ~Y~ 367 (422)
.+.
T Consensus 187 ~~~ 189 (645)
T 2hr0_A 187 YYE 189 (645)
T ss_dssp EET
T ss_pred EEC
Confidence 884
No 35
>2hna_A Protein MIOC, flavodoxin; alpha-beta sandwich, flavodoxin fold, electron transport; NMR {Escherichia coli} PDB: 2hnb_A
Probab=62.33 E-value=58 Score=26.80 Aligned_cols=100 Identities=7% Similarity=-0.036 Sum_probs=59.0
Q ss_pred eEEEEEcCcc-c-ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC-CCCCCCccHHHHHHHHHC
Q 014568 31 RVLVLVDDFA-I-KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~~-~-~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~L~~Fi~~ 107 (422)
+++|+|.+.. . +.-=....+.|.++|+++......+ ...-..||.+||..|.. ..-. ....+.+.+.+..
T Consensus 3 ki~I~Y~S~tGnT~~~A~~ia~~l~~~g~~v~~~~~~~------~~~l~~~d~vi~g~pt~g~g~~-p~~~~~f~~~l~~ 75 (147)
T 2hna_A 3 DITLISGSTLGGAEYVAEHLAEKLEEAGFTTETLHGPL------LEDLPASGIWLVISSTHGAGDI-PDNLSPFYEALQE 75 (147)
T ss_dssp SEEEECCTTSCCCHHHHHHHHHHHHHTTCCEEEECCTT------SCSSCSEEEEEEECCTTTTCCT-TSSCHHHHHHHHH
T ss_pred eEEEEEECCchHHHHHHHHHHHHHHHCCCceEEecCCC------HHHcccCCeEEEEECccCCCCC-ChhHHHHHHHHHh
Confidence 6788887642 2 2222346667888899987642111 11235689999999976 3211 2245666666641
Q ss_pred -----CCcEE-EEeC--------CCCcHHHHHHHHHcCceecCC
Q 014568 108 -----GHDLI-VAAD--------SNASDLIREVATECGVDFDED 137 (422)
Q Consensus 108 -----GGNlL-i~~~--------~~~~~~l~~ll~elGI~~~~~ 137 (422)
.|..+ +.+- ......+...++++|......
T Consensus 76 ~~~~l~~~~~avfg~G~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (147)
T 2hna_A 76 QKPDLSAVRFGAIGIGSREYDTFCGAIDKLEAELKNSGAKQTGE 119 (147)
T ss_dssp HCCCTTEEEEEEESCCHHHHSCSSSCTTHHHHHHHHHTCEECSS
T ss_pred hccccCCCEEEEEecccCCHHHHHHHHHHHHHHHHHcCCeEeee
Confidence 23333 4331 133567999999999876654
No 36
>2q62_A ARSH; alpha/beta, flavoprotein; 1.80A {Sinorhizobium meliloti}
Probab=61.71 E-value=35 Score=31.62 Aligned_cols=106 Identities=12% Similarity=-0.028 Sum_probs=63.5
Q ss_pred CCCeEEEEEcCccc----ccchhHHHHHHHhCCceEEEeeCCCCCccc-----------cccCccccCEEEEeCCCCCCC
Q 014568 28 TDRRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDPNIGL-----------QRYGQYLYDALVLFCPSVERF 92 (422)
Q Consensus 28 ~~~r~LVlld~~~~----~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L-----------~~~g~~~yd~LVI~~p~~~~~ 92 (422)
...|+|+++-+... +..-..+.+.|++.|.+++.....+..+.- .......+|.|||..|.-- .
T Consensus 33 ~~mkIliI~GS~r~~s~t~~La~~~~~~l~~~g~eve~idL~~~pl~~~d~~~~d~~~~l~~~i~~AD~iI~~sP~Yn-~ 111 (247)
T 2q62_A 33 HRPRILILYGSLRTVSYSRLLAEEARRLLEFFGAEVKVFDPSGLPLPDAAPVSHPKVQELRELSIWSEGQVWVSPERH-G 111 (247)
T ss_dssp SCCEEEEEECCCCSSCHHHHHHHHHHHHHHHTTCEEEECCCTTCCCTTSSCTTSHHHHHHHHHHHHCSEEEEEEECSS-S
T ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHHHHhhCCCEEEEEEhhcCCCCcCCCCCCHHHHHHHHHHHHCCEEEEEeCCCC-C
Confidence 34688888877532 122234777788889999987555432110 0112256799999999764 2
Q ss_pred CCCccHHHHHHHHHCC-----------Cc-EEEEeC-C--C---CcHHHHHHHHHcCceecCC
Q 014568 93 GGSIDVASIVDFVDSG-----------HD-LIVAAD-S--N---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 93 ~~~~e~~~L~~Fi~~G-----------GN-lLi~~~-~--~---~~~~l~~ll~elGI~~~~~ 137 (422)
+ =+..|+.|||.- |+ +.+++. . + ..+.++.++..+|+...++
T Consensus 112 s---ipa~LKn~iD~l~~~~~~~~~l~gK~v~~v~tsG~~gg~~a~~~Lr~~l~~lg~~~v~~ 171 (247)
T 2q62_A 112 A---MTGIMKAQIDWIPLSTGSIRPTQGKTLAVMQVSGGSQSFNAVNQMRILGRWMRMITIPN 171 (247)
T ss_dssp S---CCHHHHHHHHTSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred C---ccHHHHHHHHHhhhccCcccccCCCEEEEEEeCCCccHHHHHHHHHHHHHHCCCEEeCC
Confidence 2 223455555531 22 333332 1 1 1468999999999998875
No 37
>1bvy_F Protein (cytochrome P450 BM-3); fatty acid monooxygenase, hemoprotein, flavoprotein, electron transfer, oxidoreductase; HET: HEM FMN; 2.03A {Bacillus megaterium} SCOP: c.23.5.1
Probab=61.51 E-value=36 Score=30.17 Aligned_cols=104 Identities=19% Similarity=0.175 Sum_probs=63.2
Q ss_pred CCCeEEEEEcCc-ccccch-hHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 28 TDRRVLVLVDDF-AIKSSH-SLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 28 ~~~r~LVlld~~-~~~~~~-S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
...+++|+|.+. +..+.. ....+.|.++|++++....++. ...-..+|.+||..|....= ...+...+.+++
T Consensus 20 ~~~kv~IvY~S~tGnTe~~A~~ia~~l~~~g~~v~v~~l~~~-----~~~l~~~d~vi~g~~Ty~G~-~p~~~~~fl~~L 93 (191)
T 1bvy_F 20 HNTPLLVLYGSNMGTAEGTARDLADIAMSKGFAPQVATLDSH-----AGNLPREGAVLIVTASYNGH-PPDNAKQFVDWL 93 (191)
T ss_dssp -CCCEEEEEECSSSHHHHHHHHHHHHHHTTTCCCEEEEGGGS-----TTCCCSSSEEEEEECCBTTB-CCTTTHHHHHHH
T ss_pred CCCeEEEEEECCChHHHHHHHHHHHHHHhCCCceEEeeHHHh-----hhhhhhCCeEEEEEeecCCC-cCHHHHHHHHHH
Confidence 468899999875 222222 3466678888999887544432 11235679999999876321 123567777777
Q ss_pred HC-------CCcEEEEe--CCCC-------cHHHHHHHHHcCceecCC
Q 014568 106 DS-------GHDLIVAA--DSNA-------SDLIREVATECGVDFDED 137 (422)
Q Consensus 106 ~~-------GGNlLi~~--~~~~-------~~~l~~ll~elGI~~~~~ 137 (422)
+. |-.+-+++ +..- ...+...++++|......
T Consensus 94 ~~~~~~~l~~~~~avfG~Gds~y~~~f~~a~~~l~~~L~~~Ga~~v~~ 141 (191)
T 1bvy_F 94 DQASADEVKGVRYSVFGCGDKNWATTYQKVPAFIDETLAAKGAENIAD 141 (191)
T ss_dssp HTCCSSCCTTCCEEEEEEECTTSGGGTTHHHHHHHHHHHTTTCCCCEE
T ss_pred HhccchhhCCCEEEEEEccCCchhhhHhHHHHHHHHHHHHCCCeEeec
Confidence 53 22333433 2222 357889999999876553
No 38
>3lzq_A P19 protein; copper binding, iron transport, iron uptake, P19 delition, T protein; 1.41A {Campylobacter jejuni} PDB: 3lzn_A 3lzo_A 3lzp_A 3lzl_A 3lzr_A
Probab=61.32 E-value=36 Score=29.76 Aligned_cols=71 Identities=17% Similarity=0.257 Sum_probs=49.6
Q ss_pred eCCceEEEEEEEEEeC-------CeeeecccCCeEEEEEEeC--ceEeecccc---CCCceEEEEEecC------Cceee
Q 014568 298 INDDLEYSVEIYEWSG-------TSWEPYVSDDVQVQFYMMS--PYVLKTLST---DQKGHYSAEFKVP------DVYGV 359 (422)
Q Consensus 298 i~d~v~y~i~i~e~~~-------~~w~P~~~~d~QlEf~mld--Py~R~~l~~---~~~~~y~~~f~~P------D~hGv 359 (422)
=..+|+.+.+|+...+ |.|+||- .|..|++..| .-.+-+|=| .+.-+|-.++|+| +-=|-
T Consensus 37 ~~sdiHlEaDIha~~~n~~Gf~~G~wvPyL--~v~y~i~~~~~~~v~~g~~mPMvA~dGpHYG~NvkL~~~~~~~~G~G~ 114 (159)
T 3lzq_A 37 SLADIHLEADIHALKNNPNGFPEGFWMPYL--TIAYELKNTDTGAIKRGTLMPMVADDGPHYGANIAMEKDKKGGFGVGN 114 (159)
T ss_dssp GGCSEEEEEEEEECTTCTTCCCTTCBCCSC--EEEEEEEETTTCCEEEEECEEEEETTEEEEEEEECSTTCTTCCCSSEE
T ss_pred hhCCeEEEEecccccCCCCcccCCcCCcCc--eEEEEEEeCCCCeEEEeecceeecCCCCccccceeccccccCCCCCcc
Confidence 3578999999999865 4999994 5777777554 334444322 3444688888888 66788
Q ss_pred eEEEEeeeecc
Q 014568 360 FQFKVEYQRLG 370 (422)
Q Consensus 360 f~f~v~Y~R~G 370 (422)
|+-++...-|+
T Consensus 115 Y~v~~~I~pP~ 125 (159)
T 3lzq_A 115 YELTFYISNPE 125 (159)
T ss_dssp EEEEEEEECGG
T ss_pred EEEEEEECCcc
Confidence 87777666554
No 39
>3ttv_A Catalase HPII; heme orientation, oxidoreductase; HET: HEM; 1.45A {Escherichia coli} PDB: 3ttt_A* 1gge_A* 1iph_A* 4ens_A* 3ttu_A* 3p9p_A* 4enq_A* 1p81_A* 3ttx_A* 4enw_A* 3ttw_A* 4ent_A* 1qws_A* 1cf9_A* 1p80_A* 1qf7_A* 4enu_A* 4enp_A* 1gg9_A* 1ggf_A* ...
Probab=59.86 E-value=19 Score=39.11 Aligned_cols=102 Identities=11% Similarity=0.173 Sum_probs=65.4
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------------cccccCccccCEEEEeCCCCCCCC
Q 014568 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------------GLQRYGQYLYDALVLFCPSVERFG 93 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------------~L~~~g~~~yd~LVI~~p~~~~~~ 93 (422)
+..+.|++||+.+--+........+.|+..|.++....++...+ .+..-....||.|||-....+.+.
T Consensus 597 ti~grKVaILlaDGfEe~El~~pvdaLr~AG~~V~vVS~~~g~V~gs~G~~V~aD~t~~~v~s~~fDALVVPGGg~~~Lr 676 (753)
T 3ttv_A 597 DVKGRVVAILLNDEVRSADLLAILKALKAKGVHAKLLYSRMGEVTADDGTVLPIAATFAGAPSLTVDAVIVPCGNIADIA 676 (753)
T ss_dssp CCTTCEEEEECCTTCCHHHHHHHHHHHHHHTCEEEEEESSSSEEECTTSCEEECCEETTTSCGGGCSEEEECCSCGGGTT
T ss_pred CCCCCEEEEEecCCCCHHHHHHHHHHHHHCCCEEEEEEcCCCeEEeCCCCEEecccchhhCCCcCCCEEEECCCChHHhh
Confidence 45578999999776677778889999999999999887664321 122222356999999665334343
Q ss_pred CCccH-HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCce
Q 014568 94 GSIDV-ASIVDFVDSGHDLIVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 94 ~~~e~-~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~ 133 (422)
.+-.. +-|+++.+.|.-|--+ ..+. .+|.+.||.
T Consensus 677 ~d~~vl~~Vre~~~~gKpIAAI-C~Gp-----~lLa~AGL~ 711 (753)
T 3ttv_A 677 DNGDANYYLMEAYKHLKPIALA-GDAR-----KFKATIKIA 711 (753)
T ss_dssp TCHHHHHHHHHHHHTTCCEEEE-GGGG-----GGGGGGTCC
T ss_pred hCHHHHHHHHHHHhcCCeEEEE-CchH-----HHHHHcCCC
Confidence 22222 4566666666544432 2221 567888984
No 40
>3l18_A Intracellular protease I; gatase1_PFPI_LIKE, hydrolase; 1.78A {Thermococcus onnurineus} SCOP: c.23.16.2 PDB: 1g2i_A
Probab=59.30 E-value=19 Score=30.66 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=52.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------cc------cccCccccCEEEEeCCCC-CCCCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GL------QRYGQYLYDALVLFCPSV-ERFGGS 95 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------~L------~~~g~~~yd~LVI~~p~~-~~~~~~ 95 (422)
+.|+++++-+.-+..+.....+.|+..||++++.+++...+ .+ ..-....||.|||-.... +.+..+
T Consensus 2 ~~ki~il~~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~v~~~~g~~i~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (168)
T 3l18_A 2 SMKVLFLSADGFEDLELIYPLHRIKEEGHEVYVASFQRGKITGKHGYSVNVDLTFEEVDPDEFDALVLPGGKAPEIVRLN 81 (168)
T ss_dssp CCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESSSEEEECTTSCEEEECEEGGGCCGGGCSEEEECCBSHHHHHTTC
T ss_pred CcEEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEECCCCEEecCCCcEEeccCChhHCCHhhCCEEEECCCcCHHHhccC
Confidence 46888888776667778889999999999999987764321 11 111224699998855432 111111
Q ss_pred -ccHHHHHHHHHCCCcEE
Q 014568 96 -IDVASIVDFVDSGHDLI 112 (422)
Q Consensus 96 -~e~~~L~~Fi~~GGNlL 112 (422)
.-.+-|+++.++|.-|.
T Consensus 82 ~~l~~~l~~~~~~~k~i~ 99 (168)
T 3l18_A 82 EKAVMITRRMFEDDKPVA 99 (168)
T ss_dssp HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHCCCEEE
Confidence 11245666777776554
No 41
>2iuf_A Catalase; oxidoreductase; HET: HDD NAG; 1.71A {Penicillium janthinellum} PDB: 2xf2_A*
Probab=58.57 E-value=34 Score=36.80 Aligned_cols=104 Identities=14% Similarity=0.089 Sum_probs=66.9
Q ss_pred CCCCeEEEEEc--CcccccchhHHHHHHHhCCceEEEeeCCCC-Cc--cccccCccccCEEEEeCCC-------------
Q 014568 27 PTDRRVLVLVD--DFAIKSSHSLYFGSLTSRGFQLEFKLADDP-NI--GLQRYGQYLYDALVLFCPS------------- 88 (422)
Q Consensus 27 ~~~~r~LVlld--~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~-~l--~L~~~g~~~yd~LVI~~p~------------- 88 (422)
..+.|++||+. +-.+........+.|++.|.+++...++.. .. .+..-....||.|||-...
T Consensus 527 l~g~kVaIL~a~~dGfe~~E~~~~~~~L~~aG~~V~vVs~~~g~~vD~t~~~~~s~~fDAVvlPGG~~g~~~~~~~~~~~ 606 (688)
T 2iuf_A 527 LDGLKVGLLASVNKPASIAQGAKLQVALSSVGVDVVVVAERXANNVDETYSASDAVQFDAVVVADGAEGLFGADSFTVEP 606 (688)
T ss_dssp CTTCEEEEECCTTCHHHHHHHHHHHHHHGGGTCEEEEEESSCCTTCCEESTTCCGGGCSEEEECTTCGGGCCTTTTTCCC
T ss_pred CCCCEEEEEecCCCCCcHHHHHHHHHHHHHCCCEEEEEeccCCcccccchhcCCccccCeEEecCCCccccccccccccc
Confidence 44789999998 666677888999999999999998876542 12 2334345789999987663
Q ss_pred -----CCCCCCCc-cHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCceecC
Q 014568 89 -----VERFGGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGVDFDE 136 (422)
Q Consensus 89 -----~~~~~~~~-e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI~~~~ 136 (422)
.+.+-.+- -.+-|+++.+.|.-|- +...+ + .+|.+.||.-..
T Consensus 607 ~~~~~~~~L~~~~~~~~~v~~~~~~gKpIa-AIc~a-p----~vL~~aGi~~~d 654 (688)
T 2iuf_A 607 SAGSGASTLYPAGRPLNILLDAFRFGKTVG-ALGSG-S----DALESGQISSER 654 (688)
T ss_dssp CTTSCCCSSSCTTHHHHHHHHHHHHTCEEE-EEGGG-H----HHHHHTTCCTTS
T ss_pred ccccchhhcccChHHHHHHHHHHHcCCEEE-EECch-H----HHHHHcCCCCCC
Confidence 22232222 2355666666665444 33222 1 367788996433
No 42
>2ds4_A Tripartite motif protein 45; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.43 E-value=37 Score=26.87 Aligned_cols=72 Identities=15% Similarity=0.155 Sum_probs=48.1
Q ss_pred ceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC---ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 295 IYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS---PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 295 ~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mld---Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
.++++...+|.|+-..-. |+=..+-.|.++++..--| .-+...++..++|+|.++|+.+. -|-|+..|.|.-
T Consensus 23 ~~~~g~~~~F~V~~~d~~-G~~~~~Gg~~~~v~i~~p~~~~~~~~~~v~D~~dGty~v~y~p~~-~G~y~i~V~~~g 97 (113)
T 2ds4_A 23 RAREKQTASFTLLCKDAA-GEIMGRGGDNVQVAVVPKDKKDSPVRTMVQDNKDGTYYISYTPKE-PGVYTVWVCIKE 97 (113)
T ss_dssp EEETTCCEEEEEECBBTT-SSBCCCCCCCEEEEEEESSCSSCCCEEEEECCSSSEEEEEEECSS-SEEEEEEEEESS
T ss_pred ceecCCcEEEEEEEECCC-CCCcccCCceEEEEEEecCCCCceeEEEEEECCCCEEEEEEEeCC-CeEEEEEEEECC
Confidence 477888888888876533 3322333567777776443 12333445567899999998655 699999998863
No 43
>4e08_A DJ-1 beta; flavodoxin-like fold, stress response, motor protein; 2.00A {Drosophila melanogaster}
Probab=58.26 E-value=23 Score=30.93 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCC-CCcc------------ccccCccccCEEEEeCCCC--CCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCPSV--ERFG 93 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d-~~l~------------L~~~g~~~yd~LVI~~p~~--~~~~ 93 (422)
.+|++|++-+.-+..+.....+-|+..||++++.+++. ..+. +..-....||.|||-.... ..+.
T Consensus 5 ~kkv~ill~~g~~~~e~~~~~~~l~~ag~~v~~~s~~~~~~v~~~~g~~i~~d~~l~~~~~~~~D~livpGG~~~~~~~~ 84 (190)
T 4e08_A 5 SKSALVILAPGAEEMEFIIAADVLRRAGIKVTVAGLNGGEAVKCSRDVQILPDTSLAQVASDKFDVVVLPGGLGGSNAMG 84 (190)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSSSCEECTTSCEEECSEETGGGTTCCCSEEEECCCHHHHHHHH
T ss_pred CcEEEEEECCCchHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCcEEECCCCHHHCCcccCCEEEECCCChHHHHhh
Confidence 47899998766667778888999999999999988775 2221 2222234689988854311 1121
Q ss_pred CC-ccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 94 GS-IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 94 ~~-~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.+ .-.+-|+++.++|. .+.+...+. .+|.+-|+
T Consensus 85 ~~~~~~~~l~~~~~~~k-~i~aiC~G~-----~~La~aGl 118 (190)
T 4e08_A 85 ESSLVGDLLRSQESGGG-LIAAICAAP-----TVLAKHGV 118 (190)
T ss_dssp HCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC
T ss_pred hCHHHHHHHHHHHHCCC-EEEEECHHH-----HHHHHCCC
Confidence 11 12244566666655 444444432 35667773
No 44
>1vhq_A Enhancing lycopene biosynthesis protein 2; structural genomics, unknown function; 1.65A {Escherichia coli} SCOP: c.23.16.2 PDB: 1oy1_A
Probab=57.99 E-value=23 Score=32.11 Aligned_cols=37 Identities=16% Similarity=0.141 Sum_probs=28.7
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEeeCCC
Q 014568 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 30 ~r~LVlld-----~~~~~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
+|+++++- +..+..+.....+-|+..||++++.+++.
T Consensus 7 ~kv~ill~~~~~~~g~~~~E~~~p~~~l~~ag~~v~~~s~~g 48 (232)
T 1vhq_A 7 KKIGVILSGCGVYDGSEIHEAVLTLLAISRSGAQAVCFAPDK 48 (232)
T ss_dssp CEEEEECCSBSTTTSBCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CeEEEEEccCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 57888887 44455667778889999999999887654
No 45
>1t0i_A YLR011WP; FMN binding protein, flavodoxin, azoreductase, oxidoreductase; HET: FMN; 2.00A {Saccharomyces cerevisiae} SCOP: c.23.5.4
Probab=57.70 E-value=27 Score=30.19 Aligned_cols=103 Identities=13% Similarity=0.185 Sum_probs=61.8
Q ss_pred eEEEEEcCcccc----cchhHHHHHHHhC------CceEEEeeCCCCCcccc-------------------------ccC
Q 014568 31 RVLVLVDDFAIK----SSHSLYFGSLTSR------GFQLEFKLADDPNIGLQ-------------------------RYG 75 (422)
Q Consensus 31 r~LVlld~~~~~----~~~S~f~~~L~~r------G~~v~~~~~~d~~l~L~-------------------------~~g 75 (422)
|+|+++-+.... ..-..+.+.|+++ |++++.....+.++... ...
T Consensus 2 kilii~gS~r~~~~t~~la~~~~~~l~~~~~~~~~g~~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (191)
T 1t0i_A 2 KVGIIMGSVRAKRVCPEIAAYVKRTIENSEELIDQKLKIQVVDLQQIALPLYEDDDELIPAQIKSVDEYADSKTRSWSRI 81 (191)
T ss_dssp EEEEEECCCCSSCSHHHHHHHHHHHHHTCTTTTTTTCEEEEECHHHHCCCSSCCCCCSCGGGCCSGGGCSCHHHHHHHHH
T ss_pred eEEEEeCCCCCCCchHHHHHHHHHHHHHhhccCCCCceEEEEehhhcCCCCCCCccccccccccCcccCCcHHHHHHHHH
Confidence 678888765321 2222466778776 79998764333211110 111
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC------CCcEEEEe-CC-C---CcHHHHHHHHHcCceecCC
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS------GHDLIVAA-DS-N---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~------GGNlLi~~-~~-~---~~~~l~~ll~elGI~~~~~ 137 (422)
-..+|.|||..|.-- . . -+..|+.|+|. |..+++++ +. . ....++.++..+|+...+.
T Consensus 82 l~~aD~iI~~sP~y~-~--~-~p~~lK~~iD~~~~~l~gK~~~~~~~G~~~~~~~~~~l~~~l~~~G~~~~~~ 150 (191)
T 1t0i_A 82 VNALDIIVFVTPQYN-W--G-YPAALKNAIDRLYHEWHGKPALVVSYGGHGGSKCNDQLQEVLHGLKMNVIGG 150 (191)
T ss_dssp HHTCSEEEEEEECBT-T--B-CCHHHHHHHHTCSTTTTTCEEEEEEEETTTTHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHhCCEEEEEeceEC-C--C-CCHHHHHHHHHHHhhcCCCEEEEEEeCCcchhhHHHHHHHHHHHCCCEEcce
Confidence 257899999999654 2 2 34567888885 44555443 22 1 1356888999999988773
No 46
>3fvw_A Putative NAD(P)H-dependent FMN reductase; Q8DWD8_strmu, SMR99, NESG, structural genomics, PSI-2, protein structure initiative; 2.30A {Streptococcus mutans}
Probab=57.48 E-value=68 Score=28.04 Aligned_cols=104 Identities=15% Similarity=0.169 Sum_probs=62.4
Q ss_pred CeEEEEEcCccccc----chhHHHHHHHhCCceEEEeeCCCCCcccc---------------ccCccccCEEEEeCCCCC
Q 014568 30 RRVLVLVDDFAIKS----SHSLYFGSLTSRGFQLEFKLADDPNIGLQ---------------RYGQYLYDALVLFCPSVE 90 (422)
Q Consensus 30 ~r~LVlld~~~~~~----~~S~f~~~L~~rG~~v~~~~~~d~~l~L~---------------~~g~~~yd~LVI~~p~~~ 90 (422)
.|+|++.-+..... .-..+.+.|+ .|.+++.....+- .+. ......+|.+|+..|---
T Consensus 3 ~kilii~gS~r~~s~t~~la~~~~~~~~-~~~~v~~~dl~~l--p~~~~~~~~~~~~~~~~~~~~i~~AD~iV~~sP~y~ 79 (192)
T 3fvw_A 3 KRILFIVGSFSEGSFNRQLAKKAETIIG-DRAQVSYLSYDRV--PFFNQDLETSVHPEVAHAREEVQEADAIWIFSPVYN 79 (192)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHHHHT-TSSEEEECCCSSC--CCCCGGGTTSCCHHHHHHHHHHHHCSEEEEECCCBT
T ss_pred CEEEEEEcCCCCCCHHHHHHHHHHHhcC-CCCEEEEEeCccC--CCCCcccccCCcHHHHHHHHHHHhCCEEEEECcccc
Confidence 37788886654221 1223555565 6889988655432 211 112267799999999764
Q ss_pred CCCCCccHHHHHHHHHC--------------CCcEEEEe-CCC-----CcHHHHHHHHHcCceecCC
Q 014568 91 RFGGSIDVASIVDFVDS--------------GHDLIVAA-DSN-----ASDLIREVATECGVDFDED 137 (422)
Q Consensus 91 ~~~~~~e~~~L~~Fi~~--------------GGNlLi~~-~~~-----~~~~l~~ll~elGI~~~~~ 137 (422)
.+-.--.+...|.+.. |..+++++ ..+ ....++.++..+|+...+.
T Consensus 80 -~~~p~~lK~~iD~~~~~~~~~~~~g~~~l~gK~~~i~~t~gg~g~~~~~~~l~~~l~~~G~~~v~~ 145 (192)
T 3fvw_A 80 -YAIPGPVKNLLDWLSRSLDLSDPTGPSVLQDKIVTVSSVANGASPEEVFEDYRSLLPFIRMHLVDQ 145 (192)
T ss_dssp -TBCCHHHHHHHHHHTSCSCSSCTTSCCTTTTCEEEEEEESCCC---CCSHHHHHHHHHTTCEECCC
T ss_pred -cCCCHHHHHHHHHhhccccccCCCCCccCCCCEEEEEEeCCCcchhHHHHHHHHHHHHcCCeeecc
Confidence 3222245667777653 22344433 222 3478999999999999986
No 47
>1oi4_A Hypothetical protein YHBO; PFPI/THIJ family, complete proteome, PFPI, THIJ, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.03A {Escherichia coli} SCOP: c.23.16.2
Probab=55.55 E-value=40 Score=29.53 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=53.2
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCC-c-------cc------cccCccccCEEEEeCCCC-CCC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPN-I-------GL------QRYGQYLYDALVLFCPSV-ERF 92 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~-l-------~L------~~~g~~~yd~LVI~~p~~-~~~ 92 (422)
...|+++++-+.-+..+.....+.|+..||++++..++... + .+ ..-....||.|||-.... +.+
T Consensus 22 ~~~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~~v~~~~~l~~~~~~~~D~livpGG~~~~~l 101 (193)
T 1oi4_A 22 LSKKIAVLITDEFEDSEFTSPADEFRKAGHEVITIEKQAGKTVKGKKGEASVTIDKSIDEVTPAEFDALLLPGGHSPDYL 101 (193)
T ss_dssp CCCEEEEECCTTBCTHHHHHHHHHHHHTTCEEEEEESSTTCEEECTTSSCEEECCEEGGGCCGGGCSEEEECCBTHHHHH
T ss_pred cCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEECCCCcceecCCCCeEEECCCChHHCCcccCCEEEECCCcCHHHh
Confidence 35688888866555667778899999999999998776542 1 11 111235789988865421 112
Q ss_pred CC-CccHHHHHHHHHCCCcEE
Q 014568 93 GG-SIDVASIVDFVDSGHDLI 112 (422)
Q Consensus 93 ~~-~~e~~~L~~Fi~~GGNlL 112 (422)
.. ..-.+.|+++.++|.-|.
T Consensus 102 ~~~~~l~~~l~~~~~~gk~i~ 122 (193)
T 1oi4_A 102 RGDNRFVTFTRDFVNSGKPVF 122 (193)
T ss_dssp TTSHHHHHHHHHHHHTTCCEE
T ss_pred hhCHHHHHHHHHHHHcCCEEE
Confidence 11 112356677777776555
No 48
>1czn_A Flavodoxin; FMN binding, redox potential, electron transport; HET: FMN; 1.70A {Synechococcus elongatus} SCOP: c.23.5.1 PDB: 1czl_A* 1czu_A* 1d04_A* 1ofv_A* 1czr_A* 1czk_A* 1czo_A* 1czh_A* 1d03_A*
Probab=54.98 E-value=44 Score=28.13 Aligned_cols=100 Identities=10% Similarity=0.120 Sum_probs=53.9
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~- 106 (422)
.|+||+|-+..- +.-=..+.+.|... ++++....++.+ ......||.+||..|.-. .+ . -+..+++|++
T Consensus 1 ~kilIvY~S~tGnT~~vA~~ia~~l~~~-~~v~~~~~~~~~----~~~l~~~d~ii~g~pty~-~g-~-~p~~~~~f~~~ 72 (169)
T 1czn_A 1 AKIGLFYGTQTGVTQTIAESIQQEFGGE-SIVDLNDIANAD----ASDLNAYDYLIIGCPTWN-VG-E-LQSDWEGIYDD 72 (169)
T ss_dssp CCEEEEECCSSSHHHHHHHHHHHHHTST-TTEEEEEGGGCC----GGGGGGCSEEEEECCEET-TT-E-ECHHHHHHGGG
T ss_pred CeEEEEEECCCcHHHHHHHHHHHHhCcc-cceEEEEhhhCC----HhHHhhCCEEEEEecccC-CC-c-CCHHHHHHHHH
Confidence 378899976521 22222344555544 556654333221 122356899999998643 22 1 2334445554
Q ss_pred ------CCCcEEEEe-CCC------C---cHHHHHHHHHcCceecCC
Q 014568 107 ------SGHDLIVAA-DSN------A---SDLIREVATECGVDFDED 137 (422)
Q Consensus 107 ------~GGNlLi~~-~~~------~---~~~l~~ll~elGI~~~~~ 137 (422)
+|..+.+.+ ... . ...++.+++++|..+...
T Consensus 73 l~~~~l~gk~~~~f~t~~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1czn_A 73 LDSVNFQGKKVAYFGAGDQVGYSDNFQDAMGILEEKISSLGSQTVGY 119 (169)
T ss_dssp GGGSCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhhccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 244555444 211 1 357778888889887763
No 49
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN; 2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3 PDB: 1ycf_A* 1ych_A*
Probab=54.45 E-value=41 Score=32.46 Aligned_cols=107 Identities=8% Similarity=0.081 Sum_probs=62.0
Q ss_pred CCeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC-CCCCccHHHHHHHH
Q 014568 29 DRRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER-FGGSIDVASIVDFV 105 (422)
Q Consensus 29 ~~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~-~~~~~e~~~L~~Fi 105 (422)
..++++++.+..- +..=....+.|.++|.+++.....+....-.......||.+||..|.-.. ..+ ..+.+++.+
T Consensus 251 ~~~i~i~y~S~~GnT~~lA~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~ii~g~p~y~~~~~~--~~~~~l~~l 328 (398)
T 1ycg_A 251 KAKAVIAYDTMWLSTEKMAHALMDGLVAGGCEVKLFKLSVSDRNDVIKEILDARAVLVGSPTINNDILP--VVSPLLDDL 328 (398)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEEGGGSCHHHHHHHHHHCSEEEEECCCBTTBCCG--GGHHHHHHH
T ss_pred cCeEEEEEECCccHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHCCEEEEECCccCccchH--HHHHHHHHH
Confidence 4678888866421 22233466778888998886533322111111112578999999886531 211 344444444
Q ss_pred H----CCCcEEEEeCC----CCcHHHHHHHHHcCceecCC
Q 014568 106 D----SGHDLIVAADS----NASDLIREVATECGVDFDED 137 (422)
Q Consensus 106 ~----~GGNlLi~~~~----~~~~~l~~ll~elGI~~~~~ 137 (422)
. +|..+.+.+.. .....++..+.++|+.+...
T Consensus 329 ~~~~~~~k~~~~~~s~g~~~~a~~~l~~~l~~~g~~~~~~ 368 (398)
T 1ycg_A 329 VGLRPKNKVGLAFGAYGWGGGAQKILEERLKAAKIELIAE 368 (398)
T ss_dssp HHHCCSSCEEEEEEEESSSCCHHHHHHHHHHHTTCEESCS
T ss_pred hccccCCCEEEEEEeCCCchHHHHHHHHHHHHCCeEEecC
Confidence 3 34444444322 22467999999999998875
No 50
>1obo_A Flavodoxin; electron transfer, flavoprotein, electron transport; HET: FMN; 1.2A {Anabaena SP} SCOP: c.23.5.1 PDB: 2v5v_A* 1dx9_A 1rcf_A* 1flv_A* 1obv_A* 2v5u_A* 1ftg_A 1qhe_A 2kqu_A 3esy_A* 3esz_A* 3esx_A*
Probab=54.04 E-value=49 Score=27.88 Aligned_cols=99 Identities=9% Similarity=0.123 Sum_probs=54.8
Q ss_pred CeEEEEEcCccc--ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-
Q 014568 30 RRVLVLVDDFAI--KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD- 106 (422)
Q Consensus 30 ~r~LVlld~~~~--~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~- 106 (422)
.|+||+|-+..- +.-=..+.+.|.+. +++....++.+. .....||.+||..|.-- .+ ..+..+.+|++
T Consensus 2 mkilIiY~S~tGnT~~vA~~ia~~l~~~--~v~~~~~~~~~~----~~l~~~d~ii~g~p~y~-~g--~~p~~~~~fl~~ 72 (169)
T 1obo_A 2 KKIGLFYGTQTGKTESVAEIIRDEFGND--VVTLHDVSQAEV----TDLNDYQYLIIGCPTLN-IG--ELQSDWEGLYSE 72 (169)
T ss_dssp CSEEEEECCSSSHHHHHHHHHHHHHCTT--TEEEEETTTCCG----GGGGGCSEEEEEEEEET-TT--EECHHHHHHHTT
T ss_pred CeEEEEEECCCchHHHHHHHHHHHhCcC--CcEEEEcccCCH----HHHhhCCEEEEEEeeCC-CC--cCCHHHHHHHHH
Confidence 478999977521 11112234445443 455543333221 12356899999999743 21 13345566765
Q ss_pred ------CCCcEEEEeCCC-------C---cHHHHHHHHHcCceecCC
Q 014568 107 ------SGHDLIVAADSN-------A---SDLIREVATECGVDFDED 137 (422)
Q Consensus 107 ------~GGNlLi~~~~~-------~---~~~l~~ll~elGI~~~~~ 137 (422)
+|..+.+.+..+ . ...++.++.++|..+...
T Consensus 73 l~~~~l~~k~~~~f~tg~~~~~~~~~~~a~~~l~~~l~~~g~~~~~~ 119 (169)
T 1obo_A 73 LDDVDFNGKLVAYFGTGDQIGYADNFQDAIGILEEKISQRGGKTVGY 119 (169)
T ss_dssp GGGCCCTTCEEEEEEECCTTTTTTSTTHHHHHHHHHHHHTTCEECCC
T ss_pred hhhcCcCCCEEEEEEECCCcchhHHHHHHHHHHHHHHHHCCCEEEEe
Confidence 355555544311 1 257888888889888764
No 51
>3ha2_A NADPH-quinone reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics, consortium, NESG; HET: MSE; 1.80A {Pediococcus pentosaceus atcc 25745}
Probab=53.92 E-value=42 Score=29.47 Aligned_cols=107 Identities=12% Similarity=0.204 Sum_probs=63.3
Q ss_pred eEEEEEcCcc-cccchhHHHHHHHhCCceEEEeeCCCCCccccc--cCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 31 RVLVLVDDFA-IKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQR--YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 31 r~LVlld~~~-~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~--~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
|+||+.-.+. ..+.-.+++....+...+++.....+ ..++.. ..-..+|.||+..|--- ++ -+..|+.|+|+
T Consensus 2 kiLii~ghP~~~~S~~~~~l~~~~~~~~~v~v~dL~~-~~D~~~~~~~l~~aD~iV~~~P~y~-~~---~pa~lK~~iDr 76 (177)
T 3ha2_A 2 QTLIIVAHPELARSNTQPFFKAAIENFSNVTWHPLVA-DFNVEQEQSLLLQNDRIILEFPLYW-YS---APALLKQWMDT 76 (177)
T ss_dssp CEEEEECCTTTTTCSSHHHHHHHHTTCTTEEEEECCT-TCCHHHHHHHHHTCSEEEEEEECBT-TB---CCHHHHHHHHH
T ss_pred eEEEEEcCCCcccCHHHHHHHHHHhcCCCEEEEECCC-cccHHHHHHHHHhCCEEEEECChhh-cc---CCHHHHHHHHH
Confidence 6888887665 44444456666666667788764444 233332 22377799999999654 32 45667777765
Q ss_pred ---------------CCcEEEEeCCCC---------------cH---HHHHHHHHcCceecCCCCeEEEec
Q 014568 108 ---------------GHDLIVAADSNA---------------SD---LIREVATECGVDFDEDPAAMVIDH 145 (422)
Q Consensus 108 ---------------GGNlLi~~~~~~---------------~~---~l~~ll~elGI~~~~~~~~~VvD~ 145 (422)
|..++++...+. .+ .++..+.-||++..+- .++..
T Consensus 77 v~~~g~~~~~~~~l~gK~~~~~~t~g~~~~~y~~~g~~g~~~~~~l~p~~~~~~~~G~~~~~~---~~~~g 144 (177)
T 3ha2_A 77 VMTTKFATGHQYALEGKELGIVVSTGDNGNAFQAGAAEKFTISELMRPFEAFANKTKMMYLPI---LAVHQ 144 (177)
T ss_dssp HSCHHHHSTTTCTTTTCEEEEEEEESSCGGGSSTTSTTCSCHHHHTHHHHHHHHHTTCEECCC---EEEES
T ss_pred HhhcccccCCCcCCCCCEEEEEEeCCCChHHhcccCcccCCHHHHHHHHHHHHHhCCCeEeCe---EEEeC
Confidence 334454332110 11 2355688899999885 45554
No 52
>3rgh_A Filamin-A; cell adhesion, cytoskeleton-complex, disease mutation, immun like, cytoskeleton, actin-binding, cell junction, shape; HET: CME; 2.44A {Homo sapiens} SCOP: b.1.18.0
Probab=53.35 E-value=26 Score=27.72 Aligned_cols=63 Identities=10% Similarity=0.171 Sum_probs=38.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldP-y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+++....|+|+-..- | .++++++.+--++ -++..++..++|+|..+|+ |..-|.|+..|.|..
T Consensus 22 ~vg~~~~F~V~~~~a--G------~~~l~v~i~~~~g~~~~~~v~d~~dGty~V~Y~-p~~~G~y~i~V~~~g 85 (100)
T 3rgh_A 22 TAGEVGQFQVDCSSA--G------SAELTIEICSEAGLPAEVYIQDHGDGTHTITYI-PLCPGAYTVTIKYGG 85 (100)
T ss_dssp ETTSCEEEEEECTTS--C------SCCEEEEEECTTSCBCEEEEEECSSSEEEEEEE-CCSSEEEEEEEEETT
T ss_pred EcCCcEEEEEEECCC--C------CceEEEEEECCCCCEeEEEEEeCCCCEEEEEEE-eCCCeeEEEEEEECC
Confidence 455555666554320 1 1334444332222 3445555567899999999 667799999999864
No 53
>2fex_A Conserved hypothetical protein; structural genomics, protein structure initiative, PSI, MIDW center for structural genomics, MCSG; 1.70A {Agrobacterium tumefaciens} SCOP: c.23.16.2
Probab=53.27 E-value=39 Score=29.35 Aligned_cols=97 Identities=14% Similarity=0.059 Sum_probs=57.5
Q ss_pred CeEEEEEcCcccccchhHHHHHHHh-CCceEEEeeCCCCCc------cc------cccCccccCEEEEeCCCCCCCC-CC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPNI------GL------QRYGQYLYDALVLFCPSVERFG-GS 95 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~-rG~~v~~~~~~d~~l------~L------~~~g~~~yd~LVI~~p~~~~~~-~~ 95 (422)
.|+++++-+.-+..+.....+.|+. .||++++.+++...+ .+ ..-....||.|||-......+. ..
T Consensus 2 ~~i~ill~~g~~~~e~~~~~~~l~~a~~~~v~~vs~~~~~v~~~~g~~v~~~~~~~~~~~~~~D~livpGG~~~~~~~~~ 81 (188)
T 2fex_A 2 TRIAIALAQDFADWEPALLAAAARSYLGVEIVHATPDGMPVTSMGGLKVTPDTSYDALDPVDIDALVIPGGLSWEKGTAA 81 (188)
T ss_dssp CEEEEECCTTBCTTSSHHHHHHHHHHSCCEEEEEETTSSCEECTTCCEEECSEEGGGCCTTTCSEEEECCBSHHHHTCCC
T ss_pred cEEEEEeCCCchHHHHHHHHHHHhhcCCceEEEEeCCCCceeeCCCcEEeccccHHHCCcccCCEEEECCCCcccccccH
Confidence 3677777555455666778899998 999999987765321 11 1112237899888654321111 12
Q ss_pred ccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 96 IDVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 96 ~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.-.+-|+++.++|.-|. +...+ - .+|.+.|+
T Consensus 82 ~l~~~l~~~~~~~k~i~-aiC~G----~-~~La~aGl 112 (188)
T 2fex_A 82 DLGGLVKRFRDRDRLVA-GICAA----A-SALGGTGV 112 (188)
T ss_dssp CCHHHHHHHHHTTCEEE-EETHH----H-HHHHHTTT
T ss_pred HHHHHHHHHHHCCCEEE-EECHH----H-HHHHHCCC
Confidence 34577888887776444 33221 1 36667775
No 54
>1sqs_A Conserved hypothetical protein; structural genomics, alpha beta protein, PSI, protein struct initiative; HET: TLA; 1.50A {Streptococcus pneumoniae} SCOP: c.23.5.5 PDB: 2oys_A*
Probab=52.42 E-value=23 Score=32.19 Aligned_cols=103 Identities=10% Similarity=0.196 Sum_probs=62.0
Q ss_pred eEEEEEcCccc----ccchhHHHHHHHhC-CceEEEeeCCCCCcccc------------------------ccCccccCE
Q 014568 31 RVLVLVDDFAI----KSSHSLYFGSLTSR-GFQLEFKLADDPNIGLQ------------------------RYGQYLYDA 81 (422)
Q Consensus 31 r~LVlld~~~~----~~~~S~f~~~L~~r-G~~v~~~~~~d~~l~L~------------------------~~g~~~yd~ 81 (422)
|+|+++.+... ...-..+.+.|+++ |.+++.....+..+.-. ...-..+|.
T Consensus 3 kIliI~gS~r~~s~T~~la~~i~~~l~~~~g~~v~~~dl~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~l~~AD~ 82 (242)
T 1sqs_A 3 KIFIYAGVRNHNSKTLEYTKRLSSIISSRNNVDISFRTPFNSELEISNSDSEELFKKGIDRQSNADDGGVIKKELLESDI 82 (242)
T ss_dssp EEEEEECCCCTTCHHHHHHHHHHHHHHHHSCCEEEEECTTTCCCCCCCCCHHHHHHHCCCSSTTTSTHHHHHHHHHHCSE
T ss_pred eEEEEECCCCCCChHHHHHHHHHHHHHHhcCCeEEEEEcccCCCCCCCchHHhhccCCCCccchHHHHHHHHHHHHHCCE
Confidence 68888877532 22233477778887 99998875554322110 011266799
Q ss_pred EEEeCCCCCCCCCCccHHHHHHHHHC-----------CCcEEEEe--C-CC---CcHHHHHHHHHcCceecCC
Q 014568 82 LVLFCPSVERFGGSIDVASIVDFVDS-----------GHDLIVAA--D-SN---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 82 LVI~~p~~~~~~~~~e~~~L~~Fi~~-----------GGNlLi~~--~-~~---~~~~l~~ll~elGI~~~~~ 137 (422)
|||..|.-- .+ -+..|+.|+|. |..+++++ + ++ ....++.++..+|+.+.+.
T Consensus 83 iI~~sP~y~-~~---~p~~lK~~iDr~~~~~~~~~l~gK~~~~i~t~g~~g~~~~~~~l~~~l~~~G~~~v~~ 151 (242)
T 1sqs_A 83 IIISSPVYL-QN---VSVDTKNFIERIGGWSHLFRLAGKFVVTLDVAESNGSDNVSEYLRDIFSYMGGQILHQ 151 (242)
T ss_dssp EEEEEEECS-SS---CCHHHHHHHHHTGGGTTTTTTTTCEEEEEEEESSCCSCCHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEccccc-cC---CCHHHHHHHHHHHHhccccccCCCEEEEEEeCCCCchhhHHHHHHHHHHHCCCeeeeE
Confidence 999999654 22 23345556653 34444332 2 22 2467889999999998774
No 55
>3l7n_A Putative uncharacterized protein; glutamine amidotransferase, transferas; 2.70A {Streptococcus mutans}
Probab=51.70 E-value=68 Score=29.04 Aligned_cols=95 Identities=15% Similarity=0.144 Sum_probs=56.6
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC--CCC---Cc----cHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER--FGG---SI----DVASI 101 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~--~~~---~~----e~~~L 101 (422)
|++|+.-.. -+....|...|+++|++++...+.... .+ ......||.|||...+... ... -+ +.+.|
T Consensus 2 ~i~vi~h~~--~e~~g~~~~~l~~~g~~~~~~~~~~~~-~~-p~~~~~~d~lii~GGp~~~~~~~~~~~~~~~~~~~~~i 77 (236)
T 3l7n_A 2 RIHFILHET--FEAPGAYLAWAALRGHDVSMTKVYRYE-KL-PKDIDDFDMLILMGGPQSPSSTKKEFPYYDAQAEVKLI 77 (236)
T ss_dssp EEEEEECCT--TSCCHHHHHHHHHTTCEEEEEEGGGTC-CC-CSCGGGCSEEEECCCSSCTTCCTTTCTTCCHHHHHHHH
T ss_pred eEEEEeCCC--CCCchHHHHHHHHCCCeEEEEeeeCCC-CC-CCCccccCEEEECCCCCCcccccccCcccchHHHHHHH
Confidence 677777443 355667888899999999976432211 01 1123568999998764431 111 11 45667
Q ss_pred HHHHHCCCcEE-EEeCCCCcHHHHHHHHHcCceec
Q 014568 102 VDFVDSGHDLI-VAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 102 ~~Fi~~GGNlL-i~~~~~~~~~l~~ll~elGI~~~ 135 (422)
.+.+++|.-+| |-. +..-++..+|-.+.
T Consensus 78 ~~~~~~~~PvLGICl------G~QlL~~~~Gg~v~ 106 (236)
T 3l7n_A 78 QKAAKSEKIIVGVCL------GAQLMGVAYGADYL 106 (236)
T ss_dssp HHHHHTTCEEEEETH------HHHHHHHHTTCCCE
T ss_pred HHHHHcCCCEEEEch------HHHHHHHHhCCEEe
Confidence 77788877676 322 45556667765433
No 56
>1rtt_A Conserved hypothetical protein; protein structure initiative, SAD with sulfur, putative REDU PSI; 1.28A {Pseudomonas aeruginosa} SCOP: c.23.5.4 PDB: 1x77_A*
Probab=51.51 E-value=31 Score=29.98 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=60.5
Q ss_pred CeEEEEEcCcccccchhHH----HHHHHhCCceEEEeeCCCCCcccc----------------ccCccccCEEEEeCCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLY----FGSLTSRGFQLEFKLADDPNIGLQ----------------RYGQYLYDALVLFCPSV 89 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f----~~~L~~rG~~v~~~~~~d~~l~L~----------------~~g~~~yd~LVI~~p~~ 89 (422)
.|+|+++-+......-... .+.|+ .|.+++.....+ +... ......+|.|||..|.-
T Consensus 7 Mkilii~gS~r~~g~t~~la~~i~~~l~-~g~~v~~~dl~~--~p~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~sP~y 83 (193)
T 1rtt_A 7 IKVLGISGSLRSGSYNSAALQEAIGLVP-PGMSIELADISG--IPLYNEDVYALGFPPAVERFREQIRAADALLFATPEY 83 (193)
T ss_dssp CEEEEEESCCSTTCHHHHHHHHHHTTCC-TTCEEEECCCTT--CCCCCHHHHTTCCCHHHHHHHHHHHHCSEEEEECCEE
T ss_pred ceEEEEECCCCCCChHHHHHHHHHHhcc-CCCeEEEEeHHH--CCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcccc
Confidence 4899999775422222223 33344 588888765444 1111 11225689999999965
Q ss_pred CCCCCCccHHHHHHHHH-------CCCcEEEEeCC-C------CcHHHHHHHHHcCceecCCCCeEEEe
Q 014568 90 ERFGGSIDVASIVDFVD-------SGHDLIVAADS-N------ASDLIREVATECGVDFDEDPAAMVID 144 (422)
Q Consensus 90 ~~~~~~~e~~~L~~Fi~-------~GGNlLi~~~~-~------~~~~l~~ll~elGI~~~~~~~~~VvD 144 (422)
- .+-.-..+.+.|.+. +|..+.+++.. + ....++.++..+|+.+.+. ..+.+.
T Consensus 84 ~-~~~p~~lK~~iD~~~~~~~~~l~gK~~~~~~t~gg~~g~~~~~~~l~~~l~~~g~~~~~~-~~~~~~ 150 (193)
T 1rtt_A 84 N-YSMAGVLKNAIDWASRPPEQPFSGKPAAILGASAGRFGTARAQYHLRQTLVFLDVHPLNK-PEVMIS 150 (193)
T ss_dssp T-TEECHHHHHHHHHHTCSSSCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHHTCEECCS-SCEEEC
T ss_pred c-cCcCHHHHHHHHHhccccCcccCCCeEEEEEeCCCCCccHHHHHHHHHHHHHcCCEEcCC-CeEEec
Confidence 4 211112344444443 24445544322 2 1357889999999999873 134554
No 57
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=50.73 E-value=21 Score=35.21 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCC
Q 014568 24 PENPTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (422)
Q Consensus 24 ~~~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~ 67 (422)
.......|++|++-+.-+........+.|+..||+++...++..
T Consensus 200 ~~~~~~~ki~ill~dg~~~~e~~~~~~~l~~ag~~v~~vs~~~~ 243 (396)
T 3uk7_A 200 KITGANKRILFLCGDYMEDYEVKVPFQSLQALGCQVDAVCPEKK 243 (396)
T ss_dssp EEECCCCEEEEECCTTEEHHHHHHHHHHHHHHTCEEEEECTTCC
T ss_pred cchhccceEEEEecCCCcchhHHHHHHHHHHCCCEEEEECCCCC
Confidence 33456789999987666667778899999999999999877643
No 58
>2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A*
Probab=50.05 E-value=1e+02 Score=25.71 Aligned_cols=83 Identities=11% Similarity=0.086 Sum_probs=55.8
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcc-ccccC-----ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCc
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIG-LQRYG-----QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS 120 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~-L~~~g-----~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~ 120 (422)
...+.|.+.||++-...|+.+.+. +.-+. +...|.+||+-|... -++.+.+-++.|-..+|.......
T Consensus 40 ~~~~~l~~~G~~v~~Vnp~~~~i~G~~~y~sl~~l~~~vDlvvi~vp~~~------~~~vv~~~~~~gi~~i~~~~g~~~ 113 (144)
T 2d59_A 40 IVMKYLLEHGYDVYPVNPKYEEVLGRKCYPSVLDIPDKIEVVDLFVKPKL------TMEYVEQAIKKGAKVVWFQYNTYN 113 (144)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGCSSCCSEEEECSCHHH------HHHHHHHHHHHTCSEEEECTTCCC
T ss_pred HHHHHHHHCCCEEEEECCCCCeECCeeccCCHHHcCCCCCEEEEEeCHHH------HHHHHHHHHHcCCCEEEECCCchH
Confidence 456778999999877766643321 11111 124588888776522 355666777888777776655567
Q ss_pred HHHHHHHHHcCceec
Q 014568 121 DLIREVATECGVDFD 135 (422)
Q Consensus 121 ~~l~~ll~elGI~~~ 135 (422)
+.+...+++.|+.+-
T Consensus 114 ~~l~~~a~~~Gi~vv 128 (144)
T 2d59_A 114 REASKKADEAGLIIV 128 (144)
T ss_dssp HHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHcCCEEE
Confidence 889999999999887
No 59
>3uk7_A Class I glutamine amidotransferase-like domain-CO protein; rossmann fold, cytosol; 2.05A {Arabidopsis thaliana}
Probab=49.84 E-value=38 Score=33.28 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=54.0
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc----------------------------cccccCccc
Q 014568 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI----------------------------GLQRYGQYL 78 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l----------------------------~L~~~g~~~ 78 (422)
..++|++|++-+.-+..+.....+-|+..||++++.+++.... .+..-....
T Consensus 10 ~~~~kv~ill~dg~e~~E~~~~~~~l~~ag~~v~~vs~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~ 89 (396)
T 3uk7_A 10 ANSRTVLILCGDYMEDYEVMVPFQALQAFGITVHTVCPGKKAGDSCPTAVHDFCGHQTYFESRGHNFTLNATFDEVDLSK 89 (396)
T ss_dssp -CCCEEEEECCTTEEHHHHHHHHHHHHHTTCEEEEECTTCCTTCEECEEEEECSSSSSCEEEECCCEECCSCGGGCCGGG
T ss_pred hcCCeEEEEeCCCccHHHHHHHHHHHHHCCCEEEEEcCCCcCCCcccccccccccchhhhhccCceeeccCChhhcCccc
Confidence 3468899999766666778889999999999999987764311 111222367
Q ss_pred cCEEEEeCCCC-CCCCCC-ccHHHHHHHHHCCCcEE
Q 014568 79 YDALVLFCPSV-ERFGGS-IDVASIVDFVDSGHDLI 112 (422)
Q Consensus 79 yd~LVI~~p~~-~~~~~~-~e~~~L~~Fi~~GGNlL 112 (422)
||.|||-.... +.+..+ .-.+-|+++.++|.-|.
T Consensus 90 ~D~livpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~ 125 (396)
T 3uk7_A 90 YDGLVIPGGRAPEYLALTASVVELVKEFSRSGKPIA 125 (396)
T ss_dssp CSEEEECCBSHHHHHTTCHHHHHHHHHHHHTTCCEE
T ss_pred CCEEEECCCcchhhcccCHHHHHHHHHHHHcCCEEE
Confidence 99998854421 112111 12345666777776555
No 60
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=49.40 E-value=64 Score=26.91 Aligned_cols=85 Identities=20% Similarity=0.323 Sum_probs=55.4
Q ss_pred HHHHHHHhCCceEEEeeCCCCCcc-ccccC-----ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCCCc
Q 014568 47 LYFGSLTSRGFQLEFKLADDPNIG-LQRYG-----QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSNAS 120 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d~~l~-L~~~g-----~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~~~ 120 (422)
...+.|.+.||++-...|+.+.+. +.-+. ....|.+||+-|. + .-.+.+.+-++.|=..+|....+..
T Consensus 32 ~~~~~L~~~G~~V~~vnp~~~~i~G~~~~~s~~el~~~vDlvii~vp~-~-----~v~~v~~~~~~~g~~~i~~~~~~~~ 105 (138)
T 1y81_A 32 IILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPP-K-----VGLQVAKEAVEAGFKKLWFQPGAES 105 (138)
T ss_dssp HHHHHHHHTTCEEEEECTTCSEETTEECBSSGGGSCTTCCEEEECSCH-H-----HHHHHHHHHHHTTCCEEEECTTSCC
T ss_pred HHHHHHHHCCCEEEEeCCCCCeECCeeecCCHHHhCCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEEcCccHH
Confidence 466778899999877766644321 11111 1345888887773 2 1345566677777666666555567
Q ss_pred HHHHHHHHHcCceecCC
Q 014568 121 DLIREVATECGVDFDED 137 (422)
Q Consensus 121 ~~l~~ll~elGI~~~~~ 137 (422)
+.+...+++.|+.+-..
T Consensus 106 ~~l~~~a~~~Gi~~igp 122 (138)
T 1y81_A 106 EEIRRFLEKAGVEYSFG 122 (138)
T ss_dssp HHHHHHHHHHTCEEECS
T ss_pred HHHHHHHHHCCCEEEcC
Confidence 88999999999987754
No 61
>2hpv_A FMN-dependent NADH-azoreductase; structural genomics, PS protein structure initiative, southeast collaboratory for S genomics, secsg; HET: FMN; 2.00A {Enterococcus faecalis}
Probab=48.48 E-value=45 Score=29.15 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=60.6
Q ss_pred eEEEEEcCccc-ccch-----hHHHHHHHhCC--ceEEEeeCC--CCCccccc---------------------------
Q 014568 31 RVLVLVDDFAI-KSSH-----SLYFGSLTSRG--FQLEFKLAD--DPNIGLQR--------------------------- 73 (422)
Q Consensus 31 r~LVlld~~~~-~~~~-----S~f~~~L~~rG--~~v~~~~~~--d~~l~L~~--------------------------- 73 (422)
|+|+++-+... .... ..+.+.|+++| .+++..... +..+....
T Consensus 3 kilii~gS~r~~~~s~t~~la~~~~~~~~~~g~~~~v~~~dL~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 82 (208)
T 2hpv_A 3 KLLVVKAHPLTKEESRSVRALETFLASYRETNPSDEIEILDVYAPETNMPEIDEELLSAWGALRAGAAFETLSENQQQKV 82 (208)
T ss_dssp EEEEEECCSSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEETTCGGGCCCCCCHHHHHHHHHHHHTCCGGGSCHHHHHHH
T ss_pred eEEEEEecCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEeeCCcccCCCCcCCHHHHHhhcCcccccccccCCHHHHhhH
Confidence 68888866542 1223 35888899887 999987665 43322110
Q ss_pred -------cCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC--------------------CCcEEEEe--C-C-C--C-
Q 014568 74 -------YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS--------------------GHDLIVAA--D-S-N--A- 119 (422)
Q Consensus 74 -------~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~--------------------GGNlLi~~--~-~-~--~- 119 (422)
..-..+|.|||..|--- .+ -+..|+.|||. |..+++++ + + . .
T Consensus 83 ~~~~~~~~~l~~aD~iv~~~P~y~-~~---~pa~lK~~iD~~~~~g~~~~~~~~~~~~~l~gK~~~~i~t~g~~~~~~~~ 158 (208)
T 2hpv_A 83 ARFNELTDQFLSADKVVIANPMWN-LN---VPTRLKAWVDTINVAGKTFQYTAEGPKPLTSGKKALHIQSNGGFYEGKDF 158 (208)
T ss_dssp HHHHHHHHHHHHCSEEEEEEECBT-TB---CCHHHHHHHHHHCCBTTTEEEETTEEEESCCSCEEEEEEEESSCCCSCSH
T ss_pred HHHHHHHHHHHhCCEEEEEecccc-CC---CCHHHHHHHHHHhcCCcEeecCCCCCccCCCCCeEEEEEecCCCCCCcch
Confidence 01256799999999654 32 23445555553 33444332 2 1 1 1
Q ss_pred -cHHHHHHHHHcCceecC
Q 014568 120 -SDLIREVATECGVDFDE 136 (422)
Q Consensus 120 -~~~l~~ll~elGI~~~~ 136 (422)
...++.++..+|+...+
T Consensus 159 ~~~~l~~~~~~~G~~~~~ 176 (208)
T 2hpv_A 159 ASQYIKAILNFIGVDQVD 176 (208)
T ss_dssp HHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHhCCCCeee
Confidence 24578889999998765
No 62
>3f2v_A General stress protein 14; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: FMN; 2.00A {Treponema denticola}
Probab=46.97 E-value=25 Score=31.42 Aligned_cols=74 Identities=14% Similarity=0.131 Sum_probs=45.2
Q ss_pred CeEEEEEcCcccc--cchhHHHHHHHhCCceEEEeeCCCC----Ccccc--ccCccccCEEEEeCCCCCCCCCCccHHHH
Q 014568 30 RRVLVLVDDFAIK--SSHSLYFGSLTSRGFQLEFKLADDP----NIGLQ--RYGQYLYDALVLFCPSVERFGGSIDVASI 101 (422)
Q Consensus 30 ~r~LVlld~~~~~--~~~S~f~~~L~~rG~~v~~~~~~d~----~l~L~--~~g~~~yd~LVI~~p~~~~~~~~~e~~~L 101 (422)
.|+||+.-.+... ..-..+.+.+++.|.+++.....+. ..++. ...-..+|.||+..|--- ++ -+..|
T Consensus 2 mkiLiI~gsp~~~~s~l~~~l~~~~~~~g~ev~~~dL~~~~~~~~~dv~~~~~~l~~AD~iv~~~P~y~-~~---~pa~l 77 (192)
T 3f2v_A 2 PKTLIILAHPNISQSTVHKHWSDAVRQHTDRFTVHELYAVYPQGKIDVAAEQKLIETHDSLVWQFPIYW-FN---CPPLL 77 (192)
T ss_dssp CCEEEEECCTTGGGCSHHHHHHHHHTTCTTTEEEEEHHHHCTTCCCCHHHHHHHHHTSSSEEEEEECBT-TB---CCHHH
T ss_pred CEEEEEEeCCCccHHHHHHHHHHHHHhCCCeEEEEEchhcCCCCchhHHHHHHHHHhCCEEEEEcChhh-cC---CCHHH
Confidence 3788888665433 2333577888888998887632211 11221 222367799999999654 32 45567
Q ss_pred HHHHHC
Q 014568 102 VDFVDS 107 (422)
Q Consensus 102 ~~Fi~~ 107 (422)
+.|+|+
T Consensus 78 K~~iDr 83 (192)
T 3f2v_A 78 KQWLDE 83 (192)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777775
No 63
>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}
Probab=46.80 E-value=13 Score=32.08 Aligned_cols=77 Identities=16% Similarity=0.147 Sum_probs=45.4
Q ss_pred cchhHHHHHHHhCCceEEEeeCC---------CCC----ccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-C
Q 014568 43 SSHSLYFGSLTSRGFQLEFKLAD---------DPN----IGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-G 108 (422)
Q Consensus 43 ~~~S~f~~~L~~rG~~v~~~~~~---------d~~----l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-G 108 (422)
+....|.+.|.+.||++..+... +.+ ++.... .+.+|.+||++.-++ |.+ -.+.|++ + |
T Consensus 61 ~~~~~~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~-a~~~d~~vLvSgD~D-F~p--lv~~lr~---~~G 133 (165)
T 2qip_A 61 PKQRQFHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEI-APDVDRVILVSGDGD-FSL--LVERIQQ---RYN 133 (165)
T ss_dssp HHHHHHHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHH-GGGCSEEEEECCCGG-GHH--HHHHHHH---HHC
T ss_pred hhHHHHHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHh-hccCCEEEEEECChh-HHH--HHHHHHH---HcC
Confidence 45678999999999998765321 111 111122 267899999887666 532 3344443 2 7
Q ss_pred CcEEEEeCCC-CcHHHHHH
Q 014568 109 HDLIVAADSN-ASDLIREV 126 (422)
Q Consensus 109 GNlLi~~~~~-~~~~l~~l 126 (422)
-.+.+++.+. .++.++..
T Consensus 134 ~~V~v~g~~~~~s~~L~~~ 152 (165)
T 2qip_A 134 KKVTVYGVPRLTSQTLIDC 152 (165)
T ss_dssp CEEEEEECGGGSCHHHHHH
T ss_pred cEEEEEeCCCcChHHHHHh
Confidence 7787777553 34444443
No 64
>3lcm_A SMU.1420, putative oxidoreductase; NADPH:quinone oxidoreductase, MDAB; HET: FAD NAP; 1.80A {Streptococcus mutans} PDB: 4f8y_A*
Probab=46.51 E-value=1.2e+02 Score=26.43 Aligned_cols=71 Identities=18% Similarity=0.084 Sum_probs=40.0
Q ss_pred eEEEEEcCccccc----chhHHHHHHHhCCceEEEeeCCCCCcc--ccc-------------------cCccccCEEEEe
Q 014568 31 RVLVLVDDFAIKS----SHSLYFGSLTSRGFQLEFKLADDPNIG--LQR-------------------YGQYLYDALVLF 85 (422)
Q Consensus 31 r~LVlld~~~~~~----~~S~f~~~L~~rG~~v~~~~~~d~~l~--L~~-------------------~g~~~yd~LVI~ 85 (422)
|+|++.-+..... .-..+.+.| +.|.+++.....+..++ +.. ..-..+|.|||.
T Consensus 2 kiLiI~gspr~~s~t~~l~~~~~~~~-~~g~~v~~~dL~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~l~~AD~iV~~ 80 (196)
T 3lcm_A 2 KILIVYTHPNPTSFNAEILKQVQTNL-SKEHTVSTLDLYAEHFDPVLQFNETHKRRDLAKVAEMEKYRDLVTWADHLIFI 80 (196)
T ss_dssp EEEEEECCSCTTSHHHHHHHHHHHHS-CTTSEEEEEETTTTTCCCCCCCCSSSCGGGGGGCGGGHHHHHHHHHCSEEEEE
T ss_pred EEEEEEeCCCCCChHHHHHHHHHHHh-cCCCeEEEEEcccCCCCccCChHHHHhhcCCCCcHHHHHHHHHHHhCCEEEEE
Confidence 6777775543321 222355556 67999998765544321 110 011557999999
Q ss_pred CCCCCCCCCCccHHHHHHHHH
Q 014568 86 CPSVERFGGSIDVASIVDFVD 106 (422)
Q Consensus 86 ~p~~~~~~~~~e~~~L~~Fi~ 106 (422)
.|--- ++ -+..|+.|+|
T Consensus 81 ~P~y~-~~---~pa~LK~~iD 97 (196)
T 3lcm_A 81 FPIWW-SG---MPAILKGFID 97 (196)
T ss_dssp EECBT-TB---CCHHHHHHHH
T ss_pred Cchhh-cc---ccHHHHHHHH
Confidence 99654 32 3445666665
No 65
>2b39_A C3; thioester, immune defense, immune system; HET: NAG BMA; 3.00A {Bos taurus}
Probab=46.08 E-value=48 Score=39.22 Aligned_cols=70 Identities=21% Similarity=0.375 Sum_probs=53.2
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eecccc-CCCceEEEEEecCCc--eeeeEEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLST-DQKGHYSAEFKVPDV--YGVFQFKV 364 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy~----R~~l~~-~~~~~y~~~f~~PD~--hGvf~f~v 364 (422)
+...||-.|.|.|.+-+- +.++.|.. ..+.++ ..||-- |..+++ +..|.|+.+|+||+. -|.|+.++
T Consensus 134 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~v~--l~dP~g~~i~~~~~~~t~~~G~~~~~f~Lp~~~~~G~w~I~v 207 (1661)
T 2b39_A 134 DKTIYTPGSTVLYRVFTV---DHKLLPVG-QTVFIT--IETPDGIPVKRDSKSSQNQFGILTLSWNIPELVNMGVWKIKA 207 (1661)
T ss_dssp SCSEECTTSEEEEEEEEE---CTTSCCCC-CCEEEE--EEETTEEEEEEEEECTTTTTSCCEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccC-ceEEEE--EECCCCCEEeeeeecccccCCeEeeeeeCCCCccccceEEEE
Confidence 466899999999998654 36688854 445544 569953 444553 478999999999997 79999999
Q ss_pred eee
Q 014568 365 EYQ 367 (422)
Q Consensus 365 ~Y~ 367 (422)
.+.
T Consensus 208 ~~~ 210 (1661)
T 2b39_A 208 YYE 210 (1661)
T ss_dssp EET
T ss_pred Eee
Confidence 885
No 66
>2ab0_A YAJL; DJ-1/THIJ superfamily, alpha-beta hydrolase fold, unknown function; 1.10A {Escherichia coli} SCOP: c.23.16.2
Probab=45.80 E-value=31 Score=30.60 Aligned_cols=82 Identities=20% Similarity=0.182 Sum_probs=49.0
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCC---Cc------cc------cccCccccCEEEEeCCC--CCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP---NI------GL------QRYGQYLYDALVLFCPS--VERF 92 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~---~l------~L------~~~g~~~yd~LVI~~p~--~~~~ 92 (422)
.|++|++-+..+..+.....+-|+..||++++..++.. .+ .+ ..-....||.|||-... .+.+
T Consensus 3 ~kV~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~~~v~~~~g~~v~~~~~l~~~~~~~~D~livpGG~~~~~~l 82 (205)
T 2ab0_A 3 ASALVCLAPGSEETEAVTTIDLLVRGGIKVTTASVASDGNLAITCSRGVKLLADAPLVEVADGEYDVIVLPGGIKGAECF 82 (205)
T ss_dssp CEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEECSSTTCCEEECTTSCEEECSEEHHHHTTSCCSEEEECCCHHHHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHHHCCCEEEEEeCCCCCCceeecCCCeEEecCCCHHHCCcccCCEEEECCCcccHHHh
Confidence 47888886665666777888999999999999877653 11 11 11123578988885542 1112
Q ss_pred CC-CccHHHHHHHHHCCCcE
Q 014568 93 GG-SIDVASIVDFVDSGHDL 111 (422)
Q Consensus 93 ~~-~~e~~~L~~Fi~~GGNl 111 (422)
.. ..-.+-|+++.++|.-|
T Consensus 83 ~~~~~l~~~l~~~~~~gk~i 102 (205)
T 2ab0_A 83 RDSTLLVETVKQFHRSGRIV 102 (205)
T ss_dssp HHCHHHHHHHHHHHHTTCEE
T ss_pred ccCHHHHHHHHHHHHcCCEE
Confidence 11 11224556666666533
No 67
>2fzv_A Putative arsenical resistance protein; flavin binding protein, structural genomics, PSI, protein ST initiative; 1.70A {Shigella flexneri 2A} SCOP: c.23.5.4
Probab=45.51 E-value=59 Score=30.83 Aligned_cols=109 Identities=15% Similarity=0.022 Sum_probs=64.5
Q ss_pred CCCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEeeCCCCCcccc------------ccCccccCEEEEeCCCCCC
Q 014568 28 TDRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADDPNIGLQ------------RYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 28 ~~~r~LVlld~~~~~----~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~------------~~g~~~yd~LVI~~p~~~~ 91 (422)
...|+|+++-+.... ..-..+.+.|++.|.+++.....+..+.-. ......+|.|||..|.--
T Consensus 57 ~~mKILiI~GS~R~~S~T~~La~~~~~~l~~~G~eveiidL~dlpl~~~d~~~~~d~v~~l~e~I~~ADgiV~aSP~Yn- 135 (279)
T 2fzv_A 57 PPVRILLLYGSLRARSFSRLAVEEAARLLQFFGAETRIFDPSDLPLPDQVQSDDHPAVKELRALSEWSEGQVWCSPERH- 135 (279)
T ss_dssp SCCEEEEEESCCSSSCHHHHHHHHHHHHHHHTTCEEEEBCCTTCCCTTTSGGGCCHHHHHHHHHHHHCSEEEEEEEEET-
T ss_pred CCCEEEEEEeCCCCCCHHHHHHHHHHHHHhhCCCEEEEEehhcCCCCccCccCCCHHHHHHHHHHHHCCeEEEEcCccc-
Confidence 457899998775421 222347777888899999875555332100 111255799999999654
Q ss_pred CCCCccHHHHHHHHHC---------CCcEEEEeC-C--C---CcHHHHHHHHHcCceecCC
Q 014568 92 FGGSIDVASIVDFVDS---------GHDLIVAAD-S--N---ASDLIREVATECGVDFDED 137 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~---------GGNlLi~~~-~--~---~~~~l~~ll~elGI~~~~~ 137 (422)
.+-.-..+.++|++.. |.-+.+++. . + ..+.++.++..+|+...++
T Consensus 136 ~sipg~LKn~IDrl~~~~g~~~~l~gK~v~lv~tsG~~gg~~a~~~Lr~~l~~lg~~vv~~ 196 (279)
T 2fzv_A 136 GQITSVMKAQIDHLPLEMAGIRPTQGRTLAVMQVSGGSQSFNAVNTLRLLGRWMRMFTIPN 196 (279)
T ss_dssp TEECHHHHHHHHHSCSCBTTBCSSTTCEEEEEEECSSSCCCHHHHHHHHHHHHTTCEECSC
T ss_pred cCcCHHHHHHHHHHhhhcccccccCCCEEEEEEECCCccHHHHHHHHHHHHHhcCcEEeCC
Confidence 2111234555555532 222333332 1 1 1367999999999998875
No 68
>1u9c_A APC35852; structural genomics, protein structure initiative, MCSG, PAR disease, chaperone, cysteine protease, PSI; 1.35A {Geobacillus stearothermophilus} SCOP: c.23.16.2
Probab=44.93 E-value=94 Score=27.52 Aligned_cols=38 Identities=13% Similarity=0.265 Sum_probs=28.6
Q ss_pred CeEEEEEcC----------cccccchhHHHHHHHhCCceEEEeeCCCC
Q 014568 30 RRVLVLVDD----------FAIKSSHSLYFGSLTSRGFQLEFKLADDP 67 (422)
Q Consensus 30 ~r~LVlld~----------~~~~~~~S~f~~~L~~rG~~v~~~~~~d~ 67 (422)
+|++|++-+ .-+..+.....+-|+..||++++.+++..
T Consensus 6 ~kv~ill~~~~~~~~~~~~G~~~~e~~~p~~~l~~ag~~v~~vs~~~~ 53 (224)
T 1u9c_A 6 KRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGG 53 (224)
T ss_dssp CEEEEEECCCCEEETTEECCBCHHHHHHHHHHHHHTTCEEEEEESSCB
T ss_pred ceEEEEECCcccccCCCCCceeHHHHHHHHHHHHHCCCeEEEECCCCC
Confidence 588888862 22335677788899999999999877653
No 69
>3r6w_A FMN-dependent NADH-azoreductase 1; nitrofurazone, P. aeruginosa, nitroreductase, flavodoxin, oxidoreductase; HET: FMN NFZ; 2.08A {Pseudomonas aeruginosa} PDB: 3lt5_A* 2v9c_A* 3keg_A*
Probab=44.76 E-value=94 Score=27.30 Aligned_cols=38 Identities=5% Similarity=0.060 Sum_probs=24.8
Q ss_pred eEEEEEcCccc-----ccchhHHHHHHHhC--CceEEEeeCCCCC
Q 014568 31 RVLVLVDDFAI-----KSSHSLYFGSLTSR--GFQLEFKLADDPN 68 (422)
Q Consensus 31 r~LVlld~~~~-----~~~~S~f~~~L~~r--G~~v~~~~~~d~~ 68 (422)
|+|++.-+... ...-..|.+.|+++ |.+++.....+..
T Consensus 3 kiLii~gSpr~~~s~t~~l~~~~~~~~~~~~~g~~v~~~dL~~~~ 47 (212)
T 3r6w_A 3 RILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVP 47 (212)
T ss_dssp CEEEEECCSCSTTCHHHHHHHHHHHHHHHHCTTCCEEEEESSSSC
T ss_pred EEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCC
Confidence 67777755432 12223588888887 9999987655443
No 70
>3i4a_A N(G),N(G)-dimethylarginine dimethylaminohydrolase 1; DDAH, nitric oxide synthase regulation, acetylation, metal-binding, zinc; HET: LN5; 1.90A {Homo sapiens} PDB: 3i2e_A* 3p8e_A* 3p8p_A*
Probab=43.91 E-value=72 Score=30.56 Aligned_cols=87 Identities=16% Similarity=0.193 Sum_probs=57.8
Q ss_pred ccchhHHHHHHH-hCCceEEEeeCCCCCcc-ccccCc--cccCEEEEeCCCCCCCCCCccHHHHHHHHHC----------
Q 014568 42 KSSHSLYFGSLT-SRGFQLEFKLADDPNIG-LQRYGQ--YLYDALVLFCPSVERFGGSIDVASIVDFVDS---------- 107 (422)
Q Consensus 42 ~~~~S~f~~~L~-~rG~~v~~~~~~d~~l~-L~~~g~--~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~---------- 107 (422)
...+..|.+.|+ +.|.+|....+.+...+ ++..+. -..+.+||.++... ....|...+.+++++
T Consensus 67 ~~q~~~l~~~Lr~~~Gv~V~~l~~~~~~Pd~vF~rD~~~vi~~~vii~~m~~~--~Rr~E~~~~~~~l~~~g~~i~~~~~ 144 (308)
T 3i4a_A 67 ERQHQLYVGVLGSKLGLQVVELPADESLPDCVFVEDVAVVCEETALITRPGAP--SRRKEVDMMKEALEKLQLNIVEMKD 144 (308)
T ss_dssp HHHHHHHHHHHHTTTCCEEEEECCCTTCTTTTCGGGGEEEETTEEEECCCSSG--GGGGGHHHHHHHHHTTTCEEEECCC
T ss_pred HHHHHHHHHHHhhcCCCEEEEcCCCCCCCCeEeecCeEEEECCEEEEeCCCch--hhhhhHHHHHHHHHHCCCeEEEccC
Confidence 468889999999 99999998766654343 444443 33477777776544 235577677766653
Q ss_pred ------CCcEEEEeCC--------CCcHHHHHHHHHc
Q 014568 108 ------GHDLIVAADS--------NASDLIREVATEC 130 (422)
Q Consensus 108 ------GGNlLi~~~~--------~~~~~l~~ll~el 130 (422)
||++|+.... +....++.|++.+
T Consensus 145 ~~~~lEGGDvl~~g~~v~vG~s~RTn~~gi~~l~~~l 181 (308)
T 3i4a_A 145 ENATLDGGDVLFTGREFFVGLSKRTNQRGAEILADTF 181 (308)
T ss_dssp TTCCCCGGGEEECSSCEEEEESSSCCHHHHHHHHHHT
T ss_pred CCCcCccceEEEECCEEEEEEchhcCHHHHHHHHHHc
Confidence 5777765431 2356888888887
No 71
>3m3p_A Glutamine amido transferase; structural genomics, nysgrc, PSI-2; HET: MSE; 1.30A {Methylobacillus flagellatus} PDB: 3l83_A*
Probab=43.80 E-value=86 Score=28.99 Aligned_cols=98 Identities=11% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC--C--ccHHHHHHH
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG--S--IDVASIVDF 104 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~--~--~e~~~L~~F 104 (422)
.+|+|||.... -+....+.+.|+++|++++...+.... ........||.|||.......... . .+.+.|.++
T Consensus 3 ~~~vliiqh~~--~e~~~~i~~~l~~~G~~v~v~~~~~~~--~~p~~~~~~d~lIl~GGp~~~~d~~~~~~~~~~~i~~~ 78 (250)
T 3m3p_A 3 LKPVMIIQFSA--SEGPGHFGDFLAGEHIPFQVLRMDRSD--PLPAEIRDCSGLAMMGGPMSANDDLPWMPTLLALIRDA 78 (250)
T ss_dssp CCCEEEEESSS--SCCCHHHHHHHHHTTCCEEEEEGGGTC--CCCSCGGGSSEEEECCCSSCTTSCCTTHHHHHHHHHHH
T ss_pred CCeEEEEECCC--CCCHHHHHHHHHHCCCeEEEEeccCCC--cCcCccccCCEEEECCCCCcccccchHHHHHHHHHHHH
Confidence 46788886443 345567888899999999986443221 011223568999987765432211 1 123456666
Q ss_pred HHCCCcEEEEeCCCCcHHHHHHHHHcCceec
Q 014568 105 VDSGHDLIVAADSNASDLIREVATECGVDFD 135 (422)
Q Consensus 105 i~~GGNlLi~~~~~~~~~l~~ll~elGI~~~ 135 (422)
++.|.-+|=. =-+..-++..+|-.+.
T Consensus 79 ~~~~~PvlGI-----C~G~Qll~~~lGG~V~ 104 (250)
T 3m3p_A 79 VAQRVPVIGH-----CLGGQLLAKAMGGEVT 104 (250)
T ss_dssp HHHTCCEEEE-----THHHHHHHHHTTCCEE
T ss_pred HHcCCCEEEE-----CHHHHHHHHHhCCEEE
Confidence 7777767622 1245567777764433
No 72
>3ot1_A 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; csgid, structural genomics; HET: MSE CSX; 1.16A {Vibrio cholerae o1 biovar el tor} SCOP: c.23.16.0
Probab=42.82 E-value=44 Score=29.66 Aligned_cols=84 Identities=24% Similarity=0.300 Sum_probs=51.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCC-CCcc------------ccccCccccCEEEEeCCC--CCCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADD-PNIG------------LQRYGQYLYDALVLFCPS--VERFG 93 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d-~~l~------------L~~~g~~~yd~LVI~~p~--~~~~~ 93 (422)
..|+++++-+.-+..+.....+-|+..||++++..++. ..+. +..-....||.|||-... .+.+.
T Consensus 9 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~g~~~v~~~~G~~v~~d~~l~~~~~~~~D~livpGG~~~~~~l~ 88 (208)
T 3ot1_A 9 SKRILVPVAHGSEEMETVIIVDTLVRAGFQVTMAAVGDKLQVQGSRGVWLTAEQTLEACSAEAFDALALPGGVGGAQAFA 88 (208)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEESSSCSEEECTTSCEEECSEEGGGCCGGGCSEEEECCCHHHHHHHH
T ss_pred CCeEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCcceecCCCcEEeCCCCHHHCCCcCCCEEEECCCchHHHHHh
Confidence 57888888766667778888999999999999988764 2221 111122578998885432 11121
Q ss_pred CC-ccHHHHHHHHHCCCcEE
Q 014568 94 GS-IDVASIVDFVDSGHDLI 112 (422)
Q Consensus 94 ~~-~e~~~L~~Fi~~GGNlL 112 (422)
.+ .-.+-|+++.++|.-|.
T Consensus 89 ~~~~l~~~l~~~~~~gk~i~ 108 (208)
T 3ot1_A 89 DSTALLALIDAFSQQGKLVA 108 (208)
T ss_dssp TCHHHHHHHHHHHHTTCEEE
T ss_pred hCHHHHHHHHHHHHcCCEEE
Confidence 11 11244556666655433
No 73
>3n7t_A Macrophage binding protein; seattle structural genomics center for infectious disease, S macrophage, pathogenic fungus, coccidioidomycosis; 2.10A {Coccidioides immitis} SCOP: c.23.16.0
Probab=42.79 E-value=58 Score=30.11 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=28.3
Q ss_pred CCeEEEEEcCccc------------ccchhHHHHHHHhCCceEEEeeCCC
Q 014568 29 DRRVLVLVDDFAI------------KSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 29 ~~r~LVlld~~~~------------~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
-+|+||++.+... ......-++.|++.|++|++.+++.
T Consensus 9 mkkvlvvlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~~aSp~g 58 (247)
T 3n7t_A 9 PRKALLAITSAHPPFWPDGKRTGLFFSEALHPFNELTAAGFEVDVASETG 58 (247)
T ss_dssp CSEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEEECCCCcccCCCCCCCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3789999977311 2345567889999999999987654
No 74
>1rw7_A YDR533CP; alpha-beta sandwich, DJ-1/THIJ/PFPI superfamily, unknown function; 1.80A {Saccharomyces cerevisiae} SCOP: c.23.16.2 PDB: 1qvv_A* 1qvz_A 1qvw_A
Probab=42.30 E-value=54 Score=29.88 Aligned_cols=38 Identities=16% Similarity=0.394 Sum_probs=27.8
Q ss_pred CeEEEEEcCcc------------cccchhHHHHHHHhCCceEEEeeCCCC
Q 014568 30 RRVLVLVDDFA------------IKSSHSLYFGSLTSRGFQLEFKLADDP 67 (422)
Q Consensus 30 ~r~LVlld~~~------------~~~~~S~f~~~L~~rG~~v~~~~~~d~ 67 (422)
+|+||++-+.. +..+.....+-|+..||++++.+++..
T Consensus 4 ~kvLivls~~~~~~~~~~~~~G~~~~E~~~p~~vl~~ag~~v~~~s~~g~ 53 (243)
T 1rw7_A 4 KKVLLALTSYNDVFYSDGAKTGVFVVEALHPFNTFRKEGFEVDFVSETGK 53 (243)
T ss_dssp CEEEEECCCCCCBCSTTSCBCCBCHHHHHHHHHHHHHTTCEEEEECSSSC
T ss_pred ceEEEEECCCCcccCCCCCCCccCHHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 58999996432 124666788889999999999877543
No 75
>3cu7_A Complement C5; Mg domain, inflammation, anaphylatoxin, cleavage of basic residues, complement alternate pathway, glycoprotein, immune response; HET: NAG; 3.10A {Homo sapiens} PDB: 3kls_A* 3km9_A* 4e0s_A* 3prx_A* 3pvm_A* 4a5w_A* 1xwe_A
Probab=42.22 E-value=36 Score=40.24 Aligned_cols=70 Identities=19% Similarity=0.407 Sum_probs=52.7
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eeccccCCCceEE-EEEecCCc--eeeeEEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLSTDQKGHYS-AEFKVPDV--YGVFQFKV 364 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy~----R~~l~~~~~~~y~-~~f~~PD~--hGvf~f~v 364 (422)
+...||-.|.|.|.+-+- +.++.|.. +.+.+ ...||-- |..++. ..|.|+ .+|+||+. -|.|+.++
T Consensus 131 DR~iYrPGqtV~~r~i~~---d~~~~p~~-~~v~v--~l~dP~G~~i~~~~~~~-~~G~~~~~~f~Lp~~~~~G~w~I~v 203 (1676)
T 3cu7_A 131 DKPVYTPDQSVKVRVYSL---NDDLKPAK-RETVL--TFIDPEGSEVDMVEEID-HIGIISFPDFKIPSNPRYGMWTIKA 203 (1676)
T ss_dssp SCSEECTTCEECEEEEEE---CTTCSCCC-CCEEE--EEEETTTEECCCEEECC-SSSEEECCCEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCcccc-cceEE--EEECCCCCEEEEEeeec-CCCceecceeeCCCCccccceEEEE
Confidence 466899999999988654 36788965 45554 4569953 233343 789999 99999998 79999999
Q ss_pred eeee
Q 014568 365 EYQR 368 (422)
Q Consensus 365 ~Y~R 368 (422)
.+..
T Consensus 204 ~~~~ 207 (1676)
T 3cu7_A 204 KYKE 207 (1676)
T ss_dssp EBSS
T ss_pred EecC
Confidence 9853
No 76
>3efe_A THIJ/PFPI family protein; structural GEN csgid, center for structural genomics of infectious disease chaperone; 2.30A {Bacillus anthracis}
Probab=41.34 E-value=92 Score=27.64 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=54.9
Q ss_pred CeEEEEEcCcccccchhHHHHHHH--------hCCceEEEeeCCCCCc------ccc------ccCccccCEEEEeCCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLT--------SRGFQLEFKLADDPNI------GLQ------RYGQYLYDALVLFCPSV 89 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~--------~rG~~v~~~~~~d~~l------~L~------~~g~~~yd~LVI~~p~~ 89 (422)
.|+++++-+.-+..+.+...+-|+ ..||++++.+++...+ .+. .-....||.|||-....
T Consensus 6 ~~v~ill~~g~~~~e~~~~~~~l~~a~~~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~~~~~~~~~~~D~livpGG~~ 85 (212)
T 3efe_A 6 KKAFLYVFNTMSDWEYGYLIAELNSGRYFKKDLAPLKVITVGANKEMITTMGGLRIKPDISLDECTLESKDLLILPGGTT 85 (212)
T ss_dssp CCEEEEECTTCCTTTTHHHHHHHHHCTTSCTTCCCCCEEEEESSSCCEECTTCCEECCSEEGGGCCCCTTCEEEECCCSC
T ss_pred cEEEEEECCCccHHHHHHHHHHHHhhhccccCCCCeEEEEEECCCCeEEcCCCCEEecCcCHHHCCccCCCEEEECCCCc
Confidence 578888866666777788888888 6799999987765422 111 11123799988855433
Q ss_pred CCCCCCc-cHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 90 ERFGGSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 90 ~~~~~~~-e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
..+..+- -.+-|+++.++|. .+.+...+ -.+|.+.|+
T Consensus 86 ~~~~~~~~l~~~l~~~~~~gk-~iaaiC~G-----~~~La~aGl 123 (212)
T 3efe_A 86 WSEEIHQPILERIGQALKIGT-IVAAICGA-----TDALANMGY 123 (212)
T ss_dssp TTSGGGHHHHHHHHHHHHHTC-EEEEETHH-----HHHHHHTTT
T ss_pred cccccCHHHHHHHHHHHHCCC-EEEEEcHH-----HHHHHHcCC
Confidence 2221111 1133455555555 44333221 144556663
No 77
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=41.23 E-value=45 Score=25.94 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=43.4
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.+.|+|++=|+...+ ..+...|++.||++... .+..-.+..-....+|.+|+ ........ ..+.+...-+.
T Consensus 6 ~~~~ilivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~-d~~l~~~~---g~~~~~~l~~~ 76 (130)
T 3eod_A 6 VGKQILIVEDEQVFR---SLLDSWFSSLGATTVLA--ADGVDALELLGGFTPDLMIC-DIAMPRMN---GLKLLEHIRNR 76 (130)
T ss_dssp TTCEEEEECSCHHHH---HHHHHHHHHTTCEEEEE--SCHHHHHHHHTTCCCSEEEE-CCC--------CHHHHHHHHHT
T ss_pred CCCeEEEEeCCHHHH---HHHHHHHHhCCceEEEe--CCHHHHHHHHhcCCCCEEEE-ecCCCCCC---HHHHHHHHHhc
Confidence 445666555544333 35666788889998753 22111122223344675554 44322222 22222222223
Q ss_pred --CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 108 --GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 108 --GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
...++++++....+..... -+.|+
T Consensus 77 ~~~~~ii~~t~~~~~~~~~~~-~~~g~ 102 (130)
T 3eod_A 77 GDQTPVLVISATENMADIAKA-LRLGV 102 (130)
T ss_dssp TCCCCEEEEECCCCHHHHHHH-HHHCC
T ss_pred CCCCCEEEEEcCCCHHHHHHH-HHcCC
Confidence 3456666666554444433 34553
No 78
>4hs4_A Chromate reductase; triple-layered, A/B/A structure, NAD(P)H-dependent FMN reduc oxidoreductase; HET: FMN; 2.10A {Gluconacetobacter hansenii} PDB: 3s2y_A* 4h6p_A*
Probab=41.00 E-value=1.3e+02 Score=26.50 Aligned_cols=110 Identities=11% Similarity=0.121 Sum_probs=62.9
Q ss_pred CeEEEEEcCcccccchh----HHHHHHHhCCceEE-EeeCCCCCccccc----------------cCccccCEEEEeCCC
Q 014568 30 RRVLVLVDDFAIKSSHS----LYFGSLTSRGFQLE-FKLADDPNIGLQR----------------YGQYLYDALVLFCPS 88 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S----~f~~~L~~rG~~v~-~~~~~d~~l~L~~----------------~g~~~yd~LVI~~p~ 88 (422)
.|+|++.-+......-. .+.+.+ ..|.+++ .....+ +.+.. .....+|.|||..|-
T Consensus 7 mkIl~I~GS~r~~s~t~~la~~~~~~~-~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~~~~i~~AD~iVi~tP~ 83 (199)
T 4hs4_A 7 LHFVTLLGSLRKASFNAAVARALPEIA-PEGIAITPLGSIGT--FPHYSQDVQEEGFPAPVLTMAQQIATADAVVIVTPE 83 (199)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHHHHHC-CTTEEEEECCCGGG--SCCCCHHHHHHCCCHHHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEcCCCCCChHHHHHHHHHHHc-cCCCEEEEEEehhh--cCCCCccccccCCCHHHHHHHHHHHhCCEEEEEcCc
Confidence 47888876643221111 233344 3588888 654332 22211 112677999999997
Q ss_pred CCCCCCCccHHHHHHHHHC-------CCcEEEE-eCCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 014568 89 VERFGGSIDVASIVDFVDS-------GHDLIVA-ADSNA------SDLIREVATECGVDFDEDPAAMVID 144 (422)
Q Consensus 89 ~~~~~~~~e~~~L~~Fi~~-------GGNlLi~-~~~~~------~~~l~~ll~elGI~~~~~~~~~VvD 144 (422)
-. .+-.--.+...|++.. |..++++ ++.+. ...+|.++..+|+..-+. ..+.+.
T Consensus 84 Y~-~s~p~~LK~~iD~~~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~il~~lg~~~v~~-~~v~i~ 151 (199)
T 4hs4_A 84 YN-YSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQNHLRQSLVFLDAYVLNR-PEAMIG 151 (199)
T ss_dssp BT-TBCCHHHHHHHHHHTTSSSCTTTTCEEEEEEECSSSSCSHHHHHHHHHHHHHTTCEECCS-SCEEEC
T ss_pred cC-CCcCHHHHHHHHHhcccCCcccCCCEEEEEEeCCCCcccHHHHHHHHHHHHHcCCEEcCC-CeEEee
Confidence 64 2222246777777764 3334433 33221 368999999999999985 334554
No 79
>1d4a_A DT-diaphorase, quinone reductase; flavoprotein, rossman fold, oxidoreductase; HET: FAD; 1.70A {Homo sapiens} SCOP: c.23.5.3 PDB: 1dxo_A* 1gg5_A* 1kbo_A* 1kbq_A* 2f1o_A* 3jsx_A* 1h69_A* 1h66_A* 1qbg_A* 1dxq_A* 1qrd_A*
Probab=40.75 E-value=1.5e+02 Score=27.44 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=25.3
Q ss_pred CeEEEEEcCccc----ccchhHHHHHHHhCCceEEEeeCCCC
Q 014568 30 RRVLVLVDDFAI----KSSHSLYFGSLTSRGFQLEFKLADDP 67 (422)
Q Consensus 30 ~r~LVlld~~~~----~~~~S~f~~~L~~rG~~v~~~~~~d~ 67 (422)
.|+|+|+-+... +..-..+.+.|++.|++++.....+.
T Consensus 3 mkiLiI~gSpr~~s~t~~la~~~~~~l~~~g~eV~~~dL~~~ 44 (273)
T 1d4a_A 3 RRALIVLAHSERTSFNYAMKEAAAAALKKKGWEVVESDLYAM 44 (273)
T ss_dssp CEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEETTTT
T ss_pred CEEEEEEeCCCCccHHHHHHHHHHHHHHhCCCeEEEEEcccc
Confidence 378888866532 22333477778899999998765544
No 80
>3k1y_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, CDR100D; 2.50A {Corynebacterium diphtheriae} PDB: 3k20_A
Probab=40.43 E-value=81 Score=27.84 Aligned_cols=108 Identities=16% Similarity=0.122 Sum_probs=59.5
Q ss_pred CeEEEEEcCcccccchh-----HHHH----HHHhC--CceEEEeeCCCCCcccc---------------ccCccccCEEE
Q 014568 30 RRVLVLVDDFAIKSSHS-----LYFG----SLTSR--GFQLEFKLADDPNIGLQ---------------RYGQYLYDALV 83 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S-----~f~~----~L~~r--G~~v~~~~~~d~~l~L~---------------~~g~~~yd~LV 83 (422)
.|+|++.-+... ...+ .+.+ .|+++ |.+++.....+-++.+. ......+|.||
T Consensus 12 ~~il~i~GS~r~-~S~t~~La~~~~~~~~~~l~~~~~g~eve~idL~d~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iv 90 (191)
T 3k1y_A 12 RTLAVISAGLST-PSSTRQIADSISEAVTAAVSARGEALSVSTIELSELIPDLMTAMTTRVHTTKLEEITSALSASDGLV 90 (191)
T ss_dssp EEEEEEECCCSS-SCHHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCHHHHTTTTSSSCCCHHHHHHHHHHHHCSEEE
T ss_pred ceEEEEECCCCC-CCHHHHHHHHHHHHhHHHHHhcCCCceEEEEEHHhCCCcccChhhcCCCCHHHHHHHHHHHHCCEEE
Confidence 456666654433 2222 3444 56666 78888775544332221 11125679999
Q ss_pred EeCCCCCCCCCCccHHHHHHHHH----CCCcEEEEe-CC--CCc----HHHHHHHHHcCceecCCCCe
Q 014568 84 LFCPSVERFGGSIDVASIVDFVD----SGHDLIVAA-DS--NAS----DLIREVATECGVDFDEDPAA 140 (422)
Q Consensus 84 I~~p~~~~~~~~~e~~~L~~Fi~----~GGNlLi~~-~~--~~~----~~l~~ll~elGI~~~~~~~~ 140 (422)
|..|.-- .+-.-..+.+.|.+. +|..+.+++ +. ... ..++.++..+|+...|. +.
T Consensus 91 i~sP~Y~-~~~~~~lK~~iD~~~~~~l~gK~~~~v~t~G~~~~~~~~~~~L~~il~~lg~~vv~~-~v 156 (191)
T 3k1y_A 91 VATPVFK-ASYTGLFKMFFDILDTDALTGMPTIIAATAGSARHSLVLDYALRPLLSYMRAVVVPT-GV 156 (191)
T ss_dssp EEEECBT-TBSCHHHHHHHHHSCTTTTTTCEEEEEEEESSSTTTTHHHHTHHHHHHHTTCEECSC-CE
T ss_pred EEcCccC-CcCcHHHHHHHHHhhhhhcCCCEEEEEEeCCCcchhhHHHHHHHHHHHHCCCEEcCc-EE
Confidence 9999764 221223344444443 234444433 21 112 23999999999999886 44
No 81
>1n57_A Chaperone HSP31, protein YEDU; alpha-beta sandwich; 1.60A {Escherichia coli} SCOP: c.23.16.2 PDB: 1pv2_A 1izy_A 1ons_A 1izz_A
Probab=40.01 E-value=57 Score=30.83 Aligned_cols=39 Identities=21% Similarity=0.258 Sum_probs=29.1
Q ss_pred CCeEEEEEcCcc--------------cccchhHHHHHHHhCCceEEEeeCCCC
Q 014568 29 DRRVLVLVDDFA--------------IKSSHSLYFGSLTSRGFQLEFKLADDP 67 (422)
Q Consensus 29 ~~r~LVlld~~~--------------~~~~~S~f~~~L~~rG~~v~~~~~~d~ 67 (422)
++|+|+|+.+.. +..+.....+-|+..||++++.+++..
T Consensus 48 ~kkIlivlt~~~~~~~~~g~~~~~G~~~~E~~~p~~vL~~ag~~v~i~S~~g~ 100 (291)
T 1n57_A 48 KHKILVIAADERYLPTDNGKLFSTGNHPIETLLPLYHLHAAGFEFEVATISGL 100 (291)
T ss_dssp SCEEEEECCSCCEEECTTSCEEECCBCHHHHHHHHHHHHHTTCCEEEEESSSC
T ss_pred CCEEEEEeCCcccccccCCccCCCCCcHHHHHHHHHHHHHCCCEEEEEeCCCC
Confidence 468999987642 234566678889999999999877654
No 82
>3gfs_A FMN-dependent NADPH-azoreductase; flavoproteins, quinone reductase, flavodoxin, oligomerization, flavoprotein, oxidoreductase; HET: FMN; 2.10A {Bacillus subtilis} SCOP: c.23.5.4 PDB: 1nni_1* 2gsw_A* 3gfr_A* 3gfq_A*
Probab=39.65 E-value=52 Score=27.99 Aligned_cols=62 Identities=18% Similarity=0.201 Sum_probs=40.6
Q ss_pred cccCEEEEeCCCCCCCCCCccHHHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeEE
Q 014568 77 YLYDALVLFCPSVERFGGSIDVASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAMV 142 (422)
Q Consensus 77 ~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-------GGNlLi~~-~~~~------~~~l~~ll~elGI~~~~~~~~~V 142 (422)
..+|.+||..|.-. .+ -+..|+.|+|. |..+.+++ ..+. ...++.++.++|+.+.+. + +.
T Consensus 62 ~~aD~ii~~tP~y~-~~---~p~~lk~~lD~l~~~~~~gK~~~~~~~sgg~~g~~~a~~~l~~~l~~~g~~~v~~-~-v~ 135 (174)
T 3gfs_A 62 TKADAIVLLSPEYH-SG---MSGALKNALDFLSSEQFKYKPVALLAVAGGGDGGINALNNMRTVMRGVYANVIPK-Q-LV 135 (174)
T ss_dssp HHCSSEEEEEECSS-SS---CCHHHHHHHHTCCHHHHTTCEEEEEEECCSTTCSHHHHHHHHHHHHHTTCEEEEE-E-EE
T ss_pred HHCCEEEEEcCCcC-CC---CCHHHHHHHHHhCHhhhCCCcEEEEEECCCChhHHHHHHHHHHHHHHcCCEEecc-e-EE
Confidence 57899999999764 22 34556666663 45455443 3221 367999999999999885 3 44
Q ss_pred Ee
Q 014568 143 ID 144 (422)
Q Consensus 143 vD 144 (422)
+.
T Consensus 136 i~ 137 (174)
T 3gfs_A 136 LK 137 (174)
T ss_dssp EC
T ss_pred ec
Confidence 44
No 83
>3l3b_A ES1 family protein; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, isopr biosynthesis; 1.90A {Ehrlichia chaffeensis}
Probab=39.16 E-value=43 Score=30.97 Aligned_cols=37 Identities=11% Similarity=0.042 Sum_probs=29.1
Q ss_pred CeEEEEEc-----CcccccchhHHHHHHHhCCceEEEeeCCC
Q 014568 30 RRVLVLVD-----DFAIKSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 30 ~r~LVlld-----~~~~~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
+|++|++- +-.+..+.....+-|+..||++++.+++.
T Consensus 24 kkV~ill~~~~~~dG~e~~E~~~p~~vL~~aG~~V~~~S~~~ 65 (242)
T 3l3b_A 24 LNSAVILAGCGHMDGSEIREAVLVMLELDRHNVNFKCFAPNK 65 (242)
T ss_dssp CEEEEECCCSSTTTSCCHHHHHHHHHHHHHTTCEEEEEECSS
T ss_pred CEEEEEEecCCCCCCeeHHHHHHHHHHHHHCCCEEEEEecCC
Confidence 68999995 33455667778899999999999987764
No 84
>1rli_A Trp repressor binding protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bacillus subtilis} SCOP: c.23.5.6
Probab=38.82 E-value=93 Score=26.22 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=53.0
Q ss_pred CeEEEEEcCcccccchhH-HHHHHHhCCceEEEeeCCCCCcc------------------c--cccCccccCEEEEeCCC
Q 014568 30 RRVLVLVDDFAIKSSHSL-YFGSLTSRGFQLEFKLADDPNIG------------------L--QRYGQYLYDALVLFCPS 88 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~-f~~~L~~rG~~v~~~~~~d~~l~------------------L--~~~g~~~yd~LVI~~p~ 88 (422)
.|+|+++-+.... ..+. ..+.+ .+|.+++.....+..+. . ....-..+|.||+..|-
T Consensus 4 Mkilii~~S~r~~-g~t~~la~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aD~ii~~~P~ 81 (184)
T 1rli_A 4 MKIAVINGGTRSG-GNTDVLAEKA-VQGFDAEHIYLQKYPIQPIEDLRHAQGGFRPVQDDYDSIIERILQCHILIFATPI 81 (184)
T ss_dssp -CEEEEESSCSSC-CHHHHHHHHH-HTTTCCEEEEC-----------------------CHHHHHHHHHTCSEEEEEEEC
T ss_pred cEEEEEECCCCCC-ccHHHHHHHH-HcCCeEEEEEcCCCCCccCCccccccCCCCCCCCCHHHHHHHHHhCCEEEEEeCc
Confidence 3788888775322 3333 33333 35666665433332211 0 11123678999999996
Q ss_pred CCCCCCCccHHHHHHHHHC------------------CCcEEEEeC-CC--------CcHHHHHHHHHcCceecC
Q 014568 89 VERFGGSIDVASIVDFVDS------------------GHDLIVAAD-SN--------ASDLIREVATECGVDFDE 136 (422)
Q Consensus 89 ~~~~~~~~e~~~L~~Fi~~------------------GGNlLi~~~-~~--------~~~~l~~ll~elGI~~~~ 136 (422)
-- . . -+..|+.|+|+ |..+.+++. .. ....++.++..+|+...+
T Consensus 82 y~-~--~-~p~~lK~~iD~~~~~~~~~~~~~~~~~l~~K~~~~i~t~g~~~~~~~~~~~~~l~~~l~~~G~~~~~ 152 (184)
T 1rli_A 82 YW-F--G-MSGTLKLFIDRWSQTLRDPRFPDFKQQMSVKQAYVIAVGGDNPKIKGLPLIQQFEHIFHFMGMSFKG 152 (184)
T ss_dssp BT-T--B-CCHHHHHHHHTHHHHTTCTTSTTHHHHHHTSEEEEEEEESSCHHHHTHHHHHHHHHHHHHHTCEEEE
T ss_pred cc-c--C-CcHHHHHHHHHhHHhccCccccccccccCCCeEEEEEeCCCCCccchHHHHHHHHHHHHHcCCccce
Confidence 54 2 2 23445555553 444554332 11 125678889999998875
No 85
>1ka9_H Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.23.16.1
Probab=38.22 E-value=1.7e+02 Score=25.37 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=43.4
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCC-----CCCCCccHHHHHHHH
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVE-----RFGGSIDVASIVDFV 105 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~-----~~~~~~e~~~L~~Fi 105 (422)
|++|+ |-. ...+..+.+.|++.|.++....++ + ....+|.|||-.+... .+......+.|++++
T Consensus 4 ~I~ii-d~~--~~~~~~~~~~l~~~G~~~~~~~~~-~-------~l~~~d~lil~G~g~~~~~~~~l~~~~~~~~i~~~~ 72 (200)
T 1ka9_H 4 KALLI-DYG--SGNLRSAAKALEAAGFSVAVAQDP-K-------AHEEADLLVLPGQGHFGQVMRAFQESGFVERVRRHL 72 (200)
T ss_dssp EEEEE-CSS--CSCHHHHHHHHHHTTCEEEEESST-T-------SCSSCSEEEECCCSCHHHHHHTTSSSCTHHHHHHHH
T ss_pred EEEEE-eCC--CccHHHHHHHHHHCCCeEEEecCh-H-------HcccCCEEEECCCCcHHHHHHHHHhcCHHHHHHHHH
Confidence 55555 532 245566899999999999876321 1 1246899998332221 111122567888888
Q ss_pred HCCCcEE
Q 014568 106 DSGHDLI 112 (422)
Q Consensus 106 ~~GGNlL 112 (422)
++|.-+|
T Consensus 73 ~~~~Pil 79 (200)
T 1ka9_H 73 ERGLPFL 79 (200)
T ss_dssp HTTCCEE
T ss_pred HcCCeEE
Confidence 8876666
No 86
>4dik_A Flavoprotein; TM0755, electron transport, DI-iron protein; 1.75A {Thermotoga maritima} PDB: 4dil_A 1vme_A*
Probab=38.21 E-value=1.1e+02 Score=30.28 Aligned_cols=107 Identities=17% Similarity=0.112 Sum_probs=65.2
Q ss_pred CCCeEEEEEcCc--ccccchhHHHHHHHhCCceEEE-eeCCCC--CccccccCccccCEEEEeCCCCCCCCCCc--cHHH
Q 014568 28 TDRRVLVLVDDF--AIKSSHSLYFGSLTSRGFQLEF-KLADDP--NIGLQRYGQYLYDALVLFCPSVERFGGSI--DVAS 100 (422)
Q Consensus 28 ~~~r~LVlld~~--~~~~~~S~f~~~L~~rG~~v~~-~~~~d~--~l~L~~~g~~~yd~LVI~~p~~~~~~~~~--e~~~ 100 (422)
..++++|+|++. +++.-=....+.|+++|.++.. ...+.+ +.+-...+...||.|||-+|+.. +.+ ..+.
T Consensus 264 ~~~~v~I~Y~S~yGnTe~mA~~ia~gl~~~Gv~~~~~~~~d~~~~~~s~i~~~i~~~~~ivlGspT~~---~~~~p~~~~ 340 (410)
T 4dik_A 264 KKGKVTVIYDSMYGFVENVMKKAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYE---AEIHPLMRF 340 (410)
T ss_dssp CTTEEEEEEECSSSHHHHHHHHHHHHHHHTTCEEEEEEECSSCCCCHHHHHHHSTTCSEEEEEECCTT---SSSCHHHHH
T ss_pred cccceeeEEecccChHHHHHHHHHHHHHhcCCceEEEEeccCCCCCHHHHHHHHHhCCeEEEEeCCcC---CcCCHHHHH
Confidence 456899999985 2233334688889999988764 222222 12212234578899999999754 122 2333
Q ss_pred HHHHHH---CCCc-EEEEeC----CCCcHHHHHHHHHcCceecCC
Q 014568 101 IVDFVD---SGHD-LIVAAD----SNASDLIREVATECGVDFDED 137 (422)
Q Consensus 101 L~~Fi~---~GGN-lLi~~~----~~~~~~l~~ll~elGI~~~~~ 137 (422)
++..+. ..|+ +.+.++ ....+.+++.++++|+++-+.
T Consensus 341 ~l~~l~~~~~~~K~~~~FGSyGWsg~a~~~~~~~l~~~~~~~v~~ 385 (410)
T 4dik_A 341 TLLEIIDKANYEKPVLVFGVHGWAPSAERTAGELLKETKFRILSF 385 (410)
T ss_dssp HHHHHHHHCCCCCEEEEEEECCCCCTTSCCHHHHHTTSSCEEEEE
T ss_pred HHHHHHhcccCCCEEEEEECCCCCcHHHHHHHHHHHHCCCEEECc
Confidence 444443 2344 445554 234578999999999987653
No 87
>2di7_A BK158_1; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=37.95 E-value=13 Score=31.25 Aligned_cols=30 Identities=10% Similarity=0.412 Sum_probs=26.5
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 339 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 339 l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
....++|+|.+++++|+..|.|+..|.|+.
T Consensus 77 v~Dn~DGsy~v~Yr~~~~~g~~~I~V~~~~ 106 (124)
T 2di7_A 77 VLDRKDGSFIVRYRMYASYKNLKVEIKFQG 106 (124)
T ss_dssp EECCSSSCCEEECCCCSCCSCCEEEEESSS
T ss_pred EEECCCCeEEEEEECCCCCCCEEEEEEECC
Confidence 334579999999999999999999999985
No 88
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=37.24 E-value=66 Score=25.51 Aligned_cols=94 Identities=7% Similarity=0.092 Sum_probs=45.7
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
...|+|++=|+.... ..+...|+..||++......++.+.+.. ...+|.+|+ ..... ..+.-.+.+.+.+
T Consensus 7 ~~~~iLivd~~~~~~---~~l~~~L~~~g~~v~~~~~~~~a~~~l~--~~~~dlii~-d~~l~----~~~g~~~~~~l~~ 76 (147)
T 2zay_A 7 KWWRIMLVDTQLPAL---AASISALSQEGFDIIQCGNAIEAVPVAV--KTHPHLIIT-EANMP----KISGMDLFNSLKK 76 (147)
T ss_dssp -CEEEEEECTTGGGG---HHHHHHHHHHTEEEEEESSHHHHHHHHH--HHCCSEEEE-ESCCS----SSCHHHHHHHHHT
T ss_pred CCceEEEEeCCHHHH---HHHHHHHHHcCCeEEEeCCHHHHHHHHH--cCCCCEEEE-cCCCC----CCCHHHHHHHHHc
Confidence 345555554444333 3566667778999875311111122222 235676665 33222 2244455555654
Q ss_pred -----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 108 -----GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 108 -----GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
+-.++++++....+..... -+.|+
T Consensus 77 ~~~~~~~pii~ls~~~~~~~~~~~-~~~g~ 105 (147)
T 2zay_A 77 NPQTASIPVIALSGRATAKEEAQL-LDMGF 105 (147)
T ss_dssp STTTTTSCEEEEESSCCHHHHHHH-HHHTC
T ss_pred CcccCCCCEEEEeCCCCHHHHHHH-HhCCC
Confidence 3356766666554444333 34554
No 89
>2rk3_A Protein DJ-1; parkinson'S disease, THIJ, PFPI, chaperone, cytoplasm, disease mutation, nucleus, oncogene, oxidation, parkinson disease; 1.05A {Homo sapiens} PDB: 1pdv_A 1pdw_A 3cy6_A 1pe0_A 3cza_A 3cyf_A 2rk4_A 3cz9_A* 3ezg_A 3f71_A 3sf8_A 1p5f_A 1ps4_A 1q2u_A 1soa_A 1ucf_A 2or3_A 3bwe_A 3b38_A 3b36_A ...
Probab=36.96 E-value=56 Score=28.49 Aligned_cols=98 Identities=11% Similarity=0.105 Sum_probs=57.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCC-C------ccc------ccc-CccccCEEEEeCCC--CCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDP-N------IGL------QRY-GQYLYDALVLFCPS--VERF 92 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~-~------l~L------~~~-g~~~yd~LVI~~p~--~~~~ 92 (422)
..|+++++-+.-+..+.....+-|+..||++++.+++.. . +.+ ..- ....||.|||-... ...+
T Consensus 3 ~~~v~ill~~g~~~~e~~~~~~~l~~ag~~v~~vs~~~~~~v~~~~g~~v~~d~~l~~~~~~~~~D~livpGG~~~~~~l 82 (197)
T 2rk3_A 3 SKRALVILAKGAEEMETVIPVDVMRRAGIKVTVAGLAGKDPVQCSRDVVICPDASLEDAKKEGPYDVVVLPGGNLGAQNL 82 (197)
T ss_dssp CCEEEEEECTTCCHHHHHHHHHHHHHTTCEEEEEETTCSSCEECTTSCEECCSEEHHHHHTTCCCSEEEECCCHHHHHHH
T ss_pred CCEEEEEECCCCcHHHHHHHHHHHHHCCCEEEEEEcCCCCccccCCCCEEeCCcCHHHcCCccCCCEEEECCCchhHHHh
Confidence 367888886655667778889999999999999877642 1 111 111 23678998885542 1112
Q ss_pred CC-CccHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 93 GG-SIDVASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 93 ~~-~~e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.. ..-.+-|+++.++|. .+.+...+. .+|.+.|+
T Consensus 83 ~~~~~~~~~l~~~~~~gk-~i~aiC~G~-----~~La~aGl 117 (197)
T 2rk3_A 83 SESAAVKEILKEQENRKG-LIATICAGP-----TALLAHEI 117 (197)
T ss_dssp HHCHHHHHHHHHHHHTTC-EEEEETTTH-----HHHHHTTC
T ss_pred hhCHHHHHHHHHHHHcCC-EEEEECHHH-----HHHHHCCC
Confidence 11 112245556666655 443443332 36666676
No 90
>3hr4_A Nitric oxide synthase, inducible; inducible nitric oxide synthase, NOS, INOS, CALM binding, FAD, FMN, heme, iron, metal-binding, NADP, oxidore phosphoprotein; HET: FMN; 2.50A {Homo sapiens}
Probab=36.82 E-value=2.4e+02 Score=25.53 Aligned_cols=104 Identities=11% Similarity=-0.044 Sum_probs=62.2
Q ss_pred CCCeEEEEEcCc-ccccchhH-HHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCC-CCCCCCccHHHHHHH
Q 014568 28 TDRRVLVLVDDF-AIKSSHSL-YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVDF 104 (422)
Q Consensus 28 ~~~r~LVlld~~-~~~~~~S~-f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~L~~F 104 (422)
...+++|+|.+. +..+.... +.+.| ++|++++....++.++. .-..++.+|+..|+. ..-. ..+.+.+.++
T Consensus 39 ~~~kv~IlYgS~tGnte~~A~~La~~l-~~g~~v~v~~l~~~~~~----~l~~~~~vI~~tsTyG~Ge~-Pdna~~F~~~ 112 (219)
T 3hr4_A 39 SRVRVTILFATETGKSEALAWDLGALF-SCAFNPKVVCMDKYRLS----CLEEERLLLVVTSTFGNGDC-PGNGEKLKKS 112 (219)
T ss_dssp TSCEEEEEEECSSSHHHHHHHHHHHHH-TTTSEEEEEEGGGCCGG----GGGTCSEEEEEEECBTTTBC-CGGGHHHHHH
T ss_pred cCCcEEEEEECCchHHHHHHHHHHHHH-HcCCCeEEEEcccCCHh----HhccCCeEEEEEeccCCCcC-CHHHHHHHHH
Confidence 567899999875 33333333 33445 57998887644443221 124678888888876 3221 2356677777
Q ss_pred HHCC-----C-cEEEEe--CCC------CcHHHHHHHHHcCceecCC
Q 014568 105 VDSG-----H-DLIVAA--DSN------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 105 i~~G-----G-NlLi~~--~~~------~~~~l~~ll~elGI~~~~~ 137 (422)
+.+- | +.-|++ +.. ....+...|+++|....-.
T Consensus 113 L~~~~~~l~~~~~aVfGlGdssY~~F~~a~k~ld~~L~~lGa~~l~~ 159 (219)
T 3hr4_A 113 LFMLKELNNKFRYAVFGLGSSMYPRFCAFAHDIDQKLSHLGASQLTP 159 (219)
T ss_dssp HHHCCCCSSCCEEEEEEEECTTSSSTTHHHHHHHHHHHHHTCEESSC
T ss_pred HHhcchhhcCCEEEEEeCCCcchHHHhHHHHHHHHHHHHCCCCEeeC
Confidence 7642 2 233443 222 1467888999999887654
No 91
>2d7n_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=36.59 E-value=58 Score=25.56 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=31.7
Q ss_pred CCeEEEEEEeCc-eEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 322 DDVQVQFYMMSP-YVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 322 ~d~QlEf~mldP-y~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+|+..|..+-+- -.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 22 ~~l~v~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~g 68 (93)
T 2d7n_A 22 GELTGEVRMPSGKTARPNITDNKDGTITVRYA-PTEKGLHQMGIKYDG 68 (93)
T ss_dssp SCEEEEEECTTSCEECCEEEECSSSCEEEEEC-CSSCEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccceEEEECCCCEEEEEEE-ccCCEEEEEEEEECC
Confidence 666666654331 2334455567899999997 555699999999975
No 92
>2d7p_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10 PDB: 2eeb_A
Probab=35.27 E-value=45 Score=26.98 Aligned_cols=61 Identities=15% Similarity=0.275 Sum_probs=42.6
Q ss_pred eEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceEe---eccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 296 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYVL---KTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 296 Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy~R---~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
-+++....|.|+...-. . +|+..+.+|--+ ..++..++|+|.++| .|..-|.|+..|.|..
T Consensus 24 ~~vg~~~~F~V~~~~a~---------g--~l~v~V~~P~g~~~~~~v~d~~~gty~v~y-tP~~~G~h~v~V~~~g 87 (112)
T 2d7p_A 24 LKVNQPASFAVQLNGAR---------G--VIDARVHTPSGAVEECYVSELDSDKHTIRF-IPHENGVHSIDVKFNG 87 (112)
T ss_dssp CCTTCCEEEEEECTTCC---------S--CEEEEEECSSSCBCCCEECSCBTTEEEEEE-CCSSCEEEEEEEEESS
T ss_pred cccCCcEEEEEEeCCCC---------C--CEEEEEECCCCCeeeeEEEeCCCCeEEEEE-EcCCCEeEEEEEEECC
Confidence 46677777777654211 1 556666677532 334445789999999 7888999999999875
No 93
>3svl_A Protein YIEF; E. coli CHRR enzyme, chromate bioremediation, tetramer role, mutant enzymes, oxidoreductase; HET: FMN; 2.20A {Escherichia coli}
Probab=34.75 E-value=1.4e+02 Score=26.09 Aligned_cols=111 Identities=12% Similarity=0.182 Sum_probs=63.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHH---hCCceEE-EeeCCCCCcccc-----------------ccCccccCEEEEeCCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLT---SRGFQLE-FKLADDPNIGLQ-----------------RYGQYLYDALVLFCPS 88 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~---~rG~~v~-~~~~~d~~l~L~-----------------~~g~~~yd~LVI~~p~ 88 (422)
-|+|++.-+......-....+.+. ..|++++ .....+ +.+. ......+|.+||..|.
T Consensus 5 mkil~I~GS~r~~s~t~~l~~~~~~~~~~g~~v~~~idL~~--lP~~~~~~~~~~~~~~~~~~l~~~i~~AD~iv~~sP~ 82 (193)
T 3svl_A 5 LQVVTLLGSLRKGSFNGMVARTLPKIAPASMEVNALPSIAD--IPLYDADVQQEEGFPATVEALAEQIRQADGVVIVTPE 82 (193)
T ss_dssp EEEEEEECCCSTTCHHHHHHHHGGGTSCTTEEEEECCCSTT--CCCCCHHHHHHTCSCHHHHHHHHHHHHSSEEEEEECC
T ss_pred CEEEEEEccCCCCCHHHHHHHHHHHHccCCCEEEEEEeHHH--CCCCCcccccccCCCHHHHHHHHHHHHCCEEEEEecc
Confidence 477777765443222223444443 3588888 544443 2221 1112667999999997
Q ss_pred CCCCCCCccHHHHHHHHHC-------CCcEEEEe-CCCC------cHHHHHHHHHcCceecCCCCeEEEe
Q 014568 89 VERFGGSIDVASIVDFVDS-------GHDLIVAA-DSNA------SDLIREVATECGVDFDEDPAAMVID 144 (422)
Q Consensus 89 ~~~~~~~~e~~~L~~Fi~~-------GGNlLi~~-~~~~------~~~l~~ll~elGI~~~~~~~~~VvD 144 (422)
-. .+-.-..+.+.|++.. |..+.+++ +.+. ...+|.++..+|+.+.|. ....+.
T Consensus 83 y~-~~~~~~lK~~iD~~~~~~~~~~~gK~~~~~~~s~g~~gg~~a~~~Lr~~l~~lg~~v~~~-~~~~~~ 150 (193)
T 3svl_A 83 YN-YSVPGGLKNAIDWLSRLPDQPLAGKPVLIQTSSMGVIGGARCQYHLRQILVFLDAMVMNK-PEFMGG 150 (193)
T ss_dssp BT-TBCCHHHHHHHHHHHTSTTCTTTTCEEEEEEECSSTTTTHHHHHHHHHHHHHTTCEECCS-SCEEET
T ss_pred cC-CCCCHHHHHHHHHHhhcCccccCCCeEEEEEeCCCCcchHHHHHHHHHHHHHCCCEEcCC-CeEeec
Confidence 64 2212245677777653 33344443 3321 367999999999999886 334444
No 94
>1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A
Probab=34.23 E-value=1.1e+02 Score=25.51 Aligned_cols=84 Identities=12% Similarity=0.145 Sum_probs=52.9
Q ss_pred HHHHHHHhCCceEEEeeCC--CCCc-cccccC-----ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCcEEEEeCCC
Q 014568 47 LYFGSLTSRGFQLEFKLAD--DPNI-GLQRYG-----QYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHDLIVAADSN 118 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~--d~~l-~L~~~g-----~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGNlLi~~~~~ 118 (422)
...+.|.+.||++-...|+ .+.+ .+.-+. +...|..||+-|... . ++.+.+-++.|=..+|.....
T Consensus 31 ~~~~~l~~~G~~v~~vnp~~~~~~i~G~~~~~sl~el~~~vDlavi~vp~~~-~-----~~v~~~~~~~gi~~i~~~~g~ 104 (140)
T 1iuk_A 31 YVPRYLREQGYRVLPVNPRFQGEELFGEEAVASLLDLKEPVDILDVFRPPSA-L-----MDHLPEVLALRPGLVWLQSGI 104 (140)
T ss_dssp HHHHHHHHTTCEEEEECGGGTTSEETTEECBSSGGGCCSCCSEEEECSCHHH-H-----TTTHHHHHHHCCSCEEECTTC
T ss_pred HHHHHHHHCCCEEEEeCCCcccCcCCCEEecCCHHHCCCCCCEEEEEeCHHH-H-----HHHHHHHHHcCCCEEEEcCCc
Confidence 4567799999998777776 3322 111111 134588888877633 2 223445556665445665555
Q ss_pred CcHHHHHHHHHcCceecC
Q 014568 119 ASDLIREVATECGVDFDE 136 (422)
Q Consensus 119 ~~~~l~~ll~elGI~~~~ 136 (422)
..+.+...+++.|+.+-.
T Consensus 105 ~~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 105 RHPEFEKALKEAGIPVVA 122 (140)
T ss_dssp CCHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHcCCEEEc
Confidence 678899999999987764
No 95
>2dj4_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=34.11 E-value=65 Score=25.59 Aligned_cols=42 Identities=12% Similarity=0.285 Sum_probs=29.1
Q ss_pred EEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 326 VQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 326 lEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
|+..+.+|- +...++..++|+|.++|+.+ .-|.|+..|.|.-
T Consensus 45 l~V~i~~p~g~~~~~~v~d~~dGty~v~Y~p~-~~G~y~i~V~~~g 89 (108)
T 2dj4_A 45 LEVRVLGPRGLVEPVNVVDNGDGTHTVTYTPS-QEGPYMVSVKYAD 89 (108)
T ss_dssp EEEEEECSSSCEECCCCEECSSSEEEEEECCS-SCEEEEEEEEESS
T ss_pred EEEEEECCCCCEeeeEEEECCCCEEEEEEEeC-CCeeEEEEEEECC
Confidence 334445664 23344445789999999866 5699999999864
No 96
>3p0r_A Azoreductase; structural genomics, center for structural genomics of infec diseases, csgid, oxidoreductase; 1.80A {Bacillus anthracis}
Probab=33.69 E-value=1.2e+02 Score=26.85 Aligned_cols=103 Identities=11% Similarity=0.043 Sum_probs=60.1
Q ss_pred CeEEEEEcCcc-cccch-----hHHHHHHHhC--CceEEEeeCCCCCccccc----------------------------
Q 014568 30 RRVLVLVDDFA-IKSSH-----SLYFGSLTSR--GFQLEFKLADDPNIGLQR---------------------------- 73 (422)
Q Consensus 30 ~r~LVlld~~~-~~~~~-----S~f~~~L~~r--G~~v~~~~~~d~~l~L~~---------------------------- 73 (422)
.|+|+|.-+.. .+..+ ..|.+.|+++ |++++.....+..+....
T Consensus 5 ~kiLiI~gSpr~~~~S~s~~l~~~~~~~~~~~~~g~ev~~~dL~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (211)
T 3p0r_A 5 TKVLFVKANNRPAEQAVSVKLYEAFLASYKEAHPNDTVVELDLYKEELPYVGVDMINGTFKAGKGFDLTEEEAKAVAVAD 84 (211)
T ss_dssp CEEEEEECCCSCTTTCHHHHHHHHHHHHHHHHCTTSEEEEEEGGGSCCCCCCHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCeEEEEECCCCCCCcCCHHHHHhhhccCccccCCHHHHhhHHHHH
Confidence 37788776654 12222 3588888887 999998755443332110
Q ss_pred ---cCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC--------------------CCcEEEEe--C-C---C------
Q 014568 74 ---YGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS--------------------GHDLIVAA--D-S---N------ 118 (422)
Q Consensus 74 ---~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~--------------------GGNlLi~~--~-~---~------ 118 (422)
.....+|.|||..|--- ++ -+..|+.|+|. |..+++++ + + .
T Consensus 85 ~~~~~~~~aD~iv~~~P~y~-~~---~p~~lK~~iD~~~~~~~~~~~~~~g~~g~l~gK~~~~i~t~g~~~~~~~~~~~~ 160 (211)
T 3p0r_A 85 KYLNQFLEADKVVFGFPLWN-LT---IPAVLHTYIDYLNRAGKTFKYTPEGPVGLIGDKKIALLNARGGVYSEGPAAEVE 160 (211)
T ss_dssp HHHHHHHHCSEEEEEEECBT-TB---CCHHHHHHHHHHCCBTTTEECCTTCCEESCTTCEEEEEEEESSCCSSSTTGGGC
T ss_pred HHHHHHHhCCEEEEEcChhc-cc---CCHHHHHHHHHHhccCceeccCCCCCccCCCCCEEEEEEeCCCCCCCCCccchh
Confidence 01145699999999654 32 23455555552 33344332 2 1 0
Q ss_pred -CcHHHHHHHHHcCceecC
Q 014568 119 -ASDLIREVATECGVDFDE 136 (422)
Q Consensus 119 -~~~~l~~ll~elGI~~~~ 136 (422)
....++.++.-+|+....
T Consensus 161 ~~~~~l~~~l~~~G~~~v~ 179 (211)
T 3p0r_A 161 MAVKYVASMMGFFGATNME 179 (211)
T ss_dssp BSHHHHHHHHHHTTCCSCE
T ss_pred HHHHHHHHHHHhCCCCeee
Confidence 125688899999998654
No 97
>3kkl_A Probable chaperone protein HSP33; peptidase, heat shock protein, hydrolase, protease, stress response; 2.03A {Saccharomyces cerevisiae} PDB: 3mii_A*
Probab=33.37 E-value=1e+02 Score=28.29 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=27.2
Q ss_pred CeEEEEEcCc-cc-----------ccchhHHHHHHHhCCceEEEeeCCC
Q 014568 30 RRVLVLVDDF-AI-----------KSSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 30 ~r~LVlld~~-~~-----------~~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
+|+|+++-+. .. ......-.+.|++.|++|++.+++.
T Consensus 4 ~kvlivlt~~~~~~~~~g~~tG~~~~E~~~p~~~l~~aG~~V~iaS~~g 52 (244)
T 3kkl_A 4 KRALISLTSYHGPFYKDGAKTGVFVVEILRSFDTFEKHGFEVDFVSETG 52 (244)
T ss_dssp CEEEEECCCCCCCCSTTSCCCCBCHHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CEEEEEECCCCcccCCCCCcCcccHHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 6888888763 11 1355568889999999999987654
No 98
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=33.29 E-value=31 Score=31.51 Aligned_cols=60 Identities=13% Similarity=0.125 Sum_probs=36.9
Q ss_pred CeEEEEEcCccc--------ccchhHHHHHHHhCCceEEEeeCCCCCcccc--ccCccccCEEEEeCCCCC
Q 014568 30 RRVLVLVDDFAI--------KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQ--RYGQYLYDALVLFCPSVE 90 (422)
Q Consensus 30 ~r~LVlld~~~~--------~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~--~~g~~~yd~LVI~~p~~~ 90 (422)
.|+|+|.-.... +..-..+.+.|++.|++++...+++. .++. ...-..+|.||+..|---
T Consensus 26 ~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~dL~~~-~Dv~~~~~~l~~aD~iv~~~P~y~ 95 (218)
T 3rpe_A 26 SNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKITTVDQG-YDIESEIENYLWADTIIYQMPAWW 95 (218)
T ss_dssp CCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEEEGGGC-CCHHHHHHHHHHCSEEEEEEECBT
T ss_pred cceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEEECCCc-cCHHHHHHHHHhCCEEEEECChHh
Confidence 589999866532 12233567778889999998755432 2222 122256688888877543
No 99
>4fxk_A Complement C4 beta chain; immune system, proteolytic cascade; HET: NAG BMA; 3.60A {Homo sapiens} PDB: 4fxg_A*
Probab=33.27 E-value=1.2e+02 Score=31.38 Aligned_cols=70 Identities=16% Similarity=0.355 Sum_probs=51.5
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce----EeeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY----VLKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 365 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy----~R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v~ 365 (422)
+...||-.|.|.|.+=+- +.++.|.. + .+.+...||- .|..++ ...|.|+..|+||+. -|.|+.++.
T Consensus 127 Dr~iYrPGqtV~~r~i~~---d~~~~p~~-~--~~~v~i~dp~g~~v~~~~~~-~~~G~~~~~f~Lp~~~~~G~w~i~v~ 199 (656)
T 4fxk_A 127 DQPIYNPGQRVRYRVFAL---DQKMRPST-D--TITVMVENSHGLRVRKKEVY-MPSSIFQDDFVIPDISEPGTWKISAR 199 (656)
T ss_dssp SCSEECTTCEEEEEEEEE---CSSSSBCC-C--CEEEEEECTTCCEEEEEEEC-CTTSEEEEEEECCTTCCSEEEEEEEE
T ss_pred CCCCcCCCCEEEEEEEEE---CCccCcCc-c--cceEEEECCCCcEEeeeEEe-cCCceEEEEecCCCCCCCcCEEEEEE
Confidence 466899999999988553 45677864 3 3455668993 333443 457999999999975 699999998
Q ss_pred eee
Q 014568 366 YQR 368 (422)
Q Consensus 366 Y~R 368 (422)
+..
T Consensus 200 ~~~ 202 (656)
T 4fxk_A 200 FSD 202 (656)
T ss_dssp ESS
T ss_pred EcC
Confidence 854
No 100
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=32.98 E-value=1.3e+02 Score=23.68 Aligned_cols=93 Identities=18% Similarity=0.263 Sum_probs=45.4
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC--
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-- 107 (422)
.|+|++=|+...+ ..+...|++.|+........+..-.+..-....+|.+|+ ..... ..+.-.+.+.+.+
T Consensus 6 ~~ILivdd~~~~~---~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~~~ 77 (144)
T 3kht_A 6 KRVLVVEDNPDDI---ALIRRVLDRKDIHCQLEFVDNGAKALYQVQQAKYDLIIL-DIGLP----IANGFEVMSAVRKPG 77 (144)
T ss_dssp EEEEEECCCHHHH---HHHHHHHHHTTCCEEEEEESSHHHHHHHHTTCCCSEEEE-CTTCG----GGCHHHHHHHHHSSS
T ss_pred CEEEEEeCCHHHH---HHHHHHHHhcCCCeeEEEECCHHHHHHHhhcCCCCEEEE-eCCCC----CCCHHHHHHHHHhcc
Confidence 3444444433323 356677888899844333333221222223345676554 44322 2344556666655
Q ss_pred ---CCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 108 ---GHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 108 ---GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
+-.++++++....+..... -+.|
T Consensus 78 ~~~~~pii~~s~~~~~~~~~~~-~~~g 103 (144)
T 3kht_A 78 ANQHTPIVILTDNVSDDRAKQC-MAAG 103 (144)
T ss_dssp TTTTCCEEEEETTCCHHHHHHH-HHTT
T ss_pred cccCCCEEEEeCCCCHHHHHHH-HHcC
Confidence 2346666666555444433 3455
No 101
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=32.19 E-value=77 Score=25.49 Aligned_cols=95 Identities=15% Similarity=0.154 Sum_probs=42.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G 108 (422)
..|+|++=|+... ...+...|++.||++....-.++.+.+. ....+|.+|+ +.......+-.-.+.|++ ....
T Consensus 14 ~~~ILivdd~~~~---~~~l~~~L~~~g~~v~~~~~~~~a~~~l--~~~~~dlvi~-D~~l~~~~g~~~~~~l~~-~~~~ 86 (153)
T 3hv2_A 14 RPEILLVDSQEVI---LQRLQQLLSPLPYTLHFARDATQALQLL--ASREVDLVIS-AAHLPQMDGPTLLARIHQ-QYPS 86 (153)
T ss_dssp CCEEEEECSCHHH---HHHHHHHHTTSSCEEEEESSHHHHHHHH--HHSCCSEEEE-ESCCSSSCHHHHHHHHHH-HCTT
T ss_pred CceEEEECCCHHH---HHHHHHHhcccCcEEEEECCHHHHHHHH--HcCCCCEEEE-eCCCCcCcHHHHHHHHHh-HCCC
Confidence 3455544444332 3356677888899987532111112222 2345676555 433222221111133333 1123
Q ss_pred CcEEEEeCCCCcHHHHHHHHHcC
Q 014568 109 HDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 109 GNlLi~~~~~~~~~l~~ll~elG 131 (422)
-.++++++....+..... -+.|
T Consensus 87 ~~ii~~s~~~~~~~~~~~-~~~g 108 (153)
T 3hv2_A 87 TTRILLTGDPDLKLIAKA-INEG 108 (153)
T ss_dssp SEEEEECCCCCHHHHHHH-HHTT
T ss_pred CeEEEEECCCCHHHHHHH-HhCC
Confidence 446666655544444333 3344
No 102
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=31.33 E-value=1.7e+02 Score=22.30 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=44.8
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCc--eEEEeeCCCCCccccccC-----ccccCEEEEeCCCCCCCCCCccHHHH
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPNIGLQRYG-----QYLYDALVLFCPSVERFGGSIDVASI 101 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~--~v~~~~~~d~~l~L~~~g-----~~~yd~LVI~~p~~~~~~~~~e~~~L 101 (422)
+.|+|++=|+.... ..+...|+..|+ ++.......+.+.+.... ...+|.+|+ ....... +--.+
T Consensus 2 ~~~ilivdd~~~~~---~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~~~~~~dlvi~-d~~~~~~----~g~~~ 73 (140)
T 1k68_A 2 HKKIFLVEDNKADI---RLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYANASRPDLILL-XLNLPKK----DGREV 73 (140)
T ss_dssp CCEEEEECCCHHHH---HHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGGSCCCCSEEEE-CSSCSSS----CHHHH
T ss_pred CCeEEEEeCCHHHH---HHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccccCCCCcEEEE-ecCCCcc----cHHHH
Confidence 34666555544333 456777888999 665432111112222221 145676555 4332212 33334
Q ss_pred HHHHHC-----CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 102 VDFVDS-----GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 102 ~~Fi~~-----GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.+.+.+ .-.++++++....+..... -+.|+
T Consensus 74 ~~~l~~~~~~~~~pii~ls~~~~~~~~~~~-~~~g~ 108 (140)
T 1k68_A 74 LAEIKSDPTLKRIPVVVLSTSINEDDIFHS-YDLHV 108 (140)
T ss_dssp HHHHHHSTTGGGSCEEEEESCCCHHHHHHH-HHTTC
T ss_pred HHHHHcCcccccccEEEEecCCcHHHHHHH-HHhch
Confidence 444432 2346767666554444433 34453
No 103
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=31.31 E-value=59 Score=30.82 Aligned_cols=36 Identities=11% Similarity=0.191 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEee
Q 014568 28 TDRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKL 63 (422)
Q Consensus 28 ~~~r~LVlld~~~~~----~~~S~f~~~L~~rG~~v~~~~ 63 (422)
+.-|+|||+-.+..+ ..-..|.+.|+++|++|+...
T Consensus 21 ~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 21 QSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp -CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 457999999665432 233468899999999999864
No 104
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.21 E-value=63 Score=25.36 Aligned_cols=91 Identities=19% Similarity=0.157 Sum_probs=44.2
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.+.|+||+=|+...+ ..+...|+..||++.......+.+.+.. ...+|.+| + |..+ +-.-.+.|.+. .
T Consensus 17 ~~~~ilivdd~~~~~---~~l~~~L~~~g~~v~~~~~~~~al~~l~--~~~~dlvi-~-~~~~---g~~~~~~l~~~--~ 84 (137)
T 2pln_A 17 GSMRVLLIEKNSVLG---GEIEKGLNVKGFMADVTESLEDGEYLMD--IRNYDLVM-V-SDKN---ALSFVSRIKEK--H 84 (137)
T ss_dssp TCSEEEEECSCHHHH---HHHHHHHHHTTCEEEEESCHHHHHHHHH--HSCCSEEE-E-CSTT---HHHHHHHHHHH--S
T ss_pred CCCeEEEEeCCHHHH---HHHHHHHHHcCcEEEEeCCHHHHHHHHH--cCCCCEEE-E-cCcc---HHHHHHHHHhc--C
Confidence 345666554544333 3456667778999874311111122222 24578777 2 2111 11123444443 3
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 108 -GHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 108 -GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
.-.++++++....+.... +-+.|
T Consensus 85 ~~~~ii~ls~~~~~~~~~~-~~~~g 108 (137)
T 2pln_A 85 SSIVVLVSSDNPTSEEEVH-AFEQG 108 (137)
T ss_dssp TTSEEEEEESSCCHHHHHH-HHHTT
T ss_pred CCccEEEEeCCCCHHHHHH-HHHcC
Confidence 566777776655444433 33445
No 105
>2pn5_A TEP1R, thioester-containing protein I; FULL-length mature peptide, immune system; HET: NAG; 2.70A {Anopheles gambiae}
Probab=31.11 E-value=98 Score=35.55 Aligned_cols=71 Identities=17% Similarity=0.367 Sum_probs=51.3
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccC-CeEEEEEEeCceE----eeccccCCCceEEEEEecCCc--eeeeEEEE
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSD-DVQVQFYMMSPYV----LKTLSTDQKGHYSAEFKVPDV--YGVFQFKV 364 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~-d~QlEf~mldPy~----R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v 364 (422)
+...||-.|.|.|.+=+-. .+..|-... .+.++ ..||-- |..+.....|.++.+|+||+. -|.|+.++
T Consensus 107 Dr~iYrPGqtV~~r~~~~~---~~~~p~~~~~~v~v~--l~dp~g~~i~~~~~~~~~~G~~~~~f~Lp~~~~~G~y~I~~ 181 (1325)
T 2pn5_A 107 DKPVFKPGDTVNFRVIVLD---TELKPPARVKSVYVT--IRDPQRNVIRKWSTAKLYAGVFESDLQIAPTPMLGVWNISV 181 (1325)
T ss_dssp SCSEECTTCEEEEEEEEEE---TTSSCCSSCCEEEEE--EECTTCCEEEEEEEEECBTTEEEEEEECCSSCCCEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEec---CCccccccCccEEEE--EECCCCCEEEEEecccCCCCeEecceECCCCccccceEEEE
Confidence 4568999999999977653 235676532 34554 469853 333333568999999999997 79999999
Q ss_pred eee
Q 014568 365 EYQ 367 (422)
Q Consensus 365 ~Y~ 367 (422)
.+.
T Consensus 182 ~~~ 184 (1325)
T 2pn5_A 182 EVE 184 (1325)
T ss_dssp EET
T ss_pred EeC
Confidence 885
No 106
>3f5d_A Protein YDEA; unknow protein, PSI-II, nysgrc, structural genomics, protein structure initiative; 2.06A {Bacillus subtilis}
Probab=31.01 E-value=1.3e+02 Score=26.63 Aligned_cols=97 Identities=10% Similarity=0.062 Sum_probs=53.6
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhC-CceEEEeeCCCC-----Ccccc-----ccCccccCEEEEeCCCCCCCCCCccH
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSR-GFQLEFKLADDP-----NIGLQ-----RYGQYLYDALVLFCPSVERFGGSIDV 98 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~r-G~~v~~~~~~d~-----~l~L~-----~~g~~~yd~LVI~~p~~~~~~~~~e~ 98 (422)
+|+++++-+.-+..+.....+.|..+ ||++++.+++.. .+.+. ..-...||.|||-...........-.
T Consensus 4 ~kV~ill~~g~~~~E~~~~~~~l~~~~~~~v~~vs~~~~V~~~~G~~v~~d~~l~~~~~~~D~livpGG~~~~~~~~~l~ 83 (206)
T 3f5d_A 4 KKALFLILDQYADWEGVYLASALNQREDWSVHTVSLDPIVSSIGGFKTSVDYIIGLEPANFNLLVMIGGDSWSNDNKKLL 83 (206)
T ss_dssp EEEEEECCSSBCTTTSHHHHHHHHTSTTEEEEEEESSSEEEBTTSCEEECSEETTSSCSCCSEEEECCBSCCCCCCHHHH
T ss_pred cEEEEEEcCCCcHHHHHHHHHHHhccCCeEEEEEECCCCEEecCCcEEecCcChhhCCcCCCEEEEcCCCChhhcCHHHH
Confidence 46777775544555666788889888 999998876643 11111 11123789988855432211111122
Q ss_pred HHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 99 ASIVDFVDSGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 99 ~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
+-|+++.++|.-|. +...+ - .+|.+.|+
T Consensus 84 ~~l~~~~~~gk~ia-aiC~G----~-~~La~aGL 111 (206)
T 3f5d_A 84 HFVKTAFQKNIPIA-AICGA----V-DFLAKNGL 111 (206)
T ss_dssp HHHHHHHHTTCCEE-EETHH----H-HHHHHTTT
T ss_pred HHHHHHHHcCCEEE-EECHH----H-HHHHHcCC
Confidence 44556666666444 32221 1 46667774
No 107
>1gpw_B Amidotransferase HISH; lyase/transferase, complex (lyase/transferase), histidine biosynthesis, glutaminase, glutamine amidotransferase; 2.4A {Thermotoga maritima} SCOP: c.23.16.1 PDB: 1k9v_F 1kxj_A 2wjz_B
Probab=29.72 E-value=1.3e+02 Score=26.06 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=40.0
Q ss_pred EEEcCcccccchhHHHHHHHhCC-----ceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC-------ccHHHH
Q 014568 34 VLVDDFAIKSSHSLYFGSLTSRG-----FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS-------IDVASI 101 (422)
Q Consensus 34 Vlld~~~~~~~~S~f~~~L~~rG-----~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~-------~e~~~L 101 (422)
+|+|-. ...+..|.+.|+..| .++..... ++ . ..+|.|||-.+ .. .+.. ...+.|
T Consensus 4 ~iid~~--~g~~~s~~~~l~~~G~~~~~~~~~~~~~-~~-------~-~~~dglilpG~-g~-~~~~~~~l~~~~~~~~i 70 (201)
T 1gpw_B 4 GIISVG--PGNIMNLYRGVKRASENFEDVSIELVES-PR-------N-DLYDLLFIPGV-GH-FGEGMRRLRENDLIDFV 70 (201)
T ss_dssp EEECCS--SSCCHHHHHHHHHHSTTBSSCEEEEECS-CC-------S-SCCSEEEECCC-SC-SHHHHHHHHHTTCHHHH
T ss_pred EEEecC--CchHHHHHHHHHHcCCCCCceEEEEECC-Cc-------c-cCCCEEEECCC-Cc-HHHHHHHHHhhCHHHHH
Confidence 444632 234467888999999 88876532 11 2 67899988333 22 2111 145777
Q ss_pred HHHHHCCCcEE
Q 014568 102 VDFVDSGHDLI 112 (422)
Q Consensus 102 ~~Fi~~GGNlL 112 (422)
++++++|.-||
T Consensus 71 ~~~~~~~~Pil 81 (201)
T 1gpw_B 71 RKHVEDERYVV 81 (201)
T ss_dssp HHHHHTTCEEE
T ss_pred HHHHHcCCeEE
Confidence 88888876666
No 108
>2d7m_A Filamin-C; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=29.42 E-value=80 Score=25.29 Aligned_cols=61 Identities=13% Similarity=0.305 Sum_probs=39.0
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+.+...+|.|+-..- | .+.++++ +.+|- +...++..++|+|.++|+.+. -|.|+..|.|.-
T Consensus 27 ~~~~~~~F~V~~~da--G------~~~l~V~--v~~p~g~~~~~~v~d~~dGty~v~Y~p~~-~G~y~i~V~~~g 90 (115)
T 2d7m_A 27 PASLPVEFTIDARDA--G------EGLLTVQ--ILDPEGKPKKANIRDNGDGTYTVSYLPDM-SGRYTITIKYGG 90 (115)
T ss_dssp ESSSCEEEEEEESSS--C------SSCEEEE--EECTTSCBCCEEEEECSSSCEEEEECCCS-CEEEEEEEEESS
T ss_pred ccCCcEEEEEEECCC--C------CCEEEEE--EECCCCCeeeeEEEECCCCEEEEEEEeCC-CceEEEEEEECC
Confidence 456677777776532 1 1334443 44553 333444457899999997555 599999999964
No 109
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=29.03 E-value=1.8e+02 Score=22.47 Aligned_cols=94 Identities=15% Similarity=0.100 Sum_probs=43.4
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCC-ceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG-~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G 108 (422)
.|+|++=|+...+ ..+...|++.| |++.......+.+.+. ....+|.+|+ ........+-.-.+.|++.- ..
T Consensus 15 ~~ilivdd~~~~~---~~l~~~L~~~g~~~v~~~~~~~~a~~~l--~~~~~dlvi~-D~~l~~~~g~~~~~~l~~~~-~~ 87 (135)
T 3snk_A 15 KQVALFSSDPNFK---RDVATRLDALAIYDVRVSETDDFLKGPP--ADTRPGIVIL-DLGGGDLLGKPGIVEARALW-AT 87 (135)
T ss_dssp EEEEEECSCHHHH---HHHHHHHHHTSSEEEEEECGGGGGGCCC--TTCCCSEEEE-EEETTGGGGSTTHHHHHGGG-TT
T ss_pred cEEEEEcCCHHHH---HHHHHHHhhcCCeEEEEeccHHHHHHHH--hccCCCEEEE-eCCCCCchHHHHHHHHHhhC-CC
Confidence 3444444443333 35666778889 9988532222222322 3455776555 32222122211233444321 24
Q ss_pred CcEEEEeCCCCcHHHHHHHHHcC
Q 014568 109 HDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 109 GNlLi~~~~~~~~~l~~ll~elG 131 (422)
-.++++++....+.... +-+.|
T Consensus 88 ~~ii~~s~~~~~~~~~~-~~~~g 109 (135)
T 3snk_A 88 VPLIAVSDELTSEQTRV-LVRMN 109 (135)
T ss_dssp CCEEEEESCCCHHHHHH-HHHTT
T ss_pred CcEEEEeCCCCHHHHHH-HHHcC
Confidence 45666666555443333 33444
No 110
>2e9j_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.98 E-value=38 Score=27.55 Aligned_cols=61 Identities=15% Similarity=0.304 Sum_probs=38.5
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---EeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy---~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+++...+|.|+-..- | .++++.+ +.+|- ++..++..++|+|.++|+ |+.-|.|+..|.|..
T Consensus 37 ~~g~~~~F~V~~~da--G------~~~l~v~--v~~p~g~~~~~~v~d~~dGty~v~Y~-p~~~G~y~i~V~~~g 100 (119)
T 2e9j_A 37 PASLPVDFAIDARDA--G------EGLLAVQ--ITDQEGKPKRAIVHDNKDGTYAVTYI-PDKTGRYMIGVTYGG 100 (119)
T ss_dssp ETTSCEEEEEEESSC--C------CCCEECC--EECTTCCCCCEEEEECCSSEEEEEEC-CCSCSEEEECCEESS
T ss_pred ecCCcEEEEEEECCC--C------CCeEEEE--EECCCCCEEEEEEEECCCCEEEEEEE-eCCCEEEEEEEEECC
Confidence 456666666665431 1 1333333 33553 233444467899999999 566999999999864
No 111
>1o1y_A Conserved hypothetical protein TM1158; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG; 1.70A {Thermotoga maritima} SCOP: c.23.16.1
Probab=28.76 E-value=1.7e+02 Score=26.53 Aligned_cols=94 Identities=10% Similarity=0.048 Sum_probs=54.0
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC------ccHHHHH
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS------IDVASIV 102 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~------~e~~~L~ 102 (422)
.-|+||+-....+ ....+.+.|+..|.++.....++. ......-..+|.|||-......+... .+.+.|+
T Consensus 12 ~~~~~~i~~~~~~--~~~~i~~~l~~~G~~v~v~~~~~~--~~~~~~l~~~Dglil~GG~~~~~~~~~~~~l~~~~~~i~ 87 (239)
T 1o1y_A 12 HVRVLAIRHVEIE--DLGMMEDIFREKNWSFDYLDTPKG--EKLERPLEEYSLVVLLGGYMGAYEEEKYPFLKYEFQLIE 87 (239)
T ss_dssp CCEEEEECSSTTS--SCTHHHHHHHHTTCEEEEECGGGT--CCCSSCGGGCSEEEECCCSCCTTCTTTCTHHHHHHHHHH
T ss_pred eeEEEEEECCCCC--CchHHHHHHHhCCCcEEEeCCcCc--cccccchhcCCEEEECCCCccccCCccChhHHHHHHHHH
Confidence 4578888654433 334688889999999985433321 11112225679998877443323211 2346677
Q ss_pred HHHHCCCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 103 DFVDSGHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 103 ~Fi~~GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
+++++|.-+|=. =-+..-++..+|
T Consensus 88 ~~~~~~~PiLGI-----C~G~QlL~~alG 111 (239)
T 1o1y_A 88 EILKKEIPFLGI-----CLGSQMLAKVLG 111 (239)
T ss_dssp HHHHHTCCEEEE-----THHHHHHHHHTT
T ss_pred HHHHCCCCEEEE-----chhHHHHHHHcC
Confidence 777877666621 124556666665
No 112
>3tem_A Ribosyldihydronicotinamide dehydrogenase [quinone; oxidoreductase-oxidoreductase inhibitor complex; HET: FAD 6A1 IMD; 1.45A {Homo sapiens} SCOP: c.23.5.3 PDB: 3te7_A* 3tzb_A* 3fw1_A* 2qwx_A* 1zx1_A* 3g5m_A* 3gam_A* 3ovm_A* 3owh_A* 3owx_A* 3ox1_A* 3ox2_A* 3ox3_A* 1sg0_A* 1qr2_A* 1xi2_A* 2qmy_A* 2qmz_A* 2qr2_A* 2qx4_A* ...
Probab=28.76 E-value=1.3e+02 Score=27.13 Aligned_cols=38 Identities=16% Similarity=0.200 Sum_probs=26.4
Q ss_pred CCeEEEEEcCcccc----cchhHHHHHHHhCCceEEEeeCCC
Q 014568 29 DRRVLVLVDDFAIK----SSHSLYFGSLTSRGFQLEFKLADD 66 (422)
Q Consensus 29 ~~r~LVlld~~~~~----~~~S~f~~~L~~rG~~v~~~~~~d 66 (422)
+.|+|+|.-+.... ..-..+.+.|+++|++++.....+
T Consensus 1 ~mkiLiI~gspr~~S~t~~l~~~~~~~l~~~g~ev~~~dL~~ 42 (228)
T 3tem_A 1 GKKVLIVYAHQEPKSFNGSLKNVAVDELSRQGCTVTVSDLYA 42 (228)
T ss_dssp CCEEEEEECCSCTTSHHHHHHHHHHHHHHHHTCEEEEEETTT
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHHHHCCCEEEEEEhhh
Confidence 46888888665432 233358888999999999875544
No 113
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=28.01 E-value=75 Score=27.56 Aligned_cols=31 Identities=32% Similarity=0.499 Sum_probs=18.6
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCc-eEEEe
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGF-QLEFK 62 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~-~v~~~ 62 (422)
+.|+||+=|+...+. .+...|++.|| ++...
T Consensus 61 ~~~ILiVdDd~~~~~---~l~~~L~~~g~~~v~~a 92 (206)
T 3mm4_A 61 GKRVLVVDDNFISRK---VATGKLKKMGVSEVEQC 92 (206)
T ss_dssp TCEEEEECSCHHHHH---HHHHHHHHTTCSEEEEE
T ss_pred CCEEEEEeCCHHHHH---HHHHHHHHcCCCeeeee
Confidence 446655555544343 45666778898 77654
No 114
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=27.84 E-value=1.8e+02 Score=22.59 Aligned_cols=96 Identities=11% Similarity=0.083 Sum_probs=46.8
Q ss_pred CCCCeEEEEEcCcccccchhHHHHHHHhCCc--eEEEeeCCCCCccccccC------c--cccCEEEEeCCCCCCCCCCc
Q 014568 27 PTDRRVLVLVDDFAIKSSHSLYFGSLTSRGF--QLEFKLADDPNIGLQRYG------Q--YLYDALVLFCPSVERFGGSI 96 (422)
Q Consensus 27 ~~~~r~LVlld~~~~~~~~S~f~~~L~~rG~--~v~~~~~~d~~l~L~~~g------~--~~yd~LVI~~p~~~~~~~~~ 96 (422)
..+.|+|++=|+...+ ..+...|+..|+ ++......++.+.+.... . ..+|.+|+ ..... ..
T Consensus 4 ~~~~~iLivdd~~~~~---~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~~~~~~~~~~dlvi~-D~~l~----~~ 75 (149)
T 1k66_A 4 NATQPLLVVEDSDEDF---STFQRLLQREGVVNPIYRCITGDQALDFLYQTGSYCNPDIAPRPAVILL-DLNLP----GT 75 (149)
T ss_dssp CTTSCEEEECCCHHHH---HHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSSSCGGGCCCCSEEEE-CSCCS----SS
T ss_pred CCCccEEEEECCHHHH---HHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccccCcccCCCCcEEEE-ECCCC----CC
Confidence 3456666655544333 356667888898 665432111212322221 0 45676555 44322 22
Q ss_pred cHHHHHHHHHCC-----CcEEEEeCCCCcHHHHHHHHHcC
Q 014568 97 DVASIVDFVDSG-----HDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 97 e~~~L~~Fi~~G-----GNlLi~~~~~~~~~l~~ll~elG 131 (422)
+--.+.+.+.+- -.++++++....+..... .+.|
T Consensus 76 ~g~~~~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~-~~~g 114 (149)
T 1k66_A 76 DGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEIC-YSYS 114 (149)
T ss_dssp CHHHHHHHHTTSTTGGGSCEEEEESCCCHHHHHHH-HHTT
T ss_pred CHHHHHHHHHhCcccCCCeEEEEeCCCCHHHHHHH-HHCC
Confidence 444555555543 346666666554444433 3455
No 115
>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A
Probab=27.71 E-value=66 Score=26.94 Aligned_cols=106 Identities=10% Similarity=-0.010 Sum_probs=58.1
Q ss_pred CCCCCeEEEEEcCcccccchhHHHHHHHhCC-ceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCC--ccHHHHH
Q 014568 26 NPTDRRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGS--IDVASIV 102 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~~~~~S~f~~~L~~rG-~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~--~e~~~L~ 102 (422)
..+|+++|.+-++...-+......+..+++- -.+++...+-.++.+.......||.++.... ...+..+ .-.+.+.
T Consensus 10 ~~~g~~vL~~~~g~v~vD~s~~ml~~a~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~-l~~~~~~~~~~l~~~~ 88 (176)
T 2ld4_A 10 ISAGQFVAVVWDKSSPVEALKGLVDKLQALTGNEGRVSVENIKQLLQSAHKESSFDIILSGLV-PGSTTLHSAEILAEIA 88 (176)
T ss_dssp CCTTSEEEEEECTTSCHHHHHHHHHHHHHHTTTTSEEEEEEGGGGGGGCCCSSCEEEEEECCS-TTCCCCCCHHHHHHHH
T ss_pred CCCCCEEEEecCCceeeeCCHHHHHHHHHhcccCcEEEEechhcCccccCCCCCEeEEEECCh-hhhcccCHHHHHHHHH
Confidence 4568999999887644333344555555441 1255543222222221124456898776433 2223112 2346677
Q ss_pred HHHHCCCcEEEEeCC----------CCcHHHHHHHHHcCc
Q 014568 103 DFVDSGHDLIVAADS----------NASDLIREVATECGV 132 (422)
Q Consensus 103 ~Fi~~GGNlLi~~~~----------~~~~~l~~ll~elGI 132 (422)
+-+..||.+++.... ...+.+...+++.|.
T Consensus 89 r~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf 128 (176)
T 2ld4_A 89 RILRPGGCLFLKEPVETAVDNNSKVKTASKLCSALTLSGL 128 (176)
T ss_dssp HHEEEEEEEEEEEEEESSSCSSSSSCCHHHHHHHHHHTTC
T ss_pred HHCCCCEEEEEEcccccccccccccCCHHHHHHHHHHCCC
Confidence 778889988874321 013567788888887
No 116
>3v0r_A Major allergen ALT A 1; beta-barrel, cell WALL, unknown function; HET: 0FU 8AC; 1.90A {Alternaria alternata}
Probab=27.69 E-value=1e+02 Score=26.09 Aligned_cols=83 Identities=12% Similarity=0.133 Sum_probs=57.3
Q ss_pred cccCceEEEeeeEEeecCCCC-CCcceEeCC----ceEEE--EEEEEEeCCeeeecccCC-eEEEEEEeCceEeecccc-
Q 014568 271 FHERGHLKAVNVRHHKVGESD-EPAIYRIND----DLEYS--VEIYEWSGTSWEPYVSDD-VQVQFYMMSPYVLKTLST- 341 (422)
Q Consensus 271 f~e~gvlr~~~~~H~~~~~~~-~~~~Y~i~d----~v~y~--i~i~e~~~~~w~P~~~~d-~QlEf~mldPy~R~~l~~- 341 (422)
.|.+-|+||+++.-+|.+++. +...+.|+- .+.++ ..=.++.+++|-|.-.+. +++-|.. | ...+.|++
T Consensus 10 ~~gd~vwkIs~F~~RKpeGty~nsvsFnI~aTn~gtldftCsa~ad~~eD~~~Y~CGens~~sFsf~s-d-~~gLll~~~ 87 (133)
T 3v0r_A 10 TEGDYVWKISEFYGRKPEGTYYNSLGFNIKATNGGTLDFTCSAQADKLEDHKWYSCGENSFMDFSFDS-D-RSGLLLKQK 87 (133)
T ss_dssp CCCTTEEEEEEEEEEETTSSSCSEEEEEEEESSSCCCEEEEEEECSSCCTTCCEESSSSCSCEEEEEG-G-GTEEEEEEE
T ss_pred cCCceEEEeeeeeeEcCCCCceeeEEEEEEecCCCceeeeEeccCCCCccCceEECCCCceEEEEEEc-c-cccEEEEee
Confidence 356779999999999998775 555566643 33333 333456778999997777 8999887 2 22355554
Q ss_pred -CCCceEEEEEecCC
Q 014568 342 -DQKGHYSAEFKVPD 355 (422)
Q Consensus 342 -~~~~~y~~~f~~PD 355 (422)
...-.|..+-.||+
T Consensus 88 ~s~~~~~~Gt~~iP~ 102 (133)
T 3v0r_A 88 VSDDITYVATATLPN 102 (133)
T ss_dssp CSSSCEEEEEEECCE
T ss_pred cCCCeeEEEeeccch
Confidence 34556888888886
No 117
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=26.96 E-value=1e+02 Score=24.90 Aligned_cols=93 Identities=16% Similarity=0.173 Sum_probs=43.1
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCC-CCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH---
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLAD-DPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD--- 106 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~-d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~--- 106 (422)
|+||+=|+...+ ..+...|++.||++.....+ ++.+.+.....+.+|.+|+ ....... +--.+.+.+.
T Consensus 38 ~Ilivdd~~~~~---~~l~~~L~~~g~~v~~~~~~~~~al~~l~~~~~~~dliil-D~~l~~~----~g~~~~~~lr~~~ 109 (157)
T 3hzh_A 38 NVLIVDDSVFTV---KQLTQIFTSEGFNIIDTAADGEEAVIKYKNHYPNIDIVTL-XITMPKM----DGITCLSNIMEFD 109 (157)
T ss_dssp EEEEECSCHHHH---HHHHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGCCEEEE-CSSCSSS----CHHHHHHHHHHHC
T ss_pred EEEEEeCCHHHH---HHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCCCCCEEEE-eccCCCc----cHHHHHHHHHhhC
Confidence 454444443333 35666778889998622111 1112233332236776554 4433322 2223333332
Q ss_pred CCCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 107 SGHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 107 ~GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
..-.++++++....+.+.. +.+.|+
T Consensus 110 ~~~~ii~ls~~~~~~~~~~-~~~~g~ 134 (157)
T 3hzh_A 110 KNARVIMISALGKEQLVKD-CLIKGA 134 (157)
T ss_dssp TTCCEEEEESCCCHHHHHH-HHHTTC
T ss_pred CCCcEEEEeccCcHHHHHH-HHHcCC
Confidence 3445776666655444433 445553
No 118
>2ee9_A Filamin-B; beta-sandwich, immunoglobulin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=26.93 E-value=87 Score=24.70 Aligned_cols=46 Identities=13% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 322 DDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 322 ~d~QlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
.|+..+.++-+ .-.+..++..++|+|.++|+ |..-|.|+..|.|.-
T Consensus 30 ~~ltv~V~~PsG~~~~~~v~d~~dGtY~v~yt-P~e~G~h~v~V~~~G 76 (95)
T 2ee9_A 30 GEITGEVHMPSGKTATPEIVDNKDGTVTVRYA-PTEVGLHEMHIKYMG 76 (95)
T ss_dssp TSEEEEEECTTSCEECCEEEECSSSCEEEECC-CCSSEEEEEEEEESS
T ss_pred CCEEEEEECCCCCccccEEEeCCCCeEEEEEE-ecCCEeEEEEEEECC
Confidence 55666555544 12333344467899999995 888999999999975
No 119
>3klb_A Putative flavoprotein; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.75A {Bacteroides fragilis nctc 9343}
Probab=26.47 E-value=2.1e+02 Score=23.94 Aligned_cols=56 Identities=16% Similarity=0.163 Sum_probs=34.6
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC----CCcEEEEeCC---CCcHHHHHHHHHc-Cceec
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS----GHDLIVAADS---NASDLIREVATEC-GVDFD 135 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~----GGNlLi~~~~---~~~~~l~~ll~el-GI~~~ 135 (422)
-..||.|||-.|.-. + . -+..+.+|+++ |..+.+.+.. +....++.+-+.+ |..+.
T Consensus 76 l~~yd~iilG~P~~~--g-~-~~~~~~~fl~~~~l~gk~v~~f~t~g~~~~g~~~~~l~~~l~~~~~~ 139 (162)
T 3klb_A 76 PEKYEVLFVGFPVWW--Y-I-APTIINTFLESYDFAGKIVVPFATSGGSGIGNCEKNLHKAYPDIVWK 139 (162)
T ss_dssp GGGCSEEEEEEECBT--T-B-CCHHHHHHHHTSCCTTCEEEEEEECSSCCSHHHHHHHHHHCTTSEEC
T ss_pred hhhCCEEEEEccccc--C-C-CCHHHHHHHHhcCCCCCEEEEEEEeCCCCccHHHHHHHHHcCCCEee
Confidence 467899999999764 2 2 35678899986 5666655432 2235555555555 33343
No 120
>2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae}
Probab=26.43 E-value=1.8e+02 Score=24.15 Aligned_cols=83 Identities=16% Similarity=0.113 Sum_probs=52.2
Q ss_pred HHHHHHHhCCceEEEeeCCC--CCcc-ccccC-----ccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC-CcEEEEeCC
Q 014568 47 LYFGSLTSRGFQLEFKLADD--PNIG-LQRYG-----QYLYDALVLFCPSVERFGGSIDVASIVDFVDSG-HDLIVAADS 117 (422)
Q Consensus 47 ~f~~~L~~rG~~v~~~~~~d--~~l~-L~~~g-----~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G-GNlLi~~~~ 117 (422)
...+.|.+.||+|-...|+. +.+. +.-+. ....|.++|+-|. + .-.+.+.+-++.| +.+++ -..
T Consensus 31 ~~~~~L~~~G~~v~~vnp~~~g~~i~G~~~~~sl~el~~~~Dlvii~vp~-~-----~v~~v~~~~~~~g~~~i~i-~~~ 103 (145)
T 2duw_A 31 RVMKYLLDQGYHVIPVSPKVAGKTLLGQQGYATLADVPEKVDMVDVFRNS-E-----AAWGVAQEAIAIGAKTLWL-QLG 103 (145)
T ss_dssp HHHHHHHHHTCCEEEECSSSTTSEETTEECCSSTTTCSSCCSEEECCSCS-T-----HHHHHHHHHHHHTCCEEEC-CTT
T ss_pred HHHHHHHHCCCEEEEeCCcccccccCCeeccCCHHHcCCCCCEEEEEeCH-H-----HHHHHHHHHHHcCCCEEEE-cCC
Confidence 46677889999987776665 3221 11111 1345888887773 2 1345555666667 44444 344
Q ss_pred CCcHHHHHHHHHcCceecC
Q 014568 118 NASDLIREVATECGVDFDE 136 (422)
Q Consensus 118 ~~~~~l~~ll~elGI~~~~ 136 (422)
...+.+...+++.|+.+-.
T Consensus 104 ~~~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 104 VINEQAAVLAREAGLSVVM 122 (145)
T ss_dssp CCCHHHHHHHHTTTCEEEC
T ss_pred hHHHHHHHHHHHcCCEEEc
Confidence 4577899999999999883
No 121
>3gra_A Transcriptional regulator, ARAC family; transcription regulator, PSI-II, structural genomics structure initiative; 2.30A {Pseudomonas putida}
Probab=26.29 E-value=1.6e+02 Score=25.87 Aligned_cols=85 Identities=15% Similarity=0.044 Sum_probs=45.1
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhC------CceEEEeeCCCCCc------c-----ccccCccccCEEEEeCCCCCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSR------GFQLEFKLADDPNI------G-----LQRYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~r------G~~v~~~~~~d~~l------~-----L~~~g~~~yd~LVI~~p~~~~ 91 (422)
..|+.+++-+.-+..+.....+-|+.. +|++++.+++...+ . +..-....||.|||-......
T Consensus 5 ~~~v~ill~~g~~~~e~~~~~dvl~~a~~~~~~~~~v~~vs~~~~~v~~~~G~~i~~d~l~~~~~~~~D~livpGG~~~~ 84 (202)
T 3gra_A 5 PYRVDFILLEHFSMASFTVAMDVLVTANLLRADSFQFTPLSLDGDRVLSDLGLELVATELSAAALKELDLLVVCGGLRTP 84 (202)
T ss_dssp CEEEEEEECTTBCHHHHHHHHHHHHHHHHHSTTSEEEEEEESSSSEEEBTTSCEEECEECCSGGGTTCSEEEEECCTTCC
T ss_pred cEEEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCCcEEEEEECCCCceEcCCCCEEECCCcccccCCCCCEEEEeCCCchh
Confidence 467777775554555555555566543 49999887664321 1 111114678999986653321
Q ss_pred CCCCccHHHHHHHHHCCCcEEEE
Q 014568 92 FGGSIDVASIVDFVDSGHDLIVA 114 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~GGNlLi~ 114 (422)
.....-.+-|+++.++|. .+.+
T Consensus 85 ~~~~~l~~~l~~~~~~g~-~iaa 106 (202)
T 3gra_A 85 LKYPELDRLLNDCAAHGM-ALGG 106 (202)
T ss_dssp SCCTTHHHHHHHHHHHTC-EEEE
T ss_pred hccHHHHHHHHHHHhhCC-EEEE
Confidence 111112344555555554 4433
No 122
>3u7r_A NADPH-dependent FMN reductase; alpha/beta twisted open-sheet, lavoprotein, quinone reductas oxidoreductase; HET: MSE FNR 2PE; 1.40A {Paracoccus denitrificans}
Probab=25.66 E-value=3.4e+02 Score=23.72 Aligned_cols=105 Identities=12% Similarity=0.127 Sum_probs=60.4
Q ss_pred CeEEEEEcCcccc---cchhHHHHHHHhCCceEEEeeCCCCCcccccc---------------CccccCEEEEeCCCCCC
Q 014568 30 RRVLVLVDDFAIK---SSHSLYFGSLTSRGFQLEFKLADDPNIGLQRY---------------GQYLYDALVLFCPSVER 91 (422)
Q Consensus 30 ~r~LVlld~~~~~---~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~---------------g~~~yd~LVI~~p~~~~ 91 (422)
++++|+.-+.... ....++...+-..|.+++.....| +.++.. -....|.+||..|--..
T Consensus 3 k~I~vi~GS~R~~S~~~~la~~~~~~~~~~~~~~~idl~d--LP~~~~d~~~~~p~~~~~l~~~i~~aD~~ii~tPeYn~ 80 (190)
T 3u7r_A 3 KTVAVMVGSLRKDSLNHKLMKVLQKLAEGRLEFHLLHIGD--LPHYNDDLWADAPESVLRLKDRIEHSDAVLAITPEYNR 80 (190)
T ss_dssp EEEEEEESCCSTTCHHHHHHHHHHHHHTTTEEEEECCGGG--SCCCCGGGGGGCCHHHHHHHHHHHTSSEEEEECCCBTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHhccCCCEEEEEeccc--CCCCCCCcccCCCHHHHHHHHHHHhCCcEEEechhhcc
Confidence 3455666443221 223345566667788988764433 223211 12557999999996541
Q ss_pred CCCCccHHHHHHHHHC--------CCcEEEE-eCCCC------cHHHHHHHHHcCceecCC
Q 014568 92 FGGSIDVASIVDFVDS--------GHDLIVA-ADSNA------SDLIREVATECGVDFDED 137 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~--------GGNlLi~-~~~~~------~~~l~~ll~elGI~~~~~ 137 (422)
+=.--.+.++|++.. |.-++++ .+++. ...+|.++..+|..+.+.
T Consensus 81 -s~pg~LKn~iDwlsr~~~~~~~~gKpv~~v~~S~G~~Gg~~a~~~Lr~vl~~lg~~v~~~ 140 (190)
T 3u7r_A 81 -SYPGMIKNAIDWATRPYGQNSWKGKPAAVIGTSPGVIGAALAQARLKNDLLHVGTVMMSM 140 (190)
T ss_dssp -BCCHHHHHHHHHHHCSTTCCTTTTCEEEEEEEESSTTTTHHHHHHHHHHHHTTTCEECCC
T ss_pred -cCCHHHHHHHHHhcccccCCccCCCEEEEEEeCCchhhHHHHHHHHHHHHHHcCCEEccC
Confidence 112244667777642 3334444 33322 467999999999988875
No 123
>2dia_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=25.48 E-value=1.6e+02 Score=23.36 Aligned_cols=63 Identities=13% Similarity=0.212 Sum_probs=38.1
Q ss_pred EeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeC-ceEeeccccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 297 RINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMS-PYVLKTLSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 297 ~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mld-Py~R~~l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
+++...+|+|+-..- -.++++++..-=+ .-+...++..++|+|.++|+. ..-|.|+..|.|.-
T Consensus 25 ~~g~~~~F~V~~~da--------G~~~l~v~i~~~~g~~~~~~v~d~~dGty~v~Y~p-~~~G~y~i~V~~~g 88 (113)
T 2dia_A 25 KVGEAGLLSVDCSEA--------GPGALGLEAVSDSGTKAEVSIQNNKDGTYAVTYVP-LTAGMYTLTMKYGG 88 (113)
T ss_dssp ETTCCCCEEEEESSC--------CSCCEEEEEEETTTEECEEEEEECTTSEEEEEEEC-SSCEEEEEEEEETT
T ss_pred ecCCCEEEEEEECCC--------CCccEEEEEECCCCCEeeEEEEECCCCEEEEEEEe-CCCccEEEEEEECC
Confidence 455555666665421 1144555543212 123344455678999999975 56799999999864
No 124
>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*
Probab=25.05 E-value=2.5e+02 Score=29.46 Aligned_cols=109 Identities=10% Similarity=0.100 Sum_probs=65.4
Q ss_pred CCCeEEEEEcCc-ccccch-hHHHHHHHhCCceEEEeeCCCCCcc-ccccCccccCEEEEeCCCC-CCCCCCccHHHHHH
Q 014568 28 TDRRVLVLVDDF-AIKSSH-SLYFGSLTSRGFQLEFKLADDPNIG-LQRYGQYLYDALVLFCPSV-ERFGGSIDVASIVD 103 (422)
Q Consensus 28 ~~~r~LVlld~~-~~~~~~-S~f~~~L~~rG~~v~~~~~~d~~l~-L~~~g~~~yd~LVI~~p~~-~~~~~~~e~~~L~~ 103 (422)
.+.+++|+|.+. +..+.. ..+.+.|+++|+++.....++-+.. +.......++.+|+..|+. ..-. ..+.+.+.+
T Consensus 17 ~~~~i~I~YgS~tGnte~~A~~la~~l~~~g~~~~v~~~~~~~~~~l~~~~~~~~~~vi~~~sT~G~G~~-pd~~~~F~~ 95 (618)
T 3qe2_A 17 TGRNIIVFYGSQTGTAEEFANRLSKDAHRYGMRGMSADPEEYDLADLSSLPEIDNALVVFCMATYGEGDP-TDNAQDFYD 95 (618)
T ss_dssp HTCSEEEEEECSSSHHHHHHHHHHHHGGGGTCCEEEECGGGSCGGGGGGGGGSTTCEEEEEEECBGGGBC-CGGGHHHHH
T ss_pred cCCeEEEEEECChhHHHHHHHHHHHHHHhCCCceEEechHHcCHHHhhhcccccCcEEEEEcCccCCCCC-CHHHHHHHH
Confidence 357899999775 332333 3456678889999887544443322 2221112578888887765 3221 236788888
Q ss_pred HHHC------CCcEEEEe--CCCC------cHHHHHHHHHcCceecCC
Q 014568 104 FVDS------GHDLIVAA--DSNA------SDLIREVATECGVDFDED 137 (422)
Q Consensus 104 Fi~~------GGNlLi~~--~~~~------~~~l~~ll~elGI~~~~~ 137 (422)
++.+ |-..-+++ +..- ...+...++++|-..--.
T Consensus 96 ~L~~~~~~l~~~~~avfGlGd~~Y~~f~~~~k~~d~~L~~lGa~~~~~ 143 (618)
T 3qe2_A 96 WLQETDVDLSGVKFAVFGLGNKTYEHFNAMGKYVDKRLEQLGAQRIFE 143 (618)
T ss_dssp HHHHCCCCCTTCEEEEEEEECTTSSSTTHHHHHHHHHHHHTTCEESSC
T ss_pred HHhhccccccCCEEEEEeCCCCCcHhHhHHHHHHHHHHHhCCCCEeec
Confidence 8875 33333444 2211 467788899999887654
No 125
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=25.00 E-value=1.3e+02 Score=22.92 Aligned_cols=92 Identities=12% Similarity=0.092 Sum_probs=42.3
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH-C-
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-S- 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~-~- 107 (422)
.|+|++=|+...+. .+...|+..||++... .+..-.+.......+| +||++...... +--.+.+-+. .
T Consensus 4 ~~ilivdd~~~~~~---~l~~~l~~~~~~v~~~--~~~~~~~~~~~~~~~d-lvi~D~~l~~~----~g~~~~~~l~~~~ 73 (126)
T 1dbw_A 4 YTVHIVDDEEPVRK---SLAFMLTMNGFAVKMH--QSAEAFLAFAPDVRNG-VLVTDLRMPDM----SGVELLRNLGDLK 73 (126)
T ss_dssp CEEEEEESSHHHHH---HHHHHHHHTTCEEEEE--SCHHHHHHHGGGCCSE-EEEEECCSTTS----CHHHHHHHHHHTT
T ss_pred CEEEEEcCCHHHHH---HHHHHHHhCCcEEEEe--CCHHHHHHHHhcCCCC-EEEEECCCCCC----CHHHHHHHHHhcC
Confidence 46666555544443 3455667789998753 2211112111223345 55555543322 2223333332 2
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 108 -GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 108 -GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.-.++++++....+..... -+.|.
T Consensus 74 ~~~~ii~~s~~~~~~~~~~~-~~~ga 98 (126)
T 1dbw_A 74 INIPSIVITGHGDVPMAVEA-MKAGA 98 (126)
T ss_dssp CCCCEEEEECTTCHHHHHHH-HHTTC
T ss_pred CCCCEEEEECCCCHHHHHHH-HHhCH
Confidence 3456666665554434333 34453
No 126
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=24.75 E-value=72 Score=25.67 Aligned_cols=92 Identities=11% Similarity=0.117 Sum_probs=42.3
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH--
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD-- 106 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~-- 106 (422)
+.|+|++=|+.... ..+...|+..||++... .+..-.+..-....+|.+|+ +...... +.-.+.+-+.
T Consensus 3 ~~~ILivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dliil-d~~l~~~----~g~~~~~~l~~~ 72 (155)
T 1qkk_A 3 APSVFLIDDDRDLR---KAMQQTLELAGFTVSSF--ASATEALAGLSADFAGIVIS-DIRMPGM----DGLALFRKILAL 72 (155)
T ss_dssp -CEEEEECSCHHHH---HHHHHHHHHTTCEEEEE--SCHHHHHHTCCTTCCSEEEE-ESCCSSS----CHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHH---HHHHHHHHHcCcEEEEE--CCHHHHHHHHHhCCCCEEEE-eCCCCCC----CHHHHHHHHHhh
Confidence 34555554443333 35666777889998753 22111122222244676555 4433222 2223333332
Q ss_pred -CCCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 107 -SGHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 107 -~GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
..-.++++++....+..... -+.|
T Consensus 73 ~~~~pii~ls~~~~~~~~~~~-~~~g 97 (155)
T 1qkk_A 73 DPDLPMILVTGHGDIPMAVQA-IQDG 97 (155)
T ss_dssp CTTSCEEEEECGGGHHHHHHH-HHTT
T ss_pred CCCCCEEEEECCCChHHHHHH-HhcC
Confidence 24457766665444333333 3455
No 127
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=24.59 E-value=92 Score=24.48 Aligned_cols=92 Identities=13% Similarity=0.070 Sum_probs=42.9
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHH---C
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVD---S 107 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~---~ 107 (422)
|+|++=|+...+ ..+...|++.||++......++.+.+.......+|.+|+ ....... +.-.+.+.+. .
T Consensus 5 ~ilivdd~~~~~---~~l~~~l~~~g~~v~~~~~~~~a~~~~~~~~~~~dlvi~-d~~l~~~----~g~~~~~~l~~~~~ 76 (143)
T 3jte_A 5 KILVIDDESTIL---QNIKFLLEIDGNEVLTASSSTEGLRIFTENCNSIDVVIT-DMKMPKL----SGMDILREIKKITP 76 (143)
T ss_dssp EEEEECSCHHHH---HHHHHHHHHTTCEEEEESSHHHHHHHHHHTTTTCCEEEE-ESCCSSS----CHHHHHHHHHHHCT
T ss_pred EEEEEcCCHHHH---HHHHHHHHhCCceEEEeCCHHHHHHHHHhCCCCCCEEEE-eCCCCCC----cHHHHHHHHHHhCC
Confidence 444444443323 356667778899987532112222223322456776555 4332212 2223333332 2
Q ss_pred CCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 108 GHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 108 GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
.-.++++++....+.... +-+.|
T Consensus 77 ~~~ii~ls~~~~~~~~~~-~~~~g 99 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAIL-AMKEG 99 (143)
T ss_dssp TCEEEEEECTTCHHHHHH-HHHTT
T ss_pred CCeEEEEECCCCHHHHHH-HHHhC
Confidence 345666666554443333 33455
No 128
>2e0n_A Precorrin-2 C20-methyltransferase; cobalt-factor II, tetrapyrrole, S-adenosylmethi transferase; HET: SAH; 2.00A {Chlorobaculum tepidum} PDB: 2e0k_A*
Probab=23.98 E-value=2.3e+02 Score=25.80 Aligned_cols=96 Identities=15% Similarity=0.150 Sum_probs=57.2
Q ss_pred CCCeEEEEEcC-cccccchhHHHHHHHhCCceEEEeeCCCCCcc--ccccCcccc---CEEEEeCCCCCCCCCCccHHHH
Q 014568 28 TDRRVLVLVDD-FAIKSSHSLYFGSLTSRGFQLEFKLADDPNIG--LQRYGQYLY---DALVLFCPSVERFGGSIDVASI 101 (422)
Q Consensus 28 ~~~r~LVlld~-~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~--L~~~g~~~y---d~LVI~~p~~~~~~~~~e~~~L 101 (422)
.|+++.++..+ +..-...+...+.|.++|++++.. |.=+++. ...-|.+.+ +.+.+++.+ . ..+.|
T Consensus 95 ~g~~Va~l~~GDP~~~~~~~~l~~~l~~~gi~v~vi-PGiSs~~aa~a~~G~pl~~~~~~~~~~~~~-~------~~~~l 166 (259)
T 2e0n_A 95 AGRRVAVVSVGDGGFYSTASAIIERARRDGLDCSMT-PGIPAFIAAGSAAGMPLALQSDSVLVLAQI-D------EIGEL 166 (259)
T ss_dssp TTCEEEEEESBCTTBSCTHHHHHHHHHTTTCCEEEE-CCCCHHHHHHHHTTCCSBCTTCCEEEECSC-S------STHHH
T ss_pred CCCeEEEEeCCCCcccccHHHHHHHHHHCCCCEEEe-CChhHHHHHHHhcCCCCcCCCceEEEEcCC-C------CHHHH
Confidence 35677666644 244455667788899999999875 3333322 335555442 344444332 2 12567
Q ss_pred HHHHHCCCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 102 VDFVDSGHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 102 ~~Fi~~GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
.+.++.++.+.+..++.....+...|.+.|
T Consensus 167 ~~~~~~~~t~vl~~~~~~~~~i~~~L~~~g 196 (259)
T 2e0n_A 167 ERALVTHSTVVVMKLSTVRDELVSFLERYA 196 (259)
T ss_dssp HHHHTTCSEEEECCTTSSGGGHHHHHHHHC
T ss_pred HHHhhcCCEEEEEcccccHHHHHHHHHhCC
Confidence 777877776666666665556666666767
No 129
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=23.81 E-value=2.4e+02 Score=22.53 Aligned_cols=93 Identities=13% Similarity=0.144 Sum_probs=45.5
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCC
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSG 108 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~G 108 (422)
..|+|++=|+...+ ..+.+.|++.||++... .+..-.+..-....+|.+|+ ..... ..+--.+.+.+.+-
T Consensus 7 ~~~ILivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~al~~l~~~~~dlii~-D~~l~----~~~g~~~~~~lr~~ 76 (154)
T 3gt7_A 7 AGEILIVEDSPTQA---EHLKHILEETGYQTEHV--RNGREAVRFLSLTRPDLIIS-DVLMP----EMDGYALCRWLKGQ 76 (154)
T ss_dssp CCEEEEECSCHHHH---HHHHHHHHTTTCEEEEE--SSHHHHHHHHTTCCCSEEEE-ESCCS----SSCHHHHHHHHHHS
T ss_pred CCcEEEEeCCHHHH---HHHHHHHHHCCCEEEEe--CCHHHHHHHHHhCCCCEEEE-eCCCC----CCCHHHHHHHHHhC
Confidence 45666655554333 34666778889998653 22111122223345776555 43322 22334444455432
Q ss_pred -----CcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 109 -----HDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 109 -----GNlLi~~~~~~~~~l~~ll~elGI 132 (422)
--++++++....+.... +-+.|+
T Consensus 77 ~~~~~~pii~~s~~~~~~~~~~-~~~~g~ 104 (154)
T 3gt7_A 77 PDLRTIPVILLTILSDPRDVVR-SLECGA 104 (154)
T ss_dssp TTTTTSCEEEEECCCSHHHHHH-HHHHCC
T ss_pred CCcCCCCEEEEECCCChHHHHH-HHHCCC
Confidence 23666666554443333 334553
No 130
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=23.42 E-value=91 Score=24.41 Aligned_cols=68 Identities=19% Similarity=0.224 Sum_probs=33.6
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|+|++=|+...+ ..+...|++.||++.......+.+.+. ....+|.+|+ +.... ..+--.+.+.+.+
T Consensus 7 ~~iLivdd~~~~~---~~l~~~l~~~g~~v~~~~~~~~a~~~l--~~~~~dlvi~-d~~l~----~~~g~~~~~~l~~ 74 (140)
T 3grc_A 7 PRILICEDDPDIA---RLLNLMLEKGGFDSDMVHSAAQALEQV--ARRPYAAMTV-DLNLP----DQDGVSLIRALRR 74 (140)
T ss_dssp SEEEEECSCHHHH---HHHHHHHHHTTCEEEEECSHHHHHHHH--HHSCCSEEEE-CSCCS----SSCHHHHHHHHHT
T ss_pred CCEEEEcCCHHHH---HHHHHHHHHCCCeEEEECCHHHHHHHH--HhCCCCEEEE-eCCCC----CCCHHHHHHHHHh
Confidence 4555554444333 356667788999986532111112222 2344676554 44333 2344455555654
No 131
>2klu_A T-cell surface glycoprotein CD4; cell membrane, disulfide bond, HOST- virus interaction, immune response, immunoglobulin domain, lipoprotein; NMR {Homo sapiens}
Probab=23.36 E-value=25 Score=26.31 Aligned_cols=27 Identities=15% Similarity=0.203 Sum_probs=19.4
Q ss_pred ccCCcchhhHHHHHHHHHhhheeeeec
Q 014568 394 LPAAYPYYGSAFSMMAGFFIFTIVHLY 420 (422)
Q Consensus 394 i~~a~pyy~s~~~~~~~~~~F~~~~l~ 420 (422)
+..+||.+.-+...++|+++|..+.++
T Consensus 3 l~~~~p~~LivlGg~~~lll~~glcI~ 29 (70)
T 2klu_A 3 LVPRGSMALIVLGGVAGLLLFIGLGIF 29 (70)
T ss_dssp SSCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHhHHHHHHHHHHHHHH
Confidence 467899887677777777777665543
No 132
>3hrz_A Cobra venom factor; serine protease, glycosilated, multi-domain, complement SYST convertase, complement alternate pathway; HET: NAG P6G; 2.20A {Naja kaouthia} PDB: 3frp_A* 3hs0_A*
Probab=23.19 E-value=81 Score=33.30 Aligned_cols=67 Identities=15% Similarity=0.302 Sum_probs=43.0
Q ss_pred CCcceEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCceE----eeccccCCCceEEEEEecCCc--eeeeEEEEe
Q 014568 292 EPAIYRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPYV----LKTLSTDQKGHYSAEFKVPDV--YGVFQFKVE 365 (422)
Q Consensus 292 ~~~~Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy~----R~~l~~~~~~~y~~~f~~PD~--hGvf~f~v~ 365 (422)
+...||-.|.|.|.+=.- +.++.|. ...+ .+...||-- |..++. . |+..|+||+. -|.|+.++.
T Consensus 111 Dr~iYrPGqtV~~r~i~~---d~~~~p~-~~~~--~v~i~dP~g~~i~~~~~~~---~-~~~~f~Lp~~~~~G~w~i~v~ 180 (627)
T 3hrz_A 111 DKGIYTPGSPVLYRVFSM---DHNTSKM-NKTV--IVEFQTPEGILVSSNSVDL---N-FFWPYNLPDLVSLGTWRIVAK 180 (627)
T ss_dssp SCSEECTTCEECEEEEES---CC--------CE--EEEEECTTCCEEEEEEEBT---T-BCCCEECCSSCCCEEEEEEEE
T ss_pred CCCccCCCCEEEEEEEEE---CCCCccc-CccE--EEEEECCCCCEEEEEEecc---c-eEEEEECCCCCCCeeEEEEEE
Confidence 466899999999987654 4577887 3444 455678843 333332 2 7889999995 799999998
Q ss_pred eee
Q 014568 366 YQR 368 (422)
Q Consensus 366 Y~R 368 (422)
+..
T Consensus 181 ~~~ 183 (627)
T 3hrz_A 181 YEH 183 (627)
T ss_dssp ETT
T ss_pred ECC
Confidence 864
No 133
>3u7i_A FMN-dependent NADH-azoreductase 1; structural genomics, the center for structural genomics of I diseases, csgid, oxidoreductase; HET: MSE; 1.75A {Bacillus anthracis}
Probab=22.97 E-value=3.4e+02 Score=24.21 Aligned_cols=103 Identities=15% Similarity=0.192 Sum_probs=60.5
Q ss_pred CeEEEEEcCcc--cccc-----hhHHHHHHHhC--Cc-eEEEeeCCCCCcccccc-----------C-------------
Q 014568 30 RRVLVLVDDFA--IKSS-----HSLYFGSLTSR--GF-QLEFKLADDPNIGLQRY-----------G------------- 75 (422)
Q Consensus 30 ~r~LVlld~~~--~~~~-----~S~f~~~L~~r--G~-~v~~~~~~d~~l~L~~~-----------g------------- 75 (422)
.|+|++.-+.. .+.. -..|.+.|+++ |. +++.....+..+..... +
T Consensus 5 mkIL~I~gSpr~~~~~S~s~~L~~~~~~~l~~~~~~~~ev~~idL~~~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 84 (223)
T 3u7i_A 5 NKTLIINAHPKVDDTSSVSIKVFKHFLESYKELISNNETIEQINLYDDVVPMIDKTVLSAWEKQGNGQELTREEQKVTER 84 (223)
T ss_dssp CEEEEEECCTTTTCTTSHHHHHHHHHHHHHHHHCCSSCEEEEEETTTSCCCCCCHHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CEEEEEEeCCCCCCCCChHHHHHHHHHHHHHHhCCCCCeEEEEECcCCCCCCCCHHHHHHhhccccccccCHHHHHHHHH
Confidence 47788876654 1222 33577888876 58 99987665544332210 1
Q ss_pred -------ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC---------------------CCcEEEEe-CCCC-------
Q 014568 76 -------QYLYDALVLFCPSVERFGGSIDVASIVDFVDS---------------------GHDLIVAA-DSNA------- 119 (422)
Q Consensus 76 -------~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~---------------------GGNlLi~~-~~~~------- 119 (422)
...+|.+|+..|--- ++ -+..|+.|+|. |..+++++ ..+.
T Consensus 85 ~~~l~~~~~~aD~iv~~~P~y~-~~---~p~~lK~~iD~~~~~g~~f~~~~~g~~~~l~~gK~~~~i~t~gg~~~~~~~~ 160 (223)
T 3u7i_A 85 MSEILQQFKSANTYVIVLPLHN-FN---IPSKLKDYMDNIMIARETFKYTETGSVGLLKDGRRMLVIQASGGIYTNDDWY 160 (223)
T ss_dssp HHHHHHHHHHCSEEEEEEECBT-TB---CCHHHHHHHHHHCCBTTTEEECSSCEEESCCSSCEEEEEEECSSCCSSSSHH
T ss_pred HHHHHHHHHhCCEEEEEcChhh-cc---CCHHHHHHHHHHhhcCCceecCCCCCcccccCCCEEEEEEeCCCCCCCCCcc
Confidence 145699999999654 32 33456666652 33344433 2221
Q ss_pred ------cHHHHHHHHHcCceecC
Q 014568 120 ------SDLIREVATECGVDFDE 136 (422)
Q Consensus 120 ------~~~l~~ll~elGI~~~~ 136 (422)
...++.++.-+|+....
T Consensus 161 ~~~~~~~~~l~~~l~~~G~~~~~ 183 (223)
T 3u7i_A 161 TDVEYSHKYLKAMFNFLGIEDYQ 183 (223)
T ss_dssp HHTCHHHHHHHHHHHHHTCCEEE
T ss_pred chHHHHHHHHHHHHHHCCCceeE
Confidence 13578889999998765
No 134
>2dmb_A Filamin-B; beta-sandwich, immunoglobulin-like fold, filamin domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.18.10
Probab=22.85 E-value=1.1e+02 Score=25.13 Aligned_cols=29 Identities=14% Similarity=0.383 Sum_probs=23.5
Q ss_pred cccCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 339 LSTDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 339 l~~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
++..++|+|...|+.+. -|-|+..|.|.-
T Consensus 61 v~d~~dGty~V~Y~p~~-~G~y~I~V~~~g 89 (124)
T 2dmb_A 61 VIENEDGTYDIFYTAAK-PGTYVIYVRFGG 89 (124)
T ss_dssp EEECTTSCEEEEEECSS-CEEEEEEEEESS
T ss_pred EEeCCCCEEEEEEEcCC-CEEEEEEEEECC
Confidence 33457899999999775 599999999964
No 135
>3s2y_A Chromate reductase; uranium reductase, oxidoreductase; HET: FMN PG4; 2.24A {Gluconacetobacter hansenii}
Probab=28.27 E-value=18 Score=32.26 Aligned_cols=61 Identities=13% Similarity=0.165 Sum_probs=36.7
Q ss_pred ccccCEEEEeCCCCCCCCCCccHHHHHHHHHC-------CCcEEEEe-CCC------CcHHHHHHHHHcCceecCC
Q 014568 76 QYLYDALVLFCPSVERFGGSIDVASIVDFVDS-------GHDLIVAA-DSN------ASDLIREVATECGVDFDED 137 (422)
Q Consensus 76 ~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-------GGNlLi~~-~~~------~~~~l~~ll~elGI~~~~~ 137 (422)
...+|.|||..|--. .+-.-..+.++|++.. |..+.+++ +.+ ....+|.++..+|+...+.
T Consensus 71 i~~AD~iIi~tP~Y~-~s~p~~lK~~iD~l~~~~~~~l~gK~v~~v~tsgg~~g~~~a~~~Lr~~l~~lg~~~v~~ 145 (199)
T 3s2y_A 71 IATADAVVIVTPEYN-YSVPGVLKNAIDWLSRVSPQPLAGKPVALVTASPGMIGGARAQYHLRQSLVFLDAYVLNR 145 (199)
Confidence 367799999999654 2112244555555532 33344333 221 2467899999999888764
No 136
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=22.57 E-value=84 Score=23.87 Aligned_cols=81 Identities=7% Similarity=0.098 Sum_probs=37.4
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC--C
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS--G 108 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~--G 108 (422)
|+|++=|+...+. .+...|+..||++.......+.+.+.. ...+|.+|+ ....... +--.+.+-+.+ .
T Consensus 4 ~ilivdd~~~~~~---~l~~~L~~~~~~v~~~~~~~~~~~~~~--~~~~dlvi~-d~~l~~~----~g~~~~~~l~~~~~ 73 (122)
T 1zgz_A 4 HIVIVEDEPVTQA---RLQSYFTQEGYTVSVTASGAGLREIMQ--NQSVDLILL-DINLPDE----NGLMLTRALRERST 73 (122)
T ss_dssp EEEEECSSHHHHH---HHHHHHHHTTCEEEEESSHHHHHHHHH--HSCCSEEEE-ESCCSSS----CHHHHHHHHHTTCC
T ss_pred EEEEEECCHHHHH---HHHHHHHHCCCeEEEecCHHHHHHHHh--cCCCCEEEE-eCCCCCC----ChHHHHHHHHhcCC
Confidence 5555444433333 455567778999875321111122222 234676554 4433322 22333444433 3
Q ss_pred CcEEEEeCCCCcH
Q 014568 109 HDLIVAADSNASD 121 (422)
Q Consensus 109 GNlLi~~~~~~~~ 121 (422)
..++++++....+
T Consensus 74 ~~ii~~s~~~~~~ 86 (122)
T 1zgz_A 74 VGIILVTGRSDRI 86 (122)
T ss_dssp CEEEEEESSCCHH
T ss_pred CCEEEEECCCChh
Confidence 4466666555443
No 137
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=22.47 E-value=2.4e+02 Score=21.78 Aligned_cols=92 Identities=7% Similarity=-0.012 Sum_probs=44.1
Q ss_pred CeEEEEEcCcccccchhHHHHHHHh-CCceEEEeeCCCCCccccccCc-cccCEEEEeCCCCCCCCCCccHHHHHHHHHC
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTS-RGFQLEFKLADDPNIGLQRYGQ-YLYDALVLFCPSVERFGGSIDVASIVDFVDS 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~-rG~~v~~~~~~d~~l~L~~~g~-~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~ 107 (422)
.|+||+=|+...+. .+...|++ .||++... .+..-.+..-.. ..+|.+|+ +.. +++..+--.+.+.+.+
T Consensus 5 ~~ilivdd~~~~~~---~l~~~L~~~~~~~v~~~--~~~~~a~~~l~~~~~~dlvi~-D~~---l~~~~~g~~~~~~l~~ 75 (140)
T 3lua_A 5 GTVLLIDYFEYERE---KTKIIFDNIGEYDFIEV--ENLKKFYSIFKDLDSITLIIM-DIA---FPVEKEGLEVLSAIRN 75 (140)
T ss_dssp CEEEEECSCHHHHH---HHHHHHHHHCCCEEEEE--CSHHHHHTTTTTCCCCSEEEE-CSC---SSSHHHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHH---HHHHHHHhccCccEEEE--CCHHHHHHHHhcCCCCcEEEE-eCC---CCCCCcHHHHHHHHHh
Confidence 45555544443333 45566777 89998843 222111222223 55676655 332 2102233344444443
Q ss_pred -----CCcEEEEeCCCCcHHHHHHHHHcC
Q 014568 108 -----GHDLIVAADSNASDLIREVATECG 131 (422)
Q Consensus 108 -----GGNlLi~~~~~~~~~l~~ll~elG 131 (422)
.-.++++++....+..... -+.|
T Consensus 76 ~~~~~~~~ii~ls~~~~~~~~~~~-~~~g 103 (140)
T 3lua_A 76 NSRTANTPVIIATKSDNPGYRHAA-LKFK 103 (140)
T ss_dssp SGGGTTCCEEEEESCCCHHHHHHH-HHSC
T ss_pred CcccCCCCEEEEeCCCCHHHHHHH-HHcC
Confidence 4456766666554444333 3555
No 138
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=22.00 E-value=1.4e+02 Score=22.57 Aligned_cols=83 Identities=7% Similarity=0.134 Sum_probs=36.6
Q ss_pred eEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCCc
Q 014568 31 RVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGHD 110 (422)
Q Consensus 31 r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GGN 110 (422)
|+|++=|+...+ ..+...|+..||++.......+.+.+.. ...+|.+ |.+.......+-.-.+.|.+- ..-.
T Consensus 5 ~ilivdd~~~~~---~~l~~~l~~~~~~v~~~~~~~~a~~~~~--~~~~dlv-i~D~~l~~~~g~~~~~~l~~~--~~~~ 76 (123)
T 1xhf_A 5 HILIVEDELVTR---NTLKSIFEAEGYDVFEATDGAEMHQILS--EYDINLV-IMDINLPGKNGLLLARELREQ--ANVA 76 (123)
T ss_dssp EEEEECSCHHHH---HHHHHHHHTTTCEEEEESSHHHHHHHHH--HSCCSEE-EECSSCSSSCHHHHHHHHHHH--CCCE
T ss_pred eEEEEeCCHHHH---HHHHHHHhhCCcEEEEeCCHHHHHHHHh--cCCCCEE-EEcCCCCCCCHHHHHHHHHhC--CCCc
Confidence 555444443333 3455667778999864311111122222 2346755 445433322211112333332 3445
Q ss_pred EEEEeCCCCcH
Q 014568 111 LIVAADSNASD 121 (422)
Q Consensus 111 lLi~~~~~~~~ 121 (422)
++++++.....
T Consensus 77 ii~~s~~~~~~ 87 (123)
T 1xhf_A 77 LMFLTGRDNEV 87 (123)
T ss_dssp EEEEESCCSHH
T ss_pred EEEEECCCChH
Confidence 66666554443
No 139
>1sy7_A Catalase 1; heme oxidation, singlet oxygen, oxidoreductase; HET: HDD HEM; 1.75A {Neurospora crassa} SCOP: c.23.16.3
Probab=21.97 E-value=1.4e+02 Score=32.17 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=58.7
Q ss_pred CCCeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCc------cc------cccCccccCEEEEeCCC--CCCCC
Q 014568 28 TDRRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNI------GL------QRYGQYLYDALVLFCPS--VERFG 93 (422)
Q Consensus 28 ~~~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l------~L------~~~g~~~yd~LVI~~p~--~~~~~ 93 (422)
.+.|++||+-+..+..+.....+.|+..||++++..++...+ .+ ..-....||.|||-... .+.+.
T Consensus 533 ~~rkVaILl~dGfe~~El~~p~dvL~~AG~~V~ivS~~gg~V~ss~G~~v~~d~~l~~v~~~~yDaViVPGG~~~~~~l~ 612 (715)
T 1sy7_A 533 KSRRVAIIIADGYDNVAYDAAYAAISANQAIPLVIGPRRSKVTAANGSTVQPHHHLEGFRSTMVDAIFIPGGAKAAETLS 612 (715)
T ss_dssp TTCEEEEECCTTBCHHHHHHHHHHHHHTTCEEEEEESCSSCEEBTTSCEECCSEETTTCCGGGSSEEEECCCHHHHHHHH
T ss_pred CCCEEEEEEcCCCCHHHHHHHHHHHHhcCCEEEEEECCCCceecCCCceEecccccccCCcccCCEEEEcCCcccHhhhc
Confidence 457889988776667777889999999999999987764321 11 11122568998885541 11121
Q ss_pred CCc-cHHHHHHHHHCCCcEEEEeCCCCcHHHHHHHHHc-Cc
Q 014568 94 GSI-DVASIVDFVDSGHDLIVAADSNASDLIREVATEC-GV 132 (422)
Q Consensus 94 ~~~-e~~~L~~Fi~~GGNlLi~~~~~~~~~l~~ll~el-GI 132 (422)
.+- -.+-|.++.++|. .+.+...+. .+|.+. |+
T Consensus 613 ~~~~l~~~Lr~~~~~gK-~IaAIC~G~-----~lLA~AlGL 647 (715)
T 1sy7_A 613 KNGRALHWIREAFGHLK-AIGATGEAV-----DLVAKAIAL 647 (715)
T ss_dssp TCHHHHHHHHHHHHTTC-EEEEETTHH-----HHHHHHHCC
T ss_pred cCHHHHHHHHHHHhCCC-EEEEECHHH-----HHHHHccCc
Confidence 111 2245666666665 443433321 345555 77
No 140
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=21.45 E-value=2e+02 Score=24.52 Aligned_cols=89 Identities=8% Similarity=0.004 Sum_probs=47.9
Q ss_pred EEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCC-CccHHHHHHHHHCCCcE
Q 014568 33 LVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGG-SIDVASIVDFVDSGHDL 111 (422)
Q Consensus 33 LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~-~~e~~~L~~Fi~~GGNl 111 (422)
++++|..... ...+.+.|++.|.++....++. + +.......+|.|||-... . ... ....+.|++++++|.-+
T Consensus 3 i~iid~~~~~--~~~~~~~l~~~G~~~~~~~~~~-~--~~~~~~~~~dglil~Gg~-~-~~~~~~~~~~i~~~~~~~~Pi 75 (189)
T 1wl8_A 3 IVIMDNGGQY--VHRIWRTLRYLGVETKIIPNTT-P--LEEIKAMNPKGIIFSGGP-S-LENTGNCEKVLEHYDEFNVPI 75 (189)
T ss_dssp EEEEECSCTT--HHHHHHHHHHTTCEEEEEETTC-C--HHHHHHTCCSEEEECCCS-C-TTCCTTHHHHHHTGGGTCSCE
T ss_pred EEEEECCCch--HHHHHHHHHHCCCeEEEEECCC-C--hHHhcccCCCEEEECCCC-C-hhhhhhHHHHHHHHhhCCCeE
Confidence 4566765322 3378889999999998765433 1 111112458998886554 2 211 11244455555555445
Q ss_pred EEEeCCCCcHHHHHHHHHcCce
Q 014568 112 IVAADSNASDLIREVATECGVD 133 (422)
Q Consensus 112 Li~~~~~~~~~l~~ll~elGI~ 133 (422)
|=. =-+..-++..+|-.
T Consensus 76 lGI-----C~G~Q~l~~~~gg~ 92 (189)
T 1wl8_A 76 LGI-----CLGHQLIAKFFGGK 92 (189)
T ss_dssp EEE-----THHHHHHHHHHTCE
T ss_pred EEE-----cHHHHHHHHHhCCc
Confidence 411 12455566666533
No 141
>2fcr_A Flavodoxin; electron transport; HET: FMN; 1.80A {Chondrus crispus} SCOP: c.23.5.1
Probab=20.79 E-value=2.5e+02 Score=23.61 Aligned_cols=59 Identities=20% Similarity=0.150 Sum_probs=34.7
Q ss_pred cccCEEEEeCCCCCCCCCCcc---HHHHHHHH-HC-------CCcEEEEeC-C-C--------CcHHHHHHHHHcCceec
Q 014568 77 YLYDALVLFCPSVERFGGSID---VASIVDFV-DS-------GHDLIVAAD-S-N--------ASDLIREVATECGVDFD 135 (422)
Q Consensus 77 ~~yd~LVI~~p~~~~~~~~~e---~~~L~~Fi-~~-------GGNlLi~~~-~-~--------~~~~l~~ll~elGI~~~ 135 (422)
..||.|||..|.-. .+ ..+ +..+.+|+ ++ |-.+.+.+. . . ....+...+++.|..+.
T Consensus 44 ~~~d~ii~g~pt~~-~G-~~~~~~p~~~~~fl~~~l~~~~l~gk~~avfg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~~ 121 (173)
T 2fcr_A 44 KDYDLLFLGAPTWN-TG-ADTERSGTSWDEFLYDKLPEVDMKDLPVAIFGLGDAEGYPDNFCDAIEEIHDCFAKQGAKPV 121 (173)
T ss_dssp GGCSEEEEEEECCS-TT-CSSCCSCSTHHHHHHHTGGGCCCTTCEEEEEEEECTTTCTTSTTTHHHHHHHHHHHTTCEEE
T ss_pred ccCCEEEEEEeecC-CC-CcCccCcHHHHHHHHhhccccccCCCEEEEEEECCCchhhHHHHHHHHHHHHHHHHCCCEEE
Confidence 56899999988743 11 221 34567777 52 334444432 1 1 12577788888887766
Q ss_pred CC
Q 014568 136 ED 137 (422)
Q Consensus 136 ~~ 137 (422)
..
T Consensus 122 ~~ 123 (173)
T 2fcr_A 122 GF 123 (173)
T ss_dssp CC
T ss_pred ee
Confidence 53
No 142
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=20.78 E-value=1.9e+02 Score=22.51 Aligned_cols=91 Identities=13% Similarity=0.148 Sum_probs=43.2
Q ss_pred CeEEEEEcCcccccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHC--
Q 014568 30 RRVLVLVDDFAIKSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDS-- 107 (422)
Q Consensus 30 ~r~LVlld~~~~~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~-- 107 (422)
.|+|++=|+...+ ..+...|++.||++... .+..-.+..-....+|.+|+=. .. ..+.-.+.+.+.+
T Consensus 5 ~~iLivdd~~~~~---~~l~~~L~~~g~~v~~~--~~~~~a~~~l~~~~~dlvi~d~--~~----~~~g~~~~~~l~~~~ 73 (142)
T 2qxy_A 5 PTVMVVDESRITF---LAVKNALEKDGFNVIWA--KNEQEAFTFLRREKIDLVFVDV--FE----GEESLNLIRRIREEF 73 (142)
T ss_dssp CEEEEECSCHHHH---HHHHHHHGGGTCEEEEE--SSHHHHHHHHTTSCCSEEEEEC--TT----THHHHHHHHHHHHHC
T ss_pred CeEEEEeCCHHHH---HHHHHHHHhCCCEEEEE--CCHHHHHHHHhccCCCEEEEeC--CC----CCcHHHHHHHHHHHC
Confidence 4556554443333 35666778889998743 2211112222234578766643 22 1222233333332
Q ss_pred -CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 108 -GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 108 -GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
.-.++++++....+... -+.+.|+
T Consensus 74 ~~~pii~ls~~~~~~~~~-~~~~~g~ 98 (142)
T 2qxy_A 74 PDTKVAVLSAYVDKDLII-NSVKAGA 98 (142)
T ss_dssp TTCEEEEEESCCCHHHHH-HHHHHTC
T ss_pred CCCCEEEEECCCCHHHHH-HHHHCCc
Confidence 34466666655443333 3444554
No 143
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=20.55 E-value=1.1e+02 Score=26.17 Aligned_cols=82 Identities=11% Similarity=0.002 Sum_probs=44.7
Q ss_pred HHHHHHhCCceEEEeeCCCCCcccc-ccCccccCEEEEeCCCCCCCCCCccHHHHHHHHHCCC--cEE-EEeCCCCcHHH
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIGLQ-RYGQYLYDALVLFCPSVERFGGSIDVASIVDFVDSGH--DLI-VAADSNASDLI 123 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~L~-~~g~~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi~~GG--NlL-i~~~~~~~~~l 123 (422)
+...|+..||++.+...+-+.-.+. .-.+...|.+.|-....... ...+.+.+-+.+-| ++. ++++....+.
T Consensus 38 va~~l~~~G~eVi~lG~~~p~e~lv~aa~~~~~diV~lS~~~~~~~---~~~~~~i~~L~~~g~~~i~v~vGG~~~~~~- 113 (161)
T 2yxb_A 38 VARALRDAGFEVVYTGLRQTPEQVAMAAVQEDVDVIGVSILNGAHL---HLMKRLMAKLRELGADDIPVVLGGTIPIPD- 113 (161)
T ss_dssp HHHHHHHTTCEEECCCSBCCHHHHHHHHHHTTCSEEEEEESSSCHH---HHHHHHHHHHHHTTCTTSCEEEEECCCHHH-
T ss_pred HHHHHHHCCCEEEECCCCCCHHHHHHHHHhcCCCEEEEEeechhhH---HHHHHHHHHHHhcCCCCCEEEEeCCCchhc-
Confidence 5567899999999865443322232 22235668777755433322 23455554454433 443 3444433333
Q ss_pred HHHHHHcCce
Q 014568 124 REVATECGVD 133 (422)
Q Consensus 124 ~~ll~elGI~ 133 (422)
-..+++.|++
T Consensus 114 ~~~l~~~G~d 123 (161)
T 2yxb_A 114 LEPLRSLGIR 123 (161)
T ss_dssp HHHHHHTTCC
T ss_pred HHHHHHCCCc
Confidence 3468899996
No 144
>1kwg_A Beta-galactosidase; TIM barrel, glycoside hydrolase family 42, trimer, hydrolase; 1.60A {Thermus thermophilus} SCOP: b.71.1.1 c.1.8.1 c.23.16.5 PDB: 1kwk_A*
Probab=20.30 E-value=1.2e+02 Score=31.81 Aligned_cols=78 Identities=15% Similarity=0.194 Sum_probs=51.4
Q ss_pred CCCCCeEEEEEcCccc--------------ccchhHHHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCC
Q 014568 26 NPTDRRVLVLVDDFAI--------------KSSHSLYFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVER 91 (422)
Q Consensus 26 ~~~~~r~LVlld~~~~--------------~~~~S~f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~ 91 (422)
+....++-||+|..+. .+..-.+...|..+|..+++..+++. | ..|+.||+ |....
T Consensus 394 ~~~~a~VAil~d~~s~wa~~~~p~~~~~~y~~~~~~~y~al~~~g~~vd~v~~~~~---l-----~~y~lvv~--P~~~~ 463 (645)
T 1kwg_A 394 PVAQAPVALVFDYEAAWIYEVQPQGAEWSYLGLVYLFYSALRRLGLDVDVVPPGAS---L-----RGYAFAVV--PSLPI 463 (645)
T ss_dssp CCCCCSEEEECCHHHHHHHHHCCSSTTCCHHHHHHHHHHHHHTTTCCEEEECTTSC---C-----TTCSEEEE--SCCSS
T ss_pred CCCCCCEEEEechhhhhhhccCCcccccCHHHHHHHHHHHHHHhCCCeeEECCCCC---c-----ccCCEEEE--echhh
Confidence 4456788888884321 11233578889999999999866542 3 35677666 55554
Q ss_pred CCCCccHHHHHHHHHCCCcEEEEeCC
Q 014568 92 FGGSIDVASIVDFVDSGHDLIVAADS 117 (422)
Q Consensus 92 ~~~~~e~~~L~~Fi~~GGNlLi~~~~ 117 (422)
+. +...++|.+ +||.|++..-+
T Consensus 464 ~~-~~~~~~L~~---~GG~lv~~~~s 485 (645)
T 1kwg_A 464 VR-EEALEAFRE---AEGPVLFGPRS 485 (645)
T ss_dssp CC-HHHHHHHHT---CSSCEEECTTT
T ss_pred cC-HHHHHHHHh---CCCEEEEeccC
Confidence 53 456677777 89999976443
No 145
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=20.26 E-value=1.6e+02 Score=23.15 Aligned_cols=93 Identities=11% Similarity=0.154 Sum_probs=42.8
Q ss_pred CCeEEEEEcCcccccchhHHHHHHHhCC-ceEEEeeCCCCCccccccCc--cccCEEEEeCCCCCCCCCCccHHHHHHHH
Q 014568 29 DRRVLVLVDDFAIKSSHSLYFGSLTSRG-FQLEFKLADDPNIGLQRYGQ--YLYDALVLFCPSVERFGGSIDVASIVDFV 105 (422)
Q Consensus 29 ~~r~LVlld~~~~~~~~S~f~~~L~~rG-~~v~~~~~~d~~l~L~~~g~--~~yd~LVI~~p~~~~~~~~~e~~~L~~Fi 105 (422)
+.|+||+=|+...+. .+...|++.| |++.... +..-.+..... ..+|.+|+ +.... ..+--.+.+.+
T Consensus 20 ~~~ilivdd~~~~~~---~l~~~L~~~g~~~v~~~~--~~~~~~~~~~~~~~~~dlvi~-D~~l~----~~~g~~~~~~l 89 (146)
T 4dad_A 20 MINILVASEDASRLA---HLARLVGDAGRYRVTRTV--GRAAQIVQRTDGLDAFDILMI-DGAAL----DTAELAAIEKL 89 (146)
T ss_dssp GCEEEEECSCHHHHH---HHHHHHHHHCSCEEEEEC--CCHHHHTTCHHHHTTCSEEEE-ECTTC----CHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHH---HHHHHHhhCCCeEEEEeC--CHHHHHHHHHhcCCCCCEEEE-eCCCC----CccHHHHHHHH
Confidence 445555444443333 4556677788 9988632 22112222212 45676555 43222 12222333333
Q ss_pred H-C--CCcEEEEeCCCCcHHHHHHHHHcCc
Q 014568 106 D-S--GHDLIVAADSNASDLIREVATECGV 132 (422)
Q Consensus 106 ~-~--GGNlLi~~~~~~~~~l~~ll~elGI 132 (422)
. . .-.++++++....+.....+ +.|+
T Consensus 90 ~~~~~~~~ii~lt~~~~~~~~~~~~-~~ga 118 (146)
T 4dad_A 90 SRLHPGLTCLLVTTDASSQTLLDAM-RAGV 118 (146)
T ss_dssp HHHCTTCEEEEEESCCCHHHHHHHH-TTTE
T ss_pred HHhCCCCcEEEEeCCCCHHHHHHHH-HhCC
Confidence 2 2 34566666665544443333 4443
No 146
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Probab=20.21 E-value=72 Score=27.90 Aligned_cols=87 Identities=10% Similarity=0.187 Sum_probs=46.5
Q ss_pred HHHHHHhCCceEEEeeCCCCCccccccCccccCEEEEeCCCCCCC------------CCCcc-------HHHHHHHHHCC
Q 014568 48 YFGSLTSRGFQLEFKLADDPNIGLQRYGQYLYDALVLFCPSVERF------------GGSID-------VASIVDFVDSG 108 (422)
Q Consensus 48 f~~~L~~rG~~v~~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~~------------~~~~e-------~~~L~~Fi~~G 108 (422)
-.+.++..|..+++...+-.. +....+..||.++..+|-...- ++... .+.+.+.+..|
T Consensus 95 a~~~~~~~~~~v~~~~~d~~~--~~~~~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 95 ARRNIERNNSNVRLVKSNGGI--IKGVVEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp HHHHHHHTTCCCEEEECSSCS--STTTCCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred HHHHHHHhCCCcEEEeCCchh--hhhcccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 344555566666665333211 1122236789888776632200 00001 23344456679
Q ss_pred CcEEEEeCCC--CcHHHHHHHHHcCceecC
Q 014568 109 HDLIVAADSN--ASDLIREVATECGVDFDE 136 (422)
Q Consensus 109 GNlLi~~~~~--~~~~l~~ll~elGI~~~~ 136 (422)
|.+++..+.. ..+.+...+++.|.++..
T Consensus 173 G~l~~~~~~~~~~~~~~~~~l~~~g~~~~~ 202 (230)
T 3evz_A 173 GKVALYLPDKEKLLNVIKERGIKLGYSVKD 202 (230)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred eEEEEEecccHhHHHHHHHHHHHcCCceEE
Confidence 9888766543 346788889999875543
No 147
>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}
Probab=20.12 E-value=63 Score=31.50 Aligned_cols=83 Identities=10% Similarity=0.070 Sum_probs=46.7
Q ss_pred HHHHhCCceEE------EeeCCCCCccccccCccccCEEEEeCCCCCC---CCC---------CccHHHHHHHHHCCCcE
Q 014568 50 GSLTSRGFQLE------FKLADDPNIGLQRYGQYLYDALVLFCPSVER---FGG---------SIDVASIVDFVDSGHDL 111 (422)
Q Consensus 50 ~~L~~rG~~v~------~~~~~d~~l~L~~~g~~~yd~LVI~~p~~~~---~~~---------~~e~~~L~~Fi~~GGNl 111 (422)
+.+++.|.++. ...+++..+.+.....-.||.|||+...... +.+ ..+...+.+.+..|.++
T Consensus 70 ~~~~~~~i~~~~~~~V~~id~~~~~v~~~~g~~~~yd~lvlAtG~~p~~p~i~G~~~v~~~~~~~d~~~l~~~l~~~~~v 149 (385)
T 3klj_A 70 DWYEKNNIKVITSEFATSIDPNNKLVTLKSGEKIKYEKLIIASGSIANKIKVPHADEIFSLYSYDDALKIKDECKNKGKA 149 (385)
T ss_dssp HHHHHTTCEEECSCCEEEEETTTTEEEETTSCEEECSEEEECCCEEECCCCCTTCSCEECCSSHHHHHHHHHHHHHHSCE
T ss_pred HHHHHCCCEEEeCCEEEEEECCCCEEEECCCCEEECCEEEEecCCCcCCCCCCCCCCeEEeCCHHHHHHHHHHhhcCCeE
Confidence 34455665543 2234444344443335679999998654321 211 11335677777789999
Q ss_pred EEEeCCCCcHHHHHHHHHcCc
Q 014568 112 IVAADSNASDLIREVATECGV 132 (422)
Q Consensus 112 Li~~~~~~~~~l~~ll~elGI 132 (422)
+|.++....-.+-..+.+.|.
T Consensus 150 vVIGgG~~g~E~A~~l~~~g~ 170 (385)
T 3klj_A 150 FIIGGGILGIELAQAIIDSGT 170 (385)
T ss_dssp EEECCSHHHHHHHHHHHHHTC
T ss_pred EEECCCHHHHHHHHHHHhCCC
Confidence 988765444344455566663
No 148
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A
Probab=20.03 E-value=1.3e+02 Score=29.34 Aligned_cols=62 Identities=18% Similarity=0.404 Sum_probs=45.2
Q ss_pred eEeCCceEEEEEEEEEeCCeeeecccCCeEEEEEEeCce---Eeeccc--cCCCceEEEEEecCCceeeeEEEEeeee
Q 014568 296 YRINDDLEYSVEIYEWSGTSWEPYVSDDVQVQFYMMSPY---VLKTLS--TDQKGHYSAEFKVPDVYGVFQFKVEYQR 368 (422)
Q Consensus 296 Y~i~d~v~y~i~i~e~~~~~w~P~~~~d~QlEf~mldPy---~R~~l~--~~~~~~y~~~f~~PD~hGvf~f~v~Y~R 368 (422)
=+++...+|+|+-.+ |..=+|+....+|- ....++ ..++|+|.++| .|..-|.|+..|.|..
T Consensus 269 ~~vg~p~~F~Vdt~~----------AG~g~l~v~V~~P~G~~~~~~v~~~~~~~gty~v~y-~P~~~G~~~I~V~~~g 335 (347)
T 4b7l_A 269 NMVKQPAKFTVDTIS----------AGQGDVMVFVEDPEGNKEEAQVTPDSDKNKTYSVEY-LPKVTGLHKVTVLFAG 335 (347)
T ss_dssp CCTTSCEEEEEECTT----------TCSCCEEEEEECTTSCEEECEEEESSTTCSEEEEEE-CCCSSSEEEEEEEETT
T ss_pred ceeCCEEEEEEEeCC----------CCCCceEEEEECCCCCeecCEEEEEcCCCCEEEEEE-EECCCEeEEEEEEECC
Confidence 467888888887653 33345777788883 333333 45689999999 6899999999999864
Done!