BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 014571
(422 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2
Length = 476
Score = 167 bits (424), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 110/332 (33%), Positives = 166/332 (50%), Gaps = 53/332 (15%)
Query: 11 PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
P + P+VE Y ++ F + L+ P + +RVNT +
Sbjct: 5 PKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSV 64
Query: 58 DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
V LL +Q + +I Q P L V+ + +GP
Sbjct: 65 QHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK----- 105
Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
++ EVIV +C AVLRGA VYVPG+++ S ++ GDV++V +
Sbjct: 106 NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI----------- 154
Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
G +G++ F+ + +++G G + +SR IF +GI + M I+ PS
Sbjct: 155 ---NGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
F +VL IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT A+L++D+GEV+A+D+
Sbjct: 208 FDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDK 267
Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
KV +++ A+ +GL I + DA KA++
Sbjct: 268 ILTKVNKLKQNASLLGLHSIRAFCFDATKALK 299
>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1
Length = 469
Score = 162 bits (411), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)
Query: 8 SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
S P + P+VE Y + A G F + K L+ P ++ +RVNT
Sbjct: 2 SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61
Query: 55 TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
+ V LL +Q + ++ Q P L+ V+ + GP
Sbjct: 62 ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105
Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
K E IV +C AVLRGA VY PG+++ S ++ GDV++V +
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDI-------- 154
Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
+G +G++ F+ + +++G G + +SR IF +G+ + M ++
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
PSF VL +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264
Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
+D+ NKV I++ A +GL I + D KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299
>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus
subtilis (strain 168) GN=rsmB PE=3 SV=2
Length = 447
Score = 72.4 bits (176), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 55/84 (65%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
GE+ +Q+ S++ A ALDP+ E +LD CAAPGGK+ IA L++++G V ++D +KV
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290
Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
I++ A +GL I +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314
>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1
Length = 446
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
I QLP F EG +Q+ + A L+PQ E I D+CAAPGGKTT IA L+ D+G+
Sbjct: 223 ITQLPGFA---EGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQ 279
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+ A DR ++ + +GL I ++ D
Sbjct: 280 IYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGD 311
>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2
Length = 429
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
YF+R G Y G+ +++ + + + + + P+ D+ E G + LQ
Sbjct: 153 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D ++ + L
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271
Query: 307 AEMGLKCITTYKLDAL 322
A G+ C + D L
Sbjct: 272 ARAGVSCCELAEEDFL 287
>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2
Length = 465
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 47/82 (57%)
Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
G + LQ+ S + A L P G ++D CAAPG KT+ IA+LL+++G++ A D+ ++
Sbjct: 206 GHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLA 265
Query: 301 DIQKLAAEMGLKCITTYKLDAL 322
+ L A G+ C + D L
Sbjct: 266 AMATLVARAGVSCCELAEKDFL 287
>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=trm4 PE=1 SV=1
Length = 274
Score = 59.7 bits (143), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
A ++ F + S + L G Q++ S++ L+P++ + ILDMCAAPGGKTT +A
Sbjct: 44 AFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQ 103
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
L++++G +VAV+ S + ++ MG+
Sbjct: 104 LMKNKGTIVAVEISKTRTKALKSNINRMGV 133
>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1
SV=1
Length = 618
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
+ L G LQ S + ALDP + ERILDM AAPGGKTT I++++++ G V A D
Sbjct: 321 EYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANK 380
Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
R+ + + +I +L + C
Sbjct: 381 SRTKSLIANIHRLGCTNTIVC 401
>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus
GN=Nop2 PE=2 SV=1
Length = 793
Score = 58.5 bits (140), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 43/66 (65%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G LQ S++ AL PQ+ ERILDMC APGGKT+ IA L+++ G ++A D +
Sbjct: 345 EYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANA 404
Query: 297 NKVMDI 302
+++ +
Sbjct: 405 DRLKSV 410
>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens
GN=NOP2 PE=1 SV=2
Length = 812
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 42/66 (63%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ L G LQ S++ AL PQ+ ERILDMC APGGKT+ +A L+++ G ++A D +
Sbjct: 360 EYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANA 419
Query: 297 NKVMDI 302
++ +
Sbjct: 420 ERLKSV 425
>sp|Q3YWX1|RSMB_SHISS Ribosomal RNA small subunit methyltransferase B OS=Shigella sonnei
(strain Ss046) GN=rsmB PE=3 SV=1
Length = 429
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVHDNLKRLGMKA 297
>sp|Q7UBD3|RSMB_SHIFL Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri GN=rsmB PE=3 SV=1
Length = 429
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ I +G+K
Sbjct: 273 VVAVDIDEQRLSRIYDNLKRLGMKA 297
>sp|A9N8B3|RSMB_SALPB Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmB PE=3
SV=1
Length = 429
Score = 52.8 bits (125), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q9I7A9|RSMB_PSEAE Ribosomal RNA small subunit methyltransferase B OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=rsmB PE=3 SV=1
Length = 434
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
+GI + + +LP F EG + +Q+ + + A L+ G+R+LD C APGGKT
Sbjct: 204 DGIQLAAPRDVRELPGFA---EGRVSVQDEAAQLAAEQLESAPGQRVLDACCAPGGKTCH 260
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
+ + EVVAVD ++++ +++ +GL+
Sbjct: 261 LLETQPELAEVVAVDLEESRLVRVRENLQRLGLQ 294
>sp|Q31VY8|RSMB_SHIBS Ribosomal RNA small subunit methyltransferase B OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B7UK12|RSMB_ECO27 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q0T014|RSMB_SHIF8 Ribosomal RNA small subunit methyltransferase B OS=Shigella
flexneri serotype 5b (strain 8401) GN=rsmB PE=3 SV=2
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B6I202|RSMB_ECOSE Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SE11) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B7M0Z4|RSMB_ECO8A Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O8 (strain IAI1) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B5YT08|RSMB_ECO5E Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 (strain EC4115 / EHEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q8XEE5|RSMB_ECO57 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O157:H7 GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B7LHZ0|RSMB_ECO55 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|A7ZSH7|RSMB_ECO24 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B1LGP5|RSMB_ECOSM Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|P36929|RSMB_ECOLI Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12) GN=rsmB PE=1 SV=2
Length = 429
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B1IQ11|RSMB_ECOLC Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|A8A593|RSMB_ECOHS Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O9:H4 (strain HS) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B1X6E1|RSMB_ECODH Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / DH10B) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|C4ZUE3|RSMB_ECOBW Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmB PE=3 SV=1
Length = 429
Score = 52.0 bits (123), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F D G + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
VVAVD ++ + +G+K
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q8Z1X1|RSMB_SALTI Ribosomal RNA small subunit methyltransferase B OS=Salmonella typhi
GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|C0PZV1|RSMB_SALPC Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q57J62|RSMB_SALCH Ribosomal RNA small subunit methyltransferase B OS=Salmonella
choleraesuis (strain SC-B67) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B5F7R5|RSMB_SALA4 Ribosomal RNA small subunit methyltransferase B OS=Salmonella agona
(strain SL483) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q8ZLM5|RSMB_SALTY Ribosomal RNA small subunit methyltransferase B OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|O94268|NOP2_SCHPO Putative ribosomal RNA methyltransferase nop2
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBP8B7.20c PE=1 SV=1
Length = 608
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--R 294
+ L G LQ S + AL PQ ERILDM +APGGK T +A+L ++ G + A D +
Sbjct: 315 EYLAGHYILQAASSFLPVMALAPQPNERILDMSSAPGGKVTYVAALQKNTGIIFANDSNK 374
Query: 295 SHNKVM--DIQKLAAEMGLKC 313
+ K + +I +L + C
Sbjct: 375 ARTKALSANIHRLGVRNAIVC 395
>sp|B5BGV5|RSMB_SALPK Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain AKU_12601) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q5PIT6|RSMB_SALPA Ribosomal RNA small subunit methyltransferase B OS=Salmonella
paratyphi A (strain ATCC 9150 / SARB42) GN=rsmB PE=3
SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B4TJX9|RSMB_SALHS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
heidelberg (strain SL476) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B4SUR0|RSMB_SALNS Ribosomal RNA small subunit methyltransferase B OS=Salmonella
newport (strain SL254) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q9KVU5|RSMB_VIBCH Ribosomal RNA small subunit methyltransferase B OS=Vibrio cholerae
serotype O1 (strain ATCC 39315 / El Tor Inaba N16961)
GN=rsmB PE=3 SV=1
Length = 434
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 55/103 (53%), Gaps = 9/103 (8%)
Query: 207 AMMSRAGIF-----RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQK 261
A++ +AGI +A + + ++ + QLP F EG + +Q+ + + L PQ
Sbjct: 195 ALLEQAGIVTTPHAQAEDALCLETPCDVHQLPGF---AEGWVSVQDAAAQLALTYLAPQA 251
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304
GE ILD CAAPGGKT I E +VVA+D ++ +++
Sbjct: 252 GELILDCCAAPGGKTAHILERT-PESQVVAIDCDETRLKRVRE 293
>sp|B5RH47|RSMB_SALG2 Ribosomal RNA small subunit methyltransferase B OS=Salmonella
gallinarum (strain 287/91 / NCTC 13346) GN=rsmB PE=3
SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B5R1E5|RSMB_SALEP Ribosomal RNA small subunit methyltransferase B OS=Salmonella
enteritidis PT4 (strain P125109) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + A L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQGCAVFLAPQNGEHILDLCAAPGGKTTHILEVA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|Q9CKP7|RSMB_PASMU Ribosomal RNA small subunit methyltransferase B OS=Pasteurella
multocida (strain Pm70) GN=rsmB PE=3 SV=1
Length = 446
Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ QLP+F+ EG + +Q++ + +A L P+ GE ILD CAAPGGKTT I +
Sbjct: 224 VSQLPAFH---EGAVSVQDVNAQWSALLLAPENGELILDACAAPGGKTTHILE-QAPQAH 279
Query: 289 VVAVDRSHNKVMDIQKLAAEM 309
VVA+D ++ + + A M
Sbjct: 280 VVALDVEATRLKRVHENLARM 300
>sp|B7NDR0|RSMB_ECOLU Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmB PE=3 SV=1
Length = 429
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 4/81 (4%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP F EG + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +VVA
Sbjct: 220 LPGFE---EGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVA 275
Query: 292 VDRSHNKVMDIQKLAAEMGLK 312
VD ++ + +G+K
Sbjct: 276 VDIDEQRLSRVYDNLKRLGMK 296
>sp|B7LRQ5|RSMB_ESCF3 Ribosomal RNA small subunit methyltransferase B OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmB PE=3 SV=1
Length = 429
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 44/82 (53%), Gaps = 4/82 (4%)
Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
LP F EG + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +VVA
Sbjct: 220 LPGFE---EGWVTVQDASAQGCMAWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQVVA 275
Query: 292 VDRSHNKVMDIQKLAAEMGLKC 313
VD ++ + +G+K
Sbjct: 276 VDIDEQRLSRVYDNLKRLGMKA 297
>sp|A8AQI3|RSMB_CITK8 Ribosomal RNA small subunit methyltransferase B OS=Citrobacter
koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696)
GN=rsmB PE=3 SV=1
Length = 428
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + L PQ GE+ILD+CAAPGGKTT I E +
Sbjct: 216 VHALPGFE---EGWVTVQDASAQGCVSFLAPQNGEKILDLCAAPGGKTTHILEAA-PEAQ 271
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 272 VLAVDVDEQRLSRVYDNLKRLGMKA 296
>sp|A9MN78|RSMB_SALAR Ribosomal RNA small subunit methyltransferase B OS=Salmonella
arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980)
GN=rsmB PE=3 SV=1
Length = 429
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 44/85 (51%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + L PQ GE ILD+CAAPGGKTT I E +
Sbjct: 217 VHALPGF---AEGWVTVQDASAQKCVAFLAPQNGEHILDLCAAPGGKTTHILEAA-PEAD 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ I +G+K
Sbjct: 273 VLAVDVDEQRLSRIYDNLKRLGMKA 297
>sp|Q8FD12|RSMB_ECOL6 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmB PE=3
SV=1
Length = 429
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFE---EGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|B7N0S9|RSMB_ECO81 Ribosomal RNA small subunit methyltransferase B OS=Escherichia coli
O81 (strain ED1a) GN=rsmB PE=3 SV=1
Length = 429
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + L PQ GE ILD+CAAPGGKTT I + E +
Sbjct: 217 VHALPGFE---EGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VLAVDIDEQRLSRVYDNLKRLGMKA 297
>sp|A6TEU2|RSMB_KLEP7 Ribosomal RNA small subunit methyltransferase B OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmB PE=3 SV=1
Length = 431
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 46/85 (54%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
+ LP F EG + +Q+ + L P+ GERILD+CAAPGGKTT I + + +
Sbjct: 217 VHALPGFA---EGWVTVQDASAQGCMRYLQPENGERILDLCAAPGGKTTHILEVA-PQAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
V+AVD ++ + +G+K
Sbjct: 273 VMAVDIDEQRLSRVYDNLKRLGVKA 297
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 153,220,563
Number of Sequences: 539616
Number of extensions: 6359141
Number of successful extensions: 20681
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 257
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 20357
Number of HSP's gapped (non-prelim): 356
length of query: 422
length of database: 191,569,459
effective HSP length: 120
effective length of query: 302
effective length of database: 126,815,539
effective search space: 38298292778
effective search space used: 38298292778
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)