Query 014570
Match_columns 422
No_of_seqs 150 out of 193
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 13:57:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014570.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/014570hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3broa1 a.4.5.28 (A:3-137) Tra 23.1 95 0.0069 23.3 6.7 71 61-135 33-107 (135)
2 d2a61a1 a.4.5.28 (A:5-143) Tra 17.4 68 0.0049 24.5 4.6 59 75-136 45-107 (139)
3 d1sfka_ a.190.1.1 (A:) Flavivi 14.8 23 0.0017 26.1 0.9 19 294-312 47-65 (73)
4 d2etha1 a.4.5.28 (A:1-140) Put 13.9 97 0.0071 23.4 4.6 55 81-135 50-108 (140)
5 d2frha1 a.4.5.28 (A:102-216) P 13.1 1.3E+02 0.0091 22.4 5.0 61 65-129 41-105 (115)
6 d1hsja1 a.4.5.28 (A:373-487) S 9.7 3.2E+02 0.023 19.9 6.5 65 62-130 37-105 (115)
7 d1gpma1 c.26.2.1 (A:208-404) G 9.6 67 0.0049 24.7 2.2 23 158-184 173-195 (197)
8 d1v9va1 a.29.10.1 (A:8-108) Mi 9.3 90 0.0065 24.1 2.7 34 115-151 58-95 (101)
9 d1ou0a_ c.23.17.1 (A:) Precorr 8.2 1.6E+02 0.012 24.7 4.3 53 227-293 137-189 (190)
10 d2fbia1 a.4.5.28 (A:5-140) Pro 8.0 2.3E+02 0.016 21.0 4.9 59 75-136 45-107 (136)
No 1
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=23.15 E-value=95 Score=23.27 Aligned_cols=71 Identities=10% Similarity=0.104 Sum_probs=46.4
Q ss_pred HHHHHHhcCCCCCcchHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHH
Q 014570 61 NTHRLMSTRKRGPFVSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIR 135 (422)
Q Consensus 61 ~lk~li~s~p~~~~l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~ 135 (422)
.+...|...|. ..+++..| .+.+|++. ++..-|.+-=-|-.......++...+.|||+|.+++.+=.....
T Consensus 33 ~vL~~l~~~~~-~~it~~el---a~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~~~~~~ 107 (135)
T d3broa1 33 TIIDYLSRNKN-KEVLQRDL---ESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETIILSYMD 107 (135)
T ss_dssp HHHHHHHHTTT-SCCBHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCCCHHHH---HHHHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHHHHHHH
Confidence 44455565653 46776555 46788863 55556666666766654445667789999999998876554443
No 2
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=17.41 E-value=68 Score=24.46 Aligned_cols=59 Identities=12% Similarity=0.020 Sum_probs=39.0
Q ss_pred chHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHh
Q 014570 75 VSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRR 136 (422)
Q Consensus 75 l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~ 136 (422)
++++.| .+.+|++. +++.-|.+---|-..-....++..++.||++|.+++.+=......
T Consensus 45 ~t~~~l---a~~l~i~~~tvs~~l~~L~~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~~~~~~~ 107 (139)
T d2a61a1 45 KRPGEL---SVLLGVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEEVIEKVIERREN 107 (139)
T ss_dssp BCHHHH---HHHHTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHhCCCcccchHHHHHHHhcCeeeeeeccCCCCeEEEEECHHHHHHHHHHHHHHHH
Confidence 454444 57899974 555566666666655433345677999999999987765544443
No 3
>d1sfka_ a.190.1.1 (A:) Flavivirus capsid protein C {Kunjin virus [TaxId: 11077]}
Probab=14.78 E-value=23 Score=26.14 Aligned_cols=19 Identities=26% Similarity=0.592 Sum_probs=17.2
Q ss_pred cchhhhhhhhHHhhhhhcC
Q 014570 294 TVEKRVEVERLSHFRKDFA 312 (422)
Q Consensus 294 TveKr~~v~~L~~fr~efg 312 (422)
+|+|...+.+|..|++|.|
T Consensus 47 ~v~K~~A~k~L~~FKKeig 65 (73)
T d1sfka_ 47 SVNKQTAMKHLLSFKKELG 65 (73)
T ss_dssp TSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 6889999999999999976
No 4
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=13.92 E-value=97 Score=23.43 Aligned_cols=55 Identities=13% Similarity=0.062 Sum_probs=36.4
Q ss_pred HhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHH
Q 014570 81 SRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIR 135 (422)
Q Consensus 81 ~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~ 135 (422)
+.+...+|++. ++..=|.+-=-|=..-....++.-++.||++|.+++.+-...+.
T Consensus 50 ~~La~~l~i~~~~vs~~v~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~ 108 (140)
T d2etha1 50 KEIAEFLSTTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGKEIFGEILSNFE 108 (140)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHCCCeeeeecccccchhhhhcCHHHHHHHHHHHHHHH
Confidence 44467889974 44444555555555544445667799999999998877666554
No 5
>d2frha1 a.4.5.28 (A:102-216) Pleiotropic regulator of virulence genes, SarA {Staphylococcus aureus [TaxId: 1280]}
Probab=13.08 E-value=1.3e+02 Score=22.45 Aligned_cols=61 Identities=10% Similarity=-0.018 Sum_probs=38.4
Q ss_pred HHhcCCCCCcchHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHH
Q 014570 65 LMSTRKRGPFVSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINE 129 (422)
Q Consensus 65 li~s~p~~~~l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~e 129 (422)
.|...+.+ .+++..| .+.+|++. +++.-|.+---|-..-....++.-++.|||+|.+.+.+
T Consensus 41 ~l~~~~~~-~~t~~~l---a~~l~~~~~tvs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~ 105 (115)
T d2frha1 41 YISENKEK-EYYLKDI---INHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIES 105 (115)
T ss_dssp HHHHTCCS-EEEHHHH---HHHSSSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHHHHHHH
T ss_pred HHHcCCCC-CCCHHHH---HHHHCCCHhHHHHHHHHHHhhhhheeeecccCCceEEEEECHHHHHHHHH
Confidence 34444443 5665555 57888863 55555666666654433334566789999999997655
No 6
>d1hsja1 a.4.5.28 (A:373-487) Staphylococcal accessory regulator A homolog, SarR {Staphylococcus aureus [TaxId: 1280]}
Probab=9.66 E-value=3.2e+02 Score=19.93 Aligned_cols=65 Identities=6% Similarity=-0.079 Sum_probs=38.9
Q ss_pred HHHHHhcCCCCCcchHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHH
Q 014570 62 THRLMSTRKRGPFVSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEE 130 (422)
Q Consensus 62 lk~li~s~p~~~~l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE 130 (422)
+...|...+. ..+++..| ...+|++. +++.-|.+---|=..-....++.-++.||++|.+++.+=
T Consensus 37 vL~~l~~~~~-~~~t~~el---a~~l~~~~~~vs~~i~~Le~~gli~r~~~~~D~R~~~i~LT~~G~~~~~~~ 105 (115)
T d1hsja1 37 ILNHILRSES-NEISSKEI---AKCSEFKPYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKANIQKL 105 (115)
T ss_dssp HHHHHHTCSC-SEEEHHHH---HHSSCCCHHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHHHHHHH
T ss_pred HHHHHHccCC-CCcCHHHH---HHHHCCChhhHHHHHHHHHHcCCeEEEeecCCCceEEEEECHHHHHHHHHH
Confidence 3334444333 35665555 56888863 444444444444434333356778999999999987653
No 7
>d1gpma1 c.26.2.1 (A:208-404) GMP synthetase, central domain {Escherichia coli [TaxId: 562]}
Probab=9.58 E-value=67 Score=24.71 Aligned_cols=23 Identities=39% Similarity=0.492 Sum_probs=17.5
Q ss_pred cHHHHHHHHHhcCCChhhhhcccccCC
Q 014570 158 HVHALRLIRTELGLPEDFRDSILGKYG 184 (422)
Q Consensus 158 pL~kl~~lr~dLGLP~DF~~~ll~kyP 184 (422)
.=..|..+..+||||.+ ++.|+|
T Consensus 173 ~K~eV~~lA~~lglP~~----i~~~~p 195 (197)
T d1gpma1 173 FKDEVRKIGLELGLPYD----MLYRHP 195 (197)
T ss_dssp CHHHHHHHHHHTTCCHH----HHTSCC
T ss_pred cHHHHHHHHHHcCCCHH----HhCCCC
Confidence 33578899999999997 445655
No 8
>d1v9va1 a.29.10.1 (A:8-108) Microtubule-associated serine/threonine-protein kinase 3, MAST3 (KIAA0561) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.30 E-value=90 Score=24.13 Aligned_cols=34 Identities=26% Similarity=0.428 Sum_probs=23.0
Q ss_pred ccccccHHHHHHHHHHHHHHHhChH----HHHHHHHHHhhc
Q 014570 115 LCCRFTPKMENLINEEVDVIRRCES----DAVIRIKKLLLM 151 (422)
Q Consensus 115 ~~~rLT~~a~~L~~eE~~v~~~~e~----~~V~rLrKLLMM 151 (422)
.|+.||+..+.|+.| +.+..++ .+..-++||||.
T Consensus 58 YF~Else~LekLl~e---a~erSe~~~~~~i~~lvkkLL~I 95 (101)
T d1v9va1 58 YFLEMQEKLERLLQD---AHERSDSEEVSFIVQLVRKLLII 95 (101)
T ss_dssp HHHHHHHHHHHHHHH---HHHTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---HHhccCHHHHHHHHHHHHHHHhh
Confidence 477899999998766 4444443 345567777774
No 9
>d1ou0a_ c.23.17.1 (A:) Precorrin-8x methylmutase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Probab=8.17 E-value=1.6e+02 Score=24.74 Aligned_cols=53 Identities=19% Similarity=0.184 Sum_probs=39.5
Q ss_pred ccccccccCCCCCccchhhHHHHHhhhcCCCCCCCCCCCcccccccCCCchhhhhHHHHHHHHHhhc
Q 014570 227 TNFAFPINFPTGFKIERGFREKLKNWQRLPYVKPYEGKENVVRVRTCGGFERFEKRAVAVVHELLSL 293 (422)
Q Consensus 227 ~~~~Fp~~fP~Gf~l~k~~~~~l~~fQ~LPyiSPYed~~~l~~~~~~~~s~~~EKRaVaVlHELLSL 293 (422)
.++++-+-.|-||-=-...+++|.+. .+|||.== -..|||. -|+|++|.||.|
T Consensus 137 ~~PalVIG~PVGFVga~ESK~~L~~~-~vP~It~~---------GrkGGS~----vAaAivNAL~~l 189 (190)
T d1ou0a_ 137 WYDIPIVGIPVGFINASKAKEGLVSS-HIEYISVE---------GHRGGSP----IAASIVNGFGRF 189 (190)
T ss_dssp CTTCCEEECCCCSHHHHHHHHHHHHS-SSCEEEES---------SSCCCHH----HHHHHHHHHGGG
T ss_pred CCCCeEEECCCCccCHHHHHHHHHhC-CCCEEEEe---------cCCCcHH----HHHHHHHHHHHh
Confidence 46678899999999777889999884 57776421 1245766 478999999976
No 10
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=8.02 E-value=2.3e+02 Score=21.04 Aligned_cols=59 Identities=8% Similarity=-0.058 Sum_probs=35.9
Q ss_pred chHHHHHhhhhccCCcc----hHhhHhhhCCcceEeeccCCCCCccccccHHHHHHHHHHHHHHHh
Q 014570 75 VSVQIMSRWKNILGLNI----TMGNFLHKYPHVFHLFTHPLNKNLCCRFTPKMENLINEEVDVIRR 136 (422)
Q Consensus 75 l~l~~L~k~r~~Lgl~~----~v~~FLrkyP~iF~~~~~p~~~~~~~rLT~~a~~L~~eE~~v~~~ 136 (422)
+++..| .+.+|++. +++.-|.+-=-|=.......++.-++.||++|.+++.+=.....+
T Consensus 45 ~t~~~l---a~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~ 107 (136)
T d2fbia1 45 MESYQL---ANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMSGDMEK 107 (136)
T ss_dssp EEHHHH---HHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHH
T ss_pred CCHHHH---HHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHHHHHHH
Confidence 454444 67889963 445555555444333222234567899999999988775554443
Done!