Query 014571
Match_columns 422
No_of_seqs 413 out of 2219
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 06:26:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/014571.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/014571hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1122 tRNA and rRNA cytosine 100.0 2.1E-50 4.7E-55 404.0 8.6 349 3-407 7-370 (460)
2 COG0144 Sun tRNA and rRNA cyto 100.0 6.3E-43 1.4E-47 354.4 23.3 234 13-407 52-287 (355)
3 PRK11933 yebU rRNA (cytosine-C 100.0 2.8E-42 6.1E-47 359.7 21.7 236 14-408 3-242 (470)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 8E-39 1.7E-43 315.3 11.2 195 192-407 3-218 (283)
5 PRK14903 16S rRNA methyltransf 100.0 1.9E-36 4.2E-41 314.3 13.6 220 165-406 127-364 (431)
6 PRK14901 16S rRNA methyltransf 100.0 5.5E-36 1.2E-40 311.3 13.9 222 166-406 143-382 (434)
7 TIGR00563 rsmB ribosomal RNA s 100.0 2.4E-34 5.3E-39 298.3 15.6 218 166-406 131-366 (426)
8 TIGR00446 nop2p NOL1/NOP2/sun 100.0 3.3E-33 7.2E-38 272.7 15.8 183 202-407 1-198 (264)
9 PRK14904 16S rRNA methyltransf 100.0 5.9E-33 1.3E-37 289.5 13.8 218 166-406 145-375 (445)
10 PRK10901 16S rRNA methyltransf 100.0 5E-32 1.1E-36 281.1 15.1 221 165-408 136-372 (427)
11 PRK14902 16S rRNA methyltransf 100.0 8.6E-32 1.9E-36 280.6 13.9 221 166-408 143-379 (444)
12 KOG2198 tRNA cytosine-5-methyl 100.0 7E-29 1.5E-33 247.1 8.6 169 228-407 120-295 (375)
13 KOG2360 Proliferation-associat 99.8 4.7E-20 1E-24 184.3 10.1 195 196-406 128-342 (413)
14 PRK03522 rumB 23S rRNA methylu 99.3 2E-12 4.4E-17 129.5 6.6 137 255-416 167-312 (315)
15 COG2265 TrmA SAM-dependent met 99.3 1.4E-11 3.1E-16 128.2 10.8 140 252-412 284-432 (432)
16 PRK13168 rumA 23S rRNA m(5)U19 99.3 8.4E-12 1.8E-16 130.6 8.3 142 254-416 290-440 (443)
17 PF05958 tRNA_U5-meth_tr: tRNA 99.2 1.2E-11 2.5E-16 126.0 6.6 150 253-415 189-348 (352)
18 COG2242 CobL Precorrin-6B meth 99.2 1.9E-10 4.1E-15 106.4 12.1 74 251-325 24-97 (187)
19 PF01209 Ubie_methyltran: ubiE 99.2 1.4E-10 3.1E-15 111.7 10.0 85 252-351 38-122 (233)
20 TIGR02085 meth_trns_rumB 23S r 99.1 7E-11 1.5E-15 121.2 7.8 135 257-416 229-372 (374)
21 PRK05031 tRNA (uracil-5-)-meth 99.1 2.1E-10 4.5E-15 117.3 10.1 143 262-416 207-359 (362)
22 TIGR00479 rumA 23S rRNA (uraci 99.1 2.3E-10 5E-15 119.3 9.7 137 254-411 285-431 (431)
23 TIGR01177 conserved hypothetic 99.1 8.2E-10 1.8E-14 111.3 12.8 118 253-406 174-292 (329)
24 COG2016 Predicted RNA-binding 99.1 2.1E-10 4.6E-15 103.2 7.3 73 123-226 76-148 (161)
25 TIGR02143 trmA_only tRNA (urac 99.1 3.4E-10 7.4E-15 115.3 9.1 142 263-416 199-350 (353)
26 TIGR00080 pimt protein-L-isoas 99.1 9.4E-10 2E-14 104.2 11.5 92 251-357 67-158 (215)
27 PF05175 MTS: Methyltransferas 99.1 8.8E-10 1.9E-14 100.8 10.8 121 247-406 17-138 (170)
28 TIGR03704 PrmC_rel_meth putati 99.1 7.6E-10 1.6E-14 107.7 10.6 123 261-406 86-214 (251)
29 PF13659 Methyltransf_26: Meth 99.1 9E-10 1.9E-14 93.2 9.8 111 262-406 1-113 (117)
30 PF12847 Methyltransf_18: Meth 99.1 1.5E-09 3.2E-14 91.0 10.9 110 261-409 1-112 (112)
31 COG2226 UbiE Methylase involve 99.1 6.4E-10 1.4E-14 107.3 9.7 85 251-351 41-125 (238)
32 PF01472 PUA: PUA domain; Int 99.0 3.2E-10 6.9E-15 90.2 5.6 71 124-226 1-71 (74)
33 PRK14967 putative methyltransf 99.0 1.7E-09 3.7E-14 102.9 11.3 138 240-406 13-157 (223)
34 PRK14560 putative RNA-binding 99.0 7.6E-10 1.6E-14 100.7 7.3 74 122-226 75-148 (160)
35 TIGR03533 L3_gln_methyl protei 99.0 3.8E-09 8.2E-14 104.6 12.0 129 257-406 117-249 (284)
36 TIGR00451 unchar_dom_2 unchara 99.0 7.1E-10 1.5E-14 94.2 5.6 88 103-227 16-103 (107)
37 PRK13942 protein-L-isoaspartat 99.0 4.1E-09 8.9E-14 99.9 11.2 88 251-353 66-153 (212)
38 TIGR00537 hemK_rel_arch HemK-r 99.0 6E-09 1.3E-13 95.6 12.0 132 248-406 6-138 (179)
39 PRK11805 N5-glutamine S-adenos 98.9 9.7E-09 2.1E-13 102.8 13.0 124 262-406 134-261 (307)
40 PTZ00146 fibrillarin; Provisio 98.9 4E-09 8.7E-14 104.4 9.7 84 257-354 128-211 (293)
41 PF01135 PCMT: Protein-L-isoas 98.9 5.5E-09 1.2E-13 99.1 9.7 94 248-356 57-152 (209)
42 PRK13944 protein-L-isoaspartat 98.9 1.1E-08 2.5E-13 96.3 11.5 88 252-354 63-151 (205)
43 PRK04266 fibrillarin; Provisio 98.9 7E-09 1.5E-13 99.5 10.2 93 247-354 56-150 (226)
44 PRK15128 23S rRNA m(5)C1962 me 98.9 6.8E-09 1.5E-13 107.4 10.4 105 237-357 199-305 (396)
45 TIGR03684 arCOG00985 arCOG0415 98.9 3E-09 6.5E-14 95.8 6.1 74 122-226 68-141 (150)
46 TIGR03534 RF_mod_PrmC protein- 98.9 1.3E-08 2.8E-13 97.4 10.9 126 261-406 87-215 (251)
47 PRK09328 N5-glutamine S-adenos 98.9 2.5E-08 5.5E-13 97.0 12.5 130 257-406 104-236 (275)
48 TIGR00438 rrmJ cell division p 98.8 1.4E-08 3.1E-13 94.0 9.5 117 256-406 27-144 (188)
49 TIGR00536 hemK_fam HemK family 98.8 3.3E-08 7.1E-13 97.7 12.3 125 261-406 114-242 (284)
50 PRK00377 cbiT cobalt-precorrin 98.8 2.8E-08 6E-13 92.9 10.9 88 251-352 30-118 (198)
51 PF09445 Methyltransf_15: RNA 98.8 1.4E-08 3E-13 92.7 8.5 83 263-360 1-84 (163)
52 PRK11783 rlmL 23S rRNA m(2)G24 98.8 3.5E-08 7.6E-13 109.0 12.7 133 239-406 519-654 (702)
53 PRK00121 trmB tRNA (guanine-N( 98.8 4E-08 8.6E-13 92.4 10.7 115 261-408 40-156 (202)
54 PF08704 GCD14: tRNA methyltra 98.8 2E-08 4.4E-13 97.5 8.9 106 240-359 21-127 (247)
55 PF13847 Methyltransf_31: Meth 98.8 3.4E-08 7.4E-13 88.1 9.4 82 260-355 2-83 (152)
56 PRK14968 putative methyltransf 98.8 1.1E-07 2.5E-12 86.7 12.5 132 250-406 12-146 (188)
57 PRK07402 precorrin-6B methylas 98.8 5.5E-08 1.2E-12 90.6 10.5 83 240-323 19-101 (196)
58 TIGR02752 MenG_heptapren 2-hep 98.7 5.8E-08 1.3E-12 92.2 10.5 87 251-352 35-121 (231)
59 PRK00312 pcm protein-L-isoaspa 98.7 7.3E-08 1.6E-12 90.8 11.1 87 252-356 69-155 (212)
60 PRK10909 rsmD 16S rRNA m(2)G96 98.7 5.9E-08 1.3E-12 91.4 10.2 82 260-357 52-134 (199)
61 PRK00050 16S rRNA m(4)C1402 me 98.7 6E-08 1.3E-12 96.6 10.6 94 253-359 11-104 (296)
62 TIGR02469 CbiT precorrin-6Y C5 98.7 1E-07 2.2E-12 80.8 10.7 111 254-409 12-123 (124)
63 COG2518 Pcm Protein-L-isoaspar 98.7 8.4E-08 1.8E-12 90.6 10.9 99 240-356 51-149 (209)
64 PRK13943 protein-L-isoaspartat 98.7 8.1E-08 1.7E-12 96.8 11.0 86 254-354 73-158 (322)
65 PF03602 Cons_hypoth95: Conser 98.7 3E-08 6.5E-13 92.2 6.8 86 260-358 41-127 (183)
66 COG1092 Predicted SAM-dependen 98.7 1.3E-07 2.9E-12 97.3 11.4 143 238-414 197-345 (393)
67 COG2519 GCD14 tRNA(1-methylade 98.7 1E-07 2.2E-12 92.1 9.7 96 242-355 77-173 (256)
68 COG4123 Predicted O-methyltran 98.6 1.2E-07 2.7E-12 91.8 9.3 134 247-406 30-168 (248)
69 PRK08287 cobalt-precorrin-6Y C 98.6 2E-07 4.4E-12 86.1 10.4 91 245-353 15-105 (187)
70 PRK14966 unknown domain/N5-glu 98.6 3.4E-07 7.4E-12 94.9 12.8 145 240-406 229-379 (423)
71 TIGR00095 RNA methyltransferas 98.6 1.7E-07 3.8E-12 87.4 9.3 84 261-357 49-133 (189)
72 PRK14121 tRNA (guanine-N(7)-)- 98.6 3.7E-07 8.1E-12 93.9 12.4 133 244-413 107-241 (390)
73 TIGR00091 tRNA (guanine-N(7)-) 98.6 3E-07 6.4E-12 85.9 10.7 116 260-407 15-131 (194)
74 PRK13795 hypothetical protein; 98.6 2.9E-07 6.3E-12 100.7 12.2 157 121-312 124-298 (636)
75 TIGR00138 gidB 16S rRNA methyl 98.6 2.1E-07 4.5E-12 86.3 9.5 76 261-353 42-117 (181)
76 PRK00107 gidB 16S rRNA methylt 98.6 3.2E-07 7E-12 85.6 10.4 77 260-353 44-120 (187)
77 PLN02233 ubiquinone biosynthes 98.6 2.3E-07 4.9E-12 90.8 9.7 85 252-351 64-151 (261)
78 PRK13534 7-cyano-7-deazaguanin 98.6 1.1E-07 2.3E-12 103.7 7.5 73 123-227 563-635 (639)
79 PF01170 UPF0020: Putative RNA 98.6 3.6E-07 7.9E-12 84.5 10.0 90 251-355 18-116 (179)
80 PF10672 Methyltrans_SAM: S-ad 98.5 3E-07 6.5E-12 91.2 9.6 131 238-406 103-236 (286)
81 PRK11873 arsM arsenite S-adeno 98.5 3.8E-07 8.2E-12 89.1 9.9 82 256-352 72-153 (272)
82 PF02475 Met_10: Met-10+ like- 98.5 2.9E-07 6.4E-12 86.8 8.7 86 259-361 99-185 (200)
83 PLN02781 Probable caffeoyl-CoA 98.5 4E-07 8.6E-12 87.8 9.6 96 250-354 57-153 (234)
84 COG2263 Predicted RNA methylas 98.5 6.3E-07 1.4E-11 83.2 10.2 100 243-369 25-126 (198)
85 COG0742 N6-adenine-specific me 98.5 6.4E-07 1.4E-11 83.3 9.8 83 260-356 42-125 (187)
86 PLN02476 O-methyltransferase 98.5 7.2E-07 1.6E-11 88.1 10.4 102 245-355 102-204 (278)
87 COG1041 Predicted DNA modifica 98.5 7.1E-07 1.5E-11 90.0 10.4 123 250-408 186-310 (347)
88 PRK04338 N(2),N(2)-dimethylgua 98.5 6E-07 1.3E-11 92.6 9.7 93 245-354 41-134 (382)
89 PRK13794 hypothetical protein; 98.5 8.5E-07 1.8E-11 94.0 11.0 163 122-320 123-310 (479)
90 PRK15001 SAM-dependent 23S rib 98.5 8E-07 1.7E-11 91.4 10.4 121 247-406 214-338 (378)
91 PRK11207 tellurite resistance 98.5 9.3E-07 2E-11 82.8 10.0 73 248-323 17-89 (197)
92 smart00650 rADc Ribosomal RNA 98.4 9E-07 1.9E-11 80.6 9.1 85 253-357 5-89 (169)
93 COG2890 HemK Methylase of poly 98.4 9.9E-07 2.1E-11 87.4 9.8 144 239-406 86-236 (280)
94 PRK11188 rrmJ 23S rRNA methylt 98.4 9E-07 2E-11 83.8 9.0 113 259-406 49-163 (209)
95 PRK01544 bifunctional N5-gluta 98.4 1.4E-06 3.1E-11 92.9 11.5 126 261-406 138-267 (506)
96 PRK10742 putative methyltransf 98.4 1.4E-06 3E-11 84.5 9.9 92 250-358 75-177 (250)
97 PRK09489 rsmC 16S ribosomal RN 98.4 2.9E-06 6.2E-11 86.4 12.2 90 246-354 181-270 (342)
98 PF13649 Methyltransf_25: Meth 98.4 7.9E-07 1.7E-11 73.8 6.3 71 265-351 1-73 (101)
99 TIGR00308 TRM1 tRNA(guanine-26 98.3 2.4E-06 5.2E-11 87.9 9.7 97 246-356 26-125 (374)
100 PLN02244 tocopherol O-methyltr 98.3 3.2E-06 6.9E-11 85.8 10.0 75 260-351 117-192 (340)
101 COG2813 RsmC 16S RNA G1207 met 98.3 4.4E-06 9.5E-11 82.9 10.0 92 247-356 144-235 (300)
102 cd02440 AdoMet_MTases S-adenos 98.3 7.7E-06 1.7E-10 64.9 9.6 102 264-407 1-103 (107)
103 PF01596 Methyltransf_3: O-met 98.3 1.9E-06 4.1E-11 81.6 7.0 88 259-355 43-131 (205)
104 TIGR00006 S-adenosyl-methyltra 98.3 5.6E-06 1.2E-10 82.8 10.6 94 253-358 12-105 (305)
105 COG4122 Predicted O-methyltran 98.3 5.5E-06 1.2E-10 79.1 10.0 95 247-354 45-141 (219)
106 COG2520 Predicted methyltransf 98.2 3.1E-06 6.8E-11 85.7 8.6 85 259-360 186-271 (341)
107 PTZ00338 dimethyladenosine tra 98.2 4.8E-06 1E-10 83.0 9.6 100 241-360 15-116 (294)
108 PRK08317 hypothetical protein; 98.2 7.2E-06 1.6E-10 77.0 10.1 71 253-324 11-81 (241)
109 PHA03411 putative methyltransf 98.2 6.1E-06 1.3E-10 81.3 9.6 82 257-360 60-141 (279)
110 PRK11036 putative S-adenosyl-L 98.2 5.5E-06 1.2E-10 80.4 9.3 75 260-351 43-118 (255)
111 TIGR00406 prmA ribosomal prote 98.2 1.2E-05 2.5E-10 79.8 11.7 88 247-353 143-233 (288)
112 PHA03412 putative methyltransf 98.2 2.9E-06 6.3E-11 81.8 7.1 93 243-359 34-128 (241)
113 COG2230 Cfa Cyclopropane fatty 98.2 5.8E-06 1.3E-10 81.7 9.1 74 249-324 60-134 (283)
114 PRK01683 trans-aconitate 2-met 98.2 7.7E-06 1.7E-10 79.1 9.8 74 245-324 15-88 (258)
115 KOG1540 Ubiquinone biosynthesi 98.2 5.5E-06 1.2E-10 80.2 8.4 75 252-326 91-173 (296)
116 PRK15451 tRNA cmo(5)U34 methyl 98.2 7.8E-06 1.7E-10 79.1 9.2 66 259-324 54-121 (247)
117 KOG2915 tRNA(1-methyladenosine 98.1 1.2E-05 2.7E-10 78.3 10.0 106 240-360 86-192 (314)
118 TIGR00477 tehB tellurite resis 98.1 1.3E-05 2.8E-10 75.0 9.8 70 249-322 18-87 (195)
119 KOG2187 tRNA uracil-5-methyltr 98.1 4E-06 8.6E-11 87.9 6.7 114 244-370 360-482 (534)
120 PRK14896 ksgA 16S ribosomal RN 98.1 1.1E-05 2.4E-10 78.7 9.0 87 249-357 17-103 (258)
121 PRK14103 trans-aconitate 2-met 98.1 1.1E-05 2.5E-10 78.1 8.8 66 251-324 19-84 (255)
122 PRK00216 ubiE ubiquinone/menaq 98.1 2.2E-05 4.7E-10 74.1 9.8 74 251-324 41-115 (239)
123 PTZ00098 phosphoethanolamine N 98.1 1.5E-05 3.3E-10 78.0 8.9 70 250-323 41-110 (263)
124 TIGR02021 BchM-ChlM magnesium 98.1 2.4E-05 5.1E-10 74.0 9.8 62 259-323 53-115 (219)
125 PRK12335 tellurite resistance 98.0 2.1E-05 4.5E-10 77.9 9.7 76 256-351 115-190 (287)
126 PRK00274 ksgA 16S ribosomal RN 98.0 1.2E-05 2.7E-10 79.1 8.0 87 251-358 32-118 (272)
127 PF02353 CMAS: Mycolic acid cy 98.0 1.3E-05 2.9E-10 79.1 8.2 73 250-324 51-124 (273)
128 PLN03075 nicotianamine synthas 98.0 2.2E-05 4.8E-10 78.2 9.7 113 261-414 123-241 (296)
129 PRK00517 prmA ribosomal protei 98.0 4.2E-05 9.1E-10 74.2 10.9 60 250-311 106-167 (250)
130 PLN02672 methionine S-methyltr 98.0 2.5E-05 5.4E-10 89.5 10.6 129 262-406 119-276 (1082)
131 PLN02396 hexaprenyldihydroxybe 98.0 2.5E-05 5.4E-10 78.9 9.4 76 258-351 128-204 (322)
132 PLN02589 caffeoyl-CoA O-methyl 98.0 2.7E-05 5.9E-10 75.8 9.3 99 248-354 66-165 (247)
133 PF01728 FtsJ: FtsJ-like methy 98.0 5.3E-06 1.2E-10 76.1 3.9 85 258-358 20-106 (181)
134 PLN02585 magnesium protoporphy 98.0 2.6E-05 5.7E-10 78.5 9.2 59 261-322 144-207 (315)
135 TIGR00740 methyltransferase, p 98.0 3.5E-05 7.5E-10 74.0 9.6 66 259-324 51-118 (239)
136 PRK10258 biotin biosynthesis p 98.0 2E-05 4.2E-10 76.1 7.6 73 244-324 25-97 (251)
137 COG2227 UbiG 2-polyprenyl-3-me 98.0 1.7E-05 3.7E-10 76.3 7.0 110 260-415 58-168 (243)
138 PRK04457 spermidine synthase; 97.9 3.6E-05 7.8E-10 75.5 8.9 80 259-353 64-144 (262)
139 PRK11705 cyclopropane fatty ac 97.9 3.2E-05 7E-10 79.9 9.0 69 250-323 156-224 (383)
140 smart00359 PUA Putative RNA-bi 97.9 2.5E-05 5.5E-10 61.5 6.4 70 125-226 2-73 (77)
141 PRK06202 hypothetical protein; 97.9 2.6E-05 5.7E-10 74.4 7.7 83 251-351 50-135 (232)
142 KOG2904 Predicted methyltransf 97.9 3.9E-05 8.4E-10 75.0 8.4 89 261-360 148-237 (328)
143 PF02390 Methyltransf_4: Putat 97.9 8.7E-05 1.9E-09 69.7 10.3 117 263-411 19-137 (195)
144 PF02384 N6_Mtase: N-6 DNA Met 97.9 4.3E-05 9.4E-10 76.1 8.6 107 240-359 25-139 (311)
145 COG5270 PUA domain (predicted 97.9 2.1E-05 4.5E-10 72.2 5.6 72 123-226 128-199 (202)
146 PRK07580 Mg-protoporphyrin IX 97.8 7.7E-05 1.7E-09 70.5 9.3 59 259-320 61-120 (230)
147 PF05401 NodS: Nodulation prot 97.8 7.7E-05 1.7E-09 70.0 8.5 117 246-406 28-144 (201)
148 PF01269 Fibrillarin: Fibrilla 97.8 0.0001 2.3E-09 70.3 9.4 84 258-355 70-153 (229)
149 PF08241 Methyltransf_11: Meth 97.8 3E-05 6.4E-10 62.0 4.9 94 266-406 1-95 (95)
150 PLN02336 phosphoethanolamine N 97.8 8E-05 1.7E-09 78.6 9.3 71 251-324 256-326 (475)
151 COG0293 FtsJ 23S rRNA methylas 97.8 5E-05 1.1E-09 71.7 6.6 84 259-360 43-126 (205)
152 PF01795 Methyltransf_5: MraW 97.8 1.6E-05 3.6E-10 79.5 3.5 95 253-358 12-106 (310)
153 TIGR01934 MenG_MenH_UbiE ubiqu 97.8 0.00012 2.6E-09 68.3 9.1 71 252-324 30-100 (223)
154 TIGR03587 Pse_Me-ase pseudamin 97.8 7.7E-05 1.7E-09 70.5 7.6 60 258-323 40-99 (204)
155 TIGR03438 probable methyltrans 97.8 4.2E-05 9E-10 76.4 6.1 93 229-324 34-127 (301)
156 PRK05785 hypothetical protein; 97.7 6.7E-05 1.5E-09 71.9 7.1 66 261-351 51-116 (226)
157 PRK00811 spermidine synthase; 97.7 0.00019 4.2E-09 71.1 10.2 79 261-354 76-159 (283)
158 PF03848 TehB: Tellurite resis 97.7 0.00017 3.7E-09 67.7 9.2 75 244-323 14-88 (192)
159 PRK06922 hypothetical protein; 97.7 0.00013 2.9E-09 79.4 9.5 83 254-351 411-493 (677)
160 TIGR00755 ksgA dimethyladenosi 97.7 0.00012 2.7E-09 71.0 8.2 69 252-325 20-88 (253)
161 PRK11727 23S rRNA mA1618 methy 97.7 0.00017 3.8E-09 72.8 9.3 88 261-360 114-204 (321)
162 PRK05134 bifunctional 3-demeth 97.6 0.00033 7.2E-09 66.6 10.3 84 251-352 38-121 (233)
163 KOG2730 Methylase [General fun 97.6 5.6E-05 1.2E-09 71.8 4.7 86 261-360 94-180 (263)
164 PRK15068 tRNA mo(5)U34 methylt 97.6 0.00035 7.5E-09 70.6 10.4 84 250-351 111-195 (322)
165 COG2264 PrmA Ribosomal protein 97.6 0.00018 4E-09 71.7 8.1 65 247-313 146-212 (300)
166 smart00828 PKS_MT Methyltransf 97.6 0.00025 5.3E-09 67.0 8.5 60 263-323 1-61 (224)
167 COG0220 Predicted S-adenosylme 97.6 0.00049 1.1E-08 66.3 10.5 115 263-409 50-166 (227)
168 TIGR02716 C20_methyl_CrtF C-20 97.6 0.00038 8.3E-09 69.3 10.2 73 249-323 137-210 (306)
169 PF06325 PrmA: Ribosomal prote 97.6 0.00019 4.1E-09 71.7 7.9 65 247-313 145-211 (295)
170 COG0275 Predicted S-adenosylme 97.6 0.00048 1E-08 68.5 10.5 95 253-358 15-109 (314)
171 PRK11088 rrmA 23S rRNA methylt 97.6 0.00023 4.9E-09 69.9 8.2 62 259-325 83-146 (272)
172 TIGR00432 arcsn_tRNA_tgt tRNA- 97.6 0.00013 2.7E-09 78.4 6.9 74 121-226 464-537 (540)
173 TIGR01983 UbiG ubiquinone bios 97.6 0.00037 8E-09 65.6 9.4 75 260-351 44-118 (224)
174 KOG3420 Predicted RNA methylas 97.6 8.4E-05 1.8E-09 66.5 4.3 78 260-355 47-124 (185)
175 TIGR02072 BioC biotin biosynth 97.6 0.00018 3.8E-09 67.7 6.9 90 245-354 15-107 (240)
176 COG4106 Tam Trans-aconitate me 97.5 0.00018 3.9E-09 68.4 6.7 62 258-325 27-88 (257)
177 PLN02336 phosphoethanolamine N 97.5 0.00026 5.7E-09 74.7 8.7 91 246-354 22-112 (475)
178 PRK14901 16S rRNA methyltransf 97.5 0.00024 5.2E-09 74.5 8.2 72 13-107 147-218 (434)
179 PLN02490 MPBQ/MSBQ methyltrans 97.5 0.00027 5.9E-09 71.9 7.9 73 260-351 112-184 (340)
180 COG0116 Predicted N6-adenine-s 97.5 0.00058 1.3E-08 70.0 9.8 88 254-356 184-310 (381)
181 COG2521 Predicted archaeal met 97.4 7.9E-05 1.7E-09 71.5 2.9 91 255-360 128-221 (287)
182 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.00058 1.3E-08 75.9 10.1 84 260-356 189-314 (702)
183 TIGR00452 methyltransferase, p 97.4 0.001 2.3E-08 67.0 10.7 84 239-324 95-183 (314)
184 PRK14903 16S rRNA methyltransf 97.4 0.00047 1E-08 72.4 8.5 72 13-107 132-203 (431)
185 TIGR00417 speE spermidine synt 97.4 0.00086 1.9E-08 65.9 9.9 79 261-354 72-154 (270)
186 COG0030 KsgA Dimethyladenosine 97.4 0.00048 1.1E-08 67.4 7.6 101 241-360 9-110 (259)
187 KOG2523 Predicted RNA-binding 97.4 0.00011 2.3E-09 66.4 2.7 96 100-226 66-168 (181)
188 KOG2671 Putative RNA methylase 97.4 0.00013 2.9E-09 73.3 3.6 91 250-357 197-296 (421)
189 KOG0024 Sorbitol dehydrogenase 97.4 0.0017 3.8E-08 65.1 11.4 87 227-319 135-223 (354)
190 PLN02366 spermidine synthase 97.4 0.0013 2.8E-08 66.1 10.7 82 260-355 90-175 (308)
191 PF08242 Methyltransf_12: Meth 97.4 4.1E-05 8.8E-10 62.9 -0.2 72 266-351 1-72 (99)
192 PRK03612 spermidine synthase; 97.3 0.00063 1.4E-08 73.1 8.7 82 260-356 296-384 (521)
193 PRK10901 16S rRNA methyltransf 97.3 0.00096 2.1E-08 69.9 9.7 71 13-107 141-211 (427)
194 PRK01581 speE spermidine synth 97.3 0.00083 1.8E-08 68.8 8.5 78 262-354 151-235 (374)
195 TIGR00563 rsmB ribosomal RNA s 97.3 0.0011 2.5E-08 69.2 9.8 96 13-136 135-230 (426)
196 KOG1663 O-methyltransferase [S 97.3 0.0011 2.3E-08 63.6 8.1 102 243-353 55-157 (237)
197 KOG1271 Methyltransferases [Ge 97.2 0.00055 1.2E-08 63.6 5.9 61 263-324 69-130 (227)
198 PRK05429 gamma-glutamyl kinase 97.2 0.00048 1E-08 70.9 6.1 64 121-216 278-342 (372)
199 PF07021 MetW: Methionine bios 97.2 0.00099 2.2E-08 62.4 7.4 71 259-351 11-81 (193)
200 PRK11760 putative 23S rRNA C24 97.2 0.00072 1.6E-08 68.6 6.5 78 259-361 209-286 (357)
201 PRK01544 bifunctional N5-gluta 97.1 0.0027 5.9E-08 68.0 10.9 119 261-412 347-467 (506)
202 TIGR02081 metW methionine bios 97.1 0.0016 3.5E-08 60.5 8.0 55 260-323 12-66 (194)
203 COG1889 NOP1 Fibrillarin-like 97.1 0.0017 3.6E-08 61.3 7.7 83 258-355 73-155 (231)
204 TIGR03840 TMPT_Se_Te thiopurin 97.1 0.0018 4E-08 61.6 8.1 62 260-324 33-106 (213)
205 smart00138 MeTrc Methyltransfe 97.0 0.0015 3.3E-08 64.1 6.9 115 260-415 98-248 (264)
206 COG4076 Predicted RNA methylas 97.0 0.00071 1.5E-08 63.1 4.2 61 263-326 34-94 (252)
207 KOG2782 Putative SAM dependent 97.0 0.00059 1.3E-08 64.9 3.6 99 253-360 35-133 (303)
208 PF03291 Pox_MCEL: mRNA cappin 97.0 0.0065 1.4E-07 61.8 11.1 114 261-408 62-186 (331)
209 TIGR01444 fkbM_fam methyltrans 96.9 0.0032 6.9E-08 55.0 7.3 57 264-321 1-57 (143)
210 PRK04270 H/ACA RNA-protein com 96.9 0.002 4.2E-08 64.6 6.4 73 122-226 224-296 (300)
211 PRK14902 16S rRNA methyltransf 96.9 0.0032 7E-08 66.2 8.4 96 13-136 147-242 (444)
212 PF02527 GidB: rRNA small subu 96.9 0.0042 9.1E-08 58.0 8.2 76 264-356 51-126 (184)
213 PF04445 SAM_MT: Putative SAM- 96.9 0.0019 4.1E-08 62.4 5.9 88 250-354 62-160 (234)
214 TIGR02987 met_A_Alw26 type II 96.9 0.0026 5.7E-08 68.2 7.7 90 261-360 31-127 (524)
215 PF00398 RrnaAD: Ribosomal RNA 96.8 0.0032 6.9E-08 61.6 7.4 71 251-326 20-90 (262)
216 PF13489 Methyltransf_23: Meth 96.8 0.0046 1E-07 54.4 7.5 50 249-301 9-59 (161)
217 KOG1661 Protein-L-isoaspartate 96.8 0.0032 7E-08 59.7 6.7 95 246-355 63-172 (237)
218 KOG0820 Ribosomal RNA adenine 96.8 0.0046 9.9E-08 60.8 7.9 83 240-325 36-120 (315)
219 PF12147 Methyltransf_20: Puta 96.8 0.0094 2E-07 59.2 10.1 85 240-324 114-200 (311)
220 TIGR00478 tly hemolysin TlyA f 96.8 0.0012 2.6E-08 63.6 3.9 44 260-305 74-118 (228)
221 PRK13255 thiopurine S-methyltr 96.7 0.0071 1.5E-07 57.8 8.9 64 258-324 34-109 (218)
222 TIGR01027 proB glutamate 5-kin 96.7 0.0026 5.7E-08 65.4 5.9 63 122-216 271-334 (363)
223 COG1370 Prefoldin, molecular c 96.7 0.005 1.1E-07 55.0 6.8 75 121-227 78-152 (155)
224 cd00315 Cyt_C5_DNA_methylase C 96.7 0.0027 5.8E-08 62.7 5.7 76 264-360 2-77 (275)
225 COG0357 GidB Predicted S-adeno 96.7 0.008 1.7E-07 57.5 8.6 83 262-360 68-150 (215)
226 TIGR00425 CBF5 rRNA pseudourid 96.7 0.0031 6.8E-08 63.8 6.1 74 122-227 236-309 (322)
227 PF01861 DUF43: Protein of unk 96.6 0.0035 7.5E-08 60.7 5.8 138 238-393 20-168 (243)
228 KOG1270 Methyltransferases [Co 96.6 0.0032 6.9E-08 61.6 5.5 46 258-306 86-131 (282)
229 KOG2899 Predicted methyltransf 96.5 0.0049 1.1E-07 59.7 5.9 48 261-309 58-105 (288)
230 COG0286 HsdM Type I restrictio 96.5 0.0069 1.5E-07 64.7 7.5 110 241-360 166-279 (489)
231 KOG1596 Fibrillarin and relate 96.5 0.004 8.7E-08 60.2 5.0 95 250-358 139-239 (317)
232 PF02005 TRM: N2,N2-dimethylgu 96.4 0.0035 7.7E-08 64.7 4.7 79 261-353 49-129 (377)
233 KOG3191 Predicted N6-DNA-methy 96.4 0.017 3.8E-07 53.7 8.7 83 259-358 41-123 (209)
234 COG1549 Queuine tRNA-ribosyltr 96.4 0.0039 8.5E-08 65.5 4.8 54 140-226 462-515 (519)
235 PF13679 Methyltransf_32: Meth 96.4 0.0094 2E-07 52.8 6.5 61 259-319 23-89 (141)
236 PLN02823 spermine synthase 96.3 0.019 4.2E-07 58.4 9.2 78 262-354 104-185 (336)
237 KOG1541 Predicted protein carb 96.1 0.019 4E-07 55.1 7.4 61 241-304 28-90 (270)
238 PF05185 PRMT5: PRMT5 arginine 96.0 0.021 4.5E-07 60.4 8.1 65 262-326 187-255 (448)
239 PRK14904 16S rRNA methyltransf 95.9 0.017 3.8E-07 60.8 6.8 52 14-66 150-201 (445)
240 KOG4589 Cell division protein 95.9 0.011 2.4E-07 55.3 4.5 51 245-295 46-103 (232)
241 PRK04148 hypothetical protein; 95.8 0.042 9E-07 48.8 7.8 58 256-323 11-69 (134)
242 COG3897 Predicted methyltransf 95.8 0.012 2.7E-07 55.3 4.5 59 261-322 79-137 (218)
243 COG1867 TRM1 N2,N2-dimethylgua 95.7 0.046 1E-06 55.9 8.6 77 262-353 53-129 (380)
244 PF01564 Spermine_synth: Sperm 95.7 0.043 9.4E-07 53.4 8.2 86 254-355 70-160 (246)
245 PF00891 Methyltransf_2: O-met 95.5 0.063 1.4E-06 51.4 8.7 103 253-406 92-197 (241)
246 COG3963 Phospholipid N-methylt 95.4 0.071 1.5E-06 49.1 7.8 113 254-406 41-154 (194)
247 COG0421 SpeE Spermidine syntha 95.2 0.077 1.7E-06 52.8 8.4 85 253-353 69-157 (282)
248 KOG2078 tRNA modification enzy 95.2 0.014 2.9E-07 60.6 3.1 65 259-326 247-313 (495)
249 PF00145 DNA_methylase: C-5 cy 95.2 0.032 6.9E-07 55.0 5.6 75 264-360 2-76 (335)
250 KOG1098 Putative SAM-dependent 95.2 0.015 3.3E-07 62.6 3.3 39 259-297 42-80 (780)
251 PF10294 Methyltransf_16: Puta 95.1 0.05 1.1E-06 50.0 6.0 62 259-322 43-107 (173)
252 PF08003 Methyltransf_9: Prote 94.9 0.18 3.9E-06 50.7 9.9 60 251-312 105-164 (315)
253 KOG1975 mRNA cap methyltransfe 94.8 0.14 2.9E-06 51.8 8.7 72 249-324 107-184 (389)
254 PRK13256 thiopurine S-methyltr 94.8 0.092 2E-06 50.6 7.4 65 258-325 40-116 (226)
255 TIGR03439 methyl_EasF probable 94.2 0.068 1.5E-06 54.1 5.2 65 260-324 75-144 (319)
256 PF08123 DOT1: Histone methyla 94.1 0.12 2.6E-06 49.1 6.3 71 254-325 35-114 (205)
257 COG1568 Predicted methyltransf 94.1 0.099 2.1E-06 51.7 5.8 84 262-360 153-236 (354)
258 PRK13402 gamma-glutamyl kinase 94.0 0.11 2.3E-06 53.7 6.1 63 122-216 275-338 (368)
259 PF13578 Methyltransf_24: Meth 94.0 0.021 4.6E-07 47.5 0.8 81 266-360 1-84 (106)
260 KOG4300 Predicted methyltransf 93.9 0.21 4.6E-06 47.7 7.4 80 256-351 71-151 (252)
261 PF01189 Nol1_Nop2_Fmu: NOL1/N 93.7 0.088 1.9E-06 52.3 4.9 48 35-105 1-48 (283)
262 PF05219 DREV: DREV methyltran 93.3 0.14 3E-06 50.3 5.4 61 239-304 66-134 (265)
263 PF05724 TPMT: Thiopurine S-me 93.3 0.13 2.8E-06 49.2 5.0 66 257-325 33-110 (218)
264 TIGR00497 hsdM type I restrict 92.9 0.48 1E-05 50.8 9.2 106 240-358 194-306 (501)
265 TIGR00675 dcm DNA-methyltransf 92.7 0.24 5.3E-06 49.8 6.3 74 265-360 1-74 (315)
266 PF04816 DUF633: Family of unk 92.7 0.5 1.1E-05 44.9 8.0 60 265-325 1-61 (205)
267 PF01555 N6_N4_Mtase: DNA meth 92.6 0.2 4.4E-06 46.4 5.2 43 259-304 189-231 (231)
268 PRK11524 putative methyltransf 92.6 0.23 5E-06 49.2 5.9 46 260-308 207-252 (284)
269 KOG1253 tRNA methyltransferase 92.4 0.077 1.7E-06 56.1 2.2 85 258-353 106-191 (525)
270 COG1189 Predicted rRNA methyla 92.2 0.19 4E-06 48.8 4.4 78 261-358 79-157 (245)
271 KOG1099 SAM-dependent methyltr 92.1 0.13 2.8E-06 49.7 3.2 52 263-325 43-102 (294)
272 PF05971 Methyltransf_10: Prot 92.0 0.44 9.6E-06 47.8 7.1 86 262-358 103-190 (299)
273 PF06080 DUF938: Protein of un 91.8 0.64 1.4E-05 44.2 7.5 84 260-351 24-108 (204)
274 PF11599 AviRa: RRNA methyltra 91.8 0.49 1.1E-05 45.4 6.6 63 245-307 32-98 (246)
275 KOG1500 Protein arginine N-met 91.8 0.53 1.2E-05 47.9 7.2 59 261-322 177-236 (517)
276 KOG1227 Putative methyltransfe 91.4 0.09 1.9E-06 52.5 1.4 63 261-324 194-257 (351)
277 KOG3010 Methyltransferase [Gen 91.1 0.32 6.9E-06 47.3 4.7 53 249-304 20-73 (261)
278 KOG1499 Protein arginine N-met 90.4 0.76 1.7E-05 46.8 6.9 63 259-324 58-121 (346)
279 PF09243 Rsm22: Mitochondrial 90.3 0.47 1E-05 46.9 5.3 49 261-309 33-81 (274)
280 PHA01634 hypothetical protein 89.7 0.87 1.9E-05 40.3 5.8 48 261-310 28-75 (156)
281 COG4976 Predicted methyltransf 89.5 0.27 5.9E-06 47.6 2.8 46 257-305 121-166 (287)
282 COG0270 Dcm Site-specific DNA 89.3 1.7 3.8E-05 43.9 8.7 78 263-360 4-82 (328)
283 COG0263 ProB Glutamate 5-kinas 88.2 0.88 1.9E-05 46.5 5.5 40 124-163 280-320 (369)
284 PRK10458 DNA cytosine methylas 87.5 1.9 4.1E-05 46.0 7.8 94 262-360 88-184 (467)
285 PF05891 Methyltransf_PK: AdoM 87.4 2.1 4.5E-05 41.1 7.3 103 261-406 55-159 (218)
286 PRK13699 putative methylase; P 86.8 1.3 2.9E-05 42.5 5.7 49 259-310 161-209 (227)
287 KOG2361 Predicted methyltransf 86.6 0.9 2E-05 44.3 4.3 81 239-323 52-133 (264)
288 PF04989 CmcI: Cephalosporin h 85.2 0.87 1.9E-05 43.3 3.4 84 240-325 10-98 (206)
289 PLN02232 ubiquinone biosynthes 85.2 1.2 2.5E-05 40.2 4.2 47 290-351 1-50 (160)
290 TIGR00446 nop2p NOL1/NOP2/sun 84.6 1.6 3.5E-05 42.7 5.2 20 48-67 1-20 (264)
291 COG4262 Predicted spermidine s 84.4 6 0.00013 41.0 9.1 87 259-360 287-380 (508)
292 COG2933 Predicted SAM-dependen 83.9 2.2 4.7E-05 42.3 5.6 70 259-353 209-278 (358)
293 COG0500 SmtA SAM-dependent met 82.1 5.7 0.00012 31.9 6.8 58 265-323 52-109 (257)
294 COG1064 AdhP Zn-dependent alco 81.4 4.5 9.8E-05 41.4 7.1 52 256-313 161-213 (339)
295 PRK00536 speE spermidine synth 79.2 9.9 0.00021 37.5 8.4 76 256-353 68-147 (262)
296 PRK08557 hypothetical protein; 78.1 6.1 0.00013 41.6 7.0 152 123-320 77-243 (417)
297 PF07091 FmrO: Ribosomal RNA m 76.8 9.1 0.0002 37.5 7.3 63 259-323 103-165 (251)
298 KOG3115 Methyltransferase-like 75.6 7.7 0.00017 37.2 6.2 63 262-325 61-130 (249)
299 KOG1501 Arginine N-methyltrans 74.7 5.6 0.00012 42.1 5.4 58 264-323 69-127 (636)
300 PF03059 NAS: Nicotianamine sy 73.3 19 0.00041 35.9 8.7 75 263-352 122-199 (276)
301 PF07279 DUF1442: Protein of u 72.9 23 0.00049 34.1 8.7 88 252-354 32-124 (218)
302 cd08283 FDH_like_1 Glutathione 72.1 9.6 0.00021 38.9 6.6 52 253-305 176-228 (386)
303 COG2384 Predicted SAM-dependen 70.8 12 0.00026 36.1 6.3 65 260-325 15-80 (226)
304 KOG1562 Spermidine synthase [A 70.4 18 0.0004 36.5 7.7 117 261-416 121-242 (337)
305 KOG3987 Uncharacterized conser 70.0 1.2 2.6E-05 42.6 -0.5 61 239-304 86-152 (288)
306 KOG0022 Alcohol dehydrogenase, 63.9 14 0.00029 37.8 5.4 56 253-312 184-239 (375)
307 PLN03209 translocon at the inn 63.8 40 0.00087 37.1 9.4 67 258-325 76-151 (576)
308 PLN02540 methylenetetrahydrofo 63.8 13 0.00028 40.6 5.7 62 262-323 28-99 (565)
309 PF05050 Methyltransf_21: Meth 63.1 14 0.0003 32.2 4.9 39 267-305 1-42 (167)
310 PRK11933 yebU rRNA (cytosine-C 62.9 3.2 6.9E-05 44.4 0.9 54 171-224 3-61 (470)
311 PRK05599 hypothetical protein; 61.9 20 0.00043 34.0 6.2 57 268-324 5-61 (246)
312 COG1062 AdhC Zn-dependent alco 61.8 17 0.00037 37.4 5.7 56 253-312 177-232 (366)
313 PRK07102 short chain dehydroge 61.6 25 0.00054 32.9 6.7 60 264-324 3-63 (243)
314 PRK08945 putative oxoacyl-(acy 60.9 23 0.0005 33.2 6.3 63 259-322 9-72 (247)
315 PF10354 DUF2431: Domain of un 59.0 33 0.00072 31.3 6.7 80 270-360 3-90 (166)
316 PF11899 DUF3419: Protein of u 58.5 20 0.00044 37.3 5.8 62 239-303 12-74 (380)
317 COG2961 ComJ Protein involved 57.9 25 0.00054 34.7 5.9 98 246-360 71-171 (279)
318 PRK07904 short chain dehydroge 56.9 30 0.00065 33.0 6.4 63 261-324 7-72 (253)
319 PRK06197 short chain dehydroge 56.6 55 0.0012 32.0 8.4 63 261-324 15-79 (306)
320 KOG1197 Predicted quinone oxid 56.3 24 0.00053 35.1 5.6 61 244-305 128-190 (336)
321 PF02254 TrkA_N: TrkA-N domain 54.7 16 0.00034 30.4 3.6 69 270-356 4-73 (116)
322 COG4798 Predicted methyltransf 52.6 17 0.00037 34.7 3.7 43 255-297 42-84 (238)
323 PRK12939 short chain dehydroge 52.6 43 0.00093 31.1 6.6 62 261-324 6-68 (250)
324 COG1063 Tdh Threonine dehydrog 52.1 33 0.0007 34.9 6.1 60 244-304 148-211 (350)
325 KOG2651 rRNA adenine N-6-methy 51.8 44 0.00095 35.0 6.8 49 252-302 144-192 (476)
326 PRK06194 hypothetical protein; 51.7 42 0.00091 32.2 6.6 61 262-324 6-67 (287)
327 PF04378 RsmJ: Ribosomal RNA s 50.3 20 0.00043 35.1 4.0 76 269-358 63-138 (245)
328 PRK07890 short chain dehydroge 50.0 49 0.0011 31.0 6.6 62 261-324 4-66 (258)
329 PRK07326 short chain dehydroge 47.2 50 0.0011 30.5 6.2 60 262-324 6-66 (237)
330 PF04672 Methyltransf_19: S-ad 46.9 28 0.00061 34.5 4.5 75 253-327 59-136 (267)
331 COG0863 DNA modification methy 46.6 45 0.00097 32.4 5.9 49 259-310 220-268 (302)
332 PF01739 CheR: CheR methyltran 46.5 22 0.00047 33.5 3.5 44 261-304 31-82 (196)
333 PRK08643 acetoin reductase; Va 45.9 59 0.0013 30.5 6.5 59 264-324 4-63 (256)
334 PRK12429 3-hydroxybutyrate deh 45.7 64 0.0014 30.1 6.7 61 262-324 4-65 (258)
335 cd08237 ribitol-5-phosphate_DH 45.5 47 0.001 33.2 6.0 47 258-304 160-207 (341)
336 TIGR03201 dearomat_had 6-hydro 44.6 62 0.0014 32.3 6.7 50 257-312 162-212 (349)
337 KOG2360 Proliferation-associat 43.3 51 0.0011 34.4 5.8 51 43-106 129-179 (413)
338 PRK13394 3-hydroxybutyrate deh 43.0 70 0.0015 30.0 6.5 61 262-324 7-68 (262)
339 COG3129 Predicted SAM-dependen 42.9 47 0.001 32.6 5.1 87 260-358 77-166 (292)
340 PRK06181 short chain dehydroge 41.8 90 0.0019 29.4 7.1 59 264-324 3-62 (263)
341 PRK07478 short chain dehydroge 41.7 78 0.0017 29.7 6.6 61 262-324 6-67 (254)
342 KOG0822 Protein kinase inhibit 41.3 49 0.0011 36.0 5.4 63 264-327 370-436 (649)
343 PF10237 N6-adenineMlase: Prob 41.2 68 0.0015 29.4 5.8 87 249-358 12-99 (162)
344 KOG1709 Guanidinoacetate methy 40.9 93 0.002 30.3 6.7 78 260-353 100-177 (271)
345 PRK10611 chemotaxis methyltran 40.5 36 0.00078 34.0 4.2 43 263-305 117-166 (287)
346 TIGR00676 fadh2 5,10-methylene 40.1 63 0.0014 31.8 5.8 61 263-323 29-99 (272)
347 cd05188 MDR Medium chain reduc 39.7 94 0.002 28.8 6.8 43 259-303 132-175 (271)
348 PRK01747 mnmC bifunctional tRN 39.4 72 0.0016 35.4 6.7 47 251-297 46-104 (662)
349 PRK07454 short chain dehydroge 39.1 69 0.0015 29.7 5.8 61 262-324 6-67 (241)
350 KOG3673 FtsJ-like RNA methyltr 38.7 9.7 0.00021 41.2 -0.2 18 265-282 271-288 (845)
351 PRK07024 short chain dehydroge 38.4 46 0.00099 31.5 4.5 58 264-324 4-62 (257)
352 PRK05786 fabG 3-ketoacyl-(acyl 38.4 96 0.0021 28.6 6.6 59 262-323 5-64 (238)
353 KOG2414 Putative Xaa-Pro amino 38.3 22 0.00047 37.4 2.2 51 347-397 308-359 (488)
354 PF00107 ADH_zinc_N: Zinc-bind 38.2 42 0.00091 28.1 3.7 35 272-312 2-36 (130)
355 PF02086 MethyltransfD12: D12 37.9 44 0.00096 31.8 4.3 37 261-300 20-56 (260)
356 PRK06172 short chain dehydroge 37.7 1.2E+02 0.0026 28.3 7.2 61 262-324 7-68 (253)
357 PRK06914 short chain dehydroge 37.7 70 0.0015 30.5 5.7 61 263-324 4-66 (280)
358 PRK08251 short chain dehydroge 37.3 1.1E+02 0.0023 28.6 6.7 61 263-324 3-65 (248)
359 PRK12826 3-ketoacyl-(acyl-carr 36.5 1.1E+02 0.0023 28.4 6.6 61 262-324 6-67 (251)
360 TIGR02822 adh_fam_2 zinc-bindi 36.4 98 0.0021 30.8 6.7 54 254-313 158-212 (329)
361 PRK06125 short chain dehydroge 36.4 1E+02 0.0022 29.1 6.4 61 262-323 7-68 (259)
362 PRK06940 short chain dehydroge 36.1 1.2E+02 0.0026 29.3 7.0 51 273-324 11-61 (275)
363 PRK06139 short chain dehydroge 36.0 1.1E+02 0.0024 30.7 7.0 62 261-324 6-68 (330)
364 COG0144 Sun tRNA and rRNA cyto 35.5 14 0.00031 37.9 0.4 50 168-217 50-101 (355)
365 PRK06949 short chain dehydroge 35.5 84 0.0018 29.4 5.8 61 261-323 8-69 (258)
366 PRK07523 gluconate 5-dehydroge 35.5 1.1E+02 0.0024 28.7 6.6 61 261-323 9-70 (255)
367 PRK07831 short chain dehydroge 35.4 1.3E+02 0.0028 28.4 7.0 64 261-324 16-81 (262)
368 TIGR02825 B4_12hDH leukotriene 35.2 90 0.0019 30.6 6.1 53 255-313 132-186 (325)
369 cd08255 2-desacetyl-2-hydroxye 35.0 1.1E+02 0.0024 29.0 6.6 50 254-304 90-140 (277)
370 PF06962 rRNA_methylase: Putat 34.8 98 0.0021 27.7 5.6 37 288-324 1-38 (140)
371 PRK07677 short chain dehydroge 34.4 1.4E+02 0.0031 27.9 7.1 59 263-323 2-61 (252)
372 PRK06141 ornithine cyclodeamin 34.2 1.5E+02 0.0032 29.8 7.5 65 247-311 110-175 (314)
373 PF01488 Shikimate_DH: Shikima 34.1 1.4E+02 0.0031 25.8 6.5 56 261-321 11-68 (135)
374 PF00448 SRP54: SRP54-type pro 33.7 36 0.00077 31.9 2.8 40 273-312 12-58 (196)
375 PRK05876 short chain dehydroge 33.4 1.2E+02 0.0026 29.3 6.5 61 262-324 6-67 (275)
376 COG1352 CheR Methylase of chem 33.1 73 0.0016 31.6 5.0 43 262-304 97-147 (268)
377 TIGR00677 fadh2_euk methylenet 32.7 80 0.0017 31.4 5.2 61 263-323 30-100 (281)
378 PRK07340 ornithine cyclodeamin 32.0 1.6E+02 0.0035 29.4 7.4 64 248-311 111-175 (304)
379 cd08254 hydroxyacyl_CoA_DH 6-h 31.9 1.2E+02 0.0027 29.4 6.5 51 256-312 160-211 (338)
380 PF03657 UPF0113: Uncharacteri 31.8 60 0.0013 29.8 3.8 40 122-163 90-129 (162)
381 COG0685 MetF 5,10-methylenetet 31.7 2E+02 0.0043 28.7 7.9 78 245-322 30-117 (291)
382 PRK05875 short chain dehydroge 31.5 1.4E+02 0.003 28.4 6.6 63 261-324 6-70 (276)
383 PF00106 adh_short: short chai 31.4 1.8E+02 0.0039 25.0 6.9 87 268-360 5-95 (167)
384 PRK07814 short chain dehydroge 31.1 1.1E+02 0.0023 29.1 5.7 62 261-324 9-71 (263)
385 PRK09291 short chain dehydroge 30.8 1E+02 0.0023 28.7 5.5 59 264-324 4-63 (257)
386 cd08294 leukotriene_B4_DH_like 30.2 1.2E+02 0.0026 29.4 6.1 53 255-313 137-191 (329)
387 PRK05866 short chain dehydroge 30.1 1.1E+02 0.0024 29.9 5.7 61 262-324 40-101 (293)
388 KOG0821 Predicted ribosomal RN 29.9 1.1E+02 0.0023 30.0 5.2 64 258-324 47-110 (326)
389 PRK07576 short chain dehydroge 29.8 1.2E+02 0.0025 29.0 5.7 61 261-323 8-69 (264)
390 PLN02780 ketoreductase/ oxidor 29.3 1.4E+02 0.003 29.9 6.4 61 261-322 52-114 (320)
391 PRK05867 short chain dehydroge 29.3 1.9E+02 0.0042 27.0 7.1 62 261-324 8-70 (253)
392 PRK07035 short chain dehydroge 29.2 1.2E+02 0.0026 28.3 5.7 61 262-324 8-69 (252)
393 PRK08217 fabG 3-ketoacyl-(acyl 29.2 2E+02 0.0044 26.5 7.2 61 261-323 4-65 (253)
394 COG5379 BtaA S-adenosylmethion 29.1 1E+02 0.0022 31.4 5.1 65 239-306 40-105 (414)
395 PRK08339 short chain dehydroge 29.0 2.1E+02 0.0046 27.2 7.5 62 262-324 8-70 (263)
396 PRK08267 short chain dehydroge 28.8 94 0.002 29.3 4.9 54 268-324 6-60 (260)
397 COG1748 LYS9 Saccharopine dehy 28.6 82 0.0018 33.0 4.6 55 264-324 3-59 (389)
398 PRK08063 enoyl-(acyl carrier p 28.0 1.8E+02 0.004 26.9 6.7 62 261-324 3-66 (250)
399 PRK09424 pntA NAD(P) transhydr 27.7 1E+02 0.0022 33.5 5.3 48 259-312 162-210 (509)
400 PRK05653 fabG 3-ketoacyl-(acyl 27.3 1.9E+02 0.004 26.5 6.5 61 262-324 5-66 (246)
401 PF09157 TruB-C_2: Pseudouridi 27.2 1.3E+02 0.0027 22.1 4.3 33 125-163 2-34 (58)
402 PLN03154 putative allyl alcoho 26.9 1.6E+02 0.0035 29.5 6.4 53 256-313 153-207 (348)
403 TIGR03206 benzo_BadH 2-hydroxy 26.6 1.5E+02 0.0032 27.5 5.8 61 262-324 3-64 (250)
404 cd08238 sorbose_phosphate_red 26.6 1.2E+02 0.0026 31.3 5.5 49 257-305 171-222 (410)
405 TIGR01963 PHB_DH 3-hydroxybuty 26.4 1.5E+02 0.0032 27.6 5.7 56 268-324 6-62 (255)
406 PRK05650 short chain dehydroge 26.3 1.4E+02 0.0031 28.3 5.6 58 265-324 3-61 (270)
407 KOG1269 SAM-dependent methyltr 26.2 90 0.0019 32.4 4.4 74 251-326 100-174 (364)
408 PRK05717 oxidoreductase; Valid 26.1 1.6E+02 0.0035 27.6 6.0 58 262-324 10-68 (255)
409 PRK09186 flagellin modificatio 26.1 1.4E+02 0.0029 27.9 5.4 62 262-324 4-67 (256)
410 PF07015 VirC1: VirC1 protein; 26.0 58 0.0013 31.6 2.8 80 273-361 13-99 (231)
411 PF05206 TRM13: Methyltransfer 25.9 1.1E+02 0.0023 30.2 4.7 41 260-300 17-61 (259)
412 TIGR03451 mycoS_dep_FDH mycoth 25.8 1.5E+02 0.0032 29.7 5.9 52 256-312 171-223 (358)
413 PRK07231 fabG 3-ketoacyl-(acyl 25.7 1.3E+02 0.0029 27.8 5.2 60 262-324 5-65 (251)
414 PRK08213 gluconate 5-dehydroge 25.5 1.5E+02 0.0033 27.8 5.6 62 261-324 11-73 (259)
415 PLN02740 Alcohol dehydrogenase 25.5 1.5E+02 0.0032 30.2 5.9 51 256-312 193-245 (381)
416 PRK06101 short chain dehydroge 25.4 1.2E+02 0.0026 28.3 4.9 52 268-324 6-58 (240)
417 PF02636 Methyltransf_28: Puta 25.3 1E+02 0.0022 29.7 4.5 47 262-308 19-72 (252)
418 COG3510 CmcI Cephalosporin hyd 25.2 81 0.0017 30.2 3.5 60 260-324 68-130 (237)
419 COG0300 DltE Short-chain dehyd 25.0 1.6E+02 0.0035 29.2 5.8 91 261-360 5-96 (265)
420 TIGR03366 HpnZ_proposed putati 24.8 2E+02 0.0044 27.7 6.5 51 255-312 114-167 (280)
421 TIGR02818 adh_III_F_hyde S-(hy 24.7 1.7E+02 0.0038 29.5 6.2 52 256-312 180-232 (368)
422 PLN00198 anthocyanidin reducta 24.4 1.4E+02 0.003 29.6 5.4 66 257-324 4-71 (338)
423 PRK08703 short chain dehydroge 24.4 2.6E+02 0.0057 25.8 7.0 61 261-322 5-66 (239)
424 PF00072 Response_reg: Respons 24.2 82 0.0018 25.1 3.1 66 289-368 1-69 (112)
425 PRK07774 short chain dehydroge 24.0 2.4E+02 0.0051 26.1 6.6 62 261-324 5-67 (250)
426 PRK05854 short chain dehydroge 24.0 2.9E+02 0.0063 27.2 7.5 62 262-324 14-77 (313)
427 PRK07825 short chain dehydroge 23.9 1.7E+02 0.0036 27.8 5.6 57 262-324 5-62 (273)
428 KOG2352 Predicted spermine/spe 23.8 55 0.0012 35.1 2.3 87 262-357 296-382 (482)
429 PRK06124 gluconate 5-dehydroge 23.8 3E+02 0.0065 25.7 7.3 61 261-323 10-71 (256)
430 cd00537 MTHFR Methylenetetrahy 23.7 1.1E+02 0.0024 29.8 4.5 62 263-324 29-100 (274)
431 COG0604 Qor NADPH:quinone redu 23.4 1.7E+02 0.0036 29.6 5.7 52 255-313 136-190 (326)
432 PRK08085 gluconate 5-dehydroge 23.3 1.7E+02 0.0038 27.3 5.6 61 262-324 9-70 (254)
433 TIGR02415 23BDH acetoin reduct 23.0 1.8E+02 0.0039 27.0 5.6 55 268-323 5-60 (254)
434 PRK06182 short chain dehydroge 22.9 1.7E+02 0.0037 27.8 5.5 55 262-324 3-58 (273)
435 PRK12829 short chain dehydroge 22.9 2.9E+02 0.0062 25.8 7.0 64 257-324 6-70 (264)
436 KOG4058 Uncharacterized conser 22.9 1.3E+02 0.0028 27.6 4.2 67 256-324 67-134 (199)
437 PRK10669 putative cation:proto 22.9 89 0.0019 33.9 3.9 48 270-324 423-471 (558)
438 PRK08324 short chain dehydroge 22.6 1.9E+02 0.004 32.3 6.4 61 261-324 421-482 (681)
439 TIGR03589 PseB UDP-N-acetylglu 22.4 1.5E+02 0.0032 29.5 5.1 59 262-324 4-65 (324)
440 cd08295 double_bond_reductase_ 22.3 2E+02 0.0044 28.3 6.1 54 255-313 145-200 (338)
441 PRK12384 sorbitol-6-phosphate 22.3 2E+02 0.0043 27.0 5.7 61 263-324 3-65 (259)
442 PRK05855 short chain dehydroge 22.2 1.7E+02 0.0037 30.9 5.8 62 262-325 315-377 (582)
443 COG4301 Uncharacterized conser 21.8 2.6E+02 0.0056 27.9 6.3 69 255-323 72-144 (321)
444 TIGR01557 myb_SHAQKYF myb-like 21.8 3.2E+02 0.007 20.5 5.6 47 11-68 2-54 (57)
445 PRK07832 short chain dehydroge 21.5 2.2E+02 0.0048 27.0 6.0 56 268-323 5-61 (272)
446 cd08230 glucose_DH Glucose deh 21.5 1.7E+02 0.0036 29.2 5.3 48 259-312 170-221 (355)
447 PRK09880 L-idonate 5-dehydroge 21.2 2.4E+02 0.0052 28.0 6.4 52 257-313 165-217 (343)
448 COG0552 FtsY Signal recognitio 21.2 58 0.0013 33.4 1.9 121 264-398 141-286 (340)
449 PRK14124 tRNA pseudouridine sy 21.1 1.5E+02 0.0033 30.0 4.8 40 123-163 228-267 (308)
450 PF01234 NNMT_PNMT_TEMT: NNMT/ 21.1 67 0.0014 31.7 2.2 49 260-310 55-103 (256)
451 PRK06198 short chain dehydroge 21.0 2.4E+02 0.0053 26.3 6.1 62 261-324 5-68 (260)
452 KOG3201 Uncharacterized conser 21.0 61 0.0013 30.2 1.8 48 261-308 29-76 (201)
453 PRK09435 membrane ATPase/prote 20.8 2.8E+02 0.006 28.4 6.7 39 260-298 53-98 (332)
454 TIGR00416 sms DNA repair prote 20.8 1.3E+02 0.0028 32.0 4.5 52 259-312 91-147 (454)
455 cd05278 FDH_like Formaldehyde 20.6 1.8E+02 0.004 28.4 5.3 48 256-304 162-210 (347)
456 TIGR01746 Thioester-redct thio 20.6 2E+02 0.0043 28.1 5.6 56 268-323 4-72 (367)
457 PRK11524 putative methyltransf 20.3 73 0.0016 31.4 2.4 71 312-406 7-78 (284)
458 PRK06180 short chain dehydroge 20.3 2.4E+02 0.0052 26.9 6.0 58 262-324 4-62 (277)
No 1
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=100.00 E-value=2.1e-50 Score=404.00 Aligned_cols=349 Identities=22% Similarity=0.263 Sum_probs=281.7
Q ss_pred cCCCcccccccccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCccccccc
Q 014571 3 LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSV 82 (422)
Q Consensus 3 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 82 (422)
.+++ +|+|.++|++++++|+...|+.++++.+...+ .+-.+.++|.++-+...+..++.+....++. ....+++
T Consensus 7 ~~e~-~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~----~~l~lp~ 80 (460)
T KOG1122|consen 7 DSEE-EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEG----DPLLLPT 80 (460)
T ss_pred cccc-ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhcccccc----ccccCcc
Confidence 5667 99999999999999999999999999999999 9999999999998887777776665332211 0112222
Q ss_pred cc-ccCCCccccccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEE
Q 014571 83 KG-RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA 161 (422)
Q Consensus 83 ~~-~~~~~~~~~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~ 161 (422)
.+ .....+++..++..+..+-++++-|+++- .....+ ++++.|+.++++|++.|+||++.+.+.++.++.+.
T Consensus 81 ~~~~~~~~~~P~L~~v~~~~~~~~~~l~dfk~-----l~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~e 153 (460)
T KOG1122|consen 81 LEEEEEKDSVPDLQNVDLRIVELVPVLGDFKN-----LKEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVE 153 (460)
T ss_pred cccccccccCCccchhhHHhhhhhhhhcchhc-----cccccc--chhhHHHHHHhcccceechHHHHHHHhcccccHHH
Confidence 22 11222344455555566667788888862 112223 99999999999999999999999999999999888
Q ss_pred EeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHh---------cccC----cceeecccc
Q 014571 162 VSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF---------RASE----GIAVDMHNR 228 (422)
Q Consensus 162 v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~---------~~~~----GiaV~~~~~ 228 (422)
+++++++.+. +.++.+|.|+.+.-+.+.. ..+- ++.+.+..+
T Consensus 154 v~~~~e~~~~-------------------------~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s 208 (460)
T KOG1122|consen 154 VYEFLEANEK-------------------------PRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDS 208 (460)
T ss_pred HHHHHHhhcC-------------------------CCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecC
Confidence 8877766544 3567788887665433332 2222 366777788
Q ss_pred ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
++.+|.+.+|++|++.+|+++|++++++|+||||+|||||||||||||+|||++|+++|.|+|+|.+.+|++.++.|+.|
T Consensus 209 ~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r 288 (460)
T KOG1122|consen 209 VVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR 288 (460)
T ss_pred ccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571 309 MGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ 388 (422)
Q Consensus 309 ~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q 388 (422)
+|++|..+..+|+++++.. .+.+.||+||+||||||+|. +.|.+... |..+..++.+++.+|
T Consensus 289 lGv~ntiv~n~D~~ef~~~-------------~~~~~fDRVLLDAPCSGtgv---i~K~~~vk--t~k~~~di~~~~~LQ 350 (460)
T KOG1122|consen 289 LGVTNTIVSNYDGREFPEK-------------EFPGSFDRVLLDAPCSGTGV---ISKDQSVK--TNKTVKDILRYAHLQ 350 (460)
T ss_pred hCCCceEEEccCccccccc-------------ccCcccceeeecCCCCCCcc---cccccccc--cchhHHHHHHhHHHH
Confidence 9999999999999876421 23457999999999999999 88888874 555555568999999
Q ss_pred HHHHHHhcc-ceeccEEEeh
Q 014571 389 EEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 389 ~~IL~~a~~-lr~~~~~~~t 407 (422)
+++|.+|+. ++.||+|||+
T Consensus 351 r~LllsAi~lv~~GGvLVYS 370 (460)
T KOG1122|consen 351 RELLLSAIDLVKAGGVLVYS 370 (460)
T ss_pred HHHHHHHHhhccCCcEEEEE
Confidence 999999977 7999999994
No 2
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=6.3e-43 Score=354.39 Aligned_cols=234 Identities=29% Similarity=0.385 Sum_probs=193.2
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
..+.+-+.+++.+.||.+.++.+++++.+||. .++||||++++++++.+.|... + ..
T Consensus 52 ~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~Rvn~lk~~~~~~~~~l~~~---------~-------------~~ 108 (355)
T COG0144 52 YSHPEWLVEKLPDALGEDEAEAIAAALLRPPP-RSLRVNTLKADVEELLEALEEA---------G-------------VL 108 (355)
T ss_pred ccCcHHHHHHHHHHcChHHHHHHHHHcCCCCC-eeEEEcCccCCHHHHHHHHhhc---------c-------------cc
Confidence 45777889999999998889999999999999 9999999999999999988854 2 00
Q ss_pred cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~ 172 (422)
....+..++++.+
T Consensus 109 ~~~~~~~~~~~~i------------------------------------------------------------------- 121 (355)
T COG0144 109 DEKPWVLDEVLRI------------------------------------------------------------------- 121 (355)
T ss_pred cccCCccccEEEe-------------------------------------------------------------------
Confidence 0000111112111
Q ss_pred CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252 (422)
Q Consensus 173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l 252 (422)
+...++..+|.| ++|+|++||.+||+
T Consensus 122 ---------------------------------------------------~~~~~~~~~~~~---~~G~~~vQd~sS~l 147 (355)
T COG0144 122 ---------------------------------------------------EASGPIGRLPEF---AEGLIYVQDEASQL 147 (355)
T ss_pred ---------------------------------------------------cCCCCcccChhh---hceEEEEcCHHHHH
Confidence 111222344434 69999999999999
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEE-EEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V-~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~ 331 (422)
++++|+|+||++||||||||||||+|||++|.+.|.+ +|+|++++|++.+++|++|+|+.|+.++..|++......
T Consensus 148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~--- 224 (355)
T COG0144 148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL--- 224 (355)
T ss_pred HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc---
Confidence 9999999999999999999999999999999986665 999999999999999999999999999999998764321
Q ss_pred CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
....+||+||+||||||+|+ +||||+.+|+|++... .+++.+|++||++|+. ++.||+|||+
T Consensus 225 ---------~~~~~fD~iLlDaPCSg~G~---irr~Pd~~~~~~~~~i--~~l~~lQ~~iL~~a~~~lk~GG~LVYS 287 (355)
T COG0144 225 ---------PGGEKFDRILLDAPCSGTGV---IRRDPDVKWRRTPEDI--AELAKLQKEILAAALKLLKPGGVLVYS 287 (355)
T ss_pred ---------cccCcCcEEEECCCCCCCcc---cccCccccccCCHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 11236999999999999999 9999999988888765 6999999999999987 7999999993
No 3
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2.8e-42 Score=359.73 Aligned_cols=236 Identities=22% Similarity=0.238 Sum_probs=195.6
Q ss_pred ccCHHHHHHHHHHhch-hhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 14 RWNPQVEEYFIRAYGA-DHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 14 ~~~~~v~~~l~~~~~~-~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.+++.+.+++++.||. +.++++++++.+||. ++|||||+|++.+++++.|.+. | +.
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~-~~lRvN~lK~~~~~~~~~L~~~---------g-------------~~ 59 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLR-RSIRVNTLKISVADFLQLMAPY---------G-------------WT 59 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCC-eEEEEcCCcCCHHHHHHHHHhC---------C-------------Cc
Confidence 3667788999999996 579999999999986 5899999999999999887643 2 22
Q ss_pred cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD 172 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~ 172 (422)
..+.|+.++.+++...++..
T Consensus 60 ~~~~p~~~~g~~~~~~~~~~------------------------------------------------------------ 79 (470)
T PRK11933 60 LTPIPWCEEGFWIERDDEDA------------------------------------------------------------ 79 (470)
T ss_pred eeECCCCCceEEEecCcccc------------------------------------------------------------
Confidence 33455555554432210000
Q ss_pred CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV 252 (422)
Q Consensus 173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l 252 (422)
.++..+|.| .+|+||+||++||+
T Consensus 80 ------------------------------------------------------~~~~~~~~~---~~G~~yvQd~sS~l 102 (470)
T PRK11933 80 ------------------------------------------------------LPLGNTAEH---LSGLFYIQEASSML 102 (470)
T ss_pred ------------------------------------------------------CCcccChHH---HCCcEEEECHHHHH
Confidence 001123333 58999999999999
Q ss_pred HHHhc--CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 253 TAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 253 v~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
++.+| +|+||++||||||||||||+|||++|+++|.|+|+|++++|++.+++|++|+|+.||.++..|++.+...
T Consensus 103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~--- 179 (470)
T PRK11933 103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA--- 179 (470)
T ss_pred HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh---
Confidence 99999 9999999999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA 408 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~ 408 (422)
....||+||+||||||+|+ +||+|+++++|+++.. .+|+.+|++||++|+. |+.+|.|||++
T Consensus 180 -----------~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v--~~l~~lQ~~iL~~A~~~LkpGG~LVYST 242 (470)
T PRK11933 180 -----------LPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESN--LEIAATQRELIESAFHALKPGGTLVYST 242 (470)
T ss_pred -----------chhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHH--HHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence 2356999999999999999 9999999999999876 6999999999999976 89999999943
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=8e-39 Score=315.32 Aligned_cols=195 Identities=28% Similarity=0.324 Sum_probs=164.2
Q ss_pred CcccCCCceEEEEccCccCHHHHhc--ccCcceeeccc--------------cccCCCCccccccceEEEeChhHHHHHH
Q 014571 192 PYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHN--------------RIFQLPSFYDVLEGEIFLQNLPSIVTAH 255 (422)
Q Consensus 192 ~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~~--------------~~~~~p~~~~~~~G~~~~Qd~~S~lv~~ 255 (422)
.++|+++++++|+|+.+++++++.+ ...|+.++... ++..+| .|++|++++||++||+++.
T Consensus 3 ~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~G~~~vQd~sS~l~~~ 79 (283)
T PF01189_consen 3 EANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLP---EFKNGLFYVQDESSQLVAL 79 (283)
T ss_dssp HHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSH---HHHTTSEEEHHHHHHHHHH
T ss_pred cccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhch---hhhCCcEEecccccccccc
Confidence 4567889999999999999999886 45566655332 222333 3579999999999999999
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
+|+|++|++||||||||||||+|+|++|.++|+|+|+|++.+|+..++++++|+|+.++.++..|+++......
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------ 153 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------ 153 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999998743211
Q ss_pred cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-c----eeccEEEeh
Q 014571 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-L----RIQKVLVLT 407 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-l----r~~~~~~~t 407 (422)
...||+||+||||||+|+ ++|+|+..+.|++... .+++.+|++||++|+. + +.+|.+||+
T Consensus 154 -------~~~fd~VlvDaPCSg~G~---i~r~p~~~~~~~~~~~--~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs 218 (283)
T PF01189_consen 154 -------ESKFDRVLVDAPCSGLGT---IRRNPDIKWRRSPEDI--EKLAELQREILDNAAKLLNIDFKPGGRLVYS 218 (283)
T ss_dssp -------TTTEEEEEEECSCCCGGG---TTTCTTHHHHE-TTHH--HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred -------ccccchhhcCCCccchhh---hhhccchhhccccccc--chHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence 235999999999999999 9999999877776554 6999999999999976 7 899999993
No 5
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.9e-36 Score=314.35 Aligned_cols=220 Identities=21% Similarity=0.225 Sum_probs=187.3
Q ss_pred ccccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeeccc-------------
Q 014571 165 AVEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHN------------- 227 (422)
Q Consensus 165 ~l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~~------------- 227 (422)
.+.-.|++|.|+++.++..+... .++.+++++++++++|+|..+.+++++.+ ...|+.++...
T Consensus 127 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~ 206 (431)
T PRK14903 127 ELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGV 206 (431)
T ss_pred hhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCC
Confidence 45567899999999998887533 35677889999999999999999988765 34565544321
Q ss_pred cccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH
Q 014571 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307 (422)
Q Consensus 228 ~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~ 307 (422)
++..++ .|++|.+++||.+||+++.++++++|++|||+||||||||+|+++++++.|+|+|+|++++|++.+++|++
T Consensus 207 ~~~~~~---~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~ 283 (431)
T PRK14903 207 NMNDSR---VIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK 283 (431)
T ss_pred CcccCh---HHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence 122233 35899999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred HhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHH
Q 014571 308 EMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMA 387 (422)
Q Consensus 308 r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~ 387 (422)
++|+++++++++|++.+... ..+.||+||+||||||.|+ ++++|+.+++|++... ..++.+
T Consensus 284 r~g~~~v~~~~~Da~~l~~~--------------~~~~fD~Vl~DaPCsg~G~---~~~~p~~~~~~~~~~~--~~l~~~ 344 (431)
T PRK14903 284 RLKLSSIEIKIADAERLTEY--------------VQDTFDRILVDAPCTSLGT---ARNHPEVLRRVNKEDF--KKLSEI 344 (431)
T ss_pred HcCCCeEEEEECchhhhhhh--------------hhccCCEEEECCCCCCCcc---ccCChHHHHhCCHHHH--HHHHHH
Confidence 99999999999999865310 1346999999999999999 9999999988887655 689999
Q ss_pred HHHHHHHhcc-ceeccEEEe
Q 014571 388 QEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 388 Q~~IL~~a~~-lr~~~~~~~ 406 (422)
|++||.+++. ++.||.||+
T Consensus 345 Q~~iL~~a~~~LkpGG~LvY 364 (431)
T PRK14903 345 QLRIVSQAWKLLEKGGILLY 364 (431)
T ss_pred HHHHHHHHHHhcCCCCEEEE
Confidence 9999999977 799999999
No 6
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5.5e-36 Score=311.29 Aligned_cols=222 Identities=27% Similarity=0.282 Sum_probs=186.9
Q ss_pred cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcc------------eeecc-cc
Q 014571 166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGI------------AVDMH-NR 228 (422)
Q Consensus 166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~Gi------------aV~~~-~~ 228 (422)
+.-.||+|.|+++.++..+... ..+..++|+++++++|+|+.+.+++++.+ ...|+ .+... ..
T Consensus 143 l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 222 (434)
T PRK14901 143 LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGS 222 (434)
T ss_pred HHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCc
Confidence 4456899999999999887633 35778889999999999999999988664 23343 33321 12
Q ss_pred ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
+..+|.| ++|++++||.+||+++.+|++++|++|||+|||||+||+++++++++.|+|+|+|+++.|++.+++|+++
T Consensus 223 ~~~~~~f---~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r 299 (434)
T PRK14901 223 IRQLPGY---EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR 299 (434)
T ss_pred cccChHH---hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence 4445544 7999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred hCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571 309 MGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ 388 (422)
Q Consensus 309 ~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q 388 (422)
+|+++|+++++|++...... . ...+.||.|++||||||+|+ ++++|+..|+|++... .+++.+|
T Consensus 300 ~g~~~v~~~~~D~~~~~~~~---~--------~~~~~fD~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~--~~l~~~Q 363 (434)
T PRK14901 300 LGLKSIKILAADSRNLLELK---P--------QWRGYFDRILLDAPCSGLGT---LHRHPDARWRQTPEKI--QELAPLQ 363 (434)
T ss_pred cCCCeEEEEeCChhhccccc---c--------cccccCCEEEEeCCCCcccc---cccCcchhhhCCHHHH--HHHHHHH
Confidence 99999999999998653210 0 01356999999999999999 9999999888777655 6899999
Q ss_pred HHHHHHhcc-ceeccEEEe
Q 014571 389 EEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 389 ~~IL~~a~~-lr~~~~~~~ 406 (422)
++||++++. ++.+|.+|+
T Consensus 364 ~~iL~~a~~~lkpgG~lvy 382 (434)
T PRK14901 364 AELLESLAPLLKPGGTLVY 382 (434)
T ss_pred HHHHHHHHHhcCCCCEEEE
Confidence 999999977 799999998
No 7
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=2.4e-34 Score=298.33 Aligned_cols=218 Identities=23% Similarity=0.239 Sum_probs=177.9
Q ss_pred cccccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc------------cccc
Q 014571 166 VEQPTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------NRIF 230 (422)
Q Consensus 166 l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~------------~~~~ 230 (422)
+.-.||+|.|+++.+...+... .++..++|+++++++|+|..+.+++++.+ ...|+.+... ..+.
T Consensus 131 l~~~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~ 210 (426)
T TIGR00563 131 LDARYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVH 210 (426)
T ss_pred HHHHcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcc
Confidence 4557999999998877776322 35667888999999999999999988765 3445443321 1233
Q ss_pred CCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 231 ~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
.+|. |++|++++||.+||+++..|+|++|++|||+|||||+||++++++++ .|+|+|+|++++|++.+++|++++|
T Consensus 211 ~~~~---~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g 286 (426)
T TIGR00563 211 ALPG---FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG 286 (426)
T ss_pred cCch---hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence 3333 47999999999999999999999999999999999999999999986 7899999999999999999999999
Q ss_pred CcceEE--EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571 311 LKCITT--YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ 388 (422)
Q Consensus 311 ~~nv~~--~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q 388 (422)
++ +.+ ..+|+...... ...+.||.|++||||||+|+ +|++|+..|+|+++.. .+++.+|
T Consensus 287 ~~-~~v~~~~~d~~~~~~~-------------~~~~~fD~VllDaPcSg~G~---~~~~p~~~~~~~~~~~--~~l~~lQ 347 (426)
T TIGR00563 287 LT-IKAETKDGDGRGPSQW-------------AENEQFDRILLDAPCSATGV---IRRHPDIKWLRKPRDI--AELAELQ 347 (426)
T ss_pred CC-eEEEEecccccccccc-------------ccccccCEEEEcCCCCCCcc---cccCcchhhcCCHHHH--HHHHHHH
Confidence 87 444 55565432110 01356999999999999999 9999999887776654 6999999
Q ss_pred HHHHHHhcc-ceeccEEEe
Q 014571 389 EEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 389 ~~IL~~a~~-lr~~~~~~~ 406 (422)
++||++++. +|.+|.+|+
T Consensus 348 ~~lL~~a~~~LkpgG~lvy 366 (426)
T TIGR00563 348 SEILDAIWPLLKTGGTLVY 366 (426)
T ss_pred HHHHHHHHHhcCCCcEEEE
Confidence 999999987 899999999
No 8
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=3.3e-33 Score=272.73 Aligned_cols=183 Identities=26% Similarity=0.314 Sum_probs=156.2
Q ss_pred EEEccCccCHHHHhc--ccCcceeeccc------------cccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEE
Q 014571 202 IGQGTAMMSRAGIFR--ASEGIAVDMHN------------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD 267 (422)
Q Consensus 202 Vrvg~a~msreel~~--~~~GiaV~~~~------------~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD 267 (422)
||+|+.+.+++++.+ ...|+.++... .+..+|. |++|++++||.+||+++.+|++++|++|||
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~qd~~s~~~~~~l~~~~g~~VLD 77 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPE---YLSGLYYIQEASSMIPPLALEPDPPERVLD 77 (264)
T ss_pred CeecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChh---HhCCeEEEECHHHHHHHHHhCCCCcCEEEE
Confidence 578888889988765 34454333211 1333343 479999999999999999999999999999
Q ss_pred ecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCC
Q 014571 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYIT 347 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD 347 (422)
+|||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.+|+++..|++.+... ...||
T Consensus 78 l~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---------------~~~fD 142 (264)
T TIGR00446 78 MAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---------------VPKFD 142 (264)
T ss_pred ECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---------------ccCCC
Confidence 999999999999999988899999999999999999999999999999999998764311 23499
Q ss_pred ceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 348 SQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 348 ~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
+||+||||||.|+ ++++|+.++.|+++.. .+++.+|++||++++. +|.+|.||++
T Consensus 143 ~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~--~~l~~~q~~iL~~a~~~lkpgG~lvYs 198 (264)
T TIGR00446 143 AILLDAPCSGEGV---IRKDPSRKKNWSEEDI--QEISALQKELIDSAFDALKPGGVLVYS 198 (264)
T ss_pred EEEEcCCCCCCcc---cccChhhhhcCCHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 9999999999999 9999999988888755 6899999999999977 8999999994
No 9
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5.9e-33 Score=289.45 Aligned_cols=218 Identities=21% Similarity=0.194 Sum_probs=184.0
Q ss_pred cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc--------ccccCCC
Q 014571 166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH--------NRIFQLP 233 (422)
Q Consensus 166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~--------~~~~~~p 233 (422)
+...+++|.|+++.++..+... .++.+++++++++++|+|..+.+++++.+ ...|+.+... .......
T Consensus 145 l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (445)
T PRK14904 145 LSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNFFLSKDFSLFE 224 (445)
T ss_pred HHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceEEEeccccccC
Confidence 4556899999999999888643 35677888999999999999999988765 3345443322 1122220
Q ss_pred CccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 234 ~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
..+.+|.+++||.+|++++.+|++++|++|||+|||||+||+++++.+++.++|+|+|+++.|++.++++++++|+.+
T Consensus 225 --~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~ 302 (445)
T PRK14904 225 --PFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI 302 (445)
T ss_pred --hHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe
Confidence 235799999999999999999999999999999999999999999998878899999999999999999999999999
Q ss_pred eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571 314 ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA 393 (422)
Q Consensus 314 v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~ 393 (422)
|+++++|+..+.. .+.||.|++||||||+|+ ++|+|+..|.|+++.. ..++.+|++||+
T Consensus 303 v~~~~~Da~~~~~----------------~~~fD~Vl~D~Pcsg~g~---~~r~p~~~~~~~~~~~--~~l~~~q~~iL~ 361 (445)
T PRK14904 303 IETIEGDARSFSP----------------EEQPDAILLDAPCTGTGV---LGRRAELRWKLTPEKL--AELVGLQAELLD 361 (445)
T ss_pred EEEEeCccccccc----------------CCCCCEEEEcCCCCCcch---hhcCcchhhcCCHHHH--HHHHHHHHHHHH
Confidence 9999999876421 246999999999999999 9999999888877554 689999999999
Q ss_pred Hhcc-ceeccEEEe
Q 014571 394 LVVG-LRIQKVLVL 406 (422)
Q Consensus 394 ~a~~-lr~~~~~~~ 406 (422)
+++. ++.+|.+|+
T Consensus 362 ~a~~~lkpgG~lvy 375 (445)
T PRK14904 362 HAASLLKPGGVLVY 375 (445)
T ss_pred HHHHhcCCCcEEEE
Confidence 9977 799999999
No 10
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=5e-32 Score=281.12 Aligned_cols=221 Identities=23% Similarity=0.247 Sum_probs=180.5
Q ss_pred ccccccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc------------ccc
Q 014571 165 AVEQPTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------NRI 229 (422)
Q Consensus 165 ~l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~------------~~~ 229 (422)
++...+++|.|+++.++..+... .++.+++|+++++++|+|..+.+++++.+ ...|+.++.. .++
T Consensus 136 ~~~~~~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (427)
T PRK10901 136 DPVARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPV 215 (427)
T ss_pred chHhHhcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCc
Confidence 45667999999999998887422 34678889999999999999999987654 2344433321 123
Q ss_pred cCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (422)
Q Consensus 230 ~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~ 309 (422)
..+|. |++|++++||.+||+++.+|++++|++|||+|||||+||+++++.+++ ++|+|+|+++.+++.+++|++++
T Consensus 216 ~~~~~---~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~ 291 (427)
T PRK10901 216 HQLPG---FAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRL 291 (427)
T ss_pred ccCch---hhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence 33333 479999999999999999999999999999999999999999998754 89999999999999999999999
Q ss_pred CCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHH
Q 014571 310 GLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQE 389 (422)
Q Consensus 310 g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~ 389 (422)
|+. ++++++|++...... ..+.||.|++||||||.|+ ++++|+..|.+++. ++.++..+|+
T Consensus 292 g~~-~~~~~~D~~~~~~~~-------------~~~~fD~Vl~D~Pcs~~G~---~~~~p~~~~~~~~~--~l~~l~~~q~ 352 (427)
T PRK10901 292 GLK-ATVIVGDARDPAQWW-------------DGQPFDRILLDAPCSATGV---IRRHPDIKWLRRPE--DIAALAALQS 352 (427)
T ss_pred CCC-eEEEEcCcccchhhc-------------ccCCCCEEEECCCCCcccc---cccCccccccCCHH--HHHHHHHHHH
Confidence 986 688999987642110 1346999999999999999 99999987555554 3468899999
Q ss_pred HHHHHhcc-ceeccEEEehh
Q 014571 390 EINALVVG-LRIQKVLVLTA 408 (422)
Q Consensus 390 ~IL~~a~~-lr~~~~~~~t~ 408 (422)
+||+++.. |+.||.+++++
T Consensus 353 ~iL~~a~~~LkpGG~lvyst 372 (427)
T PRK10901 353 EILDALWPLLKPGGTLLYAT 372 (427)
T ss_pred HHHHHHHHhcCCCCEEEEEe
Confidence 99999976 89999999843
No 11
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.97 E-value=8.6e-32 Score=280.61 Aligned_cols=221 Identities=27% Similarity=0.269 Sum_probs=184.2
Q ss_pred cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc-----------cccc
Q 014571 166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH-----------NRIF 230 (422)
Q Consensus 166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~-----------~~~~ 230 (422)
+.-.+++|.|+++.++..+... .++.+++++++++++|+|..+.+++++.+ ...|+.++.. ..+.
T Consensus 143 ~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~ 222 (444)
T PRK14902 143 LSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKGNIA 222 (444)
T ss_pred HHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeCCCcc
Confidence 4446899999999999887533 35677889999999999999998887654 2344443322 2233
Q ss_pred CCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 231 ~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
.+|.| ++|.+++||.+|++++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.+++.+++|++++|
T Consensus 223 ~~~~~---~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g 299 (444)
T PRK14902 223 GTDLF---KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG 299 (444)
T ss_pred cChHH---hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence 44444 799999999999999999999999999999999999999999998778999999999999999999999999
Q ss_pred CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHH
Q 014571 311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEE 390 (422)
Q Consensus 311 ~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~ 390 (422)
+.+|+++++|++..... ..+.||.|++||||||.|+ ++++|+..+.|++... ..++.+|++
T Consensus 300 ~~~v~~~~~D~~~~~~~--------------~~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~--~~l~~~q~~ 360 (444)
T PRK14902 300 LTNIETKALDARKVHEK--------------FAEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDI--ESLQEIQLE 360 (444)
T ss_pred CCeEEEEeCCcccccch--------------hcccCCEEEEcCCCCCCee---eccCcchhhcCCHHHH--HHHHHHHHH
Confidence 98899999998764311 1256999999999999999 9999999877766544 689999999
Q ss_pred HHHHhcc-ceeccEEEehh
Q 014571 391 INALVVG-LRIQKVLVLTA 408 (422)
Q Consensus 391 IL~~a~~-lr~~~~~~~t~ 408 (422)
||+++.. ++.+|.+|+++
T Consensus 361 iL~~a~~~LkpGG~lvyst 379 (444)
T PRK14902 361 ILESVAQYLKKGGILVYST 379 (444)
T ss_pred HHHHHHHHcCCCCEEEEEc
Confidence 9999977 89999999843
No 12
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.95 E-value=7e-29 Score=247.10 Aligned_cols=169 Identities=23% Similarity=0.211 Sum_probs=141.0
Q ss_pred cccCCCCcc--ccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHH
Q 014571 228 RIFQLPSFY--DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDI 302 (422)
Q Consensus 228 ~~~~~p~~~--~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l 302 (422)
++.++|.|. +..-|.+|.||.+||+++.+|+++||++||||||||||||.++.+.+.. .|.|+|+|.+.+|+..+
T Consensus 120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L 199 (375)
T KOG2198|consen 120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML 199 (375)
T ss_pred chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence 344555542 3467899999999999999999999999999999999999999887743 47999999999999999
Q ss_pred HHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCcc-ccccCccc
Q 014571 303 QKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKS-CKEKGRTC 381 (422)
Q Consensus 303 ~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~-w~~~~~~~ 381 (422)
.+.++++.-.++.+..+|+..++...-. . ........||+||||+||||+|+ +|++++++.. |.....
T Consensus 200 ~~q~~~l~~~~~~v~~~~~~~~p~~~~~--~----~~~~~~~~fDrVLvDVPCS~Dgt---~rk~~~i~~~~w~~~~~-- 268 (375)
T KOG2198|consen 200 VHQLKRLPSPNLLVTNHDASLFPNIYLK--D----GNDKEQLKFDRVLVDVPCSGDGT---LRKNPNIWKEGWKTQRA-- 268 (375)
T ss_pred HHHHhccCCcceeeecccceeccccccc--c----CchhhhhhcceeEEecccCCCcc---cccCchHhhhhhhhhhc--
Confidence 9999888888899999998876543210 0 00113567999999999999999 9999999988 887663
Q ss_pred chhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 382 GECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 382 ~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
..++.+|.+||++... |+.||.+||+
T Consensus 269 ~~L~~LQ~~iL~rgl~lLk~GG~lVYS 295 (375)
T KOG2198|consen 269 LGLHALQLRILRRGLRLLKVGGRLVYS 295 (375)
T ss_pred cCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence 3799999999999966 8999999994
No 13
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.81 E-value=4.7e-20 Score=184.26 Aligned_cols=195 Identities=23% Similarity=0.290 Sum_probs=141.1
Q ss_pred CCCceEEEEccCccCHHHHhc-------------ccCcceeeccc-cccCCC-C-----ccccccceEEEeChhHHHHHH
Q 014571 196 ERSGLYIGQGTAMMSRAGIFR-------------ASEGIAVDMHN-RIFQLP-S-----FYDVLEGEIFLQNLPSIVTAH 255 (422)
Q Consensus 196 ~~~~v~Vrvg~a~msreel~~-------------~~~GiaV~~~~-~~~~~p-~-----~~~~~~G~~~~Qd~~S~lv~~ 255 (422)
...+.|+|+|+.+-+.++.+. .+.-+.+.... .+...| + ...++.|.+.+||.+|+++++
T Consensus 128 ~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~ 207 (413)
T KOG2360|consen 128 IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAH 207 (413)
T ss_pred CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhh
Confidence 457889999999876666553 01112222111 111111 1 123589999999999999999
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
.|+|.+|..|+|+||+||.||+|+|..|.++|+|+|+|.++.|.+.+++.++..|..+++...+|+...+. +.
T Consensus 208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~-~~------ 280 (413)
T KOG2360|consen 208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTAT-PE------ 280 (413)
T ss_pred hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCC-cc------
Confidence 99999999999999999999999999999999999999999999999999999999999998999876411 10
Q ss_pred cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe
Q 014571 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL 406 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~ 406 (422)
. ......||+|++|||+|+ ..|.-.....=.+....+..+..-|-.|+++|..+.--+-+++
T Consensus 281 -----~-~~~v~~iL~DpscSgSgm---~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvy 342 (413)
T KOG2360|consen 281 -----K-FRDVTYILVDPSCSGSGM---VSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVY 342 (413)
T ss_pred -----c-ccceeEEEeCCCCCCCcc---ccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCchhheee
Confidence 1 123478999999999999 3332222211122223345677788899999988533344555
No 14
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.31 E-value=2e-12 Score=129.47 Aligned_cols=137 Identities=16% Similarity=0.185 Sum_probs=99.5
Q ss_pred HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE 334 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~ 334 (422)
.+++..++.+|||+|||+|..+..+|+. ..+|+|+|.++..++.+++|++..|++|++++++|+..+....
T Consensus 167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~------ 237 (315)
T PRK03522 167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ------ 237 (315)
T ss_pred HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc------
Confidence 3444456799999999999999999985 3689999999999999999999999989999999998764210
Q ss_pred ccccCCCCCCCCCceeecCCccccCch--hhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe----
Q 014571 335 PNMCNSKDNNYITSQTSDSMKLHKEVP--SIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL---- 406 (422)
Q Consensus 335 ~~~~~~~~~~~FD~VLvDaPCSg~G~l--~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~---- 406 (422)
.+.||.|++|||++|.+.. ..+.+ ..+....+.+|.+ ++|++ +.-.++++..+-.+
T Consensus 238 --------~~~~D~Vv~dPPr~G~~~~~~~~l~~-------~~~~~ivyvsc~p~t~~rd~-~~l~~y~~~~~~~~DmFP 301 (315)
T PRK03522 238 --------GEVPDLVLVNPPRRGIGKELCDYLSQ-------MAPRFILYSSCNAQTMAKDL-AHLPGYRIERVQLFDMFP 301 (315)
T ss_pred --------CCCCeEEEECCCCCCccHHHHHHHHH-------cCCCeEEEEECCcccchhHH-hhccCcEEEEEEEeccCC
Confidence 2358999999999986431 22222 1222222333332 33332 22358999888888
Q ss_pred -hhhHHHHHhh
Q 014571 407 -TALIESFLML 416 (422)
Q Consensus 407 -t~~~~~~~~~ 416 (422)
|.|+|++..|
T Consensus 302 ~T~HvE~v~~l 312 (315)
T PRK03522 302 HTAHYEVLTLL 312 (315)
T ss_pred CCCeEEEEEEE
Confidence 9999997543
No 15
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.28 E-value=1.4e-11 Score=128.21 Aligned_cols=140 Identities=21% Similarity=0.185 Sum_probs=106.2
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~ 331 (422)
.+..+++..++++|||+.||-|+.|+++|.. ..+|+|+|+++..++.+++|++..|+.|+.+..+|+.++.....
T Consensus 284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~-- 358 (432)
T COG2265 284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW-- 358 (432)
T ss_pred HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--
Confidence 3556677889999999999999999999965 47999999999999999999999999999999999998764321
Q ss_pred CCCccccCCCCCCCCCceeecCCccccC-chhhhhhCCCCCccccccCcccchhHH--HHHHHHHHh-ccceeccEEEe-
Q 014571 332 NDEPNMCNSKDNNYITSQTSDSMKLHKE-VPSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALV-VGLRIQKVLVL- 406 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G-~l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a-~~lr~~~~~~~- 406 (422)
....||.|++|||++|.+ . +-+.- .+..+....+-+|.+ +.|++-.-+ .++++.++-..
T Consensus 359 ----------~~~~~d~VvvDPPR~G~~~~---~lk~l---~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~D 422 (432)
T COG2265 359 ----------EGYKPDVVVVDPPRAGADRE---VLKQL---AKLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFD 422 (432)
T ss_pred ----------ccCCCCEEEECCCCCCCCHH---HHHHH---HhcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEec
Confidence 134689999999999988 3 22211 123444444556654 444444334 45667777776
Q ss_pred ----hhhHHH
Q 014571 407 ----TALIES 412 (422)
Q Consensus 407 ----t~~~~~ 412 (422)
|+|+|+
T Consensus 423 mFP~T~HvE~ 432 (432)
T COG2265 423 MFPHTHHVEA 432 (432)
T ss_pred cCCCccccCC
Confidence 999996
No 16
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.27 E-value=8.4e-12 Score=130.62 Aligned_cols=142 Identities=23% Similarity=0.253 Sum_probs=102.9
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
...+++.+|++|||+|||+|..|..+|... .+|+|+|+|+.+++.+++|++..|++|++++++|+....... +.
T Consensus 290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~---~~ 363 (443)
T PRK13168 290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ---PW 363 (443)
T ss_pred HHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh---hh
Confidence 345567899999999999999999999873 689999999999999999999999999999999997643110 00
Q ss_pred CccccCCCCCCCCCceeecCCccccCch-hhhhhCCCCCccccccCcccchhHH--HHHHHHHH-hccceeccEEEe---
Q 014571 334 EPNMCNSKDNNYITSQTSDSMKLHKEVP-SIAAEGLNGDKSCKEKGRTCGECGM--AQEEINAL-VVGLRIQKVLVL--- 406 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l-~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~-a~~lr~~~~~~~--- 406 (422)
....||.|++|||++|.... ..+.+ ..++..-+.+|.+ +-|++-.- ..|+|+..+-.+
T Consensus 364 --------~~~~fD~Vi~dPPr~g~~~~~~~l~~-------~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~DmF 428 (443)
T PRK13168 364 --------ALGGFDKVLLDPPRAGAAEVMQALAK-------LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGMLDMF 428 (443)
T ss_pred --------hcCCCCEEEECcCCcChHHHHHHHHh-------cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEEeccC
Confidence 12459999999999986542 22222 1233333333332 33333333 257999888888
Q ss_pred --hhhHHHHHhh
Q 014571 407 --TALIESFLML 416 (422)
Q Consensus 407 --t~~~~~~~~~ 416 (422)
|.|+|++-.|
T Consensus 429 P~T~HvE~v~lL 440 (443)
T PRK13168 429 PHTGHVESMALF 440 (443)
T ss_pred CCCCcEEEEEEE
Confidence 9999987543
No 17
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.23 E-value=1.2e-11 Score=125.98 Aligned_cols=150 Identities=17% Similarity=0.183 Sum_probs=91.5
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+..++++.++ .|||++||.|+.|+.+|... .+|+|+|.++..++.+++|++..|++|++++.+++.++........
T Consensus 189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r 264 (352)
T PF05958_consen 189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR 264 (352)
T ss_dssp HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence 4566777766 89999999999999999874 6899999999999999999999999999999988876533221100
Q ss_pred CCcc-ccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-
Q 014571 333 DEPN-MCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL- 406 (422)
Q Consensus 333 ~~~~-~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~- 406 (422)
.... ..-......||.|++|||++|.+. ++.+. .+ +..-+.+|.+ +-|++-.-..++++..+-.+
T Consensus 265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~-~~--------~~ivYvSCnP~tlaRDl~~L~~~y~~~~v~~~D 335 (352)
T PF05958_consen 265 EFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK-KL--------KRIVYVSCNPATLARDLKILKEGYKLEKVQPVD 335 (352)
T ss_dssp GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH-HS--------SEEEEEES-HHHHHHHHHHHHCCEEEEEEEEE-
T ss_pred HHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh-cC--------CeEEEEECCHHHHHHHHHHHhhcCEEEEEEEee
Confidence 0000 000001235899999999999875 23232 22 2333455554 33333222348999998888
Q ss_pred ----hhhHHHHHh
Q 014571 407 ----TALIESFLM 415 (422)
Q Consensus 407 ----t~~~~~~~~ 415 (422)
|.|+|++..
T Consensus 336 mFP~T~HvE~v~l 348 (352)
T PF05958_consen 336 MFPQTHHVETVAL 348 (352)
T ss_dssp SSTTSS--EEEEE
T ss_pred cCCCCCcEEEEEE
Confidence 999998654
No 18
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.19 E-value=1.9e-10 Score=106.38 Aligned_cols=74 Identities=30% Similarity=0.444 Sum_probs=68.9
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.++...|.|+||++++|++||+|+-|..+| ++++.++|+|+|.++++++.+++|++++|++|++++.+|+-+..
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L 97 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL 97 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence 456678899999999999999999999999 77889999999999999999999999999999999999987654
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.15 E-value=1.4e-10 Score=111.67 Aligned_cols=85 Identities=26% Similarity=0.268 Sum_probs=62.5
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~ 331 (422)
.++..+.+++|++|||+|||+|.-|..++..+++.++|+++|+|+.|++.+++++++.+..+|+++++|+..++..
T Consensus 38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~---- 113 (233)
T PF01209_consen 38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP---- 113 (233)
T ss_dssp HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-----
T ss_pred HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC----
Confidence 4566678999999999999999999999999888899999999999999999999999988999999999987642
Q ss_pred CCCccccCCCCCCCCCceee
Q 014571 332 NDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLv 351 (422)
.+.||.|.+
T Consensus 114 -----------d~sfD~v~~ 122 (233)
T PF01209_consen 114 -----------DNSFDAVTC 122 (233)
T ss_dssp -----------TT-EEEEEE
T ss_pred -----------CCceeEEEH
Confidence 356898887
No 20
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.15 E-value=7e-11 Score=121.21 Aligned_cols=135 Identities=16% Similarity=0.175 Sum_probs=99.5
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
++..++.+|||++||.|..++.+|.. ..+|+|+|+++..++.+++|++..|++|++++++|+.++....
T Consensus 229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-------- 297 (374)
T TIGR02085 229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-------- 297 (374)
T ss_pred HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--------
Confidence 44456789999999999999999964 3689999999999999999999999999999999998754210
Q ss_pred ccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-----h
Q 014571 337 MCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL-----T 407 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~-----t 407 (422)
...||.|++|||..|..- ++.+.+ ..++..-+.+|.+ +.|++-.- .|+++..+-.+ |
T Consensus 298 ------~~~~D~vi~DPPr~G~~~~~l~~l~~-------~~p~~ivyvsc~p~TlaRDl~~L-~gy~l~~~~~~DmFPqT 363 (374)
T TIGR02085 298 ------MSAPELVLVNPPRRGIGKELCDYLSQ-------MAPKFILYSSCNAQTMAKDIAEL-SGYQIERVQLFDMFPHT 363 (374)
T ss_pred ------CCCCCEEEECCCCCCCcHHHHHHHHh-------cCCCeEEEEEeCHHHHHHHHHHh-cCceEEEEEEeccCCCC
Confidence 124899999999987532 122222 2344444445443 33333332 68999888887 9
Q ss_pred hhHHHHHhh
Q 014571 408 ALIESFLML 416 (422)
Q Consensus 408 ~~~~~~~~~ 416 (422)
.|+|++-.|
T Consensus 364 ~HvE~v~ll 372 (374)
T TIGR02085 364 SHYEVLTLL 372 (374)
T ss_pred CcEEEEEEE
Confidence 999997543
No 21
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.12 E-value=2.1e-10 Score=117.26 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=97.0
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
+.+|||+|||.|+.|+.++... .+|+|+|.++..++.+++|++..|++|++++.+|+.++..........-......
T Consensus 207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~ 283 (362)
T PRK05031 207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID 283 (362)
T ss_pred CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence 3579999999999999888763 4899999999999999999999999999999999987653211000000000000
Q ss_pred -CCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-----hhhHH
Q 014571 342 -DNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL-----TALIE 411 (422)
Q Consensus 342 -~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~-----t~~~~ 411 (422)
....||.|++|||.+|... ++.+.+ |+ ..-+.+|.+ +.|++-.-..++++.++-.+ |.|||
T Consensus 284 ~~~~~~D~v~lDPPR~G~~~~~l~~l~~-~~--------~ivyvSC~p~tlarDl~~L~~gY~l~~v~~~DmFPqT~HvE 354 (362)
T PRK05031 284 LKSYNFSTIFVDPPRAGLDDETLKLVQA-YE--------RILYISCNPETLCENLETLSQTHKVERFALFDQFPYTHHME 354 (362)
T ss_pred ccCCCCCEEEECCCCCCCcHHHHHHHHc-cC--------CEEEEEeCHHHHHHHHHHHcCCcEEEEEEEcccCCCCCcEE
Confidence 0125899999999988532 344544 32 222334433 23322222238999988888 99999
Q ss_pred HHHhh
Q 014571 412 SFLML 416 (422)
Q Consensus 412 ~~~~~ 416 (422)
++..|
T Consensus 355 ~v~lL 359 (362)
T PRK05031 355 CGVLL 359 (362)
T ss_pred EEEEE
Confidence 87543
No 22
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.11 E-value=2.3e-10 Score=119.26 Aligned_cols=137 Identities=18% Similarity=0.089 Sum_probs=96.8
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
...++++++++|||+|||+|..++.+|... .+|+|+|+++.+++.+++|++..|+.|++++.+|+........ .
T Consensus 285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~---~ 358 (431)
T TIGR00479 285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP---W 358 (431)
T ss_pred HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH---h
Confidence 445567888999999999999999999863 5899999999999999999999999999999999976432110 0
Q ss_pred CccccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH-HHHHHHHHh--ccceeccEEEe--
Q 014571 334 EPNMCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM-AQEEINALV--VGLRIQKVLVL-- 406 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~-~Q~~IL~~a--~~lr~~~~~~~-- 406 (422)
....||.|++|||++|... ++.+.+ ..++...+.+|.+ ++.+-++.. .|+++..+..+
T Consensus 359 --------~~~~~D~vi~dPPr~G~~~~~l~~l~~-------l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~~~Dm 423 (431)
T TIGR00479 359 --------AGQIPDVLLLDPPRKGCAAEVLRTIIE-------LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQPVDM 423 (431)
T ss_pred --------cCCCCCEEEECcCCCCCCHHHHHHHHh-------cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEEEecc
Confidence 1245899999999998432 222332 1222222223332 332222222 46888888777
Q ss_pred ---hhhHH
Q 014571 407 ---TALIE 411 (422)
Q Consensus 407 ---t~~~~ 411 (422)
|.|+|
T Consensus 424 FP~T~HvE 431 (431)
T TIGR00479 424 FPHTAHVE 431 (431)
T ss_pred CCCCCCCC
Confidence 99987
No 23
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.10 E-value=8.2e-10 Score=111.30 Aligned_cols=118 Identities=16% Similarity=0.122 Sum_probs=93.0
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
.+.++++++|++|||.|||+|+.+..++.. ...|+++|+++.+++.+++|++.+|+.++.+.++|+++.+..
T Consensus 174 ~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~----- 245 (329)
T TIGR01177 174 MVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS----- 245 (329)
T ss_pred HHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc-----
Confidence 345567899999999999999998876653 468999999999999999999999998899999999875321
Q ss_pred CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
.+.||.|++||||..... .. . .....++.++|+.+.. |+.+|.+++
T Consensus 246 ----------~~~~D~Iv~dPPyg~~~~---~~-------------~--~~~~~l~~~~l~~~~r~Lk~gG~lv~ 292 (329)
T TIGR01177 246 ----------SESVDAIATDPPYGRSTT---AA-------------G--DGLESLYERSLEEFHEVLKSEGWIVY 292 (329)
T ss_pred ----------cCCCCEEEECCCCcCccc---cc-------------C--CchHHHHHHHHHHHHHHccCCcEEEE
Confidence 246899999999965332 10 0 1245678889988865 788887776
No 24
>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=2.1e-10 Score=103.22 Aligned_cols=73 Identities=30% Similarity=0.464 Sum_probs=67.4
Q ss_pred CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (422)
Q Consensus 123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V 202 (422)
...|+||++|...|++|||||+|||+.++..+++||.|.|.. +.++.++
T Consensus 76 ~~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik~Gd~VvV~~-------------------------------e~~~~pl 124 (161)
T COG2016 76 KYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVVD-------------------------------EKKGRPL 124 (161)
T ss_pred ccEEEEcCccHhhhcCCCceeccceeecCCCccCCCEEEEEE-------------------------------cCCCCee
Confidence 348999999999999999999999999999999999999984 5668899
Q ss_pred EEccCccCHHHHhcccCcceeecc
Q 014571 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 203 rvg~a~msreel~~~~~GiaV~~~ 226 (422)
++|.+.|+.++|.+..+|.+++..
T Consensus 125 AVG~alm~~~em~~~~kGkav~~i 148 (161)
T COG2016 125 AVGIALMSGKEMEEKKKGKAVKNI 148 (161)
T ss_pred EEEeeccCHHHHhhhcCCeEEEEE
Confidence 999999999999999999998854
No 25
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.07 E-value=3.4e-10 Score=115.34 Aligned_cols=142 Identities=13% Similarity=0.117 Sum_probs=96.8
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc-cccCCC
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP-NMCNSK 341 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~-~~~~~~ 341 (422)
.+|||+|||+|..++.++... .+|+|+|.++..++.+++|++..|+.|++++.+|+.++........... ......
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 275 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL 275 (353)
T ss_pred CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence 479999999999999999874 4899999999999999999999999999999999988653210000000 000000
Q ss_pred CCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH-HHH-HHHHHhccceeccEEEe-----hhhHHH
Q 014571 342 DNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM-AQE-EINALVVGLRIQKVLVL-----TALIES 412 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~-~Q~-~IL~~a~~lr~~~~~~~-----t~~~~~ 412 (422)
....||.|++|||.+|.+. ++.+.+ | +..-+-+|.+ ++. ++-.-..++++.++..+ |.|+|+
T Consensus 276 ~~~~~d~v~lDPPR~G~~~~~l~~l~~-~--------~~ivYvsC~p~tlaRDl~~L~~~Y~l~~v~~~DmFP~T~HvE~ 346 (353)
T TIGR02143 276 KSYNCSTIFVDPPRAGLDPDTCKLVQA-Y--------ERILYISCNPETLKANLEQLSETHRVERFALFDQFPYTHHMEC 346 (353)
T ss_pred ccCCCCEEEECCCCCCCcHHHHHHHHc-C--------CcEEEEEcCHHHHHHHHHHHhcCcEEEEEEEcccCCCCCcEEE
Confidence 0124899999999998543 244444 3 2333445544 232 22221234999999888 999999
Q ss_pred HHhh
Q 014571 413 FLML 416 (422)
Q Consensus 413 ~~~~ 416 (422)
+-.|
T Consensus 347 v~lL 350 (353)
T TIGR02143 347 GVLL 350 (353)
T ss_pred EEEE
Confidence 7543
No 26
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.07 E-value=9.4e-10 Score=104.17 Aligned_cols=92 Identities=13% Similarity=0.201 Sum_probs=78.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
......+++++|++|||++||+|..|..+++..+..++|+++|+++..++.+++++++.|++|++++.+|+.....
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~---- 142 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE---- 142 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc----
Confidence 3455678899999999999999999999999877678999999999999999999999999999999999864321
Q ss_pred CCCCccccCCCCCCCCCceeecCCccc
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg 357 (422)
....||.|++|+++..
T Consensus 143 -----------~~~~fD~Ii~~~~~~~ 158 (215)
T TIGR00080 143 -----------PLAPYDRIYVTAAGPK 158 (215)
T ss_pred -----------ccCCCCEEEEcCCccc
Confidence 1246999999987654
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.07 E-value=8.8e-10 Score=100.76 Aligned_cols=121 Identities=18% Similarity=0.144 Sum_probs=94.6
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 326 (422)
|.+|.+.+..+...++.+|||+|||+|-.+..+++.. +..+|+++|+++..++.+++|++..++.+++++..|.....
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~- 94 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL- 94 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-
Confidence 7788888888887789999999999999999999875 45689999999999999999999999988999998875422
Q ss_pred ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEE
Q 014571 327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLV 405 (422)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~ 405 (422)
....||.|+++||....+. .-...++++++.+.. |+.+|.+.
T Consensus 95 ---------------~~~~fD~Iv~NPP~~~~~~----------------------~~~~~~~~~i~~a~~~Lk~~G~l~ 137 (170)
T PF05175_consen 95 ---------------PDGKFDLIVSNPPFHAGGD----------------------DGLDLLRDFIEQARRYLKPGGRLF 137 (170)
T ss_dssp ---------------CTTCEEEEEE---SBTTSH----------------------CHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------cccceeEEEEccchhcccc----------------------cchhhHHHHHHHHHHhccCCCEEE
Confidence 1367999999999111111 233467788877754 89999885
Q ss_pred e
Q 014571 406 L 406 (422)
Q Consensus 406 ~ 406 (422)
+
T Consensus 138 l 138 (170)
T PF05175_consen 138 L 138 (170)
T ss_dssp E
T ss_pred E
Confidence 5
No 28
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.06 E-value=7.6e-10 Score=107.67 Aligned_cols=123 Identities=16% Similarity=0.109 Sum_probs=91.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
++.+|||+|||+|..++.+++..+ ..+|+++|+++..++.+++|++..| ++++++|..+....
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~------------- 148 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT------------- 148 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-------------
Confidence 356899999999999999998754 3689999999999999999999876 36788887653210
Q ss_pred CCCCCCCceeecCCccccCchhhhhhC-CCCCccccc----cCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEG-LNGDKSCKE----KGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~-p~~~~~w~~----~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
...+.||.|++||||...+. +.+. |+.. .+.+ .+. .+-...+++|++++.. |+.+|.+++
T Consensus 149 ~~~~~fDlVv~NPPy~~~~~---~~~~~~e~~-~~ep~~al~gg--~dgl~~~~~i~~~a~~~L~~gG~l~l 214 (251)
T TIGR03704 149 ALRGRVDILAANAPYVPTDA---IALMPPEAR-DHEPRVALDGG--ADGLDVLRRVAAGAPDWLAPGGHLLV 214 (251)
T ss_pred hcCCCEeEEEECCCCCCchh---hhcCCHHHH-hCCCHHHhcCC--CcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 01246999999999998877 4332 3322 1111 111 2456689999998865 899999998
No 29
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.06 E-value=9e-10 Score=93.20 Aligned_cols=111 Identities=16% Similarity=0.064 Sum_probs=84.8
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
|.+|||+|||.|..+.++++.. ..+++++|+++..++.+++++.+.++ .+++++++|.++.....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~------------ 66 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL------------ 66 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC------------
T ss_pred CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc------------
Confidence 6799999999999999999884 58999999999999999999999988 57999999998875221
Q ss_pred CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
..+.||.|+.|+|...... ..+ .......++++++.. ||.+|++++
T Consensus 67 -~~~~~D~Iv~npP~~~~~~---~~~----------------~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 67 -PDGKFDLIVTNPPYGPRSG---DKA----------------ALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp -TTT-EEEEEE--STTSBTT-----------------------GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred -cCceeEEEEECCCCccccc---cch----------------hhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 1356999999999976433 100 011155577777765 899999876
No 30
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.06 E-value=1.5e-09 Score=91.01 Aligned_cols=110 Identities=23% Similarity=0.158 Sum_probs=82.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
||.+|||++||+|..+..+++.. +..+|+|+|+|+.+++.+++++.+.+. .+|++++.|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~------------- 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP------------- 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------------
Confidence 68999999999999999999943 468999999999999999999977665 7899999998 2211
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL 409 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~ 409 (422)
.....||.|+++. -+.... . .. .-++++|+++.. |+.+|.+++++|
T Consensus 66 -~~~~~~D~v~~~~-~~~~~~------------------~---~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 66 -DFLEPFDLVICSG-FTLHFL------------------L---PL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp -TTSSCEEEEEECS-GSGGGC------------------C---HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred -ccCCCCCEEEECC-Cccccc------------------c---ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1134589999854 211101 0 12 456677777754 899999999875
No 31
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.06 E-value=6.4e-10 Score=107.26 Aligned_cols=85 Identities=20% Similarity=0.209 Sum_probs=75.5
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
...+..+.+.+|++|||+|||+|.-|.++++..+ .|+|+++|+|.+|++.+++++...|..+|+++.+||..++.++
T Consensus 41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D-- 117 (238)
T COG2226 41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD-- 117 (238)
T ss_pred HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC--
Confidence 4455666677999999999999999999999987 8999999999999999999999999988999999999987543
Q ss_pred CCCCccccCCCCCCCCCceee
Q 014571 331 SNDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLv 351 (422)
++||.|.+
T Consensus 118 -------------~sFD~vt~ 125 (238)
T COG2226 118 -------------NSFDAVTI 125 (238)
T ss_pred -------------CccCEEEe
Confidence 46888877
No 32
>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []. PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....
Probab=99.04 E-value=3.2e-10 Score=90.16 Aligned_cols=71 Identities=35% Similarity=0.561 Sum_probs=61.7
Q ss_pred CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG 203 (422)
Q Consensus 124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr 203 (422)
+.|+||++|++++++||++|+|||+.++.+|++||.|.|+ ...+.+|+
T Consensus 1 g~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~~gd~V~i~--------------------------------~~~g~~ia 48 (74)
T PF01472_consen 1 GRVVVDDGAVEAILNGASLFAPGVVEVDGDFRKGDEVAIV--------------------------------DEDGEVIA 48 (74)
T ss_dssp EEEEE-HHHHHHHHTTSEEEGGGEEEEETT--TTSEEEEE--------------------------------ETTSSEEE
T ss_pred CEEEECccHHHHHHcCCCcchHHhEECCCCcCCCCEEEEE--------------------------------cCCCeEEE
Confidence 3689999999999999999999999999999999999999 33478999
Q ss_pred EccCccCHHHHhcccCcceeecc
Q 014571 204 QGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 204 vg~a~msreel~~~~~GiaV~~~ 226 (422)
+|++.++++++.+..+|.+++..
T Consensus 49 ~G~a~~ss~ei~~~~~g~~~~~~ 71 (74)
T PF01472_consen 49 VGRANMSSEEIKKMKKGKAVKIR 71 (74)
T ss_dssp EEEESSTHHHHHHHSSSEEEEEE
T ss_pred EEEEecCHHHHHHHcCCcEehhh
Confidence 99999999999998899888753
No 33
>PRK14967 putative methyltransferase; Provisional
Probab=99.03 E-value=1.7e-09 Score=102.91 Aligned_cols=138 Identities=22% Similarity=0.211 Sum_probs=98.1
Q ss_pred cceEEEeChhHHHHHHhc---CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571 240 EGEIFLQNLPSIVTAHAL---DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L---~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~ 316 (422)
.|.+..|. .|.+.+..+ .++++++|||+|||+|..+..++.. +.++|+++|+++.+++.+++|+++.|+ ++.+
T Consensus 13 ~g~~~p~~-ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~ 88 (223)
T PRK14967 13 PGVYRPQE-DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDV 88 (223)
T ss_pred CCCcCCCC-cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEE
Confidence 45555555 445555544 4678999999999999999998876 235999999999999999999999887 5788
Q ss_pred EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCC---ccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM---KLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA 393 (422)
Q Consensus 317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP---CSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~ 393 (422)
+.+|..... ..+.||.|++|+| |+..+. ..+.+.. .|.... +-...+..+++
T Consensus 89 ~~~d~~~~~----------------~~~~fD~Vi~npPy~~~~~~~~---~~~~~~~--~~~~~~----~~~~~~~~~l~ 143 (223)
T PRK14967 89 RRGDWARAV----------------EFRPFDVVVSNPPYVPAPPDAP---PSRGPAR--AWDAGP----DGRAVLDRLCD 143 (223)
T ss_pred EECchhhhc----------------cCCCeeEEEECCCCCCCCcccc---cccChhH--hhhCCC----cHHHHHHHHHH
Confidence 888875421 1246999999987 444443 3344443 244322 22345677888
Q ss_pred Hhcc-ceeccEEEe
Q 014571 394 LVVG-LRIQKVLVL 406 (422)
Q Consensus 394 ~a~~-lr~~~~~~~ 406 (422)
.+.. |+.+|.+++
T Consensus 144 ~a~~~Lk~gG~l~~ 157 (223)
T PRK14967 144 AAPALLAPGGSLLL 157 (223)
T ss_pred HHHHhcCCCcEEEE
Confidence 7765 899999887
No 34
>PRK14560 putative RNA-binding protein; Provisional
Probab=99.00 E-value=7.6e-10 Score=100.75 Aligned_cols=74 Identities=27% Similarity=0.444 Sum_probs=67.1
Q ss_pred CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~ 201 (422)
..+.|+||.+|++++++||++|+|||+.++.++++||.|.|.. +.++.+
T Consensus 75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 123 (160)
T PRK14560 75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVE-------------------------------ETHGKP 123 (160)
T ss_pred cCCEEEEeccHHHHHHCCCceecCeeeeCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 4689999999999999999999999999999999999999993 334788
Q ss_pred EEEccCccCHHHHhcccCcceeecc
Q 014571 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 202 Vrvg~a~msreel~~~~~GiaV~~~ 226 (422)
+++|++.++.+++.+..+|.+++..
T Consensus 124 vavG~~~~s~~ei~~~~kG~~v~~~ 148 (160)
T PRK14560 124 LAVGRALMDGDEMVEEKKGKAVKNI 148 (160)
T ss_pred EEEEEEeeCHHHHhhcCCceEEEEE
Confidence 9999999999999988999999864
No 35
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=98.98 E-value=3.8e-09 Score=104.59 Aligned_cols=129 Identities=24% Similarity=0.193 Sum_probs=93.6
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCc
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
+.++++.+|||+|||+|..+..++... +.++|+|+|+|+..++.+++|+++.|+. ++.++++|..... +
T Consensus 117 ~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------~--- 186 (284)
T TIGR03533 117 LEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------P--- 186 (284)
T ss_pred hccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------C---
Confidence 334566799999999999999999875 3579999999999999999999999984 6999999975421 0
Q ss_pred cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
...||.|++|||+...+. +..-+... .+.|..... ..--...+.|++.+.. |+.+|.+++
T Consensus 187 -------~~~fD~Iv~NPPy~~~~~---~~~l~~~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~ 249 (284)
T TIGR03533 187 -------GRKYDLIVSNPPYVDAED---MADLPAEY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV 249 (284)
T ss_pred -------CCCccEEEECCCCCCccc---hhhCCHhh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 235999999999988776 22222111 122211000 0122467788988865 899999988
No 36
>TIGR00451 unchar_dom_2 uncharacterized domain 2. This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.
Probab=98.97 E-value=7.1e-10 Score=94.24 Aligned_cols=88 Identities=25% Similarity=0.311 Sum_probs=73.6
Q ss_pred EEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhh
Q 014571 103 VFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182 (422)
Q Consensus 103 l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~ 182 (422)
++....|++.++. ..+.|+||.+|++++++||++|+|||+.++.++++||.|.|..
T Consensus 16 ~~ptl~~~~~~~~------~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~~~gd~V~I~~------------------ 71 (107)
T TIGR00451 16 VIPSLKGALKLME------DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDIKEGDDVVVVD------------------ 71 (107)
T ss_pred EcccHHHHHhChh------hCCEEEEChhHHHHHHCCccccCCeeEeCCCCcCCCCEEEEEE------------------
Confidence 3334466655432 4789999999999999999999999999999999999999993
Q ss_pred cccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccc
Q 014571 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHN 227 (422)
Q Consensus 183 ~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~ 227 (422)
+.++.++++|++.++++++.+..+|++++...
T Consensus 72 -------------~~~~~~iavG~a~~~s~e~~~~~~G~~v~~~h 103 (107)
T TIGR00451 72 -------------ENKDRPLAVGIALMSGEEMKEMDKGKAVKNIH 103 (107)
T ss_pred -------------CCCCeEEEEEEEecCHHHHHhcCCCeEEEEEE
Confidence 33368999999999999999889999988643
No 37
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.97 E-value=4.1e-09 Score=99.87 Aligned_cols=88 Identities=16% Similarity=0.270 Sum_probs=75.6
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
......+++++|++|||+|||+|..|..+++.++..++|+++|+++..++.+++++++.|+.|++++.+|+.....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~---- 141 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE---- 141 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC----
Confidence 3455677899999999999999999999999987778999999999999999999999999999999999864321
Q ss_pred CCCCccccCCCCCCCCCceeecC
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDa 353 (422)
..+.||+|++++
T Consensus 142 -----------~~~~fD~I~~~~ 153 (212)
T PRK13942 142 -----------ENAPYDRIYVTA 153 (212)
T ss_pred -----------cCCCcCEEEECC
Confidence 135699999864
No 38
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.97 E-value=6e-09 Score=95.63 Aligned_cols=132 Identities=14% Similarity=0.033 Sum_probs=95.6
Q ss_pred hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327 (422)
Q Consensus 248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~ 327 (422)
.-|.++...+...++.+|||+|||+|..+..++... .+|+++|+++.+++.+++|++..+. +++++.+|..+..
T Consensus 6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~-- 79 (179)
T TIGR00537 6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV-- 79 (179)
T ss_pred ccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--
Confidence 345667777777788999999999999999999863 2899999999999999999998886 5888888865421
Q ss_pred cCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
.+.||.|++++|+..... ..++++.....|.... .-...+.++|+.+.. |+.+|.+++
T Consensus 80 ---------------~~~fD~Vi~n~p~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Lk~gG~~~~ 138 (179)
T TIGR00537 80 ---------------RGKFDVILFNPPYLPLED--DLRRGDWLDVAIDGGK----DGRKVIDRFLDELPEILKEGGRVQL 138 (179)
T ss_pred ---------------CCcccEEEECCCCCCCcc--hhcccchhhhhhhcCC----chHHHHHHHHHhHHHhhCCCCEEEE
Confidence 236999999999965432 0222222111222211 123467888988865 899998887
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.93 E-value=9.7e-09 Score=102.83 Aligned_cols=124 Identities=23% Similarity=0.145 Sum_probs=90.8
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
+.+|||+|||+|..+..++... +..+|+|+|+|+..++.+++|+++.|+. +|+++++|..... +
T Consensus 134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------~-------- 198 (307)
T PRK11805 134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------P-------- 198 (307)
T ss_pred CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC------C--------
Confidence 4799999999999999999875 4579999999999999999999999985 5999999975421 0
Q ss_pred CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
...||.|++|||+.+.+.. ..-+... .+.|..... ..=-...+.|++.+.. |+.+|.+++
T Consensus 199 --~~~fDlIvsNPPyi~~~~~---~~l~~~~-~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~ 261 (307)
T PRK11805 199 --GRRYDLIVSNPPYVDAEDM---ADLPAEY-RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV 261 (307)
T ss_pred --CCCccEEEECCCCCCccch---hhcCHhh-ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 2359999999999998762 2111111 122211100 0112466788888865 899999998
No 40
>PTZ00146 fibrillarin; Provisional
Probab=98.93 E-value=4e-09 Score=104.40 Aligned_cols=84 Identities=23% Similarity=0.237 Sum_probs=67.0
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
+.++||++|||+|||||.+|.|+++.+++.|+|+|+|+++.+++.+.+.+++. +||.++..|++.... . .
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~-y---~---- 197 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK-Y---R---- 197 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh-h---h----
Confidence 45789999999999999999999999988899999999988777777766543 689999999875310 0 0
Q ss_pred ccCCCCCCCCCceeecCC
Q 014571 337 MCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaP 354 (422)
.....||.|++|..
T Consensus 198 ----~~~~~vDvV~~Dva 211 (293)
T PTZ00146 198 ----MLVPMVDVIFADVA 211 (293)
T ss_pred ----cccCCCCEEEEeCC
Confidence 01235899999984
No 41
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.91 E-value=5.5e-09 Score=99.11 Aligned_cols=94 Identities=21% Similarity=0.305 Sum_probs=76.0
Q ss_pred hhHHH--HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 248 LPSIV--TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 248 ~~S~l--v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.+|++ ...+|+++||++|||+++|+|-.|..++.+.++.|+|+++|+++.-++.++++++++|..||.++.+|+....
T Consensus 57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 35444 4577889999999999999999999999999988999999999999999999999999999999999987532
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
. ..+.||+|++.+.|.
T Consensus 137 ~---------------~~apfD~I~v~~a~~ 152 (209)
T PF01135_consen 137 P---------------EEAPFDRIIVTAAVP 152 (209)
T ss_dssp G---------------GG-SEEEEEESSBBS
T ss_pred c---------------cCCCcCEEEEeeccc
Confidence 1 135699999976654
No 42
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.90 E-value=1.1e-08 Score=96.27 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=74.4
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE 330 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~ 330 (422)
.....+++++|++|||++||+|..|..+++.++..++|+++|+++.+++.+++|+++.|+. +++++.+|+.....
T Consensus 63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~---- 138 (205)
T PRK13944 63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE---- 138 (205)
T ss_pred HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc----
Confidence 3456778899999999999999999999999876789999999999999999999999985 58999999865321
Q ss_pred CCCCccccCCCCCCCCCceeecCC
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
....||.|+++..
T Consensus 139 -----------~~~~fD~Ii~~~~ 151 (205)
T PRK13944 139 -----------KHAPFDAIIVTAA 151 (205)
T ss_pred -----------cCCCccEEEEccC
Confidence 1246999999754
No 43
>PRK04266 fibrillarin; Provisional
Probab=98.90 E-value=7e-09 Score=99.54 Aligned_cols=93 Identities=23% Similarity=0.274 Sum_probs=72.8
Q ss_pred ChhHHHHHHh--cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 247 NLPSIVTAHA--LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 247 d~~S~lv~~~--L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
..++.+.+.+ +++++|++|||+|||+|..|.++++.++ .|+|+|+|+++.+++.+.+++++. .||.++.+|+...
T Consensus 56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~ 132 (226)
T PRK04266 56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKP 132 (226)
T ss_pred chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCc
Confidence 4455555544 8899999999999999999999999886 789999999999999998888764 6899999998642
Q ss_pred hhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 325 VRRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
... . .....||.|++|.+
T Consensus 133 ~~~----~--------~l~~~~D~i~~d~~ 150 (226)
T PRK04266 133 ERY----A--------HVVEKVDVIYQDVA 150 (226)
T ss_pred chh----h--------hccccCCEEEECCC
Confidence 100 0 11245999998754
No 44
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.89 E-value=6.8e-09 Score=107.36 Aligned_cols=105 Identities=17% Similarity=0.122 Sum_probs=80.8
Q ss_pred ccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ce
Q 014571 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CI 314 (422)
Q Consensus 237 ~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv 314 (422)
..+.|.|+-|-..-..+... .+|.+|||+|||+|+.+++++. ++..+|+++|+++..++.+++|++..|+. ++
T Consensus 199 g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v 273 (396)
T PRK15128 199 GHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKA 273 (396)
T ss_pred ccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE
Confidence 34688888885544444333 3689999999999998877654 34569999999999999999999999984 79
Q ss_pred EEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571 315 TTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 315 ~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg 357 (422)
+++++|+..+..... .....||.|++|||+-.
T Consensus 274 ~~i~~D~~~~l~~~~-----------~~~~~fDlVilDPP~f~ 305 (396)
T PRK15128 274 EFVRDDVFKLLRTYR-----------DRGEKFDVIVMDPPKFV 305 (396)
T ss_pred EEEEccHHHHHHHHH-----------hcCCCCCEEEECCCCCC
Confidence 999999987653211 01346999999999844
No 45
>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein. This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).
Probab=98.87 E-value=3e-09 Score=95.81 Aligned_cols=74 Identities=23% Similarity=0.407 Sum_probs=67.4
Q ss_pred CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~ 201 (422)
..+.|+||.+|++++++||++|+|||+.++.++++||.|.|.. +.++.+
T Consensus 68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~ 116 (150)
T TIGR03684 68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSIKEGDIVFVVD-------------------------------ETHRKP 116 (150)
T ss_pred cCCEEEECccHHHHHhcCcccccCceecCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence 4699999999999999999999999999999999999999993 334789
Q ss_pred EEEccCccCHHHHhcccCcceeecc
Q 014571 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 202 Vrvg~a~msreel~~~~~GiaV~~~ 226 (422)
+++|++.++.+++....+|.+++..
T Consensus 117 vavG~a~~ss~ei~~~~kG~av~~~ 141 (150)
T TIGR03684 117 LAVGIALMDAEEMEEEKKGKAVKNI 141 (150)
T ss_pred EEEEEEeeCHHHHhhcCCCeEEEEE
Confidence 9999999999999988999998864
No 46
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.87 E-value=1.3e-08 Score=97.40 Aligned_cols=126 Identities=19% Similarity=0.088 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
.+.+|||+|||+|..+..+++... ...++++|+++.+++.++++++..|+.++.++++|+....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~--------------- 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL--------------- 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------------
Confidence 456999999999999999998754 4699999999999999999999999988999999976421
Q ss_pred CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
..+.||.|++++|+...+. +.........|.+..... ..-...-..+++++.. |+.+|.+++
T Consensus 151 -~~~~fD~Vi~npPy~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~ 215 (251)
T TIGR03534 151 -PGGKFDLIVSNPPYIPEAD---IHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL 215 (251)
T ss_pred -cCCceeEEEECCCCCchhh---hhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence 0246999999999998776 222221111121111000 0111223467777765 699999988
No 47
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.86 E-value=2.5e-08 Score=97.03 Aligned_cols=130 Identities=15% Similarity=0.011 Sum_probs=93.6
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
+...++.+|||+|||+|..+..++... +...|+++|+++.+++.+++|++.....++.++.+|.....
T Consensus 104 ~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~----------- 171 (275)
T PRK09328 104 LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL----------- 171 (275)
T ss_pred ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC-----------
Confidence 345678899999999999999999886 45899999999999999999998434467999998874321
Q ss_pred ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
..+.||.|++++|+...+. +..-+.....+.+...-. ..-...++.+++++.. |+.+|.+++
T Consensus 172 -----~~~~fD~Iv~npPy~~~~~---~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~ 236 (275)
T PRK09328 172 -----PGGRFDLIVSNPPYIPEAD---IHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL 236 (275)
T ss_pred -----CCCceeEEEECCCcCCcch---hhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 0256999999999998776 321111111222211100 1233567788888865 899999998
No 48
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.84 E-value=1.4e-08 Score=93.99 Aligned_cols=117 Identities=17% Similarity=0.122 Sum_probs=80.8
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
.-.+++|++|||+|||||+.|.+++..+.+.++|+++|+++.+ +..++.++++|............
T Consensus 27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~--- 92 (188)
T TIGR00438 27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRE--- 92 (188)
T ss_pred hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHH---
Confidence 4456889999999999999999999987667899999999864 23567888888764321000000
Q ss_pred cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
....+.||.|++|+++...|. |..... .....|..+|+++.. |+.+|.+++
T Consensus 93 ----~~~~~~~D~V~~~~~~~~~g~-------------~~~~~~---~~~~~~~~~l~~~~~~LkpgG~lvi 144 (188)
T TIGR00438 93 ----RVGDDKVDVVMSDAAPNISGY-------------WDIDHL---RSIDLVELALDIAKEVLKPKGNFVV 144 (188)
T ss_pred ----HhCCCCccEEEcCCCCCCCCC-------------ccccHH---HHHHHHHHHHHHHHHHccCCCEEEE
Confidence 001346999999986554444 333222 122357788888765 799999998
No 49
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=98.83 E-value=3.3e-08 Score=97.75 Aligned_cols=125 Identities=19% Similarity=0.112 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
++.+|||+|||+|..+..++.... ..+|+|+|+|+..++.+++|+++.|+.+ +.++++|.....
T Consensus 114 ~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-------------- 178 (284)
T TIGR00536 114 PILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-------------- 178 (284)
T ss_pred CCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--------------
Confidence 337999999999999999998753 4799999999999999999999999864 999999875421
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
....||.|+++||...... +...++.. .|.|...-. .+=-...+.|++.+.. |+.+|++++
T Consensus 179 --~~~~fDlIvsNPPyi~~~~---~~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~ 242 (284)
T TIGR00536 179 --AGQKIDIIVSNPPYIDEED---LADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC 242 (284)
T ss_pred --cCCCccEEEECCCCCCcch---hhcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence 0126999999999998765 22223322 233321100 0122367788888866 899999998
No 50
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.82 E-value=2.8e-08 Score=92.95 Aligned_cols=88 Identities=23% Similarity=0.275 Sum_probs=73.6
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKN 329 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~ 329 (422)
.++...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++++|+ .++.++.+|+.+....
T Consensus 30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~-- 107 (198)
T PRK00377 30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT-- 107 (198)
T ss_pred HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--
Confidence 3445567899999999999999999999998887778999999999999999999999994 7899999998754321
Q ss_pred CCCCCccccCCCCCCCCCceeec
Q 014571 330 ESNDEPNMCNSKDNNYITSQTSD 352 (422)
Q Consensus 330 ~~~~~~~~~~~~~~~~FD~VLvD 352 (422)
....||.|++.
T Consensus 108 ------------~~~~~D~V~~~ 118 (198)
T PRK00377 108 ------------INEKFDRIFIG 118 (198)
T ss_pred ------------cCCCCCEEEEC
Confidence 12458999984
No 51
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.81 E-value=1.4e-08 Score=92.65 Aligned_cols=83 Identities=18% Similarity=0.167 Sum_probs=61.9
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
+.|+|+|||-||-|.++|... .+|+|+|+++.|++.+++|++-+|+ ++|.++++|..+.......
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~----------- 66 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS----------- 66 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------------
T ss_pred CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc-----------
Confidence 479999999999999999983 5899999999999999999999996 5899999999986543210
Q ss_pred CCCCCCceeecCCccccCc
Q 014571 342 DNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg~G~ 360 (422)
...||.|++|||=-|..-
T Consensus 67 -~~~~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 67 -NKIFDVVFLSPPWGGPSY 84 (163)
T ss_dssp -----SEEEE---BSSGGG
T ss_pred -cccccEEEECCCCCCccc
Confidence 112799999999998766
No 52
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.80 E-value=3.5e-08 Score=109.02 Aligned_cols=133 Identities=15% Similarity=0.082 Sum_probs=96.0
Q ss_pred ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceEE
Q 014571 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITT 316 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~~ 316 (422)
+.|.|.-|-..-.++... .+|.+|||+|||+|+.+++++.. +..+|+++|+|+..++.+++|++..|+. ++++
T Consensus 519 ~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~ 593 (702)
T PRK11783 519 DTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRL 593 (702)
T ss_pred cceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEE
Confidence 456665554433334333 35889999999999999999975 3457999999999999999999999985 6999
Q ss_pred EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc
Q 014571 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV 396 (422)
Q Consensus 317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~ 396 (422)
+++|+.++.... ...||.|++|||+-+.+. ..+. .| ...+-..+++..+.
T Consensus 594 i~~D~~~~l~~~--------------~~~fDlIilDPP~f~~~~------~~~~--~~--------~~~~~y~~l~~~a~ 643 (702)
T PRK11783 594 IQADCLAWLKEA--------------REQFDLIFIDPPTFSNSK------RMED--SF--------DVQRDHVALIKDAK 643 (702)
T ss_pred EEccHHHHHHHc--------------CCCcCEEEECCCCCCCCC------ccch--hh--------hHHHHHHHHHHHHH
Confidence 999998764321 246999999999987543 1100 11 12223556777665
Q ss_pred c-ceeccEEEe
Q 014571 397 G-LRIQKVLVL 406 (422)
Q Consensus 397 ~-lr~~~~~~~ 406 (422)
. ++.+|++++
T Consensus 644 ~lL~~gG~l~~ 654 (702)
T PRK11783 644 RLLRPGGTLYF 654 (702)
T ss_pred HHcCCCCEEEE
Confidence 4 789999887
No 53
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.78 E-value=4e-08 Score=92.42 Aligned_cols=115 Identities=14% Similarity=0.045 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch-hhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA-LKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da-~~~~~~~~~~~~~~~~~~ 339 (422)
++.+|||+|||+|..+..+++.. +.+.|+++|+++.+++.++++++..+++++.++++|+ ..+....
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~----------- 107 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF----------- 107 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-----------
Confidence 67899999999999999999876 4578999999999999999999999998999999999 5433111
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA 408 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~ 408 (422)
..+.||.|++..|.. |...... .-...+..+|+.+.. |+.+|+++++.
T Consensus 108 --~~~~~D~V~~~~~~p-----------------~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 108 --PDGSLDRIYLNFPDP-----------------WPKKRHH--KRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred --CccccceEEEECCCC-----------------CCCcccc--ccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 134589998754311 2111100 011146778887764 89999998854
No 54
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.78 E-value=2e-08 Score=97.52 Aligned_cols=106 Identities=17% Similarity=0.184 Sum_probs=79.4
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEe
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK 318 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~ 318 (422)
.-.+|.-|.+ ++...|++.||.+||+.+.|.|..|..|+..+++.|+|+.+|+++.+++.+++|+++.|+. ||.+..
T Consensus 21 tQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~ 98 (247)
T PF08704_consen 21 TQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH 98 (247)
T ss_dssp S----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred cceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence 4557888875 5667899999999999999999999999999999999999999999999999999999994 799999
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G 359 (422)
.|..+.-.. . .....||.|++|-|.--.-
T Consensus 99 ~Dv~~~g~~-----~-------~~~~~~DavfLDlp~Pw~~ 127 (247)
T PF08704_consen 99 RDVCEEGFD-----E-------ELESDFDAVFLDLPDPWEA 127 (247)
T ss_dssp S-GGCG--S-----T-------T-TTSEEEEEEESSSGGGG
T ss_pred cceeccccc-----c-------cccCcccEEEEeCCCHHHH
Confidence 997642210 0 1135689999999876543
No 55
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.77 E-value=3.4e-08 Score=88.07 Aligned_cols=82 Identities=21% Similarity=0.231 Sum_probs=69.2
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
+.+.+|||+|||+|..+..++....+.++++++|+++.+++.+++++++.+++|+++.+.|...+...
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~------------ 69 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE------------ 69 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC------------
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc------------
Confidence 56889999999999999999966566789999999999999999999999999999999999874210
Q ss_pred CCCCCCCCceeecCCc
Q 014571 340 SKDNNYITSQTSDSMK 355 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPC 355 (422)
..+.||.|+++.++
T Consensus 70 --~~~~~D~I~~~~~l 83 (152)
T PF13847_consen 70 --LEEKFDIIISNGVL 83 (152)
T ss_dssp --SSTTEEEEEEESTG
T ss_pred --cCCCeeEEEEcCch
Confidence 11568999997555
No 56
>PRK14968 putative methyltransferase; Provisional
Probab=98.75 E-value=1.1e-07 Score=86.67 Aligned_cols=132 Identities=17% Similarity=0.092 Sum_probs=93.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhhc
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRR 327 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~ 327 (422)
+.+....+...++.+|||+|||.|..+..++.. ...|+++|+++..++.++++++..++.+ +.++..|.....
T Consensus 12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~-- 86 (188)
T PRK14968 12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF-- 86 (188)
T ss_pred HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence 455666666788999999999999999999987 4799999999999999999999988866 888888865421
Q ss_pred cCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
....||.|+.++|....+. ..+..+ ++.+..... ..-......+++.+.. |+.+|.+++
T Consensus 87 --------------~~~~~d~vi~n~p~~~~~~---~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~~~Lk~gG~~~~ 146 (188)
T PRK14968 87 --------------RGDKFDVILFNPPYLPTEE---EEEWDD-WLNYALSGG--KDGREVIDRFLDEVGRYLKPGGRILL 146 (188)
T ss_pred --------------cccCceEEEECCCcCCCCc---hhhhhh-hhhhhhccC--cChHHHHHHHHHHHHHhcCCCeEEEE
Confidence 0236999999999876554 211111 111111111 1123345677777755 788887766
No 57
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.75 E-value=5.5e-08 Score=90.65 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=73.5
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~ 319 (422)
.|.-..|....++....+++++|++|||+|||+|..|..++... +.++|+++|+++.+++.+++|++++|+.+++++.+
T Consensus 19 ~~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~ 97 (196)
T PRK07402 19 PGIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG 97 (196)
T ss_pred CCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence 34446688888888889999999999999999999999998764 45899999999999999999999999989999999
Q ss_pred chhh
Q 014571 320 DALK 323 (422)
Q Consensus 320 Da~~ 323 (422)
|+..
T Consensus 98 d~~~ 101 (196)
T PRK07402 98 SAPE 101 (196)
T ss_pred chHH
Confidence 9865
No 58
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.74 E-value=5.8e-08 Score=92.22 Aligned_cols=87 Identities=23% Similarity=0.280 Sum_probs=73.9
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
......+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.++++++++.+|+...+.
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~---- 110 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF---- 110 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC----
Confidence 3455677889999999999999999999999877778999999999999999999999888899999999876431
Q ss_pred CCCCccccCCCCCCCCCceeec
Q 014571 331 SNDEPNMCNSKDNNYITSQTSD 352 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvD 352 (422)
..+.||.|++.
T Consensus 111 -----------~~~~fD~V~~~ 121 (231)
T TIGR02752 111 -----------DDNSFDYVTIG 121 (231)
T ss_pred -----------CCCCccEEEEe
Confidence 13468998863
No 59
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.74 E-value=7.3e-08 Score=90.83 Aligned_cols=87 Identities=16% Similarity=0.244 Sum_probs=72.8
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~ 331 (422)
.....++++++++|||+|||+|..|..++.+. ++|+++|+++.+++.+++++++.|+.++++..+|+.....
T Consensus 69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----- 140 (212)
T PRK00312 69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP----- 140 (212)
T ss_pred HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----
Confidence 44567889999999999999999999888874 4899999999999999999999999999999998753210
Q ss_pred CCCccccCCCCCCCCCceeecCCcc
Q 014571 332 NDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
..+.||.|+++++|.
T Consensus 141 ----------~~~~fD~I~~~~~~~ 155 (212)
T PRK00312 141 ----------AYAPFDRILVTAAAP 155 (212)
T ss_pred ----------cCCCcCEEEEccCch
Confidence 125699999988654
No 60
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.73 E-value=5.9e-08 Score=91.44 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=67.6
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.++.+|||+|||.|..++.+++.. .++|+++|+++..++.+++|++..|+.++.++++|+......
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~------------ 117 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ------------ 117 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh------------
Confidence 578899999999999998655442 469999999999999999999999998999999998765321
Q ss_pred CCCCCCCCceeecCC-ccc
Q 014571 340 SKDNNYITSQTSDSM-KLH 357 (422)
Q Consensus 340 ~~~~~~FD~VLvDaP-CSg 357 (422)
....||.|++||| ..|
T Consensus 118 --~~~~fDlV~~DPPy~~g 134 (199)
T PRK10909 118 --PGTPHNVVFVDPPFRKG 134 (199)
T ss_pred --cCCCceEEEECCCCCCC
Confidence 0235899999999 443
No 61
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.73 E-value=6e-08 Score=96.55 Aligned_cols=94 Identities=16% Similarity=0.109 Sum_probs=79.0
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+...|.++||..++|++||.||.|..+++.+++.|+|+|+|+++..++.++++++. ..++++++.|...+......
T Consensus 11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~-- 86 (296)
T PRK00050 11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAE-- 86 (296)
T ss_pred HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHc--
Confidence 55677889999999999999999999999987789999999999999999998876 46899999999876532211
Q ss_pred CCccccCCCCCCCCCceeecCCccccC
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHKE 359 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G 359 (422)
....||.|++|--+|+.-
T Consensus 87 ---------~~~~vDgIl~DLGvSs~Q 104 (296)
T PRK00050 87 ---------GLGKVDGILLDLGVSSPQ 104 (296)
T ss_pred ---------CCCccCEEEECCCccccc
Confidence 012589999999999873
No 62
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.73 E-value=1e-07 Score=80.75 Aligned_cols=111 Identities=24% Similarity=0.263 Sum_probs=85.4
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
...+.+.++++|||++||+|..+..+++.+++ ++|+++|.++.+++.++++++..++.+++++..|+..... .
T Consensus 12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~ 84 (124)
T TIGR02469 12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE------D 84 (124)
T ss_pred HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh------h
Confidence 34557778899999999999999999998654 8999999999999999999999998889998888653211 0
Q ss_pred CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL 409 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~ 409 (422)
....||.|+++. . . . ...++++.+.. ++.+|.++++.+
T Consensus 85 --------~~~~~D~v~~~~------~---~--------------~-------~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 85 --------SLPEPDRVFIGG------S---G--------------G-------LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred --------hcCCCCEEEECC------c---c--------------h-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence 124689998842 1 0 0 12367777755 799999998764
No 63
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.72 E-value=8.4e-08 Score=90.56 Aligned_cols=99 Identities=16% Similarity=0.226 Sum_probs=79.9
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~ 319 (422)
.|....|=---.....+|+++||++||++++|+|--|..||++. ++|+++|+.+.-.+.+++|++++|+.||.+.++
T Consensus 51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g 127 (209)
T COG2518 51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG 127 (209)
T ss_pred CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence 45554442222334678899999999999999999999999995 599999999999999999999999999999999
Q ss_pred chhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
|+.+-. ...+.||+|++-+-+.
T Consensus 128 DG~~G~---------------~~~aPyD~I~Vtaaa~ 149 (209)
T COG2518 128 DGSKGW---------------PEEAPYDRIIVTAAAP 149 (209)
T ss_pred CcccCC---------------CCCCCcCEEEEeeccC
Confidence 987532 1246799999965433
No 64
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.71 E-value=8.1e-08 Score=96.83 Aligned_cols=86 Identities=15% Similarity=0.155 Sum_probs=72.5
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
...+++++|++|||+|||+|..|..+++..+..+.|+++|+++.+++.+++++++.|+.++.++.+|+......
T Consensus 73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------ 146 (322)
T PRK13943 73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------ 146 (322)
T ss_pred HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc------
Confidence 34567889999999999999999999998876689999999999999999999999999999999998653211
Q ss_pred CccccCCCCCCCCCceeecCC
Q 014571 334 EPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaP 354 (422)
...||.|++++.
T Consensus 147 ---------~~~fD~Ii~~~g 158 (322)
T PRK13943 147 ---------FAPYDVIFVTVG 158 (322)
T ss_pred ---------cCCccEEEECCc
Confidence 134899998643
No 65
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.69 E-value=3e-08 Score=92.22 Aligned_cols=86 Identities=23% Similarity=0.244 Sum_probs=65.0
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcccc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
-+|.+|||+|||+|.-.+..++. +..+|+.+|.++..++.+++|++.++..+ ++++..|+.........
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~-------- 110 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK-------- 110 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH--------
T ss_pred cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc--------
Confidence 37899999999999999887776 45699999999999999999999999976 99999998876643210
Q ss_pred CCCCCCCCCceeecCCcccc
Q 014571 339 NSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCSg~ 358 (422)
....||.|++|||--..
T Consensus 111 ---~~~~fDiIflDPPY~~~ 127 (183)
T PF03602_consen 111 ---KGEKFDIIFLDPPYAKG 127 (183)
T ss_dssp ---CTS-EEEEEE--STTSC
T ss_pred ---cCCCceEEEECCCcccc
Confidence 13579999999998654
No 66
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=98.67 E-value=1.3e-07 Score=97.31 Aligned_cols=143 Identities=20% Similarity=0.160 Sum_probs=104.0
Q ss_pred cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceE
Q 014571 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CIT 315 (422)
Q Consensus 238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~ 315 (422)
.+.|.|.=|=..-..+...+ .|.+|||+||-+||.|.|.|.. +..+|+++|.|..-++.+++|++-.|+. .+.
T Consensus 197 ~kTGfFlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~ 271 (393)
T COG1092 197 LKTGFFLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHR 271 (393)
T ss_pred ccceeeHHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCcccee
Confidence 47888888877655555544 3999999999999999998864 4559999999999999999999999984 489
Q ss_pred EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571 316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV 395 (422)
Q Consensus 316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a 395 (422)
++++|+.++..... .....||.|++|||- |.+++... |+... .+ .+|+..+
T Consensus 272 ~i~~Dvf~~l~~~~-----------~~g~~fDlIilDPPs--------F~r~k~~~--~~~~r----dy----~~l~~~~ 322 (393)
T COG1092 272 FIVGDVFKWLRKAE-----------RRGEKFDLIILDPPS--------FARSKKQE--FSAQR----DY----KDLNDLA 322 (393)
T ss_pred eehhhHHHHHHHHH-----------hcCCcccEEEECCcc--------cccCcccc--hhHHH----HH----HHHHHHH
Confidence 99999998876432 124579999999995 44444432 43321 11 2344444
Q ss_pred cc-ceeccEEEe---hhhHHHHH
Q 014571 396 VG-LRIQKVLVL---TALIESFL 414 (422)
Q Consensus 396 ~~-lr~~~~~~~---t~~~~~~~ 414 (422)
.. |+.+|+++. +.|+.+..
T Consensus 323 ~~iL~pgG~l~~~s~~~~~~~~~ 345 (393)
T COG1092 323 LRLLAPGGTLVTSSCSRHFSSDL 345 (393)
T ss_pred HHHcCCCCEEEEEecCCccCHHH
Confidence 43 678888888 55555543
No 67
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.67 E-value=1e-07 Score=92.14 Aligned_cols=96 Identities=18% Similarity=0.196 Sum_probs=83.2
Q ss_pred eEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecc
Q 014571 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD 320 (422)
Q Consensus 242 ~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~D 320 (422)
-+|+-|.+ +++..+++.||++|+|.+.|+|.-|..||..+++.|+|+.+|+.+.+++.+++|++.+|+.+ |....+|
T Consensus 77 iIyPKD~~--~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D 154 (256)
T COG2519 77 IIYPKDAG--YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD 154 (256)
T ss_pred eecCCCHH--HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence 46777754 67788999999999999999999999999999999999999999999999999999999977 8888888
Q ss_pred hhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571 321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC 355 (422)
.++... ...||.|++|-|-
T Consensus 155 v~~~~~----------------~~~vDav~LDmp~ 173 (256)
T COG2519 155 VREGID----------------EEDVDAVFLDLPD 173 (256)
T ss_pred cccccc----------------ccccCEEEEcCCC
Confidence 775421 2368999999764
No 68
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=98.63 E-value=1.2e-07 Score=91.79 Aligned_cols=134 Identities=16% Similarity=0.055 Sum_probs=101.7
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhh
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV 325 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 325 (422)
+.-|++.+.+..+....+|||+|||.|.-++.+|+...+ .+|+++|+.+...+.+++|.+-.++ ++|++++.|...+.
T Consensus 30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~ 108 (248)
T COG4123 30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL 108 (248)
T ss_pred ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence 446788899998888999999999999999999998654 8999999999999999999999887 56999999998765
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCC---ccccccCcccchhHHHHHHHHHHhcc-ceec
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGD---KSCKEKGRTCGECGMAQEEINALVVG-LRIQ 401 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~---~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~ 401 (422)
... ...+||.|+|.||-=-.+. - ++++.. .+|.... .=.++++.|.. ++.+
T Consensus 109 ~~~-------------~~~~fD~Ii~NPPyf~~~~---~-~~~~~~~~~Ar~e~~~--------~le~~i~~a~~~lk~~ 163 (248)
T COG4123 109 KAL-------------VFASFDLIICNPPYFKQGS---R-LNENPLRAIARHEITL--------DLEDLIRAAAKLLKPG 163 (248)
T ss_pred hcc-------------cccccCEEEeCCCCCCCcc---c-cCcChhhhhhhhhhcC--------CHHHHHHHHHHHccCC
Confidence 321 1346999999999988777 2 222211 1122111 11255665544 7899
Q ss_pred cEEEe
Q 014571 402 KVLVL 406 (422)
Q Consensus 402 ~~~~~ 406 (422)
|.+.+
T Consensus 164 G~l~~ 168 (248)
T COG4123 164 GRLAF 168 (248)
T ss_pred CEEEE
Confidence 99888
No 69
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.63 E-value=2e-07 Score=86.13 Aligned_cols=91 Identities=13% Similarity=0.113 Sum_probs=73.9
Q ss_pred EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.++..-..+...+++.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|+++.++.+++++.+|+...
T Consensus 15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~ 93 (187)
T PRK08287 15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE 93 (187)
T ss_pred chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence 344444566677888899999999999999999999874 4689999999999999999999999988899988886321
Q ss_pred hhccCCCCCCccccCCCCCCCCCceeecC
Q 014571 325 VRRKNESNDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDa 353 (422)
....||.|+++.
T Consensus 94 -----------------~~~~~D~v~~~~ 105 (187)
T PRK08287 94 -----------------LPGKADAIFIGG 105 (187)
T ss_pred -----------------cCcCCCEEEECC
Confidence 123589999853
No 70
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=98.62 E-value=3.4e-07 Score=94.88 Aligned_cols=145 Identities=12% Similarity=-0.000 Sum_probs=96.8
Q ss_pred cceEEEeChhHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571 240 EGEIFLQNLPSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~ 318 (422)
+|.+........++-.+++ .+++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|+++.|. ++++++
T Consensus 229 p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~ 306 (423)
T PRK14966 229 PNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAH 306 (423)
T ss_pred CCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEE
Confidence 4444444444455555553 4567899999999999999888764 457999999999999999999999886 799999
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCch----hhhhhCCCCCccccccCcccchhHHHHHHHHHH
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP----SIAAEGLNGDKSCKEKGRTCGECGMAQEEINAL 394 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l----~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~ 394 (422)
+|...... + ..+.||.|+++||-...+.. ...+-.|.. .|.. +.+ .+ ..=++|++.
T Consensus 307 gDl~e~~l-----~---------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~--AL~g-G~d--GL-~~yr~Ii~~ 366 (423)
T PRK14966 307 GSWFDTDM-----P---------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQI--ALTD-FSD--GL-SCIRTLAQG 366 (423)
T ss_pred cchhcccc-----c---------cCCCccEEEECCCCCCcchhhhcchhhhcCHHH--HhhC-CCc--hH-HHHHHHHHH
Confidence 99754311 0 12469999999998766541 111111111 1221 110 11 234577776
Q ss_pred hc-cceeccEEEe
Q 014571 395 VV-GLRIQKVLVL 406 (422)
Q Consensus 395 a~-~lr~~~~~~~ 406 (422)
+. -|+.+|.+++
T Consensus 367 a~~~LkpgG~lil 379 (423)
T PRK14966 367 APDRLAEGGFLLL 379 (423)
T ss_pred HHHhcCCCcEEEE
Confidence 64 4899998877
No 71
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.61 E-value=1.7e-07 Score=87.44 Aligned_cols=84 Identities=14% Similarity=0.074 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
+|.+|||+|||+|..++.+++.. ..+|+++|.++..++.+++|++..++. ++++++.|+.+......
T Consensus 49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~---------- 116 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA---------- 116 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh----------
Confidence 58899999999999999999873 358999999999999999999999985 69999999976542210
Q ss_pred CCCCCCCCceeecCCccc
Q 014571 340 SKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg 357 (422)
.....||.|++|||-..
T Consensus 117 -~~~~~~dvv~~DPPy~~ 133 (189)
T TIGR00095 117 -KKPTFDNVIYLDPPFFN 133 (189)
T ss_pred -ccCCCceEEEECcCCCC
Confidence 00124899999999864
No 72
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.60 E-value=3.7e-07 Score=93.88 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=97.9
Q ss_pred EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+++|.. -....+.+..+..+||+|||+|..+.++|... +...++|+|+++.+++.+.+++.+.|++|+.++++|+..
T Consensus 107 ~~~d~~--~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ 183 (390)
T PRK14121 107 YILDID--NFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL 183 (390)
T ss_pred ccCCHH--HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence 366754 23344556678899999999999999999986 568999999999999999999999999999999999987
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceecc
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQK 402 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~ 402 (422)
+.... ..+.||.|.+-.|+ - |....- +++ .|.+.|+.+.. |+.+|
T Consensus 184 ll~~~-------------~~~s~D~I~lnFPd--------------P---W~KkrH--RRl--v~~~fL~e~~RvLkpGG 229 (390)
T PRK14121 184 LLELL-------------PSNSVEKIFVHFPV--------------P---WDKKPH--RRV--ISEDFLNEALRVLKPGG 229 (390)
T ss_pred hhhhC-------------CCCceeEEEEeCCC--------------C---ccccch--hhc--cHHHHHHHHHHHcCCCc
Confidence 54221 13568999874332 2 321111 122 36788888866 89999
Q ss_pred EEEe-hhhHHHH
Q 014571 403 VLVL-TALIESF 413 (422)
Q Consensus 403 ~~~~-t~~~~~~ 413 (422)
.+.+ |++-+-+
T Consensus 230 ~l~l~TD~~~y~ 241 (390)
T PRK14121 230 TLELRTDSELYF 241 (390)
T ss_pred EEEEEEECHHHH
Confidence 9888 6554433
No 73
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.60 E-value=3e-07 Score=85.86 Aligned_cols=116 Identities=13% Similarity=0.102 Sum_probs=84.9
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
..+.+|||+|||+|..+..+|+.. +.+.|+++|++..+++.+++++++.|+.|++++++|+..++....
T Consensus 15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~---------- 83 (194)
T TIGR00091 15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF---------- 83 (194)
T ss_pred CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC----------
Confidence 345699999999999999999875 568999999999999999999999999999999999987642110
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
..+.||.|+++.|.- |....-. ..--.+.++++.+.. |+.+|.+.++
T Consensus 84 --~~~~~d~v~~~~pdp-----------------w~k~~h~--~~r~~~~~~l~~~~r~LkpgG~l~~~ 131 (194)
T TIGR00091 84 --PDGSLSKVFLNFPDP-----------------WPKKRHN--KRRITQPHFLKEYANVLKKGGVIHFK 131 (194)
T ss_pred --CCCceeEEEEECCCc-----------------CCCCCcc--ccccCCHHHHHHHHHHhCCCCEEEEE
Confidence 123589999876511 2111000 000125667777654 8999999873
No 74
>PRK13795 hypothetical protein; Provisional
Probab=98.60 E-value=2.9e-07 Score=100.68 Aligned_cols=157 Identities=21% Similarity=0.280 Sum_probs=106.2
Q ss_pred CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
...+.|+||++++++|++||+|++|||++++.++++||.|.|.. ..+.
T Consensus 124 ~~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~--------------------------------e~g~ 171 (636)
T PRK13795 124 RLKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVT--------------------------------EDGE 171 (636)
T ss_pred cCCcEEEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEe--------------------------------CCCC
Confidence 35789999999999999999999999999999999999999993 2356
Q ss_pred EEEEccCccCHHHHhcccCcceeeccccccCCCCcccc--------ccceEEEeChhHHHH---HHhcCCCCCCeEEEec
Q 014571 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV--------LEGEIFLQNLPSIVT---AHALDPQKGERILDMC 269 (422)
Q Consensus 201 ~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~--------~~G~~~~Qd~~S~lv---~~~L~p~pg~~VLD~C 269 (422)
.+++|+++|+.+++.+..+|.+++.....+..|.+... +.....+++.-.... -..+.-. ++.|. .
T Consensus 172 ~vavG~a~~s~~e~~~~~kG~~Vkvr~~~~~~~~l~~~~~~~~~~~~~n~~~l~~~~~~ai~~Ir~~~~~~-~~~v~--V 248 (636)
T PRK13795 172 VVGVGRAKMDGDDMIKRFRGRAVKVRKSGRGSPRLPPGRATLEDAIEANRKHLEEKEKEAVNFIRGVAEKY-NLPVS--V 248 (636)
T ss_pred EEEEEEeccCHHHHhhccCCeEEEEEEcccCCcccCCCcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc-CCCEE--E
Confidence 89999999999999999999999887666555544311 112222232222211 1111111 33443 2
Q ss_pred CCCChhHH----HHHhccCCCcEEEEEcCC---hHHHHHHHHHHHHhCCc
Q 014571 270 AAPGGKTT----AIASLLRDEGEVVAVDRS---HNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 270 AgpGgKT~----~la~l~~~~g~V~A~D~s---~~rl~~l~~~l~r~g~~ 312 (422)
|=.|||-. +++......-.++-+|.. +.-++.+++.++++|++
T Consensus 249 a~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~ 298 (636)
T PRK13795 249 SFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIE 298 (636)
T ss_pred EecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCc
Confidence 44577743 333332333466666633 55677788888888875
No 75
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.60 E-value=2.1e-07 Score=86.30 Aligned_cols=76 Identities=21% Similarity=0.296 Sum_probs=64.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
+|.+|||++||+|.-+..++.. .+.++|+|+|.++.+++.+++++++.|+.+++++++|+....
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~--------------- 105 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ--------------- 105 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------------
Confidence 4889999999999999988865 456899999999999999999999999988999999987641
Q ss_pred CCCCCCCceeecC
Q 014571 341 KDNNYITSQTSDS 353 (422)
Q Consensus 341 ~~~~~FD~VLvDa 353 (422)
..+.||.|++++
T Consensus 106 -~~~~fD~I~s~~ 117 (181)
T TIGR00138 106 -HEEQFDVITSRA 117 (181)
T ss_pred -ccCCccEEEehh
Confidence 024689998863
No 76
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.59 E-value=3.2e-07 Score=85.62 Aligned_cols=77 Identities=29% Similarity=0.286 Sum_probs=65.8
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
++|.+|||+|||+|..+..++... +.++|+++|.++.+++.++++++..|+++++++++|+.....
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------------- 109 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------------- 109 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence 348999999999999999999864 468999999999999999999999999889999999875321
Q ss_pred CCCCCCCCceeecC
Q 014571 340 SKDNNYITSQTSDS 353 (422)
Q Consensus 340 ~~~~~~FD~VLvDa 353 (422)
.+.||.|++++
T Consensus 110 ---~~~fDlV~~~~ 120 (187)
T PRK00107 110 ---EEKFDVVTSRA 120 (187)
T ss_pred ---CCCccEEEEcc
Confidence 24699999853
No 77
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.58 E-value=2.3e-07 Score=90.76 Aligned_cols=85 Identities=19% Similarity=0.249 Sum_probs=68.5
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH---hCCcceEEEecchhhhhhcc
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE---MGLKCITTYKLDALKAVRRK 328 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r---~g~~nv~~~~~Da~~~~~~~ 328 (422)
.+...+.++++++|||+|||+|..+..+++..++.++|+|+|+|+.+++.++++... .+..+++++++|+..++..
T Consensus 64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~- 142 (261)
T PLN02233 64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD- 142 (261)
T ss_pred HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-
Confidence 445567888999999999999999999998876678999999999999999887642 2346899999998765321
Q ss_pred CCCCCCccccCCCCCCCCCceee
Q 014571 329 NESNDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 143 --------------~~sfD~V~~ 151 (261)
T PLN02233 143 --------------DCYFDAITM 151 (261)
T ss_pred --------------CCCEeEEEE
Confidence 346898875
No 78
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional
Probab=98.57 E-value=1.1e-07 Score=103.70 Aligned_cols=73 Identities=19% Similarity=0.337 Sum_probs=67.2
Q ss_pred CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (422)
Q Consensus 123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V 202 (422)
.+.|+||++|++++.+||+||+|||++++.++++||+|.|.. +.+.++
T Consensus 563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~gDeV~Vv~--------------------------------e~~~~l 610 (639)
T PRK13534 563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRPYDEVLVVN--------------------------------EDDELL 610 (639)
T ss_pred CcEEEECCcchhhhhCCCcccCCcceecCCCCCCCCEEEEEe--------------------------------cCCcEE
Confidence 489999999999999999999999999999999999999992 246799
Q ss_pred EEccCccCHHHHhcccCcceeeccc
Q 014571 203 GQGTAMMSRAGIFRASEGIAVDMHN 227 (422)
Q Consensus 203 rvg~a~msreel~~~~~GiaV~~~~ 227 (422)
++|+++|+.++|.+..+|++++...
T Consensus 611 avG~A~~~~~em~~~~~G~avkvR~ 635 (639)
T PRK13534 611 AYGKALLNGRELMEFNYGLAVKVRG 635 (639)
T ss_pred EEEEEecCHHHHhhcCCceEEEEee
Confidence 9999999999999999999998653
No 79
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.56 E-value=3.6e-07 Score=84.54 Aligned_cols=90 Identities=12% Similarity=0.091 Sum_probs=64.7
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCc--------EEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecch
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--------EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA 321 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g--------~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da 321 (422)
...+.+.++++|+.|||-+||+|+.....|....+.. .+++.|++++.++.+++|++..|+.. |.+.+.|+
T Consensus 18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~ 97 (179)
T PF01170_consen 18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA 97 (179)
T ss_dssp HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence 3445677889999999999999988877766544333 49999999999999999999999854 89999999
Q ss_pred hhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571 322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC 355 (422)
++++.. .+.||.|++|+|-
T Consensus 98 ~~l~~~---------------~~~~d~IvtnPPy 116 (179)
T PF01170_consen 98 RELPLP---------------DGSVDAIVTNPPY 116 (179)
T ss_dssp GGGGGT---------------TSBSCEEEEE--S
T ss_pred hhcccc---------------cCCCCEEEECcch
Confidence 987621 2458999999997
No 80
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=98.55 E-value=3e-07 Score=91.19 Aligned_cols=131 Identities=21% Similarity=0.161 Sum_probs=91.5
Q ss_pred cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceE
Q 014571 238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCIT 315 (422)
Q Consensus 238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~ 315 (422)
.+.|.|.=|=..-.++.... .|.+|||+||-+||.|.+.+. ++..+|+++|.|..-++.+++|++..|+ ..++
T Consensus 103 qktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~ 177 (286)
T PF10672_consen 103 QKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR 177 (286)
T ss_dssp SSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE
T ss_pred CcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE
Confidence 36888888877777766653 588999999999999998765 3445899999999999999999999987 4699
Q ss_pred EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571 316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV 395 (422)
Q Consensus 316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a 395 (422)
+++.|+.+...... ..++||.|++|||.-.-+. |.. .+--.+|+..+
T Consensus 178 ~~~~Dvf~~l~~~~------------~~~~fD~IIlDPPsF~k~~-------------~~~--------~~~y~~L~~~a 224 (286)
T PF10672_consen 178 FIQGDVFKFLKRLK------------KGGRFDLIILDPPSFAKSK-------------FDL--------ERDYKKLLRRA 224 (286)
T ss_dssp EEES-HHHHHHHHH------------HTT-EEEEEE--SSEESST-------------CEH--------HHHHHHHHHHH
T ss_pred EEecCHHHHHHHHh------------cCCCCCEEEECCCCCCCCH-------------HHH--------HHHHHHHHHHH
Confidence 99999988654211 1357999999999664332 221 12233566666
Q ss_pred cc-ceeccEEEe
Q 014571 396 VG-LRIQKVLVL 406 (422)
Q Consensus 396 ~~-lr~~~~~~~ 406 (422)
.. ++.+|.|+.
T Consensus 225 ~~ll~~gG~l~~ 236 (286)
T PF10672_consen 225 MKLLKPGGLLLT 236 (286)
T ss_dssp HHTEEEEEEEEE
T ss_pred HHhcCCCCEEEE
Confidence 55 788998887
No 81
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.54 E-value=3.8e-07 Score=89.10 Aligned_cols=82 Identities=17% Similarity=0.164 Sum_probs=69.3
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
...+++|++|||++||+|.-+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|....+.
T Consensus 72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~--------- 142 (272)
T PRK11873 72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV--------- 142 (272)
T ss_pred hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC---------
Confidence 35678999999999999988888888877778999999999999999999999999899999998765421
Q ss_pred cccCCCCCCCCCceeec
Q 014571 336 NMCNSKDNNYITSQTSD 352 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvD 352 (422)
..+.||.|+.+
T Consensus 143 ------~~~~fD~Vi~~ 153 (272)
T PRK11873 143 ------ADNSVDVIISN 153 (272)
T ss_pred ------CCCceeEEEEc
Confidence 12468988865
No 82
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.53 E-value=2.9e-07 Score=86.78 Aligned_cols=86 Identities=21% Similarity=0.127 Sum_probs=63.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
.++|++|+||+||-|..|+++|.. +....|+|+|+++.-++.+++|++..++++ |.++++|++.+..
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~----------- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP----------- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------------
T ss_pred CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-----------
Confidence 678999999999999999999985 345689999999999999999999999866 8899999998753
Q ss_pred cCCCCCCCCCceeecCCccccCch
Q 014571 338 CNSKDNNYITSQTSDSMKLHKEVP 361 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPCSg~G~l 361 (422)
...||+|+.+-|=++...+
T Consensus 167 -----~~~~drvim~lp~~~~~fl 185 (200)
T PF02475_consen 167 -----EGKFDRVIMNLPESSLEFL 185 (200)
T ss_dssp -----TT-EEEEEE--TSSGGGGH
T ss_pred -----ccccCEEEECChHHHHHHH
Confidence 2458999999997776663
No 83
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.53 E-value=4e-07 Score=87.76 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=77.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhcc
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRK 328 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~ 328 (422)
.++...++...++.+|||+|+|.|.-++.++..+.+.|+|+++|+++.+++.+++|+++.|+. +|+++.+|+.+.....
T Consensus 57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l 136 (234)
T PLN02781 57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL 136 (234)
T ss_pred HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence 345555666677889999999999999999998888899999999999999999999999985 6999999998764322
Q ss_pred CCCCCCccccCCCCCCCCCceeecCC
Q 014571 329 NESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
... ...+.||.|++|++
T Consensus 137 ~~~---------~~~~~fD~VfiDa~ 153 (234)
T PLN02781 137 LNN---------DPKPEFDFAFVDAD 153 (234)
T ss_pred HhC---------CCCCCCCEEEECCC
Confidence 100 01356999999975
No 84
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.52 E-value=6.3e-07 Score=83.17 Aligned_cols=100 Identities=16% Similarity=0.048 Sum_probs=75.1
Q ss_pred EEEeChhHHHHH--HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571 243 IFLQNLPSIVTA--HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (422)
Q Consensus 243 ~~~Qd~~S~lv~--~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D 320 (422)
-.+-+.++.++. +..+.-.|.+|+|+|||+|..++..+-+ +..+|+|+|+++..++.+++|+.+ +..+|.++..|
T Consensus 25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~d 101 (198)
T COG2263 25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVAD 101 (198)
T ss_pred CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcc
Confidence 333444444433 3334557889999999999887766655 457999999999999999999999 44679999999
Q ss_pred hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCC
Q 014571 321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLN 369 (422)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~ 369 (422)
.+++ ...||.|+-+||= |. .+||+|
T Consensus 102 v~~~------------------~~~~dtvimNPPF---G~---~~rhaD 126 (198)
T COG2263 102 VSDF------------------RGKFDTVIMNPPF---GS---QRRHAD 126 (198)
T ss_pred hhhc------------------CCccceEEECCCC---cc---ccccCC
Confidence 8764 3567899999994 55 456655
No 85
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.50 E-value=6.4e-07 Score=83.32 Aligned_cols=83 Identities=22% Similarity=0.252 Sum_probs=69.7
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
-.|.+|||++||+|.-.+..++. +..+++.+|.+.+-+..+++|++.+|+ .+++++..|+..+.....
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--------- 110 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--------- 110 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC---------
Confidence 37899999999999999888876 467999999999999999999999996 568999999986543221
Q ss_pred CCCCCCCCCceeecCCcc
Q 014571 339 NSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCS 356 (422)
..+.||.|++|||--
T Consensus 111 ---~~~~FDlVflDPPy~ 125 (187)
T COG0742 111 ---TREPFDLVFLDPPYA 125 (187)
T ss_pred ---CCCcccEEEeCCCCc
Confidence 123599999999987
No 86
>PLN02476 O-methyltransferase
Probab=98.49 E-value=7.2e-07 Score=88.13 Aligned_cols=102 Identities=16% Similarity=0.147 Sum_probs=83.4
Q ss_pred EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~ 323 (422)
+.....++...++...++.+|||++++.|.-|+.+|..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|+.+
T Consensus 102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e 181 (278)
T PLN02476 102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE 181 (278)
T ss_pred cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence 34445566666777778899999999999999999999988899999999999999999999999995 79999999988
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC 355 (422)
........ ...+.||.|++|++=
T Consensus 182 ~L~~l~~~---------~~~~~FD~VFIDa~K 204 (278)
T PLN02476 182 SLKSMIQN---------GEGSSYDFAFVDADK 204 (278)
T ss_pred HHHHHHhc---------ccCCCCCEEEECCCH
Confidence 65432100 013579999999984
No 87
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.48 E-value=7.1e-07 Score=89.99 Aligned_cols=123 Identities=17% Similarity=0.136 Sum_probs=95.4
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec-chhhhhhcc
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRK 328 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~ 328 (422)
|-..+.+..+++|+.|||=.||+||......- | .+++++.|++..|++-++.|++.+|++...+... |+++++.+
T Consensus 186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~- 261 (347)
T COG1041 186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR- 261 (347)
T ss_pred HHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC-
Confidence 34556777899999999999999997766544 4 4799999999999999999999999988877777 99987632
Q ss_pred CCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
...||.|.+|||---.-. . +. ..+.++=.++|+.+.. |+.+|.+|+.
T Consensus 262 --------------~~~vdaIatDPPYGrst~---~-------------~~--~~l~~Ly~~~le~~~evLk~gG~~vf~ 309 (347)
T COG1041 262 --------------DNSVDAIATDPPYGRSTK---I-------------KG--EGLDELYEEALESASEVLKPGGRIVFA 309 (347)
T ss_pred --------------CCccceEEecCCCCcccc---c-------------cc--ccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence 235899999999743332 0 11 1266677888888866 7888989885
Q ss_pred h
Q 014571 408 A 408 (422)
Q Consensus 408 ~ 408 (422)
+
T Consensus 310 ~ 310 (347)
T COG1041 310 A 310 (347)
T ss_pred c
Confidence 4
No 88
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.47 E-value=6e-07 Score=92.56 Aligned_cols=93 Identities=19% Similarity=0.175 Sum_probs=74.1
Q ss_pred EeChhHHHHHHhcCCC-CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 245 LQNLPSIVTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~-pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
-+|+.. +++..+... ++.+|||++||.|..++.+|...+ ..+|+++|+++..++.+++|++..|++++++++.|+..
T Consensus 41 nrdl~~-~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~ 118 (382)
T PRK04338 41 NRDISV-LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA 118 (382)
T ss_pred hhhHHH-HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence 345543 334444433 568999999999999999988754 35899999999999999999999999989999999987
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
+... ...||.|++|||
T Consensus 119 ~l~~---------------~~~fD~V~lDP~ 134 (382)
T PRK04338 119 LLHE---------------ERKFDVVDIDPF 134 (382)
T ss_pred HHhh---------------cCCCCEEEECCC
Confidence 6421 134899999999
No 89
>PRK13794 hypothetical protein; Provisional
Probab=98.47 E-value=8.5e-07 Score=93.98 Aligned_cols=163 Identities=22% Similarity=0.284 Sum_probs=106.4
Q ss_pred CCCEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
..+.|+||++++++|+ +|++||+|||++++.++++||.|.|.. ..+.
T Consensus 123 ~~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~--------------------------------~~g~ 170 (479)
T PRK13794 123 KKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILD--------------------------------ENGD 170 (479)
T ss_pred CCcEEEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEc--------------------------------CCCc
Confidence 3578999999999999 999999999999999999999999992 2456
Q ss_pred EEEEccCccCHHHHhcccCcceeeccccc----cCC----CCcc----c-cccceEEEeChhH---HHHHHhcCCCCCCe
Q 014571 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRI----FQL----PSFY----D-VLEGEIFLQNLPS---IVTAHALDPQKGER 264 (422)
Q Consensus 201 ~Vrvg~a~msreel~~~~~GiaV~~~~~~----~~~----p~~~----~-~~~G~~~~Qd~~S---~lv~~~L~p~pg~~ 264 (422)
.+++|++.++.+++....+|++|+..... ++. +.+. + ++...-.++.... .+.-..++ .-+.+
T Consensus 171 ~iavG~a~~s~~ei~~~~~G~~Vkvr~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~i~~~~~-~~~~~ 249 (479)
T PRK13794 171 VVGVGRARMSYEEIVNMEKGMVVKVRKSEEPKNSNILSEYGPGEETWKDMVEANKNVLDKYERNSIGFIRNTAE-KINKP 249 (479)
T ss_pred EEEEEEeecCHHHHHhccCceEEEEEeccCCcccccccccCCcCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 99999999999999999999998875421 111 1111 1 1111112222222 12222221 12344
Q ss_pred EEEecCCCChhHH----HHHhcc-CCCcEEEEEcCC---hHHHHHHHHHHHHhCCcceEEEecc
Q 014571 265 ILDMCAAPGGKTT----AIASLL-RDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLD 320 (422)
Q Consensus 265 VLD~CAgpGgKT~----~la~l~-~~~g~V~A~D~s---~~rl~~l~~~l~r~g~~nv~~~~~D 320 (422)
++ .|=.|||-. +++... +..-.++-+|.- +.-++.+++..+++|++ +..+..+
T Consensus 250 v~--vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~-i~~~~~~ 310 (479)
T PRK13794 250 VT--VAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLE-IIRTKSE 310 (479)
T ss_pred EE--EEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCc-EEEEchH
Confidence 44 344588854 333222 345677777743 56677778888888875 4444433
No 90
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.46 E-value=8e-07 Score=91.43 Aligned_cols=121 Identities=14% Similarity=0.050 Sum_probs=90.8
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC---cceEEEecchhh
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL---KCITTYKLDALK 323 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~---~nv~~~~~Da~~ 323 (422)
|.+|.+....+....+.+|||+|||+|--+..+++.. +..+|+++|.|+..++.+++|++..+. .+++++..|+..
T Consensus 214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~ 292 (378)
T PRK15001 214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS 292 (378)
T ss_pred ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence 7888888888877667899999999999999999874 568999999999999999999988764 367888777643
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc-cceecc
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV-GLRIQK 402 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~-~lr~~~ 402 (422)
.. ....||.|+++||-..... +.. . .-.++++.+. .|+.+|
T Consensus 293 ~~----------------~~~~fDlIlsNPPfh~~~~-------------~~~------~---ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 293 GV----------------EPFRFNAVLCNPPFHQQHA-------------LTD------N---VAWEMFHHARRCLKING 334 (378)
T ss_pred cC----------------CCCCEEEEEECcCcccCcc-------------CCH------H---HHHHHHHHHHHhcccCC
Confidence 11 1246999999999753222 100 1 1235666664 378888
Q ss_pred EEEe
Q 014571 403 VLVL 406 (422)
Q Consensus 403 ~~~~ 406 (422)
.+.+
T Consensus 335 ~L~i 338 (378)
T PRK15001 335 ELYI 338 (378)
T ss_pred EEEE
Confidence 8776
No 91
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.46 E-value=9.3e-07 Score=82.75 Aligned_cols=73 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.++..+...+...++.+|||++||+|.-+..+|+. ..+|+|+|+|+.+++.++++++..+++++.+.+.|...
T Consensus 17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~ 89 (197)
T PRK11207 17 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN 89 (197)
T ss_pred CChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh
Confidence 34556677778888899999999999999999986 35899999999999999999999898889988888654
No 92
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.44 E-value=9e-07 Score=80.61 Aligned_cols=85 Identities=15% Similarity=0.091 Sum_probs=70.6
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
.+..+++.++++|||+|||+|..|..+++. .++|+|+|+++.+++.+++++.. ..+++++.+|+.+....
T Consensus 5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~----- 74 (169)
T smart00650 5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP----- 74 (169)
T ss_pred HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc-----
Confidence 456678889999999999999999999987 36899999999999999998864 45799999999875321
Q ss_pred CCccccCCCCCCCCCceeecCCccc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg 357 (422)
...||.|+.++|-.-
T Consensus 75 ----------~~~~d~vi~n~Py~~ 89 (169)
T smart00650 75 ----------KLQPYKVVGNLPYNI 89 (169)
T ss_pred ----------ccCCCEEEECCCccc
Confidence 124899999999764
No 93
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=98.43 E-value=9.9e-07 Score=87.35 Aligned_cols=144 Identities=19% Similarity=0.117 Sum_probs=97.4
Q ss_pred ccceEEEeChhHHHHHHhc-CCCCCC-eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571 239 LEGEIFLQNLPSIVTAHAL-DPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv~~~L-~p~pg~-~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~ 316 (422)
.++-+.+....-.++-.++ ...... +|||+|+|+|--+..++.... ...|+|+|+|+.-++.+++|++++|+.++.+
T Consensus 86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~ 164 (280)
T COG2890 86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLV 164 (280)
T ss_pred CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEE
Confidence 4666777766666666644 222222 799999999999999998753 4799999999999999999999999877666
Q ss_pred EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc---h-hhhhhCCCCCccccccCcccchhHHHHHHHH
Q 014571 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV---P-SIAAEGLNGDKSCKEKGRTCGECGMAQEEIN 392 (422)
Q Consensus 317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~---l-~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL 392 (422)
+..|.... ..+.||.|++.||---.-. . +.++..|. ..-|.... .+. .=++|+
T Consensus 165 ~~~dlf~~-----------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~-~Al~~g~d----Gl~-~~~~i~ 221 (280)
T COG2890 165 VQSDLFEP-----------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPL-LALVGGGD----GLE-VYRRIL 221 (280)
T ss_pred Eeeecccc-----------------cCCceeEEEeCCCCCCCcccccChhhhccCHH-HHHccCcc----HHH-HHHHHH
Confidence 66654332 2347999999999987652 1 11222222 12233321 122 445677
Q ss_pred HHhcc-ceeccEEEe
Q 014571 393 ALVVG-LRIQKVLVL 406 (422)
Q Consensus 393 ~~a~~-lr~~~~~~~ 406 (422)
..+.. ++.+|++++
T Consensus 222 ~~a~~~l~~~g~l~l 236 (280)
T COG2890 222 GEAPDILKPGGVLIL 236 (280)
T ss_pred HhhHHHcCCCcEEEE
Confidence 76644 566788887
No 94
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.43 E-value=9e-07 Score=83.85 Aligned_cols=113 Identities=17% Similarity=0.107 Sum_probs=74.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
.++|.+|||+|||||+.|..+++..++.+.|+|+|+++- ....+++++++|.+..........
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~------ 111 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE------ 111 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH------
Confidence 467899999999999999999999877789999999981 134678999999876421000000
Q ss_pred CCCCCCCCCceeecC-CccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 339 NSKDNNYITSQTSDS-MKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 339 ~~~~~~~FD~VLvDa-PCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
......||.|+.|. |.- .|. | ..+.. ....+..++|+.+.. |+.+|.+++
T Consensus 112 -~~~~~~~D~V~S~~~~~~-~g~-------~------~~d~~---~~~~~~~~~L~~~~~~LkpGG~~vi 163 (209)
T PRK11188 112 -RVGDSKVQVVMSDMAPNM-SGT-------P------AVDIP---RAMYLVELALDMCRDVLAPGGSFVV 163 (209)
T ss_pred -HhCCCCCCEEecCCCCcc-CCC-------h------HHHHH---HHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 00135689999975 322 222 0 00001 111223467777765 899999998
No 95
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.42 E-value=1.4e-06 Score=92.92 Aligned_cols=126 Identities=13% Similarity=0.072 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
++.+|||+|||+|..+..++... +.++|+|+|+|+..++.+++|+++.|+. ++.++++|.....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~-------------- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI-------------- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--------------
Confidence 45799999999999999998875 3579999999999999999999999974 5899998875321
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccc--hhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCG--ECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~--~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
..+.||.|+++||-........+ .++. ..+.|...-.. +=-..=+.|++.+.. |+.+|.+++
T Consensus 203 --~~~~fDlIvsNPPYi~~~~~~~l--~~~v-~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l 267 (506)
T PRK01544 203 --EKQKFDFIVSNPPYISHSEKSEM--AIET-INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL 267 (506)
T ss_pred --cCCCccEEEECCCCCCchhhhhc--Cchh-hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 02469999999999886552111 1111 11222110000 011234567777754 799999987
No 96
>PRK10742 putative methyltransferase; Provisional
Probab=98.41 E-value=1.4e-06 Score=84.48 Aligned_cols=92 Identities=18% Similarity=0.111 Sum_probs=78.4
Q ss_pred HHHHHHhcCCCCCC--eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh------CC---cceEEEe
Q 014571 250 SIVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM------GL---KCITTYK 318 (422)
Q Consensus 250 S~lv~~~L~p~pg~--~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~------g~---~nv~~~~ 318 (422)
.+..+.++.+++|. +|||++||.|.-++.++++ .++|+++|.++.-...++++++++ +. .+++++.
T Consensus 75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~ 151 (250)
T PRK10742 75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH 151 (250)
T ss_pred ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence 46788999999999 9999999999999999998 467999999999999999999996 42 5799999
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
+|+..+.... ...||.|.+|||-...
T Consensus 152 ~da~~~L~~~--------------~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 152 ASSLTALTDI--------------TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CcHHHHHhhC--------------CCCCcEEEECCCCCCC
Confidence 9998876421 2359999999987663
No 97
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.39 E-value=2.9e-06 Score=86.37 Aligned_cols=90 Identities=14% Similarity=0.140 Sum_probs=73.3
Q ss_pred eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.|.+|.+....+......+|||++||.|..+..+++.. +..+|+++|+++.+++.+++++++.++. .+++..|....
T Consensus 181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~- 257 (342)
T PRK09489 181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD- 257 (342)
T ss_pred CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-
Confidence 37788888888876666799999999999999999874 4578999999999999999999998875 45666665321
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
..+.||.|++++|
T Consensus 258 ----------------~~~~fDlIvsNPP 270 (342)
T PRK09489 258 ----------------IKGRFDMIISNPP 270 (342)
T ss_pred ----------------cCCCccEEEECCC
Confidence 1356999999988
No 98
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.37 E-value=7.9e-07 Score=73.78 Aligned_cols=71 Identities=23% Similarity=0.171 Sum_probs=57.4
Q ss_pred EEEecCCCChhHHHHHhcc--CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571 265 ILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l~--~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~ 342 (422)
|||+|||+|..+..++... ++..+++++|+|+.+++.++++.+..+. +++++++|..+++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~--------------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS--------------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---------------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---------------
Confidence 7999999999999999987 2337999999999999999999998877 799999999886431
Q ss_pred CCCCCceee
Q 014571 343 NNYITSQTS 351 (422)
Q Consensus 343 ~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 65 ~~~~D~v~~ 73 (101)
T PF13649_consen 65 DGKFDLVVC 73 (101)
T ss_dssp SSSEEEEEE
T ss_pred CCCeeEEEE
Confidence 346899987
No 99
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.31 E-value=2.4e-06 Score=87.90 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=76.0
Q ss_pred eChhHHHHHHhcCCCCC---CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 246 QNLPSIVTAHALDPQKG---ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 246 Qd~~S~lv~~~L~p~pg---~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
-|++-.++..+.+...+ -+|||++||+|.-++.++....+..+|+++|+++..++.+++|++..++.++++++.|+.
T Consensus 26 RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~ 105 (374)
T TIGR00308 26 RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA 105 (374)
T ss_pred ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH
Confidence 35544333333333344 499999999999999999875445689999999999999999999999989999999998
Q ss_pred hhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
.+.... ...||.|.+||+=|
T Consensus 106 ~~l~~~--------------~~~fDvIdlDPfGs 125 (374)
T TIGR00308 106 NVLRYR--------------NRKFHVIDIDPFGT 125 (374)
T ss_pred HHHHHh--------------CCCCCEEEeCCCCC
Confidence 875321 24699999999843
No 100
>PLN02244 tocopherol O-methyltransferase
Probab=98.30 E-value=3.2e-06 Score=85.83 Aligned_cols=75 Identities=23% Similarity=0.237 Sum_probs=63.7
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
+++.+|||++||+|+.+.++++.. .++|+++|+++.+++.++++++..|+ +++++.++|+...+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~----------- 183 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE----------- 183 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC-----------
Confidence 688999999999999999999875 46999999999999999999999887 4699999998764321
Q ss_pred CCCCCCCCCceee
Q 014571 339 NSKDNNYITSQTS 351 (422)
Q Consensus 339 ~~~~~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 184 ----~~~FD~V~s 192 (340)
T PLN02244 184 ----DGQFDLVWS 192 (340)
T ss_pred ----CCCccEEEE
Confidence 346888876
No 101
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.27 E-value=4.4e-06 Score=82.89 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=78.9
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 326 (422)
|.+|.+...-|...++.+|||+|||-|-.+..+|+.. +..+|+-+|.+..-++..++|++..++++..++..|...
T Consensus 144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~--- 219 (300)
T COG2813 144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE--- 219 (300)
T ss_pred ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc---
Confidence 9999999999999988899999999999999999985 478999999999999999999999999887555544322
Q ss_pred ccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 327 RKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
...++||.|++.||=.
T Consensus 220 --------------~v~~kfd~IisNPPfh 235 (300)
T COG2813 220 --------------PVEGKFDLIISNPPFH 235 (300)
T ss_pred --------------cccccccEEEeCCCcc
Confidence 1134899999998854
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.26 E-value=7.7e-06 Score=64.89 Aligned_cols=102 Identities=25% Similarity=0.173 Sum_probs=75.7
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~ 343 (422)
+|+|++||+|..+..++. .+..+++++|.++..+..+++..+..+..+++++..|...... . ..
T Consensus 1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~ 64 (107)
T cd02440 1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP------E--------AD 64 (107)
T ss_pred CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc------c--------cC
Confidence 589999999999998888 3467999999999999999875555566778999988876532 0 13
Q ss_pred CCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571 344 NYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT 407 (422)
Q Consensus 344 ~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t 407 (422)
..||.|+++.+|... ...+..+++.+.. ++.+|.++++
T Consensus 65 ~~~d~i~~~~~~~~~--------------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 65 ESFDVIISDPPLHHL--------------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred CceEEEEEccceeeh--------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 458999998887653 2244455555543 6788877765
No 103
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.26 E-value=1.9e-06 Score=81.60 Aligned_cols=88 Identities=16% Similarity=0.209 Sum_probs=71.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
.....+||+++++.|--|+.+|+.+++.|+|+++|+++.+.+.+++++++.|+. +|+++.+|+..........
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~------ 116 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND------ 116 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT------
T ss_pred hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc------
Confidence 345569999999999999999999988899999999999999999999999984 6999999998865432110
Q ss_pred cCCCCCCCCCceeecCCc
Q 014571 338 CNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPC 355 (422)
...+.||.|++|+.=
T Consensus 117 ---~~~~~fD~VFiDa~K 131 (205)
T PF01596_consen 117 ---GEEGQFDFVFIDADK 131 (205)
T ss_dssp ---TTTTSEEEEEEESTG
T ss_pred ---cCCCceeEEEEcccc
Confidence 013579999999853
No 104
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.26 E-value=5.6e-06 Score=82.78 Aligned_cols=94 Identities=14% Similarity=0.117 Sum_probs=77.3
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+...|.+++|..++|+++|-||.|..|++.+++ |+|+|+|.++..++.++++++.++ .++.+++++...+.......
T Consensus 12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~- 88 (305)
T TIGR00006 12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDEL- 88 (305)
T ss_pred HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhc-
Confidence 456778899999999999999999999998865 999999999999999999988764 56899998887764322110
Q ss_pred CCccccCCCCCCCCCceeecCCcccc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
....+|.|+.|=-+|+.
T Consensus 89 ---------~~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 89 ---------LVTKIDGILVDLGVSSP 105 (305)
T ss_pred ---------CCCcccEEEEeccCCHh
Confidence 12458999999999986
No 105
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.25 E-value=5.5e-06 Score=79.12 Aligned_cols=95 Identities=20% Similarity=0.166 Sum_probs=80.1
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEe-cchhhh
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYK-LDALKA 324 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~-~Da~~~ 324 (422)
...-++...++....+.+||+++.+.|--|+.||..++..|+++++|+++++.+.+++|+++.|+.+ |+.+. +|+...
T Consensus 45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~ 124 (219)
T COG4122 45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV 124 (219)
T ss_pred hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence 3344566667777788999999999999999999999878999999999999999999999999966 78888 598876
Q ss_pred hhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 325 VRRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
.... ..+.||.|+.|+-
T Consensus 125 l~~~-------------~~~~fDliFIDad 141 (219)
T COG4122 125 LSRL-------------LDGSFDLVFIDAD 141 (219)
T ss_pred HHhc-------------cCCCccEEEEeCC
Confidence 5431 2467999999984
No 106
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.25 E-value=3.1e-06 Score=85.66 Aligned_cols=85 Identities=20% Similarity=0.123 Sum_probs=71.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
..+|++|+||.||-|-.|+.+|..- ..+|+|+|+++.-++.|++|++..++.+ |.++++|++.+....
T Consensus 186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~--------- 254 (341)
T COG2520 186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL--------- 254 (341)
T ss_pred hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---------
Confidence 3469999999999999999999984 3349999999999999999999999987 899999999876421
Q ss_pred cCCCCCCCCCceeecCCccccCc
Q 014571 338 CNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
+.||+|+.--|=+....
T Consensus 255 ------~~aDrIim~~p~~a~~f 271 (341)
T COG2520 255 ------GVADRIIMGLPKSAHEF 271 (341)
T ss_pred ------ccCCEEEeCCCCcchhh
Confidence 45899999888665433
No 107
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.24 E-value=4.8e-06 Score=83.02 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=79.7
Q ss_pred ceEEEeC-hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEe
Q 014571 241 GEIFLQN-LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYK 318 (422)
Q Consensus 241 G~~~~Qd-~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~ 318 (422)
|.-++.| ---..++..+++.++++|||++||+|..|..+++. ..+|+|+|+++..++.+++++...+ ..+++++.
T Consensus 15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~ 91 (294)
T PTZ00338 15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE 91 (294)
T ss_pred CccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence 4434433 33344666778899999999999999999999886 3589999999999999999998877 47899999
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
+|+.+... ..||.|+.+.|-.-+.-
T Consensus 92 ~Dal~~~~-----------------~~~d~VvaNlPY~Istp 116 (294)
T PTZ00338 92 GDALKTEF-----------------PYFDVCVANVPYQISSP 116 (294)
T ss_pred CCHhhhcc-----------------cccCEEEecCCcccCcH
Confidence 99976421 24799999999986654
No 108
>PRK08317 hypothetical protein; Provisional
Probab=98.23 E-value=7.2e-06 Score=77.02 Aligned_cols=71 Identities=30% Similarity=0.308 Sum_probs=59.0
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
....+.+.++.+|||+|||+|..+..+++.+++.++++++|.++.+++.++++.. ....++.+...|....
T Consensus 11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC
Confidence 3456778899999999999999999999987667899999999999999988733 2335788888887653
No 109
>PHA03411 putative methyltransferase; Provisional
Probab=98.22 E-value=6.1e-06 Score=81.31 Aligned_cols=82 Identities=15% Similarity=0.122 Sum_probs=65.8
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
+.++++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++ .++.++++|+..+..
T Consensus 60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~---------- 123 (279)
T PHA03411 60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES---------- 123 (279)
T ss_pred hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------
Confidence 4566778999999999999998887643 369999999999999988763 468889999876421
Q ss_pred ccCCCCCCCCCceeecCCccccCc
Q 014571 337 MCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
...||.|+.++|--....
T Consensus 124 ------~~kFDlIIsNPPF~~l~~ 141 (279)
T PHA03411 124 ------NEKFDVVISNPPFGKINT 141 (279)
T ss_pred ------cCCCcEEEEcCCccccCc
Confidence 246999999999987544
No 110
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.21 E-value=5.5e-06 Score=80.36 Aligned_cols=75 Identities=16% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
.++.+|||+|||+|..+..+++. ..+|+++|+|+.+++.++++++..|+ .+++++++|+......
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~----------- 108 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH----------- 108 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----------
Confidence 56789999999999999999986 36899999999999999999999987 5799999998765311
Q ss_pred CCCCCCCCCceee
Q 014571 339 NSKDNNYITSQTS 351 (422)
Q Consensus 339 ~~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 109 ---~~~~fD~V~~ 118 (255)
T PRK11036 109 ---LETPVDLILF 118 (255)
T ss_pred ---cCCCCCEEEe
Confidence 1346898886
No 111
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.21 E-value=1.2e-05 Score=79.83 Aligned_cols=88 Identities=14% Similarity=0.070 Sum_probs=64.7
Q ss_pred ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhh
Q 014571 247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK 323 (422)
Q Consensus 247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~ 323 (422)
.+...++..+++ ..+|.+|||+|||+|.-+..++.+ + ..+|+|+|+++.+++.+++|++..++.+ +.+...|...
T Consensus 143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~ 220 (288)
T TIGR00406 143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ 220 (288)
T ss_pred CHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence 345555555554 568899999999999988877764 3 4699999999999999999999988754 5555544211
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa 353 (422)
...+.||.|+++.
T Consensus 221 -----------------~~~~~fDlVvan~ 233 (288)
T TIGR00406 221 -----------------PIEGKADVIVANI 233 (288)
T ss_pred -----------------ccCCCceEEEEec
Confidence 0134699999853
No 112
>PHA03412 putative methyltransferase; Provisional
Probab=98.21 E-value=2.9e-06 Score=81.84 Aligned_cols=93 Identities=18% Similarity=0.174 Sum_probs=69.6
Q ss_pred EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC--CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320 (422)
Q Consensus 243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~--~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D 320 (422)
+.+.+.+..++.. ...+.+|||+|||+|..+..++..+. +...|+|+|+++..++.+++|. .++.++..|
T Consensus 34 fTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D 105 (241)
T PHA03412 34 FTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINAD 105 (241)
T ss_pred CCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcc
Confidence 4455555554433 33477999999999999999998753 3579999999999999999875 347788888
Q ss_pred hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571 321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359 (422)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G 359 (422)
..... ...+||.|+.+||-.-..
T Consensus 106 ~~~~~----------------~~~~FDlIIsNPPY~~~~ 128 (241)
T PHA03412 106 ALTTE----------------FDTLFDMAISNPPFGKIK 128 (241)
T ss_pred hhccc----------------ccCCccEEEECCCCCCcc
Confidence 76421 124699999999987643
No 113
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.20 E-value=5.8e-06 Score=81.66 Aligned_cols=74 Identities=22% Similarity=0.146 Sum_probs=65.6
Q ss_pred hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~ 324 (422)
.--.+...|.++||++|||++||-|+-+..+|+.. ..+|+++++|++..+.++++++..|++ +|++...|-+.+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~ 134 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF 134 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence 33456777889999999999999999999999986 479999999999999999999999997 899988886654
No 114
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.19 E-value=7.7e-06 Score=79.14 Aligned_cols=74 Identities=11% Similarity=0.116 Sum_probs=60.1
Q ss_pred EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.|...+......+.+.++.+|||++||+|..+..+++.. +.++|+++|+++.+++.++++. .++.++.+|...+
T Consensus 15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~ 88 (258)
T PRK01683 15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW 88 (258)
T ss_pred HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence 355556566667778899999999999999999999875 4579999999999999988763 5678888887643
No 115
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=98.19 E-value=5.5e-06 Score=80.19 Aligned_cols=75 Identities=20% Similarity=0.210 Sum_probs=66.7
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCC-----cEEEEEcCChHHHHHHHHHHHHhCCc---ceEEEecchhh
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----GEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDALK 323 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-----g~V~A~D~s~~rl~~l~~~l~r~g~~---nv~~~~~Da~~ 323 (422)
+.+..|+|..|.++||+|+|+|..|+.|.....++ ++|+.+|+++.++...++++++.++. ++.++.+||.+
T Consensus 91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~ 170 (296)
T KOG1540|consen 91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED 170 (296)
T ss_pred HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence 45678899999999999999999999999988764 89999999999999999999887762 38999999998
Q ss_pred hhh
Q 014571 324 AVR 326 (422)
Q Consensus 324 ~~~ 326 (422)
++.
T Consensus 171 LpF 173 (296)
T KOG1540|consen 171 LPF 173 (296)
T ss_pred CCC
Confidence 864
No 116
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.17 E-value=7.8e-06 Score=79.14 Aligned_cols=66 Identities=15% Similarity=0.225 Sum_probs=57.3
Q ss_pred CCCCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~ 324 (422)
+.++.+|||++||+|.-+..+++.+ .+.++|+++|.|+.+++.+++++++.|.. +++++++|+...
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~ 121 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI 121 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence 4578899999999999999888864 45689999999999999999999998874 699999997654
No 117
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=1.2e-05 Score=78.32 Aligned_cols=106 Identities=12% Similarity=0.123 Sum_probs=87.7
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEe
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYK 318 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~ 318 (422)
.-.+|.-|.+ ++...|+..||.+|+..+.|.|+.+..|+..+++.|+++.+|.+..|.+.+.+..++.|+ +|+.++.
T Consensus 86 TQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~h 163 (314)
T KOG2915|consen 86 TQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTH 163 (314)
T ss_pred ceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEE
Confidence 4557777764 677899999999999999999999999999999999999999999999999999999998 6788888
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
-|.-..-+ ......+|.|++|-|.--.-.
T Consensus 164 rDVc~~GF-------------~~ks~~aDaVFLDlPaPw~Ai 192 (314)
T KOG2915|consen 164 RDVCGSGF-------------LIKSLKADAVFLDLPAPWEAI 192 (314)
T ss_pred eecccCCc-------------cccccccceEEEcCCChhhhh
Confidence 77543211 111467899999998765433
No 118
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.14 E-value=1.3e-05 Score=74.95 Aligned_cols=70 Identities=16% Similarity=0.156 Sum_probs=58.0
Q ss_pred hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
.+..+...+.+.++.+|||++||+|.-+..+|+. ...|+|+|+|+.+++.++++++..|++ +.+...|..
T Consensus 18 ~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~ 87 (195)
T TIGR00477 18 THSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN 87 (195)
T ss_pred chHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch
Confidence 3444556677777789999999999999999985 369999999999999999999888875 777777754
No 119
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=4e-06 Score=87.87 Aligned_cols=114 Identities=19% Similarity=0.091 Sum_probs=88.7
Q ss_pred EEeChhHHH------HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571 244 FLQNLPSIV------TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (422)
Q Consensus 244 ~~Qd~~S~l------v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~ 317 (422)
+.|.=.|++ +..+++...+..++|+|||+|...+.+|+. .++|+++|+++.-++.++.|++..|++|.+++
T Consensus 360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi 436 (534)
T KOG2187|consen 360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFI 436 (534)
T ss_pred hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeee
Confidence 446655554 456778889999999999999999988876 47899999999999999999999999999999
Q ss_pred ecchhhhhhccCCCCCCccccCCCCCCCCC-ceeecCCccccCch--hhhhhCCCC
Q 014571 318 KLDALKAVRRKNESNDEPNMCNSKDNNYIT-SQTSDSMKLHKEVP--SIAAEGLNG 370 (422)
Q Consensus 318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD-~VLvDaPCSg~G~l--~~lrr~p~~ 370 (422)
++.+.+.....-.+.. ..-+ .+++|+|.+|.-+. ..+|+.+..
T Consensus 437 ~gqaE~~~~sl~~~~~----------~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~ 482 (534)
T KOG2187|consen 437 VGQAEDLFPSLLTPCC----------DSETLVAIIDPPRKGLHMKVIKALRAYKNP 482 (534)
T ss_pred ecchhhccchhcccCC----------CCCceEEEECCCcccccHHHHHHHHhccCc
Confidence 9977766543322210 1124 89999999997653 557777654
No 120
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.11 E-value=1.1e-05 Score=78.69 Aligned_cols=87 Identities=14% Similarity=0.055 Sum_probs=69.9
Q ss_pred hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK 328 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~ 328 (422)
.....+..+++.+|++|||+|||+|.-|..+++. ..+|+|+|+++.+++.++++++. .++++++++|+.+...
T Consensus 17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-- 89 (258)
T PRK14896 17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-- 89 (258)
T ss_pred HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc--
Confidence 3345566678889999999999999999999987 35899999999999999988765 4689999999876431
Q ss_pred CCCCCCccccCCCCCCCCCceeecCCccc
Q 014571 329 NESNDEPNMCNSKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg 357 (422)
..||.|+...|-.-
T Consensus 90 ---------------~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ---------------PEFNKVVSNLPYQI 103 (258)
T ss_pred ---------------hhceEEEEcCCccc
Confidence 12578888877654
No 121
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.10 E-value=1.1e-05 Score=78.08 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=54.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.-+...+.+.++.+|||++||+|..+..+++.. +.++|+++|+|+.+++.++++ ++.++++|+..+
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~ 84 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW 84 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC
Confidence 344566777899999999999999999999876 457999999999999988652 477888887654
No 122
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.06 E-value=2.2e-05 Score=74.12 Aligned_cols=74 Identities=24% Similarity=0.298 Sum_probs=61.8
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 324 (422)
..+...+.+.++.+|||+|||+|..+..++...+...+++++|.++.+++.+++++...+. .++.++..|+...
T Consensus 41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 3455667777899999999999999999999875468999999999999999999887655 4588888887654
No 123
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.06 E-value=1.5e-05 Score=78.01 Aligned_cols=70 Identities=19% Similarity=0.172 Sum_probs=58.1
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+...+..+.+.++.+|||++||+|+-+..++... .++|+++|+++.+++.+++++.. ..++.+...|+..
T Consensus 41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~ 110 (263)
T PTZ00098 41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK 110 (263)
T ss_pred HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc
Confidence 4455566788999999999999999999998753 46999999999999999987654 3568898888764
No 124
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.05 E-value=2.4e-05 Score=74.03 Aligned_cols=62 Identities=27% Similarity=0.234 Sum_probs=54.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~ 323 (422)
+.++.+|||+|||+|..+..++.. ..+|+|+|+++.++..+++++...+. .++.+.+.|...
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 115 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS 115 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence 567899999999999999999875 35899999999999999999988776 478898888764
No 125
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.05 E-value=2.1e-05 Score=77.92 Aligned_cols=76 Identities=25% Similarity=0.213 Sum_probs=60.7
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
.+...++.+|||++||.|.-+..+++. ..+|+|+|.|+.+++.++++++..++ ++++...|.....
T Consensus 115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~---------- 180 (287)
T PRK12335 115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS---------- 180 (287)
T ss_pred HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc----------
Confidence 333334459999999999999999885 36999999999999999999999888 7888888865421
Q ss_pred cccCCCCCCCCCceee
Q 014571 336 NMCNSKDNNYITSQTS 351 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 181 ------~~~~fD~I~~ 190 (287)
T PRK12335 181 ------IQEEYDFILS 190 (287)
T ss_pred ------ccCCccEEEE
Confidence 1356898886
No 126
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.05 E-value=1.2e-05 Score=79.05 Aligned_cols=87 Identities=20% Similarity=0.132 Sum_probs=69.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
...+..+++.+|++|||+|||+|..|..+++.. .+|+|+|+++.+++.+++++.. ++++++++|+.+.....
T Consensus 32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~-- 103 (272)
T PRK00274 32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE-- 103 (272)
T ss_pred HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH--
Confidence 345567788999999999999999999999983 3899999999999999987643 68999999998753211
Q ss_pred CCCCccccCCCCCCCCCceeecCCcccc
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
..+|.|+...|-.-+
T Consensus 104 -------------~~~~~vv~NlPY~is 118 (272)
T PRK00274 104 -------------LQPLKVVANLPYNIT 118 (272)
T ss_pred -------------cCcceEEEeCCccch
Confidence 014788888886544
No 127
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.05 E-value=1.3e-05 Score=79.11 Aligned_cols=73 Identities=19% Similarity=0.181 Sum_probs=57.5
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~ 324 (422)
-..+...++++||++|||++||-|+-+..+|+.. ..+|+++.+|+.-.+.+++++++.|+. .+++...|.+.+
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 3467778889999999999999999999999985 469999999999999999999999985 489999887654
No 128
>PLN03075 nicotianamine synthase; Provisional
Probab=98.04 E-value=2.2e-05 Score=78.20 Aligned_cols=113 Identities=10% Similarity=0.014 Sum_probs=82.6
Q ss_pred CCCeEEEecCCCChhHHHHHh-ccCCCcEEEEEcCChHHHHHHHHHHHH-hCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571 261 KGERILDMCAAPGGKTTAIAS-LLRDEGEVVAVDRSHNKVMDIQKLAAE-MGLKC-ITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~-l~~~~g~V~A~D~s~~rl~~l~~~l~r-~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
++++|+|++||||+.|..+.. ...++++++++|+++.+++.+++++++ .|+.+ |++..+|+.....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----------- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----------- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence 779999999999988776544 445779999999999999999999965 78854 9999999876321
Q ss_pred cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hh-hHHHHH
Q 014571 338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TA-LIESFL 414 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~-~~~~~~ 414 (422)
..+.||.|++++ + ..|... .+.++|++... ++.||++++ ++ -+.+|+
T Consensus 192 ----~l~~FDlVF~~A-L----------------i~~dk~---------~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~L 241 (296)
T PLN03075 192 ----SLKEYDVVFLAA-L----------------VGMDKE---------EKVKVIEHLGKHMAPGALLMLRSAHGARAFL 241 (296)
T ss_pred ----ccCCcCEEEEec-c----------------cccccc---------cHHHHHHHHHHhcCCCcEEEEecccchHhhc
Confidence 024599999961 1 123221 24567777766 899999998 43 344443
No 129
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.01 E-value=4.2e-05 Score=74.22 Aligned_cols=60 Identities=27% Similarity=0.286 Sum_probs=47.5
Q ss_pred HHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571 250 SIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (422)
Q Consensus 250 S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~ 311 (422)
+.++...+. +.+|.+|||++||+|..+..++.. + ..+|+|+|+++.+++.+++|+++.++
T Consensus 106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~ 167 (250)
T PRK00517 106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGV 167 (250)
T ss_pred HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence 333444443 568999999999999887766654 3 34799999999999999999998877
No 130
>PLN02672 methionine S-methyltransferase
Probab=98.01 E-value=2.5e-05 Score=89.46 Aligned_cols=129 Identities=12% Similarity=0.009 Sum_probs=86.7
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----------------cceEEEecchhhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----------------KCITTYKLDALKAV 325 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----------------~nv~~~~~Da~~~~ 325 (422)
|.+|||+|||+|..+..++.... .++|+|+|+|+..++.+++|+++.++ .+|+++++|.....
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence 56999999999999999998864 47999999999999999999998653 36899999986532
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCCccccCch----hhhhhC-CCCCcccccc-Cccc------chhHHHHHHHHH
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP----SIAAEG-LNGDKSCKEK-GRTC------GECGMAQEEINA 393 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l----~~lrr~-p~~~~~w~~~-~~~~------~~l~~~Q~~IL~ 393 (422)
. .....||.|+..||-...+.. ...+.+ |+. +.++.. ...+ ..=-..=++|+.
T Consensus 198 ~--------------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~-~~~~~~p~~AL~g~~~g~dGL~~yr~i~~ 262 (1082)
T PLN02672 198 R--------------DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEE-FLYSLSNYCALQGFVEDQFGLGLIARAVE 262 (1082)
T ss_pred c--------------ccCCceEEEEECCCcCCCcchhhcChhhhhccccc-cccccCccccccCCCCCCcHHHHHHHHHH
Confidence 1 011359999999998876642 112221 110 001000 0000 001113367777
Q ss_pred Hhcc-ceeccEEEe
Q 014571 394 LVVG-LRIQKVLVL 406 (422)
Q Consensus 394 ~a~~-lr~~~~~~~ 406 (422)
.+.. |+.+|.+++
T Consensus 263 ~a~~~L~pgG~l~l 276 (1082)
T PLN02672 263 EGISVIKPMGIMIF 276 (1082)
T ss_pred HHHHhccCCCEEEE
Confidence 7754 899999888
No 131
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.00 E-value=2.5e-05 Score=78.94 Aligned_cols=76 Identities=18% Similarity=0.155 Sum_probs=61.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcc
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
.+.+|.+|||++||.|..+..+++. .+.|+++|.++++++.++++++..+. .++.++++|+..++..
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~--------- 195 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE--------- 195 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---------
Confidence 4668899999999999999988864 46999999999999999988766554 5799999998765321
Q ss_pred ccCCCCCCCCCceee
Q 014571 337 MCNSKDNNYITSQTS 351 (422)
Q Consensus 337 ~~~~~~~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 196 ------~~~FD~Vi~ 204 (322)
T PLN02396 196 ------GRKFDAVLS 204 (322)
T ss_pred ------cCCCCEEEE
Confidence 246888876
No 132
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.00 E-value=2.7e-05 Score=75.81 Aligned_cols=99 Identities=15% Similarity=0.080 Sum_probs=79.2
Q ss_pred hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhh
Q 014571 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR 326 (422)
Q Consensus 248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~ 326 (422)
...++...++......+||+++.+.|--|+.+|..+++.|+|+++|.++.+.+.+++++++.|+ ++|+++.+|+.....
T Consensus 66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~ 145 (247)
T PLN02589 66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD 145 (247)
T ss_pred HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence 3345555555556677999999999999999999988889999999999999999999999997 569999999988654
Q ss_pred ccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 327 RKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
...... ...+.||.|++|+-
T Consensus 146 ~l~~~~--------~~~~~fD~iFiDad 165 (247)
T PLN02589 146 QMIEDG--------KYHGTFDFIFVDAD 165 (247)
T ss_pred HHHhcc--------ccCCcccEEEecCC
Confidence 422110 11357999999984
No 133
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.99 E-value=5.3e-06 Score=76.14 Aligned_cols=85 Identities=25% Similarity=0.215 Sum_probs=53.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
++..+.+|||+||||||.|..+++..+..++|+|+|+.+. ....++..+++|.+........ ..
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i-~~---- 83 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDI-RK---- 83 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHG-GG----
T ss_pred CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhh-hh----
Confidence 3445699999999999999999999766799999999977 2335677777777543211100 00
Q ss_pred cCCCCCCCCCceeecC--Ccccc
Q 014571 338 CNSKDNNYITSQTSDS--MKLHK 358 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDa--PCSg~ 358 (422)
........||.|++|. +|+|.
T Consensus 84 ~~~~~~~~~dlv~~D~~~~~~g~ 106 (181)
T PF01728_consen 84 LLPESGEKFDLVLSDMAPNVSGD 106 (181)
T ss_dssp SHGTTTCSESEEEE-------SS
T ss_pred hccccccCcceeccccccCCCCc
Confidence 0001135799999999 55554
No 134
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.99 E-value=2.6e-05 Score=78.51 Aligned_cols=59 Identities=20% Similarity=0.049 Sum_probs=49.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----CcceEEEecchh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDAL 322 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv~~~~~Da~ 322 (422)
+|.+|||+|||+|..+..+++. ...|+++|+|+.+++.++++++..+ ..++.+...|..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~ 207 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE 207 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence 6889999999999999999985 3589999999999999999988763 235677777753
No 135
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=97.98 E-value=3.5e-05 Score=73.95 Aligned_cols=66 Identities=12% Similarity=0.112 Sum_probs=57.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 324 (422)
+.++.+|||++||+|..+..+++... +.++|+++|+|+.+++.++++++..+. .++.++++|....
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence 35788999999999999999998753 468999999999999999999988764 4689999998764
No 136
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=97.96 E-value=2e-05 Score=76.07 Aligned_cols=73 Identities=19% Similarity=0.076 Sum_probs=58.3
Q ss_pred EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.+|...+......+...++.+|||++||+|..+..++.. ...|+++|+|+.+++.++++.. .+.++++|...
T Consensus 25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~ 96 (251)
T PRK10258 25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES 96 (251)
T ss_pred HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence 367777777778887777889999999999999888764 3689999999999998887642 24567778765
Q ss_pred h
Q 014571 324 A 324 (422)
Q Consensus 324 ~ 324 (422)
.
T Consensus 97 ~ 97 (251)
T PRK10258 97 L 97 (251)
T ss_pred C
Confidence 3
No 137
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=97.96 E-value=1.7e-05 Score=76.28 Aligned_cols=110 Identities=18% Similarity=0.176 Sum_probs=81.2
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
-+|.+|||++||-|..+..||++ ...|+|+|.+++.++.++..+.+-|+. |...+..+..+..
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~------------- 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS------------- 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh-------------
Confidence 58999999999999999999997 489999999999999999999998875 5555555544321
Q ss_pred CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhhHHHHHh
Q 014571 340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTALIESFLM 415 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~~~ 415 (422)
..+.||+|+| ..+++| -|+ - ..++++++. +|.+|.+++++.-.|+.+
T Consensus 121 --~~~~FDvV~c------mEVlEH---v~d-----------------p-~~~~~~c~~lvkP~G~lf~STinrt~ka 168 (243)
T COG2227 121 --AGGQFDVVTC------MEVLEH---VPD-----------------P-ESFLRACAKLVKPGGILFLSTINRTLKA 168 (243)
T ss_pred --cCCCccEEEE------hhHHHc---cCC-----------------H-HHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence 1368999998 233221 111 1 126776665 799999999777666543
No 138
>PRK04457 spermidine synthase; Provisional
Probab=97.94 E-value=3.6e-05 Score=75.50 Aligned_cols=80 Identities=11% Similarity=0.064 Sum_probs=65.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
..++.+|||+++|.|.-+..++... +..+|+++|+++..++.++++....+. ++++++.+|+..+....
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~--------- 133 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH--------- 133 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---------
Confidence 3456799999999999999898876 468999999999999999988754443 67999999998875321
Q ss_pred cCCCCCCCCCceeecC
Q 014571 338 CNSKDNNYITSQTSDS 353 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDa 353 (422)
...||.|++|+
T Consensus 134 -----~~~yD~I~~D~ 144 (262)
T PRK04457 134 -----RHSTDVILVDG 144 (262)
T ss_pred -----CCCCCEEEEeC
Confidence 24689999996
No 139
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.93 E-value=3.2e-05 Score=79.86 Aligned_cols=69 Identities=23% Similarity=0.143 Sum_probs=56.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
...+...+++++|++|||+|||+|+.+.++++.. ..+|+++|+|+.+++.++++++. + ++++...|...
T Consensus 156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~ 224 (383)
T PRK11705 156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRD 224 (383)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhh
Confidence 3456677888999999999999999999999875 36899999999999999998853 3 37777777543
No 140
>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase.
Probab=97.93 E-value=2.5e-05 Score=61.51 Aligned_cols=70 Identities=33% Similarity=0.584 Sum_probs=61.8
Q ss_pred EEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEE
Q 014571 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ 204 (422)
Q Consensus 125 ~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrv 204 (422)
+++|+.++++++++|+.+|.+||...+..++.||.|.|+ ..++.+++.
T Consensus 2 ~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~~~g~~V~v~--------------------------------~~~g~~vg~ 49 (77)
T smart00359 2 KVVVDDGAVKAILNGASLLAPGVVRVDGGIKEGDVVVIV--------------------------------DEKGEPLGI 49 (77)
T ss_pred EEEEchhHHHHHHcCCCcccceeEEEeCCcCCCCEEEEE--------------------------------cCCCCEEEE
Confidence 588999999999999999999999999899999999999 335789999
Q ss_pred ccCccCHHHHhcc--cCcceeecc
Q 014571 205 GTAMMSRAGIFRA--SEGIAVDMH 226 (422)
Q Consensus 205 g~a~msreel~~~--~~GiaV~~~ 226 (422)
|...++...+.+. .+|+.++..
T Consensus 50 G~~~~~s~~~~~~~~~~g~~v~~~ 73 (77)
T smart00359 50 GLANMSSEEMARIKGEKGLAVKVR 73 (77)
T ss_pred EEEeCCHHHHHHHhccCceEEEEE
Confidence 9999999888875 588888754
No 141
>PRK06202 hypothetical protein; Provisional
Probab=97.93 E-value=2.6e-05 Score=74.45 Aligned_cols=83 Identities=19% Similarity=0.119 Sum_probs=58.8
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC---CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~ 327 (422)
.+....+...++.+|||+|||+|.-+..+++... ...+|+|+|+++.+++.++++.... ++.+...|+...+.
T Consensus 50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~- 125 (232)
T PRK06202 50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA- 125 (232)
T ss_pred HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc-
Confidence 3444455556788999999999999999887543 2359999999999999998875543 34555555433221
Q ss_pred cCCCCCCccccCCCCCCCCCceee
Q 014571 328 KNESNDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 126 --------------~~~~fD~V~~ 135 (232)
T PRK06202 126 --------------EGERFDVVTS 135 (232)
T ss_pred --------------cCCCccEEEE
Confidence 1346898887
No 142
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=97.91 E-value=3.9e-05 Score=75.04 Aligned_cols=89 Identities=18% Similarity=0.136 Sum_probs=70.2
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.+..+||+|||+|..++.++..++ +++|+|+|+|+..+..+.+|++|+++.+ +.++..+...-.... +
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~----------~ 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE----------H 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc----------c
Confidence 455899999999999999999887 7999999999999999999999999865 777765543211100 1
Q ss_pred CCCCCCCCceeecCCccccCc
Q 014571 340 SKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~ 360 (422)
....+++|.++..||..-.-.
T Consensus 217 ~l~~~~~dllvsNPPYI~~dD 237 (328)
T KOG2904|consen 217 PLLEGKIDLLVSNPPYIRKDD 237 (328)
T ss_pred ccccCceeEEecCCCcccccc
Confidence 122467899999999988655
No 143
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=97.89 E-value=8.7e-05 Score=69.71 Aligned_cols=117 Identities=17% Similarity=0.159 Sum_probs=80.2
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~ 342 (422)
..+||+|||-|..++++|... ++..++|+|++..++..+.+++.+.|++|+.++++|+..+......
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~------------ 85 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP------------ 85 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST------------
T ss_pred CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc------------
Confidence 389999999999999999985 5689999999999999999999999999999999999886543211
Q ss_pred CCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhhHH
Q 014571 343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TALIE 411 (422)
Q Consensus 343 ~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~~~ 411 (422)
.+.+|.|.+-- |+-|.+-+-.+. + -.|.+.|+.... |+.+|.+-+ |++-|
T Consensus 86 ~~~v~~i~i~F--------------PDPWpK~rH~kr---R--l~~~~fl~~~~~~L~~gG~l~~~TD~~~ 137 (195)
T PF02390_consen 86 PGSVDRIYINF--------------PDPWPKKRHHKR---R--LVNPEFLELLARVLKPGGELYFATDVEE 137 (195)
T ss_dssp TTSEEEEEEES-------------------SGGGGGG---S--TTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred CCchheEEEeC--------------CCCCcccchhhh---h--cCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence 24467676643 333211111111 1 156666766655 799998888 65544
No 144
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.88 E-value=4.3e-05 Score=76.07 Aligned_cols=107 Identities=18% Similarity=0.180 Sum_probs=72.8
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhcc------CCCcEEEEEcCChHHHHHHHHHHHHhCC--
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL------RDEGEVVAVDRSHNKVMDIQKLAAEMGL-- 311 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~------~~~g~V~A~D~s~~rl~~l~~~l~r~g~-- 311 (422)
.|.+|-=..-+.+.+.++.++++++|+|.|||.|+....+...+ .....++|+|+++..+..++-|+.-.|.
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~ 104 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN 104 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence 35555445555788888899999999999999999988888754 2467999999999999999888876664
Q ss_pred cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571 312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE 359 (422)
Q Consensus 312 ~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G 359 (422)
.+..+...|+...... .....||.|+..||=...+
T Consensus 105 ~~~~i~~~d~l~~~~~-------------~~~~~~D~ii~NPPf~~~~ 139 (311)
T PF02384_consen 105 SNINIIQGDSLENDKF-------------IKNQKFDVIIGNPPFGSKE 139 (311)
T ss_dssp BGCEEEES-TTTSHSC-------------TST--EEEEEEE--CTCES
T ss_pred cccccccccccccccc-------------ccccccccccCCCCccccc
Confidence 3346777776543211 0135799999999999883
No 145
>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]
Probab=97.87 E-value=2.1e-05 Score=72.24 Aligned_cols=72 Identities=29% Similarity=0.446 Sum_probs=66.7
Q ss_pred CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI 202 (422)
Q Consensus 123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V 202 (422)
.|-+.||.+++|++.+|++|++|||+.+..+++.||.|.|. +.++.++
T Consensus 128 ~k~~~i~~~~~E~~~Ng~nV~~~gV~e~~~~i~~~d~viVv--------------------------------~~ng~~v 175 (202)
T COG5270 128 KKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVV--------------------------------SENGRVV 175 (202)
T ss_pred CccEEEEcccchhhhccCcccCCceeeccCCcccCCeEEEE--------------------------------ecCCEEE
Confidence 67888999999999999999999999999999999999999 5578899
Q ss_pred EEccCccCHHHHhcccCcceeecc
Q 014571 203 GQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 203 rvg~a~msreel~~~~~GiaV~~~ 226 (422)
++|.+.++++++....+|..+++.
T Consensus 176 GVg~a~~~~~~~in~~rG~~v~~~ 199 (202)
T COG5270 176 GVGIAKKSYEELINPERGTGVKPR 199 (202)
T ss_pred EEEEEecCHHHhcCcccCcccCCC
Confidence 999999999999988888888765
No 146
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.85 E-value=7.7e-05 Score=70.48 Aligned_cols=59 Identities=34% Similarity=0.304 Sum_probs=51.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLD 320 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~D 320 (422)
..++.+|||+|||+|..+..+++. ...|+++|.++.+++.++++....+. .++.+..+|
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d 120 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD 120 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence 357889999999999999999876 35699999999999999999988887 568888888
No 147
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.82 E-value=7.7e-05 Score=70.01 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=78.1
Q ss_pred eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
|-.-.++....|.-..-.++||++||.|-.|.+||... .+++|+|+++.-++.+++++.. .++|++.++|.....
T Consensus 28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~ 102 (201)
T PF05401_consen 28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW 102 (201)
T ss_dssp HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT--
T ss_pred HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC
Confidence 44433444445655566789999999999999999984 6899999999999999998875 478999999875431
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEE
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLV 405 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~ 405 (422)
..+.||.|++ |..+. .+.+ ...+++-|-+-+..|+.+|.||
T Consensus 103 ----------------P~~~FDLIV~----SEVlY------------YL~~-------~~~L~~~l~~l~~~L~pgG~LV 143 (201)
T PF05401_consen 103 ----------------PEGRFDLIVL----SEVLY------------YLDD-------AEDLRAALDRLVAALAPGGHLV 143 (201)
T ss_dssp -----------------SS-EEEEEE----ES-GG------------GSSS-------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred ----------------CCCCeeEEEE----ehHhH------------cCCC-------HHHHHHHHHHHHHHhCCCCEEE
Confidence 2467999987 33333 2332 1224444444445799999999
Q ss_pred e
Q 014571 406 L 406 (422)
Q Consensus 406 ~ 406 (422)
+
T Consensus 144 ~ 144 (201)
T PF05401_consen 144 F 144 (201)
T ss_dssp E
T ss_pred E
Confidence 9
No 148
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.81 E-value=0.0001 Score=70.30 Aligned_cols=84 Identities=20% Similarity=0.224 Sum_probs=65.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
.++||.+||-++||+|.--+|++...+..|.|+|+|.++...+.+-+.+++- +||.++..||+++.. ..
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~-Y~-------- 138 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEK-YR-------- 138 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGG-GT--------
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHH-hh--------
Confidence 4679999999999999999999999999999999999999999998887774 799999999997532 11
Q ss_pred cCCCCCCCCCceeecCCc
Q 014571 338 CNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPC 355 (422)
..-+..|.|++|..-
T Consensus 139 ---~lv~~VDvI~~DVaQ 153 (229)
T PF01269_consen 139 ---MLVEMVDVIFQDVAQ 153 (229)
T ss_dssp ---TTS--EEEEEEE-SS
T ss_pred ---cccccccEEEecCCC
Confidence 123467999998753
No 149
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.81 E-value=3e-05 Score=62.02 Aligned_cols=94 Identities=20% Similarity=0.139 Sum_probs=66.9
Q ss_pred EEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCC
Q 014571 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY 345 (422)
Q Consensus 266 LD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~ 345 (422)
||++||+|..+..+++. +...|+++|.++.+++.++++.+..+ +.+..+|.+.++.. .+.
T Consensus 1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~---------------~~s 60 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFP---------------DNS 60 (95)
T ss_dssp EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS----------------TT-
T ss_pred CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCccc---------------ccc
Confidence 89999999999999998 56899999999999999999776544 55888888776421 357
Q ss_pred CCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571 346 ITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL 406 (422)
Q Consensus 346 FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~ 406 (422)
||.|++ .+.+ .|. +-+.++++++.. +|.+|.++.
T Consensus 61 fD~v~~------~~~~-----------~~~----------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 61 FDVVFS------NSVL-----------HHL----------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp EEEEEE------ESHG-----------GGS----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccc------ccce-----------eec----------cCHHHHHHHHHHHcCcCeEEeC
Confidence 899986 2220 111 234566766755 799998874
No 150
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.79 E-value=8e-05 Score=78.59 Aligned_cols=71 Identities=23% Similarity=0.190 Sum_probs=57.8
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
...+..+.++++.+|||+|||+|..+..++... ..+|+|+|+|+.+++.+++++...+ .++.+.++|....
T Consensus 256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~ 326 (475)
T PLN02336 256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKK 326 (475)
T ss_pred HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccC
Confidence 345556667889999999999999999998865 4689999999999999998876433 3688999987653
No 151
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=5e-05 Score=71.74 Aligned_cols=84 Identities=21% Similarity=0.158 Sum_probs=60.8
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
.++|.+|+|+||||||-+-.+++.++.++.|+|+|+.+-+ -..+|.++++|.+...........
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~----- 106 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEA----- 106 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHH-----
Confidence 3579999999999999999999999988999999998642 135689999998864332110000
Q ss_pred CCCCCCCCCceeecCCccccCc
Q 014571 339 NSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
.....+|.|+.|.----+|+
T Consensus 107 --l~~~~~DvV~sD~ap~~~g~ 126 (205)
T COG0293 107 --LGGAPVDVVLSDMAPNTSGN 126 (205)
T ss_pred --cCCCCcceEEecCCCCcCCC
Confidence 01223699999975555555
No 152
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.77 E-value=1.6e-05 Score=79.53 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=66.8
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+...|.++++..++|++-|.||+|..|.+..++ ++|+|+|.++..++.++++++.+ -.++.++..+...+.......
T Consensus 12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~- 88 (310)
T PF01795_consen 12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKEL- 88 (310)
T ss_dssp HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHT-
T ss_pred HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHc-
Confidence 567788999999999999999999999999877 99999999999999999887766 356899988776654332211
Q ss_pred CCccccCCCCCCCCCceeecCCcccc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
.....+|.||.|--+|+.
T Consensus 89 --------~~~~~~dgiL~DLGvSS~ 106 (310)
T PF01795_consen 89 --------NGINKVDGILFDLGVSSM 106 (310)
T ss_dssp --------TTTS-EEEEEEE-S--HH
T ss_pred --------cCCCccCEEEEccccCHH
Confidence 023568999999999986
No 153
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.77 E-value=0.00012 Score=68.30 Aligned_cols=71 Identities=23% Similarity=0.227 Sum_probs=58.1
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.....+...++.+|||++||+|..+..++....+.++++++|+++..++.++++.. ...++.+..+|..+.
T Consensus 30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL 100 (223)
T ss_pred HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence 34445556689999999999999999999887544799999999999999998876 345688888888764
No 154
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.76 E-value=7.7e-05 Score=70.48 Aligned_cols=60 Identities=18% Similarity=0.132 Sum_probs=49.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
...++.+|||++||+|.-+..+++..+ ...++|+|+|+.+++.+++++ .++.+.++|+..
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~ 99 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD 99 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence 455788999999999999999988753 479999999999999998763 346677777654
No 155
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=97.76 E-value=4.2e-05 Score=76.40 Aligned_cols=93 Identities=17% Similarity=0.215 Sum_probs=65.7
Q ss_pred ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
++.+|.|...+.-.-.+++.++.++..+ .++.+|||++||+|.||..+++.+....+++++|+|+.+++.++++++.
T Consensus 34 i~~~peYy~tr~E~~il~~~~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~ 110 (301)
T TIGR03438 34 ICELPEYYPTRTEAAILERHADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA 110 (301)
T ss_pred HHCCCccccHHHHHHHHHHHHHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence 4566665433333233344444444332 4678999999999999999998875457899999999999999998876
Q ss_pred hC-CcceEEEecchhhh
Q 014571 309 MG-LKCITTYKLDALKA 324 (422)
Q Consensus 309 ~g-~~nv~~~~~Da~~~ 324 (422)
.. --+|..+++|....
T Consensus 111 ~~p~~~v~~i~gD~~~~ 127 (301)
T TIGR03438 111 DYPQLEVHGICADFTQP 127 (301)
T ss_pred hCCCceEEEEEEcccch
Confidence 43 12467788998753
No 156
>PRK05785 hypothetical protein; Provisional
Probab=97.74 E-value=6.7e-05 Score=71.90 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=51.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
++.+|||+|||+|.-+.++++.. .++|+++|.|+.+++.++++. ..+++|+...+..
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~------------- 107 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFR------------- 107 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCC-------------
Confidence 47899999999999999998875 369999999999999887631 2456777654321
Q ss_pred CCCCCCCceee
Q 014571 341 KDNNYITSQTS 351 (422)
Q Consensus 341 ~~~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 108 --d~sfD~v~~ 116 (226)
T PRK05785 108 --DKSFDVVMS 116 (226)
T ss_pred --CCCEEEEEe
Confidence 356898887
No 157
>PRK00811 spermidine synthase; Provisional
Probab=97.72 E-value=0.00019 Score=71.10 Aligned_cols=79 Identities=18% Similarity=0.159 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----CcceEEEecchhhhhhccCCCCCCc
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
.+.+|||+|+|.|+-+..+++. .+..+|+++|+++..++.+++.+..++ -++++++.+|++.+...
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~-------- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE-------- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence 4579999999999999988875 234689999999999999999987653 25699999999986532
Q ss_pred cccCCCCCCCCCceeecCC
Q 014571 336 NMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaP 354 (422)
..+.||.|++|++
T Consensus 147 ------~~~~yDvIi~D~~ 159 (283)
T PRK00811 147 ------TENSFDVIIVDST 159 (283)
T ss_pred ------CCCcccEEEECCC
Confidence 1356999999963
No 158
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=97.72 E-value=0.00017 Score=67.69 Aligned_cols=75 Identities=32% Similarity=0.251 Sum_probs=56.0
Q ss_pred EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
......|.+. .+++.-++.++||++||.|.-+.-+|++ .-.|+|+|.|+.-++.+++.+++.+++ |++.+.|...
T Consensus 14 ~~~~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~ 88 (192)
T PF03848_consen 14 GLTPTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLND 88 (192)
T ss_dssp TB----HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCC
T ss_pred CCCCCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchh
Confidence 3445566644 4566656779999999999999999998 468999999999999999999999987 8999888654
No 159
>PRK06922 hypothetical protein; Provisional
Probab=97.71 E-value=0.00013 Score=79.39 Aligned_cols=83 Identities=20% Similarity=0.220 Sum_probs=65.0
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
...++..+|.+|||++||+|.-+..+++.. +.+.|+|+|+|+.+++.+++++...+. ++.++++|+..++..+
T Consensus 411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~f----- 483 (677)
T PRK06922 411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSF----- 483 (677)
T ss_pred HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcccc-----
Confidence 445566689999999999999888888875 468999999999999999998876653 6888889987643111
Q ss_pred CccccCCCCCCCCCceee
Q 014571 334 EPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 484 --------edeSFDvVVs 493 (677)
T PRK06922 484 --------EKESVDTIVY 493 (677)
T ss_pred --------CCCCEEEEEE
Confidence 1356898885
No 160
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.70 E-value=0.00012 Score=71.04 Aligned_cols=69 Identities=19% Similarity=0.198 Sum_probs=58.2
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.++..+++.++++|||+|||+|..|..|++.. ..|+++|+++..++.+++++.. ..+++++.+|+...+
T Consensus 20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~ 88 (253)
T TIGR00755 20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD 88 (253)
T ss_pred HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence 34556678899999999999999999999985 3599999999999999987644 467999999987654
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=97.68 E-value=0.00017 Score=72.75 Aligned_cols=88 Identities=14% Similarity=0.071 Sum_probs=66.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCc-ceEEEe-cchhhhhhccCCCCCCccc
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYK-LDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~-nv~~~~-~Da~~~~~~~~~~~~~~~~ 337 (422)
++.++||+|||.|+....++.... ..+++|+|+++..++.+++|+++. ++. .|.+.. .|.........
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~-------- 184 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII-------- 184 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc--------
Confidence 578999999999999998888754 579999999999999999999998 775 477753 34433221100
Q ss_pred cCCCCCCCCCceeecCCccccCc
Q 014571 338 CNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
...+.||.|+|.||--.++.
T Consensus 185 ---~~~~~fDlivcNPPf~~s~~ 204 (321)
T PRK11727 185 ---HKNERFDATLCNPPFHASAA 204 (321)
T ss_pred ---ccCCceEEEEeCCCCcCcch
Confidence 11457999999999866543
No 162
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.65 E-value=0.00033 Score=66.62 Aligned_cols=84 Identities=20% Similarity=0.167 Sum_probs=65.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~ 330 (422)
.++...+.+.++.+|||+|||+|..+..+++. ...++++|.++..++.+++++...+. ++.+...|.......
T Consensus 38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~--- 110 (233)
T PRK05134 38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE--- 110 (233)
T ss_pred HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh---
Confidence 45555666778999999999999999888876 35799999999999999999888776 577777777654311
Q ss_pred CCCCccccCCCCCCCCCceeec
Q 014571 331 SNDEPNMCNSKDNNYITSQTSD 352 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvD 352 (422)
..+.||.|++.
T Consensus 111 -----------~~~~fD~Ii~~ 121 (233)
T PRK05134 111 -----------HPGQFDVVTCM 121 (233)
T ss_pred -----------cCCCccEEEEh
Confidence 12468999873
No 163
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.64 E-value=5.6e-05 Score=71.83 Aligned_cols=86 Identities=21% Similarity=0.094 Sum_probs=70.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
..+.|+|..||-||-|++.|.. ...|+++|+++-|+..+++|++-+|+++ |.++++|..........
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~--------- 161 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA--------- 161 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh---------
Confidence 5678999999999999999876 3589999999999999999999999955 99999998775433211
Q ss_pred CCCCCCCCceeecCCccccCc
Q 014571 340 SKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~ 360 (422)
...+.|.|+.-+|=+|.+-
T Consensus 162 --~K~~~~~vf~sppwggp~y 180 (263)
T KOG2730|consen 162 --DKIKYDCVFLSPPWGGPSY 180 (263)
T ss_pred --hhheeeeeecCCCCCCcch
Confidence 1344688889999998876
No 164
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.62 E-value=0.00035 Score=70.61 Aligned_cols=84 Identities=17% Similarity=0.101 Sum_probs=61.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhcc
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRK 328 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~ 328 (422)
...+...+.+.+|.+|||++||+|..+..++.. + ...|+++|.|+.++...+...+..+. .++.++.+|....+.
T Consensus 111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-- 186 (322)
T PRK15068 111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-- 186 (322)
T ss_pred HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--
Confidence 334455667778999999999999999999887 2 34799999999988765544444432 478899888775431
Q ss_pred CCCCCCccccCCCCCCCCCceee
Q 014571 329 NESNDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLv 351 (422)
.+.||.|++
T Consensus 187 --------------~~~FD~V~s 195 (322)
T PRK15068 187 --------------LKAFDTVFS 195 (322)
T ss_pred --------------cCCcCEEEE
Confidence 245898885
No 165
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=97.61 E-value=0.00018 Score=71.67 Aligned_cols=65 Identities=26% Similarity=0.294 Sum_probs=55.0
Q ss_pred ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
-+..+++..+|+ .++|.+|||++||+|-.+...+.+ +..+|+|+|+++.-++..++|+++.|++.
T Consensus 146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~ 212 (300)
T COG2264 146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVEL 212 (300)
T ss_pred ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence 345567777776 569999999999999888777776 46789999999999999999999999865
No 166
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=97.60 E-value=0.00025 Score=67.01 Aligned_cols=60 Identities=18% Similarity=0.186 Sum_probs=52.1
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~ 323 (422)
++|||++||.|+-+..+++..+ ...|+++|+|+..++.++++++..|+. ++.++..|...
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~ 61 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK 61 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence 4799999999999999998763 478999999999999999999998874 58888888743
No 167
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.59 E-value=0.00049 Score=66.30 Aligned_cols=115 Identities=17% Similarity=0.096 Sum_probs=86.7
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~ 342 (422)
-.+||+|||-|..++++|+.- ++--.+|+|+....+..+.+.+.+.|++|+.+++.||..+..... .
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~------------~ 116 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI------------P 116 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC------------C
Confidence 489999999999999999984 567999999999999999999999999999999999998865332 1
Q ss_pred CCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhh
Q 014571 343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TAL 409 (422)
Q Consensus 343 ~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~ 409 (422)
.+..|.|.+--|+ |.-+.+=..... +|...|+..+. |+.+|++-+ |++
T Consensus 117 ~~sl~~I~i~FPD------------PWpKkRH~KRRl-------~~~~fl~~~a~~Lk~gG~l~~aTD~ 166 (227)
T COG0220 117 DGSLDKIYINFPD------------PWPKKRHHKRRL-------TQPEFLKLYARKLKPGGVLHFATDN 166 (227)
T ss_pred CCCeeEEEEECCC------------CCCCcccccccc-------CCHHHHHHHHHHccCCCEEEEEecC
Confidence 2356777774432 221111111122 67777777655 899999999 443
No 168
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=97.59 E-value=0.00038 Score=69.33 Aligned_cols=73 Identities=14% Similarity=0.150 Sum_probs=62.3
Q ss_pred hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK 323 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~ 323 (422)
....+...++.+++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++++++.|+. +|+++.+|..+
T Consensus 137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 34556667788899999999999999999999986 4689999997 78999999999999984 59999999764
No 169
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=97.59 E-value=0.00019 Score=71.71 Aligned_cols=65 Identities=25% Similarity=0.264 Sum_probs=52.8
Q ss_pred ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
-+..+++..+|. ..+|.+|||++||+|--+...+.+ +..+|+|+|+++.-++.+++|++..|+..
T Consensus 145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~ 211 (295)
T PF06325_consen 145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED 211 (295)
T ss_dssp CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence 456667777775 578999999999999877766665 45689999999999999999999999865
No 170
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.58 E-value=0.00048 Score=68.48 Aligned_cols=95 Identities=17% Similarity=0.155 Sum_probs=79.6
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
++..|.++|+...+|.+-|-||.|-.|.+.+++.|+++|+|.++..++.+++++..++ .++.+++.....+......
T Consensus 15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~-- 91 (314)
T COG0275 15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKE-- 91 (314)
T ss_pred HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHh--
Confidence 6788999999999999999999999999999888999999999999999999999987 6788888776655432211
Q ss_pred CCccccCCCCCCCCCceeecCCcccc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
..-.++|.||+|=--|+.
T Consensus 92 --------~~i~~vDGiL~DLGVSS~ 109 (314)
T COG0275 92 --------LGIGKVDGILLDLGVSSP 109 (314)
T ss_pred --------cCCCceeEEEEeccCCcc
Confidence 113578999999887775
No 171
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.58 E-value=0.00023 Score=69.88 Aligned_cols=62 Identities=19% Similarity=0.160 Sum_probs=49.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCC--cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~--g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
+.++.+|||++||+|..+..+++..... ..|+++|+|+.+++.++++ ..++.+.++|+...+
T Consensus 83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp 146 (272)
T PRK11088 83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP 146 (272)
T ss_pred CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC
Confidence 3466789999999999999999876532 3799999999999988764 356888888887643
No 172
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming. This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.
Probab=97.58 E-value=0.00013 Score=78.38 Aligned_cols=74 Identities=18% Similarity=0.353 Sum_probs=66.9
Q ss_pred CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
.....|+|+...++.+..|-+||+|||++|+.++++||+|.|. ...+.
T Consensus 464 ~p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv--------------------------------~~~~~ 511 (540)
T TIGR00432 464 YPAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIV--------------------------------NADDE 511 (540)
T ss_pred CCceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEE--------------------------------cCCCc
Confidence 3458899999999999999999999999999999999999999 23456
Q ss_pred EEEEccCccCHHHHhcccCcceeecc
Q 014571 201 YIGQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 201 ~Vrvg~a~msreel~~~~~GiaV~~~ 226 (422)
.+++|++.|+..||.+..+|++|+..
T Consensus 512 llavGra~lsg~em~~~~~G~AVkvR 537 (540)
T TIGR00432 512 LLATGKALLCAEEMMDLNHGQAVKTR 537 (540)
T ss_pred EEEEEehhcCHHHHHhhcCceEEEEe
Confidence 88999999999999999999999864
No 173
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.57 E-value=0.00037 Score=65.62 Aligned_cols=75 Identities=19% Similarity=0.135 Sum_probs=60.4
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
..+.+|||+|||+|..+..+++. ...++++|.++.+++.+++++.+.+..++.+...|+.+.+..
T Consensus 44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------ 108 (224)
T TIGR01983 44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK------------ 108 (224)
T ss_pred CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC------------
Confidence 45889999999999999888875 246999999999999999999988876788888887765321
Q ss_pred CCCCCCCCceee
Q 014571 340 SKDNNYITSQTS 351 (422)
Q Consensus 340 ~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 109 --~~~~~D~i~~ 118 (224)
T TIGR01983 109 --GAKSFDVVTC 118 (224)
T ss_pred --CCCCccEEEe
Confidence 0245888876
No 174
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.56 E-value=8.4e-05 Score=66.50 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=62.9
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
-.|.+++|+|||.|..++..+ |.....|+++|+++..++...+|++.+.+. +.++++|-.+...
T Consensus 47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~------------- 110 (185)
T KOG3420|consen 47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL------------- 110 (185)
T ss_pred ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc-------------
Confidence 368999999999999885444 445679999999999999999999999874 6788887765421
Q ss_pred CCCCCCCCceeecCCc
Q 014571 340 SKDNNYITSQTSDSMK 355 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPC 355 (422)
..+.||.++.|+|-
T Consensus 111 --~~g~fDtaviNppF 124 (185)
T KOG3420|consen 111 --KGGIFDTAVINPPF 124 (185)
T ss_pred --cCCeEeeEEecCCC
Confidence 13679999999984
No 175
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.55 E-value=0.00018 Score=67.73 Aligned_cols=90 Identities=17% Similarity=0.090 Sum_probs=64.5
Q ss_pred EeChhHHHHHHhcCC---CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch
Q 014571 245 LQNLPSIVTAHALDP---QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p---~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da 321 (422)
+|..........+.. ..+.+|||++||+|..+.++++.. +..+++++|.++..++.+++++. .++.++.+|.
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~ 89 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA 89 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence 344444434433332 345799999999999999999985 45789999999999988887654 4688888887
Q ss_pred hhhhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
...+. ..+.||.|++...
T Consensus 90 ~~~~~---------------~~~~fD~vi~~~~ 107 (240)
T TIGR02072 90 EKLPL---------------EDSSFDLIVSNLA 107 (240)
T ss_pred hhCCC---------------CCCceeEEEEhhh
Confidence 65431 1346899987644
No 176
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00018 Score=68.35 Aligned_cols=62 Identities=18% Similarity=0.209 Sum_probs=53.6
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.+.+..+|.|++||||+-|-.+++.- +.+.|+++|.|+.|++.++++ +.++++..+|.+.+.
T Consensus 27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~ 88 (257)
T COG4106 27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWK 88 (257)
T ss_pred CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcC
Confidence 45677899999999999999999997 468999999999999998664 467899999998763
No 177
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.54 E-value=0.00026 Score=74.73 Aligned_cols=91 Identities=16% Similarity=0.146 Sum_probs=65.5
Q ss_pred eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
|......+...+.+.++.+|||++||+|..|..+++.. .+|+|+|.++.+++..++.. -..+++.++++|+....
T Consensus 22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~ 96 (475)
T PLN02336 22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD 96 (475)
T ss_pred CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc
Confidence 33334455667777788999999999999999999873 58999999999998765421 12467999999986421
Q ss_pred hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 326 RRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
... ..+.||.|++..+
T Consensus 97 ~~~-------------~~~~fD~I~~~~~ 112 (475)
T PLN02336 97 LNI-------------SDGSVDLIFSNWL 112 (475)
T ss_pred cCC-------------CCCCEEEEehhhh
Confidence 110 1356899988554
No 178
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=97.53 E-value=0.00024 Score=74.50 Aligned_cols=72 Identities=21% Similarity=0.379 Sum_probs=60.7
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.++++.+.+.+.+.||.+..+++++++.+||. +++||||+|++++++++.|.+. | +.
T Consensus 147 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~ 203 (434)
T PRK14901 147 HSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPS-LDLRINPLRTSLEEVQAALAEA---------G-------------IT 203 (434)
T ss_pred hCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHC---------C-------------Cc
Confidence 35778899999999998889999999999887 7889999999999999888644 4 44
Q ss_pred cccCCCCCcEEEEeC
Q 014571 93 ESQIPGLEYVVFVKG 107 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~ 107 (422)
..+.|.+++.+.++.
T Consensus 204 ~~~~~~~~~~~~~~~ 218 (434)
T PRK14901 204 ATPIPGLPQGLRLTG 218 (434)
T ss_pred eEECCCCCCeEEecC
Confidence 456778899998874
No 179
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.51 E-value=0.00027 Score=71.94 Aligned_cols=73 Identities=18% Similarity=0.203 Sum_probs=58.3
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.++.+|||+|||+|..+..+++..+ ...|+++|.++.+++.++++.. ..++.++.+|+...+.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~------------- 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF------------- 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC-------------
Confidence 4788999999999999999988764 4799999999999999988754 3568888888875431
Q ss_pred CCCCCCCCceee
Q 014571 340 SKDNNYITSQTS 351 (422)
Q Consensus 340 ~~~~~~FD~VLv 351 (422)
..+.||.|++
T Consensus 175 --~~~sFDvVIs 184 (340)
T PLN02490 175 --PTDYADRYVS 184 (340)
T ss_pred --CCCceeEEEE
Confidence 1346898876
No 180
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.47 E-value=0.00058 Score=70.04 Aligned_cols=88 Identities=14% Similarity=0.020 Sum_probs=71.0
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCC-------------------------------Cc-------EEEEEcCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------EG-------EVVAVDRS 295 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-------------------------------~g-------~V~A~D~s 295 (422)
..+.+.++++.++|-.||.|......|.+..+ .+ .++++|++
T Consensus 184 l~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did 263 (381)
T COG0116 184 LLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDID 263 (381)
T ss_pred HHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCC
Confidence 35556788999999999999888887766432 12 47899999
Q ss_pred hHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 296 HNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 296 ~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
+..++.++.|+++.|+. -|++.++|++.+.... +.+|.|+++||--
T Consensus 264 ~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---------------~~~gvvI~NPPYG 310 (381)
T COG0116 264 PRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---------------EEYGVVISNPPYG 310 (381)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---------------CcCCEEEeCCCcc
Confidence 99999999999999985 4999999998764321 4579999999974
No 181
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.45 E-value=7.9e-05 Score=71.47 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=67.2
Q ss_pred HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceEEEecchhhhhhccCCCC
Q 014571 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~~~~~Da~~~~~~~~~~~ 332 (422)
....|+.|++|||.|-|-|-.+...++. +..+|+.+|.+++-++.++-|==.-++ .+|+++.+|+..+...+.
T Consensus 128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~--- 202 (287)
T COG2521 128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD--- 202 (287)
T ss_pred heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC---
Confidence 4456788999999999999877666655 344999999999988776533211111 258999999998875442
Q ss_pred CCccccCCCCCCCCCceeecCCccc-cCc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLH-KEV 360 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg-~G~ 360 (422)
.+.||.|+-|||.-+ .|.
T Consensus 203 ----------D~sfDaIiHDPPRfS~Age 221 (287)
T COG2521 203 ----------DESFDAIIHDPPRFSLAGE 221 (287)
T ss_pred ----------ccccceEeeCCCccchhhh
Confidence 356999999999976 344
No 182
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.44 E-value=0.00058 Score=75.91 Aligned_cols=84 Identities=17% Similarity=0.044 Sum_probs=66.7
Q ss_pred CCCCeEEEecCCCChhHHHHHhccC-----------------------------------------CCcEEEEEcCChHH
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLR-----------------------------------------DEGEVVAVDRSHNK 298 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~-----------------------------------------~~g~V~A~D~s~~r 298 (422)
++++.++|-+||.|+.....|.... ...+|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 6789999999999988777765311 12379999999999
Q ss_pred HHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571 299 VMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 299 l~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
++.+++|++..|+.+ |.+.++|++++.... ..+.||.|+++||--
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-------------~~~~~d~IvtNPPYg 314 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL-------------PKGPTGLVISNPPYG 314 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc-------------ccCCCCEEEECCCCc
Confidence 999999999999965 899999998753211 124689999999973
No 183
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.41 E-value=0.001 Score=67.00 Aligned_cols=84 Identities=18% Similarity=0.142 Sum_probs=55.9
Q ss_pred ccceEEEeChhHHHH----HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-Ccc
Q 014571 239 LEGEIFLQNLPSIVT----AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKC 313 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv----~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~n 313 (422)
.+|+...=+..|-+. ...+++.+|.+|||++||+|..+..++.. +...|+++|.|+.++...+...+..+ ..+
T Consensus 95 l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~ 172 (314)
T TIGR00452 95 LSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKR 172 (314)
T ss_pred cccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence 345444334444432 33446788999999999999998888865 23589999999999876544333333 245
Q ss_pred eEEEecchhhh
Q 014571 314 ITTYKLDALKA 324 (422)
Q Consensus 314 v~~~~~Da~~~ 324 (422)
+.+...|....
T Consensus 173 v~~~~~~ie~l 183 (314)
T TIGR00452 173 AILEPLGIEQL 183 (314)
T ss_pred eEEEECCHHHC
Confidence 67777766543
No 184
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=97.41 E-value=0.00047 Score=72.38 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=60.9
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.++++-+.+++.+.||.+..++|++++..||. +++||||+|++++++++.|.+. | +.
T Consensus 132 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~RvN~~k~~~~~~~~~l~~~---------g-------------~~ 188 (431)
T PRK14903 132 YSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLP-TMLRVNSLAITREEVIKILAEE---------G-------------TE 188 (431)
T ss_pred hcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCC-eeEEeeCCcCCHHHHHHHHHHC---------C-------------Ce
Confidence 45677899999999999999999999999987 4899999999999999988644 3 44
Q ss_pred cccCCCCCcEEEEeC
Q 014571 93 ESQIPGLEYVVFVKG 107 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~ 107 (422)
+.++|..++.++++.
T Consensus 189 ~~~~~~~~~~~~~~~ 203 (431)
T PRK14903 189 AVPGKHSPFSLIVRK 203 (431)
T ss_pred eEECCCCCceEEEcC
Confidence 556788899988875
No 185
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.41 E-value=0.00086 Score=65.90 Aligned_cols=79 Identities=14% Similarity=0.104 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhccCCCCCCcc
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
.+.+|||+++|.|+.+..++... +..+|+++|+++..++.+++.+...+ .++++++..|++.+....
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~-------- 142 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT-------- 142 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--------
Confidence 34599999999999888887653 34689999999999999999886653 246888889998765321
Q ss_pred ccCCCCCCCCCceeecCC
Q 014571 337 MCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaP 354 (422)
.+.||.|++|++
T Consensus 143 ------~~~yDvIi~D~~ 154 (270)
T TIGR00417 143 ------ENTFDVIIVDST 154 (270)
T ss_pred ------CCCccEEEEeCC
Confidence 356999999976
No 186
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.39 E-value=0.00048 Score=67.44 Aligned_cols=101 Identities=16% Similarity=0.074 Sum_probs=78.5
Q ss_pred ceEEEeChh-HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571 241 GEIFLQNLP-SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319 (422)
Q Consensus 241 G~~~~Qd~~-S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~ 319 (422)
|.=++.|.. -.-++..+++++++.||++++|.|+-|..+++.. .+|+|+|+++..+..+++... ...|++++.+
T Consensus 9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~ 83 (259)
T COG0030 9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVING 83 (259)
T ss_pred ccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeC
Confidence 444444443 2456778889999999999999999999999984 579999999999999999766 3578999999
Q ss_pred chhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571 320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
|+.+...... ..+++|+-.-|..=+.-
T Consensus 84 DaLk~d~~~l--------------~~~~~vVaNlPY~Issp 110 (259)
T COG0030 84 DALKFDFPSL--------------AQPYKVVANLPYNISSP 110 (259)
T ss_pred chhcCcchhh--------------cCCCEEEEcCCCcccHH
Confidence 9988754210 04678888888776554
No 187
>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis]
Probab=97.38 E-value=0.00011 Score=66.40 Aligned_cols=96 Identities=26% Similarity=0.279 Sum_probs=71.4
Q ss_pred CcEEEEe-CCCCcccCC--CCCCCCCCCEEEEccccHHHHHcCCccccCceeec----cCCccCCCEEEEeeccccccCC
Q 014571 100 EYVVFVK-GSGPHTIDY--GYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMAC----SSHVEKGDVVAVSVAVEQPTLD 172 (422)
Q Consensus 100 ~~~l~~~-~~gp~~~~~--~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~----~~~~~~gd~V~v~~~l~~~~~~ 172 (422)
-+++++. ..||+-... -..-....+++-||++|-+.|++||+++-||+... .+.+++|+.|+|.+
T Consensus 66 G~~~fF~~~dg~~~PTLRllhk~p~~~~~~qvD~GAIkfvlsGAnIMcPGlts~g~~l~~~~ekd~~V~i~a-------- 137 (181)
T KOG2523|consen 66 GEVLFFCHRDGPYIPTLRLLHKYPFIFPHVQVDRGAIKFVLSGANIMCPGLTSPGAKLPPGVEKDTIVAIMA-------- 137 (181)
T ss_pred CEEEEEEecCCCccchhHHHhhCCCccceEEecCcceeeeecCCceEcccCCCCcccCCCCccCCCEEEEEe--------
Confidence 4555553 567774211 00112245788899999999999999999999864 45678888999984
Q ss_pred CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeecc
Q 014571 173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~ 226 (422)
+.+.-.+++|.++|+.+|+....+|+.++.-
T Consensus 138 -----------------------eGK~~alAiG~~~ms~kei~s~nKGiGIE~~ 168 (181)
T KOG2523|consen 138 -----------------------EGKEHALAIGLTKMSAKEIKSVNKGIGIENY 168 (181)
T ss_pred -----------------------cCchhhhhhhhhhhcHHHHHhhccCCceEEE
Confidence 4444578999999999999999999988753
No 188
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.37 E-value=0.00013 Score=73.29 Aligned_cols=91 Identities=16% Similarity=0.135 Sum_probs=72.8
Q ss_pred HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHH-------HHHHHHHHhCCcc--eEEEecc
Q 014571 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM-------DIQKLAAEMGLKC--ITTYKLD 320 (422)
Q Consensus 250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~-------~l~~~l~r~g~~n--v~~~~~D 320 (422)
|-+.+....++||+.|.|=..|+|+.-...|.. .+.|++-|++-.+++ .++.|.+.+|... +.++.+|
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D 273 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD 273 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence 445566677899999999999999987766665 589999999988887 5789999999643 7888899
Q ss_pred hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571 321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH 357 (422)
Q Consensus 321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg 357 (422)
.++.+.. ....||.|+||||.--
T Consensus 274 ~sn~~~r--------------sn~~fDaIvcDPPYGV 296 (421)
T KOG2671|consen 274 FSNPPLR--------------SNLKFDAIVCDPPYGV 296 (421)
T ss_pred ccCcchh--------------hcceeeEEEeCCCcch
Confidence 8876532 1467999999999743
No 189
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.37 E-value=0.0017 Score=65.09 Aligned_cols=87 Identities=22% Similarity=0.302 Sum_probs=61.3
Q ss_pred ccccCCCCccccccceEEEeChhHH-HHHHhcCCCCCCeEEEecCCCChhHHHH-HhccCCCcEEEEEcCChHHHHHHHH
Q 014571 227 NRIFQLPSFYDVLEGEIFLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 227 ~~~~~~p~~~~~~~G~~~~Qd~~S~-lv~~~L~p~pg~~VLD~CAgpGgKT~~l-a~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
.-.+++|..=-+.+|. .+|.++-. -+....+.++|.+||=++|||=|-.+.+ |+.| +..+|+..|.++.|++.+++
T Consensus 135 dfc~KLPd~vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 135 DFCYKLPDNVSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK 212 (354)
T ss_pred HheeeCCCCCchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence 3457777644446774 45766522 2334456889999999999996665555 5555 46899999999999998876
Q ss_pred HHHHhCCcceEEEec
Q 014571 305 LAAEMGLKCITTYKL 319 (422)
Q Consensus 305 ~l~r~g~~nv~~~~~ 319 (422)
+|.+.+.....
T Consensus 213 ----~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 213 ----FGATVTDPSSH 223 (354)
T ss_pred ----hCCeEEeeccc
Confidence 88876555444
No 190
>PLN02366 spermidine synthase
Probab=97.37 E-value=0.0013 Score=66.12 Aligned_cols=82 Identities=11% Similarity=0.117 Sum_probs=64.9
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC--C--cceEEEecchhhhhhccCCCCCCc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--L--KCITTYKLDALKAVRRKNESNDEP 335 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g--~--~nv~~~~~Da~~~~~~~~~~~~~~ 335 (422)
..+.+|||+++|.|+-+..+++. .+..+|+.+|+++..++.+++.+...+ + ++++++.+|++.+....
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~------- 161 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA------- 161 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-------
Confidence 34679999999999998888876 345689999999999999999886542 3 46999999998875321
Q ss_pred cccCCCCCCCCCceeecCCc
Q 014571 336 NMCNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPC 355 (422)
..+.||.|++|.+-
T Consensus 162 ------~~~~yDvIi~D~~d 175 (308)
T PLN02366 162 ------PEGTYDAIIVDSSD 175 (308)
T ss_pred ------cCCCCCEEEEcCCC
Confidence 13469999999753
No 191
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=97.36 E-value=4.1e-05 Score=62.94 Aligned_cols=72 Identities=18% Similarity=0.202 Sum_probs=47.3
Q ss_pred EEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCC
Q 014571 266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY 345 (422)
Q Consensus 266 LD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~ 345 (422)
||++||+|.-+..+++.. +.++++++|+|+.+++.+++++...+..+......+....... ...+.
T Consensus 1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~ 66 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-------------DPPES 66 (99)
T ss_dssp -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-------------CC---
T ss_pred CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-------------ccccc
Confidence 799999999999999986 5789999999999999999999998876655555443322110 11257
Q ss_pred CCceee
Q 014571 346 ITSQTS 351 (422)
Q Consensus 346 FD~VLv 351 (422)
||.|++
T Consensus 67 fD~V~~ 72 (99)
T PF08242_consen 67 FDLVVA 72 (99)
T ss_dssp -SEEEE
T ss_pred cceehh
Confidence 999986
No 192
>PRK03612 spermidine synthase; Provisional
Probab=97.35 E-value=0.00063 Score=73.07 Aligned_cols=82 Identities=15% Similarity=0.073 Sum_probs=63.3
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HHHh-----CCcceEEEecchhhhhhccCCCC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEM-----GLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~r~-----g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+++.+|||+++|.|.-+..+++. ++..+|+++|++++.++.++++ +... .-++++++.+|++++....
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~---- 370 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL---- 370 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence 45679999999999988888864 3336999999999999999984 3332 2256999999999865321
Q ss_pred CCccccCCCCCCCCCceeecCCcc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKL 356 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCS 356 (422)
.+.||.|++|.|-.
T Consensus 371 ----------~~~fDvIi~D~~~~ 384 (521)
T PRK03612 371 ----------AEKFDVIIVDLPDP 384 (521)
T ss_pred ----------CCCCCEEEEeCCCC
Confidence 34699999997643
No 193
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=97.33 E-value=0.00096 Score=69.86 Aligned_cols=71 Identities=14% Similarity=0.102 Sum_probs=59.1
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.++++.+.+++.+.|| +..+++++++.+||.. ++||||+|++++++++.|..+ | +.
T Consensus 141 ~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~-~~Rvn~~k~~~~~~~~~l~~~---------~-------------~~ 196 (427)
T PRK10901 141 YNHPSWLIKRLKKAYP-EQWQAILAANNQRPPM-WLRVNRRHHSRDAYLALLAEA---------G-------------IE 196 (427)
T ss_pred hcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCe-EEEEcCCCCCHHHHHHHHHhC---------C-------------Cc
Confidence 3678889999999996 5689999999999885 899999999999999988744 3 44
Q ss_pred cccCCCCCcEEEEeC
Q 014571 93 ESQIPGLEYVVFVKG 107 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~ 107 (422)
..++|..++++.++.
T Consensus 197 ~~~~~~~~~~~~~~~ 211 (427)
T PRK10901 197 AFPHAVGPDAIRLET 211 (427)
T ss_pred eeecCCCCCeEEECC
Confidence 556888999998874
No 194
>PRK01581 speE spermidine synthase; Validated
Probab=97.30 E-value=0.00083 Score=68.85 Aligned_cols=78 Identities=12% Similarity=0.001 Sum_probs=58.8
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HH---H--hCCcceEEEecchhhhhhccCCCCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AA---E--MGLKCITTYKLDALKAVRRKNESNDE 334 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~---r--~g~~nv~~~~~Da~~~~~~~~~~~~~ 334 (422)
..+||++++|.|+-+..+++. .+..+|+++|+++..++.+++. +. + +.-++++++.+|+..+...
T Consensus 151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~------- 222 (374)
T PRK01581 151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS------- 222 (374)
T ss_pred CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-------
Confidence 459999999999966666654 3457999999999999999962 21 2 2236799999999987532
Q ss_pred ccccCCCCCCCCCceeecCC
Q 014571 335 PNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 335 ~~~~~~~~~~~FD~VLvDaP 354 (422)
..+.||.|++|.|
T Consensus 223 -------~~~~YDVIIvDl~ 235 (374)
T PRK01581 223 -------PSSLYDVIIIDFP 235 (374)
T ss_pred -------cCCCccEEEEcCC
Confidence 1356999999965
No 195
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=97.30 E-value=0.0011 Score=69.25 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=68.2
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.++++.+.+++.+.|+ +..+++++++..||. +++||||+|++++++++.|.++ | +.
T Consensus 135 ~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~ 190 (426)
T TIGR00563 135 YLHPEWLVKRLQKAYP-GQWQSICEANNQRPP-MWLRINRTKHSRDEWLALLAEA---------G-------------MK 190 (426)
T ss_pred cCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCC-eEEEEcCCcCCHHHHHHHHHhc---------C-------------Cc
Confidence 3678889999999895 458899999999986 6799999999999999888654 4 44
Q ss_pred cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHH
Q 014571 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAV 136 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaV 136 (422)
+.++|..++.+.++. |..+. ..+....-.+.|...++..+
T Consensus 191 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~G~~~~Qd~~s~~~ 230 (426)
T TIGR00563 191 GFPHDLAPDAVRLET--PAAVH--ALPGFEEGWVTVQDASAQWV 230 (426)
T ss_pred eeeCCCCCCeEEECC--CCCcc--cCchhhCCeEEEECHHHHHH
Confidence 567888899988863 32221 11223445556655554444
No 196
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.25 E-value=0.0011 Score=63.59 Aligned_cols=102 Identities=17% Similarity=0.143 Sum_probs=83.6
Q ss_pred EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecch
Q 014571 243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA 321 (422)
Q Consensus 243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da 321 (422)
..+-+.-.++...++..-.+.++||++.=+|--++..|..+...|+|+|+|+++.-.+...+..+..|+ +.|.++.+++
T Consensus 55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a 134 (237)
T KOG1663|consen 55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA 134 (237)
T ss_pred eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence 344455667787788777889999999999999999999999999999999999999999999999997 5699999988
Q ss_pred hhhhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571 322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa 353 (422)
.......-.. ...+.||.+++|+
T Consensus 135 ~esLd~l~~~---------~~~~tfDfaFvDa 157 (237)
T KOG1663|consen 135 LESLDELLAD---------GESGTFDFAFVDA 157 (237)
T ss_pred hhhHHHHHhc---------CCCCceeEEEEcc
Confidence 7655432211 1256799999986
No 197
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.25 E-value=0.00055 Score=63.58 Aligned_cols=61 Identities=25% Similarity=0.274 Sum_probs=54.4
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~ 324 (422)
.+|||++||.|..-..+++- +=++.++++|.|++.++.++..+++-|++| |++.+.|.+..
T Consensus 69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~ 130 (227)
T KOG1271|consen 69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP 130 (227)
T ss_pred cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence 49999999999998888876 235779999999999999999999999988 99999998764
No 198
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=97.24 E-value=0.00048 Score=70.95 Aligned_cols=64 Identities=28% Similarity=0.462 Sum_probs=58.1
Q ss_pred CCCCEEEEccccHHHH-HcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCc
Q 014571 121 KPPKEVIVSRKCAEAV-LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSG 199 (422)
Q Consensus 121 ~~~k~ViVd~~~~eaV-lrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~ 199 (422)
.....|+||.+|++|+ .+||.+++|||+..+..|++||.|.|+ .+.+
T Consensus 278 ~~~g~i~vd~gA~~al~~~g~sLl~~Gi~~v~g~f~~gd~V~i~--------------------------------~~~g 325 (372)
T PRK05429 278 QPAGEIVVDAGAVKALLERGKSLLPAGVTAVEGDFSRGDVVRIV--------------------------------DPDG 325 (372)
T ss_pred CCCCeEEECccHHHHHHhcCCccCccchhheECcccCCCEEEEE--------------------------------CCCC
Confidence 3567899999999999 889999999999999999999999999 3457
Q ss_pred eEEEEccCccCHHHHhc
Q 014571 200 LYIGQGTAMMSRAGIFR 216 (422)
Q Consensus 200 v~Vrvg~a~msreel~~ 216 (422)
..|+.|.+.++.+++.+
T Consensus 326 ~~va~G~~~~~s~e~~~ 342 (372)
T PRK05429 326 REIARGLVNYSSDELRR 342 (372)
T ss_pred CEEEEEEecCCHHHHHH
Confidence 78999999999999875
No 199
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.22 E-value=0.00099 Score=62.39 Aligned_cols=71 Identities=13% Similarity=0.126 Sum_probs=53.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
++||.+|||++||.|..-.++.+. .+...+++|+++.++....++ | +.++++|...-...+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f---------- 71 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADF---------- 71 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhC----------
Confidence 467999999999999888777775 357899999999998766652 4 568889887643221
Q ss_pred CCCCCCCCCceee
Q 014571 339 NSKDNNYITSQTS 351 (422)
Q Consensus 339 ~~~~~~~FD~VLv 351 (422)
....||.|++
T Consensus 72 ---~d~sFD~VIl 81 (193)
T PF07021_consen 72 ---PDQSFDYVIL 81 (193)
T ss_pred ---CCCCccEEeh
Confidence 1456898887
No 200
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.18 E-value=0.00072 Score=68.60 Aligned_cols=78 Identities=22% Similarity=0.212 Sum_probs=58.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
+.+|.++||++|+|||.|-.+++. .++|+|+|..+ +...+. .-.+|+....|+......
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~----------- 267 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP----------- 267 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC-----------
Confidence 578999999999999999999987 46999999543 223322 235688888888664321
Q ss_pred CCCCCCCCCceeecCCccccCch
Q 014571 339 NSKDNNYITSQTSDSMKLHKEVP 361 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCSg~G~l 361 (422)
...+|.++||.-|.-..+.
T Consensus 268 ----~~~vDwvVcDmve~P~rva 286 (357)
T PRK11760 268 ----RKNVDWLVCDMVEKPARVA 286 (357)
T ss_pred ----CCCCCEEEEecccCHHHHH
Confidence 2458999999999887664
No 201
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.15 E-value=0.0027 Score=68.00 Aligned_cols=119 Identities=15% Similarity=0.076 Sum_probs=84.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
.+..+||+|||-|+.++++|... ++..++|+|++...+..+.+.+++.|++|+.++..|+..+....
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~------------ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL------------ 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc------------
Confidence 57789999999999999999985 45799999999999999999999999999999998876543221
Q ss_pred CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhhHHH
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TALIES 412 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~~~~ 412 (422)
..+.+|.|.+- -|+-|.+-+ +.+ +++ .|.+.|+.... |+.+|.+-+ |++-+=
T Consensus 414 -~~~sv~~i~i~--------------FPDPWpKkr--h~k-rRl--~~~~fl~~~~~~Lk~gG~i~~~TD~~~y 467 (506)
T PRK01544 414 -PNNSLDGIYIL--------------FPDPWIKNK--QKK-KRI--FNKERLKILQDKLKDNGNLVFASDIENY 467 (506)
T ss_pred -CcccccEEEEE--------------CCCCCCCCC--Ccc-ccc--cCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence 12446777763 344431111 111 111 45566665544 788998887 765543
No 202
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.14 E-value=0.0016 Score=60.47 Aligned_cols=55 Identities=13% Similarity=0.175 Sum_probs=43.4
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+++.+|||++||+|..+..+++.. ...++++|.++.+++.+++ .+++++++|+..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~ 66 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDE 66 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhh
Confidence 478899999999999998887653 3468999999998887754 246777788654
No 203
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.11 E-value=0.0017 Score=61.30 Aligned_cols=83 Identities=19% Similarity=0.239 Sum_probs=68.0
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
.+++|++||=++|+.|.-.+|++...+ .|.|+|+|.++...+.+-..+++ -+||.++..||+++.. ..
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~-Y~-------- 140 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEK-YR-------- 140 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHH-hh--------
Confidence 367999999999999999999999987 89999999999999998888877 4789999999997532 11
Q ss_pred cCCCCCCCCCceeecCCc
Q 014571 338 CNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaPC 355 (422)
..-+..|+|..|.--
T Consensus 141 ---~~Ve~VDviy~DVAQ 155 (231)
T COG1889 141 ---HLVEKVDVIYQDVAQ 155 (231)
T ss_pred ---hhcccccEEEEecCC
Confidence 122446888888643
No 204
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=97.09 E-value=0.0018 Score=61.59 Aligned_cols=62 Identities=15% Similarity=0.053 Sum_probs=47.3
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH------------HhCCcceEEEecchhhh
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA------------EMGLKCITTYKLDALKA 324 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~------------r~g~~nv~~~~~Da~~~ 324 (422)
.+|.+|||++||.|.-+..+|+. .-.|+|+|+|+..++.+.+... +..-.+|+++++|...+
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~ 106 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL 106 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence 57889999999999999999986 4589999999999997643211 01113578888887664
No 205
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.01 E-value=0.0015 Score=64.12 Aligned_cols=115 Identities=15% Similarity=0.060 Sum_probs=74.2
Q ss_pred CCCCeEEEecCCCChh----HHHHHhccCC----CcEEEEEcCChHHHHHHHHHHH---H-hCC----------------
Q 014571 260 QKGERILDMCAAPGGK----TTAIASLLRD----EGEVVAVDRSHNKVMDIQKLAA---E-MGL---------------- 311 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgK----T~~la~l~~~----~g~V~A~D~s~~rl~~l~~~l~---r-~g~---------------- 311 (422)
.++.+|||++||+|.- +..+++.... ..+|+|+|+|+.+++.+++.+- . -++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~ 177 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY 177 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence 4567999999999974 4445554432 4799999999999999987531 0 011
Q ss_pred -------cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchh
Q 014571 312 -------KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGEC 384 (422)
Q Consensus 312 -------~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l 384 (422)
.+|.+.++|....+. ..+.||.|+| ...-. .|.
T Consensus 178 ~v~~~ir~~V~F~~~dl~~~~~---------------~~~~fD~I~c----rnvl~------------yf~--------- 217 (264)
T smart00138 178 RVKPELKERVRFAKHNLLAESP---------------PLGDFDLIFC----RNVLI------------YFD--------- 217 (264)
T ss_pred EEChHHhCcCEEeeccCCCCCC---------------ccCCCCEEEe----chhHH------------hCC---------
Confidence 246777777654321 1356999986 21111 111
Q ss_pred HHHHHHHHHHhcc-ceeccEEEehhhHHHHHh
Q 014571 385 GMAQEEINALVVG-LRIQKVLVLTALIESFLM 415 (422)
Q Consensus 385 ~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~~~ 415 (422)
.+.|.+++++... |+.||.|++ .|.|+++-
T Consensus 218 ~~~~~~~l~~l~~~L~pGG~L~l-g~~E~~~~ 248 (264)
T smart00138 218 EPTQRKLLNRFAEALKPGGYLFL-GHSESLPG 248 (264)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEE-ECcccCCC
Confidence 1356677777755 899999887 56677654
No 206
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=97.01 E-value=0.00071 Score=63.08 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=55.1
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 326 (422)
+.+.|++||+|-.+...|.. .-+|+|+++++++...+++|+.--|..|++++.+|++....
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f 94 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF 94 (252)
T ss_pred hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence 78999999999998887776 35899999999999999999988899999999999987654
No 207
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=97.00 E-value=0.00059 Score=64.88 Aligned_cols=99 Identities=16% Similarity=0.060 Sum_probs=68.5
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+.+.|.|.+|...+||.-|.||.|..|.+.- +..+++|+|+++-.-+.++...+.+=-+.++.+.+...+...-...
T Consensus 35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~-- 111 (303)
T KOG2782|consen 35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIAD-- 111 (303)
T ss_pred HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHH--
Confidence 6788999999999999999999999999984 5689999999987666655554333222233333332222211111
Q ss_pred CCccccCCCCCCCCCceeecCCccccCc
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
.......||.||.|--||+...
T Consensus 112 ------~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 112 ------TGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred ------hCCCcCCcceEEeecCcccccc
Confidence 1123567999999999999743
No 208
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.97 E-value=0.0065 Score=61.76 Aligned_cols=114 Identities=13% Similarity=0.123 Sum_probs=67.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----------cceEEEecchhhhhhccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----------KCITTYKLDALKAVRRKNE 330 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----------~nv~~~~~Da~~~~~~~~~ 330 (422)
++.+|||||||-||=..-.... +-+.++++|++..-++.++++.+.+.- -...++.+|..........
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~ 139 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL 139 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence 8899999999999977766654 468999999999999999998844321 1245566665432211100
Q ss_pred CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571 331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA 408 (422)
Q Consensus 331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~ 408 (422)
. .....||.|=| .-+. ... -+--+.-+.+|+++.. |+.||+.+-|.
T Consensus 140 ~---------~~~~~FDvVSc-----QFal----------------HY~--Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 140 P---------PRSRKFDVVSC-----QFAL----------------HYA--FESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp S---------STTS-EEEEEE-----ES-G----------------GGG--GSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred c---------ccCCCcceeeh-----HHHH----------------HHh--cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 0 01245666544 1111 111 0111233568998865 99999999864
No 209
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.90 E-value=0.0032 Score=54.97 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=49.9
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da 321 (422)
+|||++|+.|..+..+++.. +.++|+++|.++...+.++++++..++.++.++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al 57 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV 57 (143)
T ss_pred CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence 48999999999999998874 5579999999999999999999999888888777654
No 210
>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed
Probab=96.88 E-value=0.002 Score=64.65 Aligned_cols=73 Identities=32% Similarity=0.586 Sum_probs=64.5
Q ss_pred CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~ 201 (422)
+.+.|+|+..+++++++|+.++.||+..++..++.||.|.++. ..+.+
T Consensus 224 ~LP~V~Lde~aa~~I~nG~~L~~~gi~~~~~~~~~gd~V~I~~--------------------------------~~G~~ 271 (300)
T PRK04270 224 HLPKIIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVFT--------------------------------LKGEL 271 (300)
T ss_pred hCCceEECHHHHHHHHcCCccccCCceecccccCCCCEEEEEe--------------------------------CCCcE
Confidence 4578999999999999999999999998887788899888882 24679
Q ss_pred EEEccCccCHHHHhcccCcceeecc
Q 014571 202 IGQGTAMMSRAGIFRASEGIAVDMH 226 (422)
Q Consensus 202 Vrvg~a~msreel~~~~~GiaV~~~ 226 (422)
+++|.+.++++++.+..+|++++..
T Consensus 272 LAIG~~~~ss~el~~~~kG~~vk~~ 296 (300)
T PRK04270 272 VALGKALMDSDEILKAEKGIVVDLE 296 (300)
T ss_pred EEEEEEccCHHHHHhcCCceEEEEE
Confidence 9999999999999999999999864
No 211
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=96.88 E-value=0.0032 Score=66.18 Aligned_cols=96 Identities=19% Similarity=0.202 Sum_probs=70.0
Q ss_pred cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571 13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS 92 (422)
Q Consensus 13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (422)
.++++-+.+++.+.||.+..+++++++..||.. ++||||+|++++++.+.|.+. | +.
T Consensus 147 ~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~-~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~ 203 (444)
T PRK14902 147 YSHPVWLVKRWIDQYGEEKAEKILESLNEPPKA-SIRVNTLKISVEELIEKLEEE---------G-------------YE 203 (444)
T ss_pred hCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCe-EEEEcCCCCCHHHHHHHHHHc---------C-------------ce
Confidence 357888999999999998899999999988865 899999999999998877644 3 44
Q ss_pred cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHH
Q 014571 93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAV 136 (422)
Q Consensus 93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaV 136 (422)
+.++|..++.+.++. ++.. ..+....-.+.+....+..+
T Consensus 204 ~~~~~~~~~~~~~~~-~~~~----~~~~~~~G~~~~qd~~s~lv 242 (444)
T PRK14902 204 VEESLLSPEALVIEK-GNIA----GTDLFKDGLITIQDESSMLV 242 (444)
T ss_pred eEEcCCCCCeEEEeC-CCcc----cChHHhCceEEEEChHHHHH
Confidence 566788999999875 3221 11222344555555554444
No 212
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.87 E-value=0.0042 Score=57.96 Aligned_cols=76 Identities=17% Similarity=0.198 Sum_probs=60.6
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~ 343 (422)
+++|+++|.|-=...+|-.. +..+++-+|.+.+|+..+++-.+.+|++|+++++.++... ...
T Consensus 51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----------------~~~ 113 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----------------EYR 113 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----------------TTT
T ss_pred eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----------------ccC
Confidence 89999999998888888765 5689999999999999999999999999999999988761 014
Q ss_pred CCCCceeecCCcc
Q 014571 344 NYITSQTSDSMKL 356 (422)
Q Consensus 344 ~~FD~VLvDaPCS 356 (422)
..||.|..=|=++
T Consensus 114 ~~fd~v~aRAv~~ 126 (184)
T PF02527_consen 114 ESFDVVTARAVAP 126 (184)
T ss_dssp T-EEEEEEESSSS
T ss_pred CCccEEEeehhcC
Confidence 5688888755443
No 213
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.86 E-value=0.0019 Score=62.41 Aligned_cols=88 Identities=25% Similarity=0.228 Sum_probs=59.2
Q ss_pred HHHHHHhcCCCCCC--eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----C-----cceEEEe
Q 014571 250 SIVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----L-----KCITTYK 318 (422)
Q Consensus 250 S~lv~~~L~p~pg~--~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~-----~nv~~~~ 318 (422)
....+.+..+++|. +|||++||-|.=++.+|.+ .++|+++|.|+-....++.-++++. . .+|+++.
T Consensus 62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~ 138 (234)
T PF04445_consen 62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH 138 (234)
T ss_dssp GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence 34677788888875 8999999999999999976 3689999999998888887776642 1 3589999
Q ss_pred cchhhhhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
+|+..+... ....||+|.+||-
T Consensus 139 ~d~~~~L~~--------------~~~s~DVVY~DPM 160 (234)
T PF04445_consen 139 GDALEYLRQ--------------PDNSFDVVYFDPM 160 (234)
T ss_dssp S-CCCHCCC--------------HSS--SEEEE--S
T ss_pred CCHHHHHhh--------------cCCCCCEEEECCC
Confidence 999876531 1356899999983
No 214
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=96.86 E-value=0.0026 Score=68.23 Aligned_cols=90 Identities=16% Similarity=0.141 Sum_probs=64.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-------CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-------~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
.+.+|||.|||.|+....++..+.. .-.++++|+++..+..++.++..++.-.+.+...|........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~----- 105 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN----- 105 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc-----
Confidence 3458999999999999999876531 2578999999999999999998877333555655544321100
Q ss_pred CccccCCCCCCCCCceeecCCccccCc
Q 014571 334 EPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
.....+.||.|+..||-.....
T Consensus 106 -----~~~~~~~fD~IIgNPPy~~~k~ 127 (524)
T TIGR02987 106 -----IESYLDLFDIVITNPPYGRLKP 127 (524)
T ss_pred -----cccccCcccEEEeCCCccccCc
Confidence 0011357999999999987654
No 215
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.83 E-value=0.0032 Score=61.60 Aligned_cols=71 Identities=21% Similarity=0.205 Sum_probs=60.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~ 326 (422)
.-++..+++.++..|||+++|+|..|..|++.. ..|+++|+++..++.++++.. .-++++++.+|+.++..
T Consensus 20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~ 90 (262)
T PF00398_consen 20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDL 90 (262)
T ss_dssp HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCG
T ss_pred HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcccc
Confidence 345667788999999999999999999999884 689999999999999998655 35789999999987654
No 216
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=96.79 E-value=0.0046 Score=54.36 Aligned_cols=50 Identities=26% Similarity=0.260 Sum_probs=40.9
Q ss_pred hHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH
Q 014571 249 PSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301 (422)
Q Consensus 249 ~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~ 301 (422)
.+.++..++. ..++.+|||++||.|..+..++.. ..+++++|+++..++.
T Consensus 9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK 59 (161)
T ss_dssp HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence 3455555665 578899999999999999999776 2399999999999988
No 217
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=96.79 E-value=0.0032 Score=59.71 Aligned_cols=95 Identities=16% Similarity=0.099 Sum_probs=74.5
Q ss_pred eChhHHHH--HHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEE-EEEcCChHHHHHHHHHHHHhC----------
Q 014571 246 QNLPSIVT--AHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMG---------- 310 (422)
Q Consensus 246 Qd~~S~lv--~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V-~A~D~s~~rl~~l~~~l~r~g---------- 310 (422)
-++++|.+ ...|+ ++||.++||+++|+|-.|+.++.+++..|.+ +++|..+.-++..++|+++.-
T Consensus 63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~ 142 (237)
T KOG1661|consen 63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK 142 (237)
T ss_pred EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence 35566643 45677 8999999999999999999999888877775 999999999999999998754
Q ss_pred CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571 311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK 355 (422)
Q Consensus 311 ~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC 355 (422)
..++.++.+|.++... ..+.||+|-|-|--
T Consensus 143 ~~~l~ivvGDgr~g~~---------------e~a~YDaIhvGAaa 172 (237)
T KOG1661|consen 143 RGELSIVVGDGRKGYA---------------EQAPYDAIHVGAAA 172 (237)
T ss_pred cCceEEEeCCccccCC---------------ccCCcceEEEccCc
Confidence 1347788889886421 24568999995433
No 218
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=96.78 E-value=0.0046 Score=60.77 Aligned_cols=83 Identities=19% Similarity=0.157 Sum_probs=63.1
Q ss_pred cceEEEeChh-HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEE
Q 014571 240 EGEIFLQNLP-SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTY 317 (422)
Q Consensus 240 ~G~~~~Qd~~-S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~ 317 (422)
-|..++-++- -+-.+.-.+.+|++.||+++-|||+-|..|.+. ..+|+|+|+++.++..+.++.+..-. ...+++
T Consensus 36 ~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~ 112 (315)
T KOG0820|consen 36 FGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL 112 (315)
T ss_pred cchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence 3445555521 112334456889999999999999999999987 46899999999999999998766544 348899
Q ss_pred ecchhhhh
Q 014571 318 KLDALKAV 325 (422)
Q Consensus 318 ~~Da~~~~ 325 (422)
.+|..+..
T Consensus 113 ~gD~lK~d 120 (315)
T KOG0820|consen 113 HGDFLKTD 120 (315)
T ss_pred ecccccCC
Confidence 99987653
No 219
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=96.78 E-value=0.0094 Score=59.23 Aligned_cols=85 Identities=24% Similarity=0.213 Sum_probs=63.8
Q ss_pred cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcce-EEE
Q 014571 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTY 317 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv-~~~ 317 (422)
.-+..+|.+=.+.+..+-.-...-+|||+|||+|..-+-+...... .-.|.-.|.++.-++..++.++..|+.++ ++.
T Consensus 114 ~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~ 193 (311)
T PF12147_consen 114 QRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFE 193 (311)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEE
Confidence 3333444443333333333345568999999999998887776543 46899999999999999999999999887 999
Q ss_pred ecchhhh
Q 014571 318 KLDALKA 324 (422)
Q Consensus 318 ~~Da~~~ 324 (422)
++|+...
T Consensus 194 ~~dAfd~ 200 (311)
T PF12147_consen 194 QGDAFDR 200 (311)
T ss_pred ecCCCCH
Confidence 9998764
No 220
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=96.78 E-value=0.0012 Score=63.58 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=36.8
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH-HHHH
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD-IQKL 305 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~-l~~~ 305 (422)
.+|.+|||++||||+.|..+++. +..+|+|+|.++.++.. ++++
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~ 118 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD 118 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence 46889999999999999999986 35789999999987764 4444
No 221
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=96.74 E-value=0.0071 Score=57.81 Aligned_cols=64 Identities=20% Similarity=0.080 Sum_probs=48.2
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH------------HhCCcceEEEecchhhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA------------EMGLKCITTYKLDALKA 324 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~------------r~g~~nv~~~~~Da~~~ 324 (422)
.+.++.+|||.+||.|.-+..+|+. .-.|+|+|+|+.-++.+.+... +....+|++.++|...+
T Consensus 34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l 109 (218)
T PRK13255 34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL 109 (218)
T ss_pred CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence 4567889999999999999999985 4589999999999997642110 11123577888887765
No 222
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=96.69 E-value=0.0026 Score=65.35 Aligned_cols=63 Identities=25% Similarity=0.468 Sum_probs=56.5
Q ss_pred CCCEEEEccccHHHHHc-CCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 122 PPKEVIVSRKCAEAVLR-GAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlr-GA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
..-.|+||.+|.+|+.+ |+.++++||+....+|++||.|.|. .+.+.
T Consensus 271 ~~G~i~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~v~i~--------------------------------~~~~~ 318 (363)
T TIGR01027 271 PAGEITVDAGAEEALLERGKSLLPAGIVGVEGNFSRGEVVEIL--------------------------------NPEGQ 318 (363)
T ss_pred cCCeEEEChhHHHHHHhcCCccCCccceeeECcccCCCEEEEE--------------------------------CCCCC
Confidence 45689999999999986 8999999999999999999999999 34577
Q ss_pred EEEEccCccCHHHHhc
Q 014571 201 YIGQGTAMMSRAGIFR 216 (422)
Q Consensus 201 ~Vrvg~a~msreel~~ 216 (422)
.|+.|.+..+.+++.+
T Consensus 319 ~ia~g~~~y~s~~~~~ 334 (363)
T TIGR01027 319 DIGRGLVNYSSDELEK 334 (363)
T ss_pred EEEEEEecCCHHHHHH
Confidence 8999999999998864
No 223
>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.69 E-value=0.005 Score=55.04 Aligned_cols=75 Identities=27% Similarity=0.395 Sum_probs=67.7
Q ss_pred CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
.+.-.|+|.+.+++.+-.|-+||+.=|+.+++++++||+|.|. .+...
T Consensus 78 ~P~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVV--------------------------------ne~d~ 125 (155)
T COG1370 78 FPRMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVV--------------------------------NEDDE 125 (155)
T ss_pred CCceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEE--------------------------------CCCCc
Confidence 3455899999999999999999999999999999999999999 34678
Q ss_pred EEEEccCccCHHHHhcccCcceeeccc
Q 014571 201 YIGQGTAMMSRAGIFRASEGIAVDMHN 227 (422)
Q Consensus 201 ~Vrvg~a~msreel~~~~~GiaV~~~~ 227 (422)
.+++|++.+|..+|..-..|++|+...
T Consensus 126 LlAvGra~ls~~E~~~~~~G~AVkVr~ 152 (155)
T COG1370 126 LLAVGRALLSGAEMREFERGMAVKVRE 152 (155)
T ss_pred EEEeeeEeecHHHHhhccccEEEEEec
Confidence 899999999999999889999998654
No 224
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.69 E-value=0.0027 Score=62.69 Aligned_cols=76 Identities=14% Similarity=0.006 Sum_probs=56.9
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~ 343 (422)
+|+|+|||.||-+..+.+. + --.|+|+|+++..++..++|.... ++..|.++..... ..
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~-------------~~ 60 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKD-------------FI 60 (275)
T ss_pred cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhh-------------cC
Confidence 6899999999998888765 2 347899999999999999875321 4556766543210 02
Q ss_pred CCCCceeecCCccccCc
Q 014571 344 NYITSQTSDSMKLHKEV 360 (422)
Q Consensus 344 ~~FD~VLvDaPCSg~G~ 360 (422)
..+|.++.++||.+-..
T Consensus 61 ~~~D~l~~gpPCq~fS~ 77 (275)
T cd00315 61 PDIDLLTGGFPCQPFSI 77 (275)
T ss_pred CCCCEEEeCCCChhhhH
Confidence 35899999999998766
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.68 E-value=0.008 Score=57.47 Aligned_cols=83 Identities=17% Similarity=0.200 Sum_probs=68.0
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
+.+|+|+++|+|-=...+| .+.++.+|+-+|...+|+.-+++..+.+|++|++++++.+..+....
T Consensus 68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~------------- 133 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK------------- 133 (215)
T ss_pred CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc-------------
Confidence 6899999999999888888 44567789999999999999999999999999999998887653110
Q ss_pred CCCCCCceeecCCccccCc
Q 014571 342 DNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg~G~ 360 (422)
.. ||.|..=|=++-.-.
T Consensus 134 -~~-~D~vtsRAva~L~~l 150 (215)
T COG0357 134 -KQ-YDVVTSRAVASLNVL 150 (215)
T ss_pred -cc-CcEEEeehccchHHH
Confidence 11 898888776665544
No 226
>TIGR00425 CBF5 rRNA pseudouridine synthase, putative. This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.
Probab=96.67 E-value=0.0031 Score=63.78 Aligned_cols=74 Identities=32% Similarity=0.489 Sum_probs=64.5
Q ss_pred CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY 201 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~ 201 (422)
+.+.|+|+..+++.+++|+.++.||+..++..++.|+.|.++. ..+.+
T Consensus 236 ~lP~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~~--------------------------------~~G~~ 283 (322)
T TIGR00425 236 HLKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVIT--------------------------------LKGEA 283 (322)
T ss_pred hCCceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEEE--------------------------------CCCEE
Confidence 4678899999999999999999999998887778888888872 24679
Q ss_pred EEEccCccCHHHHhcccCcceeeccc
Q 014571 202 IGQGTAMMSRAGIFRASEGIAVDMHN 227 (422)
Q Consensus 202 Vrvg~a~msreel~~~~~GiaV~~~~ 227 (422)
+++|.+.++.+++....+|++|+...
T Consensus 284 LAIGea~~s~~ei~~~~kG~vV~~~~ 309 (322)
T TIGR00425 284 VAVGIALMSTKDIANADKGVVADVKR 309 (322)
T ss_pred EEEEEEecCHHHHhhcCCcEEEEEEE
Confidence 99999999999999988999998764
No 227
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=96.63 E-value=0.0035 Score=60.71 Aligned_cols=138 Identities=15% Similarity=0.061 Sum_probs=74.5
Q ss_pred cccceEEEeChhHHHHHHhcCC--CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceE
Q 014571 238 VLEGEIFLQNLPSIVTAHALDP--QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315 (422)
Q Consensus 238 ~~~G~~~~Qd~~S~lv~~~L~p--~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~ 315 (422)
+.+|.+...+.-.. ++.+++- -.|.+|| |-|-..-|...+.+.+...+|+.+|+++.-++-+++.+++.|++ |+
T Consensus 20 ~DQ~~~T~eT~~~R-a~~~~~~gdL~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~ 95 (243)
T PF01861_consen 20 LDQGYATPETTLRR-AALMAERGDLEGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IE 95 (243)
T ss_dssp GT---B-HHHHHHH-HHHHHHTT-STT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EE
T ss_pred cccccccHHHHHHH-HHHHHhcCcccCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eE
Confidence 45666655443322 2222222 1577887 66778777777666666789999999999999999999999998 99
Q ss_pred EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCch-------hhhhhCCCCC--ccccccCcccchhHH
Q 014571 316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP-------SIAAEGLNGD--KSCKEKGRTCGECGM 386 (422)
Q Consensus 316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l-------~~lrr~p~~~--~~w~~~~~~~~~l~~ 386 (422)
++.+|.++.... ...++||.++.|||-+-.|.- +.++ .+... ..++..........+
T Consensus 96 ~~~~DlR~~LP~-------------~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~~~~~s~~~~~~ 161 (243)
T PF01861_consen 96 AVHYDLRDPLPE-------------ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFTHKEASPDKWLE 161 (243)
T ss_dssp EE---TTS---T-------------TTSS-BSEEEE---SSHHHHHHHHHHHHHTB--STT-EEEEEE-TTT--HHHHHH
T ss_pred EEEecccccCCH-------------HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEecCcCcHHHHHH
Confidence 999999976421 236789999999999998762 3333 33311 122222211235668
Q ss_pred HHHHHHH
Q 014571 387 AQEEINA 393 (422)
Q Consensus 387 ~Q~~IL~ 393 (422)
.|+.|++
T Consensus 162 ~Q~~l~~ 168 (243)
T PF01861_consen 162 VQRFLLE 168 (243)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9999984
No 228
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=96.62 E-value=0.0032 Score=61.57 Aligned_cols=46 Identities=26% Similarity=0.345 Sum_probs=41.1
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l 306 (422)
.|-.|.+|||++||.|-.|-+||.+ ...|+|+|.++.+++.+++..
T Consensus 86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~ 131 (282)
T KOG1270|consen 86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK 131 (282)
T ss_pred cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh
Confidence 3445789999999999999999998 479999999999999999983
No 229
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.51 E-value=0.0049 Score=59.69 Aligned_cols=48 Identities=19% Similarity=0.117 Sum_probs=43.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~ 309 (422)
.+..+||++|-.|--|.+||...+. -.|+++|+++..++.++++++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence 4667999999999999999999875 57999999999999999998764
No 230
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=96.47 E-value=0.0069 Score=64.68 Aligned_cols=110 Identities=16% Similarity=0.134 Sum_probs=84.3
Q ss_pred ceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHHHHHHHHhCCc-ceEE
Q 014571 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLK-CITT 316 (422)
Q Consensus 241 G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~ 316 (422)
|.||-=-.-|.+.++++.|++.++|.|-|||+||.-+..+..++. ...+++.|++.......+-|+--.|+. ++..
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i 245 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI 245 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence 666554446678899999999999999999999999998888753 378999999999999999998888876 3555
Q ss_pred EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571 317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
..+|...-+.... ......||.|+..||=|+.+.
T Consensus 246 ~~~dtl~~~~~~~----------~~~~~~~D~viaNPPf~~~~~ 279 (489)
T COG0286 246 RHGDTLSNPKHDD----------KDDKGKFDFVIANPPFSGKGW 279 (489)
T ss_pred cccccccCCcccc----------cCCccceeEEEeCCCCCcccc
Confidence 5555543221100 113467999999999997766
No 231
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.47 E-value=0.004 Score=60.19 Aligned_cols=95 Identities=22% Similarity=0.233 Sum_probs=72.1
Q ss_pred HHHHHHhc------CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 250 SIVTAHAL------DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 250 S~lv~~~L------~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
|-|++.++ -++||.+||=++||.|.--.|+.+.+++.|.|+|+|.|+.-=+.|-..+++ -+||.++.-|++.
T Consensus 139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArh 216 (317)
T KOG1596|consen 139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARH 216 (317)
T ss_pred HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCC
Confidence 44555554 378999999999999999999999999999999999998776666666555 3789999999987
Q ss_pred hhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571 324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
+.. +. ..-...|.|+.|.+-+-.
T Consensus 217 P~K------YR------mlVgmVDvIFaDvaqpdq 239 (317)
T KOG1596|consen 217 PAK------YR------MLVGMVDVIFADVAQPDQ 239 (317)
T ss_pred chh------ee------eeeeeEEEEeccCCCchh
Confidence 531 11 112346778877766554
No 232
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=96.42 E-value=0.0035 Score=64.74 Aligned_cols=79 Identities=25% Similarity=0.170 Sum_probs=60.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhhccCCCCCCcccc
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
.+-+|||.-||+|--++..+.-+.+..+|+++|+++..++.+++|++..|++. +++.+.|+..+..
T Consensus 49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~------------ 116 (377)
T PF02005_consen 49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY------------ 116 (377)
T ss_dssp S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC------------
T ss_pred CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh------------
Confidence 45589999999999999999887667899999999999999999999999875 8999999987653
Q ss_pred CCCCCCCCCceeecC
Q 014571 339 NSKDNNYITSQTSDS 353 (422)
Q Consensus 339 ~~~~~~~FD~VLvDa 353 (422)
.....||.|=+||
T Consensus 117 --~~~~~fD~IDlDP 129 (377)
T PF02005_consen 117 --SRQERFDVIDLDP 129 (377)
T ss_dssp --HSTT-EEEEEE--
T ss_pred --hccccCCEEEeCC
Confidence 1246688888887
No 233
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.41 E-value=0.017 Score=53.74 Aligned_cols=83 Identities=17% Similarity=0.161 Sum_probs=67.7
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
-...+-+++++||+|--|+.+++..+++....|.|+++..++.-++.++..+.. +.+++.|...-..
T Consensus 41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~------------ 107 (209)
T KOG3191|consen 41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLR------------ 107 (209)
T ss_pred hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhc------------
Confidence 334778999999999999999999998999999999999999999999888764 7788888654322
Q ss_pred CCCCCCCCCceeecCCcccc
Q 014571 339 NSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCSg~ 358 (422)
.++.|+++..+|---+
T Consensus 108 ----~~~VDvLvfNPPYVpt 123 (209)
T KOG3191|consen 108 ----NESVDVLVFNPPYVPT 123 (209)
T ss_pred ----cCCccEEEECCCcCcC
Confidence 2556888888876443
No 234
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]
Probab=96.38 E-value=0.0039 Score=65.50 Aligned_cols=54 Identities=33% Similarity=0.526 Sum_probs=48.4
Q ss_pred CccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccC
Q 014571 140 AQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE 219 (422)
Q Consensus 140 A~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~ 219 (422)
.++|+||+++|+.+|+.||+|.|.. .+...++|+|.|+..+|.+.++
T Consensus 462 g~v~a~GV~da~edIrpnDeV~vv~---------------------------------~~~v~gVGrA~msg~eM~~akk 508 (519)
T COG1549 462 GSVFAPGVVDADEDIRPNDEVVVVH---------------------------------GGEVRGVGRAVMSGREMVEAKK 508 (519)
T ss_pred ccccccccccCCCCCCcCCEEEEEe---------------------------------CCeEEEEeeeecChHHhcccCC
Confidence 4579999999999999999998883 3568899999999999999999
Q ss_pred cceeecc
Q 014571 220 GIAVDMH 226 (422)
Q Consensus 220 GiaV~~~ 226 (422)
|++|+..
T Consensus 509 GiaV~VR 515 (519)
T COG1549 509 GIAVRVR 515 (519)
T ss_pred ceEEEEE
Confidence 9999864
No 235
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=96.36 E-value=0.0094 Score=52.78 Aligned_cols=61 Identities=25% Similarity=0.312 Sum_probs=50.2
Q ss_pred CCCCCeEEEecCCCChhHHHHHhcc---CCCcEEEEEcCChHHHHHHHHHHHHhC--C-cceEEEec
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMG--L-KCITTYKL 319 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~---~~~g~V~A~D~s~~rl~~l~~~l~r~g--~-~nv~~~~~ 319 (422)
..+...|+|+|||-|--+..++.++ ...-+|+++|.++..++.+.++.++.+ . .++.+...
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 89 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG 89 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence 3788999999999999999999943 245799999999999999999999988 3 34444443
No 236
>PLN02823 spermine synthase
Probab=96.29 E-value=0.019 Score=58.42 Aligned_cols=78 Identities=14% Similarity=0.049 Sum_probs=61.8
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhccCCCCCCccc
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRKNESNDEPNM 337 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~~~~~~~~~~ 337 (422)
..+||-++.|.|+-+..+++.- +..+|+++|+++..++.+++.+...+ -++++++..|++.+...
T Consensus 104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~---------- 172 (336)
T PLN02823 104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK---------- 172 (336)
T ss_pred CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence 4689999999999888777752 34689999999999999998875432 35699999999987632
Q ss_pred cCCCCCCCCCceeecCC
Q 014571 338 CNSKDNNYITSQTSDSM 354 (422)
Q Consensus 338 ~~~~~~~~FD~VLvDaP 354 (422)
..+.||.|++|++
T Consensus 173 ----~~~~yDvIi~D~~ 185 (336)
T PLN02823 173 ----RDEKFDVIIGDLA 185 (336)
T ss_pred ----CCCCccEEEecCC
Confidence 1356999999973
No 237
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.12 E-value=0.019 Score=55.12 Aligned_cols=61 Identities=15% Similarity=0.112 Sum_probs=50.2
Q ss_pred ceEEEeChhHHHHHHhcCCCC--CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 241 GEIFLQNLPSIVTAHALDPQK--GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 241 G~~~~Qd~~S~lv~~~L~p~p--g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
-.+++|-.=+.-+..+|+..+ +.-|||++||+|--+..+.+- .-..+++|+|+.|++.+.+
T Consensus 28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~ 90 (270)
T KOG1541|consen 28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE 90 (270)
T ss_pred eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH
Confidence 457889888888888888776 678999999999876655543 3578999999999999986
No 238
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=96.03 E-value=0.021 Score=60.43 Aligned_cols=65 Identities=22% Similarity=0.173 Sum_probs=51.3
Q ss_pred CCeEEEecCCCChhHHHHHhcc---CCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR 326 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~---~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~ 326 (422)
+..|+|++||+|--+...++.. +...+|+|+|.++..+..+++.+++.|. +.|+++.+|.+.+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC
Confidence 5689999999999876665542 3456999999999999999988888888 569999999998643
No 239
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=95.87 E-value=0.017 Score=60.80 Aligned_cols=52 Identities=19% Similarity=0.228 Sum_probs=46.5
Q ss_pred ccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHH
Q 014571 14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA 66 (422)
Q Consensus 14 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~ 66 (422)
++++-+.+++.+.||.+..+.+++++..||. +++||||++++++++++.|..
T Consensus 150 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~~~~~~~~~~~l~~ 201 (445)
T PRK14904 150 SHPEWLLERWIARYGEERTEAMLSYNNQAPL-FGFRINRLKTTPEKFLAAPAD 201 (445)
T ss_pred CCCHHHHHHHHHHhChHHHHHHHHHhCCCCC-ceeEeCCCCCCHHHHHHHHHh
Confidence 5788899999999998889999999999887 588999999999998887764
No 240
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=95.86 E-value=0.011 Score=55.30 Aligned_cols=51 Identities=25% Similarity=0.327 Sum_probs=41.5
Q ss_pred EeChhHHHHHHhcC-------CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCC
Q 014571 245 LQNLPSIVTAHALD-------PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~-------p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s 295 (422)
+||.-|--+-.+++ .+||++|||++||||.-+...-+..+++|.|+++|+-
T Consensus 46 v~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 46 VQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred HhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 45655555555554 3589999999999999999888999999999999974
No 241
>PRK04148 hypothetical protein; Provisional
Probab=95.80 E-value=0.042 Score=48.81 Aligned_cols=58 Identities=16% Similarity=0.230 Sum_probs=42.7
Q ss_pred hcCCCCCCeEEEecCCCCh-hHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 256 ALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGg-KT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.+....+.+|||+++|.|. .+..+++. ...|+|+|+++..++.++++ + +.++..|...
T Consensus 11 ~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~ 69 (134)
T PRK04148 11 NYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN 69 (134)
T ss_pred hcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence 3334467899999999996 55566654 36999999999988877664 3 5677777654
No 242
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=95.77 E-value=0.012 Score=55.25 Aligned_cols=59 Identities=32% Similarity=0.320 Sum_probs=48.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
.|.+|||+|||+|--+...+.. +..+|++.|+.+.....++-|++..|+ +|.++..|..
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~ 137 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLI 137 (218)
T ss_pred ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeecccc
Confidence 5899999999999766655544 467999999999999999999999885 4777766643
No 243
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.68 E-value=0.046 Score=55.93 Aligned_cols=77 Identities=19% Similarity=0.037 Sum_probs=63.5
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
..+|+|.-+|+|--...+|--.+.. +|+++|++++-++.+++|++.....+..++..|+-.+...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~-------------- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE-------------- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--------------
Confidence 7799999999999999999887654 9999999999999999999998556777777888766532
Q ss_pred CCCCCCceeecC
Q 014571 342 DNNYITSQTSDS 353 (422)
Q Consensus 342 ~~~~FD~VLvDa 353 (422)
....||.|=+||
T Consensus 118 ~~~~fd~IDiDP 129 (380)
T COG1867 118 LHRAFDVIDIDP 129 (380)
T ss_pred cCCCccEEecCC
Confidence 135677777776
No 244
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=95.68 E-value=0.043 Score=53.38 Aligned_cols=86 Identities=15% Similarity=0.126 Sum_probs=64.5
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----cceEEEecchhhhhhccC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----KCITTYKLDALKAVRRKN 329 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----~nv~~~~~Da~~~~~~~~ 329 (422)
+..+.+ ...+||=++.|.|+.+..+...- +..+|+++|+++.-++.+++-+..... ++++++..|++.+....
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~- 146 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET- 146 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-
Confidence 333334 57799999999999988887762 346899999999999999988766432 47999999999987532
Q ss_pred CCCCCccccCCCCCC-CCCceeecCCc
Q 014571 330 ESNDEPNMCNSKDNN-YITSQTSDSMK 355 (422)
Q Consensus 330 ~~~~~~~~~~~~~~~-~FD~VLvDaPC 355 (422)
.. +||.|++|++=
T Consensus 147 -------------~~~~yDvIi~D~~d 160 (246)
T PF01564_consen 147 -------------QEEKYDVIIVDLTD 160 (246)
T ss_dssp -------------SST-EEEEEEESSS
T ss_pred -------------cCCcccEEEEeCCC
Confidence 23 79999999875
No 245
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.54 E-value=0.063 Score=51.37 Aligned_cols=103 Identities=11% Similarity=0.004 Sum_probs=72.3
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN 332 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~ 332 (422)
+....+..+..+|+|++.|.|..+..+++.. +..+++.+|. +.-++.+++ .++|+++.+|....
T Consensus 92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~-------- 155 (241)
T PF00891_consen 92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP-------- 155 (241)
T ss_dssp HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC--------
T ss_pred hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhh--------
Confidence 3455667778899999999999999999885 5679999999 777777776 57799999997621
Q ss_pred CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceec--cEEEe
Q 014571 333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQ--KVLVL 406 (422)
Q Consensus 333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~--~~~~~ 406 (422)
.+. +|.+++ ....+.|.++. -..||+++.. ++.+ |.|++
T Consensus 156 ---------~P~-~D~~~l----------------~~vLh~~~d~~---------~~~iL~~~~~al~pg~~g~llI 197 (241)
T PF00891_consen 156 ---------LPV-ADVYLL----------------RHVLHDWSDED---------CVKILRNAAAALKPGKDGRLLI 197 (241)
T ss_dssp ---------CSS-ESEEEE----------------ESSGGGS-HHH---------HHHHHHHHHHHSEECTTEEEEE
T ss_pred ---------hcc-ccceee----------------ehhhhhcchHH---------HHHHHHHHHHHhCCCCCCeEEE
Confidence 123 687877 12234566542 3578988854 8987 77766
No 246
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.36 E-value=0.071 Score=49.14 Aligned_cols=113 Identities=20% Similarity=0.185 Sum_probs=79.8
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~ 333 (422)
+...++..|--||+++.|+|-.|-.|.+.+-....++++|.++..+..+.+. .+.+.++.+|+........
T Consensus 41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~l~---- 111 (194)
T COG3963 41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTTLG---- 111 (194)
T ss_pred HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHHHh----
Confidence 3455788899999999999999999999987778999999999999988874 3456688899876542111
Q ss_pred CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh-ccceeccEEEe
Q 014571 334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV-VGLRIQKVLVL 406 (422)
Q Consensus 334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a-~~lr~~~~~~~ 406 (422)
......||.|++-.|--..-+ . .-.+||+.+ ..++.+|.+|.
T Consensus 112 ------e~~gq~~D~viS~lPll~~P~-----------------~--------~~iaile~~~~rl~~gg~lvq 154 (194)
T COG3963 112 ------EHKGQFFDSVISGLPLLNFPM-----------------H--------RRIAILESLLYRLPAGGPLVQ 154 (194)
T ss_pred ------hcCCCeeeeEEeccccccCcH-----------------H--------HHHHHHHHHHHhcCCCCeEEE
Confidence 122456888887443222211 0 123666666 34788888876
No 247
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=95.25 E-value=0.077 Score=52.84 Aligned_cols=85 Identities=15% Similarity=0.133 Sum_probs=68.8
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhcc
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRK 328 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~ 328 (422)
+.....++| .+||=++-|.|+-+-.+.... +-.+++.+|++++-++..++-+.... -+.++++..|+.++....
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 334445667 699999999999988888874 36799999999999999999887654 356899999999987532
Q ss_pred CCCCCCccccCCCCCCCCCceeecC
Q 014571 329 NESNDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 329 ~~~~~~~~~~~~~~~~~FD~VLvDa 353 (422)
...||+|++|.
T Consensus 147 --------------~~~fDvIi~D~ 157 (282)
T COG0421 147 --------------EEKFDVIIVDS 157 (282)
T ss_pred --------------CCcCCEEEEcC
Confidence 23799999997
No 248
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=95.24 E-value=0.014 Score=60.62 Aligned_cols=65 Identities=20% Similarity=0.166 Sum_probs=57.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceEEEecchhhhhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALKAVR 326 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~~~~~Da~~~~~ 326 (422)
-++|+.|-|+|||-|-.+..++.. ..+|+|+|.++..++.++.|++...+ .+|+++.+||..+..
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr 313 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR 313 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence 468999999999999999888876 37999999999999999999987665 459999999998875
No 249
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=95.21 E-value=0.032 Score=55.03 Aligned_cols=75 Identities=9% Similarity=-0.027 Sum_probs=55.0
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~ 343 (422)
+++|+|||.||.+.-+-+.- --.|.|+|+++...+..+.|.. .....|.++..... .+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~-------------l~ 59 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD-------------LP 59 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH-------------HH
T ss_pred cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-------cccccccccccccc-------------cc
Confidence 79999999999999887762 3479999999999999999865 67778888765431 01
Q ss_pred CCCCceeecCCccccCc
Q 014571 344 NYITSQTSDSMKLHKEV 360 (422)
Q Consensus 344 ~~FD~VLvDaPCSg~G~ 360 (422)
..+|.++.-+||.+-..
T Consensus 60 ~~~D~l~ggpPCQ~fS~ 76 (335)
T PF00145_consen 60 KDVDLLIGGPPCQGFSI 76 (335)
T ss_dssp HT-SEEEEE---TTTST
T ss_pred ccceEEEeccCCceEec
Confidence 13799999999999766
No 250
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=95.15 E-value=0.015 Score=62.61 Aligned_cols=39 Identities=31% Similarity=0.434 Sum_probs=35.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChH
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~ 297 (422)
++++..|||+||||||-.-..++.|+-.+.|+++|+-+=
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi 80 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI 80 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence 468899999999999999888899998999999998764
No 251
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=95.06 E-value=0.05 Score=49.97 Aligned_cols=62 Identities=23% Similarity=0.213 Sum_probs=42.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC---CcceEEEecchh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG---LKCITTYKLDAL 322 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g---~~nv~~~~~Da~ 322 (422)
..+|.+||+++||.|--++.+|.+. +..+|++-|.++ -++.++.|+++.+ -.++.+...|-.
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg 107 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG 107 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence 3468899999999998887777773 457999999998 9999999999876 345777776653
No 252
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=94.93 E-value=0.18 Score=50.68 Aligned_cols=60 Identities=18% Similarity=0.200 Sum_probs=44.3
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
..+...+.+-.|.+|||++|+.|-.+..|+.. +...|+|+|.+..-+...+-.-+-+|..
T Consensus 105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~ 164 (315)
T PF08003_consen 105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQD 164 (315)
T ss_pred HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCC
Confidence 44555555668999999999999999999887 3468999999988765544433334443
No 253
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=94.82 E-value=0.14 Score=51.81 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=52.7
Q ss_pred hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--c----ceEEEecchh
Q 014571 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--K----CITTYKLDAL 322 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~----nv~~~~~Da~ 322 (422)
-|||+-... ++++.++||+||-||-.+-.-.. +-+..+++|+..--++.++++.+...- . .+.++.+|.+
T Consensus 107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~ 182 (389)
T KOG1975|consen 107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF 182 (389)
T ss_pred HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence 466665554 67999999999999977665433 357899999999999998887765421 1 2567777776
Q ss_pred hh
Q 014571 323 KA 324 (422)
Q Consensus 323 ~~ 324 (422)
+-
T Consensus 183 ~~ 184 (389)
T KOG1975|consen 183 KE 184 (389)
T ss_pred hh
Confidence 54
No 254
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=94.82 E-value=0.092 Score=50.63 Aligned_cols=65 Identities=12% Similarity=-0.000 Sum_probs=50.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH------------HHhCCcceEEEecchhhhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA------------AEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l------------~r~g~~nv~~~~~Da~~~~ 325 (422)
.+.+|.+||+..||.|--...||++ .-.|+|+|+|+.-++...+.. ++....+|+++++|...+.
T Consensus 40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~ 116 (226)
T PRK13256 40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP 116 (226)
T ss_pred CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence 3446789999999999999999997 357999999999999876521 1122246899999987653
No 255
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=94.25 E-value=0.068 Score=54.12 Aligned_cols=65 Identities=9% Similarity=0.021 Sum_probs=51.6
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHHHHHHHHhCCcce--EEEecchhhh
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLKCI--TTYKLDALKA 324 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l~~~l~r~g~~nv--~~~~~Da~~~ 324 (422)
.++..++|++||.|.||.++.+.+.. ...-+++|+|...++.+.+++..-.++.+ ..+++|-...
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~ 144 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG 144 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence 46779999999999999999887743 35689999999999999999984445554 4477776654
No 256
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=94.13 E-value=0.12 Score=49.10 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=46.4
Q ss_pred HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH-------HHhCC--cceEEEecchhhh
Q 014571 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA-------AEMGL--KCITTYKLDALKA 324 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l-------~r~g~--~nv~~~~~Da~~~ 324 (422)
...+++.+++.++|++||.|.-.++.|... +-.+.+++|+.+...+.+++.. +.+|. ..+.+..+|..+.
T Consensus 35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~ 113 (205)
T PF08123_consen 35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP 113 (205)
T ss_dssp HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence 356789999999999999999888887654 3457999999999886655433 33454 3577888887654
Q ss_pred h
Q 014571 325 V 325 (422)
Q Consensus 325 ~ 325 (422)
.
T Consensus 114 ~ 114 (205)
T PF08123_consen 114 D 114 (205)
T ss_dssp H
T ss_pred H
Confidence 3
No 257
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=94.09 E-value=0.099 Score=51.75 Aligned_cols=84 Identities=18% Similarity=0.205 Sum_probs=63.4
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
|..|+=|+ --..|...+.+.+-.-+|..+|+++.-++.+.+-++.+|++||+++.+|.+++... .
T Consensus 153 gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-------------~ 217 (354)
T COG1568 153 GKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-------------D 217 (354)
T ss_pred CCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-------------H
Confidence 55566554 33344444444433458999999999999999999999999999999999986532 2
Q ss_pred CCCCCCceeecCCccccCc
Q 014571 342 DNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg~G~ 360 (422)
..++||..+-|||-+-.|.
T Consensus 218 ~~~kFDvfiTDPpeTi~al 236 (354)
T COG1568 218 LKRKFDVFITDPPETIKAL 236 (354)
T ss_pred HHhhCCeeecCchhhHHHH
Confidence 3678999999999886644
No 258
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=93.96 E-value=0.11 Score=53.72 Aligned_cols=63 Identities=19% Similarity=0.269 Sum_probs=55.2
Q ss_pred CCCEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
..-.++||.+|.+|+. +|+.+.+.||++....|++||.|.+. .+.+.
T Consensus 275 ~~G~i~vd~ga~~al~~~~~sLl~~gi~~v~g~F~~gd~v~i~--------------------------------~~~g~ 322 (368)
T PRK13402 275 PQGEIVVENDFDRALDNHSEQLTSDDVVEIKGDFSVGDTILVR--------------------------------KGDGT 322 (368)
T ss_pred CCeeEEECccHHHHHHhcCCcccccceEEEeCEecCCCEEEEE--------------------------------CCCCC
Confidence 4458999999999997 58999999999999999999999999 33567
Q ss_pred EEEEccCccCHHHHhc
Q 014571 201 YIGQGTAMMSRAGIFR 216 (422)
Q Consensus 201 ~Vrvg~a~msreel~~ 216 (422)
.|+-|....+.+|+.+
T Consensus 323 ~~~rg~~~y~s~~~~~ 338 (368)
T PRK13402 323 KLAKGKSNYSSCLLNF 338 (368)
T ss_pred EEEEEEccCCHHHHHH
Confidence 8899999999988864
No 259
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=93.96 E-value=0.021 Score=47.47 Aligned_cols=81 Identities=22% Similarity=0.188 Sum_probs=28.5
Q ss_pred EEecCCCChhHHHHHhccCCCc--EEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571 266 LDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (422)
Q Consensus 266 LD~CAgpGgKT~~la~l~~~~g--~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~ 342 (422)
|+++++.|.-|..+++.+.+.+ +++++|..+. .+..++.+++.++ .+++++.+|+........
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~------------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP------------- 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-------------
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-------------
Confidence 5678889999999999886654 8999999996 4455556666666 469999999977643321
Q ss_pred CCCCCceeecCCccccCc
Q 014571 343 NNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 343 ~~~FD~VLvDaPCSg~G~ 360 (422)
...||.+++|++=+..++
T Consensus 67 ~~~~dli~iDg~H~~~~~ 84 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYEAV 84 (106)
T ss_dssp H--EEEEEEES---HHHH
T ss_pred CCCEEEEEECCCCCHHHH
Confidence 256899999975444333
No 260
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.91 E-value=0.21 Score=47.65 Aligned_cols=80 Identities=13% Similarity=0.037 Sum_probs=57.3
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceE-EEecchhhhhhccCCCCCC
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT-TYKLDALKAVRRKNESNDE 334 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~-~~~~Da~~~~~~~~~~~~~ 334 (422)
++....-..||+++||||.---. .. +.+...|+++|.++++-+.+.+.++.....++. ++.+|+...+.-
T Consensus 71 ~~gk~~K~~vLEvgcGtG~Nfkf-y~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l------- 141 (252)
T KOG4300|consen 71 FLGKSGKGDVLEVGCGTGANFKF-YP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL------- 141 (252)
T ss_pred HhcccCccceEEecccCCCCccc-cc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-------
Confidence 33333334689999999975322 22 124579999999999999999999887666776 889998876522
Q ss_pred ccccCCCCCCCCCceee
Q 014571 335 PNMCNSKDNNYITSQTS 351 (422)
Q Consensus 335 ~~~~~~~~~~~FD~VLv 351 (422)
..+++|.|++
T Consensus 142 -------~d~s~DtVV~ 151 (252)
T KOG4300|consen 142 -------ADGSYDTVVC 151 (252)
T ss_pred -------ccCCeeeEEE
Confidence 1456787765
No 261
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=93.72 E-value=0.088 Score=52.29 Aligned_cols=48 Identities=31% Similarity=0.353 Sum_probs=34.4
Q ss_pred HHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccccCCCCCcEEEE
Q 014571 35 ISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFV 105 (422)
Q Consensus 35 ~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~ 105 (422)
|+++.-.+| -+++||||+|++++++++.|.++ | +....++..++.+.+
T Consensus 1 il~~~n~~~-~~~iRvN~~k~~~~~~~~~L~~~---------g-------------~~~~~~~~~~~~~~~ 48 (283)
T PF01189_consen 1 ILEANNCPP-PVTIRVNTLKISREELLEELEEE---------G-------------IQLEPIPRSPDALRV 48 (283)
T ss_dssp HHHHCTS---GEEEEE-TTTSSHHHHHHHHHHT---------T-------------HEEEEETSTTCEEEE
T ss_pred CccccCCCC-CeEEEECcCcCCHHHHHHHHhhc---------c-------------cceEEcccccchhcc
Confidence 455665555 46899999999999999999866 4 555667788888444
No 262
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=93.34 E-value=0.14 Score=50.27 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=44.6
Q ss_pred ccceEEEeChhHHHHHHhcCCC--------CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 239 LEGEIFLQNLPSIVTAHALDPQ--------KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv~~~L~p~--------pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
..|..++-+.. | ...+|... ...++||++||-|+-|.+++.+. .+|+|.|.|+.|..++++
T Consensus 66 gRG~MFvfS~~-Q-~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 66 GRGSMFVFSEE-Q-FRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCcEEEecHH-H-HHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh
Confidence 46666665532 3 34444433 46789999999999999999986 469999999988655554
No 263
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=93.28 E-value=0.13 Score=49.21 Aligned_cols=66 Identities=23% Similarity=0.135 Sum_probs=49.1
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH------------hCCcceEEEecchhhh
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE------------MGLKCITTYKLDALKA 324 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r------------~g~~nv~~~~~Da~~~ 324 (422)
+..+++.+||+-.||.|--...+|+. .-.|+|+|+|+.-++.+.+.... ....+|+++++|...+
T Consensus 33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 34678899999999999999999986 36999999999999987432221 1123578899998775
Q ss_pred h
Q 014571 325 V 325 (422)
Q Consensus 325 ~ 325 (422)
.
T Consensus 110 ~ 110 (218)
T PF05724_consen 110 P 110 (218)
T ss_dssp G
T ss_pred C
Confidence 4
No 264
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=92.88 E-value=0.48 Score=50.76 Aligned_cols=106 Identities=13% Similarity=0.062 Sum_probs=69.3
Q ss_pred cceEEEeChhHHHHHHhcCCC--CCCeEEEecCCCChhHHHHHhccC---CCcEEEEEcCChHHHHHHHHHHHHhCCc--
Q 014571 240 EGEIFLQNLPSIVTAHALDPQ--KGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLK-- 312 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L~p~--pg~~VLD~CAgpGgKT~~la~l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~-- 312 (422)
.|.++.-..-+.+.+..+++. |+..|.|+|||+||.-......+. ..-.+++.+.........+.|+.-.|..
T Consensus 194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~ 273 (501)
T TIGR00497 194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA 273 (501)
T ss_pred CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence 556665444455666777765 788999999999998765444332 1246899999999998888887655542
Q ss_pred ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571 313 CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 313 nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
......+|....+ +. .....||.|+.++|=+..
T Consensus 274 t~~~~~~dtl~~~-------d~------~~~~~~D~v~~NpPf~~~ 306 (501)
T TIGR00497 274 NFNIINADTLTTK-------EW------ENENGFEVVVSNPPYSIS 306 (501)
T ss_pred ccCcccCCcCCCc-------cc------cccccCCEEeecCCcccc
Confidence 2233334432211 10 113459999999998763
No 265
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=92.71 E-value=0.24 Score=49.83 Aligned_cols=74 Identities=11% Similarity=-0.088 Sum_probs=54.3
Q ss_pred EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCC
Q 014571 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNN 344 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~ 344 (422)
|+|++||.||.+.-+-+. + --.+.|+|+++..++..+.|.. + .++..|.++..... ..
T Consensus 1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--------------~~ 58 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--------------IP 58 (315)
T ss_pred CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--------------CC
Confidence 689999999999888765 2 2356789999999999988742 2 34456776653211 12
Q ss_pred CCCceeecCCccccCc
Q 014571 345 YITSQTSDSMKLHKEV 360 (422)
Q Consensus 345 ~FD~VLvDaPCSg~G~ 360 (422)
.+|.++.-+||.+--.
T Consensus 59 ~~dvl~gg~PCq~fS~ 74 (315)
T TIGR00675 59 DFDILLGGFPCQPFSI 74 (315)
T ss_pred CcCEEEecCCCcccch
Confidence 3799999999999765
No 266
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=92.67 E-value=0.5 Score=44.86 Aligned_cols=60 Identities=18% Similarity=0.180 Sum_probs=49.2
Q ss_pred EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhh
Q 014571 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV 325 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~ 325 (422)
|.|+||==|--...+.+. +...+++|+|+++.=++.+++++++.|+. .|++..+|+....
T Consensus 1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l 61 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL 61 (205)
T ss_dssp EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-
T ss_pred CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc
Confidence 689999999999988886 33458999999999999999999999975 4999999998754
No 267
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=92.60 E-value=0.2 Score=46.41 Aligned_cols=43 Identities=21% Similarity=0.256 Sum_probs=31.1
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
-.+|+.|||-+||.|. |.+.|..++ -+-+++|+++.-++.+++
T Consensus 189 t~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence 4689999999999996 555555553 469999999998887764
No 268
>PRK11524 putative methyltransferase; Provisional
Probab=92.60 E-value=0.23 Score=49.16 Aligned_cols=46 Identities=15% Similarity=0.105 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
.+|+.|||-++|.|. |...|..++ -+-+++|+++.-++.++++++.
T Consensus 207 ~~GD~VLDPF~GSGT-T~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~ 252 (284)
T PRK11524 207 NPGDIVLDPFAGSFT-TGAVAKASG--RKFIGIEINSEYIKMGLRRLDV 252 (284)
T ss_pred CCCCEEEECCCCCcH-HHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence 689999999999995 444455543 4789999999999999998764
No 269
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=92.39 E-value=0.077 Score=56.14 Aligned_cols=85 Identities=22% Similarity=0.211 Sum_probs=70.3
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcc
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
+-.++-+|||.-+|+|--++..|..+.+-+.|+|+|.+++-++.+++|.+..+..+ ++....|+....-.
T Consensus 106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~--------- 176 (525)
T KOG1253|consen 106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE--------- 176 (525)
T ss_pred hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh---------
Confidence 34567899999999999999999999999999999999999999999999988755 77888898765432
Q ss_pred ccCCCCCCCCCceeecC
Q 014571 337 MCNSKDNNYITSQTSDS 353 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDa 353 (422)
+......||+|=+||
T Consensus 177 --~~~~~~~FDvIDLDP 191 (525)
T KOG1253|consen 177 --HPMVAKFFDVIDLDP 191 (525)
T ss_pred --ccccccccceEecCC
Confidence 112246788888887
No 270
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.19 E-value=0.19 Score=48.79 Aligned_cols=78 Identities=17% Similarity=0.135 Sum_probs=51.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH-HHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD-IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~-l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
+|..+||++|.+||+|--+.+. +..+|+|+|....-+.- +++ ...-+.....|++.+...
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~------------ 139 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPE------------ 139 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHH------------
Confidence 6889999999999999999887 45799999998764432 222 111233334455544221
Q ss_pred CCCCCCCCceeecCCcccc
Q 014571 340 SKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~ 358 (422)
+..+..|.+.+|..=.+.
T Consensus 140 -~~~~~~d~~v~DvSFISL 157 (245)
T COG1189 140 -DFTEKPDLIVIDVSFISL 157 (245)
T ss_pred -HcccCCCeEEEEeehhhH
Confidence 123356889999876654
No 271
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.08 E-value=0.13 Score=49.68 Aligned_cols=52 Identities=29% Similarity=0.481 Sum_probs=38.7
Q ss_pred CeEEEecCCCChhHHHHHhccCC----Cc----EEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLRD----EG----EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~----~g----~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
.+|+|+|||||.-+-.+++.+.. .+ +|+|+|+-+ -.-++.|..+++|.++..
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DIT~~s 102 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDITSAS 102 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeecccCCHh
Confidence 58999999999999999876633 22 399999863 123456788888887653
No 272
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=92.01 E-value=0.44 Score=47.81 Aligned_cols=86 Identities=13% Similarity=0.014 Sum_probs=50.3
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.-++||++.|.-..-..|+..+. .-+.+|.|+++.-++.+++|+++. ++. .|+++............
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i---------- 171 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI---------- 171 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS----------
T ss_pred ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh----------
Confidence 45899999998887666665553 579999999999999999999998 774 48777653322111100
Q ss_pred CCCCCCCCceeecCCcccc
Q 014571 340 SKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~ 358 (422)
....+.||..+|.||==.+
T Consensus 172 ~~~~e~~dftmCNPPFy~s 190 (299)
T PF05971_consen 172 IQPNERFDFTMCNPPFYSS 190 (299)
T ss_dssp TT--S-EEEEEE-----SS
T ss_pred hcccceeeEEecCCccccC
Confidence 0123579999999996544
No 273
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=91.84 E-value=0.64 Score=44.18 Aligned_cols=84 Identities=18% Similarity=0.170 Sum_probs=61.6
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcce-EEEecchhhhhhccCCCCCCcccc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv-~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
..+.+||+++||+|-.+.++|+.+. .-.-.--|.+......++..+...|++|+ ..+..|.+.........
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~------- 95 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP------- 95 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc-------
Confidence 3444799999999999999999985 46777889999999999999999999885 45667776543221100
Q ss_pred CCCCCCCCCceee
Q 014571 339 NSKDNNYITSQTS 351 (422)
Q Consensus 339 ~~~~~~~FD~VLv 351 (422)
.......||.|++
T Consensus 96 ~~~~~~~~D~i~~ 108 (204)
T PF06080_consen 96 APLSPESFDAIFC 108 (204)
T ss_pred cccCCCCcceeee
Confidence 0012456888875
No 274
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=91.76 E-value=0.49 Score=45.39 Aligned_cols=63 Identities=22% Similarity=0.164 Sum_probs=44.2
Q ss_pred EeChhHHHHHHhcCCC---CCCeEEEecCCCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHH
Q 014571 245 LQNLPSIVTAHALDPQ---KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAA 307 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~---pg~~VLD~CAgpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~ 307 (422)
+=-++|-+.-+.+... .+-+++|-|||.|...+.++-+-++. ..|+|-|+++..++.+++|+.
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~ 98 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS 98 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence 3345666666665544 34589999999999998887664332 589999999999988887764
No 275
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=91.75 E-value=0.53 Score=47.90 Aligned_cols=59 Identities=25% Similarity=0.171 Sum_probs=46.2
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL 322 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~ 322 (422)
.|..|||++||.|-.++..|+. +..+|+|+|-| .|.+-+++..+...+ +.|.++.+-..
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiE 236 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIE 236 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccc
Confidence 5788999999999998888776 45799999988 678888877776554 45777766543
No 276
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=91.44 E-value=0.09 Score=52.54 Aligned_cols=63 Identities=19% Similarity=0.110 Sum_probs=49.3
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~ 324 (422)
.|+.|.||.||-|-+|+...-.. +...|+|+|.++.-++.++++++..++.. ..++.+|.+..
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~ 257 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP 257 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence 46999999999999999443332 35699999999999999999999877532 45566676653
No 277
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=91.07 E-value=0.32 Score=47.33 Aligned_cols=53 Identities=23% Similarity=0.219 Sum_probs=40.1
Q ss_pred hHHHHHHhcCCCCCC-eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 249 PSIVTAHALDPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 249 ~S~lv~~~L~p~pg~-~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
++-+.-......+++ ..+|++||+|--+..+|+.. -+|+|.|+|+.+++.+++
T Consensus 20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k 73 (261)
T KOG3010|consen 20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK 73 (261)
T ss_pred cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence 355555666666777 79999999995455556663 479999999999997765
No 278
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=90.36 E-value=0.76 Score=46.85 Aligned_cols=63 Identities=24% Similarity=0.175 Sum_probs=51.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA 324 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~ 324 (422)
.-.|..|||++||+|-.+.-.|+. +..+|+|+|-| ..++.+++.++..|+.+ |+++++.....
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE
Confidence 347889999999999988877776 36799999998 55689999999999977 78888766554
No 279
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=90.29 E-value=0.47 Score=46.91 Aligned_cols=49 Identities=22% Similarity=0.237 Sum_probs=40.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~ 309 (422)
...+|||++||||.-+..+.+..+...+++++|.|+.+++..+..++..
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~ 81 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG 81 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence 3468999999999877777777766678999999999999888876654
No 280
>PHA01634 hypothetical protein
Probab=89.67 E-value=0.87 Score=40.35 Aligned_cols=48 Identities=13% Similarity=0.023 Sum_probs=40.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
.|.+|+|++|+-|.-++.++-. +..+|+|+|.+++..+.++++++-..
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhe
Confidence 4789999999999877766543 56799999999999999999888763
No 281
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=89.54 E-value=0.27 Score=47.59 Aligned_cols=46 Identities=22% Similarity=0.255 Sum_probs=37.4
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~ 305 (422)
+++.+-.++||++||+|-..-.|-.+. .++.++|+|.+|++++.++
T Consensus 121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence 344556899999999998887777663 5799999999999988763
No 282
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=89.34 E-value=1.7 Score=43.93 Aligned_cols=78 Identities=10% Similarity=-0.046 Sum_probs=57.2
Q ss_pred CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571 263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD 342 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~ 342 (422)
-+++|+|||-||...-+.+.- --.+.|+|+++..++..+.|... -.+...|........ .
T Consensus 4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-------------~ 63 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-------------L 63 (328)
T ss_pred ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-------------c
Confidence 479999999999998777652 34789999999999999987543 344555655443211 1
Q ss_pred CC-CCCceeecCCccccCc
Q 014571 343 NN-YITSQTSDSMKLHKEV 360 (422)
Q Consensus 343 ~~-~FD~VLvDaPCSg~G~ 360 (422)
.. .+|.++--+||-+--.
T Consensus 64 ~~~~~DvligGpPCQ~FS~ 82 (328)
T COG0270 64 RKSDVDVLIGGPPCQDFSI 82 (328)
T ss_pred cccCCCEEEeCCCCcchhh
Confidence 11 5899999999998666
No 283
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=88.21 E-value=0.88 Score=46.55 Aligned_cols=40 Identities=30% Similarity=0.530 Sum_probs=38.3
Q ss_pred CEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEe
Q 014571 124 KEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVS 163 (422)
Q Consensus 124 k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~ 163 (422)
-.|+||.+|.+|++ .|..+...||.....+|..||.|.+.
T Consensus 280 G~i~iD~GA~~Al~~~gkSLLpaGV~~V~G~F~rGdvV~i~ 320 (369)
T COG0263 280 GEITVDAGAVEALLEQGKSLLPAGVTSVEGNFSRGDVVRIR 320 (369)
T ss_pred ceEEECccHHHHHHhcCCccccccceEeeeeecCCCEEEEe
Confidence 67999999999999 89999999999999999999999998
No 284
>PRK10458 DNA cytosine methylase; Provisional
Probab=87.50 E-value=1.9 Score=45.98 Aligned_cols=94 Identities=10% Similarity=0.001 Sum_probs=58.2
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC---CCcccc
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN---DEPNMC 338 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~---~~~~~~ 338 (422)
.-+++|+|||.||.+.-+-+. + --.|.|+|+++...+..+.|.. +.+....+..|.+++........ ......
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~ 163 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEHI 163 (467)
T ss_pred CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhhh
Confidence 458999999999999888655 2 2367899999999998888732 11233455567666532110000 000000
Q ss_pred CCCCCCCCCceeecCCccccCc
Q 014571 339 NSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 339 ~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
... ...+|.++--+||.+--.
T Consensus 164 ~~~-~p~~DvL~gGpPCQ~FS~ 184 (467)
T PRK10458 164 RQH-IPDHDVLLAGFPCQPFSL 184 (467)
T ss_pred hcc-CCCCCEEEEcCCCCccch
Confidence 001 124799999999998654
No 285
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=87.42 E-value=2.1 Score=41.12 Aligned_cols=103 Identities=14% Similarity=-0.003 Sum_probs=62.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS 340 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~ 340 (422)
.-.+.||++||-|..|-++..-+ --+|..+|..++.++.+++.+...+-....+++.-...+..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P-------------- 118 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP-------------- 118 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------------
T ss_pred CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC--------------
Confidence 46789999999999998876543 35899999999999999976544221223444433332211
Q ss_pred CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHH-HHHHHh-ccceeccEEEe
Q 014571 341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQE-EINALV-VGLRIQKVLVL 406 (422)
Q Consensus 341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~-~IL~~a-~~lr~~~~~~~ 406 (422)
...+||.|-+ +|-.. .|+.-|. +.|+++ .+|+.+|++|+
T Consensus 119 -~~~~YDlIW~---------------------QW~lg-----hLTD~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 119 -EEGKYDLIWI---------------------QWCLG-----HLTDEDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp --TT-EEEEEE---------------------ES-GG-----GS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -CCCcEeEEEe---------------------hHhhc-----cCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence 1234565543 67643 4555555 666666 67999999998
No 286
>PRK13699 putative methylase; Provisional
Probab=86.81 E-value=1.3 Score=42.49 Aligned_cols=49 Identities=16% Similarity=0.085 Sum_probs=38.0
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
-.+|+.|||-++|.|. |...|..++ -..+++|+++.-.+.+.++++...
T Consensus 161 s~~g~~vlDpf~Gsgt-t~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~~ 209 (227)
T PRK13699 161 THPNAIVLDPFAGSGS-TCVAALQSG--RRYIGIELLEQYHRAGQQRLAAVQ 209 (227)
T ss_pred CCCCCEEEeCCCCCCH-HHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence 4689999999999995 333334432 478899999999999998887753
No 287
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=86.56 E-value=0.9 Score=44.29 Aligned_cols=81 Identities=16% Similarity=0.226 Sum_probs=57.0
Q ss_pred ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~ 317 (422)
+.-.+..|+.+..++. +-++.++||.++||.|+-...|.+-..+ +-+|+|+|.|+..++..+++....- +++...
T Consensus 52 kdR~wL~~Efpel~~~---~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~af 127 (264)
T KOG2361|consen 52 KDRNWLLREFPELLPV---DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAF 127 (264)
T ss_pred chhHHHHHhhHHhhCc---cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccc
Confidence 3444455555544322 1223338999999999999999886543 4799999999999999998865543 557777
Q ss_pred ecchhh
Q 014571 318 KLDALK 323 (422)
Q Consensus 318 ~~Da~~ 323 (422)
+.|.+.
T Consensus 128 v~Dlt~ 133 (264)
T KOG2361|consen 128 VWDLTS 133 (264)
T ss_pred ceeccc
Confidence 777664
No 288
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=85.18 E-value=0.87 Score=43.35 Aligned_cols=84 Identities=21% Similarity=0.221 Sum_probs=46.5
Q ss_pred cceEEEeChhHHHHHHhc--CCCCCCeEEEecCCCChhHHHHHhc---cCCCcEEEEEcCChHHHHHHHHHHHHhCCcce
Q 014571 240 EGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASL---LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314 (422)
Q Consensus 240 ~G~~~~Qd~~S~lv~~~L--~p~pg~~VLD~CAgpGgKT~~la~l---~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv 314 (422)
.|.-.+|.+-=|++...| +.+ .+.|+.++.+-||-+...|++ +++.++|+++|++-....+.......+ .+.|
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI 87 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRI 87 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTE
T ss_pred CCeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCce
Confidence 366666666555554433 233 469999999999998877754 457899999999755443322222122 2679
Q ss_pred EEEecchhhhh
Q 014571 315 TTYKLDALKAV 325 (422)
Q Consensus 315 ~~~~~Da~~~~ 325 (422)
+++++|+....
T Consensus 88 ~~i~Gds~d~~ 98 (206)
T PF04989_consen 88 TFIQGDSIDPE 98 (206)
T ss_dssp EEEES-SSSTH
T ss_pred EEEECCCCCHH
Confidence 99999987654
No 289
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=85.17 E-value=1.2 Score=40.23 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=35.5
Q ss_pred EEEcCChHHHHHHHHHHHHhC---CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceee
Q 014571 290 VAVDRSHNKVMDIQKLAAEMG---LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTS 351 (422)
Q Consensus 290 ~A~D~s~~rl~~l~~~l~r~g---~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLv 351 (422)
.|+|.|+.+++.++++.+..+ ..+|+++++|+..++.. .+.||.|++
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---------------~~~fD~v~~ 50 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---------------DCEFDAVTM 50 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---------------CCCeeEEEe
Confidence 479999999999988765432 35799999999875421 346898885
No 290
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=84.59 E-value=1.6 Score=42.72 Aligned_cols=20 Identities=50% Similarity=0.657 Sum_probs=17.6
Q ss_pred EEeecCCCCHHHHHHHHHHH
Q 014571 48 IRVNTLKTTTDDVIQKLLAI 67 (422)
Q Consensus 48 ~Rvnt~~~~~~~~~~~l~~~ 67 (422)
|||||+|+|++++++.|.+.
T Consensus 1 ~RvN~lk~~~~~~~~~l~~~ 20 (264)
T TIGR00446 1 IRVNTLKISVADLLQRLENR 20 (264)
T ss_pred CeecCCCCCHHHHHHHHHhC
Confidence 69999999999999988644
No 291
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=84.41 E-value=6 Score=41.03 Aligned_cols=87 Identities=10% Similarity=0.071 Sum_probs=64.4
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HHHhC---C--cceEEEecchhhhhhccCCC
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEMG---L--KCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~r~g---~--~nv~~~~~Da~~~~~~~~~~ 331 (422)
.+.-++||=++.|-|--..++... ..-++|+-+|.++++++..+++ ++..+ + +.++++..|+..+....
T Consensus 287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a--- 362 (508)
T COG4262 287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA--- 362 (508)
T ss_pred ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence 355678999999988766666655 3368999999999999999844 34432 2 45899999999886432
Q ss_pred CCCccccCCCCCCCCCceeecCCccccCc
Q 014571 332 NDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
.+.||.|++|-|=-.+-+
T Consensus 363 -----------~~~fD~vIVDl~DP~tps 380 (508)
T COG4262 363 -----------ADMFDVVIVDLPDPSTPS 380 (508)
T ss_pred -----------cccccEEEEeCCCCCCcc
Confidence 357999999987555433
No 292
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=83.95 E-value=2.2 Score=42.31 Aligned_cols=70 Identities=24% Similarity=0.274 Sum_probs=49.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~ 338 (422)
+.||..-.|++|+|||-|-++... .-.|+|+|.-+ +.+++-..| .|+-...|+.++-..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~----------- 267 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT----------- 267 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC-----------
Confidence 468999999999999999887765 57999999763 223333333 477777888876421
Q ss_pred CCCCCCCCCceeecC
Q 014571 339 NSKDNNYITSQTSDS 353 (422)
Q Consensus 339 ~~~~~~~FD~VLvDa 353 (422)
....|...||-
T Consensus 268 ----r~~idWmVCDm 278 (358)
T COG2933 268 ----RSNIDWMVCDM 278 (358)
T ss_pred ----CCCCceEEeeh
Confidence 23467777774
No 293
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=82.11 E-value=5.7 Score=31.86 Aligned_cols=58 Identities=28% Similarity=0.240 Sum_probs=39.4
Q ss_pred EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
++|++||+|..+ .++........++++|.+..++...+......+...+.+...|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence 999999999977 5555533224889999999999885554443222225666666554
No 294
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=81.40 E-value=4.5 Score=41.40 Aligned_cols=52 Identities=23% Similarity=0.298 Sum_probs=40.3
Q ss_pred hcCCCCCCeEEEecCC-CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 256 ALDPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAg-pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
..+.+||++|+=.++| -|.-+.++|..|+ .+|+|+|++++|++.+++ +|.+.
T Consensus 161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~ 213 (339)
T COG1064 161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADH 213 (339)
T ss_pred hcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcE
Confidence 3568899999887776 4456777777775 899999999999987765 67654
No 295
>PRK00536 speE spermidine synthase; Provisional
Probab=79.18 E-value=9.9 Score=37.53 Aligned_cols=76 Identities=11% Similarity=-0.060 Sum_probs=53.9
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCC
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNES 331 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~ 331 (422)
..-|. ..+||=++.|-||-...+.+. + .+|+-+|+++..++..++-+-.+ ++ ++++++.. +.
T Consensus 68 ~~h~~-pk~VLIiGGGDGg~~REvLkh--~-~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~----~~------ 133 (262)
T PRK00536 68 CTKKE-LKEVLIVDGFDLELAHQLFKY--D-THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ----LL------ 133 (262)
T ss_pred hhCCC-CCeEEEEcCCchHHHHHHHCc--C-CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh----hh------
Confidence 33344 479999999999999998887 2 49999999999999999855443 23 34555531 10
Q ss_pred CCCccccCCCCCCCCCceeecC
Q 014571 332 NDEPNMCNSKDNNYITSQTSDS 353 (422)
Q Consensus 332 ~~~~~~~~~~~~~~FD~VLvDa 353 (422)
....+.||+|++|.
T Consensus 134 --------~~~~~~fDVIIvDs 147 (262)
T PRK00536 134 --------DLDIKKYDLIICLQ 147 (262)
T ss_pred --------hccCCcCCEEEEcC
Confidence 01135799999994
No 296
>PRK08557 hypothetical protein; Provisional
Probab=78.11 E-value=6.1 Score=41.61 Aligned_cols=152 Identities=18% Similarity=0.228 Sum_probs=85.0
Q ss_pred CCEEEEccccHHHHHcCCccccCceeeccC--CccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSS--HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL 200 (422)
Q Consensus 123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~--~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v 200 (422)
.+.|+|+. ..-.+.|+.|...+|..+.. +++.||.|.+. .+-
T Consensus 77 ~~~~~~~~--~~~~~~g~~v~~~~~~~~~~~~~~~~~~~v~~~----------------------------------~~~ 120 (417)
T PRK08557 77 EPKIKLKP--TKRRLKGKYIKEELIENPEELNEILENDYVGVE----------------------------------IGN 120 (417)
T ss_pred Cceeeecc--cccccCCccccccccccccccccCCCCCEEEEe----------------------------------cCC
Confidence 45667764 44466999999999998887 89999977776 145
Q ss_pred EEEEccCccCHHHHhcccCcceeeccccccCCCCcccc-ccceEEEeChhH---HHHHHhcCCCC--CCeEEEecCCCCh
Q 014571 201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV-LEGEIFLQNLPS---IVTAHALDPQK--GERILDMCAAPGG 274 (422)
Q Consensus 201 ~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~-~~G~~~~Qd~~S---~lv~~~L~p~p--g~~VLD~CAgpGg 274 (422)
++|+|+++++...+.....|-.. +.+.+.++ +...-.++..-. .++-.+++--+ +..|+ .|=.||
T Consensus 121 ~~gvg~~~~~~~k~~~~~~~~~~-------~~~~~~~~i~~n~~~l~~~e~~ai~~i~~~~~~~~~~~~~i~--vsfSGG 191 (417)
T PRK08557 121 FLGVGVKKEDRIKIKDLSLKKEL-------DFEKIEDYLEKNKERIEKLEENSLSILKDYIEKYKNKGYAIN--ASFSGG 191 (417)
T ss_pred EEEEEEeecceEEEEecccCCCC-------CcccHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCcEEE--EEcCCc
Confidence 88999888865554443333211 11111111 001111122111 11222222122 23333 556788
Q ss_pred hHH----HHHhccCCCcEEEEEcCC---hHHHHHHHHHHHHhCCcceEEEecc
Q 014571 275 KTT----AIASLLRDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLD 320 (422)
Q Consensus 275 KT~----~la~l~~~~g~V~A~D~s---~~rl~~l~~~l~r~g~~nv~~~~~D 320 (422)
|-. +++..+.+.-.|+-+|.- +.-++.+++..+++|++ +.++..+
T Consensus 192 KDS~vlL~L~~~~~~~i~vvfvDTG~efpET~e~ve~v~~~ygl~-i~v~~~~ 243 (417)
T PRK08557 192 KDSSVSTLLAKEVIPDLEVIFIDTGLEYPETINYVKDFAKKYDLN-LDTLDGD 243 (417)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCCCHHHHHHHHHHHHHhCCC-EEEEech
Confidence 843 344443445678888743 56677788888889875 5555454
No 297
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=76.84 E-value=9.1 Score=37.54 Aligned_cols=63 Identities=14% Similarity=0.078 Sum_probs=44.9
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
..+..+|+|++||--=.++...... +....+|.|++...++.+..-+..+|.. ..+...|...
T Consensus 103 ~~~p~sVlDigCGlNPlalp~~~~~-~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl~~ 165 (251)
T PF07091_consen 103 IPPPDSVLDIGCGLNPLALPWMPEA-PGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDLLS 165 (251)
T ss_dssp S---SEEEEET-TTCHHHHHTTTSS-TT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-TTT
T ss_pred CCCCchhhhhhccCCceehhhcccC-CCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeeeec
Confidence 3457899999999888777666543 3569999999999999999999999963 5565556543
No 298
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=75.62 E-value=7.7 Score=37.16 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=52.4
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-------CcceEEEecchhhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-------LKCITTYKLDALKAV 325 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-------~~nv~~~~~Da~~~~ 325 (422)
--.+.|++||=||....++.+. +...|+++|+..+-.+-.+++++.++ +.|+.+...++.++.
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~f-PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~l 130 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKF-PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFL 130 (249)
T ss_pred cceEEeeccCccchhhhccccC-ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhc
Confidence 3468999999999999999986 46799999999888888888887776 678888888887764
No 299
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=74.73 E-value=5.6 Score=42.09 Aligned_cols=58 Identities=16% Similarity=0.098 Sum_probs=47.8
Q ss_pred eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571 264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK 323 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~ 323 (422)
-|||+++|+|-.+...+..+. -.|+|+|.-..|...+++-..+.|. ++|.++.--++.
T Consensus 69 ~vLdigtGTGLLSmMAvraga--D~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrSte 127 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGA--DSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTE 127 (636)
T ss_pred EEEEccCCccHHHHHHHHhcC--CeEEeehhhchHHHHHHHHHhcCCCccceeeeccccce
Confidence 489999999998887777753 4699999999999999999999997 457776654443
No 300
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=73.30 E-value=19 Score=35.85 Aligned_cols=75 Identities=16% Similarity=0.112 Sum_probs=46.9
Q ss_pred CeEEEecCCCChhHHHHHh-ccCCCcEEEEEcCChHHHHHHHHHHH-HhCC-cceEEEecchhhhhhccCCCCCCccccC
Q 014571 263 ERILDMCAAPGGKTTAIAS-LLRDEGEVVAVDRSHNKVMDIQKLAA-EMGL-KCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~-l~~~~g~V~A~D~s~~rl~~l~~~l~-r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.+|+=+++||=-.|..+.. ..+....|+++|+++..++..++.++ ..|+ ..+.++.+|+......
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~d------------ 189 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYD------------ 189 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG------------
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccc------------
Confidence 4999999999888876654 33445789999999999999999888 5665 4599999998754321
Q ss_pred CCCCCCCCceeec
Q 014571 340 SKDNNYITSQTSD 352 (422)
Q Consensus 340 ~~~~~~FD~VLvD 352 (422)
-..||.|++-
T Consensus 190 ---l~~~DvV~lA 199 (276)
T PF03059_consen 190 ---LKEYDVVFLA 199 (276)
T ss_dssp -------SEEEE-
T ss_pred ---cccCCEEEEh
Confidence 1357989883
No 301
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=72.95 E-value=23 Score=34.11 Aligned_cols=88 Identities=16% Similarity=0.136 Sum_probs=58.4
Q ss_pred HHHHhcCCCCCCeEEEecCCCCh--hHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhh-hhh
Q 014571 252 VTAHALDPQKGERILDMCAAPGG--KTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK-AVR 326 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGg--KT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~-~~~ 326 (422)
+++.+..=..-..+++.|++-|. -|+.||... .-.|+++++-.++..+...++.+..+|+.+ ++++.+|+.. ...
T Consensus 32 fISAlAAG~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~ 111 (218)
T PF07279_consen 32 FISALAAGWNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMP 111 (218)
T ss_pred HHHHHhccccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHh
Confidence 34333333345678999776443 344444332 236899999999999999999999999865 6888888543 322
Q ss_pred ccCCCCCCccccCCCCCCCCCceeecCC
Q 014571 327 RKNESNDEPNMCNSKDNNYITSQTSDSM 354 (422)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaP 354 (422)
. ....|.+++|.=
T Consensus 112 ~---------------~~~iDF~vVDc~ 124 (218)
T PF07279_consen 112 G---------------LKGIDFVVVDCK 124 (218)
T ss_pred h---------------ccCCCEEEEeCC
Confidence 1 123688888853
No 302
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=72.14 E-value=9.6 Score=38.95 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=40.2
Q ss_pred HHHhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571 253 TAHALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~ 305 (422)
+.....+++|++||..++|+ |--+.++|+.++ ...|+++|.++.|++.+++.
T Consensus 176 ~l~~~~~~~g~~VlV~g~G~vG~~~~~la~~~g-~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 176 AAELAEVKPGDTVAVWGCGPVGLFAARSAKLLG-AERVIAIDRVPERLEMARSH 228 (386)
T ss_pred HHhhccCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHc
Confidence 33566788999999997766 666777888764 34699999999998887763
No 303
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=70.80 E-value=12 Score=36.15 Aligned_cols=65 Identities=15% Similarity=0.107 Sum_probs=54.5
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhh
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV 325 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~ 325 (422)
+.|.++.|+||==|--...+.+. +....++|.|+++.-++.+.++.++.++ +.+++..+|+....
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~-~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKN-NPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhc-CCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 46777999999988888777765 3457999999999999999999999997 56999999986543
No 304
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=70.39 E-value=18 Score=36.47 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=84.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCCCCCcc
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNESNDEPN 336 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~~~~~~ 336 (422)
...+||=++-|-||.--..+.. ..-+.|.-+|++..-++.-++-+..+ |. +.|.+..+|+..+....
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-------- 191 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-------- 191 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh--------
Confidence 4568999999999976655544 34578999999998888877776654 33 45899999999876432
Q ss_pred ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh-ccceeccEEEehhhHHHHHh
Q 014571 337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV-VGLRIQKVLVLTALIESFLM 415 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a-~~lr~~~~~~~t~~~~~~~~ 415 (422)
..+.||+|++|.. +|. +. -++.-|+.+-..+ -.||-+||+++-+ |+||.
T Consensus 192 -----~~~~~dVii~dss------------dpv--------gp---a~~lf~~~~~~~v~~aLk~dgv~~~q~--ec~wl 241 (337)
T KOG1562|consen 192 -----KENPFDVIITDSS------------DPV--------GP---ACALFQKPYFGLVLDALKGDGVVCTQG--ECMWL 241 (337)
T ss_pred -----ccCCceEEEEecC------------Ccc--------ch---HHHHHHHHHHHHHHHhhCCCcEEEEec--ceehH
Confidence 1567999999731 122 22 3666777666666 4589999999877 99997
Q ss_pred h
Q 014571 416 L 416 (422)
Q Consensus 416 ~ 416 (422)
+
T Consensus 242 ~ 242 (337)
T KOG1562|consen 242 H 242 (337)
T ss_pred H
Confidence 5
No 305
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=69.98 E-value=1.2 Score=42.62 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=44.0
Q ss_pred ccceEEEeChhHHHHHHhcC---CC---CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 239 LEGEIFLQNLPSIVTAHALD---PQ---KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 239 ~~G~~~~Qd~~S~lv~~~L~---p~---pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
..|..++-++. |+. .+|. |. ...++||++||-|-.|.+++-.. .+|+|.|.|..|..++++
T Consensus 86 grGsMFifSe~-QF~-klL~i~~p~w~~~~~~lLDlGAGdGeit~~m~p~f---eevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 86 GRGSMFIFSEE-QFR-KLLVIGGPAWGQEPVTLLDLGAGDGEITLRMAPTF---EEVYATELSWTMRDRLKK 152 (288)
T ss_pred ccCceEEecHH-HHH-HHHhcCCCccCCCCeeEEeccCCCcchhhhhcchH---HHHHHHHhhHHHHHHHhh
Confidence 46766666654 433 3332 22 34689999999999999998764 479999999988777664
No 306
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=63.92 E-value=14 Score=37.76 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=43.6
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
+....+++||++|.=.+-|.=|.+..+.....+.++|+++|+++.|.+.++ .+|.+
T Consensus 184 a~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak----~fGaT 239 (375)
T KOG0022|consen 184 AWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAK----EFGAT 239 (375)
T ss_pred hhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHH----hcCcc
Confidence 456778999999988877766666666555567789999999999998766 47764
No 307
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=63.81 E-value=40 Score=37.08 Aligned_cols=67 Identities=18% Similarity=0.129 Sum_probs=47.4
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCC--------cceEEEecchhhhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGL--------KCITTYKLDALKAV 325 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~--------~nv~~~~~Da~~~~ 325 (422)
+.+.|.+|| +..|.|+...++++.+ ....+|++++++..+++.+.+.+...++ .++.++.+|..+..
T Consensus 76 ~~~~gKvVL-VTGATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~e 151 (576)
T PLN03209 76 DTKDEDLAF-VAGATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPD 151 (576)
T ss_pred ccCCCCEEE-EECCCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHH
Confidence 445676777 5566788888888765 3345899999999998877766554321 35788888987643
No 308
>PLN02540 methylenetetrahydrofolate reductase
Probab=63.78 E-value=13 Score=40.65 Aligned_cols=62 Identities=18% Similarity=0.216 Sum_probs=53.0
Q ss_pred CCeEEEecCCCCh----hHHHHHhccCCC------cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 262 GERILDMCAAPGG----KTTAIASLLRDE------GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 262 g~~VLD~CAgpGg----KT~~la~l~~~~------g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+-..+|+.-|+|| +|+.+|..+.+. .++.|.|.+...++..-..+..+|++||-++.+|-.+
T Consensus 28 ~P~FisVT~gAgGst~~~Tl~la~~lq~~~Gie~i~HLTCrd~n~~~L~~~L~~a~~~GIrNILALrGDpp~ 99 (565)
T PLN02540 28 GPLFCDITWGAGGSTADLTLDIANRMQNMICVETMMHLTCTNMPVEKIDHALETIKSNGIQNILALRGDPPH 99 (565)
T ss_pred CCCEEEeCCCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 4578999999998 688888776543 5899999999999999999999999999999999653
No 309
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=63.14 E-value=14 Score=32.22 Aligned_cols=39 Identities=18% Similarity=0.188 Sum_probs=27.2
Q ss_pred EecCCCC--hhHHHHH-hccCCCcEEEEEcCChHHHHHHHHH
Q 014571 267 DMCAAPG--GKTTAIA-SLLRDEGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 267 D~CAgpG--gKT~~la-~l~~~~g~V~A~D~s~~rl~~l~~~ 305 (422)
|++|.-| ..+..++ +...+.++|+++|.++..++.++++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8899999 6666664 2456678999999999999999999
No 310
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=62.92 E-value=3.2 Score=44.38 Aligned_cols=54 Identities=15% Similarity=-0.076 Sum_probs=43.3
Q ss_pred CCCCchhhhhhhcccC-C--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceee
Q 014571 171 LDGGWGLGITRGTVLQ-G--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVD 224 (422)
Q Consensus 171 ~~p~W~~~~~r~~~~~-~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~ 224 (422)
.+|.|+++.++..+.. . .++.++++++++.+||+|+.+++.+++.+ ...|+.++
T Consensus 3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~~~lRvN~lK~~~~~~~~~L~~~g~~~~ 61 (470)
T PRK11933 3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLRRSIRVNTLKISVADFLQLMAPYGWTLT 61 (470)
T ss_pred cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCcee
Confidence 4799999999988863 2 45778999999999999999999998775 34566554
No 311
>PRK05599 hypothetical protein; Provisional
Probab=61.92 E-value=20 Score=33.96 Aligned_cols=57 Identities=18% Similarity=0.212 Sum_probs=44.5
Q ss_pred ecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
++.|.+|....+|..+....+|+..+++..+++.+.+.++..|-..+.++..|.+..
T Consensus 5 ItGas~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~ 61 (246)
T PRK05599 5 ILGGTSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDL 61 (246)
T ss_pred EEeCccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCH
Confidence 455677888888876655678999999999999888888777655577888887764
No 312
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=61.78 E-value=17 Score=37.36 Aligned_cols=56 Identities=14% Similarity=0.201 Sum_probs=42.7
Q ss_pred HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
+...+++++|++|.=.++|-=|-+......+-+.++|+|+|+++.|++.++ ++|.+
T Consensus 177 v~nta~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~----~fGAT 232 (366)
T COG1062 177 VVNTAKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAK----KFGAT 232 (366)
T ss_pred hhhcccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHH----hcCCc
Confidence 567888999999888777655555555555556789999999999998766 47864
No 313
>PRK07102 short chain dehydrogenase; Provisional
Probab=61.57 E-value=25 Score=32.92 Aligned_cols=60 Identities=18% Similarity=0.218 Sum_probs=44.1
Q ss_pred eEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|+ +..|.|+-..+++..+-. ..+|+++++++.+.+.+.+.+...+-.++.++..|..+.
T Consensus 3 ~vl-ItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KIL-IIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILDT 63 (243)
T ss_pred EEE-EEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCCh
Confidence 455 456778888888876643 348999999999887776666554445788888888754
No 314
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=60.89 E-value=23 Score=33.22 Aligned_cols=63 Identities=21% Similarity=0.136 Sum_probs=45.5
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
+.++.+||= ..|.|+...+++..+.. ..+|+++|++..+++.+.+.++..+...+.++..|..
T Consensus 9 ~~~~k~vlI-tG~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILV-TGAGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEE-eCCCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 345666664 45678888888766533 3499999999999988888888777656667666664
No 315
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=58.96 E-value=33 Score=31.35 Aligned_cols=80 Identities=16% Similarity=0.102 Sum_probs=45.0
Q ss_pred CCCChhHH--HHHhccCCCcEEEEE--cCChH---HHHHHHHHHHHhCCcceE-EEecchhhhhhccCCCCCCccccCCC
Q 014571 270 AAPGGKTT--AIASLLRDEGEVVAV--DRSHN---KVMDIQKLAAEMGLKCIT-TYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 270 AgpGgKT~--~la~l~~~~g~V~A~--D~s~~---rl~~l~~~l~r~g~~nv~-~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
-|=|+.|+ .++...+....|+|. |.... |.....+|++.+.-.++. ....|++++..... .
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~-----------~ 71 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFR-----------L 71 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccc-----------c
Confidence 34555554 455554434566665 44332 223344666655333333 34558887654321 1
Q ss_pred CCCCCCceeecCCccccCc
Q 014571 342 DNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg~G~ 360 (422)
....||+|+-.-|+.|.|.
T Consensus 72 ~~~~FDrIiFNFPH~G~~~ 90 (166)
T PF10354_consen 72 KNQRFDRIIFNFPHVGGGS 90 (166)
T ss_pred cCCcCCEEEEeCCCCCCCc
Confidence 2567999999999999544
No 316
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=58.45 E-value=20 Score=37.28 Aligned_cols=62 Identities=21% Similarity=0.255 Sum_probs=44.9
Q ss_pred ccceEEEe-ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHH
Q 014571 239 LEGEIFLQ-NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (422)
Q Consensus 239 ~~G~~~~Q-d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~ 303 (422)
-.+++|-| .+-+.+=..+|++.|+++||=+++| |.-++.++ ..+..+|+|+|.++.-+..++
T Consensus 12 f~~lvY~~~WEDp~vD~~aL~i~~~d~vl~ItSa-G~N~L~yL--~~~P~~I~aVDlNp~Q~aLle 74 (380)
T PF11899_consen 12 FRGLVYAQCWEDPRVDMEALNIGPDDRVLTITSA-GCNALDYL--LAGPKRIHAVDLNPAQNALLE 74 (380)
T ss_pred ccceeeccccCCcHHHHHHhCCCCCCeEEEEccC-CchHHHHH--hcCCceEEEEeCCHHHHHHHH
Confidence 34666665 3344566788999999999999876 55566663 335689999999998776655
No 317
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=57.95 E-value=25 Score=34.70 Aligned_cols=98 Identities=16% Similarity=0.147 Sum_probs=64.0
Q ss_pred eChhHHHHHHhcC---CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 246 QNLPSIVTAHALD---PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 246 Qd~~S~lv~~~L~---p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
||.+..+...+-. ..+|.+ |+.. ||+ ....+++++.+-++.++|.+++-...++++.. +-.++.+.+.|+.
T Consensus 71 ~~lpa~l~~yl~~i~~lN~~~~-l~~Y--pGS-P~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~ 144 (279)
T COG2961 71 ADLPAELEPYLDAVRQLNPGGG-LRYY--PGS-PLLARQLLREQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGF 144 (279)
T ss_pred CCchHHHHHHHHHHHHhCCCCC-cccC--CCC-HHHHHHHcchhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcH
Confidence 6666655433222 234443 5544 443 23444556677899999999999999999987 5678999999997
Q ss_pred hhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571 323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~ 360 (422)
......-.++ ++=-.||+|||---.+.
T Consensus 145 ~~l~a~LPP~-----------erRglVLIDPPfE~~~e 171 (279)
T COG2961 145 LALKAHLPPK-----------ERRGLVLIDPPFELKDE 171 (279)
T ss_pred HHHhhhCCCC-----------CcceEEEeCCCcccccH
Confidence 6544322221 22257999999877643
No 318
>PRK07904 short chain dehydrogenase; Provisional
Probab=56.87 E-value=30 Score=33.00 Aligned_cols=63 Identities=16% Similarity=0.150 Sum_probs=46.3
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCC--cEEEEEcCChHH-HHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNK-VMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~--g~V~A~D~s~~r-l~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.+|| ++.|.||...++++.+-.+ ..|++++++..+ ++.+.+.++..+..++.++.+|....
T Consensus 7 ~~~~vl-ItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~ 72 (253)
T PRK07904 7 NPQTIL-LLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDT 72 (253)
T ss_pred CCcEEE-EEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCCh
Confidence 455666 4566788899999765333 489999999876 77777777776655788898987653
No 319
>PRK06197 short chain dehydrogenase; Provisional
Probab=56.56 E-value=55 Score=31.99 Aligned_cols=63 Identities=19% Similarity=0.088 Sum_probs=45.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHh-CCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~~~Da~~~ 324 (422)
.|.+|| +..|.||...+++..+.. ..+|+.++++..+.+.+.+.+... +-.++.++..|....
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 79 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSL 79 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCH
Confidence 455666 777889999999886543 348999999988887766666543 223577888887754
No 320
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=56.30 E-value=24 Score=35.07 Aligned_cols=61 Identities=25% Similarity=0.329 Sum_probs=44.2
Q ss_pred EEeChhHH-HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHH
Q 014571 244 FLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 244 ~~Qd~~S~-lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~ 305 (422)
.+|-+-++ +.-++-.++||+.|| +-||.||-.+.+.|+++- ..++++.-.+..|.+.+++|
T Consensus 128 llq~lTAy~ll~e~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 128 LLQGLTAYMLLFEAYNVKPGHTVL-VHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred HHHHHHHHHHHHHhcCCCCCCEEE-EEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhc
Confidence 44554444 344566789999999 456778888888777643 35888999999999888775
No 321
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=54.65 E-value=16 Score=30.35 Aligned_cols=69 Identities=19% Similarity=0.196 Sum_probs=47.0
Q ss_pred CCCChhHHHHHhccCCCc-EEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCc
Q 014571 270 AAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348 (422)
Q Consensus 270 AgpGgKT~~la~l~~~~g-~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~ 348 (422)
+|-|..+.++++.+...+ .|+.+|.++.+++.+++ .| +.++.+|++....-... .-...+.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~----~~---~~~i~gd~~~~~~l~~a-----------~i~~a~~ 65 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELRE----EG---VEVIYGDATDPEVLERA-----------GIEKADA 65 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH----TT---SEEEES-TTSHHHHHHT-----------TGGCESE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHh----cc---cccccccchhhhHHhhc-----------CccccCE
Confidence 577888999998876667 89999999999877765 33 66888998865332111 1234578
Q ss_pred eeecCCcc
Q 014571 349 QTSDSMKL 356 (422)
Q Consensus 349 VLvDaPCS 356 (422)
|++..+..
T Consensus 66 vv~~~~~d 73 (116)
T PF02254_consen 66 VVILTDDD 73 (116)
T ss_dssp EEEESSSH
T ss_pred EEEccCCH
Confidence 88866544
No 322
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=52.59 E-value=17 Score=34.71 Aligned_cols=43 Identities=16% Similarity=0.171 Sum_probs=37.7
Q ss_pred HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChH
Q 014571 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~ 297 (422)
.+..++||.+|+|+-=|-|-.|..++..++++|.|+++=..+.
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~ 84 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAEL 84 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhh
Confidence 3557899999999999999999999999999999999855544
No 323
>PRK12939 short chain dehydrogenase; Provisional
Probab=52.55 E-value=43 Score=31.13 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=46.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.++| +..|.|+-..+++..+.. ..+|+++++++.+++.+.+.++..+ .++.++..|.++.
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADP 68 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 356676 667789999999876643 3589999999998888877776555 3588888888754
No 324
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=52.12 E-value=33 Score=34.94 Aligned_cols=60 Identities=25% Similarity=0.275 Sum_probs=41.8
Q ss_pred EEeChhHHH--H-HHhcCCCCCCeEEEecCCCChhH-HHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 244 FLQNLPSIV--T-AHALDPQKGERILDMCAAPGGKT-TAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 244 ~~Qd~~S~l--v-~~~L~p~pg~~VLD~CAgpGgKT-~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
.+.|+-+.- . +.....+++.+|+=++|||=|-. .++++.+ +..+|+++|+++.|++.+++
T Consensus 148 al~epla~~~~~~a~~~~~~~~~~V~V~GaGpIGLla~~~a~~~-Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 148 ALTEPLATAYHGHAERAAVRPGGTVVVVGAGPIGLLAIALAKLL-GASVVIVVDRSPERLELAKE 211 (350)
T ss_pred hhcChhhhhhhhhhhccCCCCCCEEEEECCCHHHHHHHHHHHHc-CCceEEEeCCCHHHHHHHHH
Confidence 344554443 2 33333455669999999996665 5555554 46899999999999998886
No 325
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=51.80 E-value=44 Score=35.00 Aligned_cols=49 Identities=16% Similarity=0.095 Sum_probs=35.4
Q ss_pred HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHH
Q 014571 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI 302 (422)
Q Consensus 252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l 302 (422)
++..+.+--+-+.|+|++||+|--+..|+-. .+-.|+|+|-|..-.+++
T Consensus 144 lvSsi~~f~gi~~vvD~GaG~G~LSr~lSl~--y~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 144 LVSSISDFTGIDQVVDVGAGQGHLSRFLSLG--YGLSVKAIEGSQRLVERA 192 (476)
T ss_pred HHHHHHhhcCCCeeEEcCCCchHHHHHHhhc--cCceEEEeccchHHHHHH
Confidence 4444445556678999999999888777644 467999999995544433
No 326
>PRK06194 hypothetical protein; Provisional
Probab=51.74 E-value=42 Score=32.23 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=44.9
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.||...+++..+.. ..+|+.+|++..+++...+.+...|. ++.++.+|.+..
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~ 67 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDA 67 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCH
Confidence 55677 777889999999876543 45899999998888777666655443 477788887653
No 327
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=50.31 E-value=20 Score=35.11 Aligned_cols=76 Identities=14% Similarity=0.109 Sum_probs=40.7
Q ss_pred cCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCc
Q 014571 269 CAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITS 348 (422)
Q Consensus 269 CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~ 348 (422)
..=||. -..++++++.+-+.+.+|.++.-.+.+++++++ -+++++...|+.......-.+.. +=-.
T Consensus 63 ~~YPGS-P~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~allPP~~-----------rRgl 128 (245)
T PF04378_consen 63 RFYPGS-PAIAARLLREQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALLPPPE-----------RRGL 128 (245)
T ss_dssp -EEE-H-HHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-S-TT-----------S-EE
T ss_pred CcCCCC-HHHHHHhCCccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhCCCCC-----------CCeE
Confidence 345775 233445667788999999999999999998775 35799999999875443322211 1146
Q ss_pred eeecCCcccc
Q 014571 349 QTSDSMKLHK 358 (422)
Q Consensus 349 VLvDaPCSg~ 358 (422)
||+|||---.
T Consensus 129 VLIDPpYE~~ 138 (245)
T PF04378_consen 129 VLIDPPYEQK 138 (245)
T ss_dssp EEE-----ST
T ss_pred EEECCCCCCc
Confidence 9999996654
No 328
>PRK07890 short chain dehydrogenase; Provisional
Probab=49.98 E-value=49 Score=31.02 Aligned_cols=62 Identities=15% Similarity=0.216 Sum_probs=45.8
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.+|| +..|.|+...+++..+- ...+|+.+++++.+++.+.+.++..+. ++..+..|.+..
T Consensus 4 ~~k~vl-ItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 66 (258)
T PRK07890 4 KGKVVV-VSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDE 66 (258)
T ss_pred CCCEEE-EECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCH
Confidence 345666 66778888998887653 345899999999988888877766553 477888887653
No 329
>PRK07326 short chain dehydrogenase; Provisional
Probab=47.23 E-value=50 Score=30.49 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+...+++..+.. ..+|+++++++.+.+.+.+.+... ..+.++.+|....
T Consensus 6 ~~~il-ItGatg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~~ 66 (237)
T PRK07326 6 GKVAL-ITGGSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRDE 66 (237)
T ss_pred CCEEE-EECCCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCCH
Confidence 55666 445688888888876533 358999999998887776665443 4577788886643
No 330
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=46.86 E-value=28 Score=34.50 Aligned_cols=75 Identities=17% Similarity=0.193 Sum_probs=46.8
Q ss_pred HHHhcCCCCC-CeEEEecCC--CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571 253 TAHALDPQKG-ERILDMCAA--PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327 (422)
Q Consensus 253 v~~~L~p~pg-~~VLD~CAg--pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~ 327 (422)
+++.|.-+-| ...||++|| +-+.+=++|+...+.++|+-+|.++--+.-.+..+....-....++.+|.+.+...
T Consensus 59 aVr~la~~~GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~p~~i 136 (267)
T PF04672_consen 59 AVRYLAEEAGIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRDPEAI 136 (267)
T ss_dssp HHHHHHCTT---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-HHHH
T ss_pred HHHHHHHhcCcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCCHHHH
Confidence 3444444423 469999999 34567789998889999999999999888888776654322388999999986543
No 331
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=46.64 E-value=45 Score=32.42 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=38.6
Q ss_pred CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
-.+|+.|||-.+|.|....+..++ + -..+++|+++.-++.+.+++.+.-
T Consensus 220 s~~~diVlDpf~GsGtt~~aa~~~-~--r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAAKNL-G--RRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHHHHc-C--CceEEEecCHHHHHHHHHHHHhhc
Confidence 568999999999999744444333 2 368889999999999999888753
No 332
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=46.46 E-value=22 Score=33.50 Aligned_cols=44 Identities=20% Similarity=0.260 Sum_probs=30.8
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC--------CcEEEEEcCChHHHHHHHH
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD--------EGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~--------~g~V~A~D~s~~rl~~l~~ 304 (422)
+.-+||.++|++|-=+--||-++.. +-+|+|.|+|+..++.+++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~ 82 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA 82 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh
Confidence 4468999999999765555543321 3599999999999988763
No 333
>PRK08643 acetoin reductase; Validated
Probab=45.94 E-value=59 Score=30.51 Aligned_cols=59 Identities=24% Similarity=0.134 Sum_probs=44.0
Q ss_pred eEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
++| +..|.|+...++++.+- ...+|+.++++..+++.+.+.+...+ .++.++..|.+..
T Consensus 4 ~~l-ItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 63 (256)
T PRK08643 4 VAL-VTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDR 63 (256)
T ss_pred EEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 444 66778888888887653 34589999999999888888777665 3577788887754
No 334
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=45.68 E-value=64 Score=30.07 Aligned_cols=61 Identities=20% Similarity=0.203 Sum_probs=45.4
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+-..+++..+.. ..+|+.+++++.+.+.+...++..+ .++.++.+|....
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 65 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDE 65 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 44555 677789999999886543 3589999999999888877776655 3577788887643
No 335
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=45.48 E-value=47 Score=33.25 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=32.8
Q ss_pred CCCCCCeEEEecCCCChhH-HHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 258 DPQKGERILDMCAAPGGKT-TAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT-~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
.+++|++||=.+||+=|.. .+++..+.+..+|+++|.++.|++.+++
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4688999998876554432 3445543233589999999999988764
No 336
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=44.61 E-value=62 Score=32.33 Aligned_cols=50 Identities=24% Similarity=0.349 Sum_probs=36.8
Q ss_pred cCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 257 L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
..+++|++||=.+||+ |.-+.++|..++ .+|+++|.++.|++.++ .+|.+
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMG--AAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH----HhCCc
Confidence 5678999999887755 445566677664 47999999999987664 45764
No 337
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=43.25 E-value=51 Score=34.43 Aligned_cols=51 Identities=22% Similarity=0.123 Sum_probs=35.5
Q ss_pred CCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccccCCCCCcEEEEe
Q 014571 43 SCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVK 106 (422)
Q Consensus 43 p~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ 106 (422)
|.--++|+||++.+.+|.+..|..+=..- + . .-..-..+-+|..+.+|.++
T Consensus 129 ~~pr~vRINtlk~~~~e~~~~L~~e~~~~-----~--~------~l~p~~~~~D~~~~~ll~~~ 179 (413)
T KOG2360|consen 129 PLPRYVRINTLKGTTDEALDYLDYEKWKM-----I--T------ELKPDEFYVDPHVENLIIFP 179 (413)
T ss_pred CCceeEEeecccCchhhhhhhhhhhhhhh-----h--h------hcCCcceeccccchhhcccC
Confidence 55568999999999999999887652220 0 0 01124567788888888887
No 338
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=43.00 E-value=70 Score=29.98 Aligned_cols=61 Identities=16% Similarity=0.164 Sum_probs=45.9
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.++| +..|.|+-..+++..+. ....|+++++++.+.+.+.+.++..|. ++.++.+|.+..
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~ 68 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNE 68 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCH
Confidence 55677 77888898888887653 345899999999988888887776653 467778887654
No 339
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=42.91 E-value=47 Score=32.60 Aligned_cols=87 Identities=15% Similarity=0.066 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCcc-eEEEec-chhhhhhccCCCCCCcc
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLKC-ITTYKL-DALKAVRRKNESNDEPN 336 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~n-v~~~~~-Da~~~~~~~~~~~~~~~ 336 (422)
.++-++||++-|.--.--.+...+- .-+-++-|+++.-++.++.++... ++.+ |++..- |.... .+..
T Consensus 77 ~~~i~~LDIGvGAnCIYPliG~~eY-gwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~i------f~gi-- 147 (292)
T COG3129 77 GKNIRILDIGVGANCIYPLIGVHEY-GWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAI------FNGI-- 147 (292)
T ss_pred cCceEEEeeccCcccccccccceee-cceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCcccc------cccc--
Confidence 3566889997665433222322221 347788999999999999998876 6644 665543 22221 1111
Q ss_pred ccCCCCCCCCCceeecCCcccc
Q 014571 337 MCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 337 ~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
....+.||.++|.||=-++
T Consensus 148 ---ig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 148 ---IGKNERYDATLCNPPFHDS 166 (292)
T ss_pred ---ccccceeeeEecCCCcchh
Confidence 1124679999999997664
No 340
>PRK06181 short chain dehydrogenase; Provisional
Probab=41.82 E-value=90 Score=29.41 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=43.0
Q ss_pred eEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|| +..|.|+...++++.+ ....+|+++++++.+.+.+.+.++..+ .++.++..|.+..
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG-GEALVVPTDVSDA 62 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 455 5667888888887654 334699999999988887777776655 3577778887653
No 341
>PRK07478 short chain dehydrogenase; Provisional
Probab=41.73 E-value=78 Score=29.71 Aligned_cols=61 Identities=18% Similarity=0.174 Sum_probs=44.5
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.++| +..|.||...+++..+. ...+|+..++++.+++.+.+.++..|. ++.++..|....
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 67 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDE 67 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCH
Confidence 45566 56667888888876553 345899999999999888887777663 467777787654
No 342
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=41.27 E-value=49 Score=36.04 Aligned_cols=63 Identities=17% Similarity=0.120 Sum_probs=49.2
Q ss_pred eEEEecCCCC---hhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhc
Q 014571 264 RILDMCAAPG---GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRR 327 (422)
Q Consensus 264 ~VLD~CAgpG---gKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~ 327 (422)
+|+=++||.| .+++..|+....+-+++|+|.+++.+..++. .+..+. ..|+++..|.|++..+
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap 436 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP 436 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc
Confidence 4667888888 4567777777778899999999999999887 344444 4599999999998753
No 343
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=41.24 E-value=68 Score=29.37 Aligned_cols=87 Identities=9% Similarity=0.003 Sum_probs=48.7
Q ss_pred hHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571 249 PSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327 (422)
Q Consensus 249 ~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~ 327 (422)
+..++-.+++ ..++.+|+=+||=+--.+ +......+..++-+|.+. +.+.+|-+ .++..|...+..-
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~--l~~~~~~~~~~~Lle~D~--------RF~~~~~~--~F~fyD~~~p~~~ 79 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEA--LKKESKPRIQSFLLEYDR--------RFEQFGGD--EFVFYDYNEPEEL 79 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHH--HHhhcCCCccEEEEeecc--------hHHhcCCc--ceEECCCCChhhh
Confidence 3344444444 245678887776443322 222223466888889883 33444432 4556676553221
Q ss_pred cCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571 328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358 (422)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~ 358 (422)
+ ....+.||+|++|||=-..
T Consensus 80 ----~-------~~l~~~~d~vv~DPPFl~~ 99 (162)
T PF10237_consen 80 ----P-------EELKGKFDVVVIDPPFLSE 99 (162)
T ss_pred ----h-------hhcCCCceEEEECCCCCCH
Confidence 1 1225689999999997443
No 344
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=40.87 E-value=93 Score=30.32 Aligned_cols=78 Identities=12% Similarity=0.062 Sum_probs=55.9
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
..|.+||.++-|-|-..+.+.+. +-.+-+-+|-++.-+++++...=+. -+||.++.+--..... ..
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~--~p~~H~IiE~hp~V~krmr~~gw~e-k~nViil~g~WeDvl~---~L-------- 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA--PPDEHWIIEAHPDVLKRMRDWGWRE-KENVIILEGRWEDVLN---TL-------- 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc--CCcceEEEecCHHHHHHHHhccccc-ccceEEEecchHhhhc---cc--------
Confidence 67889999999999998888776 3356677999999998888764332 2678887764443321 11
Q ss_pred CCCCCCCCceeecC
Q 014571 340 SKDNNYITSQTSDS 353 (422)
Q Consensus 340 ~~~~~~FD~VLvDa 353 (422)
..+.||.|+-|+
T Consensus 166 --~d~~FDGI~yDT 177 (271)
T KOG1709|consen 166 --PDKHFDGIYYDT 177 (271)
T ss_pred --cccCcceeEeec
Confidence 134599999985
No 345
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=40.48 E-value=36 Score=34.03 Aligned_cols=43 Identities=21% Similarity=0.175 Sum_probs=33.4
Q ss_pred CeEEEecCCCChhHHHHHhcc----C---CCcEEEEEcCChHHHHHHHHH
Q 014571 263 ERILDMCAAPGGKTTAIASLL----R---DEGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~----~---~~g~V~A~D~s~~rl~~l~~~ 305 (422)
-+||..+|++|-=.--||.++ + .+-+|+|.|+|...++.+++-
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G 166 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSG 166 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhC
Confidence 699999999997655555443 1 135899999999999998864
No 346
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=40.09 E-value=63 Score=31.78 Aligned_cols=61 Identities=16% Similarity=0.326 Sum_probs=48.4
Q ss_pred CeEEEecCCCChh----HHHHHhccCC------CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 263 ERILDMCAAPGGK----TTAIASLLRD------EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 263 ~~VLD~CAgpGgK----T~~la~l~~~------~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
-..+.++.+|||+ |..++..+.+ -.++.+.|.++..++..-..+..+|++||-++.+|...
T Consensus 29 pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL~l~GD~~~ 99 (272)
T TIGR00676 29 PDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHILALRGDPPK 99 (272)
T ss_pred CCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence 4678889999974 5556555542 24789999999999888888999999999999999753
No 347
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=39.65 E-value=94 Score=28.80 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=32.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHH
Q 014571 259 PQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303 (422)
Q Consensus 259 p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~ 303 (422)
..+|++||..++|+ |--+.+++..++ .+|++.+.++.+.+.++
T Consensus 132 ~~~~~~vli~g~~~~G~~~~~~a~~~g--~~v~~~~~~~~~~~~~~ 175 (271)
T cd05188 132 LKPGDTVLVLGAGGVGLLAAQLAKAAG--ARVIVTDRSDEKLELAK 175 (271)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEcCCHHHHHHHH
Confidence 37899999988775 555566666654 68999999998877664
No 348
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=39.37 E-value=72 Score=35.36 Aligned_cols=47 Identities=9% Similarity=0.002 Sum_probs=32.5
Q ss_pred HHHHHhcC-CCCCCeEEEecCCCChhHHHHHhcc------CC-----CcEEEEEcCChH
Q 014571 251 IVTAHALD-PQKGERILDMCAAPGGKTTAIASLL------RD-----EGEVVAVDRSHN 297 (422)
Q Consensus 251 ~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~------~~-----~g~V~A~D~s~~ 297 (422)
.+..++.. .++.-+|+|+|-|.|--++...+.. .+ .-+++++|..+-
T Consensus 46 ~l~~r~~~~~~~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~ 104 (662)
T PRK01747 46 GLPERWAEHPRRRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPL 104 (662)
T ss_pred CHHHHHhcCCCCcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCC
Confidence 34554443 2344689999999999888777654 11 358999998763
No 349
>PRK07454 short chain dehydrogenase; Provisional
Probab=39.05 E-value=69 Score=29.74 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=43.6
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.++|= ..|.|+-...++..+.. ..+|+++++++.+.+.+.+.++..+ .++.++.+|.+..
T Consensus 6 ~k~vlI-tG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 6 MPRALI-TGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CCEEEE-eCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 334554 45678888888876533 3489999999988888777776654 3577888888764
No 350
>KOG3673 consensus FtsJ-like RNA methyltransferase [RNA processing and modification]
Probab=38.68 E-value=9.7 Score=41.20 Aligned_cols=18 Identities=33% Similarity=0.623 Sum_probs=14.4
Q ss_pred EEEecCCCChhHHHHHhc
Q 014571 265 ILDMCAAPGGKTTAIASL 282 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l 282 (422)
.-||||||||.+-.+...
T Consensus 271 FaDvCAGPGGFSEYvLwR 288 (845)
T KOG3673|consen 271 FADVCAGPGGFSEYVLWR 288 (845)
T ss_pred HHhhhcCCCccchhhhhh
Confidence 468999999998776543
No 351
>PRK07024 short chain dehydrogenase; Provisional
Probab=38.41 E-value=46 Score=31.49 Aligned_cols=58 Identities=16% Similarity=0.229 Sum_probs=41.4
Q ss_pred eEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|| ++.|.||...+++..+.. ...|+.+|++..+++.+.+.+...+ ++.++..|.++.
T Consensus 4 ~vl-ItGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~ 62 (257)
T PRK07024 4 KVF-ITGASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA--RVSVYAADVRDA 62 (257)
T ss_pred EEE-EEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC--eeEEEEcCCCCH
Confidence 444 466788888888876633 3589999999988877666554333 678888888764
No 352
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.36 E-value=96 Score=28.58 Aligned_cols=59 Identities=20% Similarity=0.239 Sum_probs=41.8
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
|.+||=.+| .|+...++++.+. ...+|++.++++.+...+.+.+...+ ++.++..|.+.
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCC
Confidence 567775544 6888888887663 34589999999988887766555433 57777888764
No 353
>KOG2414 consensus Putative Xaa-Pro aminopeptidase [Amino acid transport and metabolism]
Probab=38.28 E-value=22 Score=37.36 Aligned_cols=51 Identities=12% Similarity=-0.150 Sum_probs=37.1
Q ss_pred CceeecCCccccCchhhhhhCCCCCccccccCcc-cchhHHHHHHHHHHhcc
Q 014571 347 TSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRT-CGECGMAQEEINALVVG 397 (422)
Q Consensus 347 D~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~-~~~l~~~Q~~IL~~a~~ 397 (422)
|.||+||-|.-.|-.+++.|.=.+.-.|+....+ +.-+..+|+++++.+-.
T Consensus 308 emVLvDaGcelgGYvSDITRTWP~sGkFs~~Qr~LYeavL~vq~ecik~c~~ 359 (488)
T KOG2414|consen 308 EMVLVDAGCELGGYVSDITRTWPISGKFSDAQRDLYEAVLQVQEECIKYCKP 359 (488)
T ss_pred cEEEEecCcccCceEccceeccCCCCccCcHHHHHHHHHHHHHHHHHHhhcC
Confidence 7899999999999977777766555667654433 44455688888887743
No 354
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=38.21 E-value=42 Score=28.09 Aligned_cols=35 Identities=29% Similarity=0.384 Sum_probs=28.1
Q ss_pred CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 272 PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 272 pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
-|-.+.++|..++ .+|++.|.++.|++.++ ++|.+
T Consensus 2 vG~~a~q~ak~~G--~~vi~~~~~~~k~~~~~----~~Ga~ 36 (130)
T PF00107_consen 2 VGLMAIQLAKAMG--AKVIATDRSEEKLELAK----ELGAD 36 (130)
T ss_dssp HHHHHHHHHHHTT--SEEEEEESSHHHHHHHH----HTTES
T ss_pred hHHHHHHHHHHcC--CEEEEEECCHHHHHHHH----hhccc
Confidence 3667889999876 89999999999987665 57754
No 355
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=37.86 E-value=44 Score=31.78 Aligned_cols=37 Identities=14% Similarity=0.121 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHH
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~ 300 (422)
+..+++|..||.|.-+..+.. ...+|+++|++..-+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~---~~~~vi~ND~~~~l~~ 56 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQ---PGKRVIINDINPDLIN 56 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC------SSEEEEEES-HHHHH
T ss_pred CCCEEEEEecchhHHHHHhcc---cccceeeeechHHHHH
Confidence 788999999999988776655 3578999999986443
No 356
>PRK06172 short chain dehydrogenase; Provisional
Probab=37.75 E-value=1.2e+02 Score=28.34 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=43.9
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.+||=.+ |.|+....++..+. ...+|+.+++++.+++.+.+.++..+ .++.++..|..+.
T Consensus 7 ~k~ilItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 68 (253)
T PRK06172 7 GKVALVTG-GAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRD 68 (253)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCH
Confidence 45666554 56777777776543 34589999999999888887777665 3578888888754
No 357
>PRK06914 short chain dehydrogenase; Provisional
Probab=37.74 E-value=70 Score=30.52 Aligned_cols=61 Identities=20% Similarity=0.200 Sum_probs=43.8
Q ss_pred CeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 324 (422)
.++| ++.|.|+-..+++..+ .....|+++++++.+++.+.+.++..+. .++.++..|.++.
T Consensus 4 k~~l-ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 66 (280)
T PRK06914 4 KIAI-VTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQ 66 (280)
T ss_pred CEEE-EECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCH
Confidence 3444 4567778888887654 3345899999999988888777666554 3588888888764
No 358
>PRK08251 short chain dehydrogenase; Provisional
Probab=37.30 E-value=1.1e+02 Score=28.55 Aligned_cols=61 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred CeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEecchhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALKA 324 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~~Da~~~ 324 (422)
.++| +..|.||...+++..+.. ..+|+..++++.+++.+...+.... -.++.++..|.+..
T Consensus 3 k~vl-ItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (248)
T PRK08251 3 QKIL-ITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDH 65 (248)
T ss_pred CEEE-EECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCH
Confidence 3555 556788888888876532 3589999999999988877665532 23578888888764
No 359
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=36.55 E-value=1.1e+02 Score=28.36 Aligned_cols=61 Identities=26% Similarity=0.300 Sum_probs=43.4
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+-..+++..+. ...+|++++++..++..+.+.++..+ .++.++.+|....
T Consensus 6 ~~~il-ItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~ 67 (251)
T PRK12826 6 GRVAL-VTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDR 67 (251)
T ss_pred CCEEE-EcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCH
Confidence 45777 55567888888776543 34589999999988887777766554 3478888887653
No 360
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=36.44 E-value=98 Score=30.79 Aligned_cols=54 Identities=13% Similarity=-0.007 Sum_probs=36.4
Q ss_pred HHhcCCCCCCeEEEecCCCCh-hHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 254 AHALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgpGg-KT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
.....+++|++||=.++|+-| -+.++|+.++ .+|++.+.++.|.+.+ +++|.+.
T Consensus 158 ~~~~~~~~g~~VlV~G~g~iG~~a~~~a~~~G--~~vi~~~~~~~~~~~a----~~~Ga~~ 212 (329)
T TIGR02822 158 LLRASLPPGGRLGLYGFGGSAHLTAQVALAQG--ATVHVMTRGAAARRLA----LALGAAS 212 (329)
T ss_pred HHhcCCCCCCEEEEEcCCHHHHHHHHHHHHCC--CeEEEEeCChHHHHHH----HHhCCce
Confidence 344678899999987754333 3345556543 4799999999986554 4578653
No 361
>PRK06125 short chain dehydrogenase; Provisional
Probab=36.39 E-value=1e+02 Score=29.13 Aligned_cols=61 Identities=18% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
|.++| +..|.||-..+++..+.. ...|++++++..+++.+.+.++...-.++.++..|.+.
T Consensus 7 ~k~vl-ItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~~ 68 (259)
T PRK06125 7 GKRVL-ITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAHGVDVAVHALDLSS 68 (259)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCC
Confidence 44555 555678788888765532 35899999999999888877766533457777788764
No 362
>PRK06940 short chain dehydrogenase; Provisional
Probab=36.11 E-value=1.2e+02 Score=29.25 Aligned_cols=51 Identities=24% Similarity=0.287 Sum_probs=38.5
Q ss_pred ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 273 GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 273 GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
||...++++.+....+|+.+|++..+++.+.+.++..|. ++.++..|.+..
T Consensus 11 ~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~ 61 (275)
T PRK06940 11 GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSR 61 (275)
T ss_pred ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCH
Confidence 788889988776567899999998888777766665543 467777787653
No 363
>PRK06139 short chain dehydrogenase; Provisional
Probab=35.99 E-value=1.1e+02 Score=30.69 Aligned_cols=62 Identities=16% Similarity=0.247 Sum_probs=46.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.+|| +..|.||...++++.+. ...+|+.+++++.+++.+.+.++..|. .+.++..|.+..
T Consensus 6 ~~k~vl-ITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~ 68 (330)
T PRK06139 6 HGAVVV-ITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDA 68 (330)
T ss_pred CCCEEE-EcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCH
Confidence 345555 66777888888887553 346899999999999999888887774 466677787643
No 364
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=35.52 E-value=14 Score=37.91 Aligned_cols=50 Identities=6% Similarity=-0.027 Sum_probs=40.2
Q ss_pred cccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhcc
Q 014571 168 QPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFRA 217 (422)
Q Consensus 168 ~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~~ 217 (422)
..+++|.|+++.+...+... +.+.++.+.+++.++|+|+.+.+.++..+.
T Consensus 50 ~~~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~~~~Rvn~lk~~~~~~~~~ 101 (355)
T COG0144 50 FRYSHPEWLVEKLPDALGEDEAEAIAAALLRPPPRSLRVNTLKADVEELLEA 101 (355)
T ss_pred ccccCcHHHHHHHHHHcChHHHHHHHHHcCCCCCeeEEEcCccCCHHHHHHH
Confidence 45899999998877776533 256677788889999999999999988863
No 365
>PRK06949 short chain dehydrogenase; Provisional
Probab=35.51 E-value=84 Score=29.38 Aligned_cols=61 Identities=20% Similarity=0.262 Sum_probs=44.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.|.+||= ..|.|+...+++..+... .+|++++++..+++.+.+.++..+. ++.++..|.+.
T Consensus 8 ~~k~ilI-tGasg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~ 69 (258)
T PRK06949 8 EGKVALV-TGASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTD 69 (258)
T ss_pred CCCEEEE-ECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCC
Confidence 3566664 457788888888776433 4799999999999888877765543 46777788764
No 366
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=35.51 E-value=1.1e+02 Score=28.70 Aligned_cols=61 Identities=23% Similarity=0.274 Sum_probs=44.8
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.|.+|| +..|.|+....+++.+. ...+|+..++++.+++.+.+.++..|. ++..+..|.+.
T Consensus 9 ~~k~vl-ItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~ 70 (255)
T PRK07523 9 TGRRAL-VTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTD 70 (255)
T ss_pred CCCEEE-EECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCC
Confidence 356777 55678888888887553 345899999999988888777776653 46777778765
No 367
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.42 E-value=1.3e+02 Score=28.44 Aligned_cols=64 Identities=22% Similarity=0.212 Sum_probs=43.0
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHH-hCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r-~g~~nv~~~~~Da~~~ 324 (422)
.|.++|=.+++-.|....+++.+. ....|+..|++..+++...+.++. +|..++.++..|.++.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~ 81 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSE 81 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCH
Confidence 356666555432266666666542 235799999999988888777765 5545688888887654
No 368
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=35.22 E-value=90 Score=30.62 Aligned_cols=53 Identities=26% Similarity=0.327 Sum_probs=35.7
Q ss_pred HhcCCCCCCeEEEecC--CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 255 HALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CA--gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
....+++|++||=.+| +-|.-+.++|+.++ .+|++.+.++.+.+.++ .+|.+.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G--~~Vi~~~~s~~~~~~~~----~lGa~~ 186 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKG--CKVVGAAGSDEKVAYLK----KLGFDV 186 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHH----HcCCCE
Confidence 4556889999986543 23444555666543 47999999998877664 467643
No 369
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=35.05 E-value=1.1e+02 Score=28.96 Aligned_cols=50 Identities=22% Similarity=0.227 Sum_probs=33.5
Q ss_pred HHhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 254 AHALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 254 ~~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
.....+++|++||=..+|+ |.-+.++|+.++. .+|++.+.++.|.+.+++
T Consensus 90 ~~~~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~-~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 90 VRDAEPRLGERVAVVGLGLVGLLAAQLAKAAGA-REVVGVDPDAARRELAEA 140 (277)
T ss_pred HHhcCCCCCCEEEEECCCHHHHHHHHHHHHcCC-CcEEEECCCHHHHHHHHH
Confidence 3456788999998874433 3345566666542 249999999998764443
No 370
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=34.82 E-value=98 Score=27.72 Aligned_cols=37 Identities=19% Similarity=0.163 Sum_probs=29.0
Q ss_pred EEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571 288 EVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA 324 (422)
Q Consensus 288 ~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~ 324 (422)
+|+|+|+-+.-++..+++++..|+. +++++..+-..+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l 38 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENL 38 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHH
Confidence 5999999999999999999999985 488887655544
No 371
>PRK07677 short chain dehydrogenase; Provisional
Probab=34.39 E-value=1.4e+02 Score=27.93 Aligned_cols=59 Identities=15% Similarity=0.265 Sum_probs=42.1
Q ss_pred CeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.++| +..|.||-..++++.+. ....|+.++++..+++.+.+.++..+ .++.++..|.+.
T Consensus 2 k~~l-ItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~ 61 (252)
T PRK07677 2 KVVI-ITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRN 61 (252)
T ss_pred CEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCC
Confidence 4556 45567777777776553 24589999999998888877776655 457788888765
No 372
>PRK06141 ornithine cyclodeaminase; Validated
Probab=34.19 E-value=1.5e+02 Score=29.79 Aligned_cols=65 Identities=18% Similarity=0.151 Sum_probs=48.4
Q ss_pred ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhc-cCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL-LRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (422)
Q Consensus 247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l-~~~~g~V~A~D~s~~rl~~l~~~l~r~g~ 311 (422)
-..|.++++.|......+|+=+++|.=++....+-+ +.+-.+|+..++++.+.+.+.+.++..|.
T Consensus 110 aa~sala~~~La~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~ 175 (314)
T PRK06141 110 AAASALAASYLARKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGF 175 (314)
T ss_pred HHHHHHHHHHhCCCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 357888999998888889998887766665533222 24456899999999999998888776553
No 373
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=34.06 E-value=1.4e+02 Score=25.82 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=37.1
Q ss_pred CCCeEEEecCCCChhHHHHHhcc--CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch
Q 014571 261 KGERILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~--~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da 321 (422)
.|.+||=++|| |-+..++..+ .+-.+|+-+.++..|.+.+.+.+ +-.++.+...+-
T Consensus 11 ~~~~vlviGaG--g~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~~ 68 (135)
T PF01488_consen 11 KGKRVLVIGAG--GAARAVAAALAALGAKEITIVNRTPERAEALAEEF---GGVNIEAIPLED 68 (135)
T ss_dssp TTSEEEEESSS--HHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGGG
T ss_pred CCCEEEEECCH--HHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHc---CccccceeeHHH
Confidence 57889888874 4444443332 23457999999999988877766 444566666543
No 374
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=33.71 E-value=36 Score=31.86 Aligned_cols=40 Identities=28% Similarity=0.354 Sum_probs=29.2
Q ss_pred ChhHHHHHhcc------CCCcEEEEEcCC-hHHHHHHHHHHHHhCCc
Q 014571 273 GGKTTAIASLL------RDEGEVVAVDRS-HNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 273 GgKT~~la~l~------~~~g~V~A~D~s-~~rl~~l~~~l~r~g~~ 312 (422)
-|||+-+|.+. +.+-.+++.|.. ..-.+.++..++.+|++
T Consensus 12 vGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 12 VGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp SSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred CchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc
Confidence 37999887653 334578888955 47789999999999865
No 375
>PRK05876 short chain dehydrogenase; Provisional
Probab=33.40 E-value=1.2e+02 Score=29.29 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=43.9
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.++| +..|.||...+++..+. ...+|+..|++..+++.+.+.++..|. ++.++..|.++.
T Consensus 6 ~k~vl-VTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~ 67 (275)
T PRK05876 6 GRGAV-ITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHR 67 (275)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCH
Confidence 55666 55667888888887653 335899999999888877777665553 467778887654
No 376
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=33.12 E-value=73 Score=31.60 Aligned_cols=43 Identities=16% Similarity=0.165 Sum_probs=32.6
Q ss_pred CCeEEEecCCCChhHHHHH----hccC----CCcEEEEEcCChHHHHHHHH
Q 014571 262 GERILDMCAAPGGKTTAIA----SLLR----DEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la----~l~~----~~g~V~A~D~s~~rl~~l~~ 304 (422)
.-+||-++|++|-=.--|| +.++ ..-+|+|.|+|.+.++.++.
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~ 147 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA 147 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence 5689999999996544443 4333 25799999999999998873
No 377
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=32.67 E-value=80 Score=31.38 Aligned_cols=61 Identities=20% Similarity=0.198 Sum_probs=47.4
Q ss_pred CeEEEecCCCCh----hHHHHHhccCCC------cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 263 ERILDMCAAPGG----KTTAIASLLRDE------GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 263 ~~VLD~CAgpGg----KT~~la~l~~~~------g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
-..+.+..|+|| +|..++..+..+ .++.|.|.+...++..-..+..+|++||-++.+|...
T Consensus 30 p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr~~~~~~l~~~L~~~~~~Gi~niLal~GD~p~ 100 (281)
T TIGR00677 30 PLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCTNMPIEMIDDALERAYSNGIQNILALRGDPPH 100 (281)
T ss_pred CCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
Confidence 356888888876 466666665422 3889999999888877777889999999999999753
No 378
>PRK07340 ornithine cyclodeaminase; Validated
Probab=31.99 E-value=1.6e+02 Score=29.36 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=48.8
Q ss_pred hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhc-cCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASL-LRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311 (422)
Q Consensus 248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l-~~~~g~V~A~D~s~~rl~~l~~~l~r~g~ 311 (422)
..|.+++..|......+++-++||.=+++...+-. ..+--+|...++++.|.+.+.+.++..++
T Consensus 111 A~sala~~~La~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~ 175 (304)
T PRK07340 111 AVSLLAARTLAPAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGP 175 (304)
T ss_pred HHHHHHHHHhCCCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCC
Confidence 47888999998888889999888777765544432 23445899999999999998888876543
No 379
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=31.94 E-value=1.2e+02 Score=29.36 Aligned_cols=51 Identities=25% Similarity=0.320 Sum_probs=35.3
Q ss_pred hcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 256 ALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
...+++|++||...+|. |.-+.++|+.++ ..|++.+.++.+.+.+++ +|.+
T Consensus 160 ~~~~~~~~~vli~g~g~vG~~~~~la~~~G--~~V~~~~~s~~~~~~~~~----~g~~ 211 (338)
T cd08254 160 AGEVKPGETVLVIGLGGLGLNAVQIAKAMG--AAVIAVDIKEEKLELAKE----LGAD 211 (338)
T ss_pred ccCCCCCCEEEEECCcHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH----hCCC
Confidence 34578899999964432 455666777653 569999999988776643 6664
No 380
>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.
Probab=31.82 E-value=60 Score=29.76 Aligned_cols=40 Identities=20% Similarity=0.209 Sum_probs=31.4
Q ss_pred CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEe
Q 014571 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVS 163 (422)
Q Consensus 122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~ 163 (422)
....|+|..++....|-|-||+--||.....+.+.. |.|+
T Consensus 90 ~~~kvwvk~~~e~~FLYGndV~ks~i~~i~e~~~~~--VvV~ 129 (162)
T PF03657_consen 90 AKNKVWVKPKAEMLFLYGNDVLKSSIGRITEDTPQN--VVVY 129 (162)
T ss_dssp -SSEEEE-HHHHHHHCTT--EEGGGEEEEETTS-TC--EEEE
T ss_pred cceeEEECCCceEEeeecCCchHhhcEEecCCCCce--EEEE
Confidence 355999999999999999999999999999988755 7777
No 381
>COG0685 MetF 5,10-methylenetetrahydrofolate reductase [Amino acid transport and metabolism]
Probab=31.69 E-value=2e+02 Score=28.72 Aligned_cols=78 Identities=21% Similarity=0.214 Sum_probs=54.0
Q ss_pred EeChhHHHHHHhcCCCCCCeEEEecCCC-Chh--HHHHHh----ccC---CCcEEEEEcCChHHHHHHHHHHHHhCCcce
Q 014571 245 LQNLPSIVTAHALDPQKGERILDMCAAP-GGK--TTAIAS----LLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314 (422)
Q Consensus 245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgp-GgK--T~~la~----l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv 314 (422)
.+++...+....-...|+-.=+++++|+ |++ |..++. ... .-.++.|.|.+...+...-+.+..+|+.||
T Consensus 30 ~~~l~~~~~~~~~~~~p~~~svt~~d~~~~~~~~t~~~~~~~~~~~~~~~~i~Hltc~d~n~~~i~~~l~~~~~~Gi~~i 109 (291)
T COG0685 30 EENLEKLLERLAILLGPGFDSVTIPDGSRGTPRRTSVAAAALLKRTGGIEPIPHLTCRDRNRIEIISILKGAAALGIRNI 109 (291)
T ss_pred hcCHHHHHHHHHhhhCCceEEEEecCCCCCCCcccHHHHHHHHHhcCCCccceeecccCCCHHHHHHHHHHHHHhCCceE
Confidence 3566655554443456666667778887 443 222221 111 234899999999999999999999999999
Q ss_pred EEEecchh
Q 014571 315 TTYKLDAL 322 (422)
Q Consensus 315 ~~~~~Da~ 322 (422)
-++.+|--
T Consensus 110 laLrGDpp 117 (291)
T COG0685 110 LALRGDPP 117 (291)
T ss_pred EEecCCCC
Confidence 99999974
No 382
>PRK05875 short chain dehydrogenase; Provisional
Probab=31.52 E-value=1.4e+02 Score=28.39 Aligned_cols=63 Identities=14% Similarity=0.132 Sum_probs=43.9
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~~Da~~~ 324 (422)
.+.+||= ..|.|+...++++.+. ...+|++++++..+.+...+.+...+ ..++.++..|.+..
T Consensus 6 ~~k~vlI-tGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~ 70 (276)
T PRK05875 6 QDRTYLV-TGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDE 70 (276)
T ss_pred CCCEEEE-ECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCH
Confidence 3567774 4566888888887653 33589999999888877766665543 24678888887653
No 383
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=31.36 E-value=1.8e+02 Score=25.00 Aligned_cols=87 Identities=15% Similarity=0.086 Sum_probs=53.8
Q ss_pred ecCCCChhHHHHHhccCC--CcEEEEEcCC--hHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571 268 MCAAPGGKTTAIASLLRD--EGEVVAVDRS--HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN 343 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~--~g~V~A~D~s--~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~ 343 (422)
+..|.||....+++.+-. ...|+.+.++ ..+.+.+.+.++..+ .++.++..|.+........... .....
T Consensus 5 ItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~-----~~~~~ 78 (167)
T PF00106_consen 5 ITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEE-----VIKRF 78 (167)
T ss_dssp EETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHH-----HHHHH
T ss_pred EECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccc-cccccccccccccccccccccc-----ccccc
Confidence 345667777777765422 3478888888 788888888888777 7799999997654221100000 00113
Q ss_pred CCCCceeecCCccccCc
Q 014571 344 NYITSQTSDSMKLHKEV 360 (422)
Q Consensus 344 ~~FD~VLvDaPCSg~G~ 360 (422)
+.+|.++.-+.....+.
T Consensus 79 ~~ld~li~~ag~~~~~~ 95 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGS 95 (167)
T ss_dssp SSESEEEEECSCTTSBS
T ss_pred ccccccccccccccccc
Confidence 45788888544444333
No 384
>PRK07814 short chain dehydrogenase; Provisional
Probab=31.09 E-value=1.1e+02 Score=29.09 Aligned_cols=62 Identities=15% Similarity=0.183 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.|.++|=. .|.|+-..++++.+ ....+|+.++++..+++.+.+.++..+ ..+.++..|.+..
T Consensus 9 ~~~~vlIt-GasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVT-GAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG-RRAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEE-CCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 46666644 46788888888755 334699999999988888777776655 3477777887654
No 385
>PRK09291 short chain dehydrogenase; Provisional
Probab=30.78 E-value=1e+02 Score=28.72 Aligned_cols=59 Identities=29% Similarity=0.284 Sum_probs=43.0
Q ss_pred eEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|| +..|.|+...++++.+. ....|++.+++....+.+.+..+..+. .+.++.+|.+..
T Consensus 4 ~vl-VtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 63 (257)
T PRK09291 4 TIL-ITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDA 63 (257)
T ss_pred EEE-EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCH
Confidence 455 55668888888877653 345899999999888887777666654 477888887654
No 386
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=30.22 E-value=1.2e+02 Score=29.42 Aligned_cols=53 Identities=25% Similarity=0.355 Sum_probs=35.4
Q ss_pred HhcCCCCCCeEEEecC--CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 255 HALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CA--gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
....+++|++||=.++ +-|..+.++|..++ .+|++.+.++.+.+.+++ +|.+.
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G--~~vi~~~~s~~~~~~l~~----~Ga~~ 191 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKG--CKVIGCAGSDDKVAWLKE----LGFDA 191 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHH----cCCCE
Confidence 4556889999885432 33444555666653 479999999988777654 67643
No 387
>PRK05866 short chain dehydrogenase; Provisional
Probab=30.14 E-value=1.1e+02 Score=29.94 Aligned_cols=61 Identities=26% Similarity=0.278 Sum_probs=44.5
Q ss_pred CCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.+|| +..|.||...++++.+ ....+|++++++..+++.+.+.+...+. .+.++..|....
T Consensus 40 ~k~vl-ItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~ 101 (293)
T PRK05866 40 GKRIL-LTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDL 101 (293)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 34555 6667888888888765 3345899999999998888877766553 466778887653
No 388
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=29.91 E-value=1.1e+02 Score=30.02 Aligned_cols=64 Identities=17% Similarity=0.264 Sum_probs=47.5
Q ss_pred CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
..-..+.|..++-||||.|-.|... +-.++..+|++...+..++...+... ....+...|+..+
T Consensus 47 ~~~~~~~v~eIgPgpggitR~il~a--~~~RL~vVE~D~RFip~LQ~L~EAa~-~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 47 GNLTNAYVYEIGPGPGGITRSILNA--DVARLLVVEKDTRFIPGLQMLSEAAP-GKLRIHHGDVLRF 110 (326)
T ss_pred cccccceeEEecCCCCchhHHHHhc--chhheeeeeeccccChHHHHHhhcCC-cceEEecccccee
Confidence 3445678999999999999999875 34678889999888888777655332 3466777777654
No 389
>PRK07576 short chain dehydrogenase; Provisional
Probab=29.84 E-value=1.2e+02 Score=28.98 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=43.3
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
++.++|=.+ |.|+-..++++.+.. ...|+++|+++..++...+.+...+. ++.++..|.+.
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~ 69 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRD 69 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCC
Confidence 466777554 677788887765533 35899999999888877766666553 46777888765
No 390
>PLN02780 ketoreductase/ oxidoreductase
Probab=29.34 E-value=1.4e+02 Score=29.85 Aligned_cols=61 Identities=21% Similarity=0.186 Sum_probs=43.1
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHh-CCcceEEEecchh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDAL 322 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~~~Da~ 322 (422)
.|.++| +..|+||...++|..+.. ...|+.+++++.+++.+.+.++.. +-..+..+..|..
T Consensus 52 ~g~~~l-ITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWAL-VTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEE-EeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 366776 556678888888876533 458999999999999888877653 2234666667765
No 391
>PRK05867 short chain dehydrogenase; Provisional
Probab=29.25 E-value=1.9e+02 Score=27.05 Aligned_cols=62 Identities=16% Similarity=0.153 Sum_probs=44.6
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.|.++|= ..|.||...+++..+. ...+|+.++++..+++.+.+.++..+ .++.++..|.++.
T Consensus 8 ~~k~vlV-tGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 70 (253)
T PRK05867 8 HGKRALI-TGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQH 70 (253)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCH
Confidence 3566764 4456777788877653 34589999999999988888777666 3577788887654
No 392
>PRK07035 short chain dehydrogenase; Provisional
Probab=29.23 E-value=1.2e+02 Score=28.28 Aligned_cols=61 Identities=20% Similarity=0.194 Sum_probs=42.3
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+...++++.+.. ..+|+.++++..+++.+.+.+...+. ++.++..|....
T Consensus 8 ~k~vl-ItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 69 (252)
T PRK07035 8 GKIAL-VTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGG-KAEALACHIGEM 69 (252)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCH
Confidence 33444 456678888888776532 34899999999988888877776653 456667776543
No 393
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=29.16 E-value=2e+02 Score=26.50 Aligned_cols=61 Identities=16% Similarity=0.247 Sum_probs=43.8
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+|.++|= ..|.|+-..++++.+. ...+|+.+|+++.+++.+.+.++..+. ++..+..|.+.
T Consensus 4 ~~~~~lI-tG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~ 65 (253)
T PRK08217 4 KDKVIVI-TGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGT-EVRGYAANVTD 65 (253)
T ss_pred CCCEEEE-ECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCC
Confidence 4667774 4456888888877553 335899999999998888777776653 56777788654
No 394
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=29.13 E-value=1e+02 Score=31.38 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=42.0
Q ss_pred ccceEEEe-ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH
Q 014571 239 LEGEIFLQ-NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306 (422)
Q Consensus 239 ~~G~~~~Q-d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l 306 (422)
-.|+.|.| +.-+.+=..++...+|.+|.-+++|--+.-..|+ ....+|.++|+++.-+..-+=++
T Consensus 40 FsgLvYpqiwEDp~Vdmeam~~g~ghrivtigSGGcn~L~yls---r~Pa~id~VDlN~ahiAln~lkl 105 (414)
T COG5379 40 FSGLVYPQIWEDPSVDMEAMQLGIGHRIVTIGSGGCNMLAYLS---RAPARIDVVDLNPAHIALNRLKL 105 (414)
T ss_pred hcccccccccCCccccHHHHhcCCCcEEEEecCCcchHHHHhh---cCCceeEEEeCCHHHHHHHHHHH
Confidence 46777777 4445556677778899999865544332222333 34689999999998775544333
No 395
>PRK08339 short chain dehydrogenase; Provisional
Probab=29.00 E-value=2.1e+02 Score=27.20 Aligned_cols=62 Identities=15% Similarity=0.175 Sum_probs=44.3
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.++| +..|.||....+++.+- ...+|+.++++..+++.+.+.++...-.++.++..|.+..
T Consensus 8 ~k~~l-ItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~ 70 (263)
T PRK08339 8 GKLAF-TTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKR 70 (263)
T ss_pred CCEEE-EeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCH
Confidence 55555 55666788888877653 3458999999999988887776654223577888887764
No 396
>PRK08267 short chain dehydrogenase; Provisional
Probab=28.84 E-value=94 Score=29.26 Aligned_cols=54 Identities=20% Similarity=0.075 Sum_probs=38.2
Q ss_pred ecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 268 MCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+..|.|+....+++.+.. ..+|++++++..+++.+.+.+. -.++.++..|.++.
T Consensus 6 ItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~ 60 (260)
T PRK08267 6 ITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDR 60 (260)
T ss_pred EeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCH
Confidence 455678888888775533 3589999999988877766443 24577888887754
No 397
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=28.59 E-value=82 Score=32.99 Aligned_cols=55 Identities=33% Similarity=0.484 Sum_probs=39.5
Q ss_pred eEEEecCCCChhHHHHHhcc--CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 264 RILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~--~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+||=++| |+-...+|..+ ++.++|+..|++..+++++...... .+++.+.|+...
T Consensus 3 ~ilviGa--G~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~----~v~~~~vD~~d~ 59 (389)
T COG1748 3 KILVIGA--GGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG----KVEALQVDAADV 59 (389)
T ss_pred cEEEECC--chhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc----cceeEEecccCh
Confidence 5666677 77777666653 2237999999999999888765322 678888887654
No 398
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=28.00 E-value=1.8e+02 Score=26.90 Aligned_cols=62 Identities=21% Similarity=0.286 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCc-EEEE-EcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEG-EVVA-VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g-~V~A-~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|.++| +..|.|+-..+++..+...| +|+. .+++..+.+.+.+.++..+ .++.++..|.+..
T Consensus 3 ~~~~vl-ItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 66 (250)
T PRK08063 3 SGKVAL-VTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDV 66 (250)
T ss_pred CCCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCH
Confidence 345666 66677888888887764444 6655 5778888877777776665 3577788887654
No 399
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=27.68 E-value=1e+02 Score=33.50 Aligned_cols=48 Identities=21% Similarity=0.221 Sum_probs=37.4
Q ss_pred CCCCCeEEEecCCCChhH-HHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 259 PQKGERILDMCAAPGGKT-TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 259 p~pg~~VLD~CAgpGgKT-~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
..+|++|+=++||+=|.. ...|..++ ..|+++|+++.|++.+++ +|.+
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lG--A~V~a~D~~~~rle~aes----lGA~ 210 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLG--AIVRAFDTRPEVAEQVES----MGAE 210 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCC--CEEEEEeCCHHHHHHHHH----cCCe
Confidence 568999999999987754 45566665 479999999999887665 6765
No 400
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=27.28 E-value=1.9e+02 Score=26.49 Aligned_cols=61 Identities=23% Similarity=0.212 Sum_probs=43.2
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+...+++..+. ...+|+.+++++.+.+.+...++..+. .+.++..|....
T Consensus 5 ~~~il-ItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~ 66 (246)
T PRK05653 5 GKTAL-VTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGG-EARVLVFDVSDE 66 (246)
T ss_pred CCEEE-EECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCC-ceEEEEccCCCH
Confidence 45677 55668888888877653 234799999999988877776665553 366777777643
No 401
>PF09157 TruB-C_2: Pseudouridine synthase II TruB, C-terminal; InterPro: IPR015240 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. The C-terminal domain adopts a secondary structure consisting of a four-stranded beta sheet and one alpha helix, similar to that found in PUA domains. It is predominantly involved in RNA-binding, being mostly found in tRNA pseudouridine synthase B (TruB) []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1ZL3_A 1K8W_A 1R3F_A.
Probab=27.17 E-value=1.3e+02 Score=22.13 Aligned_cols=33 Identities=24% Similarity=0.364 Sum_probs=18.7
Q ss_pred EEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEe
Q 014571 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVS 163 (422)
Q Consensus 125 ~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~ 163 (422)
.|.++...+..+++|-.+.. .......| .|.||
T Consensus 2 ~v~L~~~~~~~~~~Gq~v~~-----~~~~~~~~-~vrvy 34 (58)
T PF09157_consen 2 AVVLDEEQAKRFLHGQRVRL-----RDDAPPDG-LVRVY 34 (58)
T ss_dssp EEEE-HHHHHHHTTT--B--------SS--SSS-EEEEE
T ss_pred eEEeCHHHHHHHHCcCcccc-----cCCCCCCc-eEEEE
Confidence 57788888999999998844 22233344 78888
No 402
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=26.93 E-value=1.6e+02 Score=29.52 Aligned_cols=53 Identities=26% Similarity=0.323 Sum_probs=37.6
Q ss_pred hcCCCCCCeEEEecC--CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 256 ALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 256 ~L~p~pg~~VLD~CA--gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
...+++|++||=.+| +-|.-+.++|..++ .+|++.+.++.|.+.+++ .+|.+.
T Consensus 153 ~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G--~~Vi~~~~~~~k~~~~~~---~lGa~~ 207 (348)
T PLN03154 153 VCSPKKGDSVFVSAASGAVGQLVGQLAKLHG--CYVVGSAGSSQKVDLLKN---KLGFDE 207 (348)
T ss_pred hcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEcCCHHHHHHHHH---hcCCCE
Confidence 356889999986655 34556677777764 579999999988776653 367643
No 403
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=26.64 E-value=1.5e+02 Score=27.46 Aligned_cols=61 Identities=13% Similarity=0.160 Sum_probs=43.2
Q ss_pred CCeEEEecCCCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.++|=. .|.|+-..+++..+... .+|+.++++..+.+.+.+.++..+ .++.++..|.+..
T Consensus 3 ~~~ilIt-Gas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~ 64 (250)
T TIGR03206 3 DKTAIVT-GGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDR 64 (250)
T ss_pred CCEEEEe-CCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 4456644 45678888887765433 489999999998888877776654 3577888887653
No 404
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=26.61 E-value=1.2e+02 Score=31.29 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=33.6
Q ss_pred cCCCCCCeEEEec-CC-CChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHH
Q 014571 257 LDPQKGERILDMC-AA-PGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKL 305 (422)
Q Consensus 257 L~p~pg~~VLD~C-Ag-pGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~ 305 (422)
..+++|++||=.+ +| -|--+.++|..++ +..+|++.|.++.|++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 4578899988654 22 3444555666543 223799999999999988764
No 405
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=26.42 E-value=1.5e+02 Score=27.58 Aligned_cols=56 Identities=25% Similarity=0.236 Sum_probs=40.8
Q ss_pred ecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 268 MCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+..|.|+...+++..+. ...+|++++++..+.+.+.+.++..+ .++.++..|....
T Consensus 6 ItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 62 (255)
T TIGR01963 6 VTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKE 62 (255)
T ss_pred EcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCH
Confidence 45567888888886653 34589999999988888877766555 3577888887653
No 406
>PRK05650 short chain dehydrogenase; Provisional
Probab=26.27 E-value=1.4e+02 Score=28.33 Aligned_cols=58 Identities=19% Similarity=0.108 Sum_probs=42.1
Q ss_pred EEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 265 ILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 265 VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|| +..|.|+...+++..+. ...+|+..+++..+++.+.+.++..| .++.++..|.+..
T Consensus 3 vl-VtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~ 61 (270)
T PRK05650 3 VM-ITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAG-GDGFYQRCDVRDY 61 (270)
T ss_pred EE-EecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEccCCCH
Confidence 44 45678888888876553 34589999999998888877777665 3477778887653
No 407
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=26.19 E-value=90 Score=32.36 Aligned_cols=74 Identities=22% Similarity=0.175 Sum_probs=57.1
Q ss_pred HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhh
Q 014571 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVR 326 (422)
Q Consensus 251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~ 326 (422)
.+.+.....+||..++|+.||-|+-+..++..- ...++++|.++..+.+........++++ -.++.+|.-+.+.
T Consensus 100 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f~--~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~f 174 (364)
T KOG1269|consen 100 GIVALRESCFPGSKVLDVGTGVGGPSRYIAVFK--KAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPF 174 (364)
T ss_pred chHHHhhcCcccccccccCcCcCchhHHHHHhc--cCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCC
Confidence 344445567889999999999999999999873 4689999999999999888888887754 3335566665543
No 408
>PRK05717 oxidoreductase; Validated
Probab=26.14 E-value=1.6e+02 Score=27.60 Aligned_cols=58 Identities=22% Similarity=0.260 Sum_probs=40.4
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.+|| +..|.|+...+++..+. ...+|+.+|+++.+...+.+ ..+ .++.++..|.+..
T Consensus 10 ~k~vl-ItG~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~---~~~-~~~~~~~~Dl~~~ 68 (255)
T PRK05717 10 GRVAL-VTGAARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAK---ALG-ENAWFIAMDVADE 68 (255)
T ss_pred CCEEE-EeCCcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH---HcC-CceEEEEccCCCH
Confidence 55677 56667888998888764 34589999998877655433 233 3477888887764
No 409
>PRK09186 flagellin modification protein A; Provisional
Probab=26.13 E-value=1.4e+02 Score=27.91 Aligned_cols=62 Identities=21% Similarity=0.296 Sum_probs=42.6
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHH-hCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r-~g~~nv~~~~~Da~~~ 324 (422)
|.+|| ++.|.|+...+++..+.. ..+|+.+++++.+++.+.+.+.. .+-..+.++..|..+.
T Consensus 4 ~k~vl-ItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~ 67 (256)
T PRK09186 4 GKTIL-ITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQ 67 (256)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCH
Confidence 44555 566678888888876633 45899999999888877766643 3434566667787653
No 410
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=25.99 E-value=58 Score=31.63 Aligned_cols=80 Identities=23% Similarity=0.218 Sum_probs=42.7
Q ss_pred ChhHHHHHhc----cCCCcEEEEEcCChHH-HHHHHHHHHHhCC--cceEEEecchhhhhhccCCCCCCccccCCCCCCC
Q 014571 273 GGKTTAIASL----LRDEGEVVAVDRSHNK-VMDIQKLAAEMGL--KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY 345 (422)
Q Consensus 273 GgKT~~la~l----~~~~g~V~A~D~s~~r-l~~l~~~l~r~g~--~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~ 345 (422)
-|||+.+..+ ...+++|.-+|-++++ +..=++++.+.|. .++.+...+-......-.. ......
T Consensus 13 aGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~~~e~~~l~~~~e---------~a~~~~ 83 (231)
T PF07015_consen 13 AGKTTAAMALASELAARGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYEADELTILEDAYE---------AAEASG 83 (231)
T ss_pred CcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEeccchhhHHHHHH---------HHHhcC
Confidence 4688765433 2345789999998877 3444555555553 2355544432211111000 001124
Q ss_pred CCceeecCCccccCch
Q 014571 346 ITSQTSDSMKLHKEVP 361 (422)
Q Consensus 346 FD~VLvDaPCSg~G~l 361 (422)
||.||+|-+=+++-+.
T Consensus 84 ~d~VlvDleG~as~~~ 99 (231)
T PF07015_consen 84 FDFVLVDLEGGASELN 99 (231)
T ss_pred CCEEEEeCCCCCchhH
Confidence 8999999876655443
No 411
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=25.88 E-value=1.1e+02 Score=30.20 Aligned_cols=41 Identities=20% Similarity=0.308 Sum_probs=34.5
Q ss_pred CCCCeEEEecCCCChhHHHHHhccC----CCcEEEEEcCChHHHH
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLR----DEGEVVAVDRSHNKVM 300 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~----~~g~V~A~D~s~~rl~ 300 (422)
.+...+++++||.|..|..+++.+. +...++.+|+...|.+
T Consensus 17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K 61 (259)
T PF05206_consen 17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHK 61 (259)
T ss_pred CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCccccc
Confidence 5677999999999999999999874 3468999999877763
No 412
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=25.84 E-value=1.5e+02 Score=29.70 Aligned_cols=52 Identities=21% Similarity=0.274 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 256 ALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
....++|++||=.++|+ |.-+.++|+.++ ..+|+++|.++.|.+.++ ++|.+
T Consensus 171 ~~~~~~g~~VlV~G~g~vG~~a~~~ak~~G-~~~Vi~~~~~~~~~~~~~----~~Ga~ 223 (358)
T TIGR03451 171 TGGVKRGDSVAVIGCGGVGDAAIAGAALAG-ASKIIAVDIDDRKLEWAR----EFGAT 223 (358)
T ss_pred ccCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence 45678999999775432 223445555542 225999999999988774 46763
No 413
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=25.65 E-value=1.3e+02 Score=27.79 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=41.6
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+-..++++.+. ...+|+++++++.+++.+...++. + .++.++.+|....
T Consensus 5 ~~~vl-ItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~ 65 (251)
T PRK07231 5 GKVAI-VTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDE 65 (251)
T ss_pred CcEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCH
Confidence 34555 45667888888877653 335899999999888877766554 3 3477888887654
No 414
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=25.53 E-value=1.5e+02 Score=27.83 Aligned_cols=62 Identities=18% Similarity=0.212 Sum_probs=44.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.|.++| +..|.|+-..++++.+.. ...|+.++++..+++.+.+.++..+. ++.++.+|.+..
T Consensus 11 ~~k~il-ItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~ 73 (259)
T PRK08213 11 SGKTAL-VTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADE 73 (259)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCH
Confidence 355666 455778889998876633 34899999999988888777766543 466788887753
No 415
>PLN02740 Alcohol dehydrogenase-like
Probab=25.47 E-value=1.5e+02 Score=30.18 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=34.2
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCC-c-EEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDE-G-EVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-g-~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
...+++|++||=.++ |+-...++++.... . +|+++|.++.|++.+++ +|.+
T Consensus 193 ~~~~~~g~~VlV~G~--G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~----~Ga~ 245 (381)
T PLN02740 193 TANVQAGSSVAIFGL--GAVGLAVAEGARARGASKIIGVDINPEKFEKGKE----MGIT 245 (381)
T ss_pred ccCCCCCCEEEEECC--CHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH----cCCc
Confidence 456889999987754 55544443332222 3 69999999999887754 6764
No 416
>PRK06101 short chain dehydrogenase; Provisional
Probab=25.43 E-value=1.2e+02 Score=28.25 Aligned_cols=52 Identities=17% Similarity=0.200 Sum_probs=37.8
Q ss_pred ecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 268 MCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+..|.||...+++..+.. ..+|+++++++.+++.+.+. + .++.++.+|.++.
T Consensus 6 ItGas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~----~-~~~~~~~~D~~~~ 58 (240)
T PRK06101 6 ITGATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQ----S-ANIFTLAFDVTDH 58 (240)
T ss_pred EEcCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHh----c-CCCeEEEeeCCCH
Confidence 677889999998876643 45899999998877665432 1 3567778887754
No 417
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=25.34 E-value=1e+02 Score=29.66 Aligned_cols=47 Identities=21% Similarity=0.131 Sum_probs=36.7
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-------CcEEEEEcCChHHHHHHHHHHHH
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-------~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
.-+|++++||.|..+..+++.+.. ..+++-+|.|+...+.-++++..
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 459999999999999999887653 35899999999888887777765
No 418
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=25.15 E-value=81 Score=30.17 Aligned_cols=60 Identities=12% Similarity=0.117 Sum_probs=43.5
Q ss_pred CCCCeEEEecCCCChhHHHHHhccC---CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
...+.|+..+.+=||-++..|..|- ...+|+++|++-+-+...... .+.|.++.++++.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e-----~p~i~f~egss~dp 130 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE-----VPDILFIEGSSTDP 130 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc-----CCCeEEEeCCCCCH
Confidence 3456999999999999998888763 345899999987654333222 46677877777654
No 419
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=24.99 E-value=1.6e+02 Score=29.18 Aligned_cols=91 Identities=14% Similarity=0.112 Sum_probs=59.2
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN 339 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~ 339 (422)
.+.++| +..|++|....+|..+. +...|+-+-++..|++.+++.++...--.+.++..|..+.......... -
T Consensus 5 ~~~~~l-ITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DLs~~~~~~~l~~~-----l 78 (265)
T COG0300 5 KGKTAL-ITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADLSDPEALERLEDE-----L 78 (265)
T ss_pred CCcEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcCCChhHHHHHHHH-----H
Confidence 455555 56778888888887664 3468999999999999999999875433478888887654322110000 0
Q ss_pred CCCCCCCCceeecCCccccCc
Q 014571 340 SKDNNYITSQTSDSMKLHKEV 360 (422)
Q Consensus 340 ~~~~~~FD~VLvDaPCSg~G~ 360 (422)
......+|..+. |.|.|+
T Consensus 79 ~~~~~~IdvLVN---NAG~g~ 96 (265)
T COG0300 79 KERGGPIDVLVN---NAGFGT 96 (265)
T ss_pred HhcCCcccEEEE---CCCcCC
Confidence 011235676666 777777
No 420
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=24.80 E-value=2e+02 Score=27.65 Aligned_cols=51 Identities=27% Similarity=0.236 Sum_probs=33.0
Q ss_pred HhcCCCCCCeEEEecCCCChhHHH---HHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 255 HALDPQKGERILDMCAAPGGKTTA---IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgKT~~---la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
..+.+.+|++||=+++ |+-... +|+.++ ...|+++|.++.|++.++ ++|.+
T Consensus 114 ~~~~~~~g~~VlV~G~--G~vG~~~~~~ak~~G-~~~Vi~~~~~~~r~~~a~----~~Ga~ 167 (280)
T TIGR03366 114 EAAGDLKGRRVLVVGA--GMLGLTAAAAAAAAG-AARVVAADPSPDRRELAL----SFGAT 167 (280)
T ss_pred HhccCCCCCEEEEECC--CHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HcCCc
Confidence 3355678999998754 554443 444432 235899999999886654 46764
No 421
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=24.69 E-value=1.7e+02 Score=29.48 Aligned_cols=52 Identities=13% Similarity=0.205 Sum_probs=34.8
Q ss_pred hcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 256 ALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
...+++|++||=.+||+ |.-+.++|+.++ ..+|+++|.++.|++.++ ++|..
T Consensus 180 ~~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G-~~~Vi~~~~~~~~~~~a~----~~Ga~ 232 (368)
T TIGR02818 180 TAKVEEGDTVAVFGLGGIGLSVIQGARMAK-ASRIIAIDINPAKFELAK----KLGAT 232 (368)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCeEEEEcCCHHHHHHHH----HhCCC
Confidence 45678999999875433 223445555543 237999999999987774 46764
No 422
>PLN00198 anthocyanidin reductase; Provisional
Probab=24.44 E-value=1.4e+02 Score=29.57 Aligned_cols=66 Identities=15% Similarity=0.155 Sum_probs=40.0
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHHHh-CCcceEEEecchhhh
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDALKA 324 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~~~Da~~~ 324 (422)
|.|..+.+|| +..|.|....+++..+-.. .+|+++.++......... +..+ ...+++++.+|.+..
T Consensus 4 ~~~~~~~~vl-ItG~~GfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~Dl~d~ 71 (338)
T PLN00198 4 LTPTGKKTAC-VIGGTGFLASLLIKLLLQKGYAVNTTVRDPENQKKIAH-LRALQELGDLKIFGADLTDE 71 (338)
T ss_pred ccCCCCCeEE-EECCchHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH-HHhcCCCCceEEEEcCCCCh
Confidence 4566677766 6777899999998766433 478777766544332221 1111 123577888887653
No 423
>PRK08703 short chain dehydrogenase; Provisional
Probab=24.37 E-value=2.6e+02 Score=25.77 Aligned_cols=61 Identities=20% Similarity=0.235 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~ 322 (422)
.|.+||=. .|.|+...++++.+. ....|+++++++.+++.+.+.+...+-..+.++..|..
T Consensus 5 ~~k~vlIt-G~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~D~~ 66 (239)
T PRK08703 5 SDKTILVT-GASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHPEPFAIRFDLM 66 (239)
T ss_pred CCCEEEEE-CCCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCCCcceEEeeec
Confidence 35566654 467888888876553 34689999999999888877776655444556666654
No 424
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=24.23 E-value=82 Score=25.06 Aligned_cols=66 Identities=15% Similarity=-0.006 Sum_probs=41.8
Q ss_pred EEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecC---CccccCchhhhh
Q 014571 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS---MKLHKEVPSIAA 365 (422)
Q Consensus 289 V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa---PCSg~G~l~~lr 365 (422)
|.-+|-++...+.+++.++..|+..+.. ..|......... ...||.|++|. ..+|...++.+|
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~-~~~~~~~~~~~~-------------~~~~d~iiid~~~~~~~~~~~~~~i~ 66 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTT-ASSGEEALELLK-------------KHPPDLIIIDLELPDGDGLELLEQIR 66 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEE-ESSHHHHHHHHH-------------HSTESEEEEESSSSSSBHHHHHHHHH
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEE-ECCHHHHHHHhc-------------ccCceEEEEEeeeccccccccccccc
Confidence 4567999999999999999888744443 334443332111 23489999993 444444456566
Q ss_pred hCC
Q 014571 366 EGL 368 (422)
Q Consensus 366 r~p 368 (422)
+..
T Consensus 67 ~~~ 69 (112)
T PF00072_consen 67 QIN 69 (112)
T ss_dssp HHT
T ss_pred ccc
Confidence 655
No 425
>PRK07774 short chain dehydrogenase; Provisional
Probab=24.04 E-value=2.4e+02 Score=26.15 Aligned_cols=62 Identities=19% Similarity=0.232 Sum_probs=43.4
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.++| +..|.|+-..+++..+. ...+|+.++++....+.+.+.++..+ .++..+..|.+..
T Consensus 5 ~~k~vl-ItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 67 (250)
T PRK07774 5 DDKVAI-VTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDP 67 (250)
T ss_pred CCCEEE-EECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCH
Confidence 345565 66788899999887653 34589999999888877776665543 2456677787654
No 426
>PRK05854 short chain dehydrogenase; Provisional
Probab=23.98 E-value=2.9e+02 Score=27.23 Aligned_cols=62 Identities=19% Similarity=0.123 Sum_probs=43.9
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~~Da~~~ 324 (422)
|.++| ++.|.||...+++..+. ...+|+...++..+.+.+.+.+.... -.++.++..|....
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~ 77 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSL 77 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCH
Confidence 45555 66777888888887553 34689999999998887777665542 23577888887654
No 427
>PRK07825 short chain dehydrogenase; Provisional
Probab=23.86 E-value=1.7e+02 Score=27.82 Aligned_cols=57 Identities=16% Similarity=0.094 Sum_probs=39.2
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.++| +..|+||...++++.+. ....|+..++++.+++.+.+.+. ++.++..|.++.
T Consensus 5 ~~~il-VtGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~D~~~~ 62 (273)
T PRK07825 5 GKVVA-ITGGARGIGLATARALAALGARVAIGDLDEALAKETAAELG-----LVVGGPLDVTDP 62 (273)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc-----cceEEEccCCCH
Confidence 44566 66778888888887553 34578899999988776655432 466777787653
No 428
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=23.78 E-value=55 Score=35.13 Aligned_cols=87 Identities=15% Similarity=0.082 Sum_probs=58.0
Q ss_pred CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK 341 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~ 341 (422)
+..+|=++=|.|+...-+-..+ +...|+|+++++.+++.+.++.....-....+...|+..+..+...+. .
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~-p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~k~~--------~ 366 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSL-PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTAKSQ--------Q 366 (482)
T ss_pred cCcEEEEecCCCccccceeeec-CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHhhcc--------c
Confidence 3345545555566665554443 468999999999999999988665543345677778887765543221 2
Q ss_pred CCCCCCceeecCCccc
Q 014571 342 DNNYITSQTSDSMKLH 357 (422)
Q Consensus 342 ~~~~FD~VLvDaPCSg 357 (422)
....||.+++|.--+-
T Consensus 367 ~~~~~dvl~~dvds~d 382 (482)
T KOG2352|consen 367 EDICPDVLMVDVDSKD 382 (482)
T ss_pred cccCCcEEEEECCCCC
Confidence 3567999999975443
No 429
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=23.76 E-value=3e+02 Score=25.66 Aligned_cols=61 Identities=16% Similarity=0.131 Sum_probs=44.0
Q ss_pred CCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
.|.++|=. .|.|+-...++..+ ....+|+.++++...++.+.+.+++.|. ++.++..|.+.
T Consensus 10 ~~k~ilIt-Gas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVT-GSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIAD 71 (256)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCC
Confidence 46677744 45677777777654 3346899999999888888877777664 47778888764
No 430
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.74 E-value=1.1e+02 Score=29.78 Aligned_cols=62 Identities=19% Similarity=0.244 Sum_probs=46.8
Q ss_pred CeEEEecCCCChh----HHHHHhccCC------CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 263 ERILDMCAAPGGK----TTAIASLLRD------EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 263 ~~VLD~CAgpGgK----T~~la~l~~~------~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
-..+.+..+|||. |..++..+.. -.++.+.|.+...++..-..+..+|++||-++.+|....
T Consensus 29 ~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~~iL~l~GD~~~~ 100 (274)
T cd00537 29 PDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRNRIELQSILLGAHALGIRNILALRGDPPKG 100 (274)
T ss_pred CCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCCHHHHHHHHHHHHHCCCCeEEEeCCCCCCC
Confidence 4567888888864 4444443322 247889999999898888888999999999999997653
No 431
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=23.35 E-value=1.7e+02 Score=29.55 Aligned_cols=52 Identities=33% Similarity=0.387 Sum_probs=31.9
Q ss_pred HhcCCCCCCeEEEecCCCChh---HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 255 HALDPQKGERILDMCAAPGGK---TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgK---T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
.....++|++||=. +|.||- +.+||..++. .+++.-.+..+.+ .++++|.+.
T Consensus 136 ~~~~l~~g~~VLV~-gaaGgVG~~aiQlAk~~G~--~~v~~~~s~~k~~----~~~~lGAd~ 190 (326)
T COG0604 136 DRAGLKPGETVLVH-GAAGGVGSAAIQLAKALGA--TVVAVVSSSEKLE----LLKELGADH 190 (326)
T ss_pred HhcCCCCCCEEEEe-cCCchHHHHHHHHHHHcCC--cEEEEecCHHHHH----HHHhcCCCE
Confidence 34567889999954 444444 4555555432 7777777776655 344577643
No 432
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=23.29 E-value=1.7e+02 Score=27.32 Aligned_cols=61 Identities=15% Similarity=0.189 Sum_probs=43.4
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.++| +..|.|+...+++..+.. ..+|+..+++..++..+.+.++..+. .+.++..|.+..
T Consensus 9 ~k~~l-ItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~ 70 (254)
T PRK08085 9 GKNIL-ITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHK 70 (254)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCH
Confidence 44555 455678888888876643 35899999999988888777766553 466777787653
No 433
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=22.97 E-value=1.8e+02 Score=27.01 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=39.6
Q ss_pred ecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 268 MCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+..|.|+-..++++.+ ....+|+.++++..+++.+.+.++..|. ++.++..|.+.
T Consensus 5 ItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~ 60 (254)
T TIGR02415 5 VTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSD 60 (254)
T ss_pred EeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCC
Confidence 3456788888887655 3345899999998888877777766653 57778888764
No 434
>PRK06182 short chain dehydrogenase; Validated
Probab=22.94 E-value=1.7e+02 Score=27.78 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=38.2
Q ss_pred CCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| ++.|.||-..++++.+.. ..+|++++++..+++.+.. . ++.++.+|.+..
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~----~---~~~~~~~Dv~~~ 58 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS----L---GVHPLSLDVTDE 58 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh----C---CCeEEEeeCCCH
Confidence 34555 667788889999886633 4589999999887765432 2 366777787654
No 435
>PRK12829 short chain dehydrogenase; Provisional
Probab=22.91 E-value=2.9e+02 Score=25.76 Aligned_cols=64 Identities=22% Similarity=0.203 Sum_probs=43.7
Q ss_pred cCCCCCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 257 LDPQKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 257 L~p~pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+...++.++|=.+| .|+...+++..+. ....|+++++++...+.+.+...+. ++.++..|.+..
T Consensus 6 ~~~~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~ 70 (264)
T PRK12829 6 LKPLDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---KVTATVADVADP 70 (264)
T ss_pred hhccCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCH
Confidence 34457788885554 5888888887653 3468999999988777665544322 467777887653
No 436
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.88 E-value=1.3e+02 Score=27.64 Aligned_cols=67 Identities=19% Similarity=0.077 Sum_probs=48.9
Q ss_pred hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA 324 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~ 324 (422)
+|.-.+..+.+|+++|-|..-++.++.- --.-+++|.++.-+...+-.+-|.|+ +...+..-|.-+.
T Consensus 67 ll~~n~~GklvDlGSGDGRiVlaaar~g--~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 67 LLRGNPKGKLVDLGSGDGRIVLAAARCG--LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HccCCCCCcEEeccCCCceeehhhhhhC--CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 3334565789999999999888888763 23568899999988888877778886 3456665565554
No 437
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=22.86 E-value=89 Score=33.89 Aligned_cols=48 Identities=17% Similarity=0.204 Sum_probs=36.7
Q ss_pred CCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 270 AAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 270 AgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
||-|....++++.+.. ...++.+|.++++++.+++ .| +.++.+|+++.
T Consensus 423 ~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~----~g---~~~i~GD~~~~ 471 (558)
T PRK10669 423 VGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE----RG---IRAVLGNAANE 471 (558)
T ss_pred ECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH----CC---CeEEEcCCCCH
Confidence 5667777788887654 3589999999999888864 33 67889999864
No 438
>PRK08324 short chain dehydrogenase; Validated
Probab=22.55 E-value=1.9e+02 Score=32.29 Aligned_cols=61 Identities=20% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+|.+|| +..|.|+...+++..+. ...+|+++|++..+++.+.+.+... .++.++..|.+..
T Consensus 421 ~gk~vL-VTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~ 482 (681)
T PRK08324 421 AGKVAL-VTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDE 482 (681)
T ss_pred CCCEEE-EecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCH
Confidence 567777 55667888888877653 3458999999998887766554432 3577888887653
No 439
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=22.40 E-value=1.5e+02 Score=29.51 Aligned_cols=59 Identities=19% Similarity=0.285 Sum_probs=40.0
Q ss_pred CCeEEEecCCCChhHHHHHhccCCC---cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~~~---g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
|.+|| +..|+|+...++++.+... .+|+++|++..+...+.+. +...++.++.+|.+..
T Consensus 4 ~k~vL-VTGatG~IG~~l~~~L~~~g~~~~V~~~~r~~~~~~~~~~~---~~~~~~~~v~~Dl~d~ 65 (324)
T TIGR03589 4 NKSIL-ITGGTGSFGKAFISRLLENYNPKKIIIYSRDELKQWEMQQK---FPAPCLRFFIGDVRDK 65 (324)
T ss_pred CCEEE-EeCCCCHHHHHHHHHHHHhCCCcEEEEEcCChhHHHHHHHH---hCCCcEEEEEccCCCH
Confidence 55677 5666899999998866433 4799999887665444332 2224688888888764
No 440
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=22.31 E-value=2e+02 Score=28.31 Aligned_cols=54 Identities=28% Similarity=0.308 Sum_probs=35.9
Q ss_pred HhcCCCCCCeEEEecC--CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 255 HALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CA--gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
....+++|++||=.+| |-|.-+.++|..++ .+|++.+.++.+.+.+++. +|.+.
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G--~~Vi~~~~~~~~~~~~~~~---lGa~~ 200 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKG--CYVVGSAGSDEKVDLLKNK---LGFDD 200 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcC--CEEEEEeCCHHHHHHHHHh---cCCce
Confidence 3456889999995543 23334455666653 4799999999887777642 57643
No 441
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=22.25 E-value=2e+02 Score=26.97 Aligned_cols=61 Identities=11% Similarity=0.047 Sum_probs=40.5
Q ss_pred CeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHh-CCcceEEEecchhhh
Q 014571 263 ERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDALKA 324 (422)
Q Consensus 263 ~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~~~Da~~~ 324 (422)
.+||=.+ |.|+-..+++..+. ....|+.+|++..+.+.+.+.++.. +-.++.++..|.+..
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~ 65 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSE 65 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCH
Confidence 3455444 56777777776553 3458999999998887776655443 323577888887653
No 442
>PRK05855 short chain dehydrogenase; Validated
Probab=22.17 E-value=1.7e+02 Score=30.89 Aligned_cols=62 Identities=23% Similarity=0.287 Sum_probs=46.8
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV 325 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~ 325 (422)
+.++| +..|.||...+++..+. ...+|+.++++..+++.+.+.++..|. ++.++..|.++..
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~ 377 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDAD 377 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHH
Confidence 45566 56678888888887663 345899999999999888887777664 5788888887643
No 443
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=21.84 E-value=2.6e+02 Score=27.92 Aligned_cols=69 Identities=10% Similarity=-0.023 Sum_probs=47.0
Q ss_pred HhcCCCCCCeEEEecCCCChhHHHHHhccCCC---cEEEEEcCChHHHHHHHHHHHH-hCCcceEEEecchhh
Q 014571 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDE---GEVVAVDRSHNKVMDIQKLAAE-MGLKCITTYKLDALK 323 (422)
Q Consensus 255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~---g~V~A~D~s~~rl~~l~~~l~r-~g~~nv~~~~~Da~~ 323 (422)
.+...-.+...+|+++|.-.||..+...+... .+-+.+|+|..-++.-.+.+.+ +---.|..+++|-..
T Consensus 72 Eia~~~g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~l~v~~l~~~~~~ 144 (321)
T COG4301 72 EIASITGACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPGLEVNALCGDYEL 144 (321)
T ss_pred HHHHhhCcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCCCeEeehhhhHHH
Confidence 33334458899999999999999998776543 4788999999988655444443 321125566666543
No 444
>TIGR01557 myb_SHAQKYF myb-like DNA-binding domain, SHAQKYF class. This model describes a DNA-binding domain restricted to (but common in) plant proteins, many of which also contain a response regulator domain. The domain appears related to the Myb-like DNA-binding domain described by Pfam model pfam00249. It is distinguished in part by a well-conserved motif SH[AL]QKY[RF] at the C-terminal end of the motif.
Probab=21.78 E-value=3.2e+02 Score=20.46 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=33.0
Q ss_pred cccccCHHHHHHHHHH---hchhhH---HHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHH
Q 014571 11 PLLRWNPQVEEYFIRA---YGADHF---SRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAII 68 (422)
Q Consensus 11 ~~~~~~~~v~~~l~~~---~~~~~~---~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~ 68 (422)
|++.|.+|..+-|.++ ||...+ ..|++.+.. -+.|++++..-+...+
T Consensus 2 ~r~~WT~eeh~~Fl~ai~~~G~g~~a~pk~I~~~~~~-----------~~lT~~qV~SH~QKy~ 54 (57)
T TIGR01557 2 PRVVWTEDLHDRFLQAVQKLGGPDWATPKRILELMVV-----------DGLTRDQVASHLQKYR 54 (57)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcccchHHHHHHcCC-----------CCCCHHHHHHHHHHHH
Confidence 6789999999988886 576446 777765442 2447888877766553
No 445
>PRK07832 short chain dehydrogenase; Provisional
Probab=21.52 E-value=2.2e+02 Score=27.02 Aligned_cols=56 Identities=21% Similarity=0.179 Sum_probs=38.6
Q ss_pred ecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571 268 MCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~ 323 (422)
+..|.||...++++.+. ....|+.++++..+++.+.+.++..+...+.++..|.++
T Consensus 5 ItGas~giG~~la~~la~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (272)
T PRK07832 5 VTGAASGIGRATALRLAAQGAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD 61 (272)
T ss_pred EeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC
Confidence 34567788777776543 345889999998888877777766664445556677654
No 446
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=21.49 E-value=1.7e+02 Score=29.24 Aligned_cols=48 Identities=25% Similarity=0.255 Sum_probs=31.6
Q ss_pred CCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcC---ChHHHHHHHHHHHHhCCc
Q 014571 259 PQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDR---SHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 259 p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~---s~~rl~~l~~~l~r~g~~ 312 (422)
+++|++||=.++|+ |.-+.++|..++ .+|++++. ++.|++.+ +++|..
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G--~~vi~~~~~~~~~~~~~~~----~~~Ga~ 221 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRG--FEVYVLNRRDPPDPKADIV----EELGAT 221 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHH----HHcCCE
Confidence 56899998776543 223455566653 37999987 67776654 457765
No 447
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=21.23 E-value=2.4e+02 Score=27.97 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=33.5
Q ss_pred cCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571 257 LDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313 (422)
Q Consensus 257 L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n 313 (422)
....+|++||=.+||+ |.-+.++|..++ ..+|+++|.++.|++.++ ++|.+.
T Consensus 165 ~~~~~g~~VlV~G~G~vG~~aiqlak~~G-~~~Vi~~~~~~~~~~~a~----~lGa~~ 217 (343)
T PRK09880 165 AGDLQGKRVFVSGVGPIGCLIVAAVKTLG-AAEIVCADVSPRSLSLAR----EMGADK 217 (343)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcC-CcEEEEEeCCHHHHHHHH----HcCCcE
Confidence 3456899998765432 223345555543 237999999999987664 477643
No 448
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=21.20 E-value=58 Score=33.40 Aligned_cols=121 Identities=18% Similarity=0.129 Sum_probs=64.8
Q ss_pred eEEEecCCCChhHHHHHhcc------CCCcEEEEEcC-ChHHHHHHHHHHHHhCCcceEEE-ecchhhhhhccCCCCCCc
Q 014571 264 RILDMCAAPGGKTTAIASLL------RDEGEVVAVDR-SHNKVMDIQKLAAEMGLKCITTY-KLDALKAVRRKNESNDEP 335 (422)
Q Consensus 264 ~VLD~CAgpGgKT~~la~l~------~~~g~V~A~D~-s~~rl~~l~~~l~r~g~~nv~~~-~~Da~~~~~~~~~~~~~~ 335 (422)
.+|=++==-=|||+-|+.+. +.+-.+.|.|- ...-++.++...+|.|++-|.-. -.|.......-..
T Consensus 141 Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~----- 215 (340)
T COG0552 141 VILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQ----- 215 (340)
T ss_pred EEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHH-----
Confidence 34433333336888887653 23456778884 45678999999999998755521 2233222111000
Q ss_pred cccCCCCCCCCCceeecCCccccCch-------hhhhh--------CCCCCc-cccc-cCcccchhHHHHHHHHHHhccc
Q 014571 336 NMCNSKDNNYITSQTSDSMKLHKEVP-------SIAAE--------GLNGDK-SCKE-KGRTCGECGMAQEEINALVVGL 398 (422)
Q Consensus 336 ~~~~~~~~~~FD~VLvDaPCSg~G~l-------~~lrr--------~p~~~~-~w~~-~~~~~~~l~~~Q~~IL~~a~~l 398 (422)
......+|.||+|. .|.+ ..+.| .|++.+ .+-. ... ....+-.|.++...+.++
T Consensus 216 ----~Akar~~DvvliDT----AGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAt-tGqnal~QAk~F~eav~l 286 (340)
T COG0552 216 ----AAKARGIDVVLIDT----AGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDAT-TGQNALSQAKIFNEAVGL 286 (340)
T ss_pred ----HHHHcCCCEEEEeC----cccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcc-cChhHHHHHHHHHHhcCC
Confidence 01134589999995 3331 11221 111110 1111 111 245777899999999884
No 449
>PRK14124 tRNA pseudouridine synthase B; Provisional
Probab=21.15 E-value=1.5e+02 Score=29.99 Aligned_cols=40 Identities=30% Similarity=0.497 Sum_probs=29.7
Q ss_pred CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEe
Q 014571 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVS 163 (422)
Q Consensus 123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~ 163 (422)
.+.+.++...+.++..|+.+..+++.... .+..++.|.++
T Consensus 228 lp~v~l~~~~~~~i~~G~~i~~~~~~~~~-~~~~~~~v~v~ 267 (308)
T PRK14124 228 LPKVVIHQESTEKILNGSQIYLEMVKEWD-NFKKDDVVRVF 267 (308)
T ss_pred CceEEeCHHHHHHHHCCCccccccccccc-ccCCCCEEEEE
Confidence 57788999999999999999776654432 24556677776
No 450
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=21.10 E-value=67 Score=31.66 Aligned_cols=49 Identities=27% Similarity=0.283 Sum_probs=32.0
Q ss_pred CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310 (422)
Q Consensus 260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g 310 (422)
..|+++||++|||--.- +.....---.|+..|..+.-.+.+++-++.-|
T Consensus 55 ~~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~ 103 (256)
T PF01234_consen 55 VKGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQNREELEKWLRKEG 103 (256)
T ss_dssp S-EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHHHHHHHHHHHTT-T
T ss_pred cCCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHhhHHHHHHHHCCCC
Confidence 46889999999993321 22222223479999999999998888876644
No 451
>PRK06198 short chain dehydrogenase; Provisional
Probab=21.01 E-value=2.4e+02 Score=26.29 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=41.9
Q ss_pred CCCeEEEecCCCChhHHHHHhccCC-CcE-EEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRD-EGE-VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~-~g~-V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
.+.+|| +..|.|+-..++++.+.. ..+ |+.++++..+.......++..+. .+.++..|.+..
T Consensus 5 ~~k~vl-ItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~ 68 (260)
T PRK06198 5 DGKVAL-VTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSDV 68 (260)
T ss_pred CCcEEE-EeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCH
Confidence 355666 556778888888876532 345 99999998877766666654442 466677787653
No 452
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.96 E-value=61 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.318 Sum_probs=33.5
Q ss_pred CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308 (422)
Q Consensus 261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r 308 (422)
.|.+||++++|-=+.+-.|...-.+...|.-.|-++.-++.+++...+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~ 76 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNS 76 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhc
Confidence 467888888775554444444334567899999999988887765544
No 453
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=20.84 E-value=2.8e+02 Score=28.37 Aligned_cols=39 Identities=31% Similarity=0.411 Sum_probs=26.9
Q ss_pred CCCCeEEEecCCCC-hhHHHHHhcc------CCCcEEEEEcCChHH
Q 014571 260 QKGERILDMCAAPG-GKTTAIASLL------RDEGEVVAVDRSHNK 298 (422)
Q Consensus 260 ~pg~~VLD~CAgpG-gKT~~la~l~------~~~g~V~A~D~s~~r 298 (422)
..+..++-++..|| |||+.+..+. +.+--|+++|.+...
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~ 98 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTR 98 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccc
Confidence 34567888888888 7998765432 234578888887654
No 454
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=20.83 E-value=1.3e+02 Score=32.02 Aligned_cols=52 Identities=27% Similarity=0.400 Sum_probs=33.5
Q ss_pred CCCCCeEEEecCCCC-hhHHHHHhccC----CCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571 259 PQKGERILDMCAAPG-GKTTAIASLLR----DEGEVVAVDRSHNKVMDIQKLAAEMGLK 312 (422)
Q Consensus 259 p~pg~~VLD~CAgpG-gKT~~la~l~~----~~g~V~A~D~s~~rl~~l~~~l~r~g~~ 312 (422)
..+|..+| ++..|| |||+.+.+.+. +.++|+=++..+ ..+.++.+++++|+.
T Consensus 91 i~~Gsvil-I~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rlg~~ 147 (454)
T TIGR00416 91 IVPGSLIL-IGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRLGLP 147 (454)
T ss_pred ccCCeEEE-EEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHcCCC
Confidence 55676666 788888 99998776532 223454444432 345677788898863
No 455
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=20.56 E-value=1.8e+02 Score=28.42 Aligned_cols=48 Identities=23% Similarity=0.260 Sum_probs=31.4
Q ss_pred hcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571 256 ALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK 304 (422)
Q Consensus 256 ~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~ 304 (422)
....++|++||-.++|. |.-+.++|+.++ ...|++++.+..|.+.+++
T Consensus 162 ~~~~~~~~~VlI~g~g~vg~~~iqlak~~g-~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 162 LAGIKPGSTVAVIGAGPVGLCAVAGARLLG-AARIIAVDSNPERLDLAKE 210 (347)
T ss_pred hcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEeCCHHHHHHHHH
Confidence 44677899999954321 334556666653 2478999988888765543
No 456
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=20.55 E-value=2e+02 Score=28.12 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=38.7
Q ss_pred ecCCCChhHHHHHhccCCC---cEEEEEcCChHH---HHHHHHHHHHhCC-------cceEEEecchhh
Q 014571 268 MCAAPGGKTTAIASLLRDE---GEVVAVDRSHNK---VMDIQKLAAEMGL-------KCITTYKLDALK 323 (422)
Q Consensus 268 ~CAgpGgKT~~la~l~~~~---g~V~A~D~s~~r---l~~l~~~l~r~g~-------~nv~~~~~Da~~ 323 (422)
++.|+|+-..++++.+-.. .+|+++.++... .+++++.++..++ ..+.++.+|.+.
T Consensus 4 vtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~~~~~D~~~ 72 (367)
T TIGR01746 4 LTGATGFLGAYLLEELLRRSTQAKVICLVRAASEEHAMERLREALRSYRLWQEDLARERIEVVAGDLSE 72 (367)
T ss_pred EeccchHHHHHHHHHHHhCCCCCEEEEEEccCCHHHHHHHHHHHHHHhCCCCchhhhCCEEEEeCCcCc
Confidence 5678899999998866433 479999887653 3455555555543 358888888654
No 457
>PRK11524 putative methyltransferase; Provisional
Probab=20.35 E-value=73 Score=31.38 Aligned_cols=71 Identities=17% Similarity=0.006 Sum_probs=42.5
Q ss_pred cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHH
Q 014571 312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEI 391 (422)
Q Consensus 312 ~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~I 391 (422)
.+..++++|+....... ..++||.|+.|||--.... .. +. ...|.. .++...-.+.
T Consensus 7 ~~~~i~~gD~~~~l~~l-------------~~~siDlIitDPPY~~~~~---~~-~~--~~~~~~-----~~~~~~l~~~ 62 (284)
T PRK11524 7 EAKTIIHGDALTELKKI-------------PSESVDLIFADPPYNIGKN---FD-GL--IEAWKE-----DLFIDWLYEW 62 (284)
T ss_pred CCCEEEeccHHHHHHhc-------------ccCcccEEEECCCcccccc---cc-cc--cccccH-----HHHHHHHHHH
Confidence 45678999999865321 1356999999999843111 10 11 112321 2344444567
Q ss_pred HHHhcc-ceeccEEEe
Q 014571 392 NALVVG-LRIQKVLVL 406 (422)
Q Consensus 392 L~~a~~-lr~~~~~~~ 406 (422)
+..+.. |+.+|.+++
T Consensus 63 l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 63 IDECHRVLKKQGTMYI 78 (284)
T ss_pred HHHHHHHhCCCcEEEE
Confidence 777755 788999887
No 458
>PRK06180 short chain dehydrogenase; Provisional
Probab=20.25 E-value=2.4e+02 Score=26.92 Aligned_cols=58 Identities=21% Similarity=0.119 Sum_probs=39.6
Q ss_pred CCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571 262 GERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324 (422)
Q Consensus 262 g~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~ 324 (422)
+.+|| +..|.|+...++++.+. ...+|+++++++.+++.+.+. .-.++.++..|.+..
T Consensus 4 ~~~vl-VtGasggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~----~~~~~~~~~~D~~d~ 62 (277)
T PRK06180 4 MKTWL-ITGVSSGFGRALAQAALAAGHRVVGTVRSEAARADFEAL----HPDRALARLLDVTDF 62 (277)
T ss_pred CCEEE-EecCCChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhh----cCCCeeEEEccCCCH
Confidence 34566 66778888888887653 345899999998887655442 223567777777653
Done!