Query 014569
Match_columns 422
No_of_seqs 179 out of 843
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 13:56:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014569.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/014569hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1gl4_A Nidogen-1, entactin; im 20.9 3E+02 0.01 26.5 8.2 117 241-359 87-236 (285)
2 3lqz_A HLA class II histocompa 15.1 1.4E+02 0.0046 26.2 4.0 46 348-402 1-46 (181)
3 2c6a_A Ubiquitin-protein ligas 13.0 51 0.0017 23.5 0.4 18 23-40 20-37 (46)
4 1jb0_X Photosystem I subunit P 12.2 1.2E+02 0.004 20.3 1.9 21 160-183 7-27 (35)
5 3u2g_A S-layer protein MA0829; 10.6 7.4E+02 0.025 23.8 7.9 35 309-352 124-158 (286)
6 3nol_A Glutamine cyclotransfer 9.9 8.4E+02 0.029 22.8 8.0 46 330-377 64-114 (262)
7 2iqi_A Hypothetical protein XC 9.2 5.5E+02 0.019 22.1 6.1 47 309-355 103-151 (192)
8 3nok_A Glutaminyl cyclase; bet 9.1 7.4E+02 0.025 23.4 7.3 42 333-377 77-123 (268)
9 3j1r_A Archaeal adhesion filam 8.8 2.2E+02 0.0075 17.8 2.2 15 108-122 4-18 (26)
10 3npp_A PFAM DUF1093 family pro 8.5 5.4E+02 0.018 20.0 5.1 29 327-356 26-54 (87)
No 1
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A
Probab=20.91 E-value=3e+02 Score=26.53 Aligned_cols=117 Identities=11% Similarity=0.032 Sum_probs=64.0
Q ss_pred eEEEEccccccchhhHHHHHHHHHHHhhhce--------------ecceeEEEEEEeCC-ceeeecccc---CC-CCC--
Q 014569 241 SLYAFKGLVGRFAPIGVHLAMLLIMAGGTLS--------------ATGSFRGSVTVPQG-LNFVVGDVL---GP-NGF-- 299 (422)
Q Consensus 241 ~lyA~KG~~grlGpilvHlslIlIL~Gallg--------------~l~Gf~g~~~l~eG-e~~~i~~~~---~~-g~~-- 299 (422)
...|-..+-..+|+-+.=+.-+.-.+|.+.. +.+-.+.++.-..| |.+.+...+ +. |.+
T Consensus 87 ~ytais~Ip~~~G~~l~~L~~ig~~igWlfA~e~~~~~NGfslTgG~F~r~s~v~F~~g~e~l~i~q~~~GlD~~g~L~~ 166 (285)
T 1gl4_A 87 SYTAISTIPETVGYSLLPLAPIGGIIGWMFAVEQDGFKNGFSITGGEFTRQAEVTFLGHPGKLVLKQQFSGIDEHGHLTI 166 (285)
T ss_dssp EEEEEESCCHHHHGGGTTCTHHHHHHHHHTCEECTTCCCHHHHHTTEEEEEEEEEETTSSSCEEEEEEEECBCTTSCEEC
T ss_pred EEEEeccCChhhchhhhhhhhhccceeeeeecccCccccceEeeCceEEEEEEEEEcCCCeEEEEEEEEEccCcCCcEEE
Confidence 3444555556677766666666666665442 23344455555566 666664321 11 110
Q ss_pred -------cCCCCCCcceEEEEccEEEEEe-cCCCceeeEEEEEEEecC---C-CeeEEEEEEeCcceEECCe
Q 014569 300 -------LSTPTDAFSTEVHVNKFYMDYY-DSGEVKQFHSDLSLFDIG---G-KEVMRKTISVNDPLRYGGI 359 (422)
Q Consensus 300 -------~~~~p~~lpfsVrLn~F~Ieyy-~~G~pkqf~SdLsI~d~~---G-~ev~~~tIsVN~PL~y~Gv 359 (422)
+-.++. +.+|++.||.-+|. ..|....+.+.--.++.+ | .....-.-.+||-..|++-
T Consensus 167 ~~~i~G~vP~i~~--~~~v~i~dy~E~Y~~~~g~l~s~str~~~~~~~~~~g~~~~~~~~y~~~qtI~y~~c 236 (285)
T 1gl4_A 167 STELEGRVPQIPY--GASVHIEPYTELYHYSSSVITSSSTREYTVMEPDQDGAAPSHTHIYQWRQTITFQEC 236 (285)
T ss_dssp EEEEEEEECCCCT--TCEEECCCEEEEEEEETTEEEEEEEEEEEEECCSSTTCCCCEEEEEEEEEEEECCCC
T ss_pred EEEEeeecCCCCC--CCeeecCCcceEEEEcCCEEEEEeeeeEEeccccccCcccceeEeEEEeeEEEeccC
Confidence 113444 45999999999984 346666666664455532 2 1224555667777766543
No 2
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}
Probab=15.08 E-value=1.4e+02 Score=26.24 Aligned_cols=46 Identities=20% Similarity=0.182 Sum_probs=32.7
Q ss_pred EEeCcceEECCeEEEecCCCCceEEEEECCCcceEEeceeeccCCCceEEEEeec
Q 014569 348 ISVNDPLRYGGITIYQTDWSFSALQVLKNDEGPFNLAMAPLKVNGDKKLFGTFLP 402 (422)
Q Consensus 348 IsVN~PL~y~Gvt~YQts~g~~~l~v~~~~~~~~~lp~~~~~~~g~~~~w~~~~p 402 (422)
|..||-..| ..|||++-.-...+..+|++..+.+.+ +.+-|.-.+|
T Consensus 1 ~~~~~~~~~--~~~~~~~~~~g~~~~~~DGee~~~~D~-------~~~~~V~~~P 46 (181)
T 3lqz_A 1 IKADHVSTY--AAFVQTHRPTGEFMFEFDEDEMFYVDL-------DKKETVWHLE 46 (181)
T ss_dssp CCCSEEEEE--EEEEESSSSCEEEEEEETTEEEEEEET-------TTTEEEESSH
T ss_pred CcccceEEE--EEEEeCCCCCeeEEEEECCceEEEEEC-------CCCeEEEcCc
Confidence 346888888 999998765455778899998777766 2345555555
No 3
>2c6a_A Ubiquitin-protein ligase E3 MDM2; zinc finger, human MDM2, phosphorylation, alternative splicing, metal-binding, nuclear protein, proto- oncogene; NMR {Homo sapiens} SCOP: g.41.11.1 PDB: 2c6b_A
Probab=12.99 E-value=51 Score=23.53 Aligned_cols=18 Identities=39% Similarity=0.702 Sum_probs=15.5
Q ss_pred cccCcccccccccccccc
Q 014569 23 STFNPQLHTLFNRCITLS 40 (422)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~ 40 (422)
.+|||-+|.-|+||-.|+
T Consensus 20 ~~~N~Pl~r~C~rCw~LR 37 (46)
T 2c6a_A 20 NEMNPPLPSHCNRCWALR 37 (46)
T ss_dssp CCEECSSCSSCTTTCCCC
T ss_pred cccCCCccchhhHHHhhc
Confidence 389999999999998664
No 4
>1jb0_X Photosystem I subunit PSAX; membrane protein, multiprotein-pigment complex, photosynthes; HET: CL1 PQN BCR LHG LMG; 2.50A {Synechococcus elongatus} SCOP: f.23.20.1 PDB: 3pcq_X*
Probab=12.21 E-value=1.2e+02 Score=20.28 Aligned_cols=21 Identities=5% Similarity=0.200 Sum_probs=14.4
Q ss_pred CCcccccHHHHHHHHHHHHHhhhh
Q 014569 160 FDHMFSSPIFLGLLVMMGLSLMAC 183 (422)
Q Consensus 160 L~~VYsSwWFl~LL~LL~lsL~~C 183 (422)
...+|++-|.+ +||++|.+..
T Consensus 7 p~y~frt~Wal---llLaINflVA 27 (35)
T 1jb0_X 7 PTYAFRTFWAV---LLLAINFLVA 27 (35)
T ss_dssp CCCCHHHHHHH---HHHHHHHHHH
T ss_pred CCccHHHHHHH---HHHHHHHHHH
Confidence 35688899987 4566666554
No 5
>3u2g_A S-layer protein MA0829; DUF1608 domain, cell envelop, surface layer, unknow function, structural protein; HET: CIT; 2.30A {Methanosarcina acetivorans} PDB: 3u2h_A
Probab=10.56 E-value=7.4e+02 Score=23.82 Aligned_cols=35 Identities=23% Similarity=0.223 Sum_probs=25.6
Q ss_pred eEEEEccEEEEEecCCCceeeEEEEEEEecCCCeeEEEEEEeCc
Q 014569 309 TEVHVNKFYMDYYDSGEVKQFHSDLSLFDIGGKEVMRKTISVND 352 (422)
Q Consensus 309 fsVrLn~F~Ieyy~~G~pkqf~SdLsI~d~~G~ev~~~tIsVN~ 352 (422)
|+++++... .+|. ...|++.. ||+++..+.|+++.
T Consensus 124 Y~L~i~~Id----~dG~----kV~leL~K-DG~~Vds~vv~~~~ 158 (286)
T 3u2g_A 124 YAIEAKQVD----VDGE----KVWLEFTK-DGEFVDDEIISVST 158 (286)
T ss_dssp EEEEEEEEC----TTSS----EEEEEEEE-TTEEEEEEEEECSS
T ss_pred eEEEEEEEe----CCCC----EEEEEEEe-CCcEeeEEEEccCC
Confidence 678877664 3555 46677765 89999999999884
No 6
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=9.92 E-value=8.4e+02 Score=22.79 Aligned_cols=46 Identities=15% Similarity=0.102 Sum_probs=28.8
Q ss_pred EEEEEEEecCCCeeEEEEEEeCc-c----eEECCeEEEecCCCCceEEEEECC
Q 014569 330 HSDLSLFDIGGKEVMRKTISVND-P----LRYGGITIYQTDWSFSALQVLKND 377 (422)
Q Consensus 330 ~SdLsI~d~~G~ev~~~tIsVN~-P----L~y~Gvt~YQts~g~~~l~v~~~~ 377 (422)
.|.|.++|.+-+++.+ ++.+.. + +...|-++||..|.-.-+. ++|.
T Consensus 64 ~S~v~~vD~~Tgkv~~-~~~l~~~~FgeGit~~g~~ly~ltw~~~~v~-v~D~ 114 (262)
T 3nol_A 64 RSSIRKVDIESGKTLQ-QIELGKRYFGEGISDWKDKIVGLTWKNGLGF-VWNI 114 (262)
T ss_dssp EEEEEEECTTTCCEEE-EEECCTTCCEEEEEEETTEEEEEESSSSEEE-EEET
T ss_pred CceEEEEECCCCcEEE-EEecCCccceeEEEEeCCEEEEEEeeCCEEE-EEEC
Confidence 3778888876444433 445543 2 4667889999999754433 4443
No 7
>2iqi_A Hypothetical protein XCC0632; structural genomics, PSI-2, protein structure initiative; 2.70A {Xanthomonas campestris PV} SCOP: c.51.6.2
Probab=9.18 E-value=5.5e+02 Score=22.09 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=29.8
Q ss_pred eEEEEccEEEEEecC-CCceeeEEEEEEEec-CCCeeEEEEEEeCcceE
Q 014569 309 TEVHVNKFYMDYYDS-GEVKQFHSDLSLFDI-GGKEVMRKTISVNDPLR 355 (422)
Q Consensus 309 fsVrLn~F~Ieyy~~-G~pkqf~SdLsI~d~-~G~ev~~~tIsVN~PL~ 355 (422)
..++|++|+.+|..+ ...-...-+.++.+. +|+.+..+...+-.|+.
T Consensus 103 L~v~v~~F~~~~~~~~~~~a~v~~~~~L~~~~~~~~~~~~~f~~~~p~~ 151 (192)
T 2iqi_A 103 LAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSS 151 (192)
T ss_dssp EEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECS
T ss_pred EEEEeeeeEeeecCCCCCEEEEEEEEEEEeCCCCeEEEEEEEEEEeECC
Confidence 489999999998643 123345566667763 45445466666666653
No 8
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=9.14 E-value=7.4e+02 Score=23.37 Aligned_cols=42 Identities=17% Similarity=0.223 Sum_probs=26.6
Q ss_pred EEEEecCCCeeEEEEEEeCcc-----eEECCeEEEecCCCCceEEEEECC
Q 014569 333 LSLFDIGGKEVMRKTISVNDP-----LRYGGITIYQTDWSFSALQVLKND 377 (422)
Q Consensus 333 LsI~d~~G~ev~~~tIsVN~P-----L~y~Gvt~YQts~g~~~l~v~~~~ 377 (422)
|.++|.+.+++.+.. +... +...|-++||..|.-.-+ .++|.
T Consensus 77 v~~iD~~Tgkv~~~~--l~~~~FgeGit~~g~~Ly~ltw~~~~v-~V~D~ 123 (268)
T 3nok_A 77 LRQLSLESAQPVWME--RLGNIFAEGLASDGERLYQLTWTEGLL-FTWSG 123 (268)
T ss_dssp EEECCSSCSSCSEEE--ECTTCCEEEEEECSSCEEEEESSSCEE-EEEET
T ss_pred EEEEECCCCcEEeEE--CCCCcceeEEEEeCCEEEEEEccCCEE-EEEEC
Confidence 667776555554443 5443 677888999999975443 34454
No 9
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=8.75 E-value=2.2e+02 Score=17.82 Aligned_cols=15 Identities=27% Similarity=0.078 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHhh
Q 014569 108 PLAIGEMAAIAALMA 122 (422)
Q Consensus 108 kLAI~LLllIai~Si 122 (422)
-.|.+||++||++.+
T Consensus 4 iVA~~lLIviav~aa 18 (26)
T 3j1r_A 4 VIATLLLILIAVAAA 18 (26)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 357778888877654
No 10
>3npp_A PFAM DUF1093 family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.15A {Bacillus subtilis}
Probab=8.50 E-value=5.4e+02 Score=19.97 Aligned_cols=29 Identities=21% Similarity=0.194 Sum_probs=21.2
Q ss_pred eeeEEEEEEEecCCCeeEEEEEEeCcceEE
Q 014569 327 KQFHSDLSLFDIGGKEVMRKTISVNDPLRY 356 (422)
Q Consensus 327 kqf~SdLsI~d~~G~ev~~~tIsVN~PL~y 356 (422)
..|.-++...|++|++ +.-+...++||+=
T Consensus 26 ~~y~Y~l~~yde~G~~-k~l~f~~~~~l~~ 54 (87)
T 3npp_A 26 GGTEYTLDGYNASGKK-EEVTFFAGKELRK 54 (87)
T ss_dssp TEEEEEEEEECTTCCE-EEEEEEESSCCCT
T ss_pred CCEEEEEEEECCCCCE-EEEEEEcCCCCCC
Confidence 3588999999999865 4555666777653
Done!