Query 014569
Match_columns 422
No_of_seqs 179 out of 843
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 13:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014569.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014569hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1iaka2 d.19.1.1 (A:1-81) Clas 24.4 18 0.0013 27.0 2.2 27 358-385 10-37 (82)
2 d1uvqa2 d.19.1.1 (A:2-84) Clas 21.4 26 0.0019 26.1 2.6 27 358-385 11-38 (83)
3 d1y5ic1 f.21.3.1 (C:1-225) Res 15.8 25 0.0019 30.0 1.6 26 249-274 47-72 (225)
4 d3b60a2 f.37.1.1 (A:10-328) Mu 11.5 44 0.0032 27.6 1.9 23 96-118 3-25 (319)
5 d2iqia1 c.51.6.2 (A:32-209) Hy 11.2 2.2E+02 0.016 22.4 6.3 48 308-355 93-142 (178)
6 d1ut9a2 b.1.18.2 (A:208-305) C 10.1 93 0.0068 23.0 3.2 35 334-368 35-69 (98)
7 d1d7pm_ b.18.1.2 (M:) C2 domai 8.9 2.1E+02 0.015 22.0 5.3 64 310-375 84-153 (159)
8 d1goia1 b.72.2.1 (A:447-498) C 8.5 98 0.0071 20.5 2.3 15 354-369 22-36 (52)
9 d1jz8a1 b.1.4.1 (A:220-333) be 8.0 3.2E+02 0.023 19.2 5.7 27 319-345 80-106 (114)
10 d1f1sa2 b.1.18.2 (A:171-248) H 7.8 1.9E+02 0.014 20.6 3.8 41 310-350 31-74 (78)
No 1
>d1iaka2 d.19.1.1 (A:1-81) Class II MHC alpha chain, N-terminal domain {Mouse (Mus musculus), I-AK [TaxId: 10090]}
Probab=24.36 E-value=18 Score=26.98 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=22.5
Q ss_pred CeEEEecCCCCce-EEEEECCCcceEEec
Q 014569 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAM 385 (422)
Q Consensus 358 Gvt~YQts~g~~~-l~v~~~~~~~~~lp~ 385 (422)
|..||| +||.++ .+..+|++-.+.+.+
T Consensus 10 g~~~yq-s~~psGe~~~efDGdE~fyvDl 37 (82)
T d1iaka2 10 GITVYQ-SPGDIGQYTFEFDGDELFYVDL 37 (82)
T ss_dssp EEEEEE-ETTTEEEEEEEETTEEEEEEET
T ss_pred ceeEEE-ecCCCccEeeeeCCcEEEEEEc
Confidence 789999 677766 788999998888877
No 2
>d1uvqa2 d.19.1.1 (A:2-84) Class II MHC alpha chain, N-terminal domain {Human (Homo sapiens), HLA-DQ6 [TaxId: 9606]}
Probab=21.42 E-value=26 Score=26.13 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=22.4
Q ss_pred CeEEEecCCCCce-EEEEECCCcceEEec
Q 014569 358 GITIYQTDWSFSA-LQVLKNDEGPFNLAM 385 (422)
Q Consensus 358 Gvt~YQts~g~~~-l~v~~~~~~~~~lp~ 385 (422)
|.+||| +||.++ .+..+|++-.+.+.+
T Consensus 11 g~~~yq-s~~psGey~~~fDGdE~fyvDl 38 (83)
T d1uvqa2 11 GVNLYQ-FYGPSGQYTHEFDGDEQFYVDL 38 (83)
T ss_dssp EEEEEE-TTTTEEEEEEEETTEEEEEEET
T ss_pred cceEEE-ecCCCccEeeccCCcEEEEEEc
Confidence 789999 668776 788999998888877
No 3
>d1y5ic1 f.21.3.1 (C:1-225) Respiratory nitrate reductase 1 gamma chain {Escherichia coli [TaxId: 562]}
Probab=15.84 E-value=25 Score=30.04 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=22.3
Q ss_pred cccchhhHHHHHHHHHHHhhhceecc
Q 014569 249 VGRFAPIGVHLAMLLIMAGGTLSATG 274 (422)
Q Consensus 249 ~grlGpilvHlslIlIL~Gallg~l~ 274 (422)
+-+++..++|.|++++++|.+.+-+.
T Consensus 47 ~l~~~~~lfH~gi~~~f~gh~~g~l~ 72 (225)
T d1y5ic1 47 GMNLASNLFHIGILGIFVGHFFGMLT 72 (225)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 46799999999999999998887543
No 4
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.54 E-value=44 Score=27.65 Aligned_cols=23 Identities=9% Similarity=0.052 Sum_probs=14.7
Q ss_pred hHHHHHHHhcChhHHHHHHHHHH
Q 014569 96 LPRRVLAALSNLPLAIGEMAAIA 118 (422)
Q Consensus 96 ~~kki~~~LsSlkLAI~LLllIa 118 (422)
.+|++|+++.--|--+++.++.+
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~ 25 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIAL 25 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889998877665544444333
No 5
>d2iqia1 c.51.6.2 (A:32-209) Hypothetical protein XCC0632 {Xanthomonas campestris pv. campestris [TaxId: 340]}
Probab=11.24 E-value=2.2e+02 Score=22.40 Aligned_cols=48 Identities=19% Similarity=0.287 Sum_probs=31.5
Q ss_pred ceEEEEccEEEEEecCCCce-eeEEEEEEEecC-CCeeEEEEEEeCcceE
Q 014569 308 STEVHVNKFYMDYYDSGEVK-QFHSDLSLFDIG-GKEVMRKTISVNDPLR 355 (422)
Q Consensus 308 pfsVrLn~F~Ieyy~~G~pk-qf~SdLsI~d~~-G~ev~~~tIsVN~PL~ 355 (422)
-..++|.+|+.++..++..+ ...-+.++.+.. |+.+..+...+..|+.
T Consensus 93 ~L~~~i~~F~~~~~~~~~~~a~~~~~~~l~~~~~~~v~~~~~f~~~~p~~ 142 (178)
T d2iqia1 93 KLAIDVRRFESDYAGQSLPAATIELNAKLLHSSDQRVVASRTFTVARPSS 142 (178)
T ss_dssp EEEEEEEEEEEECTTSSSCEEEEEEEEEEEETTTTEEEEEEEEEEEEECS
T ss_pred EEEEEEEEEEEEecCCCceEEEEEEEEEEecCCCCcEEEEEEEEEEEeCC
Confidence 35899999999987665432 334455566644 4456677777777763
No 6
>d1ut9a2 b.1.18.2 (A:208-305) Cellulose 1,4-beta-cellobiosidase CbhA, precatalytic domain {Clostridium thermocellum [TaxId: 1515]}
Probab=10.12 E-value=93 Score=23.01 Aligned_cols=35 Identities=14% Similarity=-0.014 Sum_probs=25.2
Q ss_pred EEEecCCCeeEEEEEEeCcceEECCeEEEecCCCC
Q 014569 334 SLFDIGGKEVMRKTISVNDPLRYGGITIYQTDWSF 368 (422)
Q Consensus 334 sI~d~~G~ev~~~tIsVN~PL~y~Gvt~YQts~g~ 368 (422)
.|.|.+|+.+.+.+.....--...|-++|+.||..
T Consensus 35 ~l~d~~g~~V~~G~~~~~~~~~~sg~~v~~~DFS~ 69 (98)
T d1ut9a2 35 QLKNAAGVVVLEGYTEPKGLDKDSQDYVHWLDFSD 69 (98)
T ss_dssp EEECTTSCEEEEEECEEEEEETTTTEEEEEEECTT
T ss_pred EEEeCCCCEEEeeeeecccccCCcCCEEEEEEecc
Confidence 46788999998888776544334477889988863
No 7
>d1d7pm_ b.18.1.2 (M:) C2 domain of factor VIII {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.91 E-value=2.1e+02 Score=22.04 Aligned_cols=64 Identities=16% Similarity=0.199 Sum_probs=38.2
Q ss_pred EEEEccEEEEEecCCCceeeEEE---EEEEec--CCCeeEEEEEEeCcceEECCeEEEecCCC-CceEEEEE
Q 014569 310 EVHVNKFYMDYYDSGEVKQFHSD---LSLFDI--GGKEVMRKTISVNDPLRYGGITIYQTDWS-FSALQVLK 375 (422)
Q Consensus 310 sVrLn~F~Ieyy~~G~pkqf~Sd---LsI~d~--~G~ev~~~tIsVN~PL~y~Gvt~YQts~g-~~~l~v~~ 375 (422)
.-.+.+|.+.|-.||..=..+.+ ..+... |+.. ..+...+.|+.-+-++||=.+|. ...+++++
T Consensus 84 ~~~v~~y~l~yS~dg~~w~~y~~~~~~~vF~gn~d~~~--~v~~~~~~pi~aryiRi~P~~w~~~~~lRvEl 153 (159)
T d1d7pm_ 84 SMYVKEFLISSSQDGHQWTLFFQNGKVKVFQGNQDSFT--PVVNCLDPPLLTRYLRIHPQSWVHQIALRMEV 153 (159)
T ss_dssp EEEEEEEEEEEESSSSSCEECEETTEECCEECCSSSSC--CEEEEEEEEEEEEEEEEEEEEEESSCCBEEEE
T ss_pred ceeEEEEEEEEecCCCeEEEEecCCceEEEeeecCCCc--eEEEECCCCeEEEEEEEEEeecCCccEEEEEE
Confidence 45678899998877754222211 112221 2222 24556788999999999977764 34566654
No 8
>d1goia1 b.72.2.1 (A:447-498) Chitinase B, C-terminal domain {Serratia marcescens [TaxId: 615]}
Probab=8.50 E-value=98 Score=20.47 Aligned_cols=15 Identities=33% Similarity=1.001 Sum_probs=11.5
Q ss_pred eEECCeEEEecCCCCc
Q 014569 354 LRYGGITIYQTDWSFS 369 (422)
Q Consensus 354 L~y~Gvt~YQts~g~~ 369 (422)
+.|+|+ |.|+.|+++
T Consensus 22 VSy~GY-iWQaKW~~~ 36 (52)
T d1goia1 22 VSYQGY-VWQTKWGYI 36 (52)
T ss_dssp EEETTE-EEEESSSCB
T ss_pred EeeceE-EEEEeeeee
Confidence 467786 789999864
No 9
>d1jz8a1 b.1.4.1 (A:220-333) beta-Galactosidase, domains 2 and 4 {Escherichia coli [TaxId: 562]}
Probab=8.02 E-value=3.2e+02 Score=19.21 Aligned_cols=27 Identities=7% Similarity=0.170 Sum_probs=21.2
Q ss_pred EEecCCCceeeEEEEEEEecCCCeeEE
Q 014569 319 DYYDSGEVKQFHSDLSLFDIGGKEVMR 345 (422)
Q Consensus 319 eyy~~G~pkqf~SdLsI~d~~G~ev~~ 345 (422)
..+....|.-|.-.+++.|++|+.+..
T Consensus 80 ~lWs~e~P~LY~l~v~L~~~~g~~~d~ 106 (114)
T d1jz8a1 80 KLWSAEIPNLYRAVVELHTADGTLIEA 106 (114)
T ss_dssp CBBCSSSBCCEEEEEEEEETTSCEEEE
T ss_pred cCCCCCCCeEEEEEEEEEcCCCCEEEE
Confidence 345567899999999999988876544
No 10
>d1f1sa2 b.1.18.2 (A:171-248) Hyaluronate lyase precatalytic domain {Streptococcus agalactiae [TaxId: 1311]}
Probab=7.77 E-value=1.9e+02 Score=20.65 Aligned_cols=41 Identities=15% Similarity=0.113 Sum_probs=26.5
Q ss_pred EEEEccEEEEEecCCC---ceeeEEEEEEEecCCCeeEEEEEEe
Q 014569 310 EVHVNKFYMDYYDSGE---VKQFHSDLSLFDIGGKEVMRKTISV 350 (422)
Q Consensus 310 sVrLn~F~Ieyy~~G~---pkqf~SdLsI~d~~G~ev~~~tIsV 350 (422)
.-.+++=.|-.-.||- -++=.+.+.|.|.+|++++.-.++|
T Consensus 31 ~Y~iens~i~~V~nGil~Pl~eG~T~vkVsdkdGk~vk~iPl~v 74 (78)
T d1f1sa2 31 QYTLTNPSLGKIVGGILYPNATGSTTVKISDKSGKIIKEVPLSV 74 (78)
T ss_dssp EEEESSGGGEEEETTEEEECSCEEEEEEEECTTCCEEEEEEEEE
T ss_pred EEEecCCceeeeecceEEEcccCceEEEEeccCCcEEEEEeeEE
Confidence 3333444444445552 2566788999999999987766655
Done!