RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 014571
(422 letters)
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 117 bits (294), Expect = 5e-30
Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 5/154 (3%)
Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAM--MSRAGIFRASEGIAVDMHNRIFQLPSFY 236
V+ + + ++ + A+ E + + + P +
Sbjct: 21 TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLY- 79
Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
G + LQ+ S + A LDP G ++D CAAPG KT+ +A+LL+++G++ A D
Sbjct: 80 --RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA 137
Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
++ + L A G+ C + D L
Sbjct: 138 KRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171
Score = 38.1 bits (89), Expect = 0.004
Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 4/64 (6%)
Query: 47 CIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVK 106
+RVNTLKT +DDV+ + G S ASS+ P + ++
Sbjct: 13 FVRVNTLKTCSDDVVDYF----KRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFP 68
Query: 107 GSGP 110
Sbjct: 69 AQTD 72
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 118 bits (298), Expect = 1e-29
Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+ + +F EG+I +Q S V + LDP+ GE ++D+ AAPGGKT
Sbjct: 218 VPTILKIKGPYNFDTSSAF---NEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKT 274
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
T +A L++++G++ A D ++ ++ MG+K + DA KA E
Sbjct: 275 THLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328
Score = 44.2 bits (105), Expect = 5e-05
Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)
Query: 3 LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQ 62
L +Y P W + E G + R S IRVNTLK ++VI
Sbjct: 151 LEWKYLA-P--SW---LIERVKGILGDETEDFFRSVNKRHEWIS-IRVNTLKANVEEVIG 203
Query: 63 KL 64
+L
Sbjct: 204 EL 205
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 106 bits (267), Expect = 2e-26
Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
I P + L G Q++ S++ L+P++ + ILDMCAAPGGKTT +A L++++G
Sbjct: 53 SIGSTPEY---LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKG 109
Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+VAV+ S + ++ MG+ D K ++
Sbjct: 110 TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEI 155
Score = 34.5 bits (80), Expect = 0.053
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 45 YSCIRVNTLKTTTDDVIQKL 64
IRVNTLK + + ++L
Sbjct: 10 MQFIRVNTLKINPEVLKKRL 29
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 103 bits (260), Expect = 3e-25
Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)
Query: 219 EGIAVDMHN-RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
EG + I P F L G I++Q S+ ALDP+ GE + DM AAPGGKT+
Sbjct: 78 EGFCLTREPFSITSTPEF---LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTS 134
Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
+A L+R++G + A D N++ + + + +G+ + + +L
Sbjct: 135 YLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180
Score = 44.5 bits (106), Expect = 3e-05
Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)
Query: 1 MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
+D R YS L + + + +G + RI++A+ +P C RVNTLK + D+
Sbjct: 8 LDKLLRLGYSKLF------ADRYFQLWG-ERAIRIAEAMEKPL-PRCFRVNTLKISVQDL 59
Query: 61 IQKL 64
+++L
Sbjct: 60 VKRL 63
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 103 bits (259), Expect = 2e-24
Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
EG R P F G ++Q + LDP+ GER+LD+ AAPGGKTT
Sbjct: 62 EGFYYPEEARPGPHPFF---YAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
+A+ + +G ++A + +V + + G T
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVT 156
Score = 35.0 bits (81), Expect = 0.038
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 21 EYFIRAYGA---DHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
+ F+ + F KALT +RVNTLK + +
Sbjct: 4 KAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRI 49
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 101 bits (253), Expect = 1e-23
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%)
Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
+ + ++ + LP F +G + +Q+ + L PQ GE ILD+CAAPGGKT
Sbjct: 205 YPDAVRLETPAPVHALPGF---EDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT 261
Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
T I + E +VVAVD ++ + +G+K T + D
Sbjct: 262 THILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYP 307
Score = 35.2 bits (82), Expect = 0.033
Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
Query: 2 DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKAL-TRPSCYSCIRVNTLKTTTDDV 60
RY + P W + + +AY + + I +A RP +R+N + D
Sbjct: 138 ASDARYLH-P--SW---LLKRLQKAYP-EQWQSIVEANNQRPP--MWLRINRTHHSRDSW 188
Query: 61 IQKL 64
+ L
Sbjct: 189 LALL 192
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 100 bits (251), Expect = 2e-23
Identities = 21/95 (22%), Positives = 43/95 (45%)
Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
G + Q +++ A + GE++LD+CAAPGGK+T +A+ ++ +G +V + +
Sbjct: 83 QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKR 142
Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
+ + G+ + V + D
Sbjct: 143 AKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177
Score = 40.0 bits (94), Expect = 0.001
Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 1/45 (2%)
Query: 20 EEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
+ + G + S R N LK D++Q
Sbjct: 13 IKKYRLLLGEEASDFFSALEQGSV-KKGFRWNPLKPAGLDMVQTY 56
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 97.5 bits (243), Expect = 3e-22
Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRD 285
+ L G ++Q S++ AL D +R++D+ AAPG KTT I++ + +
Sbjct: 85 PLGSTAEH---LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN 141
Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
EG ++A + S ++V + + G+ + D E D
Sbjct: 142 EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189
Score = 36.2 bits (84), Expect = 0.019
Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 6/49 (12%)
Query: 21 EYFIRAY-----GADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
+ F+ F A RP IRVNTLK + D +Q
Sbjct: 10 DAFLTQMREAMPSTLSFDDFLAACQRPL-RRSIRVNTLKISVADFLQLT 57
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.8 bits (147), Expect = 5e-10
Identities = 55/358 (15%), Positives = 97/358 (27%), Gaps = 149/358 (41%)
Query: 1 MDLSGRYSYSPLLR--WNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTD 58
MDL Y S + WN + + +F YG FS I + N + T
Sbjct: 1633 MDL---YKTSKAAQDVWN-RADNHFKDTYG---FS-ILD---------IVINNPVNLTIH 1675
Query: 59 DVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYE 118
+K I +N + + + V G+L+ I K H+ Y +
Sbjct: 1676 FGGEKGKRIRENYSAMIFE--TIVDGKLKTEKI-------------FKEINEHSTSYTFR 1720
Query: 119 PDKPPKEVIVSRKCAEAVLRG---AQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGW 175
+ + +L Q P + + A
Sbjct: 1721 SE-------------KGLLSATQFTQ---PALTL------------MEKA---------- 1742
Query: 176 GLGITRGTVLQ--GSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLP 233
L+ G F +G +G+ A+ S A +
Sbjct: 1743 ---AFE--DLKSKGLIPADATF--AGHSLGEYAALASLADVM------------------ 1777
Query: 234 SFYDVLE-----GEIFLQNLP-------SIVTAHALDPQK------GERILDMCAAPG-- 273
S ++E G +Q S A++P + E + + G
Sbjct: 1778 SIESLVEVVFYRGM-TMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 274 -------------GKTTAIASLLRDEGEVVAVDR-----SHNKVM--DIQKLAAEMGL 311
+ A G++ A+D + K+ DI +L + L
Sbjct: 1837 TGWLVEIVNYNVENQQYVAA------GDLRALDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Score = 37.3 bits (86), Expect = 0.011
Identities = 51/322 (15%), Positives = 80/322 (24%), Gaps = 143/322 (44%)
Query: 186 QGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRI-FQLPSFYDVLEGEIF 244
QGSQ QG M + A D+ NR Y +I
Sbjct: 1624 QGSQE-------------QG---MGMD--LYKTSKAAQDVWNRADNHFKDTYGFSILDIV 1665
Query: 245 LQNLPSIVTAHALDPQKGERI----LDMC---------------------------AAPG 273
+ N P +T H +KG+RI M +
Sbjct: 1666 INN-PVNLTIH-FGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEK 1723
Query: 274 G---KT--T---------AIASLLRDE--------------GEVVAVDRSHNKVMDIQKL 305
G T T A L+ + GE A L
Sbjct: 1724 GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAA-------------L 1770
Query: 306 AAE---MGLKCITTYKLDALKAVR-R-KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
A+ M ++ ++ V R P + N + + +
Sbjct: 1771 ASLADVMSIE-------SLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRV-----A 1818
Query: 361 PSIAAEGLNG--DKSCKEKGRTCGECGMAQEEI---NA----LVVG-------------- 397
S + E L ++ K G EI N V
Sbjct: 1819 ASFSQEALQYVVERVGKRTGWLV--------EIVNYNVENQQYVAAGDLRALDTVTNVLN 1870
Query: 398 -LRIQKVLVLTALIESFLMLPV 418
+++QK+ + L +S + V
Sbjct: 1871 FIKLQKI-DIIELQKSLSLEEV 1891
Score = 33.9 bits (77), Expect = 0.11
Identities = 24/138 (17%), Positives = 41/138 (29%), Gaps = 35/138 (25%)
Query: 226 HNRI---FQLPS----FYDVLEGEIFLQNLPSIVTAHALD--PQ-KGE---RILDMCA-- 270
H + +P+ L+ E F + LP A D P E + L +
Sbjct: 13 HGSLEHVLLVPTASFFIASQLQ-EQFNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSL 71
Query: 271 APGGKTTAIASLLRDEGEVVAVDRSHNKVM---DIQKLAAEMG----------LKCITTY 317
K +L + + N + DI LAA++ + I Y
Sbjct: 72 VEPSKVGQFDQVLN-----LCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 318 KLDALKAVRRKNESNDEP 335
+ A +R +
Sbjct: 127 -ITARIMAKRPFDKKSNS 143
Score = 33.1 bits (75), Expect = 0.21
Identities = 20/128 (15%), Positives = 38/128 (29%), Gaps = 25/128 (19%)
Query: 76 ADVASSVKGRLQNGTI----SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRK 131
+ + L + + QIP V+ T D G + + +
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIP-----VY------DTFD-GSDLRVLSGSIS--ER 478
Query: 132 CAEAVLRGAQVYVPGVMACS-SHV---EKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQG 187
+ ++R V +H+ G + V + DG G+ + L
Sbjct: 479 IVDCIIR-LPVKWETTTQFKATHILDFGPGGASGLGVLTHR-NKDGT-GVRVIVAGTLDI 535
Query: 188 SQTDPYYF 195
+ D Y F
Sbjct: 536 NPDDDYGF 543
>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP
assembly, X-linked dyskeratosis congenita; 2.80A
{Saccharomyces cerevisiae}
Length = 195
Score = 53.9 bits (129), Expect = 1e-08
Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 33/113 (29%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K ++V AV GA++ +PG++ +E D + +
Sbjct: 76 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVL--------------------- 114
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
G I A MS + G+ + R Y
Sbjct: 115 -----------ITTKGEAIAVAIAQMSTVDLASCDHGVVASV-KRCIMERDLY 155
>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown
function; 1.73A {Pyrococcus horikoshii}
Length = 179
Score = 47.1 bits (112), Expect = 2e-06
Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 31/105 (29%)
Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
K P+ V+V +L GA V PG++ +++GD V V
Sbjct: 92 KWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFV------------------ 133
Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
E+ G + G A+MS + + G AV +
Sbjct: 134 -------------VEEKYGRPLAIGIALMSGKVMKEKNRGKAVKV 165
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB:
2gh1_A
Length = 284
Score = 47.2 bits (112), Expect = 4e-06
Identities = 9/63 (14%), Positives = 20/63 (31%)
Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
S + K I+D G + LL + + +D + + ++L +
Sbjct: 11 SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70
Query: 310 GLK 312
Sbjct: 71 PYD 73
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 45.9 bits (109), Expect = 4e-06
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 1/83 (1%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
+ AL P+ E + D+ G + V + S + I A +G
Sbjct: 15 ALAISALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLG 73
Query: 311 LKCITTYKLDALKAVRRKNESND 333
+ + A +A ++ D
Sbjct: 74 VSDRIAVQQGAPRAFDDVPDNPD 96
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 46.9 bits (111), Expect = 5e-06
Identities = 12/55 (21%), Positives = 21/55 (38%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307
A A + GE+IL++ G + +A + G V +D + L
Sbjct: 35 IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ 89
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 45.7 bits (108), Expect = 1e-05
Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
H G ++L+ G +T +A D E+ ++D S + ++ + G+K
Sbjct: 29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIK 87
Query: 313 CITTYKLDAL 322
+ + +
Sbjct: 88 NVKFLQANIF 97
>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR
structure initiative; 2.10A {Thermoplasma acidophilum
dsm 1728} SCOP: b.122.1.1 d.17.6.2
Length = 153
Score = 44.0 bits (104), Expect = 1e-05
Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 32/102 (31%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
V V +L G+ ++ PG+++ + KGD++ V
Sbjct: 71 NIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFV--------------------- 109
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
G +I G A M + G A +
Sbjct: 110 -----------KSSKGYFIAVGMAEMDAGEVMATKRGKAARI 140
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC,
structural genomics, protein structure initiative; HET:
SAM; 2.72A {Aquifex aeolicus}
Length = 219
Score = 42.4 bits (100), Expect = 9e-05
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
++G +LD+ G ++ ++ ++G+V A+D V + ++GLK +
Sbjct: 32 EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91
Query: 316 TYKLDA 321
K +
Sbjct: 92 VLKSEE 97
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: PLM; 1.39A {Bordetella parapertussis}
Length = 305
Score = 42.8 bits (100), Expect = 1e-04
Identities = 22/157 (14%), Positives = 45/157 (28%), Gaps = 20/157 (12%)
Query: 155 EKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGI 214
+G+V VA + L G + R +L + + R + A+ +
Sbjct: 32 LQGNVPGFDVARQIELLHGLAESELGR-FLLLYRGLNAEWTHRLVTHQPGSGALAPLERV 90
Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
F + R F + L + + G + +
Sbjct: 91 FYERLPAVLATRERH------------GHFRRALQRHL-------RPGCVVASVPCGWMS 131
Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ A+ ++V +D + +LAA L
Sbjct: 132 ELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL 168
>1xxl_A YCGJ protein; structural genomics, protein structure initiative,
PSI, NEW YORK SGX research center for structural
genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP:
c.66.1.41 PDB: 2glu_A*
Length = 239
Score = 41.3 bits (97), Expect = 2e-04
Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
+ + R+LD+ A G A + + E + VD + V A E G++
Sbjct: 13 MIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE 69
Query: 313 CITTYKLDA 321
+ + A
Sbjct: 70 NVRFQQGTA 78
>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine,
structural genomics structure initiative, PSI; HET: SAM;
2.20A {Clostridium thermocellum atcc 27405}
Length = 197
Score = 39.9 bits (93), Expect = 5e-04
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
++G+ ++D G T +ASL+ + G V D + + K ++ L T
Sbjct: 21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80
Query: 320 D 320
D
Sbjct: 81 D 81
>2aus_C Pseudouridine synthase; isomerase, structural protein,
isomerase-structural protein; 2.10A {Pyrococcus abyssi}
PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A*
2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A
Length = 334
Score = 39.6 bits (93), Expect = 0.001
Identities = 25/113 (22%), Positives = 44/113 (38%), Gaps = 33/113 (29%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
++ + AV GA + VPG++ ++ ++KGD+VA+
Sbjct: 251 PKIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAI--------------------- 289
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
+ G AMMS + S+GIAVD+ ++F +Y
Sbjct: 290 -----------MTLKDELVALGKAMMSTQEMIERSKGIAVDVE-KVFMPRDWY 330
>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock
proteins, 23S ribosomal RNA; HET: SAM; 1.50A
{Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*
Length = 180
Score = 38.2 bits (90), Expect = 0.002
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
+ G ++D+ AAPGG + + + + +G ++A D
Sbjct: 21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACD 54
>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase,
transferase; HET: SAH PG4; 2.70A {Rhodobacter
capsulatus}
Length = 204
Score = 38.3 bits (89), Expect = 0.002
Identities = 14/62 (22%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
+T AL P++GE + D+ G + G + ++ +++ +IQK G
Sbjct: 45 ALTLAALAPRRGELLWDIGGGSGSVSVEWC---LAGGRAITIEPRADRIENIQKNIDTYG 101
Query: 311 LK 312
L
Sbjct: 102 LS 103
>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex,
box H/ACA, snoRNP, pseudouridine synthase, RNA
modification; 1.95A {Methanocaldococcus jannaschii}
SCOP: b.122.1.1 d.265.1.2
Length = 357
Score = 39.2 bits (92), Expect = 0.002
Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 33/113 (29%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
K+V+V +A+ GA VYV G+ S + KG+ V V
Sbjct: 270 KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLV--------------------- 308
Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
G + G A+M+ I A +G+AVD+ R++ Y
Sbjct: 309 -----------ETLKGEAVAVGKALMNTKEILNADKGVAVDVE-RVYMDRGTY 349
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase,
structural genomics, joint cente structural genomics,
JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP:
c.66.1.41
Length = 260
Score = 38.6 bits (90), Expect = 0.002
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
+ E +LD+ G A A +VVA D + + + + G + +
Sbjct: 32 IAALKGNEEVLDVATGGG--HVANA-FAPFVKKVVAFDLTEDILKVARAFIEGNGHQQVE 88
Query: 316 TYKLDA 321
+ DA
Sbjct: 89 YVQGDA 94
>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics,
NPPSFA, national project on structural and functional
analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1
d.17.6.4 PDB: 2cx1_A* 1zs7_A
Length = 187
Score = 37.9 bits (88), Expect = 0.002
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 117 YEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
+ D V+V + A A+ +GA + +PGV+ +GDVVA
Sbjct: 86 FGVDWLKGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAA 131
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250,
NESG, structural genomics, PSI-2; HET: SAM; 1.68A
{Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A*
3t7r_A* 3t7t_A*
Length = 267
Score = 38.3 bits (89), Expect = 0.003
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
+ + + I D+ GG+T +A + G+V +D + + A + GL+
Sbjct: 39 SFIDNLTEKSLIADIGCGTGGQTMVLAGHV--TGQVTGLDFLSGFIDIFNRNARQSGLQN 96
Query: 314 -ITTYKLDALK 323
+T
Sbjct: 97 RVTGIVGSMDD 107
>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics
consortium (NESG), PSI-2, protein structure initiative,
unknown function; NMR {Synechocystis} PDB: 3mer_A
Length = 202
Score = 37.5 bits (87), Expect = 0.003
Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAA 307
P+ + +IL + G A L G EV AVD+S + ++LA
Sbjct: 17 PNDFLVSVANQIPQGKILCLAEGEG----RNACFLASLGYEVTAVDQSSVGLAKAKQLAQ 72
Query: 308 EMGLKCITTYKLDAL 322
E G+K ITT + +
Sbjct: 73 EKGVK-ITTVQSNLA 86
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 38.1 bits (88), Expect = 0.003
Identities = 12/70 (17%), Positives = 26/70 (37%), Gaps = 1/70 (1%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK-LAAEMGLKC 313
+ G IL++ G ++ I L +G + V+R + + L+ +
Sbjct: 104 MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGN 163
Query: 314 ITTYKLDALK 323
+ T + D
Sbjct: 164 VRTSRSDIAD 173
>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI,
intermolecular contacts, R specificity, tetramer,
disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB:
3lga_A* 3lhd_C*
Length = 255
Score = 38.1 bits (88), Expect = 0.003
Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 13/124 (10%)
Query: 210 SRAGIFR------ASEGIAVDMHNRI-FQL--PSFYDVLE----GEIFLQNLPSIVTAHA 256
+ GI + + G A+ H F++ P D L+ G + + +
Sbjct: 29 TDLGILKLEEIIGRNFGEAIKSHKGHEFKILRPRIVDYLDKMKRGPQIVHPKDAALIVAY 88
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
G+ I++ G T +A+++ EG VV+ + + + G T
Sbjct: 89 AGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVT 148
Query: 317 YKLD 320
KL
Sbjct: 149 IKLK 152
>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann
superfamily, S-adenosyl-L-M (SAM) binding, nucleolus;
HET: SAM; 1.73A {Aeropyrum pernix}
Length = 233
Score = 37.8 bits (87), Expect = 0.003
Identities = 10/56 (17%), Positives = 26/56 (46%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
L ++G+RIL + A G + ++ ++ G + V+ + + D+ + +
Sbjct: 69 GLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRD 124
>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance,
transferase; HET: SAH; 1.48A {Escherichia coli} PDB:
2xva_A* 4dq0_A* 2i6g_A*
Length = 199
Score = 37.5 bits (87), Expect = 0.004
Identities = 13/69 (18%), Positives = 31/69 (44%), Gaps = 5/69 (7%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK 312
A+ K + LD+ G + +A+ G +V A D++ + +++++ + L
Sbjct: 25 LEAVKVVKPGKTLDLGCGNGRNSLYLAAN----GYDVDAWDKNAMSIANVERIKSIENLD 80
Query: 313 CITTYKLDA 321
+ T +D
Sbjct: 81 NLHTRVVDL 89
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1,
putative methyltransferase; 1.90A {Anabaena variabilis
atcc 29413}
Length = 279
Score = 37.8 bits (88), Expect = 0.004
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
L+PQ GE ILD+ G T IA + EV+ D +
Sbjct: 52 LLNPQPGEFILDLGCGTGQLTEKIA---QSGAEVLGTDNAAT 90
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A
{Lechevalieria aerocolonigenes}
Length = 273
Score = 37.8 bits (88), Expect = 0.005
Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK 312
LD + G+R+LD+ G +A V + S +V A GL
Sbjct: 54 IALLDVRSGDRVLDVGCGIGKPAVRLA---TARDVRVTGISISRPQVNQANARATAAGLA 110
Query: 313 CITTYKL-DALK 323
T+ DA+
Sbjct: 111 NRVTFSYADAMD 122
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon
SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A
Length = 383
Score = 37.4 bits (86), Expect = 0.007
Identities = 11/43 (25%), Positives = 19/43 (44%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
T A +G +LD+ G + L+ + G+V+ VD
Sbjct: 75 TLPADGSLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDML 117
>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET:
PGE GOL; 2.00A {Clostridium acetobutylicum}
Length = 209
Score = 36.8 bits (85), Expect = 0.007
Identities = 8/60 (13%), Positives = 20/60 (33%), Gaps = 2/60 (3%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
+ + + +LD A +I D + ++ S ++ + + E K
Sbjct: 16 KYCNESNLDKTVLDCGAGGDLPPLSIFV--EDGYKTYGIEISDLQLKKAENFSRENNFKL 73
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics,
PSI-2, protein ST initiative; 1.95A {Haemophilus
influenzae}
Length = 286
Score = 37.3 bits (86), Expect = 0.007
Identities = 14/77 (18%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAA 307
A ++LD+ G + ++ L G +V + D + N + + +
Sbjct: 108 IHGDVVDAAKIISPCKVLDLGCGQGRNSLYLSLL----GYDVTSWDHNENSIAFLNETKE 163
Query: 308 EMGLKCITTYKLDALKA 324
+ L I+T D A
Sbjct: 164 KENLN-ISTALYDINAA 179
>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA
PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*
Length = 375
Score = 37.0 bits (85), Expect = 0.008
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
G +D+ A PGG T L++ V +VD
Sbjct: 209 LANGMWAVDLGACPGGWT---YQLVKRNMWVYSVDNG 242
>3r90_A Malignant T cell-amplified sequence 1; structural genomics
consortium, surface entropy reduction, S binding
protein; 1.70A {Homo sapiens}
Length = 188
Score = 36.1 bits (83), Expect = 0.008
Identities = 15/105 (14%), Positives = 30/105 (28%), Gaps = 34/105 (32%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSH---VEKGDVVAVSVAVEQPTLDGGWGLGIT 180
V + + VL GA + PG+ + + +VA+
Sbjct: 93 PHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMA---------------- 136
Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
+ + G MS I + ++GI ++
Sbjct: 137 ---------------AGAAHALCVGVMKMSAEDIEKVNKGIGIEN 166
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.30A {Bacteroides thetaiotaomicron}
PDB: 3t0i_A* 3svz_A* 3sxj_A*
Length = 257
Score = 36.8 bits (85), Expect = 0.009
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ + +I D+ GG+T +A + +G++ +D + + + A +
Sbjct: 39 SFINELTDDAKIADIGCGTGGQTLFLADYV--KGQITGIDLFPDFIEIFNENAVKANC 94
>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans
agrobacterium tumefaciens, structural genomics, PSI-2;
HET: SAH; 1.95A {Agrobacterium tumefaciens str}
Length = 259
Score = 36.8 bits (85), Expect = 0.010
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ ++ D+ PG T + + +D
Sbjct: 28 QVPLERVLNGYDLGCGPGNSTELLTDRYGV-NVITGIDSD 66
>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine,
nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*
Length = 298
Score = 36.7 bits (84), Expect = 0.012
Identities = 15/99 (15%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVT--AHALDPQKGERILDMCAAPGGKTTAIASLLRD 285
+ + S ++ L F ++ A ++GER + + P T + S +
Sbjct: 87 EVIESDSPWETLRSFYFYPRYLELLKNEAALGRFRRGERAVFIGGGPLPLTGILLSHVYG 146
Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
V V+ + +K+ +G+ + D
Sbjct: 147 -MRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVI 184
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.1 bits (85), Expect = 0.013
Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 79/248 (31%)
Query: 223 VDMHNRIFQ-LPSF--YDVLEGEIFLQNLPSIVTA-HALDPQKGERILDMCAAPG-GKTT 277
++ +R++ F Y+V + +L+ + A L P K I + G GKT
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLK----LRQALLELRPAKNVLIDGV---LGSGKTW 165
Query: 278 AIASLLRDE-------GEV----VAVDRSHNKVMDI-QKLAAEMGLK--------CITTY 317
+ ++ + S V+++ QKL ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 318 KLDALK-AVRRKNESNDEPNM-------CNSKDNNY--------ITSQTSDSMKLHKEVP 361
++ +++ +RR +S N N+K N +T T K+V
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT--TRF-----KQV- 277
Query: 362 SIAAEGLNGDKSCK------EKGRTCGECGMAQEEINALVVGLRIQKV---------LVL 406
+ L+ + T E + + + R Q + L
Sbjct: 278 ---TDFLSAATTTHISLDHHSMTLTPDE----VKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 407 TALIESFL 414
++I +
Sbjct: 331 -SIIAESI 337
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin
metabolism, S-adenosyl-methionine; 1.80A {Geobacter
metallireducens}
Length = 204
Score = 35.7 bits (82), Expect = 0.014
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
VT L Q + D+ A + AS L G + A++R+ + I+ +
Sbjct: 30 AVTLSKLRLQDDLVMWDI-GAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKFV 88
Query: 311 LKCITTYKLDALKA 324
+ +T + A +
Sbjct: 89 ARNVTLVEAFAPEG 102
>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA
binding, structural genomics, BSGC structure funded by
NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB:
2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A
Length = 227
Score = 35.8 bits (82), Expect = 0.016
Identities = 8/56 (14%), Positives = 25/56 (44%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
+ G+ +L + A G + ++ ++ EG++ ++ S + ++ + E
Sbjct: 65 GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEE 120
>1ve3_A Hypothetical protein PH0226; dimer, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, unknown function, NPPSFA; HET: SAM; 2.10A
{Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 227
Score = 35.3 bits (81), Expect = 0.021
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 4/90 (4%)
Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
Y + + + + ++ +K ++LD+ GG + + EVV VD
Sbjct: 11 PTYTDINSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLE---DYGFEVVGVD 67
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
S + + ++ A + DA K
Sbjct: 68 ISEDMIRKAREYAKSRESN-VEFIVGDARK 96
>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing,
snoRNP, structural genomics, BSGC structure funded by
NIH; 1.60A {Methanocaldococcus jannaschii} SCOP:
c.66.1.3 PDB: 1g8s_A
Length = 230
Score = 35.5 bits (81), Expect = 0.021
Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
+ ++ +IL + A+ G + +A + G V A++ + + ++ AE
Sbjct: 66 GLKVMPIKRDSKILYLGASAGTTPSHVADIADK-GIVYAIEYAPRIMRELLDACAE 120
>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet,
methyltransferase fold, structura genomics, transferase;
HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32
Length = 207
Score = 35.4 bits (81), Expect = 0.021
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 2/60 (3%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC 313
A++L +G+ + D+ A G + +LL EV+ V+ V + + E K
Sbjct: 42 AYSLGDIEGKVVADLGAGTGVL--SYGALLLGAKEVICVEVDKEAVDVLIENLGEFKGKF 99
>3lpm_A Putative methyltransferase; structural genomics, protein structure
initiative, NEW YORK structural genomix research
consortium, nysgxrc; 2.40A {Listeria monocytogenes}
Length = 259
Score = 34.8 bits (80), Expect = 0.041
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 14/58 (24%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEM 309
+ P + +I+D+C+ G I LL R + ++V V +IQ+ A+M
Sbjct: 42 KFSYLPIRKGKIIDLCSGNG----IIPLLLSTRTKAKIVGV--------EIQERLADM 87
>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase,
pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces
cerevisiae} PDB: 3uai_A
Length = 400
Score = 34.8 bits (80), Expect = 0.043
Identities = 10/39 (25%), Positives = 20/39 (51%)
Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
K ++V AV GA++ +PG++ +E D + +
Sbjct: 267 KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVL 305
>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI,
protein structure initiative, joint center for structu
genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13
Length = 277
Score = 34.6 bits (79), Expect = 0.046
Identities = 15/68 (22%), Positives = 28/68 (41%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
LD ++G+RI+D G +A + G+V A ++ + + GL
Sbjct: 106 MMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIER 165
Query: 315 TTYKLDAL 322
T K+ +
Sbjct: 166 VTIKVRDI 173
>3ege_A Putative methyltransferase from antibiotic biosyn pathway;
YP_324569.1, putative methyltransferase from antibiotic
BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}
Length = 261
Score = 34.5 bits (79), Expect = 0.054
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
L+ KG I D+ A GG + A+A V AV+ S
Sbjct: 29 LLNLPKGSVIADIGAGTGGYSVALA---NQGLFVYAVEPS 65
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2,
protein structure initiative; 2.80A {Bacillus
thuringiensis serovarkonkukian}
Length = 220
Score = 33.7 bits (77), Expect = 0.080
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS 295
+ + +L+ G + + L G V ++ S
Sbjct: 41 VVNKSFGNVLEFGVGTG----NLTNKLLLAGRTVYGIEPS 76
>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase
domain, structural genomics; HET: NHE CIT; 2.00A
{Corynebacterium glutamicum atcc 13032}
Length = 195
Score = 33.2 bits (76), Expect = 0.093
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 5/40 (12%)
Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHN 297
+G +ILD G I L +G +V+ D
Sbjct: 44 APRGAKILDAGCGQG----RIGGYLSKQGHDVLGTDLDPI 79
>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics,
midwest cente structural genomics, protein structure
initiative; 1.95A {Streptococcus thermophilus} PDB:
3lby_A*
Length = 185
Score = 32.9 bits (75), Expect = 0.095
Identities = 8/56 (14%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
++D G T L +V A D + + +++G++
Sbjct: 21 DDESIVVDATMGNGNDTAF---LAGLSKKVYAFDVQEQALGKTSQRLSDLGIENTE 73
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural
genomics, protein structure initiative, PSI-2; 1.95A
{Galdieria sulphuraria} SCOP: c.66.1.18
Length = 297
Score = 33.7 bits (77), Expect = 0.11
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 5/72 (6%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLK 312
A Q+ + LD+ A GG + R G + ++ + + ++ + GL
Sbjct: 75 AMTGVLQRQAKGLDLGAGYGGAARFLV---RKFGVSIDCLNIAPVQNKRNEEYNNQAGLA 131
Query: 313 CITTYKL-DALK 323
T K L+
Sbjct: 132 DNITVKYGSFLE 143
>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division,
structural genomics, protein structure initiative, PSI;
HET: SAM; 1.45A {Thermoplasma volcanium}
Length = 191
Score = 32.9 bits (76), Expect = 0.11
Identities = 9/34 (26%), Positives = 23/34 (67%), Gaps = 3/34 (8%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
+KG+ ++++ ++PGG T + SL +++++D
Sbjct: 24 RKGDAVIEIGSSPGGWTQVLNSLA---RKIISID 54
>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.70A {Plasmodium falciparum}
Length = 201
Score = 33.0 bits (76), Expect = 0.12
Identities = 8/35 (22%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVD 293
+K + ILD+ PG I ++ + +++ +D
Sbjct: 21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGID 55
>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein
structure initiative, PSI, center for eukaryotic
structural genomics; HET: MSE SAH T8N; 1.12A
{Saccharomyces cerevisiae}
Length = 299
Score = 33.1 bits (75), Expect = 0.15
Identities = 8/40 (20%), Positives = 18/40 (45%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ + ++D+ PG T +A L+ +++ D S
Sbjct: 31 EYHDGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLS 70
>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural
genomics, joint center for structural genom JCSG; HET:
SAH; 2.10A {Pseudomonas putida KT2440}
Length = 227
Score = 32.5 bits (74), Expect = 0.17
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHN 297
A+ ++ ER+LD+ G + L D G E V VD
Sbjct: 46 LAILGRQPERVLDLGCGEG----WLLRALADRGIEAVGVDGDRT 85
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 1.70A {Bacillus thuringiensis}
Length = 242
Score = 32.5 bits (74), Expect = 0.19
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)
Query: 234 SFYDVLEGEIFLQNL-PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAV 292
F++ E++ +I+ +K +LD+ G T ++ R + V V
Sbjct: 25 EFWNQNSQEMWDSGSRSTIIPFFEQYVKKEAEVLDVGCGDGYGTYKLS---RTGYKAVGV 81
Query: 293 DRSHN 297
D S
Sbjct: 82 DISEV 86
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 32.1 bits (74), Expect = 0.19
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 260 QKGERILDMCAAPGG--------KTTAIASLLRDEGEVVAVD 293
+ G R+LD AAPG A G V+ VD
Sbjct: 21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVD 62
>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM,
structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus
thermophilus} PDB: 2yr0_A
Length = 263
Score = 32.6 bits (74), Expect = 0.21
Identities = 5/44 (11%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ + + L++ G L+ +A+D
Sbjct: 30 MASAVHPKGEEPVFLELGVGTGRIA---LPLIARGYRYIALDAD 70
>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues,
protein repair, deamidation, post-translational
modification; HET: SAH; 1.80A {Thermotoga maritima}
SCOP: c.66.1.7 d.197.1.1
Length = 317
Score = 32.4 bits (74), Expect = 0.22
Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 12/53 (22%)
Query: 249 PSIVTAH---ALDPQKGERILDMCAAPG---GKTTAI-ASLLRDEGEVVAVDR 294
PS++ A + KG R+L++ G G A+ + ++ ++G VV+V+
Sbjct: 61 PSLM-ALFMEWVGLDKGMRVLEI----GGGTGYNAAVMSRVVGEKGLVVSVEY 108
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 2.90A {Escherichia coli} SCOP:
c.66.1.21
Length = 256
Score = 32.1 bits (73), Expect = 0.28
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGL 311
L + G RILD+ + G A RD G +D S ++ A E+G+
Sbjct: 29 GRVLRMKPGTRILDLGSGSGEMLCTWA---RDHGITGTGIDMSSLFTAQAKRRAEELGV 84
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics,
PSI-biology, protein structure in northeast structural
genomics; 2.20A {Methanosarcina mazei}
Length = 235
Score = 31.7 bits (72), Expect = 0.34
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
Q+ + ILD+ G + +A V +D + + + A GL T K
Sbjct: 29 QEDDEILDIGCGSGKISLELA---SKGYSVTGIDINSEAIRLAETAARSPGLNQKTGGKA 85
Query: 320 D 320
+
Sbjct: 86 E 86
>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA
methyltransferase, translation, cytoplasm, rRNA
processing; HET: HIC SAM AMP; 1.50A {Thermus
thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*
Length = 249
Score = 31.6 bits (72), Expect = 0.36
Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 5/72 (6%)
Query: 248 LPSIVTAHALDPQKGERILDMCAAPG--GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL 305
L S+ Q R+LD+ G G I R E E+V VD + KV +++
Sbjct: 67 LDSLTLLRLPLWQGPLRVLDLGTGAGFPGLPLKIV---RPELELVLVDATRKKVAFVERA 123
Query: 306 AAEMGLKCITTY 317
+GLK
Sbjct: 124 IEVLGLKGARAL 135
>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase
binding, liver cytosol, transferase-transferase
inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus}
PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A*
2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A
1r74_A* 2azt_A*
Length = 293
Score = 31.5 bits (71), Expect = 0.43
Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 14/93 (15%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
L R+LD+ G + +L +EG V +VD S + K +
Sbjct: 53 LRQHGCHRVLDVACGTG----VDSIMLVEEGFSVTSVDASDKMLKYALKERWNRRKE-PA 107
Query: 316 TYKLDALKAVRRKNESNDEP--------NMCNS 340
K +A + + + NS
Sbjct: 108 FDKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 140
>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP,
structural genomics, PSI, protein structure initiative;
2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB:
1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*
Length = 298
Score = 31.6 bits (71), Expect = 0.43
Identities = 13/102 (12%), Positives = 30/102 (29%), Gaps = 13/102 (12%)
Query: 216 RASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
G ++ + + + ++ + +G+ +LD+ GG
Sbjct: 30 IRERGRESRQRSKTINIRNANNFIKACLIRLYTK-----------RGDSVLDLGCGKGGD 78
Query: 276 TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY 317
GE VD + + D + A M + +
Sbjct: 79 LLKYER--AGIGEYYGVDIAEVSINDARVRARNMKRRFKVFF 118
>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase;
NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 243
Score = 31.3 bits (71), Expect = 0.47
Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 2/41 (4%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
L G RI+D+ G V+ +D S
Sbjct: 39 LPEVGGLRIVDLGCGFGWFCRWAHE--HGASYVLGLDLSEK 77
>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold,
alpha/beta/alpha sandwich structure, STRU genomics,
NPPSFA; 2.00A {Methanocaldococcus jannaschii}
Length = 215
Score = 31.0 bits (71), Expect = 0.57
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 12/53 (22%)
Query: 249 PSIVTAH---ALDPQKGERILDMCAAPG---GKTTAI-ASLLRDEGEVVAVDR 294
+V LD + G ++L++ G G A+ A ++ ++G VV+++R
Sbjct: 63 IHMV-GMMCELLDLKPGMKVLEI----GTGCGYHAAVTAEIVGEDGLVVSIER 110
>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural
genomics, protein structure initiative, pyrococc
furiosus, PSI-2; 2.20A {Pyrococcus furiosus}
Length = 230
Score = 31.0 bits (71), Expect = 0.62
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 7/43 (16%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRS 295
+ GE L++ G TA+ +L+ +V A +
Sbjct: 50 KTFLRGGEVALEIGT--G--HTAMMALMAEKFFNCKVTATEVD 88
>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase,
methyltransferase, methylation, trans
activator-transferase complex; HET: SAM; 2.00A
{Encephalitozoon cuniculi}
Length = 170
Score = 30.5 bits (69), Expect = 0.65
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 4/38 (10%)
Query: 258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ + + +LD+ + G I LR VV+ D +
Sbjct: 20 EGLEMKIVLDLGTSTG----VITEQLRKRNTVVSTDLN 53
>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted
transferase, predicted O-methyltransferase, PFAM
PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}
Length = 260
Score = 31.0 bits (70), Expect = 0.67
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 7/65 (10%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMG 310
A + + RI D+ A G A + ++ EV +RS ++
Sbjct: 29 ASLVADDRACRIADLGAGAG----AAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD 84
Query: 311 LKCIT 315
+
Sbjct: 85 NAAFS 89
>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Exiguobacterium sibiricum 255-15}
Length = 243
Score = 30.5 bits (69), Expect = 0.75
Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 7/65 (10%)
Query: 231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVV 290
Q YD L ++ + V + G+RI D+ G LL D EV
Sbjct: 6 QFAYVYDELMQDVPYPEWVAWVLEQV---EPGKRIADIGCGTG----TATLLLADHYEVT 58
Query: 291 AVDRS 295
VD S
Sbjct: 59 GVDLS 63
>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET:
SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*
Length = 218
Score = 30.3 bits (68), Expect = 0.99
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS 295
+L++ + G L V A+D S
Sbjct: 39 ERLRAGNIRGDVLELASGTG----YWTRHLSGLADRVTALDGS 77
>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer
[decarboxylating]; alpha and beta protein (A/B) class;
HET: MES; 2.30A {Methanocaldococcus jannaschii}
Length = 183
Score = 29.9 bits (68), Expect = 1.0
Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 5/66 (7%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIA-SLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
V+ L+ K + ++D+ G + + + V A+D + ++ A+
Sbjct: 25 AVSIGKLNLNKDDVVVDVGCGSG----GMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF 80
Query: 310 GLKCIT 315
+K
Sbjct: 81 NIKNCQ 86
>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM,
structural GEN consortium, SGC, transferase; HET: SAM;
2.50A {Homo sapiens} SCOP: c.66.1.13
Length = 336
Score = 30.5 bits (68), Expect = 1.1
Identities = 7/41 (17%), Positives = 20/41 (48%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+D G+ +L+ + GG + ++ + +G V++ +
Sbjct: 99 SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVR 139
>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP
binding, binding, capsid protein; HET: GTA SAH; 1.45A
{Yellow fever virus} PDB: 3evb_A* 3evc_A* 3evd_A*
3eve_A* 3eva_A*
Length = 277
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 9/70 (12%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKV------MDIQKLAAEMG 310
+ R++D+ GG A+ +G + D + +I +
Sbjct: 73 KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMNVQSLGWNIITFKDKTD 132
Query: 311 LKCITTYKLD 320
+ + K D
Sbjct: 133 IHRLEPVKCD 142
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 29.6 bits (66), Expect = 1.4
Identities = 10/82 (12%), Positives = 17/82 (20%), Gaps = 41/82 (50%)
Query: 327 RKNESNDEPNM--------CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKG 378
K PN+ C + + GD
Sbjct: 8 DKRAGRRGPNLNIVLTCPECKVYPPKIVERFSE------------------GD------- 42
Query: 379 RTCGECGMAQEEINALVVGLRI 400
C CG+ V+ ++
Sbjct: 43 VVCALCGL--------VLSDKL 56
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase,
PSI, protei structure initiative; HET: MSE; 2.05A
{Escherichia coli} SCOP: c.66.1.46
Length = 202
Score = 29.5 bits (67), Expect = 1.4
Identities = 10/72 (13%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
+ LD A G + +L R ++ + K A + +A
Sbjct: 55 DAQCLDCFAGSGA--LGLEALSRYAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNA 112
Query: 322 LKAVRRKNESND 333
+ + +K ++
Sbjct: 113 MSFLAQKGTPHN 124
>1wzn_A SAM-dependent methyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; HET:
SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43
Length = 252
Score = 29.8 bits (67), Expect = 1.5
Identities = 24/109 (22%), Positives = 42/109 (38%), Gaps = 20/109 (18%)
Query: 225 MHNRIFQLPSFYDVL--------EGEI-FLQNLPSIVTAHALDPQKGERILDMCAAPGGK 275
M+ L +YD + + EI F++ + ++ R+LD+ G
Sbjct: 1 MYELYTLLAEYYDTIYRRRIERVKAEIDFVEEI-----FKEDAKREVRRVLDLACGTG-- 53
Query: 276 TTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
L + G EVV +D + ++ A E LK I + D L+
Sbjct: 54 --IPTLELAERGYEVVGLDLHEEMLRVARRKAKERNLK-IEFLQGDVLE 99
>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus,
methyltransferase, adoMet, structural genomics; 1.80A
{Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB:
1wxw_A 2cww_A*
Length = 382
Score = 29.6 bits (67), Expect = 1.9
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
+GER LD+ + GG L EVVAVD S + ++ A GL + + +
Sbjct: 209 RGERALDVFSYAGGFALH---LALGFREVVAVDSSAEALRRAEENARLNGLGNVRVLEAN 265
Query: 321 A---LKAVRRKNESND 333
A L+ + ++ E D
Sbjct: 266 AFDLLRRLEKEGERFD 281
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: SAM;
1.60A {Rhodopseudomonas palustris}
Length = 211
Score = 29.1 bits (65), Expect = 2.4
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRS 295
G +IL++ G A + G +V A D S
Sbjct: 42 PAGAKILELGCGAGY----QAEAMLAAGFDVDATDGS 74
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 29.4 bits (65), Expect = 2.6
Identities = 8/79 (10%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
+ + ++ D +A G + + A D S + +++ +
Sbjct: 43 LEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNI 102
Query: 312 KC--ITTYKLDALKAVRRK 328
+ ++A +R++
Sbjct: 103 PEDRYEIHGMEANFFLRKE 121
>2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima
dehydrogenase; shikimate, NADPH, dehydroshikimate,
bifunctional enzyme; HET: DHK TLA NAP; 1.78A
{Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A*
Length = 523
Score = 29.3 bits (66), Expect = 3.0
Identities = 19/91 (20%), Positives = 40/91 (43%), Gaps = 7/91 (7%)
Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG-EVVAVD 293
+E + PS V + + + ++ + A GG A+A +++G +VV +
Sbjct: 338 SISAIEDGLRSSGDPSSVPSSSSPL-ASKTVVVIGA--GGAGKALAYGAKEKGAKVVIAN 394
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
R++ + +LA +G K ++ LD
Sbjct: 395 RTYERA---LELAEAIGGKALSLTDLDNYHP 422
>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4;
2.25A {Escherichia coli}
Length = 347
Score = 29.1 bits (66), Expect = 3.1
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
+ L+ + +D GG + I S L +EG ++A+DR
Sbjct: 51 NGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDR 90
>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics,
midwest CENT structural genomics, protein structure
initiative; 1.80A {Streptococcus agalactiae}
Length = 230
Score = 28.7 bits (64), Expect = 3.3
Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGL-KCITTY 317
KG R+LD+ + I L +A + + K +E GL I
Sbjct: 20 PKGARLLDVGSDHA--YLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVR 77
Query: 318 KLDALKAVRRKNE 330
+ L A +
Sbjct: 78 LANGLSAFEEADN 90
>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural
genomics, beta barrel, rossmann fold, tetramer; HET:
SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP:
c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*
Length = 192
Score = 28.5 bits (64), Expect = 3.6
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 3/61 (4%)
Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
+ +P K + +D+ GG T +A V A+DR+ + + G
Sbjct: 23 CLIMCLAEPGKNDVAVDVGCGTGGVTLELA---GRVRRVYAIDRNPEAISTTEMNLQRHG 79
Query: 311 L 311
L
Sbjct: 80 L 80
>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein
structure initiative, MCSG, midwest center for
structural genomics; 2.19A {Deinococcus radiodurans}
Length = 226
Score = 28.1 bits (62), Expect = 4.4
Identities = 8/42 (19%), Positives = 11/42 (26%), Gaps = 5/42 (11%)
Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
+ L P R+L+ G A D S
Sbjct: 43 SRLLTP--QTRVLEAGCGHGPDAARFG---PQAARWAAYDFS 79
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 28.7 bits (64), Expect = 4.8
Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPG-GKTTAIASLLRDEGEVV----AVD-RSHN 297
+ + + D R + PG GKTTA + ++ G + A D RS
Sbjct: 58 WENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKT 117
Query: 298 KVMDIQKLAAEM 309
+ K A +
Sbjct: 118 LLNAGVKNALDN 129
>1ztp_A Basophilic leukemia expressed protein BLES03; HS.433573, BC010512,
structural genomics, Pro structure initiative, PSI,
CESG; HET: MSE; 2.50A {Homo sapiens} SCOP: d.86.1.2 PDB:
2q4k_A
Length = 251
Score = 28.2 bits (62), Expect = 5.1
Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 2/51 (3%)
Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDA--LKAVRRKNESNDEPNMCNSKD 342
V++ G+KC+ TYK D + R N + P + S+
Sbjct: 180 TDRLGVLEADSAIRAAGIKCLLTYKPDVYTYLGIYRANRWHLCPTLYESRF 230
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET:
SAH; 3.10A {Arabidopsis thaliana}
Length = 950
Score = 28.7 bits (63), Expect = 5.1
Identities = 5/41 (12%), Positives = 12/41 (29%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ ++D G ++ ++ VD S
Sbjct: 716 HIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISP 756
>4b28_A Metallopeptidase, family M24, putative; lyase,
imethylsulfonioproionate, acrylate, dimethylsulfide;
2.15A {Roseobacter denitrificans och 114}
Length = 470
Score = 28.4 bits (63), Expect = 5.7
Identities = 16/117 (13%), Positives = 30/117 (25%), Gaps = 17/117 (14%)
Query: 49 RVNTLKTTTDDVIQKLLAIIQNSGSSEAD---VASSVKGRLQNGTISESQIPGLEYVVFV 105
+V T +D+ L + G + +AS + E + F
Sbjct: 259 KVGDGVTCENDIWAILHSENVRRGGEWIETRLLASGPRSNPWFQECGPRVCQRNEIISFD 318
Query: 106 KGSGPHTIDYGY-----------EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACS 151
YG + + + E + ++ PGVM
Sbjct: 319 TDL---VGAYGICTDISRSWWIGDQKPRADMIYAMQHGVEHIRTNMEMLKPGVMIPE 372
>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM
MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB:
1nv9_A* 1vq1_A* 1sg9_A*
Length = 284
Score = 27.9 bits (63), Expect = 5.8
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 257 LDPQKGERILDMCAAPGGKTTAIA-SLL-RDEGEVVAVDRS 295
+ + + D+ G AI S+ + V A D S
Sbjct: 119 IRKYGIKTVADIGTGSG----AIGVSVAKFSDAIVFATDVS 155
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase;
1.90A {Tomato mosaic virus}
Length = 446
Score = 28.2 bits (62), Expect = 6.1
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 269 CAAPG-GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE 308
PG GKT I S + E +++ V M ++ A
Sbjct: 167 DGVPGCGKTKEILSRVNFEEDLILVPGRQAAEMIRRRANAS 207
>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl
homocysteine, protein repair; HET: SAH; 1.50A {Homo
sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*
Length = 226
Score = 27.5 bits (62), Expect = 6.8
Identities = 18/84 (21%), Positives = 33/84 (39%), Gaps = 22/84 (26%)
Query: 249 PSIVTAHAL-----DPQKGERILDMCAAPG---GKTTAI-ASLLRDEGEVVAVDRSHNKV 299
P + A+AL +G + LD+ G G TA A ++ G+V+ +D
Sbjct: 61 PHMH-AYALELLFDQLHEGAKALDV----GSGSGILTACFARMVGCTGKVIGIDH----- 110
Query: 300 MDIQKLAAEMGLKCITTYKLDALK 323
I++L + + + L
Sbjct: 111 --IKEL-VDDSVNNVRKDDPTLLS 131
>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification
enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus
jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*
Length = 336
Score = 27.9 bits (62), Expect = 6.9
Identities = 7/37 (18%), Positives = 16/37 (43%), Gaps = 4/37 (10%)
Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
+ ++DM A G + A + ++ A+D +
Sbjct: 194 SLNDVVVDMFAGVGPFSIACKN----AKKIYAIDINP 226
>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann
methyltransferase, protein repair isomerization; HET:
SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB:
1jg2_A* 1jg3_A* 1jg4_A*
Length = 235
Score = 27.6 bits (62), Expect = 7.3
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 12/52 (23%)
Query: 249 PSIVTAH---ALDPQKGERILDMCAAPG---GKTTAIASLLRDEGEVVAVDR 294
P +V A + + G IL++ G G A+ S + +V ++R
Sbjct: 77 PHMV-AIMLEIANLKPGMNILEV----GTGSGWNAALISEIVK-TDVYTIER 122
>2v50_A Multidrug resistance protein MEXB; DDM, RND, membrane, detergent,
transport, cell membrane, transmembrane, membrane
protein; HET: LMT; 3.00A {Pseudomonas aeruginosa PA01}
Length = 1052
Score = 27.9 bits (63), Expect = 7.8
Identities = 10/50 (20%), Positives = 21/50 (42%), Gaps = 8/50 (16%)
Query: 65 LAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVV------FVKGS 108
+AI +G++ D A +++ + N + G++ V V S
Sbjct: 289 IAIKLATGANALDTAKAIRQTIAN--LEPFMPQGMKVVYPYDTTPVVSAS 336
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein,
membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY
C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB:
2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A*
1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A*
3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Length = 1057
Score = 27.9 bits (63), Expect = 7.9
Identities = 13/50 (26%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 65 LAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVV------FVKGS 108
L I +G++ D A++++ L + GL+ V FVK S
Sbjct: 289 LGIKLATGANALDTAAAIRAELAK--MEPFFPSGLKIVYPYDTTPFVKIS 336
>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein
structure initiative, midwest center for structural
genomics, MCSG; 2.06A {Listeria innocua}
Length = 202
Score = 27.2 bits (61), Expect = 8.4
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 14/52 (26%)
Query: 278 AIASLLRDEGEVVAVDRSHNKVM-------DIQKLAAEMGLKCITTYKLDAL 322
A+ L + EV+ R V I+K+ ++G K+DA+
Sbjct: 18 AVKERLEKKAEVITAGRHSGDVTVDITNIDSIKKMYEQVG-------KVDAI 62
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 27.3 bits (61), Expect = 9.8
Identities = 9/41 (21%), Positives = 15/41 (36%), Gaps = 1/41 (2%)
Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
L P ++LD+ G + A A + + D S
Sbjct: 191 TLTPHTKGKVLDVGCGAGVLSVAFA-RHSPKIRLTLCDVSA 230
>1vbf_A 231AA long hypothetical protein-L-isoaspartate O-
methyltransferase; trimeric coiled coil assembly; 2.80A
{Sulfolobus tokodaii} SCOP: c.66.1.7
Length = 231
Score = 27.2 bits (61), Expect = 9.9
Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 13/52 (25%)
Query: 249 PSIVTAH---ALDPQKGERILDMCAAPG---GKTTAIASLLRDEGEVVAVDR 294
++ LD KG+++L++ G G TA+ + + +VV+V+
Sbjct: 56 LNLG-IFMLDELDLHKGQKVLEI----GTGIGYYTALIAEI--VDKVVSVEI 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.386
Gapped
Lambda K H
0.267 0.0528 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,358,456
Number of extensions: 391976
Number of successful extensions: 1202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1179
Number of HSP's successfully gapped: 130
Length of query: 422
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 326
Effective length of database: 4,021,377
Effective search space: 1310968902
Effective search space used: 1310968902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.0 bits)