Query 014569
Match_columns 422
No_of_seqs 179 out of 843
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 06:24:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014569.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014569hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 CHL00177 ccs1 c-type cytochrom 100.0 3.4E-83 7.4E-88 660.8 35.3 316 94-417 1-316 (426)
2 PF05140 ResB: ResB-like famil 100.0 1.4E-62 3E-67 513.3 30.8 287 107-405 1-314 (464)
3 COG1333 ResB ResB protein requ 100.0 1.4E-58 3E-63 473.9 19.4 293 107-408 1-323 (478)
4 PRK10369 heme lyase subunit Nr 97.4 0.0015 3.2E-08 71.0 12.3 75 250-343 418-492 (571)
5 TIGR03145 cyt_nit_nrfE cytochr 97.2 0.0024 5.2E-08 70.2 11.4 78 246-342 478-555 (628)
6 TIGR00353 nrfE c-type cytochro 96.4 0.011 2.5E-07 64.5 8.6 79 246-343 421-499 (576)
7 COG1138 CcmF Cytochrome c biog 93.1 0.2 4.4E-06 55.3 6.6 84 241-343 480-564 (648)
8 PF11669 WBP-1: WW domain-bind 41.7 18 0.0004 30.9 2.0 25 162-186 17-41 (102)
9 TIGR00351 narI respiratory nit 40.2 17 0.00037 35.3 1.8 27 249-275 46-72 (224)
10 cd02850 Cellulase_N_term Cellu 38.3 39 0.00085 27.6 3.4 35 334-368 30-64 (86)
11 cd00255 nidG2 Nidogen, G2 doma 33.9 4.6E+02 0.0099 25.8 10.4 122 232-367 30-186 (224)
12 COG2181 NarI Nitrate reductase 32.0 30 0.00065 34.0 2.0 25 250-274 46-70 (228)
13 PF07474 G2F: G2F domain; Int 30.4 4.7E+02 0.01 25.1 9.7 113 243-358 43-184 (192)
14 PF12751 Vac7: Vacuolar segreg 28.5 48 0.001 34.9 2.9 35 243-277 293-327 (387)
15 PF12911 OppC_N: N-terminal TM 28.1 30 0.00064 25.6 1.0 33 95-127 3-38 (56)
16 CHL00177 ccs1 c-type cytochrom 24.3 2.1E+02 0.0046 30.5 6.9 69 327-400 318-397 (426)
17 PF13124 DUF3963: Protein of u 23.9 90 0.0019 22.2 2.6 34 91-124 7-40 (40)
18 PRK10747 putative protoheme IX 23.4 52 0.0011 34.0 2.1 23 162-184 36-58 (398)
19 PRK10617 cytochrome c-type pro 22.5 75 0.0016 30.6 2.8 10 96-105 10-19 (200)
20 cd00057 FA58C Substituted upda 22.4 4.3E+02 0.0092 22.3 7.4 58 310-368 72-133 (143)
21 PF02665 Nitrate_red_gam: Nitr 22.0 51 0.0011 31.8 1.6 24 250-273 45-68 (222)
22 TIGR00540 hemY_coli hemY prote 21.1 54 0.0012 34.0 1.7 22 162-183 36-57 (409)
No 1
>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated
Probab=100.00 E-value=3.4e-83 Score=660.76 Aligned_cols=316 Identities=38% Similarity=0.718 Sum_probs=301.7
Q ss_pred cchHHHHHHHhcChhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHH
Q 014569 94 KRLPRRVLAALSNLPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLL 173 (422)
Q Consensus 94 ~~~~kki~~~LsSlkLAI~LLllIai~SiiGT~IpQ~~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL 173 (422)
++|++++|++|+|||+||+||++||++|++||+|||+++.++|+++||+++|+||+.+|+++++|||||||+||||++|+
T Consensus 1 ~~~~~~~~~~l~Slr~ai~LL~~ia~~s~~GT~i~Q~~~~~~Y~~~yp~~~p~~G~~~~~~~~~LgL~~vY~s~WF~~ll 80 (426)
T CHL00177 1 KNMKQKLLKLLANLKFAIILLLLIAIFSVIGTIIEQDQSIEFYKNNYPLSNPIFGFLSWKIILKLGLDHIYKTWWFLSLL 80 (426)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhheeEccCCCCHHHHHHhccccccccchhHHHHHHhcCCCccccCHHHHHHH
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhhcCchhHHHHhhccccccChHhhhccCcccccchhhHHHHHHHHHhcCeEEEeecceEEEEccccccch
Q 014569 174 VMMGLSLMACTYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLPRASIQDLGVILMGAGYEVFLKGPSLYAFKGLVGRFA 253 (422)
Q Consensus 174 ~LL~lsL~~CT~~R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~~~~~~~l~~~L~~~gy~v~~~~~~lyA~KG~~grlG 253 (422)
+||++||++||++||+|+||.+|+|++++.|++++|++.+.+++.+..+++.+.|+++||+|+++++.+||+||+++|+|
T Consensus 81 ~ll~isL~~Cs~~R~~p~lk~~r~~~~~~~~~~l~kl~~~~~~~~~~~~~~~~~L~~~gy~v~~~~~~l~A~KG~~gr~G 160 (426)
T CHL00177 81 LLFGLSLLLCTLLQQLPSLKIARRWQFYTNKNQFKKLQISTNLKKFSLSKLAYKLKSKNYSIFQQGNKIYAYKGLIGRIA 160 (426)
T ss_pred HHHHHHHhheeecccHHHHHHHhcCcccCChhHhhcCccccccchhHHHHHHHHHHHCCeEEEEeCcEEEEecCcchhhh
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceeeEEEE
Q 014569 254 PIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDL 333 (422)
Q Consensus 254 pilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~SdL 333 (422)
|+++|+|||+||+|+++|+++||+|+++++|||++++++...+|+ ++.+|+ ++||||||+++||++|+|+||+|||
T Consensus 161 ~~lvHlslIvIL~Gal~g~l~G~~g~~~i~eGe~~~i~~~~~~g~-~~~l~~---~svrl~~F~i~y~~~g~p~qF~Sdl 236 (426)
T CHL00177 161 PIIVHFSMILILIGSILGALSGFTAQEIIPKTEIFHIQNIISSGQ-LSKIPQ---ESARVNDFWITYTPEKSIKQFYSDL 236 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcccceEEEEEEcCCCceecccccCCCC-ccccCC---cEEEEeeEEEEEcCCCCcceEEEEE
Confidence 999999999999999999999999999999999999888665665 455564 4999999999999999999999999
Q ss_pred EEEecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcceEEeceeeccCCCceEEEEeecCCCCCCCCCcc
Q 014569 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLPLGDVNSPNVKG 413 (422)
Q Consensus 334 sI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~~~lp~~~~~~~g~~~~w~~~~p~~~~~~~~~~~ 413 (422)
++.|++|+|+.+++|+|||||+|+|++|||+|||.+++++++++++.+|+||++++.+| +++|++|+|+++|++ ++
T Consensus 237 si~d~~g~e~~~~tI~VN~PL~y~G~~iYQss~~~~~~~v~~~~~~~~~~pl~~~~~~~-~~~~~~~lP~~~~~~---~~ 312 (426)
T CHL00177 237 SILNSEGKEIKRKTISVNHPLKYKGLTIYQTDWNIIGLRIKIGNSKIIQIPLIKIENNN-NKIWLTWIPLNKQNQ---SG 312 (426)
T ss_pred EEEcCCCCeeeeEEEEecCCEEECCEEEEEeccccccEEEEeCCCceEEEEeccccCCC-CeeEeeecCCCCCCC---cc
Confidence 99998999999999999999999999999999999999999999999999999999885 999999999988777 67
Q ss_pred eEEE
Q 014569 414 ILFF 417 (422)
Q Consensus 414 ~~~~ 417 (422)
++|+
T Consensus 313 ~~l~ 316 (426)
T CHL00177 313 LTLV 316 (426)
T ss_pred EEEE
Confidence 7774
No 2
>PF05140 ResB: ResB-like family ; InterPro: IPR007816 This domain is found in a number of known and suspected cytochrome c biogenesis proteins, including ResB []. Mutations in ResB indicate that they are essential for growth []. ResB is predicted to be a transmembrane protein.
Probab=100.00 E-value=1.4e-62 Score=513.30 Aligned_cols=287 Identities=32% Similarity=0.507 Sum_probs=253.3
Q ss_pred hhHHHHHHHHHHHHhheeEEeccCCCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhhhhc
Q 014569 107 LPLAIGEMAAIAALMALGTAIEQGEVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMACTYT 186 (422)
Q Consensus 107 lkLAI~LLllIai~SiiGT~IpQ~~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL~LL~lsL~~CT~~ 186 (422)
||+||+||++||++|++||+|||+++.++|.++| |+.+++|+++|||+||||||||++|++||++||++||++
T Consensus 1 mklai~Ll~~la~~s~iGt~ipQ~~~~~~y~~~~-------g~~~~~i~~~Lgl~~vy~S~wF~~ll~ll~~sL~~Cs~~ 73 (464)
T PF05140_consen 1 MKLAIFLLLLLAIASIIGTLIPQGQPPEFYQQNY-------GPFWGPIFDRLGLFDVYSSWWFLLLLVLLALSLIACSID 73 (464)
T ss_pred CcHHHHHHHHHHHHHhceeeecCCCcHHHHHHHh-------CchHHHHHHHcCCCceEecHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999999999999999 888899999999999999999999999999999999999
Q ss_pred CchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHHhcCeEEEeecc----eEEEEccccccchhhHH
Q 014569 187 TQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLKGP----SLYAFKGLVGRFAPIGV 257 (422)
Q Consensus 187 R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~-----~~~~~~l~~~L~~~gy~v~~~~~----~lyA~KG~~grlGpilv 257 (422)
|++++||.+|+++....++.+++++.+.+++ ++..+++.+.|+++||+|.++++ .+||+||+|+|||++++
T Consensus 74 R~~~~~k~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gyrv~~~~~~~~~~l~a~kg~~~~~G~~l~ 153 (464)
T PF05140_consen 74 RLPPLWKALRRPPPPKPARFLKRMPLSATFPVPGDPEEALERLAALLKKKGYRVRRQEDGGGVFLYAEKGRWGRWGSLLF 153 (464)
T ss_pred HHHHHHHHHcCCCCCCChhHhhcCCceEEEEcCCChHHHHHHHHHHHHhCCcEEEEecCCCcEEEEEEcCcchhhhHHHH
Confidence 9999999999999999999999999988875 56788999999999999998765 49999999999999999
Q ss_pred HHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCC-CCCcCCCCCCcceEEEEccEEEEEecCCCceeeEEEEEEE
Q 014569 258 HLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGP-NGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHSDLSLF 336 (422)
Q Consensus 258 HlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~-g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~SdLsI~ 336 (422)
|+|||+||+|+++++++||+|+++++|||++++...... |.++ ...||+|+||||+++||++|+|++|+|||++.
T Consensus 154 Hlslivil~G~~~~~~~g~~g~~~l~eG~~~~~~~~~~~~g~~~----~~~~f~i~l~~F~~~~~~~g~~~~~~S~v~i~ 229 (464)
T PF05140_consen 154 HLSLIVILIGALLGSLFGFRGQVMLPEGETFDIPYDSFESGPLF----QPLPFSIRLDDFTIEYYPNGSPKQYASDVTIL 229 (464)
T ss_pred HHHHHHHHHHHHhhcccceeEEEEEecCCccccccccccccccc----cccceEEEEeeEEEEecccccccceEEEEEEE
Confidence 999999999999999999999999999999988654332 3311 35689999999999999999999999999999
Q ss_pred ecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcc-----------eEEeceeeccCCC------ceEEEE
Q 014569 337 DIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGP-----------FNLAMAPLKVNGD------KKLFGT 399 (422)
Q Consensus 337 d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~-----------~~lp~~~~~~~g~------~~~w~~ 399 (422)
|++|+++.+++|+|||||+|+|++|||+||| ++.....++++. -+.+...++..+. -++|+.
T Consensus 230 ~~~~~~~~~~~I~VN~Pl~~~G~~~YQss~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 308 (464)
T PF05140_consen 230 DGGGGEVKRATISVNHPLRYKGYRFYQSSYG-APGFTVTDTSGKLIFDSGQPQFLPQVPGDSISLPGGYQDGYQLQFWDF 308 (464)
T ss_pred cCCCCcceeEEEEecccEEECCEEEEeccCC-CCceEEEecCCcccccccccccccccccceecccccCCCccEEEEEEE
Confidence 9776899999999999999999999999999 764333333322 2335555555543 278999
Q ss_pred eecCCC
Q 014569 400 FLPLGD 405 (422)
Q Consensus 400 ~~p~~~ 405 (422)
+.|...
T Consensus 309 ~~~~~~ 314 (464)
T PF05140_consen 309 FPDFVP 314 (464)
T ss_pred Eccccc
Confidence 988643
No 3
>COG1333 ResB ResB protein required for cytochrome c biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-58 Score=473.88 Aligned_cols=293 Identities=28% Similarity=0.431 Sum_probs=255.5
Q ss_pred hhHHHHHHHHHHHHhheeEEeccC---CCchhhhccCCCCCCCCccchHHHHHHhCCCcccccHHHHHHHHHHHHHhhhh
Q 014569 107 LPLAIGEMAAIAALMALGTAIEQG---EVPDFYFQKYPEDNPVFGFFTWRWILTLGFDHMFSSPIFLGLLVMMGLSLMAC 183 (422)
Q Consensus 107 lkLAI~LLllIai~SiiGT~IpQ~---~~~~fY~~~yp~~~p~lG~~~~~ii~~LGL~~VYsSwWFl~LL~LL~lsL~~C 183 (422)
||+||+||++||++|++||++||+ ++.+.|...+ |+.+|+||+.|||+|||+||||++|++||++||++|
T Consensus 1 mr~AI~LL~llaiaSi~GTvl~Q~~~N~~~~~y~~~f-------g~~~gq~~~~Lgl~~Vy~SwWfl~iivlL~VSLv~C 73 (478)
T COG1333 1 MRLAIALLLLLAIASIPGTVLPQRGLNQPYPDYYAEF-------GGLWGQWIDQLGLFDVYSSWWFLAIIVLLGVSLVGC 73 (478)
T ss_pred ChhHHHHHHHHHHHhcccceeeccccCCCCcchHHHh-------CchHHHHHHHhccchHHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999999999994 5544444443 788899999999999999999999999999999999
Q ss_pred hhcCchhHHHHhhccccccChHhhhccCcccccc-----hhhHHHHHHHHHhcCeEEEee-cceEEEEccccccchhhHH
Q 014569 184 TYTTQIPLVKVARRWSFLHSAEAIRKQEFSDTLP-----RASIQDLGVILMGAGYEVFLK-GPSLYAFKGLVGRFAPIGV 257 (422)
Q Consensus 184 T~~R~~p~lk~~r~w~~~~~~~~~~kl~~~~~l~-----~~~~~~l~~~L~~~gy~v~~~-~~~lyA~KG~~grlGpilv 257 (422)
++.|.++.+|+. ||+.+..|+++++++++.+++ +++.+++.+.|+++||+++++ +..++|+||+.+||||+++
T Consensus 74 ~lpr~~~~~ra~-r~~~~~~p~~l~r~~h~~~~~v~~~~~~~~~~i~~~L~~~~~kir~e~~~~i~AeKG~~~r~G~ii~ 152 (478)
T COG1333 74 SLPRFPALYRAL-RAKPVRAPRNLARLRHSAELDVKIDPEAVKAKIEKLLRGKGYKIREEGSVSIAAEKGRFSRWGPIIF 152 (478)
T ss_pred cccccHHHHHHh-hcccccCchhHHhhhccCccccCCchHHHHHHHHHHHhcCCeEEEeccceeEEeccccccchhhHHH
Confidence 999988887766 578899999999999998874 347889999999999999998 7899999999999999999
Q ss_pred HHHHHHHHHhhhce-ecceeEEEEEEeCCcee-----eeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceeeEE
Q 014569 258 HLAMLLIMAGGTLS-ATGSFRGSVTVPQGLNF-----VVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQFHS 331 (422)
Q Consensus 258 HlslIlIL~Gallg-~l~Gf~g~~~l~eGe~~-----~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf~S 331 (422)
|+|||+||+|++++ .+.|+....+|++||+. ...+.+..|..++. ...+||++++|+|+++|+++|++++|+|
T Consensus 153 HiaLliil~Gal~~~~~~Gm~~~~~V~~Ge~~~~~lpa~~~~fr~g~~~~~-~~l~~f~v~v~rf~~dy~~~g~~~~f~s 231 (478)
T COG1333 153 HIALLIILVGALLDFFYEGMVVGEIVPDGETNCSALPAANDKFRAGPTADG-TILLPFCVRVNRFGIDYLPTGQAYSFAS 231 (478)
T ss_pred HHHHHHHHHHHHHhhcccceeEeEEecCCCcccccccccccccccCCccce-eeeehHHHHHHhcccccccccchhhhcC
Confidence 99999999999999 68899999999999998 22334444542222 2336899999999999999999999999
Q ss_pred EEEEEecCCCeeEEEEEEeCcceEECCeEEEecCCCCceEEEEECCCcceEEeceeecc--------------CCC-ceE
Q 014569 332 DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKV--------------NGD-KKL 396 (422)
Q Consensus 332 dLsI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~~~lp~~~~~~--------------~g~-~~~ 396 (422)
|+++.|.+++++.+++|+|||||+|+|++|||+|||+++..+..+..+.-+.|+..-.. +|. -.+
T Consensus 232 dI~v~~~~~~~~~~~~IrVN~PLr~~G~~vYq~d~G~~~~~t~~~~~~~~rt~~~~~~~~~~~~~l~~~fd~~~G~~v~i 311 (478)
T COG1333 232 DISVTDGQGEEVAEYTIRVNHPLRYGGVRVYQADYGIAPTFTVTFPLGATRTPTVLWRTDIPQTLLSSVFDPPNGMKVAI 311 (478)
T ss_pred CceEEcCCcceeeeeeEEccCCEeecceEEEEecCccccceeEeccCcccccccccccccccccCccceecCCCcceEEe
Confidence 99999988999999999999999999999999999999998888888777777776654 332 579
Q ss_pred EEEeecCCCCCC
Q 014569 397 FGTFLPLGDVNS 408 (422)
Q Consensus 397 w~~~~p~~~~~~ 408 (422)
|+.++|+.+++.
T Consensus 312 ~g~~~Pt~~~~~ 323 (478)
T COG1333 312 QGLLIPTKQLNG 323 (478)
T ss_pred eccccCceeecc
Confidence 999999987665
No 4
>PRK10369 heme lyase subunit NrfE; Provisional
Probab=97.40 E-value=0.0015 Score=71.00 Aligned_cols=75 Identities=13% Similarity=0.180 Sum_probs=60.6
Q ss_pred ccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCCceee
Q 014569 250 GRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGEVKQF 329 (422)
Q Consensus 250 grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~pkqf 329 (422)
+++|.+++|+|+.++++|.+.++.+..+.+..+.+||+.++. +|+++.++.+.+-.||-.. .
T Consensus 418 ~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~G~~~~~~----------------~y~~~~~~~~~~~~~n~~~--~ 479 (571)
T PRK10369 418 VQLPALLAHAGVLLFAAGIVVSSVSRQEISLNLQPGQQVTLA----------------GYTFRFERLDLQAKGNYTS--E 479 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccceeEEEEECCCCcEEEe----------------cEEEEEeeeeeccCCCcee--E
Confidence 579999999999999999999999999999999999998763 2588888887765555443 3
Q ss_pred EEEEEEEecCCCee
Q 014569 330 HSDLSLFDIGGKEV 343 (422)
Q Consensus 330 ~SdLsI~d~~G~ev 343 (422)
+.++++.+ ||+++
T Consensus 480 ~a~~~v~~-~g~~~ 492 (571)
T PRK10369 480 KAIIALFR-HQQRI 492 (571)
T ss_pred EEEEEEEE-CCEEE
Confidence 47777765 56543
No 5
>TIGR03145 cyt_nit_nrfE cytochrome c nitrate reductase biogenesis protein NrfE. Members of this protein family closely resemble the CcmF protein of the CcmABCDEFGH system, or system I, for c-type cytochrome biogenesis (GenProp0678). Members are found, as a rule, next to closely related paralogs of CcmG and CcmH and always located near other genes associated with the cytochrome c nitrite reductase enzyme complex. As a rule, members are found in species that also encode bona fide members of the CcmF, CcmG, and CcmH families.
Probab=97.21 E-value=0.0024 Score=70.23 Aligned_cols=78 Identities=13% Similarity=0.061 Sum_probs=62.5
Q ss_pred ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 014569 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (422)
Q Consensus 246 KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~ 325 (422)
|...+++|.+++|+|+.++++|.+.++.+..+-+..+.+||+.+++ +|+++.++.+.+-.||.+
T Consensus 478 ~~~~~~~G~~laH~Gval~~~Gi~~ss~~~~e~~~~l~~Ge~~~~~----------------~y~~~~~~~~~~~~pn~~ 541 (628)
T TIGR03145 478 TLKLRQLGMVLAHLGVAICAIGAIMVSYFGSEIGVRLAPQQQQPLG----------------GYEFRYQGFENVIGPNYT 541 (628)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHhccccceeEEEECCCCeEEEc----------------CEEEEEeeceecCCCCce
Confidence 3445789999999999999999999999999999999999998763 257888888777666655
Q ss_pred ceeeEEEEEEEecCCCe
Q 014569 326 VKQFHSDLSLFDIGGKE 342 (422)
Q Consensus 326 pkqf~SdLsI~d~~G~e 342 (422)
. .+.++++.+ ||++
T Consensus 542 ~--~~a~~~v~~-~g~~ 555 (628)
T TIGR03145 542 A--EQANFSVTK-NGKI 555 (628)
T ss_pred e--EEEEEEEEE-CCEE
Confidence 4 346788876 5654
No 6
>TIGR00353 nrfE c-type cytochrome biogenesis protein CcmF. The product of this gene is required for the biogenesis of C-type cytochromes. This gene is thought to have eleven transmembrane helices. Disruption of this gene in Paracoccus denitrificans, encoding a putative transporter, results in formation of an unstable apocytochrome c and deficiency in siderophore production.
Probab=96.39 E-value=0.011 Score=64.50 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=63.4
Q ss_pred ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEEEecCCC
Q 014569 246 KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMDYYDSGE 325 (422)
Q Consensus 246 KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ieyy~~G~ 325 (422)
|...+++|.+++|+|+.++++|.+.++.+..+....+.+||+.+++ +|+++.++.+.+..||.+
T Consensus 421 ~~~~~~~g~~laH~Gval~~~Gi~~ss~~~~e~~~~L~pGet~~~~----------------~y~~~y~~~~~~~gpn~~ 484 (576)
T TIGR00353 421 KIKRSQWGMLLAHLGVALTAAGIVFSQNFSVEIDVRLKPGQSVTLG----------------GYTFRFRCVDLEAGPNYT 484 (576)
T ss_pred cCChhhhhhhhhHHHHHHHHHHHHHHcccceeEEEEECCCCcEEEc----------------CEEEEEeeeeecCCCCce
Confidence 3445789999999999999999999999999999999999998763 268899999887777665
Q ss_pred ceeeEEEEEEEecCCCee
Q 014569 326 VKQFHSDLSLFDIGGKEV 343 (422)
Q Consensus 326 pkqf~SdLsI~d~~G~ev 343 (422)
..+ .++++.+ ||+++
T Consensus 485 a~~--a~~~V~k-~g~~v 499 (576)
T TIGR00353 485 GEK--AIIDVTK-DGQPE 499 (576)
T ss_pred EEE--EEEEEEE-CCEEE
Confidence 443 6677765 66543
No 7
>COG1138 CcmF Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=93.06 E-value=0.2 Score=55.26 Aligned_cols=84 Identities=14% Similarity=0.152 Sum_probs=61.9
Q ss_pred eEEEE-ccccccchhhHHHHHHHHHHHhhhceecceeEEEEEEeCCceeeeccccCCCCCcCCCCCCcceEEEEccEEEE
Q 014569 241 SLYAF-KGLVGRFAPIGVHLAMLLIMAGGTLSATGSFRGSVTVPQGLNFVVGDVLGPNGFLSTPTDAFSTEVHVNKFYMD 319 (422)
Q Consensus 241 ~lyA~-KG~~grlGpilvHlslIlIL~Gallg~l~Gf~g~~~l~eGe~~~i~~~~~~g~~~~~~p~~lpfsVrLn~F~Ie 319 (422)
.+++. +...+.+|..+.|++++++++|++.+..++.+-.+.+++|++..+.+ ++++++|++++
T Consensus 480 ~~~~~~~~~~s~~g~~LaH~Gv~l~~~Gi~~s~~~~~E~~v~l~~G~~~~l~~----------------y~~~~~~~~~~ 543 (648)
T COG1138 480 VIRGVVALKRSAWGMVLAHLGVALIAVGIAMSSTYRYEREVRLRPGQSVTLAG----------------YTFTLDDVDIA 543 (648)
T ss_pred chhhhccCChhHHHHHHHHhhHHHhhhhhheehhhhheeeEEecCCceEEeee----------------EEEEEeeeeec
Confidence 34443 33446799999999999999999999999999999999999987742 57899999887
Q ss_pred EecCCCceeeEEEEEEEecCCCee
Q 014569 320 YYDSGEVKQFHSDLSLFDIGGKEV 343 (422)
Q Consensus 320 yy~~G~pkqf~SdLsI~d~~G~ev 343 (422)
-.||-.- -..++++.+ +|+|+
T Consensus 544 ~gpny~~--~~a~~~~~~-~~~~~ 564 (648)
T COG1138 544 QGPNYTA--EVAIVSVTR-NGREI 564 (648)
T ss_pred cCCceee--eeeEEEEee-ccchh
Confidence 6664221 123344443 56554
No 8
>PF11669 WBP-1: WW domain-binding protein 1; InterPro: IPR021684 This family of proteins represents WBP-1, a ligand of the WW domain of Yes-associated protein. This protein has a proline-rich domain. WBP-1 does not bind to the SH3 domain [].
Probab=41.71 E-value=18 Score=30.94 Aligned_cols=25 Identities=16% Similarity=0.176 Sum_probs=18.0
Q ss_pred cccccHHHHHHHHHHHHHhhhhhhc
Q 014569 162 HMFSSPIFLGLLVMMGLSLMACTYT 186 (422)
Q Consensus 162 ~VYsSwWFl~LL~LL~lsL~~CT~~ 186 (422)
..|..|||.++++++.+-..+|...
T Consensus 17 ~~~~~w~FWlv~~liill~c~c~~~ 41 (102)
T PF11669_consen 17 YYYELWYFWLVWVLIILLSCCCACR 41 (102)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688899999877776655566553
No 9
>TIGR00351 narI respiratory nitrate reductase, gamma subunit. Involved in anerobic respiration the gene product catalyzes the reaction (reduced acceptor + NO3- = Acceptor + nitrite). Another possible role_id for this gene product is in nitrogen fixation (Role_id:160).
Probab=40.25 E-value=17 Score=35.29 Aligned_cols=27 Identities=19% Similarity=0.138 Sum_probs=23.5
Q ss_pred cccchhhHHHHHHHHHHHhhhceecce
Q 014569 249 VGRFAPIGVHLAMLLIMAGGTLSATGS 275 (422)
Q Consensus 249 ~grlGpilvHlslIlIL~Gallg~l~G 275 (422)
+-+||..++|.|++++++|.+.|-+.-
T Consensus 46 ~l~~gs~lFH~gil~v~~gH~~g~l~p 72 (224)
T TIGR00351 46 GMNLASNLFHIGILGIFVGHFFGMLTP 72 (224)
T ss_pred cHHhhHHHHHHHHHHHHHHHHHHhccc
Confidence 458999999999999999999976653
No 10
>cd02850 Cellulase_N_term Cellulase N-terminus domain. Cellulases are O-glycosyl hydrolases (GHs) that hydrolyze beta 1-4 glucosidic bonds in cellulose. They are usually catagorized into either exoglucanases which sequentially release sugar units from the cellulose chain and endoglucanases which also attack the chain internally. The N-terminus of cellulase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=38.29 E-value=39 Score=27.56 Aligned_cols=35 Identities=20% Similarity=0.097 Sum_probs=25.9
Q ss_pred EEEecCCCeeEEEEEEeCcceEECCeEEEecCCCC
Q 014569 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSF 368 (422)
Q Consensus 334 sI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~ 368 (422)
.+.|.+|+.+.+.+++...+=...|.++|+.||..
T Consensus 30 ~l~d~~g~~V~~g~~~~~~~~~~sg~~~~~~DFS~ 64 (86)
T cd02850 30 ELKNADGVVVATGTTTPKGVDADSGDNVHIIDFSS 64 (86)
T ss_pred EEEcCCCCEEEEeecccccccccccCeEEEEEcCC
Confidence 44688899999888875432245688999999963
No 11
>cd00255 nidG2 Nidogen, G2 domain; Nidogen is an important component of the basement membrane, an extracellular sheet-like matrix. Nidogen is a multifunctional protein that interacts with many other basement membrane proteins, like collagen, perlecan, lamin, and has a potential role in the assembly and connection of networks. Nidogen consists of 3 globular domains (G1-G3), G3 is the lamin-binding domain, while G2 binds collagen IV and perlecan. Also found in hemicentin, a protein which functions at various cell-cell and cell-matrix junctions and might assist in refining broad regions of cell contact into oriented, line-shaped junctions. Nidogen G2 consists of an N-terminal EGF-like domain (excluded from this alignment model) and an 11-stranded beta-barrel with a central helix, a topology that exhibits high structural similarity to the green flourescent proteins of Cnidaria.
Probab=33.89 E-value=4.6e+02 Score=25.78 Aligned_cols=122 Identities=17% Similarity=0.169 Sum_probs=67.1
Q ss_pred CeEEEeecceEEEEccccccchhhHHHHHHHHHHHhhhceecc------------------eeEEEEEEeC-Cceeeecc
Q 014569 232 GYEVFLKGPSLYAFKGLVGRFAPIGVHLAMLLIMAGGTLSATG------------------SFRGSVTVPQ-GLNFVVGD 292 (422)
Q Consensus 232 gy~v~~~~~~lyA~KG~~grlGpilvHlslIlIL~Gallg~l~------------------Gf~g~~~l~e-Ge~~~i~~ 292 (422)
.|-|-.++....|--.+-..+|+-+ ..+.-+|+.+|.++ -.+.++.... ||.+.+..
T Consensus 30 syVv~~dGR~ytais~ip~~~G~~L----~~l~~ig~~igWlFA~e~~~~~NGfslTGG~F~~~~~v~F~~~ge~l~I~Q 105 (224)
T cd00255 30 SYVVTSDGRAYTAISNIPESLGPSL----RPLAPIGGTIGWLFALEQGGAKNGFSLTGGEFTRQAEVTFYTGGEKLRITQ 105 (224)
T ss_pred EEEEecCCeEEEEEecCChHhchhh----hhhhhhcCceeeEEEeecCCccCcEeccCceEEEEEEEEEcCCCEEEEEEE
Confidence 3555555555556544444455544 44555566555543 3344555556 88877753
Q ss_pred ccC--------------CCCCcCCCCCCcceEEEEccEEEEEecC--CCceeeEEEEEEEecCCCeeEEEEEEeCcceEE
Q 014569 293 VLG--------------PNGFLSTPTDAFSTEVHVNKFYMDYYDS--GEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRY 356 (422)
Q Consensus 293 ~~~--------------~g~~~~~~p~~lpfsVrLn~F~Ieyy~~--G~pkqf~SdLsI~d~~G~ev~~~tIsVN~PL~y 356 (422)
.++ +|. +-.+|. +.+|++.||.-+|.-. |....+.|..-.+++. .+.. +.+++.
T Consensus 106 ~~~GlD~~~~L~~~~~i~G~-vP~i~~--~a~v~i~dY~E~Y~~t~pg~l~s~str~~~v~~~-~~~~------~~~y~~ 175 (224)
T cd00255 106 VARGLDSHGHLLLDTVISGR-VPQVPA--GATVHIEDYTELYHYTGPGVLTSSSTREYTVDEG-GESQ------TLSYQW 175 (224)
T ss_pred EEeccCccCeEEEEEEEEee-cCCCCC--CCeEEeCCCeeeEEEcCCCEEEEEEeeEEEEecC-CCce------EEeEEe
Confidence 221 222 223444 4599999999998653 5677777766556533 2322 334444
Q ss_pred CCeEEEecCCC
Q 014569 357 GGITIYQTDWS 367 (422)
Q Consensus 357 ~Gvt~YQts~g 367 (422)
+---.|+.-.+
T Consensus 176 ~Q~I~y~~c~~ 186 (224)
T cd00255 176 NQTITYEECPH 186 (224)
T ss_pred eeEEEEeecCC
Confidence 44555665554
No 12
>COG2181 NarI Nitrate reductase gamma subunit [Energy production and conversion]
Probab=32.05 E-value=30 Score=33.96 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.9
Q ss_pred ccchhhHHHHHHHHHHHhhhceecc
Q 014569 250 GRFAPIGVHLAMLLIMAGGTLSATG 274 (422)
Q Consensus 250 grlGpilvHlslIlIL~Gallg~l~ 274 (422)
-++|+.++|.|++++++|..+|-+.
T Consensus 46 L~~gs~lFH~GIl~v~~gH~~gll~ 70 (228)
T COG2181 46 LWIGSNLFHIGILLVLLGHAIGLLT 70 (228)
T ss_pred eeecCchHHHHHHHHHHHHHhheeC
Confidence 4799999999999999999998875
No 13
>PF07474 G2F: G2F domain; InterPro: IPR006605 Basement membranes are sheet-like extracellular matrices found at the basal surfaces of epithelia and condensed mesenchyma. By preventing cell mixing and providing a cell-adhesive substrate, they play crucial roles in tissue development and function. Basement menbranes are composed of an evolutionarily ancient set of large glycoproteins, which includes members of the laminin family, collagen IV, perlecan and nidogen/entactin. Nidogen/entactin is an important basement membrane component, which promotes cell attachment, neutrophil chemotaxis, trophoblast outgrowth, and angiogenesis. It consists of three globular regions, G1-G3. G1 and G2 are connected by a thread-like structure, whereas that between G2 and G3 is rod-like [, ]. The nidogen G2 region binds to collagen IV and perlecan. The nidogen G2 structure is composed of two domains, an N-terminal EGF-like domain and a much larger beta-barrel domain of ~230 residues. The nidogen G2 beta-barrel consists of an 11-stranded beta-barrel of complex topology, the interior of which is traversed by the hydrophobic, predominantly alpha helical segment connecting strands C and D. The N-terminal half of the barrel comprises two beta-meanders (strands A-C and D-F) linked by the buried alpha-helical segment. The polypeptide chain then crosses the bottom of the barrel and forms a five-stranded Greek key motif in the C- terminal half of the domain. Helix alpha3 caps the top of the barrel and forms the interface to the EGF-like domain. The nidogen G2 beta-barrel domain has unexpected structural similarity to green fluorescent protein, suggesting that they derive from a common ancestor. A large surface patch on the barrel surface is strikingly conserved in all metazoan nidogens. Site-directed mutagenesis demonstrates that the conserved residues in the conserved patch are involved in the binding of perlecan, and possibly also of collagen IV [].; PDB: 1GL4_A 1H4U_A.
Probab=30.38 E-value=4.7e+02 Score=25.05 Aligned_cols=113 Identities=13% Similarity=0.179 Sum_probs=61.7
Q ss_pred EEEccccccchhhHHHHHHHHHHHhhhc--------------eecceeEEEEEEeCCceeeecccc---CCCCC------
Q 014569 243 YAFKGLVGRFAPIGVHLAMLLIMAGGTL--------------SATGSFRGSVTVPQGLNFVVGDVL---GPNGF------ 299 (422)
Q Consensus 243 yA~KG~~grlGpilvHlslIlIL~Gall--------------g~l~Gf~g~~~l~eGe~~~i~~~~---~~g~~------ 299 (422)
.|-..+-..+|+.+.=+..++-.+|.+. |+.+-.+.++.-..||.+.+.... +..+.
T Consensus 43 taIs~IP~~~G~~l~~L~~ig~~igWlfA~e~~~a~NGfslTGG~F~~~s~v~F~tGe~l~itq~~~GlD~~~~L~~d~~ 122 (192)
T PF07474_consen 43 TAISNIPPSVGPSLRPLVPIGGPIGWLFAKEQGGAQNGFSLTGGEFNRESEVEFATGERLTITQTARGLDSDGYLLLDTV 122 (192)
T ss_dssp EEEES--CCCCGGGTT-THHHHHHHHHT-EE-TT---HHHHHTTEEEEEEEEEESSS--EEEEEEEEEE-TTS-EEEEEE
T ss_pred EEeecCChHHhhhhhHHHHhhhheeeeEEeccCCccCceeeeccEEEEEEEEEEeCCCEEEEEEEecccCCCCcEEEEEE
Confidence 4445555668888777777777777544 334666777888899988875321 11111
Q ss_pred ----cCCCCCCcceEEEEccEEEEEec--CCCceeeEEEEEEEecCCCeeEEEEEEeCcceEECC
Q 014569 300 ----LSTPTDAFSTEVHVNKFYMDYYD--SGEVKQFHSDLSLFDIGGKEVMRKTISVNDPLRYGG 358 (422)
Q Consensus 300 ----~~~~p~~lpfsVrLn~F~Ieyy~--~G~pkqf~SdLsI~d~~G~ev~~~tIsVN~PL~y~G 358 (422)
.-.+|. +.+|+++||+-+|.. .|......+.--.++.+ .+...-.-.+||-..|+.
T Consensus 123 i~G~vP~i~~--~a~v~i~dy~E~Y~~tgpg~l~s~Str~~~~~~~-~~~~~~~y~~~qtI~Y~~ 184 (192)
T PF07474_consen 123 ISGQVPQIPA--GADVHIQDYTEEYVQTGPGQLTSSSTREFTVDGG-GSSRTISYRWNQTITYDE 184 (192)
T ss_dssp EEEEE----T--T-EEE---EEEEEEEE-TTEEEEEEEEEEEEE-----EEEEEEEEEEEEE---
T ss_pred EeccCCCCCC--CCeEEeCChhheeEEecCCcEEEEEEEEEEEcCC-CceEEEEEEEEEEEEEcc
Confidence 112344 459999999999854 57777777776666743 345677778888888764
No 14
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=28.53 E-value=48 Score=34.91 Aligned_cols=35 Identities=20% Similarity=0.205 Sum_probs=30.2
Q ss_pred EEEccccccchhhHHHHHHHHHHHhhhceecceeE
Q 014569 243 YAFKGLVGRFAPIGVHLAMLLIMAGGTLSATGSFR 277 (422)
Q Consensus 243 yA~KG~~grlGpilvHlslIlIL~Gallg~l~Gf~ 277 (422)
|-.++.|.|++..+++.-|+|+++|+++|.+.+-.
T Consensus 293 ~r~r~~~~r~~~c~~~~i~~lL~ig~~~gFv~Att 327 (387)
T PF12751_consen 293 YRQRSWFSRFASCIYLSILLLLVIGFAIGFVFATT 327 (387)
T ss_pred hccccHHhhhhHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 45688999999999999999999999999887544
No 15
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=28.11 E-value=30 Score=25.59 Aligned_cols=33 Identities=12% Similarity=0.035 Sum_probs=22.3
Q ss_pred chHHHHHHHhcChhHHHH---HHHHHHHHhheeEEe
Q 014569 95 RLPRRVLAALSNLPLAIG---EMAAIAALMALGTAI 127 (422)
Q Consensus 95 ~~~kki~~~LsSlkLAI~---LLllIai~SiiGT~I 127 (422)
..++++|+.|..-|+|++ +++++.+++++|.++
T Consensus 3 s~~~~~~~~f~~nk~a~~gl~il~~~vl~ai~~p~~ 38 (56)
T PF12911_consen 3 SPWKDAWRRFRRNKLAVIGLIILLILVLLAIFAPFI 38 (56)
T ss_pred CHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHc
Confidence 456888888888887654 455555666666544
No 16
>CHL00177 ccs1 c-type cytochrome biogenensis protein; Validated
Probab=24.34 E-value=2.1e+02 Score=30.55 Aligned_cols=69 Identities=17% Similarity=0.334 Sum_probs=47.2
Q ss_pred eeeEEEEEEEecCCCeeEEEEEEeCcceEECCeEEEecCC-CCceEEEEECCCcc----------eEEeceeeccCCCce
Q 014569 327 KQFHSDLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDW-SFSALQVLKNDEGP----------FNLAMAPLKVNGDKK 395 (422)
Q Consensus 327 kqf~SdLsI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~-g~~~l~v~~~~~~~----------~~lp~~~~~~~g~~~ 395 (422)
+++...+.++|++|+.+ ..+..|.|...+|+++--.+. ...+++++.|++.+ +.+-|..+. ..+
T Consensus 318 ~d~~~~~~~y~~~g~~~--~~~~~g~~~~~~~~~~~~~~~~~~TGLqi~~dPG~~~vy~G~~ll~lG~~~sy~~---~~~ 392 (426)
T CHL00177 318 KDLQGKISLYDNNGNFL--GILELNEPINLNNTPITLIEIISSTGLQIKSDPGIPIIYVGFFLLMISILISYIS---YSQ 392 (426)
T ss_pred ecCCcEEEEEcCCCcEe--eEEecCCcceecceEEEEEEEeecceEEEEcCCCCeehHHHHHHHHHHHheeeec---ceE
Confidence 33445578888777653 457788999999976665554 44789999999865 234554444 378
Q ss_pred EEEEe
Q 014569 396 LFGTF 400 (422)
Q Consensus 396 ~w~~~ 400 (422)
+|...
T Consensus 393 iw~~~ 397 (426)
T CHL00177 393 IWLIQ 397 (426)
T ss_pred EEEEE
Confidence 99766
No 17
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=23.89 E-value=90 Score=22.18 Aligned_cols=34 Identities=9% Similarity=0.262 Sum_probs=27.6
Q ss_pred ccccchHHHHHHHhcChhHHHHHHHHHHHHhhee
Q 014569 91 GLVKRLPRRVLAALSNLPLAIGEMAAIAALMALG 124 (422)
Q Consensus 91 ~~~~~~~kki~~~LsSlkLAI~LLllIai~SiiG 124 (422)
.++++++..+-+|..+..+...|+++..+..=+|
T Consensus 7 ~fieryfddiqkwirnit~cfal~vv~lvslwig 40 (40)
T PF13124_consen 7 AFIERYFDDIQKWIRNITFCFALLVVVLVSLWIG 40 (40)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3577888999999999999999988877765554
No 18
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=23.40 E-value=52 Score=34.02 Aligned_cols=23 Identities=9% Similarity=0.257 Sum_probs=13.7
Q ss_pred cccccHHHHHHHHHHHHHhhhhh
Q 014569 162 HMFSSPIFLGLLVMMGLSLMACT 184 (422)
Q Consensus 162 ~VYsSwWFl~LL~LL~lsL~~CT 184 (422)
.|=+|-|+..+++++++-++.+.
T Consensus 36 ~ie~sl~~~~~~~~~~~~~~~~~ 58 (398)
T PRK10747 36 NIETSVTGLAIILILAMVVLFAI 58 (398)
T ss_pred EEEehHHHHHHHHHHHHHHHHHH
Confidence 56677777776655554444443
No 19
>PRK10617 cytochrome c-type protein NapC; Provisional
Probab=22.50 E-value=75 Score=30.55 Aligned_cols=10 Identities=20% Similarity=0.169 Sum_probs=7.7
Q ss_pred hHHHHHHHhc
Q 014569 96 LPRRVLAALS 105 (422)
Q Consensus 96 ~~kki~~~Ls 105 (422)
+++++|++|.
T Consensus 10 ~~~~~~~~~~ 19 (200)
T PRK10617 10 LIKRLWKWWR 19 (200)
T ss_pred HHHHHHHHHH
Confidence 5688888874
No 20
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=22.40 E-value=4.3e+02 Score=22.30 Aligned_cols=58 Identities=17% Similarity=0.241 Sum_probs=36.4
Q ss_pred EEEEccEEEEEecCCCc-eeeEE---EEEEEecCCCeeEEEEEEeCcceEECCeEEEecCCCC
Q 014569 310 EVHVNKFYMDYYDSGEV-KQFHS---DLSLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSF 368 (422)
Q Consensus 310 sVrLn~F~Ieyy~~G~p-kqf~S---dLsI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~ 368 (422)
.-++.+|++++-.||.- ..+.. ...+.. +.......++..+.|+..+-++|+.+++..
T Consensus 72 ~~~~~~~~i~~s~dg~~W~~~~~~~~~~~~~~-~~~~~~~~~~~l~~pv~aRyvRl~~~~~~~ 133 (143)
T cd00057 72 SEWVTSYKVQYSLDGETWTTYKDKGEEKVFTG-NSDGSTPVTNDFPPPIVARYIRILPTTWNG 133 (143)
T ss_pred cCeeEEEEEEEECCCCCEeEEEcCCcEEEEeC-CcCCCeEEEEeCCCCEEEEEEEEEEeecCC
Confidence 44678899998888742 22221 011221 111124577888899999999999998753
No 21
>PF02665 Nitrate_red_gam: Nitrate reductase gamma subunit; InterPro: IPR003816 The nitrate reductase enzyme (1.7.99.4 from EC) is composed of three subunits; an alpha, a beta and two gamma. It is the second nitrate reductase enzyme which it can substitute for the NRA enzyme in Escherichia coli allowing it to use nitrate as an electron acceptor during anoerobic respiration []. Nitrate reductase gamma subunit resembles cytochrome b and transfers electrons from quinones to the beta subunit [].; GO: 0008940 nitrate reductase activity, 0055114 oxidation-reduction process, 0009325 nitrate reductase complex; PDB: 1Y5L_C 3IR5_C 1Y5I_C 1Y5N_C 1Y4Z_C 3IR6_C 3IR7_C 1SIW_C 3EGW_C 1Q16_C.
Probab=22.02 E-value=51 Score=31.82 Aligned_cols=24 Identities=17% Similarity=0.239 Sum_probs=21.2
Q ss_pred ccchhhHHHHHHHHHHHhhhceec
Q 014569 250 GRFAPIGVHLAMLLIMAGGTLSAT 273 (422)
Q Consensus 250 grlGpilvHlslIlIL~Gallg~l 273 (422)
-++|.+++|.|++++++|.+.+.+
T Consensus 45 L~~~s~lfH~Gil~v~~gH~~gll 68 (222)
T PF02665_consen 45 LWWGSYLFHWGILLVFFGHVVGLL 68 (222)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHHHHHHHh
Confidence 469999999999999999887755
No 22
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=21.11 E-value=54 Score=33.97 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=12.3
Q ss_pred cccccHHHHHHHHHHHHHhhhh
Q 014569 162 HMFSSPIFLGLLVMMGLSLMAC 183 (422)
Q Consensus 162 ~VYsSwWFl~LL~LL~lsL~~C 183 (422)
.|=.|.|+..+++++++-++.+
T Consensus 36 ~ie~s~~~~~~~~~~~~~~~~~ 57 (409)
T TIGR00540 36 IIEMSITGLAIFFIIALAIIFA 57 (409)
T ss_pred EEEeeHHHHHHHHHHHHHHHHH
Confidence 4667777766655444443333
Done!